BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025688
(249 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2QUH|A Chain A, Crystal Structures Of Human Tryptophanyl-Trna Synthetase
In Complex With Trp
pdb|2QUI|A Chain A, Crystal Structures Of Human Tryptophanyl-Trna Synthetase
In Complex With Tryptophanamide And Atp
pdb|2QUI|B Chain B, Crystal Structures Of Human Tryptophanyl-Trna Synthetase
In Complex With Tryptophanamide And Atp
pdb|2QUJ|A Chain A, Crystal Structures Of Human Tryptophanyl-Trna Synthetase
In Complex With Trpamp
pdb|2QUK|A Chain A, Crystal Structures Of Human Tryptophanyl-Trna Synthetase
In Complex With Atp(Putative)
pdb|2QUH|B Chain B, Crystal Structures Of Human Tryptophanyl-Trna Synthetase
In Complex With Trp
Length = 477
Score = 296 bits (759), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 139/235 (59%), Positives = 179/235 (76%), Gaps = 6/235 (2%)
Query: 17 VSPWEV--SSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLN 74
V PW V SS+ IDYDKLI +FG ++D+ L++R++R TG+ PH FLRRG+FF+HRD+N
Sbjct: 85 VDPWTVQTSSAKGIDYDKLIVRFGSSKIDKELINRIERATGQRPHHFLRRGIFFSHRDMN 144
Query: 75 DILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWK 134
+LDAYE + FYLYTGRGPSSEA+H+GHL+PF+FTK+LQD F VPLVIQ+TDDEK +WK
Sbjct: 145 QVLDAYENKKPFYLYTGRGPSSEAMHVGHLIPFIFTKWLQDVFNVPLVIQMTDDEKYLWK 204
Query: 135 NLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVG--GAFYKNMVKVAKCVTYNKVV 192
+L+++++ A ENAKDIIACGFD+ KTFIFSD DY+G FYKN+VK+ K VT+N+V
Sbjct: 205 DLTLDQAYSYAVENAKDIIACGFDINKTFIFSDLDYMGMSSGFYKNVVKIQKHVTFNQVK 264
Query: 193 GIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCAIDQVGSPFF 247
GIFGFT D IGK+SFP +QA + ++CLIPCAIDQ P+F
Sbjct: 265 GIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQ--DPYF 317
>pdb|1ULH|A Chain A, A Short Peptide Insertion Crucial For Angiostatic Activity
Of Human Tryptophanyl-Trna Synthetase
pdb|1ULH|B Chain B, A Short Peptide Insertion Crucial For Angiostatic Activity
Of Human Tryptophanyl-Trna Synthetase
Length = 390
Score = 295 bits (756), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 139/235 (59%), Positives = 179/235 (76%), Gaps = 6/235 (2%)
Query: 17 VSPWEV--SSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLN 74
V PW V SS+ IDYDKLI +FG ++D+ L++R++R TG+ PH FLRRG+FF+HRD+N
Sbjct: 4 VDPWTVQTSSAKGIDYDKLIVRFGSSKIDKELINRIERATGQRPHHFLRRGIFFSHRDMN 63
Query: 75 DILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWK 134
+LDAYE + FYLYTGRGPSSEA+H+GHL+PF+FTK+LQD F VPLVIQ+TDDEK +WK
Sbjct: 64 QVLDAYENKKPFYLYTGRGPSSEAMHVGHLIPFIFTKWLQDVFNVPLVIQMTDDEKYLWK 123
Query: 135 NLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVG--GAFYKNMVKVAKCVTYNKVV 192
+L+++++ A ENAKDIIACGFD+ KTFIFSD DY+G FYKN+VK+ K VT+N+V
Sbjct: 124 DLTLDQAYSYAVENAKDIIACGFDINKTFIFSDLDYMGMSSGFYKNVVKIQKHVTFNQVK 183
Query: 193 GIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCAIDQVGSPFF 247
GIFGFT D IGK+SFP +QA + ++CLIPCAIDQ P+F
Sbjct: 184 GIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQ--DPYF 236
>pdb|1R6T|A Chain A, Crystal Structure Of Human Tryptophanyl-Trna Synthetase
pdb|1R6T|B Chain B, Crystal Structure Of Human Tryptophanyl-Trna Synthetase
Length = 477
Score = 289 bits (740), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 139/235 (59%), Positives = 175/235 (74%), Gaps = 6/235 (2%)
Query: 17 VSPWEV--SSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLN 74
V PW V SS+ IDYDKLI +FG ++D+ L++R++R TG+ PH FLRRG+FF+HRD N
Sbjct: 85 VDPWTVQTSSAKGIDYDKLIVRFGSSKIDKELINRIERATGQRPHHFLRRGIFFSHRDXN 144
Query: 75 DILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWK 134
+LDAYE + FYLYTGRGPSSEA H+GHL+PF+FTK+LQD F VPLVIQ TDDEK +WK
Sbjct: 145 QVLDAYENKKPFYLYTGRGPSSEAXHVGHLIPFIFTKWLQDVFNVPLVIQXTDDEKYLWK 204
Query: 135 NLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVG--GAFYKNMVKVAKCVTYNKVV 192
+L+++++ A ENAKDIIACGFD+ KTFIFSD DY G FYKN+VK+ K VT+N+V
Sbjct: 205 DLTLDQAYGDAVENAKDIIACGFDINKTFIFSDLDYXGXSSGFYKNVVKIQKHVTFNQVK 264
Query: 193 GIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCAIDQVGSPFF 247
