BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025688
(249 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P23381|SYWC_HUMAN Tryptophan--tRNA ligase, cytoplasmic OS=Homo sapiens GN=WARS PE=1
SV=2
Length = 471
Score = 321 bits (823), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 148/241 (61%), Positives = 190/241 (78%), Gaps = 6/241 (2%)
Query: 11 EEREQVVSPWEV--SSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFF 68
E E V PW V SS+ IDYDKLI +FG ++D+ L++R++R TG+ PH FLRRG+FF
Sbjct: 79 EAEEDFVDPWTVQTSSAKGIDYDKLIVRFGSSKIDKELINRIERATGQRPHHFLRRGIFF 138
Query: 69 AHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDD 128
+HRD+N +LDAYE + FYLYTGRGPSSEA+H+GHL+PF+FTK+LQD F VPLVIQ+TDD
Sbjct: 139 SHRDMNQVLDAYENKKPFYLYTGRGPSSEAMHVGHLIPFIFTKWLQDVFNVPLVIQMTDD 198
Query: 129 EKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVG--GAFYKNMVKVAKCV 186
EK +WK+L+++++ A ENAKDIIACGFD+ KTFIFSD DY+G FYKN+VK+ K V
Sbjct: 199 EKYLWKDLTLDQAYSYAVENAKDIIACGFDINKTFIFSDLDYMGMSSGFYKNVVKIQKHV 258
Query: 187 TYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQVGSPF 246
T+N+V GIFGFT D IGK+SFP +QA PSF +SFP +F + ++CLIPCAIDQ P+
Sbjct: 259 TFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQ--DPY 316
Query: 247 F 247
F
Sbjct: 317 F 317
>sp|Q5R4J1|SYWC_PONAB Tryptophan--tRNA ligase, cytoplasmic OS=Pongo abelii GN=WARS PE=2
SV=2
Length = 472
Score = 321 bits (822), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 148/241 (61%), Positives = 190/241 (78%), Gaps = 6/241 (2%)
Query: 11 EEREQVVSPWEV--SSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFF 68
E E V PW V SS+ IDYDKLI +FG ++D+ L++R++R TG+ PH FLRRG+FF
Sbjct: 80 EAEEDFVDPWTVQTSSAKGIDYDKLIVRFGSSKIDKELINRIERATGQRPHRFLRRGIFF 139
Query: 69 AHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDD 128
+HRD+N +LDAYE + FYLYTGRGPSSEA+H+GHL+PF+FTK+LQD F VPLVIQ+TDD
Sbjct: 140 SHRDMNQVLDAYENKKPFYLYTGRGPSSEAMHVGHLIPFIFTKWLQDVFNVPLVIQMTDD 199
Query: 129 EKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVG--GAFYKNMVKVAKCV 186
EK +WK+L+++++ A ENAKDIIACGFD+ KTFIFSD DY+G FYKN+VK+ K V
Sbjct: 200 EKYLWKDLTLDQAYSYAVENAKDIIACGFDINKTFIFSDLDYMGMSSGFYKNVVKIQKHV 259
Query: 187 TYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQVGSPF 246
T+N+V GIFGFT D IGK+SFP +QA PSF +SFP +F + ++CLIPCAIDQ P+
Sbjct: 260 TFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQ--DPY 317
Query: 247 F 247
F
Sbjct: 318 F 318
>sp|P23612|SYWC_RABIT Tryptophan--tRNA ligase, cytoplasmic OS=Oryctolagus cuniculus
GN=WARS PE=2 SV=3
Length = 475
Score = 318 bits (816), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 149/250 (59%), Positives = 196/250 (78%), Gaps = 6/250 (2%)
Query: 2 DKNEEKQREEEREQVVSPWEV--SSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPH 59
D + + + +++E V PW V SS+ IDYDKLI +FG ++D+ LV+R++R TG+ PH
Sbjct: 74 DSHGDPEAVDDKEDFVDPWTVRTSSAKGIDYDKLIVQFGSSKIDKELVNRIERATGQRPH 133
Query: 60 VFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKV 119
FLRRG+FF+HRD+N +LDAYE + FYLYTGRGPSSEA+H+GHL+PF+FTK+LQD F V
Sbjct: 134 RFLRRGIFFSHRDMNQVLDAYENKKPFYLYTGRGPSSEAMHVGHLIPFIFTKWLQDVFDV 193
Query: 120 PLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGA--FYK 177
PLV+Q++DDEK +WK+L++E+ ENAKDIIACGFDV KTFIFSD DY+G + FYK
Sbjct: 194 PLVVQMSDDEKYLWKDLTLEQVYGYTLENAKDIIACGFDVNKTFIFSDLDYMGMSPGFYK 253
Query: 178 NMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPC 237
N+VK+ K VT+N+V GIFGFT D IGK+SFP +QA PSF +SFP +F G+ ++CLIPC
Sbjct: 254 NVVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFHGQADIQCLIPC 313
Query: 238 AIDQVGSPFF 247
AIDQ P+F
Sbjct: 314 AIDQ--DPYF 321
>sp|Q6P7B0|SYWC_RAT Tryptophan--tRNA ligase, cytoplasmic OS=Rattus norvegicus GN=Wars
PE=1 SV=2
Length = 481
Score = 318 bits (814), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 151/248 (60%), Positives = 192/248 (77%), Gaps = 6/248 (2%)
Query: 4 NEEKQREEEREQVVSPWEV--SSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVF 61
N + + E V PW V SS+ IDYDKLI +FG ++D+ L++R++R TG+ PH F
Sbjct: 76 NGDPDATKASEDFVDPWTVRTSSAKGIDYDKLIVQFGSSKIDKELINRIERATGQRPHRF 135
Query: 62 LRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPL 121
LRRG+FF+HRD+N ILDAYE + FYLYTGRGPSSEA+HLGHLVPF+FTK+LQD F VPL
Sbjct: 136 LRRGIFFSHRDMNQILDAYENKKPFYLYTGRGPSSEAMHLGHLVPFIFTKWLQDVFDVPL 195
Query: 122 VIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGA--FYKNM 179
VIQ++DDEK +WK+L++E++ ENAKDIIACGFDV KTFIFSD +Y+G + FYKN+
Sbjct: 196 VIQMSDDEKYLWKDLTLEQAYSYTVENAKDIIACGFDVNKTFIFSDLEYMGQSPGFYKNV 255
Query: 180 VKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAI 239
VK+ K VT+N+V GIFGFT D IGK+SFP VQA PSF +SFP +F + ++CLIPCAI
Sbjct: 256 VKIQKHVTFNQVKGIFGFTDSDCIGKISFPAVQAAPSFSNSFPKIFRDRTDIQCLIPCAI 315
Query: 240 DQVGSPFF 247
DQ P+F
Sbjct: 316 DQ--DPYF 321
>sp|P17248|SYWC_BOVIN Tryptophan--tRNA ligase, cytoplasmic OS=Bos taurus GN=WARS PE=1
SV=3
Length = 476
Score = 317 bits (812), Expect = 5e-86, Method: Compositional matrix adjust.
