Query 025688
Match_columns 249
No_of_seqs 243 out of 1738
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 08:27:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025688.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025688hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2145 Cytoplasmic tryptophan 100.0 3.3E-83 7.1E-88 570.5 15.3 242 6-249 4-248 (397)
2 PLN02486 aminoacyl-tRNA ligase 100.0 5.2E-74 1.1E-78 537.9 18.0 232 15-248 1-234 (383)
3 PRK12285 tryptophanyl-tRNA syn 100.0 1.4E-64 3E-69 472.8 17.0 217 13-248 2-218 (368)
4 COG0180 TrpS Tryptophanyl-tRNA 100.0 4.8E-40 1E-44 300.1 12.8 148 83-244 3-158 (314)
5 PRK05912 tyrosyl-tRNA syntheta 100.0 7.5E-39 1.6E-43 303.4 11.6 178 58-244 7-201 (408)
6 PRK13354 tyrosyl-tRNA syntheta 100.0 2.1E-38 4.6E-43 300.3 13.4 178 59-244 7-199 (410)
7 PRK08560 tyrosyl-tRNA syntheta 100.0 5.9E-38 1.3E-42 289.9 12.7 171 60-244 6-181 (329)
8 cd00806 TrpRS_core catalytic c 100.0 1.5E-37 3.3E-42 281.5 11.1 143 87-244 1-150 (280)
9 TIGR00234 tyrS tyrosyl-tRNA sy 100.0 3.4E-37 7.3E-42 289.5 11.9 172 58-244 5-190 (377)
10 TIGR00233 trpS tryptophanyl-tR 100.0 6.7E-37 1.4E-41 282.8 11.7 146 84-244 1-152 (328)
11 cd00395 Tyr_Trp_RS_core cataly 100.0 4.5E-37 9.7E-42 277.5 7.9 150 87-244 1-166 (273)
12 cd00805 TyrRS_core catalytic c 100.0 2E-36 4.3E-41 272.7 7.9 146 87-244 2-164 (269)
13 PRK12556 tryptophanyl-tRNA syn 100.0 2.9E-35 6.4E-40 272.2 11.3 144 86-244 4-162 (332)
14 PRK12282 tryptophanyl-tRNA syn 100.0 1.1E-34 2.3E-39 268.6 11.4 143 86-244 3-155 (333)
15 PRK00927 tryptophanyl-tRNA syn 100.0 9.4E-35 2E-39 269.0 10.1 141 87-244 3-151 (333)
16 PTZ00126 tyrosyl-tRNA syntheta 100.0 3.1E-34 6.7E-39 269.6 13.3 170 60-243 42-222 (383)
17 PRK12283 tryptophanyl-tRNA syn 100.0 6.3E-34 1.4E-38 267.0 11.8 143 87-244 4-155 (398)
18 PLN02886 aminoacyl-tRNA ligase 100.0 3E-33 6.5E-38 262.4 11.2 142 86-244 47-197 (389)
19 PRK12284 tryptophanyl-tRNA syn 100.0 7.7E-33 1.7E-37 261.7 9.8 145 85-244 2-161 (431)
20 COG0162 TyrS Tyrosyl-tRNA synt 100.0 2.8E-32 6E-37 256.8 12.5 155 59-218 7-178 (401)
21 PF00579 tRNA-synt_1b: tRNA sy 100.0 3.4E-33 7.4E-38 253.4 4.6 149 82-243 2-161 (292)
22 PTZ00348 tyrosyl-tRNA syntheta 100.0 1.2E-31 2.7E-36 266.2 13.3 171 60-244 8-188 (682)
23 KOG2713 Mitochondrial tryptoph 100.0 3.3E-29 7.1E-34 223.7 8.8 145 85-244 13-168 (347)
24 KOG2623 Tyrosyl-tRNA synthetas 99.9 4.7E-28 1E-32 223.8 6.9 176 58-242 33-238 (467)
25 PTZ00348 tyrosyl-tRNA syntheta 99.6 5.3E-15 1.2E-19 147.8 8.5 117 112-241 401-522 (682)
26 KOG2144 Tyrosyl-tRNA synthetas 99.5 8.2E-14 1.8E-18 125.5 6.6 155 60-218 11-175 (360)
27 cd00808 GluRS_core catalytic c 98.2 5E-06 1.1E-10 74.3 7.8 114 93-244 9-131 (239)
28 cd00802 class_I_aaRS_core cata 98.1 3.7E-06 8.1E-11 68.4 5.3 41 88-129 2-46 (143)
29 cd00674 LysRS_core_class_I cat 97.1 0.0053 1.1E-07 57.9 11.1 109 83-195 18-156 (353)
30 PRK00750 lysK lysyl-tRNA synth 97.0 0.0059 1.3E-07 60.2 10.5 116 76-195 15-162 (510)
31 TIGR00467 lysS_arch lysyl-tRNA 96.7 0.007 1.5E-07 59.8 8.4 108 84-195 18-155 (515)
32 COG1384 LysS Lysyl-tRNA synthe 95.6 0.091 2E-06 51.7 9.8 107 84-194 19-157 (521)
33 PRK05710 glutamyl-Q tRNA(Asp) 95.3 0.069 1.5E-06 49.4 7.5 70 93-171 13-82 (299)
34 cd00418 GlxRS_core catalytic c 95.2 0.083 1.8E-06 47.1 7.8 70 93-171 9-78 (230)
35 cd09287 GluRS_non_core catalyt 95.2 0.065 1.4E-06 48.0 7.0 77 87-171 3-79 (240)
36 PRK04156 gltX glutamyl-tRNA sy 95.0 0.086 1.9E-06 52.7 8.0 89 83-180 99-187 (567)
37 PF01921 tRNA-synt_1f: tRNA sy 94.9 0.019 4.2E-07 54.2 2.8 109 83-195 22-161 (360)
38 cd00807 GlnRS_core catalytic c 94.9 0.079 1.7E-06 47.4 6.6 69 93-171 9-77 (238)
39 PRK14895 gltX glutamyl-tRNA sy 94.3 0.17 3.7E-06 50.1 8.0 75 88-171 5-81 (513)
40 PRK00260 cysS cysteinyl-tRNA s 93.9 0.22 4.8E-06 48.5 7.8 73 84-158 22-107 (463)
41 TIGR03838 queuosine_YadB gluta 93.8 0.26 5.5E-06 45.0 7.6 71 93-172 8-78 (272)
42 TIGR00463 gltX_arch glutamyl-t 93.6 0.21 4.5E-06 50.0 7.2 145 10-180 31-177 (560)
43 cd02156 nt_trans nucleotidyl t 93.5 0.24 5.3E-06 38.0 6.0 63 89-158 3-65 (105)
44 PTZ00402 glutamyl-tRNA synthet 93.4 0.24 5.3E-06 49.8 7.2 86 86-181 53-138 (601)
45 PLN03233 putative glutamate-tR 93.4 0.22 4.8E-06 49.3 6.8 77 93-180 19-95 (523)
46 PRK00133 metG methionyl-tRNA s 93.2 0.23 5.1E-06 50.5 7.0 76 84-160 2-89 (673)
47 PLN02224 methionine-tRNA ligas 93.0 0.23 4.9E-06 50.3 6.5 94 63-160 51-156 (616)
48 PTZ00437 glutaminyl-tRNA synth 92.9 0.23 4.9E-06 49.7 6.2 88 83-181 49-136 (574)
49 PF00749 tRNA-synt_1c: tRNA sy 92.7 0.26 5.6E-06 45.7 5.9 70 93-171 9-78 (314)
50 PRK05347 glutaminyl-tRNA synth 92.7 0.7 1.5E-05 46.2 9.2 96 76-181 18-115 (554)
51 TIGR00440 glnS glutaminyl-tRNA 92.6 0.43 9.3E-06 47.4 7.6 78 93-180 8-85 (522)
52 PLN02859 glutamine-tRNA ligase 92.5 0.71 1.5E-05 47.9 9.2 101 70-181 248-349 (788)
53 PRK12410 glutamylglutaminyl-tR 92.5 0.37 8.1E-06 46.7 6.9 69 93-171 7-75 (433)
54 PLN02907 glutamate-tRNA ligase 92.3 0.4 8.7E-06 49.4 7.2 80 91-181 219-298 (722)
55 COG0008 GlnS Glutamyl- and glu 92.2 0.45 9.7E-06 46.7 7.1 77 93-179 17-93 (472)
56 PRK12268 methionyl-tRNA synthe 91.7 0.43 9.4E-06 47.2 6.6 75 84-160 3-91 (556)
57 cd00672 CysRS_core catalytic c 91.6 1.3 2.9E-05 38.7 8.8 76 83-159 19-105 (213)
58 PRK14703 glutaminyl-tRNA synth 91.2 0.57 1.2E-05 48.6 7.0 95 76-180 20-116 (771)
59 PF01406 tRNA-synt_1e: tRNA sy 91.1 0.84 1.8E-05 42.3 7.3 87 83-171 6-104 (300)
60 TIGR00464 gltX_bact glutamyl-t 91.1 0.78 1.7E-05 44.9 7.5 70 93-171 9-78 (470)
61 PRK00390 leuS leucyl-tRNA synt 90.5 0.8 1.7E-05 47.7 7.4 76 83-160 31-119 (805)
62 PF09334 tRNA-synt_1g: tRNA sy 90.4 0.54 1.2E-05 44.9 5.7 66 94-160 10-86 (391)
63 cd00814 MetRS_core catalytic c 88.6 1 2.2E-05 41.5 5.9 66 94-160 11-87 (319)
64 PRK11893 methionyl-tRNA synthe 88.6 1.4 3E-05 43.0 7.0 75 85-160 2-88 (511)
65 COG0143 MetG Methionyl-tRNA sy 88.1 1.3 2.8E-05 44.4 6.6 74 84-158 5-90 (558)
66 TIGR00398 metG methionyl-tRNA 87.9 1.8 3.8E-05 42.7 7.4 67 93-160 9-86 (530)
67 PLN02627 glutamyl-tRNA synthet 87.4 1.8 3.9E-05 43.1 7.1 79 84-171 44-130 (535)
68 TIGR00435 cysS cysteinyl-tRNA 87.3 2.1 4.6E-05 41.8 7.5 77 83-160 20-107 (465)
69 PRK01406 gltX glutamyl-tRNA sy 87.1 1.9 4.2E-05 42.3 7.1 72 92-171 11-88 (476)
70 PRK12267 methionyl-tRNA synthe 86.8 1.5 3.3E-05 44.4 6.3 76 84-160 4-91 (648)
71 PRK12558 glutamyl-tRNA synthet 86.5 1.5 3.3E-05 42.8 5.9 69 93-171 10-78 (445)
72 cd00668 Ile_Leu_Val_MetRS_core 86.5 2.1 4.6E-05 39.1 6.6 43 86-129 2-49 (312)
73 PF06543 Lac_bphage_repr: Lact 84.3 0.81 1.8E-05 30.9 2.0 31 26-57 16-46 (49)
74 KOG1147 Glutamyl-tRNA syntheta 83.9 2.6 5.5E-05 42.2 6.1 75 87-171 202-276 (712)
75 PRK14536 cysS cysteinyl-tRNA s 83.8 5.1 0.00011 39.6 8.2 76 84-160 22-119 (490)
76 cd00818 IleRS_core catalytic c 83.6 2 4.3E-05 40.0 5.1 44 85-129 2-50 (338)
77 cd00671 ArgRS_core catalytic c 83.2 3.5 7.5E-05 35.7 6.1 70 89-159 6-85 (212)
78 cd02168 NMNAT_Nudix Nicotinami 81.9 6.3 0.00014 33.6 7.1 74 87-170 2-77 (181)
79 TIGR00396 leuS_bact leucyl-tRN 81.2 5.9 0.00013 41.6 8.0 91 60-159 13-115 (842)
80 cd00812 LeuRS_core catalytic c 80.9 4 8.7E-05 37.5 6.0 72 87-159 3-86 (314)
81 PRK12418 cysteinyl-tRNA synthe 80.1 6.7 0.00014 37.6 7.3 72 85-157 9-92 (384)
82 PRK14534 cysS cysteinyl-tRNA s 79.7 7.6 0.00017 38.3 7.7 75 85-160 21-117 (481)
83 PRK05379 bifunctional nicotina 79.5 7.1 0.00015 36.5 7.2 71 84-166 6-78 (340)
84 TIGR03447 mycothiol_MshC cyste 79.3 7.9 0.00017 37.4 7.6 73 85-158 36-120 (411)
85 PRK01611 argS arginyl-tRNA syn 76.6 4.5 9.7E-05 39.8 5.2 76 84-160 111-198 (507)
86 PF00133 tRNA-synt_1: tRNA syn 75.0 12 0.00026 37.7 7.8 43 81-124 20-66 (601)
87 PLN02610 probable methionyl-tR 74.0 6.9 0.00015 40.9 6.0 76 84-160 17-105 (801)
88 KOG1148 Glutaminyl-tRNA synthe 72.5 11 0.00024 38.2 6.6 99 87-199 248-358 (764)
89 KOG0435 Leucyl-tRNA synthetase 72.4 4 8.7E-05 41.9 3.7 60 58-126 39-102 (876)
90 cd00817 ValRS_core catalytic c 71.6 15 0.00032 34.9 7.2 44 85-129 2-50 (382)
91 PLN02946 cysteine-tRNA ligase 71.5 20 0.00043 36.1 8.3 74 84-158 79-164 (557)
92 PTZ00399 cysteinyl-tRNA-synthe 70.7 15 0.00032 37.6 7.4 76 83-159 58-147 (651)
93 PRK14535 cysS cysteinyl-tRNA s 68.9 22 0.00048 36.7 8.1 77 83-160 246-334 (699)
94 PRK13793 nicotinamide-nucleoti 66.3 34 0.00074 29.8 7.7 74 85-170 5-80 (196)
95 COG0215 CysS Cysteinyl-tRNA sy 65.1 18 0.00039 35.6 6.3 72 86-158 23-106 (464)
96 cd02166 NMNAT_Archaea Nicotina 64.7 54 0.0012 27.2 8.5 72 88-170 3-77 (163)
97 PLN02563 aminoacyl-tRNA ligase 63.4 25 0.00054 37.7 7.6 46 83-129 109-159 (963)
98 PLN02943 aminoacyl-tRNA ligase 61.2 13 0.00027 39.8 4.9 62 59-129 71-136 (958)
99 PRK13208 valS valyl-tRNA synth 58.4 10 0.00022 39.4 3.7 62 59-129 21-86 (800)
100 PF06574 FAD_syn: FAD syntheta 58.2 14 0.00031 30.7 3.8 44 83-129 4-47 (157)
101 KOG2007 Cysteinyl-tRNA synthet 58.1 44 0.00096 33.4 7.6 73 83-156 53-143 (586)
102 TIGR00422 valS valyl-tRNA synt 58.1 15 0.00033 38.5 4.9 62 59-129 16-81 (861)
103 COG0525 ValS Valyl-tRNA synthe 57.1 8.5 0.00018 40.6 2.8 36 94-130 44-82 (877)
104 TIGR02199 rfaE_dom_II rfaE bif 56.0 64 0.0014 26.2 7.3 42 83-130 10-51 (144)
105 TIGR00456 argS arginyl-tRNA sy 54.9 15 0.00033 36.7 4.1 42 87-129 116-162 (566)
106 PF00750 tRNA-synt_1d: tRNA sy 53.2 15 0.00032 34.5 3.5 39 89-129 26-70 (354)
107 COG0018 ArgS Arginyl-tRNA synt 53.2 14 0.0003 37.3 3.5 41 89-130 123-168 (577)
108 PLN02843 isoleucyl-tRNA synthe 52.9 41 0.00088 36.1 7.1 57 60-124 15-75 (974)
109 PRK05743 ileS isoleucyl-tRNA s 48.2 48 0.001 35.2 6.7 63 60-129 31-97 (912)
110 COG0196 RibF FAD synthase [Coe 47.8 36 0.00079 31.6 5.1 67 85-158 16-87 (304)
111 PRK00168 coaD phosphopantethei 46.9 63 0.0014 26.6 6.0 48 86-142 3-51 (159)
112 PRK12451 arginyl-tRNA syntheta 46.4 21 0.00046 35.7 3.6 41 89-130 119-164 (562)
113 COG0495 LeuS Leucyl-tRNA synth 46.2 14 0.00029 38.9 2.2 41 84-125 34-78 (814)
114 PRK14900 valS valyl-tRNA synth 45.9 21 0.00046 38.5 3.7 63 59-129 30-96 (1052)
115 PLN02381 valyl-tRNA synthetase 45.7 25 0.00053 38.1 4.1 62 59-129 111-176 (1066)
116 PLN02660 pantoate--beta-alanin 44.6 22 0.00047 32.8 3.1 24 90-113 23-46 (284)
117 PTZ00419 valyl-tRNA synthetase 42.0 30 0.00064 37.1 4.0 66 59-129 39-108 (995)
118 COG2521 Predicted archaeal met 42.0 13 0.00029 33.7 1.2 91 15-117 173-269 (287)
119 TIGR00124 cit_ly_ligase [citra 41.7 22 0.00047 33.4 2.6 65 29-110 94-162 (332)
120 PRK01153 nicotinamide-nucleoti 41.1 1.6E+02 0.0036 24.7 7.7 69 87-166 3-74 (174)
121 PRK05729 valS valyl-tRNA synth 41.0 27 0.00059 36.8 3.6 61 59-129 20-84 (874)
122 cd02064 FAD_synthetase_N FAD s 40.7 32 0.00069 28.9 3.3 33 97-129 9-41 (180)
123 COG0414 PanC Panthothenate syn 40.4 30 0.00064 31.9 3.2 22 90-111 24-45 (285)