GIFGFT D IGK+SFP +QA + ++CLIPCAIDQ P+F
Sbjct: 265 GIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQ--DPYF 317
>pdb|2AZX|A Chain A, Charged And Uncharged Trnas Adopt Distinct Conformations
When Complexed With Human Tryptophanyl-Trna Synthetase
pdb|2AZX|B Chain B, Charged And Uncharged Trnas Adopt Distinct Conformations
When Complexed With Human Tryptophanyl-Trna Synthetase
Length = 477
Score = 289 bits (739), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 139/235 (59%), Positives = 175/235 (74%), Gaps = 6/235 (2%)
Query: 17 VSPWEV--SSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLN 74
V PW V SS+ IDYDKLI +FG ++D+ L++R++R TG+ PH FLRRG+FF+HRD N
Sbjct: 85 VDPWTVQTSSAKGIDYDKLIVRFGSSKIDKELINRIERATGQRPHHFLRRGIFFSHRDXN 144
Query: 75 DILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWK 134
+LDAYE + FYLYTGRGPSSEA H+GHL+PF+FTK+LQD F VPLVIQ TDDEK +WK
Sbjct: 145 QVLDAYENKKPFYLYTGRGPSSEAXHVGHLIPFIFTKWLQDVFNVPLVIQXTDDEKYLWK 204
Query: 135 NLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVG--GAFYKNMVKVAKCVTYNKVV 192
+L+++++ A ENAKDIIACGFD+ KTFIFSD DY G FYKN+VK+ K VT+N+V
Sbjct: 205 DLTLDQAYGDAVENAKDIIACGFDINKTFIFSDLDYXGXSSGFYKNVVKIQKHVTFNQVK 264
Query: 193 GIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCAIDQVGSPFF 247
GIFGFT D IGK+SFP +QA + ++CLIPCAIDQ P+F
Sbjct: 265 GIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQ--DPYF 317
>pdb|1O5T|A Chain A, Crystal Structure Of The Aminoacylation Catalytic Fragment
Of Human Tryptophanyl-Trna Synthetase
Length = 378
Score = 288 bits (738), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 134/226 (59%), Positives = 174/226 (76%), Gaps = 4/226 (1%)
Query: 24 SSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKG 83
S+ IDYDKLI +FG ++D+ L++R++R TG+ PH FLRRG+FF+HRD+N +LDAYE
Sbjct: 1 SAKGIDYDKLIVRFGSSKIDKELINRIERATGQRPHHFLRRGIFFSHRDMNQVLDAYENK 60
Query: 84 EKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQR 143
+ FYLYTGRGPSSEA+H+GHL+PF+FTK+LQD F VPLVIQ+TDDEK +WK+L+++++
Sbjct: 61 KPFYLYTGRGPSSEAMHVGHLIPFIFTKWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYS 120
Query: 144 LARENAKDIIACGFDVTKTFIFSDFDYVG--GAFYKNMVKVAKCVTYNKVVGIFGFTGED 201
A ENAKDIIACGFD+ KTFIFSD DY+G FYKN+VK+ K VT+N+V GIFGFT D
Sbjct: 121 YAVENAKDIIACGFDINKTFIFSDLDYMGMSSGFYKNVVKIQKHVTFNQVKGIFGFTDSD 180
Query: 202 HIGKVSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCAIDQVGSPFF 247
IGK+SFP +QA + ++CLIPCAIDQ P+F
Sbjct: 181 CIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQ--DPYF 224
>pdb|2AKE|A Chain A, Structure Of Human Tryptophanyl-Trna Synthetase In Complex
With Trna(Trp)
pdb|2DR2|A Chain A, Structure Of Human Tryptophanyl-trna Synthetase In Complex
With Trna(trp)
Length = 384
Score = 288 bits (738), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 134/226 (59%), Positives = 174/226 (76%), Gaps = 4/226 (1%)
Query: 24 SSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKG 83
S+ IDYDKLI +FG ++D+ L++R++R TG+ PH FLRRG+FF+HRD+N +LDAYE
Sbjct: 1 SAKGIDYDKLIVRFGSSKIDKELINRIERATGQRPHHFLRRGIFFSHRDMNQVLDAYENK 60
Query: 84 EKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQR 143
+ FYLYTGRGPSSEA+H+GHL+PF+FTK+LQD F VPLVIQ+TDDEK +WK+L+++++
Sbjct: 61 KPFYLYTGRGPSSEAMHVGHLIPFIFTKWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYS 120
Query: 144 LARENAKDIIACGFDVTKTFIFSDFDYVG--GAFYKNMVKVAKCVTYNKVVGIFGFTGED 201
A ENAKDIIACGFD+ KTFIFSD DY+G FYKN+VK+ K VT+N+V GIFGFT D
Sbjct: 121 YAVENAKDIIACGFDINKTFIFSDLDYMGMSSGFYKNVVKIQKHVTFNQVKGIFGFTDSD 180
Query: 202 HIGKVSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCAIDQVGSPFF 247
IGK+SFP +QA + ++CLIPCAIDQ P+F
Sbjct: 181 CIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQ--DPYF 224
>pdb|2QUJ|B Chain B, Crystal Structures Of Human Tryptophanyl-Trna Synthetase
In Complex With Trpamp
Length = 384
Score = 288 bits (738), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 134/226 (59%), Positives = 174/226 (76%), Gaps = 4/226 (1%)
Query: 24 SSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKG 83