Identities = 149/241 (61%), Positives = 191/241 (79%), Gaps = 6/241 (2%)
Query: 11 EEREQVVSPWEV--SSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFF 68
E E V PW V SS+ IDYDKLI +FG ++D+ LV+R++R TG+ PH FLRRG+FF
Sbjct: 84 EADEDFVDPWTVQTSSAKGIDYDKLIVRFGSSKIDKELVNRIERATGQRPHRFLRRGIFF 143
Query: 69 AHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDD 128
+HRD++ ILDAYE + FYLYTGRGPSSEA+H+GHL+PF+FTK+LQD F VPLVIQ+TDD
Sbjct: 144 SHRDMHQILDAYENKKPFYLYTGRGPSSEAMHVGHLIPFIFTKWLQDVFNVPLVIQMTDD 203
Query: 129 EKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGA--FYKNMVKVAKCV 186
EK +WK+L+++++ A ENAKDIIACGFD+ KTFIFSD DY+G + FYKN+VK+ K V
Sbjct: 204 EKYLWKDLTLDQAYGYAVENAKDIIACGFDINKTFIFSDLDYMGMSPGFYKNVVKIQKHV 263
Query: 187 TYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQVGSPF 246
T+N+V GIFGFT D IGK+SFP +QA PSF +SFP +F + ++CLIPCAIDQ P+
Sbjct: 264 TFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDVQCLIPCAIDQ--DPY 321
Query: 247 F 247
F
Sbjct: 322 F 322
>sp|P32921|SYWC_MOUSE Tryptophan--tRNA ligase, cytoplasmic OS=Mus musculus GN=Wars PE=1
SV=2
Length = 481
Score = 317 bits (812), Expect = 5e-86, Method: Compositional matrix adjust.
Identities = 149/249 (59%), Positives = 193/249 (77%), Gaps = 6/249 (2%)
Query: 3 KNEEKQREEEREQVVSPWEV--SSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHV 60
+N + + E V PW V SS+ IDYDKLI +FG ++D+ L++R++R TG+ PH
Sbjct: 75 RNCDSDATKASEDFVDPWTVRTSSAKGIDYDKLIVQFGSSKIDKELINRIERATGQRPHR 134
Query: 61 FLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVP 120
FLRRG+FF+HRD+N ILDAYE + FYLYTGRGPSSEA+HLGHLVPF+FTK+LQD F VP
Sbjct: 135 FLRRGIFFSHRDMNQILDAYENKKPFYLYTGRGPSSEAMHLGHLVPFIFTKWLQDVFNVP 194
Query: 121 LVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGA--FYKN 178
LVIQ++DDEK +WK+L++E++ ENAKDIIACGFD+ KTFIFSD +Y+G + FY+N
Sbjct: 195 LVIQMSDDEKYLWKDLTLEQAYSYTVENAKDIIACGFDINKTFIFSDLEYMGQSPGFYRN 254
Query: 179 MVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCA 238
+VK+ K VT+N+V GIFGFT D IGK+SFP VQA PSF +SFP +F + ++CLIPCA
Sbjct: 255 VVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAVQAAPSFSNSFPKIFRDRTDIQCLIPCA 314
Query: 239 IDQVGSPFF 247
IDQ P+F
Sbjct: 315 IDQ--DPYF 321
>sp|Q09692|SYWC_SCHPO Tryptophan--tRNA ligase, cytoplasmic OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=wrs1 PE=1 SV=1
Length = 395
Score = 295 bits (754), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 139/241 (57%), Positives = 183/241 (75%), Gaps = 9/241 (3%)
Query: 14 EQVVSPWEVSSS------GKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVF 67
EQ+V+PW+V S IDY++LI +FG +++ ++R ++LTG+ PH+ LRRG F
Sbjct: 5 EQIVTPWDVKGSIVDGEEKGIDYERLIVQFGTRKITPEQLERFEKLTGKKPHLLLRRGAF 64
Query: 68 FAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTD 127
F+HRD + ILD YE+ + FYLYTGRGPSS+++HLGH++PFMF K+LQD F+VPLVIQLTD
Sbjct: 65 FSHRDFDMILDRYEQKKPFYLYTGRGPSSDSMHLGHMIPFMFCKWLQDVFQVPLVIQLTD 124
Query: 128 DEKCMWKN-LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCV 186
DEK ++K +S+E+ QR ARENAKDIIA GFD KTFIF + YVGGAFY+N+V++AKC+
Sbjct: 125 DEKFLFKQGVSLEDCQRFARENAKDIIAVGFDPKKTFIFMNSTYVGGAFYQNVVRIAKCI 184
Query: 187 TYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQVGSPF 246
T N+ FGFT D IGK+ F +QA PSF SSFPH+F+G + CLIPCAIDQ P+
Sbjct: 185 TANQSKACFGFTDSDSIGKIHFASIQAAPSFSSSFPHIFNGAKDIPCLIPCAIDQ--DPY 242
Query: 247 F 247
F
Sbjct: 243 F 243
>sp|Q55DZ8|SYWC_DICDI Tryptophan--tRNA ligase, cytoplasmic OS=Dictyostelium discoideum
GN=trpS PE=3 SV=1
Length = 400
Score = 291 bits (745), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 133/239 (55%), Positives = 180/239 (75%), Gaps = 9/239 (3%)
Query: 15 QVVSPWEVSSS--GKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRD 72
QV++PWEV ++ G +DY KL+D+FG + + L+ R +++TG+ H FLRRG+FF+HRD
Sbjct: 14 QVITPWEVEAAPGGSVDYMKLVDQFGSTVISEELIARFEKVTGKRAHHFLRRGIFFSHRD 73
Query: 73 LNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCM 132
L +ILD +E G+K++LYTGRGPSS +LH GHL+PF FTKYLQDAF VPLV+Q+T+DEK +
Sbjct: 74 LKEILDHHESGKKWFLYTGRGPSSGSLHFGHLLPFTFTKYLQDAFNVPLVVQMTNDEKFL 133
Query: 133 WKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVV 192
WK++++EES + N KDIIA GFD+ KTFIFS+ +Y+ Y N++K+A+CV N++
Sbjct: 134 WKDMTLEESIKFTHNNVKDIIALGFDIQKTFIFSNLEYI-HHLYPNVLKIARCVNLNQIQ 192
Query: 193 GIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKD----HLRCLIPCAIDQVGSPFF 247
IFGF D IGK +FPPVQA P FP SFPH+F D ++RCLIPCAIDQ P+F
Sbjct: 193 NIFGFKESDAIGKFTFPPVQAAPCFPDSFPHIFPLNDPEIKNIRCLIPCAIDQ--DPYF 249
>sp|Q12109|SYWC_YEAST Tryptophan--tRNA ligase, cytoplasmic OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=WRS1 PE=1 SV=1
Length = 432
Score = 267 bits (682), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 127/245 (51%), Positives = 176/245 (71%), Gaps = 10/245 (4%)
Query: 13 REQVVSPWEVSS-------SGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRG 65
+EQVV+PW+V + IDYDKLI +FG + +++ + R +++TGR PH FLR+G
Sbjct: 23 KEQVVTPWDVEGGVDEQGRAQNIDYDKLIKQFGTKPVNEETLKRFKQVTGREPHHFLRKG 82
Query: 66 VFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQL 125
+FF+ RD ILD YE+G+ F+LYTGRGPSS+++HLGH++PF+FTK+LQ+ F VPLVI+L
Sbjct: 83 LFFSERDFTKILDLYEQGKPFFLYTGRGPSSDSMHLGHMIPFVFTKWLQEVFDVPLVIEL 142
Query: 126 TDDEKCMWKN-LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAK 184
TDDEK ++K+ L++ + + ARENAKDIIA GFD TFIFSD Y+GGAFY+ +V+V++
Sbjct: 143 TDDEKFLFKHKLTINDVKNFARENAKDIIAVGFDPKNTFIFSDLQYMGGAFYETVVRVSR 202
Query: 185 CVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQVGS 244