124 PLN02286 arginine-tRNA ligase 38.5 35 0.00076 34.3 3.7 41 89-130 123-168 (576)
125 TIGR00683 nanA N-acetylneurami 38.3 3E+02 0.0066 24.9 12.4 133 16-187 8-157 (290)
126 TIGR00392 ileS isoleucyl-tRNA 37.3 35 0.00077 35.8 3.7 60 60-126 18-81 (861)
127 KOG2804 Phosphorylcholine tran 36.6 35 0.00076 31.9 3.1 40 83-129 61-101 (348)
128 PRK15458 tagatose 6-phosphate 35.8 59 0.0013 31.7 4.6 64 86-158 56-122 (426)
129 COG1056 NadR Nicotinamide mono 35.7 1.6E+02 0.0035 25.1 6.8 76 83-170 2-80 (172)
130 cd02173 ECT CTP:phosphoethanol 35.6 1.2E+02 0.0026 25.0 5.9 39 84-129 2-40 (152)
131 KOG0432 Valyl-tRNA synthetase 35.3 31 0.00068 36.5 2.8 34 95-130 87-124 (995)
132 PRK05627 bifunctional riboflav 35.1 44 0.00096 30.9 3.6 41 86-129 15-55 (305)
133 TIGR02810 agaZ_gatZ D-tagatose 35.1 66 0.0014 31.3 4.8 64 86-158 52-118 (420)
134 TIGR00125 cyt_tran_rel cytidyl 34.6 54 0.0012 22.1 3.2 27 97-127 9-35 (66)
135 KOG2047 mRNA splicing factor [ 33.3 39 0.00083 34.9 3.0 42 26-72 228-269 (835)
136 KOG1149 Glutamyl-tRNA syntheta 32.5 1E+02 0.0023 30.4 5.7 43 86-129 34-76 (524)
137 TIGR01527 arch_NMN_Atrans nico 32.1 1.3E+02 0.0028 25.3 5.6 48 88-142 3-52 (165)
138 PRK15052 D-tagatose-1,6-bispho 32.1 80 0.0017 30.7 4.8 64 86-158 53-119 (421)
139 cd00560 PanC Pantoate-beta-ala 31.7 50 0.0011 30.2 3.3 23 90-112 24-46 (277)
140 cd02167 NMNAT_NadR Nicotinamid 31.2 97 0.0021 25.6 4.7 52 87-145 2-55 (158)
141 PF13480 Acetyltransf_6: Acety 31.0 61 0.0013 24.6 3.3 33 85-117 95-127 (142)
142 TIGR00395 leuS_arch leucyl-tRN 30.4 46 0.00099 35.5 3.2 55 60-124 10-68 (938)
143 COG5309 Exo-beta-1,3-glucanase 30.3 4.5E+02 0.0098 24.4 9.6 115 38-158 57-171 (305)
144 TIGR00018 panC pantoate--beta- 29.7 63 0.0014 29.7 3.6 24 90-113 24-47 (282)
145 PRK06039 ileS isoleucyl-tRNA s 29.2 55 0.0012 35.1 3.5 61 59-126 22-86 (975)
146 PF08013 Tagatose_6_P_K: Tagat 28.9 24 0.00051 34.3 0.7 63 86-158 56-122 (424)
147 PF03568 Peptidase_C50: Peptid 28.6 96 0.0021 29.4 4.8 60 63-132 289-348 (383)
148 TIGR01510 coaD_prev_kdtB pante 28.5 1.9E+02 0.0042 23.5 6.0 36 88-130 3-39 (155)
149 KOG3062 RNA polymerase II elon 28.0 3.1E+02 0.0067 25.0 7.5 91 85-180 2-94 (281)
150 PRK13964 coaD phosphopantethei 27.9 1.5E+02 0.0032 24.3 5.2 48 86-142 3-51 (140)
151 cd02163 PPAT Phosphopantethein 27.9 1.7E+02 0.0038 23.8 5.7 30 97-130 9-39 (153)
152 cd02164 PPAT_CoAS phosphopante 27.8 1.8E+02 0.0039 23.7 5.7 30 97-129 9-38 (143)
153 PRK00777 phosphopantetheine ad 27.5 1.4E+02 0.0031 24.6 5.1 29 97-129 11-39 (153)
154 cd02172 RfaE_N N-terminal doma 26.2 1.9E+02 0.004 23.4 5.5 28 83-113 3-30 (144)
155 cd02039 cytidylyltransferase_l 26.1 2.5E+02 0.0055 21.4 6.2 30 97-129 9-38 (143)
156 PF00701 DHDPS: Dihydrodipicol 25.7 4.8E+02 0.01 23.2 10.0 87 83-186 68-155 (289)
157 PLN02959 aminoacyl-tRNA ligase 24.8 66 0.0014 35.0 3.2 58 60-123 25-87 (1084)
158 PTZ00427 isoleucine-tRNA ligas 24.4 87 0.0019 34.6 4.0 63 59-128 83-149 (1205)
159 cd01444 GlpE_ST GlpE sulfurtra 24.1 1.7E+02 0.0037 20.8 4.6 42 80-131 53-94 (96)
160 PF00532 Peripla_BP_1: Peripla 23.9 5.1E+02 0.011 22.9 8.8 95 64-167 58-160 (279)
161 PRK00071 nadD nicotinic acid m 23.5 2.7E+02 0.0058 23.6 6.2 26 83-111 3-28 (203)
162 PRK00380 panC pantoate--beta-a 23.5 84 0.0018 28.8 3.2 35 90-129 24-58 (281)
163 PF01467 CTP_transf_2: Cytidyl 22.9 1.4E+02 0.003 23.1 4.0 43 97-142 7-52 (157)
164 PLN02406 ethanolamine-phosphat 22.9 2.2E+02 0.0047 27.8 6.0 44 78-129 46-91 (418)
165 PRK13670 hypothetical protein; 22.7 1.5E+02 0.0032 28.4 4.9 26 98-124 12-37 (388)
166 PF14261 DUF4351: Domain of un 21.9 85 0.0019 21.8 2.3 30 32-63 15-44 (59)
167 PF14117 DUF4287: Domain of un 21.7 77 0.0017 22.4 2.0 18 46-63 5-22 (61)
168 PRK13804 ileS isoleucyl-tRNA s 21.3 1E+02 0.0022 33.1 3.8 60 60-126 36-99 (961)
169 PRK01170 phosphopantetheine ad 21.3 2.3E+02 0.005 26.6 5.7 50 96-153 9-61 (322)
170 PLN02417 dihydrodipicolinate s 21.0 6.1E+02 0.013 22.7 11.9 85 83-186 68-153 (280)
171 cd01528 RHOD_2 Member of the R 20.8 2.9E+02 0.0063 20.1 5.3 40 83-132 58-97 (101)
172 TIGR01518 g3p_cytidyltrns glyc 20.5 1.6E+02 0.0035 22.9 3.9 17 97-113 8-24 (125)
173 COG1703 ArgK Putative periplas 20.3 3.1E+02 0.0068 25.8 6.2 23 136-158 123-145 (323)
174 PRK13477 bifunctional pantoate 20.2 1.1E+02 0.0025 30.4 3.7 23 89-111 21-43 (512)
175 TIGR01526 nadR_NMN_Atrans nico 20.0 3.3E+02 0.0071 25.2 6.5 53 86-145 3-57 (325)
No 1
>KOG2145 consensus Cytoplasmic tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.3e-83 Score=570.51 Aligned_cols=242 Identities=64% Similarity=1.198 Sum_probs=234.4
Q ss_pred chhhhcccCcccccCCccC--CCcccHHHHHHHhCCCCCCHHHHHHHHHhcCCChhHHHhhccccccCChhHHHHHHHcC
Q 025688 6 EKQREEEREQVVSPWEVSS--SGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKG 83 (249)
Q Consensus 6 ~~~~~~~~~~~v~pw~v~~--~~~~dy~kl~~~fg~~~i~~~~~~r~~~~~~~~~~~l~~Rgi~~~~~d~~~ll~~~e~~ 83 (249)
+....+.+||+||||+|++ ..+|||||||.+|||++|++++++|+|++||+++|+|+|||+||+|||++.||+++|+|
T Consensus 4 ~~~~~~~~Eq~vtPW~V~~~~~~~IDYdklI~~FG~~k~deeli~R~ek~tg~~~h~flRrg~fFshRDf~~iLd~~eq~ 83 (397)
T KOG2145|consen 4 GEGATEVEEQRVTPWDVETSSADGIDYDKLIVQFGCSKIDEELIDRFEKLTGKPPHHFLRRGIFFSHRDFNLILDAYEQG 83 (397)
T ss_pred cccccchhhcccCcceeecccCCCccHHHHHHHhCcccCCHHHHHHHHHhcCCCchHHhhhcceeecccHHHHHHHHHcC
Confidence 3345677899999999987 57899999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEeccCCCCCCccchhhHHHHhHHHHHHcCCCcEEEEecChhhhhccCCCHHHHHHHHHHHHHHHHHcCCCCCceE
Q 025688 84 EKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTF 163 (249)
Q Consensus 84 k~~~iYtG~dPSg~sLHlGHlv~~~~l~~lQ~~g~~~v~i~IaD~~k~~~r~l~~e~i~~~~~eni~~iiA~G~dp~kt~ 163 (249)
+||++|||++||+++|||||++|+++++|||+++++|++|+++|+||++++.++.|++.++++||+++|+||||||++|+
T Consensus 84 kpFyLYTGRGpSS~smHlGHliPFiftKwlQe~F~vpLVIqlTDDEKflwK~l~~eda~~~arENaKDIia~GFDp~kTf 163 (397)
T KOG2145|consen 84 KPFYLYTGRGPSSESMHLGHLIPFIFTKWLQDVFDVPLVIQLTDDEKFLWKDLTLEDAKKYARENAKDIIAVGFDPKKTF 163 (397)
T ss_pred CceEEEeCCCCCccccccccchhHHHHHHHHHHhCCceEEEecccHHHHHhhCcHHHHHHHHHhcccceEEeccCCcceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCcCCCc-ccHHHHHHHhccCCHHHHHHhhCCCCCCceeeeechHHhhhccCCcCCCcccCCCCCCCCcccccCCCC
Q 025688 164 IFSDFDYVGG-AFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQV 242 (249)
Q Consensus 164 i~~ns~~~~~-~~~~~~l~l~k~~tv~~m~~~~gf~~~~~ig~~~YP~lQaaDil~~~fp~~~~~~~~~~~lVPvg~DQd 242 (249)
||+|.++++. .+|+++++++|++|.|+.+++|||++++++|++.||++|||++|++|||++|+++.+.||||||+||||
T Consensus 164 IFsn~~y~g~~~fy~nivki~k~vt~nqa~~iFGF~~sd~igk~~Fpa~qaap~fssSFp~if~~~~~~~CLiPcAiDQD 243 (397)
T KOG2145|consen 164 IFSNLDYMGGPAFYENIVKISKCVTLNQAKAIFGFTDSDCIGKIGFPAIQAAPSFSSSFPFIFGGRDDIPCLIPCAIDQD 243 (397)
T ss_pred EEechhhccCcHHHHHHHHHhheechhhheeeeccCCccccccccCchhhhcccccccchhhcCCCcCCceeceeeccCC
Confidence 9999999974 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccC
Q 025688 243 GSPFFLV 249 (249)
Q Consensus 243 p~~~~~~ 249 (249)
||||+
T Consensus 244 --PyFRm 248 (397)
T KOG2145|consen 244 --PYFRM 248 (397)
T ss_pred --hHHHh
Confidence 99995
No 2
>PLN02486 aminoacyl-tRNA ligase
Probab=100.00 E-value=5.2e-74 Score=537.90 Aligned_cols=232 Identities=87% Similarity=1.454 Sum_probs=221.6
Q ss_pred cccccCCccC--CCcccHHHHHHHhCCCCCCHHHHHHHHHhcCCChhHHHhhccccccCChhHHHHHHHcCCceEEEecc
Q 025688 15 QVVSPWEVSS--SGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGR 92 (249)
Q Consensus 15 ~~v~pw~v~~--~~~~dy~kl~~~fg~~~i~~~~~~r~~~~~~~~~~~l~~Rgi~~~~~d~~~ll~~~e~~k~~~iYtG~ 92 (249)
|.||||+|++ .+.|||+||+++|||++||+++++||+++||+++|+|+|||+||+|||++.+++++++|+++++||||
T Consensus 1 ~~v~pw~v~~~~~~~~dy~kl~~~fg~~~i~~~~~~r~~~~~~~~~h~~lrRgi~~~hrd~~~~l~~~e~~~~~~vYtG~ 80 (383)
T PLN02486 1 QVVTPWEVSAKDGGKIDYDKLVDKFGCQRLDPSLIDRVERLTGRPAHPFLRRGVFFAHRDLEEILDAYEKGEKFYLYTGR 80 (383)
T ss_pred CccCCccccCCCCCCcCHHHHHHHhCCCcCCHHHHHHHHHhcCCCCCcccccceeeeccCHHHHHHHHhcCCCeEEEeCC
Confidence 4699999994 24899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCccchhhHHHHhHHHHHHcCCCcEEEEecChhhhhccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEEcCcCCC
Q 025688 93 GPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVG 172 (249)
Q Consensus 93 dPSg~sLHlGHlv~~~~l~~lQ~~g~~~v~i~IaD~~k~~~r~l~~e~i~~~~~eni~~iiA~G~dp~kt~i~~ns~~~~ 172 (249)
+|||++|||||++++++++|||++||++++|+||||++++++.++.|++++++++|+++|+||||||+|++||+|++|..
T Consensus 81 ~PSg~~lHlGHlv~~~~~~~lQ~~~~~~~~I~iaD~e~~~~~~~~~e~i~~~~~en~~~iiA~G~dp~kt~I~s~~~~~~ 160 (383)
T PLN02486 81 GPSSEALHLGHLIPFMFTKYLQDAFKVPLVIQLTDDEKFLWKNLSVEESQRLARENAKDIIACGFDVERTFIFSDFDYVG 160 (383)
T ss_pred CCCCccccHHHHHHHHHHHHHHHhCCCeEEEEecCHHHHhhcCCCHHHHHHHHHHHHHHHHHhCCCCcceEEEeccHHHh
Confidence 99998899999999999999999999999999999999998889999999999999999999999999999999999986
Q ss_pred cccHHHHHHHhccCCHHHHHHhhCCCCCCceeeeechHHhhhccCCcCCCcccCCCCCCCCcccccCCCCCCCccc
Q 025688 173 GAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQVGSPFFL 248 (249)
Q Consensus 173 ~~~~~~~l~l~k~~tv~~m~~~~gf~~~~~ig~~~YP~lQaaDil~~~fp~~~~~~~~~~~lVPvg~DQdp~~~~~ 248 (249)
..+|.+++++++++|+++|++++||+++.|+|+++||++||||||+.+||++|+++++.+|+||||+||| |+|+
T Consensus 161 ~~~~~~~~~l~r~~t~~~~~~~~gf~~~~~ig~~~YP~lQaadi~~~~~~~l~~~~~~~~~lVPvG~DQd--~~~~ 234 (383)
T PLN02486 161 GAFYKNMVKIAKCVTLNQVRGIFGFSGEDNIGKISFPAVQAAPSFPSSFPHLFGGKDKLRCLIPCAIDQD--PYFR 234 (383)
T ss_pred HhHHHHHHHHHhhCcHHHHHHhhCcCCCCCchhhhhHHHHHhhhhhhccHHHhCCCcCCcceeecccchH--HHHH
Confidence 6799999999999999999999999889999999999999999999999999988777899999999999 6665
No 3
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.4e-64 Score=472.77 Aligned_cols=217 Identities=39% Similarity=0.668 Sum_probs=204.9
Q ss_pred cCcccccCCccCCCcccHHHHHHHhCCCCCCHHHHHHHHHhcCCChhHHHhhccccccCChhHHHHHHHcCCceEEEecc
Q 025688 13 REQVVSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGR 92 (249)
Q Consensus 13 ~~~~v~pw~v~~~~~~dy~kl~~~fg~~~i~~~~~~r~~~~~~~~~~~l~~Rgi~~~~~d~~~ll~~~e~~k~~~iYtG~ 92 (249)
.++.||||+|++ .+||+||+++|||++||+++++ |++ +|+|+|||+||+|||++.+++++++++++++|||+
T Consensus 2 ~~~~v~pw~~~~--~~dy~kl~~~fg~~~~~~~~~~-~~~-----~h~~~rR~~~~~hrd~d~il~~~~~~~~~~iytG~ 73 (368)
T PRK12285 2 DEFMVTPWEVSG--IVDYDKLFEEFGIEPFTEVLPE-LPE-----PHPLMRRGIIFGHRDYDKILEAYRNGKPFAVYTGF 73 (368)
T ss_pred CCceeCCCcCcC--cccHHHHHHHhCCCcCChHHHh-ccc-----cchHHhcCeeeecCCHHHHHHHHhcCCCeEEEEcc
Confidence 578999999999 8999999999999999999988 975 49999999999999999999999999999999999
Q ss_pred CCCCCCccchhhHHHHhHHHHHHcCCCcEEEEecChhhhhccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEEcCcCCC
Q 025688 93 GPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVG 172 (249)
Q Consensus 93 dPSg~sLHlGHlv~~~~l~~lQ~~g~~~v~i~IaD~~k~~~r~l~~e~i~~~~~eni~~iiA~G~dp~kt~i~~ns~~~~ 172 (249)
+||| +|||||++++++++|||++| ++++|+|||+||+++|.++++++++++++|+++|+|||+||+|+.||.||+|.