S+ IDYDKLI +FG ++D+ L++R++R TG+ PH FLRRG+FF+HRD+N +LDAYE
Sbjct: 1 SAKGIDYDKLIVRFGSSKIDKELINRIERATGQRPHHFLRRGIFFSHRDMNQVLDAYENK 60
Query: 84 EKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQR 143
+ FYLYTGRGPSSEA+H+GHL+PF+FTK+LQD F VPLVIQ+TDDEK +WK+L+++++
Sbjct: 61 KPFYLYTGRGPSSEAMHVGHLIPFIFTKWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYS 120
Query: 144 LARENAKDIIACGFDVTKTFIFSDFDYVG--GAFYKNMVKVAKCVTYNKVVGIFGFTGED 201
A ENAKDIIACGFD+ KTFIFSD DY+G FYKN+VK+ K VT+N+V GIFGFT D
Sbjct: 121 YAVENAKDIIACGFDINKTFIFSDLDYMGMSSGFYKNVVKIQKHVTFNQVKGIFGFTDSD 180
Query: 202 HIGKVSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCAIDQVGSPFF 247
IGK+SFP +QA + ++CLIPCAIDQ P+F
Sbjct: 181 CIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQ--DPYF 224
>pdb|1R6U|A Chain A, Crystal Structure Of An Active Fragment Of Human
Tryptophanyl-Trna Synthetase With Cytokine Activity
pdb|1R6U|B Chain B, Crystal Structure Of An Active Fragment Of Human
Tryptophanyl-Trna Synthetase With Cytokine Activity
Length = 437
Score = 288 bits (737), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 139/235 (59%), Positives = 175/235 (74%), Gaps = 6/235 (2%)
Query: 17 VSPWEV--SSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLN 74
V PW V SS+ IDYDKLI +FG ++D+ L++R++R TG+ PH FLRRG+FF+HRD N
Sbjct: 38 VDPWTVQTSSAKGIDYDKLIVRFGSSKIDKELINRIERATGQRPHHFLRRGIFFSHRDXN 97
Query: 75 DILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWK 134
+LDAYE + FYLYTGRGPSSEA H+GHL+PF+FTK+LQD F VPLVIQ TDDEK +WK
Sbjct: 98 QVLDAYENKKPFYLYTGRGPSSEAXHVGHLIPFIFTKWLQDVFNVPLVIQXTDDEKYLWK 157
Query: 135 NLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVG--GAFYKNMVKVAKCVTYNKVV 192
+L+++++ A ENAKDIIACGFD+ KTFIFSD DY G FYKN+VK+ K VT+N+V
Sbjct: 158 DLTLDQAYGDAVENAKDIIACGFDINKTFIFSDLDYXGXSSGFYKNVVKIQKHVTFNQVK 217
Query: 193 GIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCAIDQVGSPFF 247
GIFGFT D IGK+SFP +QA + ++CLIPCAIDQ P+F
Sbjct: 218 GIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQ--DPYF 270
>pdb|3HV0|A Chain A, Tryptophanyl-Trna Synthetase From Cryptosporidium Parvum
pdb|3HV0|B Chain B, Tryptophanyl-Trna Synthetase From Cryptosporidium Parvum
Length = 393
Score = 253 bits (646), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 122/232 (52%), Positives = 164/232 (70%), Gaps = 6/232 (2%)
Query: 19 PWEVSSSGK--IDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDI 76
PWEV + IDY+KLIDKFGC+ + + +++R++RLTG+ H F RR +F +HRD I
Sbjct: 6 PWEVKADNAYGIDYNKLIDKFGCKLITKDMIERMERLTGQKAHHFFRRNIFLSHRDFEKI 65
Query: 77 LDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWK-N 135
LD YEKGE FYLYTGRGPSSE+LH+GHLVPF+FTKYLQD FKVPLVIQLTDDEK ++K N
Sbjct: 66 LDVYEKGELFYLYTGRGPSSESLHVGHLVPFLFTKYLQDTFKVPLVIQLTDDEKFIFKSN 125
Query: 136 LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIF 195
L++EE+ A EN KDIIACGFD TFIF++ +Y+ Y +++++ K ++ +++ IF
Sbjct: 126 LTLEETHNYAYENMKDIIACGFDPELTFIFTNLEYI-AELYPDILRIEKKISCSQIKSIF 184
Query: 196 GFTGEDHIGKVSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCAIDQVGSPFF 247
GF ++GK +FP VQA G+ + CL+P AIDQ P+F
Sbjct: 185 GFKDSCNVGKFAFPAVQAAPAFSSSFPHIFGGRTDIHCLVPHAIDQ--DPYF 234
>pdb|3I05|A Chain A, Tryptophanyl-Trna Synthetase From Trypanosoma Brucei
pdb|3I05|B Chain B, Tryptophanyl-Trna Synthetase From Trypanosoma Brucei
Length = 395
Score = 249 bits (637), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 120/233 (51%), Positives = 164/233 (70%), Gaps = 6/233 (2%)
Query: 16 VVSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLND 75
VV+PW V G ++YDKLI FG +D++L++R++R+ G+ PH FLRRG+FF+HRDLN
Sbjct: 11 VVTPWSVE--GDVNYDKLIKDFGSHAIDEALLERIERVLGKKPHHFLRRGIFFSHRDLNL 68
Query: 76 ILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKN 135
+LD YE G+ FYLYTGRGPSSE++H+GHL+PFMFTK+LQD+F+VPLVIQ+TDDEK ++N
Sbjct: 69 LLDVYESGQPFYLYTGRGPSSESMHMGHLIPFMFTKWLQDSFRVPLVIQMTDDEKFYFRN 128
Query: 136 LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIF 195
+ +E+ + + EN KDIIA GFD TFIF DFDY+ G Y+ + K+ + T ++V G F
Sbjct: 129 IPMEQVEAMTTENIKDIIAMGFDPELTFIFRDFDYM-GCMYRTVAKIERAFTASQVRGCF 187