+T + +FGF D IGK F +Q +FPSSFP++ D CLIPCAIDQ
Sbjct: 203 QITGSTAKAVFGFNDSDCIGKFHFASIQIATAFPSSFPNVLGLPDKTPCLIPCAIDQ--D 260
Query: 245 PFFLV 249
P+F V
Sbjct: 261 PYFRV 265
>sp|O96771|SYW_ENCCU Tryptophan--tRNA ligase OS=Encephalitozoon cuniculi (strain GB-M1)
GN=ECU11_0530 PE=1 SV=2
Length = 385
Score = 241 bits (616), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 115/240 (47%), Positives = 166/240 (69%), Gaps = 12/240 (5%)
Query: 14 EQVVSPW--EVSSSGK----IDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVF 67
EQ ++PW EV S+ + IDYDK+I++FGC++ +Q+L DR+++L+G+P H F RRG+
Sbjct: 3 EQRITPWDVEVVSTDEVPVAIDYDKIINQFGCEKFNQALADRLEKLSGKPAHYFFRRGIV 62
Query: 68 FAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTD 127
FAHRD N +LD FYLYTGRGPSS+ +H+GH +PF+ KY+QDAFK+ LVIQ+TD
Sbjct: 63 FAHRDFNLLLDEIANNRPFYLYTGRGPSSKTMHIGHTIPFLLCKYMQDAFKIRLVIQITD 122
Query: 128 DEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVT 187
DEK +WK++ +E++ REN KDI+A GFD T+IFS+ + F +N++K++K +
Sbjct: 123 DEKFLWKSMRLEDAMAYGRENIKDIVALGFDPKLTYIFSNVE-ASHHFEENILKISKTIN 181
Query: 188 YNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQVGSPFF 247
N+ + +FGF +IG+V FP + P F SSF F GK + CL+P A+DQ PFF
Sbjct: 182 LNEAIKVFGFDMSSNIGQVGFPAKEIAPCFSSSFR--FIGKGAM-CLVPAAVDQ--DPFF 236
>sp|Q4JBG7|SYW_SULAC Tryptophan--tRNA ligase OS=Sulfolobus acidocaldarius (strain ATCC
33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770)
GN=trpS PE=3 SV=1
Length = 381
Score = 200 bits (509), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 105/227 (46%), Positives = 147/227 (64%), Gaps = 15/227 (6%)
Query: 16 VVSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLND 75
V+PWEV GK+DYDKLI +FG Q++ L +R +R HV LRR VFF+HRD +
Sbjct: 6 TVTPWEVK--GKVDYDKLIVQFGTQKMTSELKERAKRAINDELHVMLRRDVFFSHRDFDL 63
Query: 76 ILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWK- 134
IL+ YEKG F+LYTGR PS +H+GHL+PF+FTK+LQ+ FKV + I++TDDEK +
Sbjct: 64 ILNDYEKGNGFFLYTGRAPSL-GMHIGHLIPFIFTKWLQEKFKVNVYIEITDDEKFLRNV 122
Query: 135 NLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGI 194
+ ++++++ + EN DIIA GFD KTFIF D +Y+ Y VK+AK +T+N+V
Sbjct: 123 DYTLDQTKEWSYENILDIIAVGFDPNKTFIFQDTEYIKN-MYPLSVKIAKKLTFNEVRAT 181
Query: 195 FGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQ 241
FG +IG + +P +Q VP+ +F + RCLIP IDQ
Sbjct: 182 FGLDTSSNIGIIFYPALQIVPT-------MFEKR---RCLIPAGIDQ 218
>sp|Q8U453|SYW_PYRFU Tryptophan--tRNA ligase OS=Pyrococcus furiosus (strain ATCC 43587 /
DSM 3638 / JCM 8422 / Vc1) GN=trpS PE=3 SV=1
Length = 385
Score = 200 bits (508), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 107/231 (46%), Positives = 148/231 (64%), Gaps = 16/231 (6%)
Query: 12 EREQVVSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHR 71
E E V+PWEV G IDY+KLI++FG L L++R RLT +F RR FF+HR
Sbjct: 2 EEEFKVTPWEVE--GIIDYNKLIEQFGTSPLTDDLLERTARLTKSELPIFFRRKFFFSHR 59
Query: 72 DLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKC 131
D + +LD YE+G+ F+LYTGRGPS +H+GH++PF TK+LQ+ F V L IQ+TDDEK
Sbjct: 60 DYDKVLDDYEQGKGFFLYTGRGPSG-PMHIGHIIPFFATKWLQEKFDVNLYIQITDDEKF 118
Query: 132 MWK-NLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNK 190
++K NL+ E+++ A +N DIIA GFD KTFIF + ++ Y+ + +AK + ++
Sbjct: 119 LFKENLTFEDTKYWAYQNILDIIAVGFDPDKTFIFQNSEFT--KIYEMAIPIAKKINFSM 176
Query: 191 VVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQ 241
+FGFT + IG + FP +QA P+F F K RCLIP AIDQ
Sbjct: 177 AKAVFGFTEQSKIGMIFFPAIQAAPTF-------FEKK---RCLIPAAIDQ 217
>sp|Q97ZX0|SYW_SULSO Tryptophan--tRNA ligase OS=Sulfolobus solfataricus (strain ATCC
35092 / DSM 1617 / JCM 11322 / P2) GN=trpS PE=3 SV=2
Length = 380
Score = 194 bits (494), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 104/229 (45%), Positives = 147/229 (64%), Gaps = 16/229 (6%)
Query: 14 EQVVSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDL 73
E V+PWEV GK+DYDKLI +FG Q++ + L R++ L G HV LRR VFF+HRDL
Sbjct: 4 EFTVTPWEVK--GKVDYDKLIVQFGTQKITEELKQRIKNLAGDL-HVMLRRNVFFSHRDL 60
Query: 74 NDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMW 133
+ +L+ YEK + F+LYTGR PS +H+GHL+PF+FTK+LQ+ F L I++TDDEK M
Sbjct: 61 DLVLNDYEKSKGFFLYTGRAPSL-GMHIGHLIPFIFTKWLQEKFNANLYIEITDDEKYMR 119
Query: 134 K-NLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVV 192
++++++ A +N DIIA GF+ KTFIF D +Y+ Y VK+AK +T+++V
Sbjct: 120 NPEFTLDQTRSWAYDNILDIIAVGFNPDKTFIFQDTEYIRN-MYPITVKIAKKLTFSEVR 178
Query: 193 GIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQ 241
FG +IG + +P +Q P+ +F K RCLIP IDQ
Sbjct: 179 ATFGLDASSNIGLIFYPALQIAPT-------MFEKK---RCLIPAGIDQ 217
>sp|Q976M1|SYW_SULTO Tryptophan--tRNA ligase OS=Sulfolobus tokodaii (strain DSM 16993 /
JCM 10545 / NBRC 100140 / 7) GN=trpS PE=3 SV=2
Length = 381
Score = 192 bits (487), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 99/226 (43%), Positives = 146/226 (64%), Gaps = 15/226 (6%)
Query: 17 VSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDI 76
V+PWEV GK+DYDKLI +FG Q++ L ++++ + HV LRR VFF+HRDL+ +
Sbjct: 7 VTPWEVK--GKVDYDKLIVQFGTQKITSELKEKIKSIINDELHVMLRRDVFFSHRDLDLV 64
Query: 77 LDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWK-N 135
L Y+ G+ F+LYTGR PS +H+GHL+PF+FTK+LQD F V L I++TDDEK M
Sbjct: 65 LKDYQDGKGFFLYTGRAPSL-GMHIGHLIPFIFTKWLQDKFNVNLYIEITDDEKFMRNPE 123
Query: 136 LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIF 195
+++++++ A +N DIIA GF+ KTFIF D +Y+ Y +K+AK +T+++V F
Sbjct: 124 YTLDQTRQWAYDNILDIIAVGFNPDKTFIFQDTEYIRN-MYPIAIKIAKKLTFSEVRATF 182