T Consensus 74 ~PSG-~lHLGh~~~~~~~~~lQ~~g-~~~~i~IaD~ha~~~~~~~~e~~~~~~~~~~~~~lA~G~Dp~k~~i~~qS~~~- 150 (368)
T PRK12285 74 MPSG-PMHIGHKMVFDELKWHQEFG-ANVYIPIADDEAYAARGLSWEETREWAYEYILDLIALGFDPDKTEIYFQSENI- 150 (368)
T ss_pred CCCC-CccHHHHHHHHHHHHHHhcC-CCEEEEecchHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccceEEEECCchH-
Confidence 9998 89999999999999999966 78999999999999877999999999999999999999999999999999996
Q ss_pred cccHHHHHHHhccCCHHHHHHhhCCCCCCceeeeechHHhhhccCCcCCCcccCCCCCCCCcccccCCCCCCCccc
Q 025688 173 GAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQVGSPFFL 248 (249)
Q Consensus 173 ~~~~~~~l~l~k~~tv~~m~~~~gf~~~~~ig~~~YP~lQaaDil~~~fp~~~~~~~~~~~lVPvg~DQdp~~~~~ 248 (249)
.+|++++.+++++|+++|++++||+++.|+|+++||+||||||| +|+++++. ++|+||||+||+ |+|+
T Consensus 151 -~~~~l~~~l~~~~t~~~l~r~~~f~~~~~~g~~~YP~lQaADil---~~~~~~~~--~~~lvPvG~DQ~--~h~~ 218 (368)
T PRK12285 151 -KVYDLAFELAKKVNFSELKAIYGFTGETNIGHIFYPATQAADIL---HPQLEEGP--KPTLVPVGIDQD--PHIR 218 (368)
T ss_pred -HHHHHHHHHHhhCcHHHHHHhhCCCCCCchhhhhhhHHHHHHHH---hhcccccC--CceEEEeccchH--HHHH
Confidence 59999999999999999999999999999999999999999999 69998644 799999999999 5554
No 4
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.8e-40 Score=300.08 Aligned_cols=148 Identities=22% Similarity=0.279 Sum_probs=135.5
Q ss_pred CCceEEEeccCCCCCCccchhhHHHHhHHHHHHcCCCcEEEEecChhhhhccCCCH-HHHHHHHHHHHHHHHHcCCCCCc
Q 025688 83 GEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSV-EESQRLARENAKDIIACGFDVTK 161 (249)
Q Consensus 83 ~k~~~iYtG~dPSg~sLHlGHlv~~~~l~~lQ~~g~~~v~i~IaD~~k~~~r~l~~-e~i~~~~~eni~~iiA~G~dp~k 161 (249)
++++++|||++||| .||||||+++++.+|.|+.+...++++|||+|++|.+.... +++++++++++++|+|||+||+|
T Consensus 3 ~~~~~vlSG~~PSG-~lHLGny~ga~~~~v~~q~~~~~~f~~IaDlha~t~~~~~~~~~l~~~~~e~~a~~LA~GiDP~k 81 (314)
T COG0180 3 MKKFRVLSGIQPSG-KLHLGNYLGAIRNWVLLQEEYYECFFFIADLHAITVRQDPTEEDLRQATREVAADYLAVGLDPEK 81 (314)
T ss_pred CCCceEEecCCCCC-CcchhHhHHHHHHHHHHhcccCceEEEEecHHHhhcCCCChHHHHHHHHHHHHHHHHHhccCccc
Confidence 56889999999999 79999999999988877777568999999999999876433 89999999999999999999999
Q ss_pred eEEEEcCcCCCcccHHHHHHHhccCCHHHHHHhhCCCCCCc-------eeeeechHHhhhccCCcCCCcccCCCCCCCCc
Q 025688 162 TFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDH-------IGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCL 234 (249)
Q Consensus 162 t~i~~ns~~~~~~~~~~~l~l~k~~tv~~m~~~~gf~~~~~-------ig~~~YP~lQaaDil~~~fp~~~~~~~~~~~l 234 (249)
++||.||++. .+++++|.+++.++++++++++||++..+ +|+++||++||||||+ | ++|+
T Consensus 82 ~~if~QS~v~--e~~eLa~~l~~~~~~gel~r~~~fKdk~~~~~~~~~~Gl~~YPvlqAADILl--~---------~a~~ 148 (314)
T COG0180 82 STIFLQSEVP--EHAELAWLLSCVTNFGELERMTQFKDKSAKKGESIPIGLLTYPVLQAADILL--Y---------QATL 148 (314)
T ss_pred cEEEEccCch--HHHHHHHHHHccCcHHHHHhhcCcchhhhcccccccccchhccHHHHHHhhh--c---------cCCe
Confidence 9999999985 59999999999999999999999987655 9999999999999998 3 6899
Q ss_pred ccccCCCCCC
Q 025688 235 IPCAIDQVGS 244 (249)
Q Consensus 235 VPvg~DQdp~ 244 (249)
||||+||+||
T Consensus 149 VPVG~DQ~qH 158 (314)
T COG0180 149 VPVGEDQDQH 158 (314)
T ss_pred eccCCCchHH
Confidence 9999999966
No 5
>PRK05912 tyrosyl-tRNA synthetase; Validated
Probab=100.00 E-value=7.5e-39 Score=303.38 Aligned_cols=178 Identities=24% Similarity=0.291 Sum_probs=150.1
Q ss_pred hhHHHhhccccccCChhHHHHHHHcCCceEEEeccCCCCCCccchhhHHHHhHHHHHHcCCCcEEEE------ecChh-h
Q 025688 58 PHVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQ------LTDDE-K 130 (249)
Q Consensus 58 ~~~l~~Rgi~~~~~d~~~ll~~~e~~k~~~iYtG~dPSg~sLHlGHlv~~~~l~~lQ~~g~~~v~i~------IaD~~-k 130 (249)
+..|.+||++++|+|+++++++++ ++++++|+||||||++|||||+++++.++|||++||.+++++ |+||+ +
T Consensus 7 l~~l~~Rg~~~~~~~~~~l~~~l~-~~~~~vy~G~dPTg~slHlGhlv~l~~l~~lQ~~G~~~~~ligd~ta~igDpsgk 85 (408)
T PRK05912 7 LEELKERGLIEQITDEEELEEKLA-KEPLRIYLGFDPTAPSLHLGHLVPLLKLRRFQDAGHKPIALIGGFTGMIGDPSGK 85 (408)
T ss_pred HHHHHhCCCeeecCCHHHHHHHhh-CCCCEEEEeecCCCCCccHHhHHHHHHHHHHHHCCCcEEEEEcCceeEcCCCCCC
Confidence 346688999999999999999998 789999999999998899999999999999999997655554 55666 4
Q ss_pred hhccC-CCHHHHHHHHHHHHHHHHHcCCCCCc--eEEEEcCcCCCcccHHHHHH-HhccCCHHHHHHhhCCC------CC
Q 025688 131 CMWKN-LSVEESQRLARENAKDIIACGFDVTK--TFIFSDFDYVGGAFYKNMVK-VAKCVTYNKVVGIFGFT------GE 200 (249)
Q Consensus 131 ~~~r~-l~~e~i~~~~~eni~~iiA~G~dp~k--t~i~~ns~~~~~~~~~~~l~-l~k~~tv~~m~~~~gf~------~~ 200 (249)
...|. ++.|++++|+ ++++.++++|+||++ +.|++||+|+++..+..+++ +++++|+++|+++.+++ ++
T Consensus 86 ~~~r~~l~~e~i~~n~-~~i~~ql~~~ld~~k~~~~i~~nsd~~~~~~~~~~l~~v~~~~~v~~m~~~~~~k~r~~~~~~ 164 (408)
T PRK05912 86 SETRKLLTREQVAENA-ETIKEQLFKFLDFEKDGAEIVNNSDWLGKLNAIDFLRDLGKHFTVNRMLERDDFKKRLREGQG 164 (408)
T ss_pred chhhccCCHHHHHHHH-HHHHHHHHHhcCcCcCcEEEEECCCcCCcccHHHHHHHHhhhccHHHHhhcchHHHHhccCCC
Confidence 43343 7999999888 456888899999998 99999999998888888898 99999999998765542 46
Q ss_pred CceeeeechHHhhhccCCcCCCcccCCCCCCCCcccccCCCCCC
Q 025688 201 DHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQVGS 244 (249)
Q Consensus 201 ~~ig~~~YP~lQaaDil~~~fp~~~~~~~~~~~lVPvg~DQdp~ 244 (249)
+|+|+|+||+|||||++. +++. ...+++|+|.||.||
T Consensus 165 is~~ef~Yp~LQa~D~l~-----l~~~--~~~~i~~gG~DQ~~n 201 (408)
T PRK05912 165 ISFTEFLYPLLQGYDFVA-----LNKR--YGCDLQLGGSDQWGN 201 (408)
T ss_pred CchhhhhhHHHHHhhHHH-----Hhcc--CCCCEEeccHHHHHH
Confidence 899999999999999885 2322 257788889999964
No 6
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=100.00 E-value=2.1e-38 Score=300.30 Aligned_cols=178 Identities=25% Similarity=0.309 Sum_probs=148.8
Q ss_pred hHHHhhccccccCChhHHHHHHHcCCceEEEeccCCCCCCccchhhHHHHhHHHHHHcCCCcEEEE------ecChh-hh
Q 025688 59 HVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQ------LTDDE-KC 131 (249)
Q Consensus 59 ~~l~~Rgi~~~~~d~~~ll~~~e~~k~~~iYtG~dPSg~sLHlGHlv~~~~l~~lQ~~g~~~v~i~------IaD~~-k~ 131 (249)
..|.+||++++|++++++.+++++++++++|+||||||++|||||++++++++|||++||.+++++ |+||+ |.
T Consensus 7 ~~l~~Rg~~~~~~~~~~l~~~~~~~~~~~iy~G~dPT~~sLHlGhlv~l~~l~~lq~~G~~~~~ligd~ta~igDpsgk~ 86 (410)
T PRK13354 7 EQLKWRGAINQETDEEKLRKSLKEGKPLTLYLGFDPTAPSLHIGHLVPLMKLKRFQDAGHRPVILIGGFTGKIGDPSGKS 86 (410)
T ss_pred HHHHHcCCchhcCCHHHHHHHHhcCCCcEEEEcccCCCCCcchhhHHHHHHHHHHHHcCCeEEEEEcccccccCCCCccc
Confidence 456789999999999999997788999999999999998999999999999999999998877776 77887 65
Q ss_pred hccC-CCHHHHHHHHHHHHHHHHHcCCCCCceEEEEcCcCCCcccHHHHHH-HhccCCHHHHHHhhCC------CCCCce
Q 025688 132 MWKN-LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVK-VAKCVTYNKVVGIFGF------TGEDHI 203 (249)
Q Consensus 132 ~~r~-l~~e~i~~~~~eni~~iiA~G~dp~kt~i~~ns~~~~~~~~~~~l~-l~k~~tv~~m~~~~gf------~~~~~i 203 (249)
..|+ ++.|++++|+....+. ++.|+||+++.|++||+|+++..|..+++ +++++|+|+|+++..+ ++++++
T Consensus 87 ~~R~~l~~e~i~~n~~~i~~q-~~~~ld~~k~~i~~ns~w~~~~~~~~~l~~v~~~~tv~~m~~~~~~~~R~~~~~~is~ 165 (410)
T PRK13354 87 KERKLLTDEQVQHNAKTYTEQ-IFKLFDFEKTEIVNNSDWLSKLNLIDFLRDYGKHFTVNRMLERDDVKSRLEREQGISF 165 (410)
T ss_pred ccccCCCHHHHHHHHHHHHHH-HHHhcCccceEEEECccccccccHHHHHHHHHhhccHHHHHhchHHHhhhccCCCCch
Confidence 5555 8999999777543333 44499999999999999998888899995 9999999999875332 345788
Q ss_pred eeeechHHhhhccCCcCCCcccCCCCCCCCcccccCCCCCC
Q 025688 204 GKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQVGS 244 (249)
Q Consensus 204 g~~~YP~lQaaDil~~~fp~~~~~~~~~~~lVPvg~DQdp~ 244 (249)
|+|+||+|||||++. ++... ..+++|+|.||.+|
T Consensus 166 ~ef~YpllQa~D~~~-----l~~~~--~~~iq~gG~DQ~~n 199 (410)
T PRK13354 166 TEFFYPLLQAYDFVH-----LNRKE--DVDLQIGGTDQWGN 199 (410)
T ss_pred hhhccHHHHhhhHHH-----HhccC--CCCEEEecHHHHHH
Confidence 999999999999885 34222 46677999999854
No 7
>PRK08560 tyrosyl-tRNA synthetase; Validated
Probab=100.00 E-value=5.9e-38 Score=289.93 Aligned_cols=171 Identities=23% Similarity=0.242 Sum_probs=152.1
Q ss_pred HHHhhccccccCChhHHHHHHHcCCceEEEeccCCCCCCccchhhHHHHhHHHHHHcCCCcEEEEecChhhhhccCCCHH
Q 025688 60 VFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVE 139 (249)
Q Consensus 60 ~l~~Rgi~~~~~d~~~ll~~~e~~k~~~iYtG~dPSg~sLHlGHlv~~~~l~~lQ~~g~~~v~i~IaD~~k~~~r~l~~e 139 (249)
.+++||..+.. ..++|.+++++++++++|+|++||| .|||||+++++.++|||++| .+++++|||+|+++.++.+++
T Consensus 6 ~~~~~~~~e~~-~~~el~~~l~~~~~~~v~~G~~PTG-~lHLG~~~~~~~~~~lq~~g-~~~~i~IaD~ha~~~~~~~~~ 82 (329)
T PRK08560 6 ELITRNTEEVV-TEEELRELLESKEEPKAYIGFEPSG-KIHLGHLLTMNKLADLQKAG-FKVTVLLADWHAYLNDKGDLE 82 (329)
T ss_pred HHHHhCceeec-CHHHHHHHHhCCCCCEEEEccCCCC-cchhhhhHHHHHHHHHHHCC-CeEEEEEccchhhcCCCCCHH
Confidence 56789977654 5688999998889999999999999 79999999999999999987 579999999999987668999
Q ss_pred HHHHHHHHHHHHHHHcCCCCCceEEEEcCcCCCc-ccHHHHHHHhccCCHHHHHHh---hCCC-CCCceeeeechHHhhh
Q 025688 140 ESQRLARENAKDIIACGFDVTKTFIFSDFDYVGG-AFYKNMVKVAKCVTYNKVVGI---FGFT-GEDHIGKVSFPPVQAV 214 (249)
Q Consensus 140 ~i~~~~~eni~~iiA~G~dp~kt~i~~ns~~~~~-~~~~~~l~l~k~~tv~~m~~~---~gf~-~~~~ig~~~YP~lQaa 214 (249)
+++++++++++.++|||+||+++.||.||+|..+ .+|.+++++++++|+++|++. .++. ++.|+|+|+||+||||
T Consensus 83 ~i~~~~~~~~~~~~A~G~dp~k~~i~~qS~~~~~~~~~~~~~~l~~~~~~~~l~r~~~~~~~~~~~~~~g~l~YP~lqaa 162 (329)
T PRK08560 83 EIRKVAEYNKKVFEALGLDPDKTEFVLGSEFQLDKEYWLLVLKLAKNTTLARARRSMTIMGRRMEEPDVSKLVYPLMQVA 162 (329)
T ss_pred HHHHHHHHHHHHHHHcCCChhheEEEecchhhccchHHHHHHHHHhhccHHHHHHhhhhhcccCCCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999754 578899999999999999985 3433 3459999999999999
Q ss_pred ccCCcCCCcccCCCCCCCCcccccCCCCCC
Q 025688 215 PSFPSSFPHLFSGKDHLRCLIPCAIDQVGS 244 (249)
Q Consensus 215 Dil~~~fp~~~~~~~~~~~lVPvg~DQdp~ 244 (249)
|||+ + .+++||||.||+||
T Consensus 163 Dil~------~-----~ad~vpvG~DQ~~h 181 (329)
T PRK08560 163 DIFY------L-----DVDIAVGGMDQRKI 181 (329)
T ss_pred HHHH------h-----CCCEEEechhHHHH
Confidence 9997 3 57899999999965
No 8
>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase. Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding
Probab=100.00 E-value=1.5e-37 Score=281.48 Aligned_cols=143 Identities=34% Similarity=0.516 Sum_probs=133.6
Q ss_pred EEEeccCCCCCCccchhhHH-HHhHHHHHHcCCCcEEEEecChhhhhccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEE
Q 025688 87 YLYTGRGPSSEALHLGHLVP-FMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIF 165 (249)
Q Consensus 87 ~iYtG~dPSg~sLHlGHlv~-~~~l~~lQ~~g~~~v~i~IaD~~k~~~r~l~~e~i~~~~~eni~~iiA~G~dp~kt~i~ 165 (249)
++|||++||| +|||||+++ ++.+++||++| +.++++|||+|+++.+.++++++++++++++++++|||+||+|+.||
T Consensus 1 ~i~tG~~PTG-~lHLG~~~~al~~~~~lQ~ag-~~~~~~IaD~ha~t~~~~~~~~~~~~~~~~~~~~lA~G~dp~k~~i~ 78 (280)
T cd00806 1 RVLSGIQPSG-SLHLGHYLGAFRFWVWLQEAG-YELFFFIADLHALTVKQLDPEELRQNTRENAKDYLACGLDPEKSTIF 78 (280)
T ss_pred CEEEeeCCCc-hhhHHHHHHHHHHHHHHHhCC-CCEEEEecchHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCcccCEEE
Confidence 4899999999 999999999 78899999997 68999999999999766799999999999999999999999999999
Q ss_pred EcCcCCCcccHHHHHHHhccCCHHHHHHhhCCCC------CCceeeeechHHhhhccCCcCCCcccCCCCCCCCcccccC