Query: 196 GFTGEDHIGKVSFPPVQAVXX-XXXXXXXXXXGKDHLRCLIPCAIDQVGSPFF 247
GF ED+ G+ FP +QA ++ CLIP AIDQ P+F
Sbjct: 188 GFAMEDNCGRWMFPAIQAAPSFSAAFPHIFPPSMGNVFCLIPQAIDQ--DPYF 238
>pdb|3KT0|A Chain A, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet
pdb|3KT3|A Chain A, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet Complex With Trpamp
pdb|3KT3|B Chain B, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet Complex With Trpamp
pdb|3KT3|C Chain C, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet Complex With Trpamp
pdb|3KT3|D Chain D, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet Complex With Trpamp
pdb|3KT6|A Chain A, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet Complex With Trp
pdb|3KT6|B Chain B, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet Complex With Trp
pdb|3KT6|C Chain C, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet Complex With Trp
pdb|3KT6|D Chain D, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet Complex With Trp
pdb|3KT8|A Chain A, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet Complex With L-Tryptophanamide
pdb|3KT8|B Chain B, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet Complex With L-Tryptophanamide
pdb|3KT8|C Chain C, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet Complex With L-Tryptophanamide
pdb|3KT8|D Chain D, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet Complex With L-Tryptophanamide
Length = 438
Score = 243 bits (619), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 119/242 (49%), Positives = 164/242 (67%), Gaps = 10/242 (4%)
Query: 16 VVSPWEVSS-------SGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFF 68
VV+PW+V + IDYDKLI +FG + +++ + R +++TGR PH FLR+G+FF
Sbjct: 26 VVTPWDVEGGVDEQGRAQNIDYDKLIKQFGTKPVNEETLKRFKQVTGREPHHFLRKGLFF 85
Query: 69 AHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDD 128
+ RD ILD YE+G+ F+LYTGRGPSS+++HLGH++PF+FTK+LQ+ F VPLVI+LTDD
Sbjct: 86 SERDFTKILDLYEQGKPFFLYTGRGPSSDSMHLGHMIPFVFTKWLQEVFDVPLVIELTDD 145
Query: 129 EKCMWKN-LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVT 187
EK ++K+ L++ + + ARENAKDIIA GFD TFIFSD Y+GGAFY+ +V+V++ +T
Sbjct: 146 EKFLFKHKLTINDVKNFARENAKDIIAVGFDPKNTFIFSDLQYMGGAFYETVVRVSRQIT 205
Query: 188 YNKVVGIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCAIDQVGSPFF 247
+ +FGF D IGK F +Q D CLIPCAIDQ P+F
Sbjct: 206 GSTAKAVFGFNDSDCIGKFHFASIQIATAFPSSFPNVLGLPDKTPCLIPCAIDQ--DPYF 263
Query: 248 LV 249
V
Sbjct: 264 RV 265
>pdb|2IP1|A Chain A, Crystal Structure Analysis Of S. Cerevisiae Tryptophanyl
Trna Synthetase
Length = 432
Score = 243 bits (619), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 119/242 (49%), Positives = 164/242 (67%), Gaps = 10/242 (4%)
Query: 16 VVSPWEVSS-------SGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFF 68
VV+PW+V + IDYDKLI +FG + +++ + R +++TGR PH FLR+G+FF
Sbjct: 26 VVTPWDVEGGVDEQGRAQNIDYDKLIKQFGTKPVNEETLKRFKQVTGREPHHFLRKGLFF 85
Query: 69 AHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDD 128
+ RD ILD YE+G+ F+LYTGRGPSS+++HLGH++PF+FTK+LQ+ F VPLVI+LTDD
Sbjct: 86 SERDFTKILDLYEQGKPFFLYTGRGPSSDSMHLGHMIPFVFTKWLQEVFDVPLVIELTDD 145
Query: 129 EKCMWKN-LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVT 187
EK ++K+ L++ + + ARENAKDIIA GFD TFIFSD Y+GGAFY+ +V+V++ +T
Sbjct: 146 EKFLFKHKLTINDVKNFARENAKDIIAVGFDPKNTFIFSDLQYMGGAFYETVVRVSRQIT 205
Query: 188 YNKVVGIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCAIDQVGSPFF 247
+ +FGF D IGK F +Q D CLIPCAIDQ P+F
Sbjct: 206 GSTAKAVFGFNDSDCIGKFHFASIQIATAFPSSFPNVLGLPDKTPCLIPCAIDQ--DPYF 263
Query: 248 LV 249
V
Sbjct: 264 RV 265
>pdb|3TZE|A Chain A, Crystal Structure Of A Tryptophanyl-Trna Synthetase From
Encephalitozoon Cuniculi Bound To Tryptophan
pdb|3TZE|B Chain B, Crystal Structure Of A Tryptophanyl-Trna Synthetase From
Encephalitozoon Cuniculi Bound To Tryptophan
Length = 406
Score = 222 bits (566), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 105/237 (44%), Positives = 155/237 (65%), Gaps = 12/237 (5%)
Query: 17 VSPW--EVSSSGK----IDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAH 70