Query: 196 GFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQ 241
G +IG + +P +Q P+ +F + RCLIP IDQ
Sbjct: 183 GLDTSSNIGIIWYPALQIAPT-------MFEKR---RCLIPAGIDQ 218
>sp|O59584|SYW_PYRHO Tryptophan--tRNA ligase OS=Pyrococcus horikoshii (strain ATCC
700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=trpS PE=1 SV=2
Length = 386
Score = 191 bits (484), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 102/226 (45%), Positives = 142/226 (62%), Gaps = 16/226 (7%)
Query: 17 VSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDI 76
V+PWEV G +DYDKLI FG L + L+++ LT +F RR FF+HRD + I
Sbjct: 7 VTPWEVE--GVVDYDKLIKHFGTSPLTEDLLEKTAELTKSELPIFFRRKFFFSHRDYDLI 64
Query: 77 LDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWK-N 135
L YE+G F+LYTGRGPS +H+GH++PF TK+LQ+ F V L IQ+TDDEK ++K N
Sbjct: 65 LKDYEEGRGFFLYTGRGPSG-PMHIGHIIPFFATKWLQEKFGVNLYIQITDDEKFLFKEN 123
Query: 136 LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIF 195
L+ ++++R A +N DIIA GFD KTFIF + ++ Y+ + +AK + ++ +F
Sbjct: 124 LTFDDTKRWAYDNILDIIAVGFDPDKTFIFQNSEFT--KIYEMAIPIAKKINFSMAKAVF 181
Query: 196 GFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQ 241
GFT + IG + FP +Q P+F F K RCLIP AIDQ
Sbjct: 182 GFTEQSKIGMIFFPAIQIAPTF-------FERK---RCLIPAAIDQ 217
>sp|Q9UY11|SYW_PYRAB Tryptophan--tRNA ligase OS=Pyrococcus abyssi (strain GE5 / Orsay)
GN=trpS PE=3 SV=1
Length = 385
Score = 190 bits (483), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 99/226 (43%), Positives = 141/226 (62%), Gaps = 16/226 (7%)
Query: 17 VSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDI 76
V+PWEV G +DY+KLI+ FG L + L+++ LT +F RR FF+HRD + +
Sbjct: 7 VTPWEVE--GVVDYNKLIEHFGTSPLTEELLEKTAELTKSELPLFFRRKFFFSHRDYDKV 64
Query: 77 LDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWK-N 135
L YE+G F+LYTGRGPS +H+GH++PF TK+LQ+ F V L IQ+TDDEK ++K N
Sbjct: 65 LQDYEEGRGFFLYTGRGPSG-PMHIGHIIPFFATKWLQEKFGVNLYIQITDDEKFLFKEN 123
Query: 136 LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIF 195
L+ E+++ A EN DIIA GFD KTFIF + ++ Y+ + +AK + ++ +F
Sbjct: 124 LTFEDTKHWAYENILDIIAVGFDPDKTFIFQNSEFT--KIYEMAIPIAKKINFSMAKAVF 181
Query: 196 GFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQ 241
GFT + IG + FP +Q P+F + RCLIP AIDQ
Sbjct: 182 GFTEQSKIGMIFFPAIQIAPTF----------FEKRRCLIPAAIDQ 217
>sp|C6A032|SYW_THESM Tryptophan--tRNA ligase OS=Thermococcus sibiricus (strain MM 739 /
DSM 12597) GN=trpS PE=3 SV=1
Length = 384
Score = 188 bits (477), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 101/226 (44%), Positives = 143/226 (63%), Gaps = 16/226 (7%)
Query: 17 VSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDI 76
V+PWEV+ G +DY+KLI++FG L L+ + + LT + ++ +R FF+HRD + +
Sbjct: 6 VTPWEVT--GVVDYNKLIEEFGTTPLTDDLLKKTEELTKKELPMYFKRKFFFSHRDYDLV 63
Query: 77 LDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWK-N 135
L YE G+ F+LYTGRGPS +H+GH++PF TK+LQ+ F V L +Q+TDDEK ++K
Sbjct: 64 LKDYEAGKGFFLYTGRGPSG-PMHIGHIIPFFATKWLQENFGVNLYVQITDDEKFLFKPQ 122
Query: 136 LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIF 195
L+ E ++R A EN DIIA GFD KTFIF D ++ Y+ + +AK VTY+ +F
Sbjct: 123 LTFEGTKRWAYENILDIIAVGFDPDKTFIFQDSEFT--KIYEMAIPIAKKVTYSMAKAVF 180
Query: 196 GFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQ 241
GF + IG + FP +QA P+F F K R LIP AIDQ
Sbjct: 181 GFNEQSKIGMIFFPAIQAAPTF-------FEEK---RSLIPAAIDQ 216
>sp|B6YUH1|SYW_THEON Tryptophan--tRNA ligase OS=Thermococcus onnurineus (strain NA1)
GN=trpS PE=3 SV=1
Length = 384
Score = 175 bits (443), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 97/226 (42%), Positives = 144/226 (63%), Gaps = 16/226 (7%)
Query: 17 VSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDI 76
V+PW+V G +DY+KLI++FG L L+++ +LT ++ RR FF+HRD + +
Sbjct: 6 VTPWDVE--GLVDYNKLIEEFGTSPLTDELLEKTAQLTKSELPLYFRRRFFFSHRDYDKV 63
Query: 77 LDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKN- 135
L YE G+ F+LYTGRGPS +H+GH++PF TK+LQ+ F V L IQ+TDDEK ++K+
Sbjct: 64 LQDYESGKGFFLYTGRGPSG-PMHIGHIIPFFATKWLQEKFGVNLYIQITDDEKFLFKDK 122
Query: 136 LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIF 195
L+ E+++ A +N DIIA GFD +TFIF D ++ Y+ + +AK + ++ +F
Sbjct: 123 LTFEDTKYWAYQNILDIIAVGFDPDRTFIFQDSEFT--KIYEMAIPIAKKINFSMAKAVF 180
Query: 196 GFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQ 241
GFT + IG + +P +QA P+F F K RCLIP AIDQ
Sbjct: 181 GFTEQSKIGMIFYPAIQAAPTF-------FEKK---RCLIPAAIDQ 216
>sp|Q5JEP3|SYW_PYRKO Tryptophan--tRNA ligase OS=Pyrococcus kodakaraensis (strain ATCC
BAA-918 / JCM 12380 / KOD1) GN=trpS PE=3 SV=1
Length = 384
Score = 174 bits (441), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 100/226 (44%), Positives = 141/226 (62%), Gaps = 16/226 (7%)
Query: 17 VSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDI 76
V+PW+V G +DY+KLI++FG L L+++ LT +F RR FF+HRD + +
Sbjct: 6 VTPWDVE--GVVDYNKLIEQFGTSPLTDELIEKTAELTKSELPLFFRRRFFFSHRDYDKV 63
Query: 77 LDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWK-N 135
L YE G F+LYTGRGPS +H+GH++PF TK+LQ+ F V L IQ+TDDEK ++K
Sbjct: 64 LADYESGRGFFLYTGRGPSG-PMHIGHIIPFFATKWLQENFDVNLYIQITDDEKFLFKEK 122
Query: 136 LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIF 195
LS E+++R A EN DIIA GFD KTFIF + ++ Y+ + +AK + ++ +F
Sbjct: 123 LSFEDTKRWAYENILDIIAVGFDPDKTFIFQNSEFT--KIYEMALPIAKKINFSMARAVF 180
Query: 196 GFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQ 241
GF + IG + +P +QA P+F F K RCLIP AIDQ
Sbjct: 181 GFNEQSKIGMIFYPAIQAAPTF-------FEKK---RCLIPAAIDQ 216