Q 025688 166 SDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTG------EDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAI 239 (249)
Q Consensus 166 ~ns~~~~~~~~~~~l~l~k~~tv~~m~~~~gf~~------~~~ig~~~YP~lQaaDil~~~fp~~~~~~~~~~~lVPvg~ 239 (249)
.||+|. .++++.|.+++.+|++++++..+|++ +.|+|+|+||+||||||++ | ..|+||||+
T Consensus 79 ~qS~~~--~~~~l~~~l~~~~~~~~l~r~~~fk~~~~~~~~~~~g~~~YP~lqaaDil~--~---------~~~~vpvG~ 145 (280)
T cd00806 79 FQSDVP--EHYELAWLLSCVVTFGELERMTGFKDKSAQGESVNIGLLTYPVLQAADILL--Y---------KACLVPVGI 145 (280)
T ss_pred EcCCcH--HHHHHHHHHhCcCCHHHHHhccchhhhhccCCCCcchhhcchHHHHhhhhh--c---------cCCEEeecc
Confidence 999996 68999999999999999999999976 7899999999999999997 3 579999999
Q ss_pred CCCCC
Q 025688 240 DQVGS 244 (249)
Q Consensus 240 DQdp~ 244 (249)
||+||
T Consensus 146 DQ~~h 150 (280)
T cd00806 146 DQDPH 150 (280)
T ss_pred ccHHH
Confidence 99965
No 9
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=100.00 E-value=3.4e-37 Score=289.46 Aligned_cols=172 Identities=26% Similarity=0.317 Sum_probs=147.3
Q ss_pred hhHHHhhccccccCChhHHHHHHHcCCceEEEeccCCCCCCccchhhHHHHhHHHHHHcCCCcEEEEecChhhhhccC--
Q 025688 58 PHVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKN-- 135 (249)
Q Consensus 58 ~~~l~~Rgi~~~~~d~~~ll~~~e~~k~~~iYtG~dPSg~sLHlGHlv~~~~l~~lQ~~g~~~v~i~IaD~~k~~~r~-- 135 (249)
...|.+||++..+++.+.+.+++++ ++++|+||||||++|||||+++++++++||++|| .++++|||+|+++.++
T Consensus 5 l~~l~~rg~~~~~t~~~~l~~ll~~--~~~vy~G~dPTg~~lHlGh~v~l~~l~~lq~~G~-~~~iligd~ta~igdpsg 81 (377)
T TIGR00234 5 LLLLKKRGLEVQVPEEEELLKLLER--KIKLYVGFDPTAPSLHLGHLVPLLKLRDFQQAGH-EVIVLLGDATALIGDPSG 81 (377)
T ss_pred HHHHHHCCCEEEcCCHHHHHHHhcC--CCEEEEeeCCCCCCccHHHHHHHHHHHHHHHCCC-cEEEEEeccchhhcCCCC
Confidence 3577999999999998888887763 8999999999999999999999999999999996 4566678888765432
Q ss_pred -------CCHHHHHHHHHHHHHHHHHcCCCCCceEEEEcCcCCCcccH-HHHHHHhccCCHHHHHHhhCCC----CCCce
Q 025688 136 -------LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFY-KNMVKVAKCVTYNKVVGIFGFT----GEDHI 203 (249)
Q Consensus 136 -------l~~e~i~~~~~eni~~iiA~G~dp~kt~i~~ns~~~~~~~~-~~~l~l~k~~tv~~m~~~~gf~----~~~~i 203 (249)
++.+++++|+ ++++.++|+|+||+++.|++||+|+.+..| +++.++|+++|+++|+++.+++ +++++
T Consensus 82 ~~~~R~~~~~~~i~~n~-~~i~~~la~gld~~k~~iv~ns~w~~~~~~~~~l~~~~~~~tv~~m~~~~~~~~R~~~~is~ 160 (377)
T TIGR00234 82 KSEERKLLTREEVQENA-ENIKKQIARFLDFEKAKFVNNSEWLLKLNYIDFIRDLGKIFSVNRMLRRDAFSSRLERGISL 160 (377)
T ss_pred hHHHhhcCCHHHHHHHH-HHHHHHHHHhCChhheEEEECchhcCcCCHHHHHHHHhCceEHHHHHcccHHHHHHhcCCCc
Confidence 6788888888 889999999999999999999999876544 4555599999999999998874 36899
Q ss_pred eeeechHHhhhccCCcCCCcccCCCCCCCCcccccCCCCCC
Q 025688 204 GKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQVGS 244 (249)
Q Consensus 204 g~~~YP~lQaaDil~~~fp~~~~~~~~~~~lVPvg~DQdp~ 244 (249)
++|+||+|||||++. + ...++|+|.||.||
T Consensus 161 ~ef~YpllQa~D~~~------l-----~~di~~gG~DQ~~n 190 (377)
T TIGR00234 161 SEFIYPLLQAYDFVY------L-----NVDLQIGGSDQWGN 190 (377)
T ss_pred hhhhhHHHHHHHHHH------H-----cCCeeEecchhHHH
Confidence 999999999999995 2 35699999999854
No 10
>TIGR00233 trpS tryptophanyl-tRNA synthetase. This model represents tryptophanyl-tRNA synthetase. Some members of the family have a pfam00458 domain amino-terminal to the region described by this model.
Probab=100.00 E-value=6.7e-37 Score=282.81 Aligned_cols=146 Identities=33% Similarity=0.450 Sum_probs=133.8
Q ss_pred CceEEEeccCCCCCCccchhhHHHHhHHHHHHcCCCcEEEEecChhhhhccCC-CHHHHHHHHHHHHHHHHHcCCCCCce
Q 025688 84 EKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNL-SVEESQRLARENAKDIIACGFDVTKT 162 (249)
Q Consensus 84 k~~~iYtG~dPSg~sLHlGHlv~~~~l~~lQ~~g~~~v~i~IaD~~k~~~r~l-~~e~i~~~~~eni~~iiA~G~dp~kt 162 (249)
+|+++|||++||| .|||||++++++.+++|++| +.++++|||+|+++.++. +.+.+++++++++++|+|||+||+|+
T Consensus 1 ~~~~v~~G~~PTG-~~HlG~~l~~~~~~~~~q~~-~~~~i~IaD~ha~t~~~~~~~~~~~~~~~~~~~~~lA~GlDp~k~ 78 (328)
T TIGR00233 1 KKFRVLTGIQPSG-KMHLGHYLGAIQTKWLQQFG-VELFICIADLHAITVKDNTDPDALRKAREELAADILAVGLDPKKT 78 (328)
T ss_pred CCCEEEEeeCCCc-HhHHHHHHHHHHHHHHHhCC-CCEEEEeecchhhcCCCCCCHHHHHHHHHHHHHHHHHhCcChhhe
Confidence 4789999999999 99999999999999999776 789999999999997654 77888888888899999999999999
Q ss_pred EEEEcCcCCCcccHHHHHHHhccCCHHHHHHhhCCCCCC-----ceeeeechHHhhhccCCcCCCcccCCCCCCCCcccc
Q 025688 163 FIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGED-----HIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPC 237 (249)
Q Consensus 163 ~i~~ns~~~~~~~~~~~l~l~k~~tv~~m~~~~gf~~~~-----~ig~~~YP~lQaaDil~~~fp~~~~~~~~~~~lVPv 237 (249)
.||.||+|. .+++++|.+++++|++++++..+|++.. ++|+++||+|||||||+ | .+++|||
T Consensus 79 ~if~qS~~~--e~~el~~~l~~~~t~~~l~r~~~~k~k~~~~~~~~g~l~YP~lqaaDil~--~---------~~d~vpv 145 (328)
T TIGR00233 79 FIFLQSDYP--EHYELAWLLSCQVTFGELKRMTQFKDKSQAENVPIGLFSYPVLQAADILL--Y---------QADLVPV 145 (328)
T ss_pred EEEEcCCcH--HHHHHHHHHHccCCHHHHHhccCcchhccCCCCCchhhcchHHHHhhhhh--c---------CCCeeec
Confidence 999999996 6999999999999999999999987654 99999999999999997 3 6899999
Q ss_pred cCCCCCC
Q 025688 238 AIDQVGS 244 (249)
Q Consensus 238 g~DQdp~ 244 (249)
|+||+||
T Consensus 146 G~DQ~~h 152 (328)
T TIGR00233 146 GIDQDQH 152 (328)
T ss_pred ccccHHH
Confidence 9999965
No 11
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=100.00 E-value=4.5e-37 Score=277.53 Aligned_cols=150 Identities=23% Similarity=0.299 Sum_probs=131.0
Q ss_pred EEEeccCCCCCCccchhhHHHHhHHHHHHcCCCcEEEEecChhhhhccC---------CCHHHHHHHHHHHHHHHHHcCC
Q 025688 87 YLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKN---------LSVEESQRLARENAKDIIACGF 157 (249)
Q Consensus 87 ~iYtG~dPSg~sLHlGHlv~~~~l~~lQ~~g~~~v~i~IaD~~k~~~r~---------l~~e~i~~~~~eni~~iiA~G~ 157 (249)
++||||+|||++|||||+++++.++|||++|+ .++++|||.|+++..+ ++.+++++++.++++.++|+|+
T Consensus 1 ~iy~G~~PTg~~lHlGh~~~l~~~~~lq~~g~-~~~~~I~d~~a~~~d~sg~~~~r~~~~~~~i~~n~~~~~~~~~a~g~ 79 (273)
T cd00395 1 TLYCGIDPTADSLHIGHLIGLLTFRRFQHAGH-RPIFLIGGQTGIIGDPSGKKSERTLNDPEEVRQNIRRIAAQYLAVGI 79 (273)
T ss_pred CeEEeEcCCCCCccHHHHHHHHHHHHHHHCCC-CEEEEEecCceeeCCCCCccccccCCCHHHHHHHHHHHHHHHHHhcC
Confidence 48999999998999999999999999999884 6889999999876432 2899999999999999999999
Q ss_pred C--CCceEEEEcCcCCCc-ccHHHHHHHhccCCHHHHHHhhCCCC----CCceeeeechHHhhhccCCcCCCcccCCCCC
Q 025688 158 D--VTKTFIFSDFDYVGG-AFYKNMVKVAKCVTYNKVVGIFGFTG----EDHIGKVSFPPVQAVPSFPSSFPHLFSGKDH 230 (249)
Q Consensus 158 d--p~kt~i~~ns~~~~~-~~~~~~l~l~k~~tv~~m~~~~gf~~----~~~ig~~~YP~lQaaDil~~~fp~~~~~~~~ 230 (249)
| |+++.||+||+|.+. .++++++.+++++|+++|+++++|++ +.++|+|+||+|||||||. + . .+.
T Consensus 80 d~~p~k~~i~~ns~~~~~~~~~~l~~~l~~~~~~~~l~~~~~~k~r~~~~~~~~~~~Yp~lQaaD~l~--l---~--~~~ 152 (273)
T cd00395 80 FEDPTQATLFNNSDWPGPLAHIQFLRDLGKHVYVNYMERKTSFQSRSEEGISATEFTYPPLQAADFLL--L---N--TTE 152 (273)
T ss_pred cCCCcceEEEEccccCCcccHHHHHHHHHccCcHHHHHhChHHHHHhcCCCCchhhhhHHHHHHHHHH--H---h--ccc
Confidence 9 999999999999864 57788888999999999999998864 7899999999999999996 2 1 122
Q ss_pred CCCcccccCCCCCC
Q 025688 231 LRCLIPCAIDQVGS 244 (249)
Q Consensus 231 ~~~lVPvg~DQdp~ 244 (249)
.+++||+|.||+||
T Consensus 153 ~~~~vp~G~DQ~~~ 166 (273)
T cd00395 153 GCDIQPGGSDQWGN 166 (273)
T ss_pred CCcEEEecHHHHHH
Confidence 45699999999964
No 12
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=100.00 E-value=2e-36 Score=272.71 Aligned_cols=146 Identities=22% Similarity=0.234 Sum_probs=133.9
Q ss_pred EEEeccCCCCCCccchhhHHHHhHHHHHHcCCCcEEEEecChhhhhccC---------CCHHHHHHHHHHHHHHHHHcCC
Q 025688 87 YLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKN---------LSVEESQRLARENAKDIIACGF 157 (249)
Q Consensus 87 ~iYtG~dPSg~sLHlGHlv~~~~l~~lQ~~g~~~v~i~IaD~~k~~~r~---------l~~e~i~~~~~eni~~iiA~G~ 157 (249)
++|+||+|||++|||||+++++.++|||++| +.++++|||+|+++.++ .++++++++++++++.++|+|+
T Consensus 2 ~iy~G~~PTg~~lHLG~~~~~~~~~~lq~~g-~~~~ilI~D~~a~~~~~~~~~~~r~~~~~~~i~~~~~~~~~~~~a~g~ 80 (269)
T cd00805 2 KVYIGFDPTAPSLHLGHLVPLMKLRDFQQAG-HEVIVLIGDATAMIGDPSGKSEERKLLDLELIRENAKYYKKQLKAILD 80 (269)
T ss_pred eEEEeeCCCCCcccHHHHHHHHHHHHHHHCC-CeEEEEECCCeeecCCCCCccccccCCCHHHHHHHHHHHHHHHHHHHc
Confidence 6999999999899999999999999999987 68999999999987644 7999999999999999999999
Q ss_pred C--CCceEEEEcCcCCCcccHHHHHHHhccCCHHHHHHhhCCC------CCCceeeeechHHhhhccCCcCCCcccCCCC
Q 025688 158 D--VTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFT------GEDHIGKVSFPPVQAVPSFPSSFPHLFSGKD 229 (249)
Q Consensus 158 d--p~kt~i~~ns~~~~~~~~~~~l~l~k~~tv~~m~~~~gf~------~~~~ig~~~YP~lQaaDil~~~fp~~~~~~~ 229 (249)
| |+|+.||+||+|+++.+|..++++++++++++|+++.+++ ++.++|+|+||+||||||+. +
T Consensus 81 ~~~p~k~~i~~~s~~~~~l~~~~~l~l~~~~~~~~l~~~~~~k~r~~~~~~~~~~~~~YP~lQaaDi~~------l---- 150 (269)
T cd00805 81 FIPPEKAKFVNNSDWLLSLYTLDFLRLGKHFTVNRMLRRDAVKVRLEEEEGISFSEFIYPLLQAYDFVY------L---- 150 (269)
T ss_pred cCCCcceEEEEchHhhccCCHHHHHHHHhhCcHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhhHHH------H----
Confidence 6 9999999999998878899999999999999999988763 46789999999999999996 3
Q ss_pred CCCCcccccCCCCCC
Q 025688 230 HLRCLIPCAIDQVGS 244 (249)
Q Consensus 230 ~~~~lVPvg~DQdp~ 244 (249)
.+|+||||.||.||
T Consensus 151 -~~~l~~~G~DQ~~~ 164 (269)
T cd00805 151 -DVDLQLGGSDQRGN 164 (269)
T ss_pred -hCCeeEecHHHHHH
Confidence 47999999999964
No 13
>PRK12556 tryptophanyl-tRNA synthetase; Provisional
Probab=100.00 E-value=2.9e-35 Score=272.15 Aligned_cols=144 Identities=15% Similarity=0.186 Sum_probs=126.9
Q ss_pred eEEEeccCCCCCCccchhhHHHHh-HHHHHHcCCCcEEEEecChhhhhccCCCHHHHHHHHHHHHHHHHHcCCCCCceEE
Q 025688 86 FYLYTGRGPSSEALHLGHLVPFMF-TKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFI 164 (249)
Q Consensus 86 ~~iYtG~dPSg~sLHlGHlv~~~~-l~~lQ~~g~~~v~i~IaD~~k~~~r~l~~e~i~~~~~eni~~iiA~G~dp~kt~i 164 (249)
-++|+|++||| .||||||+++++ +.++|+..+..++++|||+|+++. ..+++++++++++|+++|+|||+||+|++|
T Consensus 4 ~~v~sGiqPTG-~~HLGnylga~k~~~~lq~~~~~~~~~~IADlHalt~-~~~~~~l~~~~~~~~~~~lA~GlDP~k~~i 81 (332)
T PRK12556 4 KIMLTGIKPTG-YPHLGNYIGAIKPALQMAKNYEGKALYFIADYHALNA-VHDPEQFRSYTREVAATWLSLGLDPEDVIF 81 (332)
T ss_pred CEEEEEECCCC-cchHHHHHHHHHHHHHHHHhcCCeEEEEEechhhccC-CCCHHHHHHHHHHHHHHHhheeecccceEE
Confidence 37999999999 999999999887 678988766789999999999874 479999999999999999999999999999
Q ss_pred EEcCcCCCcccHHHHHHHhccCCHHHHHHhh--------------CCCCCCceeeeechHHhhhccCCcCCCcccCCCCC
Q 025688 165 FSDFDYVGGAFYKNMVKVAKCVTYNKVVGIF--------------GFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDH 230 (249)
Q Consensus 165 ~~ns~~~~~~~~~~~l~l~k~~tv~~m~~~~--------------gf~~~~~ig~~~YP~lQaaDil~~~fp~~~~~~~~ 230 (249)
|.||++. .++++.|.+++.++++++.+.- |++++.|+|+++||+|||||||+ |
T Consensus 82 f~qS~v~--~~~eL~~il~~~t~~g~L~R~~~~K~k~~~~~~~~~~~~~~~~~gll~YPvLqAADIl~--~--------- 148 (332)
T PRK12556 82 YRQSDVP--EIFELAWILSCLTPKGLMNRAHAYKAKVDQNKEAGLDLDAGVNMGLYTYPILMAADILL--F--------- 148 (332)
T ss_pred EECCCch--HHHHHHHHHHccchHHHHHhccHHHHHHhhhhhhccccCCCCcchhhhchHHHhhhhhh--c---------
Confidence 9999985 4789999999999988776532 23456799999999999999997 3
Q ss_pred CCCcccccCCCCCC