++PW EV S+ + IDYDK+I++FGC++ +Q+L DR+++L+G+P H F RRG+ FAH
Sbjct: 27 ITPWDVEVVSTDEVPVAIDYDKIINQFGCEKFNQALADRLEKLSGKPAHYFFRRGIVFAH 86
Query: 71 RDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEK 130
RD N +LD FYLYTGRGPSS+ +H+GH +PF+ KY+QDAFK+ LVIQ+TDDEK
Sbjct: 87 RDFNLLLDEIANNRPFYLYTGRGPSSKTMHIGHTIPFLLCKYMQDAFKIRLVIQITDDEK 146
Query: 131 CMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNK 190
+WK++ +E++ REN KDI+ GFD T+IFS+ + F +N++K++K + N+
Sbjct: 147 FLWKSMRLEDAMAYGRENIKDIVTLGFDPKLTYIFSNVE-ASHHFEENILKISKTINLNE 205
Query: 191 VVGIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCAIDQVGSPFF 247
+ +FGF +IG+V FP + G CL+P A+DQ PFF
Sbjct: 206 AIKVFGFDMSSNIGQVGFPAKEIAPCFSSSFRFIGKGA---MCLVPAAVDQ--DPFF 257
>pdb|3JXE|A Chain A, Crystal Structure Of Pyrococcus Horikoshii
Tryptophanyl-Trna Synthetase In Complex With Trpamp
pdb|3JXE|B Chain B, Crystal Structure Of Pyrococcus Horikoshii
Tryptophanyl-Trna Synthetase In Complex With Trpamp
Length = 392
Score = 183 bits (465), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 98/226 (43%), Positives = 138/226 (61%), Gaps = 16/226 (7%)
Query: 17 VSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDI 76
V+PWEV G +DYDKLI FG L + L+++ LT +F RR FF+HRD + I
Sbjct: 7 VTPWEVE--GVVDYDKLIKHFGTSPLTEDLLEKTAELTKSELPIFFRRKFFFSHRDYDLI 64
Query: 77 LDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWK-N 135
L YE+G F+LYTGRGPS +H+GH++PF TK+LQ+ F V L IQ+TDDEK ++K N
Sbjct: 65 LKDYEEGRGFFLYTGRGPSG-PMHIGHIIPFFATKWLQEKFGVNLYIQITDDEKFLFKEN 123
Query: 136 LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIF 195
L+ ++++R A +N DIIA GFD KTFIF + ++ Y+ + +AK + ++ +F
Sbjct: 124 LTFDDTKRWAYDNILDIIAVGFDPDKTFIFQNSEFT--KIYEMAIPIAKKINFSMAKAVF 181
Query: 196 GFTGEDHIGKVSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCAIDQ 241
GFT + IG + FP +Q + RCLIP AIDQ
Sbjct: 182 GFTEQSKIGMIFFPAIQIAPTFF----------ERKRCLIPAAIDQ 217
>pdb|3FOC|A Chain A, Tryptophanyl-Trna Synthetase From Giardia Lamblia
pdb|3FOC|B Chain B, Tryptophanyl-Trna Synthetase From Giardia Lamblia
Length = 451
Score = 174 bits (442), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 89/184 (48%), Positives = 120/184 (65%), Gaps = 2/184 (1%)
Query: 33 LIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGR 92
+I +FG + L+ R + +TG H LRRG+F+AHRD + L YEKG Y+YTGR
Sbjct: 39 IITRFGAAPITDDLLKRFETVTGTKAHPMLRRGLFYAHRDFEEFLSYYEKGHPIYIYTGR 98
Query: 93 GPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMW-KNLSVEESQRLARENAKD 151
GPSS ALHLGHL+PF+FTKYLQDAFK +VIQ+TDDEK + ++LS E REN KD
Sbjct: 99 GPSSGALHLGHLLPFIFTKYLQDAFKCYVVIQITDDEKFLRNRSLSYAEVDSYTRENIKD 158
Query: 152 IIACGFDVTKTFIFSDFDYVG-GAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPP 210
IIACGFD KTFIF + Y+ Y+ V + + +++ FGF+ + ++G +FPP
Sbjct: 159 IIACGFDPDKTFIFINSQYLSLKNRYRFSCLVDRMLPISQLRASFGFSNDANVGYAAFPP 218
Query: 211 VQAV 214
Q +
Sbjct: 219 KQML 222
>pdb|3HZR|A Chain A, Tryptophanyl-Trna Synthetase Homolog From Entamoeba
Histolytica
pdb|3HZR|B Chain B, Tryptophanyl-Trna Synthetase Homolog From Entamoeba
Histolytica
pdb|3HZR|C Chain C, Tryptophanyl-Trna Synthetase Homolog From Entamoeba
Histolytica
pdb|3HZR|D Chain D, Tryptophanyl-Trna Synthetase Homolog From Entamoeba
Histolytica
pdb|3HZR|E Chain E, Tryptophanyl-Trna Synthetase Homolog From Entamoeba
Histolytica
pdb|3HZR|F Chain F, Tryptophanyl-Trna Synthetase Homolog From Entamoeba
Histolytica
Length = 386
Score = 127 bits (320), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 61/183 (33%), Positives = 106/183 (57%), Gaps = 2/183 (1%)
Query: 29 DYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKGEKFYL 88
DY++LI+ G + + R+++L+G+ PH +L RGVF A + L+ LD E + ++
Sbjct: 26 DYNQLINSVGINAITPQQIQRIEKLSGKAPHHYLSRGVFLAEKSLDKFLDDVEAKKPTFI 85
Query: 89 YTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLAREN 148
+ + P E + L + F +YLQDAF + ++IQ+ DD K + + ++ E+ +++ +
Sbjct: 86 FIQKYPQKE-VALEEYITLEFARYLQDAFNIQVIIQILDDIKVLNREATINEASKMSNDL 144
Query: 149 AKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSF 208