>sp|A3MX72|SYW_PYRCJ Tryptophan--tRNA ligase OS=Pyrobaculum calidifontis (strain JCM
11548 / VA1) GN=trpS PE=3 SV=1
Length = 374
Score = 162 bits (411), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 97/237 (40%), Positives = 139/237 (58%), Gaps = 12/237 (5%)
Query: 12 EREQVVSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHR 71
+ E VV+PWEV G++DY KL+ +FG + L Q+ V +++ G H +RRG F+AHR
Sbjct: 2 DEEFVVTPWEVR--GRVDYQKLMQQFGARPLTQAEVSLLEKYAGEV-HPLIRRGFFYAHR 58
Query: 72 DLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKC 131
DL+ IL + +G+ + LYTGRGPS +H+GH+VP++ K+L D F V + Q+TDDEK
Sbjct: 59 DLDAILKWHGEGKPWALYTGRGPSG-PVHIGHMVPWILLKWLSDKFGVEVYFQMTDDEKF 117
Query: 132 M-WKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNK 190
+ +EE+ + A ENA D+IA GF K + D + Y KVAK +T+N
Sbjct: 118 YDDPEMRLEEATKWAYENALDVIALGFTPDKLHLIIDTKDI-KPLYPIAAKVAKKLTWNT 176
Query: 191 VVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQVGSPFF 247
V FGFT +IG + +P +Q +F P G+ LIPCAIDQ P+F
Sbjct: 177 VKATFGFTDSTNIGLIFYPSLQIAVAF---LPTELHGRP-TPVLIPCAIDQ--DPYF 227
>sp|A4WL99|SYW_PYRAR Tryptophan--tRNA ligase OS=Pyrobaculum arsenaticum (strain DSM
13514 / JCM 11321) GN=trpS PE=3 SV=1
Length = 374
Score = 154 bits (388), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 94/234 (40%), Positives = 134/234 (57%), Gaps = 14/234 (5%)
Query: 16 VVSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLND 75
VV+PWEV GK+DY+KL+ +FG + L V +++ G H ++RG F+AHRD +
Sbjct: 6 VVTPWEVR--GKVDYEKLLRQFGAKPLTAEEVALLEKYAGDV-HPLIKRGFFYAHRDFDF 62
Query: 76 ILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWK- 134
IL + +G + LYTGRGPS +H+GH+VP++ K+ D F V + Q+TDDEK
Sbjct: 63 ILKWHGEGRPWALYTGRGPSG-PVHIGHMVPWILLKWFSDKFGVEVYFQMTDDEKFFDDP 121
Query: 135 NLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGI 194
+ +EE+ A ENA D+IA GF K + D + Y V+VAK +T+N V
Sbjct: 122 EMKLEEATGWAYENALDVIALGFGPDKLHLIVDTKDI-APLYPIAVRVAKKLTWNTVKAT 180
Query: 195 FGFTGEDHIGKVSFPPVQ-AVPSFPSSFPHLFSGKDHLRCLIPCAIDQVGSPFF 247
FGFT +IG + +P +Q AV P+ K+ LIPCAIDQ P+F
Sbjct: 181 FGFTDSSNIGLIFYPSLQIAVAFLPTEL-----KKEPTPVLIPCAIDQ--DPYF 227
>sp|Q8ZTU5|SYW_PYRAE Tryptophan--tRNA ligase OS=Pyrobaculum aerophilum (strain ATCC
51768 / IM2 / DSM 7523 / JCM 9630 / NBRC 100827) GN=trpS
PE=3 SV=1
Length = 375
Score = 153 bits (387), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 92/238 (38%), Positives = 136/238 (57%), Gaps = 14/238 (5%)
Query: 12 EREQVVSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHR 71
E E VV+PWEV G++DY+KL+ FG + L + V +++ G H +RRG F+AHR
Sbjct: 2 EEEFVVTPWEVR--GRVDYEKLLKHFGAKPLTKDEVALLEKYAGEV-HPLIRRGFFYAHR 58
Query: 72 DLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKC 131
D + I+ + +G + LYTGRGPS +H+GH+VP++ K+ D F + + Q+TDDEK
Sbjct: 59 DFDFIMKWHGEGRPWALYTGRGPSG-PVHIGHMVPWILLKWFSDKFGLEVYFQITDDEKF 117
Query: 132 MWK-NLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNK 190
+ +EE+ A ENA D+IA GF + + D + Y V+VAK +T+N
Sbjct: 118 YDDPEMKLEEATNWAYENALDVIALGFSPERLHLIIDTKDI-KPLYPIAVRVAKKLTWNT 176
Query: 191 VVGIFGFTGEDHIGKVSFPPVQ-AVPSFPSSFPHLFSGKDHLRCLIPCAIDQVGSPFF 247
V FGFT +IG + +P +Q AV P+ ++ LIPCAIDQ P+F
Sbjct: 177 VKATFGFTDSTNIGLIFYPSLQIAVAFLPTEL-----RREATPVLIPCAIDQ--DPYF 227
>sp|Q9HN66|SYW2_HALSA Tryptophan--tRNA ligase 2 OS=Halobacterium salinarum (strain ATCC
700922 / JCM 11081 / NRC-1) GN=trpS2 PE=3 SV=1
Length = 380
Score = 103 bits (258), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 74/225 (32%), Positives = 112/225 (49%), Gaps = 20/225 (8%)
Query: 17 VSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDI 76
V+P+ V S +DY+KL+ +FG L D+ R P H + RG+F+A RD++D
Sbjct: 8 VTPYAVESD-DLDYEKLLARFGADELTD---DQRARF---PDHPLVNRGLFYAGRDVDDF 60
Query: 77 LDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNL 136
L A E+ + TG GPS +HLGH + F F + LQD F + + L+DDEK +K+
Sbjct: 61 LTAGEQS----IVTGVGPSG-PMHLGHAMVFYFARRLQDEFGARVYVPLSDDEKYWFKDQ 115
Query: 137 SVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFG 196
+ E+ R N +D++A GFD T I D Y A V + + ++G
Sbjct: 116 TPAETGDYLRANLRDLLAVGFDPELTRIVVDT-RDADVLYPLATAFAGDVRHATLQNVYG 174
Query: 197 FTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQ 241
D++G+ +P VQ P L G+ L+P A+DQ
Sbjct: 175 --EPDNVGQAFYPAVQTAHLL---LPQLVHGEHE--TLVPIAVDQ 212
>sp|Q8TYF7|SYW_METKA Tryptophan--tRNA ligase OS=Methanopyrus kandleri (strain AV19 / DSM
6324 / JCM 9639 / NBRC 100938) GN=trpS PE=3 SV=1
Length = 374
Score = 83.2 bits (204), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/227 (26%), Positives = 104/227 (45%), Gaps = 15/227 (6%)
Query: 16 VVSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLND 75
++ PW+V ++DY++L ++FG + +D+ + + + R R P L RG+ F HRD +
Sbjct: 1 MIDPWDVE---EVDYERLTEEFGIRPIDEKVRELLPR---RFP--LLDRGIVFGHRDYDS 52
Query: 76 ILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKN 135
L Y G+ + +G PS +HLGH + Q V + + + D E +N
Sbjct: 53 FLKDYNDGKLVSVLSGMMPSGR-MHLGHKTVVDQLVFYQQEMDVKVYVPIADLEAHHARN 111
Query: 136 LSVEESQRLA-RENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGI 194
+ ++ + R+A E + A G D+ + + +A +T+N V
Sbjct: 112 MDLDRAHRIAVEEYVLNYAALGLDLDPDRCEIYLQSERKTVQRMALLLAGRLTWNTVKNT 171
Query: 195 FGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQ 241
+GFTGE ++G P VQA P G R L+P +DQ
Sbjct: 172 YGFTGETNMGHAFAPIVQAADIL---HPQEIEGPH--RVLVPVGVDQ 213
>sp|O26352|SYW_METTH Tryptophan--tRNA ligase OS=Methanothermobacter thermautotrophicus
(strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330
/ Delta H) GN=trpS PE=3 SV=1