Q 025688 231 LRCLIPCAIDQVGS 244 (249)
Q Consensus 231 ~~~lVPvg~DQdp~ 244 (249)
++|+||||+||+||
T Consensus 149 ~~d~VpvG~DQ~qh 162 (332)
T PRK12556 149 QATHVPVGKDQIQH 162 (332)
T ss_pred cCCEEEeccccHHH
Confidence 68999999999965
No 14
>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed
Probab=100.00 E-value=1.1e-34 Score=268.62 Aligned_cols=143 Identities=25% Similarity=0.279 Sum_probs=122.1
Q ss_pred eEEEeccCCCCCCccchhhHHHHh-HHHHHHcCCCcEEEEecChhhhhccCCCHHHHHHHHHHHHHHHHHcCCCCCceEE
Q 025688 86 FYLYTGRGPSSEALHLGHLVPFMF-TKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFI 164 (249)
Q Consensus 86 ~~iYtG~dPSg~sLHlGHlv~~~~-l~~lQ~~g~~~v~i~IaD~~k~~~r~l~~e~i~~~~~eni~~iiA~G~dp~kt~i 164 (249)
-++|||++||| .|||||++++++ +.+||++|+ ++++|||+|+++++..+++++++++++|+++|+|||+||+|++|
T Consensus 3 ~~v~sG~~PTG-~~HLGn~l~~~~~~~~lQ~~~~--~~i~IaD~ha~~~~~~~~~~i~~~~~~~~~~~lA~G~dp~k~~i 79 (333)
T PRK12282 3 PIILTGDRPTG-KLHLGHYVGSLKNRVALQNEHE--QFVLIADQQALTDNAKNPEKIRRNILEVALDYLAVGIDPAKSTI 79 (333)
T ss_pred CEEEEeeCCCC-cchHHHHHHHHHHHHHHHhCCC--EEEEEccchhHhCCCCCHHHHHHHHHHHHHHHHHhCcChhHeEE
Confidence 37999999999 799999999776 559999996 79999999999876689999999999999999999999999999
Q ss_pred EEcCcCCCcccHHHHHHHhccCCHHHHHHh---------hCCCCCCceeeeechHHhhhccCCcCCCcccCCCCCCCCcc
Q 025688 165 FSDFDYVGGAFYKNMVKVAKCVTYNKVVGI---------FGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLI 235 (249)
Q Consensus 165 ~~ns~~~~~~~~~~~l~l~k~~tv~~m~~~---------~gf~~~~~ig~~~YP~lQaaDil~~~fp~~~~~~~~~~~lV 235 (249)
|.||+|. .++++.+.++..++++++.+. ++++++.++|+++||+||||||++ | .+|+|
T Consensus 80 ~~qS~~~--e~~~l~~~l~~~~~~~~l~r~~~~k~~~~~~~~~~~~~~g~l~YP~lqaaDIl~------~-----~~d~v 146 (333)
T PRK12282 80 FIQSQIP--ELAELTMYYMNLVTVARLERNPTVKTEIAQKGFGRSIPAGFLTYPVSQAADITA------F-----KATLV 146 (333)
T ss_pred EECCcch--HHHHHHHHHHhhchHHHHhhchHHHHHHhccCCCCCCcchhhcchHHHHHHHHh------h-----CCCEE
Confidence 9999994 355555666666666655432 345677899999999999999997 3 68999
Q ss_pred cccCCCCCC
Q 025688 236 PCAIDQVGS 244 (249)
Q Consensus 236 Pvg~DQdp~ 244 (249)
|||+||+||
T Consensus 147 pvG~DQ~~h 155 (333)
T PRK12282 147 PVGDDQLPM 155 (333)
T ss_pred EeccccHHH
Confidence 999999963
No 15
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=9.4e-35 Score=269.02 Aligned_cols=141 Identities=22% Similarity=0.248 Sum_probs=125.6
Q ss_pred EEEeccCCCCCCccchhhHHHH-hHHHHHHcCCCcEEEEecChhhhhccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEE
Q 025688 87 YLYTGRGPSSEALHLGHLVPFM-FTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIF 165 (249)
Q Consensus 87 ~iYtG~dPSg~sLHlGHlv~~~-~l~~lQ~~g~~~v~i~IaD~~k~~~r~l~~e~i~~~~~eni~~iiA~G~dp~kt~i~ 165 (249)
++|+|++||| .|||||+++++ .+++||+. ..++++|||+|+++.+ .+.+++++++++++++|+|||+||+|+.||
T Consensus 3 ~v~~G~~PTG-~lHLG~~~g~~~~~~~lQ~~--~~~~~~IaD~ha~t~~-~~~~~i~~~~~~~~~~~lA~GlDp~k~~if 78 (333)
T PRK00927 3 RVLSGIQPTG-KLHLGNYLGAIKNWVELQDE--YECFFCIADLHALTVP-QDPEELRENTRELAADYLACGIDPEKSTIF 78 (333)
T ss_pred EEEEeeCCCc-cchHHhHHHHHHHHHHHHhc--CCeEEEEecHHHHhCC-CCHHHHHHHHHHHHHHHHeEccChhheEEE
Confidence 6999999999 69999999776 46679996 5699999999999875 599999999999999999999999999999
Q ss_pred EcCcCCCcccHHHHHHHhccCCHHHHHHhhCCC-------CCCceeeeechHHhhhccCCcCCCcccCCCCCCCCccccc
Q 025688 166 SDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFT-------GEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCA 238 (249)
Q Consensus 166 ~ns~~~~~~~~~~~l~l~k~~tv~~m~~~~gf~-------~~~~ig~~~YP~lQaaDil~~~fp~~~~~~~~~~~lVPvg 238 (249)
.||+|. .+.++.|.+++.++++++.+..+++ ++.|+|+++||+|||||||+ + .+|+||||
T Consensus 79 ~qS~~~--~~~el~~~l~~~~~~~~l~r~~~~k~~~~~~~~~~~~g~~~YP~lQaaDil~------~-----~~divpvG 145 (333)
T PRK00927 79 VQSHVP--EHAELAWILNCITPLGELERMTQFKDKSAKQKENVSAGLFTYPVLMAADILL------Y-----KADLVPVG 145 (333)
T ss_pred EeCCCc--hhHHHHHHHHhhhhHHHHHhhhhHHHHHhccCCCCCcHhhhcHHHHHHHHHh------c-----CCCEEeec
Confidence 999985 4678888899999999998876643 57899999999999999997 3 68999999
Q ss_pred CCCCCC
Q 025688 239 IDQVGS 244 (249)
Q Consensus 239 ~DQdp~ 244 (249)
+||+||
T Consensus 146 ~DQ~~h 151 (333)
T PRK00927 146 EDQKQH 151 (333)
T ss_pred cchHHH
Confidence 999954
No 16
>PTZ00126 tyrosyl-tRNA synthetase; Provisional
Probab=100.00 E-value=3.1e-34 Score=269.60 Aligned_cols=170 Identities=13% Similarity=0.143 Sum_probs=146.4
Q ss_pred HHHhhccccccCChhHHHHHHHcCCceEEEeccCCCCCCccchhh-HHHHhHHHHHHcCCCcEEEEecChhhhhccC--C
Q 025688 60 VFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHL-VPFMFTKYLQDAFKVPLVIQLTDDEKCMWKN--L 136 (249)
Q Consensus 60 ~l~~Rgi~~~~~d~~~ll~~~e~~k~~~iYtG~dPSg~sLHlGHl-v~~~~l~~lQ~~g~~~v~i~IaD~~k~~~r~--l 136 (249)
.++.||..+-+ ..++|.+++++++++++|+|++||| .|||||. +..+.+++||++| +.++++|||+|+++.++ .
T Consensus 42 ~~i~r~~~e~i-~~eel~~~l~~~~~~~v~~G~~PTG-~lHLG~g~i~~~~~~~lq~~G-~~v~~~IaD~hA~~~~~~g~ 118 (383)
T PTZ00126 42 KLCLSIGEECI-QPEELRELLKLKERPICYDGFEPSG-RMHIAQGILKAINVNKLTKAG-CVFVFWVADWFALLNNKMGG 118 (383)
T ss_pred HHHhcCceeec-CHHHHHHHHhcCCCCEEEEEECCCC-cccccchHhHhHHHHHHHhCC-CeEEEEEccceeecCCCCCC
Confidence 56788877555 6788999998889999999999999 7999994 5556788999998 47999999999988654 6
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCCCceEEEEcCcCCC---cccHHHHHHHhccCCHHHHHHh---hCCC--CCCceeeeec
Q 025688 137 SVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVG---GAFYKNMVKVAKCVTYNKVVGI---FGFT--GEDHIGKVSF 208 (249)
Q Consensus 137 ~~e~i~~~~~eni~~iiA~G~dp~kt~i~~ns~~~~---~~~~~~~l~l~k~~tv~~m~~~---~gf~--~~~~ig~~~Y 208 (249)
+++++++.++++++.++|||+||+|+.||.||+|+. ..+|.+++++++++|+++|++. .++. ++.++|+|.|
T Consensus 119 ~l~~i~~~~~~~~~~~~A~GlDp~k~~i~~qS~~v~~~~~l~w~~~~~la~~~tl~r~~r~~~~~~r~~~~~~~~g~l~Y 198 (383)
T PTZ00126 119 DLEKIRKVGEYFIEVWKAAGMDMDNVRFLWASEEINKNPNDYWLRVMDIARSFNITRIKRCSQIMGRSEGDEQPCAQILY 198 (383)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCccceEEEECChhhhhhhHHHHHHHHHHhccCCHHHHHhhhhhhccccCCCCCchhhhh
Confidence 899999999999999999999999999999999864 3678999999999999999864 3443 3468999999
Q ss_pred hHHhhhccCCcCCCcccCCCCCCCCcccccCCCCC
Q 025688 209 PPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQVG 243 (249)
Q Consensus 209 P~lQaaDil~~~fp~~~~~~~~~~~lVPvg~DQdp 243 (249)
|+|||||||. + ++++||||.||+|
T Consensus 199 P~LQaaDil~------l-----~adivpvG~DQ~~ 222 (383)
T PTZ00126 199 PCMQCADIFY------L-----KADICQLGMDQRK 222 (383)
T ss_pred hHHHhhhhhc------c-----CCCEEEeCccHHH
Confidence 9999999997 3 6889999999984
No 17
>PRK12283 tryptophanyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=6.3e-34 Score=267.04 Aligned_cols=143 Identities=15% Similarity=0.192 Sum_probs=127.1
Q ss_pred EEEeccCCCCCCccchhhHHHHhHHHHHHcCCCcEEEEecChhhhhccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEE
Q 025688 87 YLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFS 166 (249)
Q Consensus 87 ~iYtG~dPSg~sLHlGHlv~~~~l~~lQ~~g~~~v~i~IaD~~k~~~r~l~~e~i~~~~~eni~~iiA~G~dp~kt~i~~ 166 (249)
++|||++||| .||||||++++. .|.+.+....++++|||+|+++.++.+++++++++++++++|+|||+||+|+.||.
T Consensus 4 ~v~sGiqPSG-~~HLGnylG~ik-~wv~lq~~~~~~~~IADlHAlt~~~~d~~~ir~~~~~~~a~~lA~GlDP~k~~if~ 81 (398)
T PRK12283 4 RVLSGMRPTG-RLHLGHYHGVLK-NWVKLQHEYECFFFVADWHALTTHYETPEVIEKNVWDMVIDWLAAGVDPAQATLFI 81 (398)
T ss_pred EEEEEeCCCC-cchHHHHHHHHH-HHHHHhcCCcEEEEeecHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCccceEEEE
Confidence 6999999999 999999999885 56543333579999999999997667999999999999999999999999999999
Q ss_pred cCcCCCcccHHHHHHHhccCCHHHHHHhhCC---------CCCCceeeeechHHhhhccCCcCCCcccCCCCCCCCcccc
Q 025688 167 DFDYVGGAFYKNMVKVAKCVTYNKVVGIFGF---------TGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPC 237 (249)
Q Consensus 167 ns~~~~~~~~~~~l~l~k~~tv~~m~~~~gf---------~~~~~ig~~~YP~lQaaDil~~~fp~~~~~~~~~~~lVPv 237 (249)
||++. .+.++.|.++..++++++.+..++ .++.++|+++||+|||||||+ | ++++|||
T Consensus 82 QS~v~--eh~eL~wil~~~t~~~~L~R~~~~Kdk~~~~~~~~~~~~Gll~YPvLqAADILl--~---------~a~iVPV 148 (398)
T PRK12283 82 QSKVP--EHAELHLLLSMITPLGWLERVPTYKDQQEKLKEKDLSTYGFLGYPLLQSADILI--Y---------RAGLVPV 148 (398)
T ss_pred CCCch--HHHHHHHHHHhhccHHHHHhhhHHHHHHhhhccccCCcchhhcCcHHHHHHHHh--c---------CCCEeee
Confidence 99984 688999999999999998888766 245789999999999999997 3 7999999
Q ss_pred cCCCCCC
Q 025688 238 AIDQVGS 244 (249)
Q Consensus 238 g~DQdp~ 244 (249)
|+||+||
T Consensus 149 G~DQ~qH 155 (398)
T PRK12283 149 GEDQVPH 155 (398)
T ss_pred ccccHHH
Confidence 9999987
No 18
>PLN02886 aminoacyl-tRNA ligase
Probab=100.00 E-value=3e-33 Score=262.43 Aligned_cols=142 Identities=19% Similarity=0.230 Sum_probs=123.3
Q ss_pred eEEEeccCCCCCCccchhhHHHHh-HHHHHHcCCCcEEEEecChhhhhccCCCHHHHHHHHHHHHHHHHHcCCCCCceEE
Q 025688 86 FYLYTGRGPSSEALHLGHLVPFMF-TKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFI 164 (249)
Q Consensus 86 ~~iYtG~dPSg~sLHlGHlv~~~~-l~~lQ~~g~~~v~i~IaD~~k~~~r~l~~e~i~~~~~eni~~iiA~G~dp~kt~i 164 (249)
.++|+|++||| .||||||++.+. +.+||+ + ..++++|||+|+++.+ .+++++++++++++++|+|||+||+|+.|
T Consensus 47 ~~v~sGiqPSG-~lHLGnylGai~~~v~lQ~-~-~~~~~~IADlHAlt~~-~~~~~lr~~~~~~~a~~lA~GlDP~ks~i 122 (389)
T PLN02886 47 KRVVSGVQPTG-SIHLGNYLGAIKNWVALQE-T-YDTFFCVVDLHAITLP-HDPRELGKATRSTAAIYLACGIDPSKASV 122 (389)
T ss_pred CeEEEEECCCC-ccHHHHHHHHHHHHHHHhc-c-CCEEEEEecHHHhhCC-CCHHHHHHHHHHHHHHHHHcCcCccceEE
Confidence 36999999998 999999998764 778998 4 5789999999999864 79999999999999999999999999999
Q ss_pred EEcCcCCCcccHHHHHHHhccCCHHHHHHhhCC--------CCCCceeeeechHHhhhccCCcCCCcccCCCCCCCCccc
Q 025688 165 FSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGF--------TGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIP 236 (249)
Q Consensus 165 ~~ns~~~~~~~~~~~l~l~k~~tv~~m~~~~gf--------~~~~~ig~~~YP~lQaaDil~~~fp~~~~~~~~~~~lVP 236 (249)
|.||++. .+.++.|.+++.++++++.+.-.+ +++.++|+|+||+|||||||+ | ++++||
T Consensus 123 f~QS~v~--e~~eL~wil~~~t~~g~L~R~~q~K~k~~~~~~~~~~~gll~YPvLqAADILl--~---------~a~~VP 189 (389)
T PLN02886 123 FVQSHVP--AHAELMWLLSCSTPIGWLNKMIQFKEKSRKAGDENVGVGLLTYPVLMASDILL--Y---------QADLVP 189 (389)
T ss_pred EEeCCCc--hhHHHHHHHHhhCcHHHHHhcchHHHHHHhcCCCCCChHhhhChHHHHhhhhh--c---------CCCeEE
Confidence 9999974 567788888888887777655443 245799999999999999997 3 789999
Q ss_pred ccCCCCCC
Q 025688 237 CAIDQVGS 244 (249)
Q Consensus 237 vg~DQdp~ 244 (249)
||+||+||
T Consensus 190 VG~DQ~qH 197 (389)
T PLN02886 190 VGEDQKQH 197 (389)
T ss_pred EccchHHH
Confidence 99999976
No 19
>PRK12284 tryptophanyl-tRNA synthetase; Reviewed
Probab=99.98 E-value=7.7e-33 Score=261.73 Aligned_cols=145 Identities=17% Similarity=0.101 Sum_probs=123.1
Q ss_pred ceEEEeccCCCCCCccchhhHHHHh-HHHHHHcCCCcEEEEecChhhhhccCCCHHHHHHHHHHHHHHHHHcCCCCCceE
Q 025688 85 KFYLYTGRGPSSEALHLGHLVPFMF-TKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTF 163 (249)
Q Consensus 85 ~~~iYtG~dPSg~sLHlGHlv~~~~-l~~lQ~~g~~~v~i~IaD~~k~~~r~l~~e~i~~~~~eni~~iiA~G~dp~kt~ 163 (249)
..++|||++||| .||||||++.++ +.++|+..+..++++|||+|++|. ..+++++++++++++++|+|||+||+|+.