K I+A GF+ KTFI++D+ Y G Y+ + V K YN V F F D+IGK++
Sbjct: 145 MKYILAFGFNEDKTFIYTDYQYFGK-MYRTISLVEKATAYNVVQPFFNFEYSDNIGKLAS 203
Query: 209 PPV 211
P +
Sbjct: 204 PSI 206
>pdb|3A04|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Hyperthermophilic Archaeon, Aeropyrum Pernix K1
pdb|3A05|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Hyperthermophilic Archaeon, Aeropyrum Pernix K1 Complex
With Tryptophan
Length = 372
Score = 71.2 bits (173), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 86/171 (50%), Gaps = 10/171 (5%)
Query: 29 DYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKGEKFYL 88
DYD+L+ FG + + L + R G P +RRG+ F HRD + IL+A +GE+ +
Sbjct: 16 DYDRLLRTFGIRPFSEVLP--LLRKAGMEPSFLMRRGIIFGHRDFDKILEAKARGERVAV 73
Query: 89 YTGRGPSSEALHLGHLVPFMFTKYLQ-DAFKVPLVIQLTDDEKCMWKNLSVEESQRLA-R 146
TG PS + H GH + YLQ + FKV + + D E + + EE+ R+A
Sbjct: 74 LTGFMPSGK-FHFGHKLTVDQLIYLQKNGFKV--FVAIADAEAFAVRRIGREEAVRIAVE 130
Query: 147 ENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKV-AKCVTYNKVVGIFG 196
E ++IA G D T + F G Y ++++ + VT ++ I+G
Sbjct: 131 EYIANMIALGLDPKDTEFY--FQTNRGTPYFRLIQLFSGKVTAAEMEAIYG 179
>pdb|1JII|A Chain A, Crystal Structure Of S. Aureus Tyrrs In Complex With
Sb-219383
pdb|1JIJ|A Chain A, Crystal Structure Of S. Aureus Tyrrs In Complex With
Sb-239629
pdb|1JIK|A Chain A, Crystal Structure Of S. Aureus Tyrrs In Complex With
Sb-243545
pdb|1JIL|A Chain A, Crystal Structure Of S. Aureus Tyrrs In Complex With
Sb284485
Length = 420
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 64 RGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVI 123
RG+ + D I D K E+ LY G P++++LH+GHL+PF+ + Q+ P+V+
Sbjct: 12 RGLIYQQTDEQGIEDLLNK-EQVTLYCGADPTADSLHIGHLLPFLTLRRFQEHGHRPIVL 70
>pdb|2JAN|A Chain A, Tyrosyl-Trna Synthetase From Mycobacterium Tuberculosis In
Unliganded State
pdb|2JAN|B Chain B, Tyrosyl-Trna Synthetase From Mycobacterium Tuberculosis In
Unliganded State
pdb|2JAN|C Chain C, Tyrosyl-Trna Synthetase From Mycobacterium Tuberculosis In
Unliganded State
pdb|2JAN|D Chain D, Tyrosyl-Trna Synthetase From Mycobacterium Tuberculosis In
Unliganded State
Length = 432
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 64 RGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVI 123
RG+ DL+ + ++G +Y G P++ +LH GHLVP + + Q A P+V+
Sbjct: 12 RGLIAQSTDLDTLAAEAQRG-PMTVYAGFDPTAPSLHAGHLVPLLTLRRFQRAGHRPIVL 70
>pdb|1X8X|A Chain A, Tyrosyl T-Rna Synthetase From E.Coli Complexed With
Tyrosine
Length = 322
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 23/36 (63%)
Query: 88 LYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVI 123
LY G P++++LHLGHLVP + K Q A P+ +
Sbjct: 36 LYCGFDPTADSLHLGHLVPLLCLKRFQQAGHKPVAL 71
>pdb|1VBM|A Chain A, Crystal Structure Of The Escherichia Coli Tyrosyl-Trna
Synthetase Complexed With Tyr-Ams
pdb|1VBM|B Chain B, Crystal Structure Of The Escherichia Coli Tyrosyl-Trna
Synthetase Complexed With Tyr-Ams
Length = 318
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 23/36 (63%)
Query: 88 LYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVI 123
LY G P++++LHLGHLVP + K Q A P+ +
Sbjct: 32 LYCGFDPTADSLHLGHLVPLLCLKRFQQAGHKPVAL 67
>pdb|1TYC|A Chain A, Structural Analysis Of A Series Of Mutants Of Tyrosyl-Trna
Synthetase: Enhancement Of Catalysis By Hydrophobic
Interactions
Length = 319
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%)
Query: 84 EKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVI 123
E+ LY G P++++LH+GHL P + + Q A P+ +
Sbjct: 29 ERVTLYCGFDPTADSLHIGHLAPILTMRRFQQAGHRPIAL 68
>pdb|1WQ3|A Chain A, Escherichia Coli Tyrosyl-Trna Synthetase Mutant Comlexed
With 3-Iodo- L-Tyrosine
pdb|2YXN|A Chain A, Structual Basis Of Azido-Tyrosine Recognition By
Engineered Bacterial Tyrosyl-Trna Synthetase
Length = 322
Score = 34.7 bits (78), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%)
Query: 88 LYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVI 123
L G P++++LHLGHLVP + K Q A P+ +
Sbjct: 36 LVCGFDPTADSLHLGHLVPLLCLKRFQQAGHKPVAL 71
>pdb|1WQ4|A Chain A, Escherichia Coli Tyrosyl-Trna Synthetase Mutant Complexed