Length = 364
Score = 80.5 bits (197), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 94/210 (44%), Gaps = 36/210 (17%)
Query: 16 VVSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLND 75
++ PW S K++Y LI+ FG + + L D V P +RRG+ F HRD
Sbjct: 1 MIDPW---GSAKLEYQDLIENFGVRPFSEVL-DEVPE-----PSWLMRRGIIFGHRDYER 51
Query: 76 ILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQ--DAFKVPLVIQLTDDEKCMW 133
I+ A +KGE F + TG PS +H+GH M L+ D + I + D E
Sbjct: 52 IISAMKKGEDFAVVTGMMPSGR-MHIGHK---MIVDQLRWYDRMGAEIFIPIADMEAYSA 107
Query: 134 KNLSVEESQRLA-RENAKDIIACGFDVTK----------TFIFSDFDYVGGAFYKNMVKV 182
+ + E+S+R+A E IA G D+ K + D YV +
Sbjct: 108 RGVDFEDSRRIAIEEYIAGYIALGLDLEKDNIHVYLQSENLMVEDLAYV----------L 157
Query: 183 AKCVTYNKVVGIFGFTGEDHIGKVSFPPVQ 212
A V +N++ I+GFTG + + P +Q
Sbjct: 158 AGKVNFNELRAIYGFTGSTSMAHMYAPIIQ 187
>sp|Q58810|SYW_METJA Tryptophan--tRNA ligase OS=Methanocaldococcus jannaschii (strain
ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
GN=trpS PE=3 SV=1
Length = 370
Score = 79.7 bits (195), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/204 (29%), Positives = 101/204 (49%), Gaps = 23/204 (11%)
Query: 17 VSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDI 76
++PWE + IDY K +++FG + +VD + L + H F RR + HRD I
Sbjct: 6 LTPWETPAV--IDYKKTMEQFGVK----PIVDVLGDL--KEEHHFFRRNIILGHRDFERI 57
Query: 77 LDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQ---DAFKVPLVIQLTDDEKCMW 133
+DA + ++F + +G PS + +H GH + K+ Q D +P+ D + W
Sbjct: 58 VDAIKNNKEFAVVSGMMPSGK-MHFGHKMVVDLLKFYQKYTDNINIPIA-----DLEAYW 111
Query: 134 -KNLSVEESQRLA-RENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKV-AKCVTYNK 190
+N+S E ++ LA E + IA G D K ++ Y K++ + +K +++
Sbjct: 112 ARNMSFETTKELALNEYITNYIALGLDPEKINVYLQSKYQK---VKDLALILSKRTNWSE 168
Query: 191 VVGIFGFTGEDHIGKVSFPPVQAV 214
+ I+GF GE +IG V P VQ
Sbjct: 169 MKAIYGFKGETNIGHVFAPIVQVA 192
>sp|O28579|SYW_ARCFU Tryptophan--tRNA ligase OS=Archaeoglobus fulgidus (strain ATCC
49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=trpS PE=3 SV=1
Length = 420
Score = 77.0 bits (188), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 59/201 (29%), Positives = 94/201 (46%), Gaps = 19/201 (9%)
Query: 17 VSPWEVSSSGKIDYDKLIDKFGCQRLDQSL--VDRVQRLTGRPPHVFLRRGVFFAHRDLN 74
V+PWEV G IDY KLI++FG Q + L +D PH+ +RRG F HRD
Sbjct: 3 VTPWEVE--GVIDYSKLIEEFGMQPFSEVLPEIDN--------PHILMRRGAIFGHRDYW 52
Query: 75 DILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWK 134
I++A +K E + + +G PS H GH + + Q A V + D E +
Sbjct: 53 RIIEAMQKKEPWAVMSGFMPSG-LPHFGHKMTMDEIVWHQSAGGKAFV-AIADMEAHSVR 110
Query: 135 NLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMV-KVAKCVTYNKVVG 193
LS E+++ L K IIA G F + K++ +++ V ++++
Sbjct: 111 GLSWEKTRELGMLYIKSIIALGLREDAVIYFQS----KSSHVKDLAFELSAEVNFSELRA 166
Query: 194 IFGFTGEDHIGKVSFPPVQAV 214
I+GF + + K+ +QA
Sbjct: 167 IYGFNSDTSLAKMFVTAIQAA 187
>sp|A2BLD4|SYW_HYPBU Tryptophan--tRNA ligase OS=Hyperthermus butylicus (strain DSM 5456
/ JCM 9403) GN=trpS PE=3 SV=1
Length = 373
Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 94/183 (51%), Gaps = 11/183 (6%)
Query: 17 VSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDI 76
+ PW +S+ +++Y+KL FG + Q L+ V++ G+P H +RRG+ F HRD I
Sbjct: 6 LDPW--ASAIRLEYEKLFRYFGIKPF-QPLLPEVEKAFGKP-HRLMRRGIIFGHRDYEKI 61
Query: 77 LDAYEKGEKFYLYTGRGPSSEALHLGH-LVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKN 135
L+AY GE+ L TG PS + H GH +V Y + F++ +VI D E +
Sbjct: 62 LEAYRSGERIALVTGFMPSGK-FHFGHKMVADQIIYYQKLGFEIFVVI--ADAEAYAVRR 118
Query: 136 LSVEESQRLA-RENAKDIIACGFDVTK-TFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVG 193
L + + E ++IA G + K T I+ +Y +Y+ + ++ VT ++
Sbjct: 119 LDRRKIIEIGLYEYVANLIALGLEKNKHTHIYFQTNY-ETPYYRLIQMFSRRVTLEEMSA 177
Query: 194 IFG 196
I+G
Sbjct: 178 IYG 180
>sp|Q9Y924|SYW_AERPE Tryptophan--tRNA ligase OS=Aeropyrum pernix (strain ATCC 700893 /
DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=trpS PE=1
SV=2
Length = 372
Score = 71.2 bits (173), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 86/171 (50%), Gaps = 10/171 (5%)
Query: 29 DYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKGEKFYL 88
DYD+L+ FG + + L + R G P +RRG+ F HRD + IL+A +GE+ +
Sbjct: 16 DYDRLLRTFGIRPFSEVLP--LLRKAGMEPSFLMRRGIIFGHRDFDKILEAKARGERVAV 73
Query: 89 YTGRGPSSEALHLGHLVPFMFTKYLQ-DAFKVPLVIQLTDDEKCMWKNLSVEESQRLA-R 146
TG PS + H GH + YLQ + FKV + + D E + + EE+ R+A
Sbjct: 74 LTGFMPSGK-FHFGHKLTVDQLIYLQKNGFKV--FVAIADAEAFAVRRIGREEAVRIAVE 130
Query: 147 ENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKV-AKCVTYNKVVGIFG 196
E ++IA G D T + F G Y ++++ + VT ++ I+G
Sbjct: 131 EYIANMIALGLDPKDTEFY--FQTNRGTPYFRLIQLFSGKVTAAEMEAIYG 179
>sp|Q8TUA1|SYW_METAC Tryptophan--tRNA ligase OS=Methanosarcina acetivorans (strain ATCC
35395 / DSM 2834 / JCM 12185 / C2A) GN=trpS PE=3 SV=1
Length = 437
Score = 60.8 bits (146), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 87/200 (43%), Gaps = 16/200 (8%)
Query: 17 VSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDI 76
+ PW SSS DY KL ++FG + L + PH+++RR V F HRD I
Sbjct: 5 LDPW--SSSDITDYSKLFEEFGISPFENVLPEIPS------PHMYMRRKVIFGHRDYEQI 56
Query: 77 LDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNL 136
+A G F + G PS + +HLGH + + Q+ + + D E +
Sbjct: 57 AEAMRTGAPFSVMDGFMPSGK-VHLGHKMVMDQIVWHQE-MGASAFVGIADREAFSVRGF 114
Query: 137 SVEESQRLA-RENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMV-KVAKCVTYNKVVGI 194
S ++ + + E +IA GF F G K++ ++ V ++++ I