T Consensus 2 ~~rvlSGiqPTG-~lHLGNylGaik~~v~lq~q~~~~~~~~IADlHAlT~-~~dp~~lr~~~~e~aa~~LA~GlDPek~~ 79 (431)
T PRK12284 2 TTRVLTGITTTG-TPHLGNYAGAIRPAIAASRQPGVESFYFLADYHALIK-CDDPARIQRSTLEIAATWLAAGLDPERVT 79 (431)
T ss_pred ceEEEEEecCCC-cchHHHHHHHHHHHHHHHHhCCCcEEEEeechhhccC-CCCHHHHHHHHHHHHHHHHHhCCCccceE
Confidence 357999999999 899999999985 677876444789999999999984 48999999999999999999999999999
Q ss_pred EEEcCcCCCcccHHHHHHHhccCCHHHHHHhh------------CCC--CCCceeeeechHHhhhccCCcCCCcccCCCC
Q 025688 164 IFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIF------------GFT--GEDHIGKVSFPPVQAVPSFPSSFPHLFSGKD 229 (249)
Q Consensus 164 i~~ns~~~~~~~~~~~l~l~k~~tv~~m~~~~------------gf~--~~~~ig~~~YP~lQaaDil~~~fp~~~~~~~ 229 (249)
||.||++. .+.++.|.+++.++++++.+.- |++ ++.++|+|+||+|||||||+ |
T Consensus 80 if~QSdvp--eh~EL~wiL~~it~~g~L~Rm~q~K~k~~~~~~~g~~~~~~i~~Gll~YPvLqAADILl--y-------- 147 (431)
T PRK12284 80 FYRQSDIP--EIPELTWLLTCVAGKGLLNRAHAYKAAVDKNVAAGEDPDAGVTAGLFMYPVLMAADILM--F-------- 147 (431)
T ss_pred EEECCcch--hHHHHHHHHHhhhhHHHHHhhhHHHHHHHhhhccccCcccCcchHHhhchHHHHhhhhh--c--------
Confidence 99999985 5677888777777766654432 222 34689999999999999998 4
Q ss_pred CCCCcccccCCCCCC
Q 025688 230 HLRCLIPCAIDQVGS 244 (249)
Q Consensus 230 ~~~~lVPvg~DQdp~ 244 (249)
++++||||+||.||
T Consensus 148 -~ad~VPVG~DQ~qH 161 (431)
T PRK12284 148 -NAHKVPVGRDQIQH 161 (431)
T ss_pred -CCCEEEEcchhHHH
Confidence 68999999999987
No 20
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.98 E-value=2.8e-32 Score=256.77 Aligned_cols=155 Identities=26% Similarity=0.369 Sum_probs=129.9
Q ss_pred hHHHhhccccccCChhHHHHHHHcCCceEEEeccCCCCCCccchhhHHHHhHHHHHHcCCCcEEEE------ecChh-hh
Q 025688 59 HVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQ------LTDDE-KC 131 (249)
Q Consensus 59 ~~l~~Rgi~~~~~d~~~ll~~~e~~k~~~iYtG~dPSg~sLHlGHlv~~~~l~~lQ~~g~~~v~i~------IaD~~-k~ 131 (249)
..|.+||++..+++++.+.++++.+ ++++|+||||||+++||||+|+++++++||++||.|++++ |+||+ +.
T Consensus 7 ~~L~~Rg~~~~i~~ee~l~~ll~~~-~~~~Y~GfDPTa~slHlGhlv~l~kL~~fQ~aGh~~ivLigd~ta~IgDpsGk~ 85 (401)
T COG0162 7 LELIKRGLIEQITDEEELRKLLEEG-PLRVYIGFDPTAPSLHLGHLVPLMKLRRFQDAGHKPIVLIGDATAMIGDPSGKS 85 (401)
T ss_pred HHHHHcCchhccCcHHHHHHHHhcC-CceEEEeeCCCCCccchhhHHHHHHHHHHHHCCCeEEEEecccceecCCCCCCH
Confidence 4789999999999999999988844 9999999999999999999999999999999998776665 66665 43
Q ss_pred h-ccCCCHHHHHHHHHHHHHHHHH-cCCCCC-ceEEEEcCcCCCcccHHHHHH-HhccCCHHHHHHhhCCC------CCC
Q 025688 132 M-WKNLSVEESQRLARENAKDIIA-CGFDVT-KTFIFSDFDYVGGAFYKNMVK-VAKCVTYNKVVGIFGFT------GED 201 (249)
Q Consensus 132 ~-~r~l~~e~i~~~~~eni~~iiA-~G~dp~-kt~i~~ns~~~~~~~~~~~l~-l~k~~tv~~m~~~~gf~------~~~ 201 (249)
. ++.++.|++. +|++.|.. +|...+ ++.+++||+|+++..|..+++ +|+++|+|+|+++..+. .++
T Consensus 86 e~r~~l~~e~v~----~n~~~i~~ql~~~ld~k~~~v~ns~w~~~~~y~~~l~~~g~~~sv~rml~~d~~~~R~~~~~~i 161 (401)
T COG0162 86 EERKLLTRETVL----ENAETIKKQLGKFLDNKAEFVNNSDWLKKLNYLDFLRDVGKHFSVNRMLRRDDVKKRLEREQGI 161 (401)
T ss_pred HHHhhccHHHHH----HHHHHHHHHhcccCCcceEEEechHHhCcCCHHHHHHHHHhHccHHHHHHhhhHHHHhccCCCC
Confidence 2 3336666666 67777665 465555 999999999998877877777 99999999999987652 258
Q ss_pred ceeeeechHHhhhccCC
Q 025688 202 HIGKVSFPPVQAVPSFP 218 (249)
Q Consensus 202 ~ig~~~YP~lQaaDil~ 218 (249)
++.+|.||+|||+|++.
T Consensus 162 s~~Ef~YpLmQayD~~~ 178 (401)
T COG0162 162 SFTEFNYPLLQAYDFVY 178 (401)
T ss_pred chhhhhhHHHHHHHHHH
Confidence 99999999999999985
No 21
>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2JAN_A 3P0J_B 3P0I_B 3P0H_B 1YID_C 2A4M_C 1YIA_C 1YI8_C 2EL7_A 3PRH_A ....
Probab=99.97 E-value=3.4e-33 Score=253.42 Aligned_cols=149 Identities=30% Similarity=0.427 Sum_probs=127.9
Q ss_pred cCCceEEEeccCCCCCCccchhhHHHHhHHHHHHcCCCcEEEEecChhhhhccCC--CHHHHHHHHHHHHHH--HHHcCC
Q 025688 82 KGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNL--SVEESQRLARENAKD--IIACGF 157 (249)
Q Consensus 82 ~~k~~~iYtG~dPSg~sLHlGHlv~~~~l~~lQ~~g~~~v~i~IaD~~k~~~r~l--~~e~i~~~~~eni~~--iiA~G~ 157 (249)
+++++++||||+|||. |||||+++++.++|||++| +.++++|||+|+++.++. +++.+++++.+++.. ++|+|+
T Consensus 2 ~~~~~~~y~G~~PTg~-lHlG~l~~~~~~~~lq~~g-~~~~i~iaD~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~g~ 79 (292)
T PF00579_consen 2 ENKPFRVYTGIDPTGD-LHLGHLVPIMKLIWLQKAG-FKVIILIADLHALLGDPSKGDERKIRSRAEYNINDKAILALGL 79 (292)
T ss_dssp THSSEEEEEEEESSSS--BHHHHHHHHHHHHHHHTT-SEEEEEEEHHHHHHTTTTGSSHHHHHHHHHHHHHHHHHHHTTS
T ss_pred CCCCcEEEEeECCCCc-ccchHHHHHHHHHHHHhcC-CccceEecchhhcccCcccccHHHHHHHHHHHHHHHHHHHhcc
Confidence 4689999999999995 9999999999999999977 799999999999887654 799999999988888 999999
Q ss_pred CCCceEEEEcCcCCCcc-cHHHHHHHhccCCHHHHHHhhC------CCCCCceeeeechHHhhhccCCcCCCcccCCCCC
Q 025688 158 DVTKTFIFSDFDYVGGA-FYKNMVKVAKCVTYNKVVGIFG------FTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDH 230 (249)
Q Consensus 158 dp~kt~i~~ns~~~~~~-~~~~~l~l~k~~tv~~m~~~~g------f~~~~~ig~~~YP~lQaaDil~~~fp~~~~~~~~ 230 (249)
||+++.|++||+|..+. ++..+..+++.+++++|.+..+ .+++.++|+|+||+|||||++. +
T Consensus 80 d~~k~~i~~~s~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~Yp~lQaaD~~~------l----- 148 (292)
T PF00579_consen 80 DPEKTEIFRQSDWPEHMELWWFLSDVARLFSLNRMLRFKDVKKRLKNGEGISLGEFSYPLLQAADILL------L----- 148 (292)
T ss_dssp HTTTEEEEEGHHHHCHHHHHHHHHHHHBHHHHHHHHHHHHHHHHHSSTTTSBHHHHHHHHHHHHHHHH------T-----
T ss_pred CccceEEEeCCCcccccchhhhhcccccccchhhhhhhcccccccccccCcceeeEEcccccccceee------e-----
Confidence 99999999999997643 3444455888888888877654 2347899999999999999996 2
Q ss_pred CCCcccccCCCCC
Q 025688 231 LRCLIPCAIDQVG 243 (249)
Q Consensus 231 ~~~lVPvg~DQdp 243 (249)
.+++||||+||+|
T Consensus 149 ~~~~~~~G~DQ~~ 161 (292)
T PF00579_consen 149 KADLVPGGIDQRG 161 (292)
T ss_dssp THSEEEEEGGGHH
T ss_pred ccccccccchHHH
Confidence 4779999999994
No 22
>PTZ00348 tyrosyl-tRNA synthetase; Provisional
Probab=99.97 E-value=1.2e-31 Score=266.17 Aligned_cols=171 Identities=16% Similarity=0.167 Sum_probs=144.4
Q ss_pred HHHhhccccccCChhHHHHHHHcCCceEEEeccCCCCCCccchh-hHHHHhHHHHHHcCCCcEEEEecChhhhhccC--C
Q 025688 60 VFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGH-LVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKN--L 136 (249)
Q Consensus 60 ~l~~Rgi~~~~~d~~~ll~~~e~~k~~~iYtG~dPSg~sLHlGH-lv~~~~l~~lQ~~g~~~v~i~IaD~~k~~~r~--l 136 (249)
.+++|+.-. +...++|.+++++++++++|+|++||| .||||| +++.+.+..+++.| +.++++|||+|++++.+ .
T Consensus 8 ~ll~r~~~E-vi~~eeL~~ll~~~~~~rv~sGi~PTG-~lHLGng~~~aik~~~~~q~g-~~~~~lIAD~HAlt~~~~~~ 84 (682)
T PTZ00348 8 KLLRSVGEE-CIQESELRNLIEKKPLIRCYDGFEPSG-RMHIAQGIFKAVNVNKCTQAG-CEFVFWVADWFALMNDKVGG 84 (682)
T ss_pred HHHhcCcee-ecCHHHHHHHHhcCCCCEEEEeeCCCC-cCeeccHHHHHHHHHHHHhCC-CeEEEEEcchhhhcCCCCCC
Confidence 467888654 557788999998888999999999999 799999 45666655566667 57999999999988644 5
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCCCceEEEEcCcCCC---cccHHHHHHHhccCCHHHHHHh---hCCCC-CCceeeeech
Q 025688 137 SVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVG---GAFYKNMVKVAKCVTYNKVVGI---FGFTG-EDHIGKVSFP 209 (249)
Q Consensus 137 ~~e~i~~~~~eni~~iiA~G~dp~kt~i~~ns~~~~---~~~~~~~l~l~k~~tv~~m~~~---~gf~~-~~~ig~~~YP 209 (249)
+.++++.+++++++.++|+|+||+|+.||.||+|+. ..+|.+++.+++++|+++++++ +|+++ +.|+|++.||
T Consensus 85 ~l~~i~~~~~~~~~~~lA~GlDpeK~~~~~qSd~i~e~~el~w~lv~~v~~l~t~~q~K~~~~~~g~~~~~i~~gll~YP 164 (682)
T PTZ00348 85 ELEKIRIVGRYLIEVWKAAGMDMDKVLFLWSSEEITNHANTYWRTVLDIGRQNTIARIKKCCTIMGKTEGTLTAAQVLYP 164 (682)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCccceEEEECcHhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHhhcccCCCCchHHHhhh
Confidence 889999888899999999999999999999999754 2678888899999999999986 45544 4799999999
Q ss_pred HHhhhccCCcCCCcccCCCCCCCCcccccCCCCCC
Q 025688 210 PVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQVGS 244 (249)
Q Consensus 210 ~lQaaDil~~~fp~~~~~~~~~~~lVPvg~DQdp~ 244 (249)
+|||||||+ + ++++||||+||+||
T Consensus 165 vLQAADIl~------l-----~adivpvG~DQ~qh 188 (682)
T PTZ00348 165 LMQCADIFF------L-----KADICQLGLDQRKV 188 (682)
T ss_pred HHHhhcccc------c-----CCCEEEeCccHHHH
Confidence 999999997 3 58899999999954
No 23
>KOG2713 consensus Mitochondrial tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=3.3e-29 Score=223.70 Aligned_cols=145 Identities=18% Similarity=0.279 Sum_probs=125.8
Q ss_pred ceEEEeccCCCCCCccchhhHHHHh-HHHHHHcCCC--cEEEEecChhhhhccCCCHHHHHHHHHHHHHHHHHcCCCCCc
Q 025688 85 KFYLYTGRGPSSEALHLGHLVPFMF-TKYLQDAFKV--PLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTK 161 (249)
Q Consensus 85 ~~~iYtG~dPSg~sLHlGHlv~~~~-l~~lQ~~g~~--~v~i~IaD~~k~~~r~l~~e~i~~~~~eni~~iiA~G~dp~k 161 (249)
+-++++|++||| ++|||||++.+. |..||+..+. .+++.|+|.|+++.. .++.+++++..+.++.++|||+||+|
T Consensus 13 ~~rvfSGIQPTG-~~HLGNYLGai~~Wv~LQ~~~d~~~~~~f~vvDlHaITvp-~dp~~lrq~~~dm~A~lLAcGIdp~K 90 (347)
T KOG2713|consen 13 PKRVFSGIQPTG-IPHLGNYLGAIKPWVQLQNEYDKNILVLFSVVDLHAITVP-QDPAELRQATHDMAASLLACGIDPEK 90 (347)
T ss_pred cceeEeccCCCC-CchhhhhhhhhhHHHHHHHHhcCCceEEEEEeeceeecCC-CChHHHHHHHHHHHHHHHHhccCccc
Confidence 568999999999 999999999986 6669997643 378889999999875 55569999999999999999999999
Q ss_pred eEEEEcCcCCCcccHHHHHHHhccCCHHHHHHhhCCC--------CCCceeeeechHHhhhccCCcCCCcccCCCCCCCC
Q 025688 162 TFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFT--------GEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRC 233 (249)
Q Consensus 162 t~i~~ns~~~~~~~~~~~l~l~k~~tv~~m~~~~gf~--------~~~~ig~~~YP~lQaaDil~~~fp~~~~~~~~~~~ 233 (249)
+.+|.||++. .+.++.|.+++..|++++.+.-.++ .+.++|.|+||+||||||++ | +.+
T Consensus 91 s~lF~QS~Vp--qh~el~WlLsslt~mg~L~rm~Q~KeKs~~~~~~~~~vGLftYPvLqAADILL--Y---------ksT 157 (347)
T KOG2713|consen 91 SSLFVQSDVP--QHAELSWLLSSLTTMGRLARMPQWKEKSERFKVGDVPVGLFTYPVLQAADILL--Y---------KST 157 (347)
T ss_pred ceeeeeccch--HHHHHHHHHHhccchHHHHhhHHHHhhhhhhccCccceeeecchhHhhhhHhh--h---------ccc
Confidence 9999999984 6888999999999988877764442 35789999999999999998 4 799
Q ss_pred cccccCCCCCC
Q 025688 234 LIPCAIDQVGS 244 (249)
Q Consensus 234 lVPvg~DQdp~ 244 (249)
.||||+||.+|
T Consensus 158 hVPVGeDQsQH 168 (347)
T KOG2713|consen 158 HVPVGEDQSQH 168 (347)
T ss_pred cccCCccHHHH
Confidence 99999999876
No 24
>KOG2623 consensus Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=4.7e-28 Score=223.81 Aligned_cols=176 Identities=19% Similarity=0.291 Sum_probs=137.4
Q ss_pred hhHHHhhccccccCChhH---HHHHHH-cCCceEEEeccCCCCCCccchhhHHHHhHHHHHHcCCCcEEEE------ecC
Q 025688 58 PHVFLRRGVFFAHRDLND---ILDAYE-KGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQ------LTD 127 (249)
Q Consensus 58 ~~~l~~Rgi~~~~~d~~~---ll~~~e-~~k~~~iYtG~dPSg~sLHlGHlv~~~~l~~lQ~~g~~~v~i~------IaD 127 (249)
+..|..||++ +++-.+. ..+.++ .+-|.++||||||||+||||||++++|.+.|+|.+||.++.++ |||
T Consensus 33 L~~l~aR~l~-~~s~Pet~~~~~~~L~~rglp~~vYcGfDPTA~SLHvGNLl~lm~L~hfqr~Gh~~ialIGgATa~vGD 111 (467)
T KOG2623|consen 33 LTELKARGLF-QTSFPETLSKCSEDLNGRGLPQYVYCGFDPTAESLHVGNLLALMVLIHFQRAGHRPIALIGGATASVGD 111 (467)
T ss_pred HHHHHhcccc-cccCCCccchhhhhhhcCCCCceEEecCCCcHHhhhhcchHHHHHHHHHHHcCCCceEEeccccccccC
Confidence 5678999999 5554443 334444 3448999999999999999999999999999999999999998 999
Q ss_pred hh-hhhccC-CCHHHHHHHHH---HHHHHHHH-------cCCCCCceEEEEcCcCCCcccHHHHHH-HhccCCHHHHHHh