With L- Tyrosine
Length = 321
Score = 34.7 bits (78), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%)
Query: 88 LYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVI 123
L G P++++LHLGHLVP + K Q A P+ +
Sbjct: 35 LVCGFDPTADSLHLGHLVPLLCLKRFQQAGHKPVAL 70
>pdb|1VBN|A Chain A, Escherichia Coli Tyrosyl-Trna Synthetase Mutant Complexed
With Tyr-Ams
pdb|1VBN|B Chain B, Escherichia Coli Tyrosyl-Trna Synthetase Mutant Complexed
With Tyr-Ams
Length = 318
Score = 34.7 bits (78), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%)
Query: 88 LYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVI 123
L G P++++LHLGHLVP + K Q A P+ +
Sbjct: 32 LVCGFDPTADSLHLGHLVPLLCLKRFQQAGHKPVAL 67
>pdb|1TYA|E Chain E, Structural Analysis Of A Series Of Mutants Of Tyrosyl-Trna
Synthetase: Enhancement Of Catalysis By Hydrophobic
Interactions
Length = 319
Score = 33.9 bits (76), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 23/40 (57%)
Query: 84 EKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVI 123
E+ LY G P++++LH+GHL + + Q A P+ +
Sbjct: 29 ERVTLYCGFDPTADSLHIGHLAAILTMRRFQQAGHRPIAL 68
>pdb|1TYD|E Chain E, Structure Of Tyrosyl-Trna Synthetase Refined At 2.3
Angstroms Resolution. Interaction Of The Enzyme With The
Tyrosyl Adenylate Intermediate
Length = 319
Score = 33.9 bits (76), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 23/40 (57%)
Query: 84 EKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVI 123
E+ LY G P++++LH+GHL + + Q A P+ +
Sbjct: 29 ERVTLYCGFDPTADSLHIGHLASILTMRRFQQAGHRPIAL 68
>pdb|2TS1|A Chain A, Structure Of Tyrosyl-TRNA SYNTHETASE REFINED AT 2.3
ANGSTROMS Resolution. Interaction Of The Enzyme With The
Tyrosyl Adenylate Intermediate
pdb|3TS1|A Chain A, Structure Of Tyrosyl-t/rna Synthetase Refined At 2.3
Angstroms Resolution. Interaction Of The Enzyme With The
Tyrosyl Adenylate Intermediate
Length = 419
Score = 33.5 bits (75), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 23/40 (57%)
Query: 84 EKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVI 123
E+ LY G P++++LH+GHL + + Q A P+ +
Sbjct: 29 ERVTLYCGFDPTADSLHIGHLATILTMRRFQQAGHRPIAL 68
>pdb|4TS1|A Chain A, Crystal Structure Of A Deletion Mutant Of A Tyrosyl-TRNA
Synthetase Complexed With Tyrosine
pdb|4TS1|B Chain B, Crystal Structure Of A Deletion Mutant Of A Tyrosyl-TRNA
Synthetase Complexed With Tyrosine
Length = 319
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 23/40 (57%)
Query: 84 EKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVI 123
E+ LY G P++++LH+GHL + + Q A P+ +
Sbjct: 29 ERVTLYCGFDPTADSLHIGHLATILTMRRFQQAGHRPIAL 68
>pdb|1TYB|E Chain E, Structural Analysis Of A Series Of Mutants Of Tyrosyl-Trna
Synthetase: Enhancement Of Catalysis By Hydrophobic
Interactions
Length = 319
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 23/40 (57%)
Query: 84 EKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVI 123
E+ LY G P++++LH+GHL + + Q A P+ +
Sbjct: 29 ERVTLYCGFDPTADSLHIGHLAGILTMRRFQQAGHRPIAL 68
>pdb|1H3F|A Chain A, Tyrosyl-Trna Synthetase From Thermus Thermophilus
Complexed With Tyrosinol
pdb|1H3F|B Chain B, Tyrosyl-Trna Synthetase From Thermus Thermophilus
Complexed With Tyrosinol
pdb|1H3E|A Chain A, Tyrosyl-Trna Synthetase From Thermus Thermophilus
Complexed With Wild-Type Trnatyr(Gua) And With Atp And
Tyrosinol
Length = 432
Score = 32.3 bits (72), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 60/132 (45%), Gaps = 17/132 (12%)
Query: 74 NDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQD-AFKVPLVI----QLTDD 128
++L ++G + G P+ LHLGH V + Q+ KV L+I + D
Sbjct: 26 EELLAKLKEGRPLTVKLGADPTRPDLHLGHAVVLRKMRQFQELGHKVVLIIGDFTGMIGD 85
Query: 129 EKCMWKN---LSVEESQRLARENAKDIIACGFDVTKT--FIFS---DFDYVGGAFYKNMV 180
K L++EE+ RENAK +A + + +F + +++ G +K +V
Sbjct: 86 PSGRSKTRPPLTLEET----RENAKTYVAQAGKILRQEPHLFELRYNSEWLEGLTFKEVV 141
Query: 181 KVAKCVTYNKVV 192
++ +T +++
Sbjct: 142 RLTSLMTVAQML 153
>pdb|1F1S|A Chain A, Crystal Structure Of Streptococcus Agalactiae Hyaluronate
Lyase At 2.1 Angstrom Resolution.