Sbjct: 115 SWQKCREIGVEEYILSLIALGFKPDGLIYFQS----GCGSVKDLAFELGAKVNFSELSAI 170
Query: 195 FGFTGEDHIGKVSFPPVQAV 214
+GF+GE + + QA
Sbjct: 171 YGFSGETSLSHMLSVATQAA 190
>sp|Q8PWV5|SYW_METMA Tryptophan--tRNA ligase OS=Methanosarcina mazei (strain ATCC
BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88)
GN=trpS PE=3 SV=2
Length = 491
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 86/200 (43%), Gaps = 16/200 (8%)
Query: 17 VSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDI 76
+ PW SSS DY KL ++FG + L + PH ++RR + F HRD I
Sbjct: 5 LDPW--SSSNITDYSKLFEEFGISPFENILPEIPS------PHKYMRRRIIFGHRDYEQI 56
Query: 77 LDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNL 136
+A G F + G PS + +HLGH + + Q+ + + D E +
Sbjct: 57 AEAMRTGAPFSVMDGFMPSGK-VHLGHKMVMDQIVWHQEK-GASAFVGIADREAFSVRGF 114
Query: 137 SVEESQRLA-RENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMV-KVAKCVTYNKVVGI 194
S ++ + + E +IA GF F G K++ ++ V ++++ I
Sbjct: 115 SWQKCREIGVEEYILSLIALGFKPEGLIYFQS----GCGSVKDLAFELGAKVNFSELSAI 170
Query: 195 FGFTGEDHIGKVSFPPVQAV 214
+GF+GE + + QA
Sbjct: 171 YGFSGETSLSHMLSVATQAA 190
>sp|Q9HN83|SYW1_HALSA Tryptophan--tRNA ligase 1 OS=Halobacterium salinarum (strain ATCC
700922 / JCM 11081 / NRC-1) GN=trpS1 PE=3 SV=1
Length = 513
Score = 47.8 bits (112), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 65/155 (41%), Gaps = 20/155 (12%)
Query: 16 VVSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRP-PHVFLRRGVFFAHRDLN 74
+ PW S+ DY L D+FG + + L G P PH +RR + F HRD
Sbjct: 16 ALDPW--GSATISDYRALFDEFGIEAFEDVL-------DGVPTPHSLMRRAIIFGHRDYR 66
Query: 75 DILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQ----DAFKVPLVIQLTDDEK 130
+ A E F +G P+ + H+GH + F + Q DA+ + + D E
Sbjct: 67 RVAAAMRNDEPFAALSGFMPTGDP-HIGHKMVFDELIWHQQQGGDAYAL-----IADLEA 120
Query: 131 CMWKNLSVEESQRLARENAKDIIACGFDVTKTFIF 165
+ L E A + ++A GFD + ++
Sbjct: 121 HSARGLDWAEIDEHAEDYLLSLLALGFDADEGELY 155
>sp|Q978Y8|SYW_THEVO Tryptophan--tRNA ligase OS=Thermoplasma volcanium (strain ATCC
51530 / DSM 4299 / JCM 9571 / NBRC 15438 / GSS1) GN=trpS
PE=3 SV=1
Length = 426
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 58/235 (24%), Positives = 94/235 (40%), Gaps = 31/235 (13%)
Query: 16 VVSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLND 75
+++PW SSS DY++L +FG DQS D + H RR V R
Sbjct: 1 MINPW--SSSDFFDYERLKKEFGIS--DQS--DNID-------HFLFRRKVILGQRGFEY 47
Query: 76 ILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKN 135
I A + KF + TG PS E +HLG+ Y Q + I + D E +
Sbjct: 48 IKYAIDNKIKFNVMTGLMPSGE-MHLGNKSAIDQVIYFQ-KLGGSVSIAVADLESYSTRG 105
Query: 136 LSVEESQRLAREN-AKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGI 194
+ +++++ +A E + IA G + + S V Y + N++ +
Sbjct: 106 IPLDKAREIAIEKYILNYIAMGLQPCEIYFQSKNKDVQFLSYI----LGNWTNMNELKAL 161
Query: 195 FGFTGEDHIGKVSFPPVQAVPSF-----------PSSFPHLFSGKDHLRCLIPCA 238
+GFT + I ++ P +QA P+ P F H+R + A
Sbjct: 162 YGFTDSNDILHINAPLIQAADVLHTQLNNYGGPAPTVVPVGFDQDPHIRLMRDLA 216
>sp|Q03UK8|SYY_LEUMM Tyrosine--tRNA ligase OS=Leuconostoc mesenteroides subsp.
mesenteroides (strain ATCC 8293 / NCDO 523) GN=tyrS PE=3
SV=1
Length = 415
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 52/115 (45%), Gaps = 7/115 (6%)
Query: 64 RGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVI 123
RG D +++A GE Y G P++++LHLGHL+PFM K Q+A ++I
Sbjct: 10 RGALNQVTDEAGLIEAMASGE-IGAYVGTDPTADSLHLGHLIPFMVLKRFQNAGGKAVII 68
Query: 124 ------QLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVG 172
+ D + L E R + + + F KT I ++ D++G
Sbjct: 69 IGGATGAIGDPRPTTERQLLSPEQLRQNEKGITEQVTKLFGDEKTAIVNNNDWLG 123
>sp|Q8TSI1|SYY_METAC Tyrosine--tRNA ligase OS=Methanosarcina acetivorans (strain ATCC
35395 / DSM 2834 / JCM 12185 / C2A) GN=tyrS PE=3 SV=1
Length = 317
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 71/133 (53%), Gaps = 11/133 (8%)
Query: 89 YTGRGPSSEALHLGHLVPFMFTKYLQDA-FKVPLVIQLTDDEKCMWKNLSVEESQRLARE 147
Y G PS + +H+GH++ LQ A FK+ ++ L D + K ++EE +++A
Sbjct: 33 YVGYEPSGK-IHMGHVLTVNKLIDLQKAGFKITVL--LADVHAYLNKKGTLEEVRKIADY 89
Query: 148 NAKDIIACGFDVTKT-FIF-SDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTG----ED 201
N + IA G D +T F++ SDF +G + N++K+++ VT N+ G +
Sbjct: 90 NRRCFIALGLDEEQTDFVYGSDFQ-LGAEYMLNVLKLSRAVTLNRAKRSMDEVGRAMDDP 148
Query: 202 HIGKVSFPPVQAV 214
+ ++ +P +QA+
Sbjct: 149 TVSQMVYPLMQAI 161
>sp|Q8DS44|SYY_STRMU Tyrosine--tRNA ligase OS=Streptococcus mutans serotype c (strain
ATCC 700610 / UA159) GN=tyrS PE=3 SV=2
Length = 418
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 64/138 (46%), Gaps = 13/138 (9%)
Query: 64 RGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVI 123
RG+ F D + + + G+ + YTG P++++LHLGHLVP + ++LQ A P +
Sbjct: 10 RGLVFQTTDEEALKKSLDDGQVSF-YTGYDPTADSLHLGHLVPILVMRHLQLAGHKPYAL 68
Query: 124 -----------QLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVG 172
DDE+ + +V+ + R + I K + +++D++G
Sbjct: 69 VGGATGLIGDPSFKDDERSLQTKETVKNWVQSIRSQLERFIDFKHGDNKAQMVNNYDWMG 128
Query: 173 GAFYKNMVK-VAKCVTYN 189
+ + ++ V K T N
Sbjct: 129 KITFIDFLRDVGKYFTVN 146
>sp|Q4L774|SYY_STAHJ Tyrosine--tRNA ligase OS=Staphylococcus haemolyticus (strain
JCSC1435) GN=tyrS PE=3 SV=1
Length = 420
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 64 RGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVI 123
RG+ + D + I + K E+ LY G P++++LH+GHL+PFM + Q+ P+V+
Sbjct: 12 RGLIYQQTDESSIEELLNK-EQISLYCGADPTADSLHIGHLLPFMTLRRFQEHGHRPIVL 70
>sp|Q1GBW9|SYY_LACDA Tyrosine--tRNA ligase OS=Lactobacillus delbrueckii subsp.