Q 025688 128 DE-KCMWKN-LSVEESQRLAR---ENAKDIIA-------CGFDVTKTFIFSDFDYVGGAFYKNMVK-VAKCVTYNKVVGI 194 (249)
Q Consensus 128 ~~-k~~~r~-l~~e~i~~~~~---eni~~iiA-------~G~dp~kt~i~~ns~~~~~~~~~~~l~-l~k~~tv~~m~~~ 194 (249)
|+ +.++|+ +..+.++.|++ ..++.+.+ +|..-.+-.|+||++|+++..+..|+. +|+|+++++|+++
T Consensus 112 PSGrktER~~l~~d~~~~N~~~I~~ql~~if~n~~~~~~~~~s~g~~~ivnN~dW~~d~~llDFLa~vGrh~RvgsMLar 191 (467)
T KOG2623|consen 112 PSGRKTERGQLAEDTREANSRSITQQLCKIFENHPEYYRDGSSQGKYIIVNNSDWYKDIKLLDFLAEVGRHFRVGSMLAR 191 (467)
T ss_pred CCCCccchhhhhhHHHHHhHHHHHHHHHHHHhcChhhhcCCcccCceeEeechHHhhhchHHHHHHHhchhhhHHHHHHH
Confidence 99 677776 66666666554 22222322 354446889999999999888888887 9999999999998
Q ss_pred hCC------CCCCceeeeechHHhhhccCCcCCCcccCCCCCCCCccccc-CCCC
Q 025688 195 FGF------TGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCA-IDQV 242 (249)
Q Consensus 195 ~gf------~~~~~ig~~~YP~lQaaDil~~~fp~~~~~~~~~~~lVPvg-~DQd 242 (249)
... .+.+|+.||+|.+|||+|++ ||| ++..|-|.+| -||-
T Consensus 192 ~SV~~RLes~~GlSftEFtYQ~lQAYDfy-----~L~---~~~g~~~QlGGsDQw 238 (467)
T KOG2623|consen 192 DSVKSRLESPNGLSFTEFTYQLLQAYDFY-----HLY---ENYGCRFQLGGSDQW 238 (467)
T ss_pred HHHHHhhcCCCCCcHHHHHHHHHHHHhHH-----HHH---HhcCeeEEecccccc
Confidence 654 34689999999999999977 466 2356777775 4553
No 25
>PTZ00348 tyrosyl-tRNA synthetase; Provisional
Probab=99.57 E-value=5.3e-15 Score=147.77 Aligned_cols=117 Identities=11% Similarity=0.127 Sum_probs=101.6
Q ss_pred HHHHcCCCcEEEEecChhhhhccC--CCHHHHHHHHHHHHHHHHHcCCCCCceEEEEcCcCCCc---ccHHHHHHHhccC
Q 025688 112 YLQDAFKVPLVIQLTDDEKCMWKN--LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGG---AFYKNMVKVAKCV 186 (249)
Q Consensus 112 ~lQ~~g~~~v~i~IaD~~k~~~r~--l~~e~i~~~~~eni~~iiA~G~dp~kt~i~~ns~~~~~---~~~~~~l~l~k~~ 186 (249)
.|+.+-++.++|++||||++++++ .++++|++.++.|++.|.|+|+|++ +.|++.||.... .||.+++++++++
T Consensus 401 ~~~~~~g~~~~illADwhA~lN~k~~G~l~~I~~~~~y~~~~~~a~G~~~~-v~fv~~sd~~~~~~~~Yw~~v~~ia~~~ 479 (682)
T PTZ00348 401 FIAAHSDGTVTLVLPDWSAVASDEITGEEKDISAALEVNCALLKAYGLPSE-VKIVRENEVILGNPNDFWVSVIGIARKN 479 (682)
T ss_pred HHHHcCCCeEEEEeehhHHHhcCccCCCHHHHHHHHHHHHHHHHHcCCCCC-cEEEEchHhhhcCchhHHHHHHHHHHhc
Confidence 366666689999999999999877 8999999999999999999999998 999999998532 8999999999999
Q ss_pred CHHHHHHhhCCCCCCceeeeechHHhhhccCCcCCCcccCCCCCCCCcccccCCC
Q 025688 187 TYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQ 241 (249)
Q Consensus 187 tv~~m~~~~gf~~~~~ig~~~YP~lQaaDil~~~fp~~~~~~~~~~~lVPvg~DQ 241 (249)
|++++++..| .+..+++++.||+||++||+. . ...+.-.|.||
T Consensus 480 tl~r~~r~~g-~~~~~~s~~iYP~MQ~~Di~~------L-----~~di~~gG~DQ 522 (682)
T PTZ00348 480 LLSHVEELYG-GELRNAGQVIAALMRVATALM------L-----SASHVISTSLD 522 (682)
T ss_pred cHHHHHHHhc-CCcccHHHHHHHHHHHHHHHh------c-----CCCeeecChhH
Confidence 9999999997 455689999999999999995 2 34555566666
No 26
>KOG2144 consensus Tyrosyl-tRNA synthetase, cytoplasmic [Translation, ribosomal structure and biogenesis]
Probab=99.46 E-value=8.2e-14 Score=125.54 Aligned_cols=155 Identities=16% Similarity=0.161 Sum_probs=115.4
Q ss_pred HHHhhccccccCChhHHHHHHHcCCceEEEeccCCCCCCccchhhHHHHhHHHHHHcCCCcEEEEecChhhhhccC-CCH
Q 025688 60 VFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKN-LSV 138 (249)
Q Consensus 60 ~l~~Rgi~~~~~d~~~ll~~~e~~k~~~iYtG~dPSg~sLHlGHlv~~~~l~~lQ~~g~~~v~i~IaD~~k~~~r~-l~~ 138 (249)
.|.+|++= .+-.+++|.+.++. ....+|-|+.||| .+|+|-.++++++..|-++| |.|.|++||+|+++.+. ..+
T Consensus 11 ~lItrnlq-E~lgee~lk~iL~e-r~l~~YwGtaptG-rpHiay~vpm~kiadflkAG-C~VtIl~AD~hA~LdNmkap~ 86 (360)
T KOG2144|consen 11 KLITRNLQ-EVLGEEELKNILAE-RALKCYWGTAPTG-RPHIAYFVPMMKIADFLKAG-CEVTILFADLHAFLDNMKAPD 86 (360)
T ss_pred HHHHHHHH-HHhCHHHHHHHHhc-cCceeeecCCCCC-CcceeeeeehhHHHHHHhcC-CeEEEEehHHHHHHhcccchH
Confidence 45666554 45577888888884 7889999999999 99999999999999999999 99999999999998766 677
Q ss_pred HHHHHHHHHHHHHHHH----cCCCCCceEEEEcCcCCCcccHHHH-HHHhccCCHHHHHHh--hCCC--CCCceeeeech
Q 025688 139 EESQRLARENAKDIIA----CGFDVTKTFIFSDFDYVGGAFYKNM-VKVAKCVTYNKVVGI--FGFT--GEDHIGKVSFP 209 (249)
Q Consensus 139 e~i~~~~~eni~~iiA----~G~dp~kt~i~~ns~~~~~~~~~~~-l~l~k~~tv~~m~~~--~gf~--~~~~ig~~~YP 209 (249)
+.+...+.++-+.|.+ .+.+-++..+...|++-...+|.+. .|+++.+|-..++.. .+.+ ++..++.+.||
T Consensus 87 e~~~~rv~yYe~~Ik~~l~~~nv~lEkL~fv~gs~yq~sk~ytld~~rl~~~~~~hdak~agaevvkqve~plls~llYP 166 (360)
T KOG2144|consen 87 ELVIRRVGYYEKEIKAALGSINVPLEKLKFVKGSNYQLSKYYTLDMYRLSSNVTQHDAKKAGAEVVKQVENPLLSGLLYP 166 (360)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCcHHHHhhhcccccccCccchhhHHHHHhhccHhHHHHhhhhHHHhhcchhhhhhhhh
Confidence 7777666665555544 2444477777777777334555544 456666665555442 2332 35677899999
Q ss_pred HHhhhccCC
Q 025688 210 PVQAVPSFP 218 (249)
Q Consensus 210 ~lQaaDil~ 218 (249)
.|||+|++.
T Consensus 167 ~MQalDe~~ 175 (360)
T KOG2144|consen 167 GMQALDEFY 175 (360)
T ss_pred hHHHhhHHH
Confidence 999999994
No 27
>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase. Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=98.19 E-value=5e-06 Score=74.26 Aligned_cols=114 Identities=14% Similarity=0.204 Sum_probs=75.3
Q ss_pred CCCCCCccchhhHHHHhH-HHHHHcCCCcEEEEecChhhhhccCCCHHHHHHHHHHHHHHHHHcCCCCCceE-------E
Q 025688 93 GPSSEALHLGHLVPFMFT-KYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTF-------I 164 (249)
Q Consensus 93 dPSg~sLHlGHlv~~~~l-~~lQ~~g~~~v~i~IaD~~k~~~r~l~~e~i~~~~~eni~~iiA~G~dp~kt~-------i 164 (249)
.||| .|||||+..++.. .+.+..+ ..+++-|.|.- ..-+.+ ++.....+++..+|+++++.. +
T Consensus 9 sPtG-~LHlG~~~~al~n~l~ar~~~-G~~ilRieDtd----~~r~~~---~~~~~i~~dL~wlGl~~d~~~~~~g~~~~ 79 (239)
T cd00808 9 SPTG-FLHIGGARTALFNYLFARKHG-GKFILRIEDTD----QERSVP---EAEEAILEALKWLGLDWDEGPDVGGPYGP 79 (239)
T ss_pred CCCC-cccHHHHHHHHHHHHHHHHcC-CeEEEEECcCC----CCCCch---HHHHHHHHHHHHcCCCCCcCCccCCCCCC
Confidence 5898 9999999999863 3455555 46666688832 111222 222255667777899998732 7
Q ss_pred EEcCcCCCcccHHHHH-HHhccCCHHHHHHhhCCCCCCceeeeechHHhhhccCCcCCCcccCCCCCCCCcccccCCCCC
Q 025688 165 FSDFDYVGGAFYKNMV-KVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQVG 243 (249)
Q Consensus 165 ~~ns~~~~~~~~~~~l-~l~k~~tv~~m~~~~gf~~~~~ig~~~YP~lQaaDil~~~fp~~~~~~~~~~~lVPvg~DQdp 243 (249)
+.||+-. ..|..++ ++- + .| =|..+|++.+++|... . .-+.|++|.|+.+
T Consensus 80 ~~QS~r~--~~y~~~~~~L~---------~-~g------dg~ptY~~a~~vDD~~------~-----~ithViRG~D~~~ 130 (239)
T cd00808 80 YRQSERL--EIYRKYAEKLL---------E-KG------DGFPTYHLANVVDDHL------M-----GITHVIRGEEHLS 130 (239)
T ss_pred EeeeCCH--HHHHHHHHHHH---------H-cC------CCCcccccHHHHhHHh------c-----CCCEEEEChhhhh
Confidence 8888854 3333332 221 1 11 2789999999999886 2 5799999999875
Q ss_pred C
Q 025688 244 S 244 (249)
Q Consensus 244 ~ 244 (249)
+
T Consensus 131 ~ 131 (239)
T cd00808 131 S 131 (239)
T ss_pred C
Confidence 4
No 28
>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase. Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=98.13 E-value=3.7e-06 Score=68.43 Aligned_cols=41 Identities=27% Similarity=0.386 Sum_probs=29.1
Q ss_pred EEeccCCCCCCccchhhHHHHh----HHHHHHcCCCcEEEEecChh
Q 025688 88 LYTGRGPSSEALHLGHLVPFMF----TKYLQDAFKVPLVIQLTDDE 129 (249)
Q Consensus 88 iYtG~dPSg~sLHlGHlv~~~~----l~~lQ~~g~~~v~i~IaD~~ 129 (249)
.++|..||| ++||||+..++. .++++..|....++...|++
T Consensus 2 ~~~~p~~~~-~~HlGh~~~~~~~d~~~r~lr~~G~~v~~~~~~dd~ 46 (143)
T cd00802 2 TFSGITPNG-YLHIGHLRTIVTFDFLAQAYRKLGYKVRCIALIDDA 46 (143)
T ss_pred EecCCCCCC-CccHhHHHHHHHHHHHHHHHHHcCCCeEEEeeeCCC
Confidence 589999999 999999887753 34566667555555544444
No 29
>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase. Class I lysyl tRNA synthetase (LysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity.
Probab=97.11 E-value=0.0053 Score=57.89 Aligned_cols=109 Identities=17% Similarity=0.260 Sum_probs=66.7
Q ss_pred CCceEEEeccCCCCCCccchhhHHHH---h-HHHHHHcCCCcEEEEecChhhhhcc-------------CC---------
Q 025688 83 GEKFYLYTGRGPSSEALHLGHLVPFM---F-TKYLQDAFKVPLVIQLTDDEKCMWK-------------NL--------- 136 (249)
Q Consensus 83 ~k~~~iYtG~dPSg~sLHlGHlv~~~---~-l~~lQ~~g~~~v~i~IaD~~k~~~r-------------~l--------- 136 (249)
++++.+=||+-||| .+||||+...+ . .+.+...|....+++.+|.|.-+++ ..
T Consensus 18 ~~~~~v~tgi~psG-~~HIG~~~e~i~~D~i~R~lr~~G~~v~~v~~~Dd~d~lrKvp~~l~~~~~~~~G~pi~~ip~p~ 96 (353)
T cd00674 18 KEKYVVASGISPSG-HIHIGNFREVITADLVARALRDLGFEVRLIYSWDDYDRLRKVPPNVPESYEQYIGMPLSSVPDPF 96 (353)
T ss_pred CCeEEEecCCCCCC-CcccCccHHHHHHHHHHHHHHHcCCCEEEEEEEcCCCcccccccchhhHHHHhcCccchhchhhc
Confidence 45788889999998 99999977543 2 3456667866677779999932222 01
Q ss_pred --CHHHHHHHHHHHHHHHHHcCCCCCceEEEEcCcCCCc-ccHHHHHH-HhccCCHHHHHHhh
Q 025688 137 --SVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGG-AFYKNMVK-VAKCVTYNKVVGIF 195 (249)
Q Consensus 137 --~~e~i~~~~~eni~~iiA~G~dp~kt~i~~ns~~~~~-~~~~~~l~-l~k~~tv~~m~~~~ 195 (249)
..+-+.++.....+.+-.+|++.+ ++++++...+ .+-+.+.. +.+.=.+.+++..+
T Consensus 97 g~~~~~~d~~~~~f~~~l~~lgi~~d---~~~~T~~y~~g~~~~~i~~~L~~~~~I~~i~~~~ 156 (353)
T cd00674 97 GCCESYAEHFERPFEESLEKLGIEVE---FISQSQMYKSGLYDENILIALEKRDEIMAILNEY 156 (353)
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCeee---eeecCCchhhchHHHHHHHHHHHCChHHHHHHHh
Confidence 112233333333444555888654 7788887654 33344333 66666666665543
No 30
>PRK00750 lysK lysyl-tRNA synthetase; Reviewed
Probab=96.97 E-value=0.0059 Score=60.19 Aligned_cols=116 Identities=17% Similarity=0.206 Sum_probs=71.3
Q ss_pred HHHHHHcCCceEEEeccCCCCCCccchhhHHHH----hHHHHHHcCCCcEEEEecChhhhhccC---CCH-HH-------
Q 025688 76 ILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFM----FTKYLQDAFKVPLVIQLTDDEKCMWKN---LSV-EE------- 140 (249)
Q Consensus 76 ll~~~e~~k~~~iYtG~dPSg~sLHlGHlv~~~----~l~~lQ~~g~~~v~i~IaD~~k~~~r~---l~~-e~------- 140 (249)
|++...++.++.+=||+.||| .+||||+-..+ ..+.+...|+...+|..+|+|.-+++. +.. ++
T Consensus 15 ~~~r~~~~~~~~~~~g~~psG-~~HiG~~~e~~~~d~v~r~lr~~G~~v~~i~~~Dd~d~lRkvp~~~p~~~~~~~~~G~ 93 (510)
T PRK00750 15 IIKRLGKKPPVVVETGIGPSG-LPHIGNFREVARTDMVRRALRDLGIKTRLIFFSDDMDGLRKVPDNVPNQEMLEEYLGK 93 (510)
T ss_pred HHHhcCCCCcEEEEeCCCCCC-CcccccccchhhHHHHHHHHHHcCCcEEEEEEEecCCcccccCCCCCchHHHHHhcCc
Confidence 333333334589999999999 99999976443 345688888777778899999533221 111 11
Q ss_pred -----------HHHHHHHHHHHHH----HcCCCCCceEEEEcCcCCCcccHHHHHH--HhccCCHHHHHHhh
Q 025688 141 -----------SQRLARENAKDII----ACGFDVTKTFIFSDFDYVGGAFYKNMVK--VAKCVTYNKVVGIF 195 (249)
Q Consensus 141 -----------i~~~~~eni~~ii----A~G~dp~kt~i~~ns~~~~~~~~~~~l~--l~k~~tv~~m~~~~ 195 (249)
...++..+.+.+. .+|++.+ ++.+++...+-.|...++ +.++=.+.+++..+
T Consensus 94 pl~~~p~p~G~~~~~~~~~~~~~~~~~~~~gi~~d---~~~~t~~y~~g~~~~~i~~~l~~~~~i~~il~~~ 162 (510)
T PRK00750 94 PLTEIPDPFGCHESYAEHFNAPLREFLDRFGIEYE---FISATECYKSGRYDEAILTALENRDEIMEILLPY 162 (510)
T ss_pred ccccCCCCCCCchHHHHHHHHHHHHHHHHcCCceE---EEehhhhhccCchHHHHHHHHHhHHHHHHHHHHh
Confidence 2445554444433 4788654 778888766534444443 66555566555544
No 31
>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete. This model represents the lysyl-tRNA synthetases that are class I amino-acyl tRNA synthetases. It includes archaeal and spirochete examples of the enzyme. All other known examples are class IIc amino-acyl tRNA synthetases and seem to form a separate orthologous set.