pdb|1I8Q|A Chain A, Crystal Structure Of Streptococcus Agalactiae Hyaluronate
Lyase Complexed With Enzyme Product, Unsaturated
Disaccharide Hyaluronan
pdb|1LXM|A Chain A, Crystal Structure Of Streptococcus Agalactiae Hyaluronate
Lyase Complexed With Hexasaccharide Unit Of Hyaluronan
Length = 814
Score = 31.2 bits (69), Expect = 0.53, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
Query: 141 SQRLARENAKDIIACGFDVTKTFIFSDFDYVGG-----AFYKNMVKVAKCVT 187
+Q+L NAK+I A D +TF++ D D + A Y+ + +AK +T
Sbjct: 110 NQKLDETNAKNIEAIKLDSNRTFLWKDLDNLNNSAQLTATYRRLEDLAKQIT 161
>pdb|1Y42|X Chain X, Crystal Structure Of A C-Terminally Truncated Cyt-18
Protein
pdb|2RKJ|A Chain A, Cocrystal Structure Of A Tyrosyl-Trna Synthetase Splicing
Factor With A Group I Intron Rna
pdb|2RKJ|B Chain B, Cocrystal Structure Of A Tyrosyl-Trna Synthetase Splicing
Factor With A Group I Intron Rna
pdb|2RKJ|E Chain E, Cocrystal Structure Of A Tyrosyl-Trna Synthetase Splicing
Factor With A Group I Intron Rna
pdb|2RKJ|F Chain F, Cocrystal Structure Of A Tyrosyl-Trna Synthetase Splicing
Factor With A Group I Intron Rna
pdb|2RKJ|I Chain I, Cocrystal Structure Of A Tyrosyl-Trna Synthetase Splicing
Factor With A Group I Intron Rna
pdb|2RKJ|J Chain J, Cocrystal Structure Of A Tyrosyl-Trna Synthetase Splicing
Factor With A Group I Intron Rna
pdb|2RKJ|M Chain M, Cocrystal Structure Of A Tyrosyl-Trna Synthetase Splicing
Factor With A Group I Intron Rna
pdb|2RKJ|N Chain N, Cocrystal Structure Of A Tyrosyl-Trna Synthetase Splicing
Factor With A Group I Intron Rna
Length = 392
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
Query: 89 YTGRGPSSEALHLGHLVPFM--FTKYLQ 114
Y G P++ +LH+GHL+P M F YL+
Sbjct: 68 YVGIDPTAPSLHVGHLLPLMPLFWMYLE 95
>pdb|2Y50|A Chain A, Crystal Structure Of Collagenase G From Clostridium
Histolyticum At 2.80 Angstrom Resolution
pdb|2Y6I|A Chain A, Crystal Structure Of Collagenase G From Clostridium
Histolyticum In Complex With
Isoamylphosphonyl-Gly-Pro-Ala At 3.25 Angstrom
Resolution
Length = 785
Score = 28.9 bits (63), Expect = 2.8, Method: Composition-based stats.
Identities = 9/32 (28%), Positives = 20/32 (62%)
Query: 167 DFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFT 198
DF+Y+ G Y + + K + +N++ G+F ++
Sbjct: 25 DFEYLNGLSYTELTNLIKNIKWNQINGLFNYS 56
>pdb|1S1H|B Chain B, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From
Yeast Obtained By Docking Atomic Models For Rna And
Protein Components Into A 11.7 A Cryo-Em Map. This File,
1s1h, Contains 40s Subunit. The 60s Ribosomal Subunit Is
In File 1s1i
Length = 185
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
Query: 85 KFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTD 127
KF +TG P + G P FT Y+ +FK P ++ +TD
Sbjct: 75 KFAAHTGATPIA-----GRFTPGSFTNYITRSFKEPRLVIVTD 112
>pdb|3IZB|A Chain A, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|A Chain A, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|A Chain A, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|A Chain A, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|A Chain A, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 252
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
Query: 85 KFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTD 127
KF +TG P + G P FT Y+ +FK P ++ +TD
Sbjct: 88 KFAAHTGATPIA-----GRFTPGSFTNYITRSFKEPRLVIVTD 125
>pdb|2Y3U|A Chain A, Crystal Structure Of Apo Collagenase G From Clostridium
Histolyticum At 2.55 Angstrom Resolution
Length = 785
Score = 28.9 bits (63), Expect = 2.9, Method: Composition-based stats.
Identities = 9/32 (28%), Positives = 20/32 (62%)
Query: 167 DFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFT 198
DF+Y+ G Y + + K + +N++ G+F ++
Sbjct: 25 DFEYLNGLSYTELTNLIKNIKWNQINGLFNYS 56
>pdb|3JYV|B Chain B, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 193
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
Query: 85 KFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTD 127
KF +TG P + G P FT Y+ +FK P ++ +TD
Sbjct: 80 KFAAHTGATPIA-----GRFTPGSFTNYITRSFKEPRLVIVTD 117
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.143 0.444
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,966,759
Number of Sequences: 62578
Number of extensions: 276641
Number of successful extensions: 831
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 770
Number of HSP's gapped (non-prelim): 39
length of query: 249
length of database: 14,973,337
effective HSP length: 96
effective length of query: 153
effective length of database: 8,965,849
effective search space: 1371774897
effective search space used: 1371774897
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.9 bits)