bulgaricus (strain ATCC 11842 / DSM 20081) GN=tyrS PE=3
SV=1
Length = 421
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 31/60 (51%)
Query: 64 RGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVI 123
RG D + D K + LY G P+ ++LH+GHL+PFM K Q A P+++
Sbjct: 13 RGAINQETDEEGLRDYLAKHDDLALYCGTDPTGDSLHIGHLIPFMILKRFQLAGYKPVIV 72
>sp|Q04CC7|SYY_LACDB Tyrosine--tRNA ligase OS=Lactobacillus delbrueckii subsp.
bulgaricus (strain ATCC BAA-365) GN=tyrS PE=3 SV=1
Length = 421
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 31/60 (51%)
Query: 64 RGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVI 123
RG D + D K + LY G P+ ++LH+GHL+PFM K Q A P+++
Sbjct: 13 RGAINQETDEEGLRDYLAKHDDLALYCGTDPTGDSLHIGHLIPFMILKRFQLAGYKPVIV 72
>sp|Q8PVK0|SYY_METMA Tyrosine--tRNA ligase OS=Methanosarcina mazei (strain ATCC BAA-159
/ DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) GN=tyrS
PE=3 SV=1
Length = 317
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 71/133 (53%), Gaps = 11/133 (8%)
Query: 89 YTGRGPSSEALHLGHLVPFMFTKYLQDA-FKVPLVIQLTDDEKCMWKNLSVEESQRLARE 147
Y G PS + +H+GH++ LQ A FK+ ++ L D + + ++EE +++A
Sbjct: 33 YVGYEPSGK-IHMGHVLTVNKLIDLQKAGFKITVL--LADVHAYLNRKGTLEEVRKIADY 89
Query: 148 NAKDIIACGFDVTKT-FIF-SDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTG----ED 201
N + IA G D +T F++ SDF +G + N++K+++ VT N+ G +
Sbjct: 90 NRRCFIALGLDEEQTDFVYGSDFQ-LGAEYMLNVLKLSRAVTLNRAKRSMDEVGRAMDDP 148
Query: 202 HIGKVSFPPVQAV 214
+ ++ +P +QA+
Sbjct: 149 TVSQMVYPLMQAI 161
>sp|Q7A0M7|SYY_STAAW Tyrosine--tRNA ligase OS=Staphylococcus aureus (strain MW2) GN=tyrS
PE=3 SV=1
Length = 420
Score = 45.1 bits (105), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 64 RGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVI 123
RG+ + D I D K E+ LY G P++++LH+GHL+PF+ + Q+ P+V+
Sbjct: 12 RGLIYQQTDEQGIEDLLNK-EQVTLYCGADPTADSLHIGHLLPFLTLRRFQEHGHRPIVL 70
>sp|A8Z2P6|SYY_STAAT Tyrosine--tRNA ligase OS=Staphylococcus aureus (strain USA300 /
TCH1516) GN=tyrS PE=3 SV=1
Length = 420
Score = 45.1 bits (105), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 64 RGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVI 123
RG+ + D I D K E+ LY G P++++LH+GHL+PF+ + Q+ P+V+
Sbjct: 12 RGLIYQQTDEQGIEDLLNK-EQVTLYCGADPTADSLHIGHLLPFLTLRRFQEHGHRPIVL 70
>sp|Q6G8J9|SYY_STAAS Tyrosine--tRNA ligase OS=Staphylococcus aureus (strain MSSA476)
GN=tyrS PE=3 SV=1
Length = 420
Score = 45.1 bits (105), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 64 RGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVI 123
RG+ + D I D K E+ LY G P++++LH+GHL+PF+ + Q+ P+V+
Sbjct: 12 RGLIYQQTDEQGIEDLLNK-EQVTLYCGADPTADSLHIGHLLPFLTLRRFQEHGHRPIVL 70
>sp|Q6GFX9|SYY_STAAR Tyrosine--tRNA ligase OS=Staphylococcus aureus (strain MRSA252)
GN=tyrS PE=3 SV=1
Length = 420
Score = 45.1 bits (105), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 64 RGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVI 123
RG+ + D I D K E+ LY G P++++LH+GHL+PF+ + Q+ P+V+
Sbjct: 12 RGLIYQQTDEQGIEDLLNK-EQVTLYCGADPTADSLHIGHLLPFLTLRRFQEHGHRPIVL 70
>sp|Q7A537|SYY_STAAN Tyrosine--tRNA ligase OS=Staphylococcus aureus (strain N315)
GN=tyrS PE=1 SV=1
Length = 420
Score = 45.1 bits (105), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 64 RGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVI 123
RG+ + D I D K E+ LY G P++++LH+GHL+PF+ + Q+ P+V+
Sbjct: 12 RGLIYQQTDEQGIEDLLNK-EQVTLYCGADPTADSLHIGHLLPFLTLRRFQEHGHRPIVL 70
>sp|Q99TD5|SYY_STAAM Tyrosine--tRNA ligase OS=Staphylococcus aureus (strain Mu50 / ATCC
700699) GN=tyrS PE=1 SV=1
Length = 420
Score = 45.1 bits (105), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 64 RGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVI 123
RG+ + D I D K E+ LY G P++++LH+GHL+PF+ + Q+ P+V+
Sbjct: 12 RGLIYQQTDEQGIEDLLNK-EQVTLYCGADPTADSLHIGHLLPFLTLRRFQEHGHRPIVL 70
>sp|A6QHR2|SYY_STAAE Tyrosine--tRNA ligase OS=Staphylococcus aureus (strain Newman)
GN=tyrS PE=1 SV=1
Length = 420
Score = 45.1 bits (105), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 64 RGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVI 123
RG+ + D I D K E+ LY G P++++LH+GHL+PF+ + Q+ P+V+
Sbjct: 12 RGLIYQQTDEQGIEDLLNK-EQVTLYCGADPTADSLHIGHLLPFLTLRRFQEHGHRPIVL 70
>sp|Q2YTG1|SYY_STAAB Tyrosine--tRNA ligase OS=Staphylococcus aureus (strain bovine RF122
/ ET3-1) GN=tyrS PE=3 SV=1
Length = 420
Score = 45.1 bits (105), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 64 RGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVI 123
RG+ + D I D K E+ LY G P++++LH+GHL+PF+ + Q+ P+V+
Sbjct: 12 RGLIYQQTDEQGIEDLLNK-EQVTLYCGADPTADSLHIGHLLPFLTLRRFQEHGHRPIVL 70
>sp|A5ITQ1|SYY_STAA9 Tyrosine--tRNA ligase OS=Staphylococcus aureus (strain JH9) GN=tyrS
PE=3 SV=1
Length = 420
Score = 45.1 bits (105), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 64 RGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVI 123
RG+ + D I D K E+ LY G P++++LH+GHL+PF+ + Q+ P+V+
Sbjct: 12 RGLIYQQTDEQGIEDLLNK-EQVTLYCGADPTADSLHIGHLLPFLTLRRFQEHGHRPIVL 70
>sp|Q2FXJ5|SYY_STAA8 Tyrosine--tRNA ligase OS=Staphylococcus aureus (strain NCTC 8325)
GN=tyrS PE=3 SV=1
Length = 420
Score = 45.1 bits (105), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 64 RGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVI 123
RG+ + D I D K E+ LY G P++++LH+GHL+PF+ + Q+ P+V+
Sbjct: 12 RGLIYQQTDEQGIEDLLNK-EQVTLYCGADPTADSLHIGHLLPFLTLRRFQEHGHRPIVL 70
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.141 0.435
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 99,381,002
Number of Sequences: 539616
Number of extensions: 4288236
Number of successful extensions: 12469
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 299
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 12086
Number of HSP's gapped (non-prelim): 339
length of query: 249
length of database: 191,569,459
effective HSP length: 115
effective length of query: 134
effective length of database: 129,513,619
effective search space: 17354824946
effective search space used: 17354824946
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 60 (27.7 bits)