Probab=96.67 E-value=0.007 Score=59.76 Aligned_cols=108 Identities=14% Similarity=0.228 Sum_probs=69.8
Q ss_pred CceEEEeccCCCCCCccchhhHHHH----hHHHHHHcCCCcEEEEecChhhhhccC---CC-----------------HH
Q 025688 84 EKFYLYTGRGPSSEALHLGHLVPFM----FTKYLQDAFKVPLVIQLTDDEKCMWKN---LS-----------------VE 139 (249)
Q Consensus 84 k~~~iYtG~dPSg~sLHlGHlv~~~----~l~~lQ~~g~~~v~i~IaD~~k~~~r~---l~-----------------~e 139 (249)
+++.+=||+.||| .+||||+...+ ..+.+...|+...+|+.+|++.=+++. +. ..
T Consensus 18 ~~~~~~tg~~psG-~~HiG~~~e~~~~d~v~r~~r~~g~~~~~i~~~Dd~D~lRKvp~~~p~~~~~ylG~Pl~~vpdp~g 96 (515)
T TIGR00467 18 NLYTVASGITPSG-HIHIGNFREVITADAIARALRDSGSEARFIYIADNYDPLRKVYPFLPEELETYLGMPLTRIPDPEG 96 (515)
T ss_pred CeEEEecCCCCCC-CccccchhhhhHHHHHHHHHHHcCCCEEEEEEEcCCcccccccccccHHHHHhCCCcceecCCCCC
Confidence 5799999999999 99999987554 345688888777888899998222110 11 01
Q ss_pred HHHHHHHHHHHHHH----HcCCCCCceEEEEcCcCCCcccHHHHHH--HhccCCHHHHHHhh
Q 025688 140 ESQRLARENAKDII----ACGFDVTKTFIFSDFDYVGGAFYKNMVK--VAKCVTYNKVVGIF 195 (249)
Q Consensus 140 ~i~~~~~eni~~ii----A~G~dp~kt~i~~ns~~~~~~~~~~~l~--l~k~~tv~~m~~~~ 195 (249)
....++..+.+.+. .+|++ ..++++++.+++-.|...++ +.++-.+.+++..+
T Consensus 97 ~~~s~~~h~~~~~~~~l~~~gi~---~e~~s~te~Y~sG~~~~~i~~~L~~~~~I~~il~~~ 155 (515)
T TIGR00467 97 CKTSYAEHFLIPFLESLPVLGIN---PEFIRASKQYTSGLYASQIKIALDHRKEISEILNEY 155 (515)
T ss_pred CcHHHHHHHHHHHHHHHHHcCCe---EEEEEHHHhhhcCChHHHHHHHHHhHHHHHHHHHHh
Confidence 12445544444433 47884 67899999987645555554 55555555555443
No 32
>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis]
Probab=95.56 E-value=0.091 Score=51.66 Aligned_cols=107 Identities=19% Similarity=0.301 Sum_probs=71.8
Q ss_pred CceEEEeccCCCCCCccchhhHHH----HhHHHHHHcCCCcEEEEecChhhhhcc---CCC-HHH---------------
Q 025688 84 EKFYLYTGRGPSSEALHLGHLVPF----MFTKYLQDAFKVPLVIQLTDDEKCMWK---NLS-VEE--------------- 140 (249)
Q Consensus 84 k~~~iYtG~dPSg~sLHlGHlv~~----~~l~~lQ~~g~~~v~i~IaD~~k~~~r---~l~-~e~--------------- 140 (249)
+...+=||+.||| .+||||+-=+ +..+-|-+.|+..-+|.++|+..=+++ ++. .+.
T Consensus 19 ~~~~v~tGisPSG-~~HIGn~rEv~t~d~V~ralr~~g~~~r~I~~~DD~D~lRkvp~~lp~~~~~e~Ylg~Plt~IPdP 97 (521)
T COG1384 19 DEYVVATGISPSG-LIHIGNFREVLTADAVRRALRDRGDEVRLIYISDDYDPLRKVPRNLPDPEELEQYLGMPLTEIPDP 97 (521)
T ss_pred CcEEEecCcCCCC-CcccccHHHHHHHHHHHHHHHHcCCceEEEEEccCCcccccCCCCCCChHHHHHHcCCccccCCCC
Confidence 5789999999999 9999996533 334568888987777889988843332 232 233
Q ss_pred ---HHHHHHHHHHHHHH----cCCCCCceEEEEcCcCCCcccHHHHHH--HhccCCHHHHHHh
Q 025688 141 ---SQRLARENAKDIIA----CGFDVTKTFIFSDFDYVGGAFYKNMVK--VAKCVTYNKVVGI 194 (249)
Q Consensus 141 ---i~~~~~eni~~iiA----~G~dp~kt~i~~ns~~~~~~~~~~~l~--l~k~~tv~~m~~~ 194 (249)
...++..+.+.+.+ +|++ ..++++++.+++-.|...++ +.++--+.+++..
T Consensus 98 ~G~~~Sya~hf~~~f~~~l~~~Gi~---~E~~s~se~Yk~G~~~~~i~~ale~rdeI~~il~~ 157 (521)
T COG1384 98 FGCCDSYAEHFLRPFEEFLDEFGIE---VEFVSATELYKSGLYDEAIRIALERRDEIMEILNE 157 (521)
T ss_pred ccccchHHHHHHHHHHHHHHhcCCc---eEEEEhHHhhhcccHHHHHHHHHhhHHHHHHHHHH
Confidence 33455555555554 6875 56899999887777777776 5555445555444
No 33
>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed
Probab=95.26 E-value=0.069 Score=49.35 Aligned_cols=70 Identities=17% Similarity=0.130 Sum_probs=44.8
Q ss_pred CCCCCCccchhhHHHHhHHHHHHcCCCcEEEEecChhhhhccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEEcCcCC
Q 025688 93 GPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYV 171 (249)
Q Consensus 93 dPSg~sLHlGHlv~~~~l~~lQ~~g~~~v~i~IaD~~k~~~r~l~~e~i~~~~~eni~~iiA~G~dp~kt~i~~ns~~~ 171 (249)
-||| .|||||+..++..-.+.++.+...++-|-|.-.- | -.. ++....++++..+|++.+.- ++.||+-.
T Consensus 13 SPTG-~LHlG~~rtAL~n~l~Ar~~~G~~iLRiEDtD~~--R-~~~----~~~~~I~~dL~wlGl~wDe~-~~~QS~r~ 82 (299)
T PRK05710 13 SPSG-PLHFGSLVAALGSWLDARAHGGRWLLRIEDIDPP--R-EVP----GAADAILADLEWLGLHWDGP-VLYQSQRH 82 (299)
T ss_pred CCCC-cccHHHHHHHHHHHHHHHHcCCEEEEEECcCCCC--c-cch----HHHHHHHHHHHHCCCCCCCC-ceEeeccH
Confidence 5898 9999999999864333333335777778774321 1 112 22225667788899998753 45588864
No 34
>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase. Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The discriminating form of GluRS differs from GlnRS and the non-discriminating form of GluRS in their C-terminal anti-codon bind
Probab=95.25 E-value=0.083 Score=47.05 Aligned_cols=70 Identities=17% Similarity=0.295 Sum_probs=44.1
Q ss_pred CCCCCCccchhhHHHHhHHHHHHcCCCcEEEEecChhhhhccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEEcCcCC
Q 025688 93 GPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYV 171 (249)
Q Consensus 93 dPSg~sLHlGHlv~~~~l~~lQ~~g~~~v~i~IaD~~k~~~r~l~~e~i~~~~~eni~~iiA~G~dp~kt~i~~ns~~~ 171 (249)
.||| .|||||+..++..-.+.++.+..+++-|=|.-.- | -..+-.. ...+++..+|++.+.- ++.||+-.
T Consensus 9 sPtG-~lHlG~~r~al~n~l~Ar~~~G~~iLRieDtD~~--R-~~~~~~~----~I~~dL~wlGl~wd~~-~~~QS~r~ 78 (230)
T cd00418 9 SPTG-YLHIGHARTALFNFAFARKYGGKFILRIEDTDPE--R-SRPEYVE----SILEDLKWLGLDWDEG-PYRQSDRF 78 (230)
T ss_pred CCCC-cccHHHHHHHHHHHHHHHHcCCeEEEEeCcCCCC--C-CChHHHH----HHHHHHHHcCCCCCCC-eeehhcCH
Confidence 5898 9999999998864333343335677777664421 1 1122222 5556677789988753 67788865
No 35
>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase. Non-discriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Glu to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=95.20 E-value=0.065 Score=48.03 Aligned_cols=77 Identities=14% Similarity=0.175 Sum_probs=49.7
Q ss_pred EEEeccCCCCCCccchhhHHHHhHHHHHHcCCCcEEEEecChhhhhccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEE
Q 025688 87 YLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFS 166 (249)
Q Consensus 87 ~iYtG~dPSg~sLHlGHlv~~~~l~~lQ~~g~~~v~i~IaD~~k~~~r~l~~e~i~~~~~eni~~iiA~G~dp~kt~i~~ 166 (249)
+.=+|-.||| .|||||+..++..--+.+..+..+++-|.|--.... -..++.. ....+++..+|++++ ..+.
T Consensus 3 ~~RfaPsPtG-~lHiG~~rtal~~~l~Ar~~~G~~ilRieDtD~~r~--~~~~~~~---~~i~~dL~wLGl~~d--~~~~ 74 (240)
T cd09287 3 VMRFAPNPNG-PLHLGHARAAILNGEYAKMYGGKFILRFDDTDPRTK--RPDPEAY---DMIPEDLEWLGVKWD--EVVI 74 (240)
T ss_pred eEeCCCCCCC-CccHHHHHHHHHHHHHHHHcCCEEEEeeCcCCCCcc--cchHHHH---HHHHHHHHHcCCCCC--Cccc
Confidence 4456788998 999999998886433444444567777888652110 0122222 245567777999887 4678
Q ss_pred cCcCC
Q 025688 167 DFDYV 171 (249)
Q Consensus 167 ns~~~ 171 (249)
||+-+
T Consensus 75 qS~r~ 79 (240)
T cd09287 75 ASDRI 79 (240)
T ss_pred hhccH
Confidence 88865
No 36
>PRK04156 gltX glutamyl-tRNA synthetase; Provisional
Probab=95.04 E-value=0.086 Score=52.72 Aligned_cols=89 Identities=16% Similarity=0.225 Sum_probs=58.1
Q ss_pred CCceEEEeccCCCCCCccchhhHHHHhHHHHHHcCCCcEEEEecChhhhhccCCCHHHHHHHHHHHHHHHHHcCCCCCce
Q 025688 83 GEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKT 162 (249)
Q Consensus 83 ~k~~~iYtG~dPSg~sLHlGHlv~~~~l~~lQ~~g~~~v~i~IaD~~k~~~r~l~~e~i~~~~~eni~~iiA~G~dp~kt 162 (249)
++++..+.+=.||| .|||||+..++..-.+.+..+..+++-|-|--..+.| ...+-. .....++..+|++++.
T Consensus 99 ~g~V~tRFaPsPtG-~LHIGharaalln~~~Ar~~~G~~iLRidDTDpk~~R-~~~e~~----~~I~edL~wLGl~wD~- 171 (567)
T PRK04156 99 KGKVVMRFAPNPSG-PLHLGHARAAILNDEYAKMYGGKFILRFEDTDPRTKR-PDPEAY----DMILEDLKWLGVKWDE- 171 (567)
T ss_pred CCeEEEEeCCCCCC-CccHHHHHHHHHHHHHHHHcCCEEEEeEccCCCCccc-chHHHH----HHHHHHHHHcCCCCCC-
Confidence 44688899999999 9999999998864344454556677778776532122 122222 2455667778999874
Q ss_pred EEEEcCcCCCcccHHHHH
Q 025688 163 FIFSDFDYVGGAFYKNMV 180 (249)
Q Consensus 163 ~i~~ns~~~~~~~~~~~l 180 (249)
++.||+.+. .++..+-
T Consensus 172 -~~~qSdr~~-~y~~~a~ 187 (567)
T PRK04156 172 -VVIQSDRLE-IYYEYAR 187 (567)
T ss_pred -ccCcccCHH-HHHHHHH
Confidence 578888763 4544443
No 37
>PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Lysyl-tRNA synthetase (6.1.1.6 from EC) is an alpha 2 homodimer that belong to both class I and class II. In eubacteria and eukaryota lysyl-tRNA synthetases belong to class II in the same family as aspartyl tRNA synthetase. The class Ic lysyl-tRNA synthetase family is present in archaea and in a number of bacterial groups that include the alphaproteobacteria and spirochaetes[]. A refined crystal structures shows that the active site of LysU is shaped to position the substrates for the nucleophilic attack of the lysine carboxylate on the ATP alpha-phosphate. No residues are directly involved in catalysis, but a number of highly conserved amino acids and three metal ions coordinate the substrates and stabilise the pentavalent transition state. A loop close to the catalytic pocket, disordered in the lysine-bound structure, becomes ordered upon adenine binding [].; GO: 0000166 nucleotide binding, 0004824 lysine-tRNA ligase activity, 0005524 ATP binding, 0006430 lysyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IRX_A.
Probab=94.89 E-value=0.019 Score=54.20 Aligned_cols=109 Identities=17% Similarity=0.243 Sum_probs=59.6
Q ss_pred CCceEEEeccCCCCCCccchhhHHHH----hHHHHHHcCCCcEEEEecChhhhhcc----------------CC----C-
Q 025688 83 GEKFYLYTGRGPSSEALHLGHLVPFM----FTKYLQDAFKVPLVIQLTDDEKCMWK----------------NL----S- 137 (249)
Q Consensus 83 ~k~~~iYtG~dPSg~sLHlGHlv~~~----~l~~lQ~~g~~~v~i~IaD~~k~~~r----------------~l----~- 137 (249)
++++.+=||+.||| ..||||+--++ ..+-|++.|...-+|+.+|+---+++ ++ +
T Consensus 22 ~~~~v~~sG~sPSG-~~HIGn~rEv~~~~~V~~al~~~g~~~r~i~~~DD~D~lRKvP~~~p~~~~~~ylg~Plt~VPdP 100 (360)
T PF01921_consen 22 KEPYVFASGISPSG-LPHIGNFREVLRADMVARALRDRGKDVRLIYFSDDMDPLRKVPPNVPNPELEKYLGKPLTRVPDP 100 (360)
T ss_dssp -SEEEEEEEE--SS----HHHHHHHHHHHHHHHHHHTTT-EEEEEEEE-TTSB-----TTS-CC-CCCCTTSBTTTSB-T
T ss_pred CccEEEecCCCCCC-CcccccccchhhHHHHHHHHHHcCCCEEEEEEeecCCcccCCCCCCChHHHHHhcCCccccCCCC
Confidence 57899999999999 99999976443 34568888876666677776521111 11 0
Q ss_pred HHHHHHHHHHHHHHHHH----cCCCCCceEEEEcCcCCCcccHHHHHH--HhccCCHHHHHHhh
Q 025688 138 VEESQRLARENAKDIIA----CGFDVTKTFIFSDFDYVGGAFYKNMVK--VAKCVTYNKVVGIF 195 (249)
Q Consensus 138 ~e~i~~~~~eni~~iiA----~G~dp~kt~i~~ns~~~~~~~~~~~l~--l~k~~tv~~m~~~~ 195 (249)
......++..|.+.+.+ +|++ ..++++++.+++-.|...++ +.++-.+.+++..+
T Consensus 101 ~G~~~SyaeH~~~~~~~~L~~~gie---~e~~s~te~Y~sG~y~~~i~~aL~~~~~I~~Il~~~ 161 (360)
T PF01921_consen 101 FGCHESYAEHFNAPFEEFLDEFGIE---YEFISQTEMYRSGRYDEQIRTALENRDEIREILNEY 161 (360)
T ss_dssp TSSSSCHHHHHHHHHHHHHHTTT------EEEECCCCCCTTTTHHHHCHHHHTHHHHHHHHHHH
T ss_pred CCCCccHHHHHHHHHHHHHHHcCCc---eEEEeHHHhhhCCchHHHHHHHHHhHHHHHHHHHHh
Confidence 01122345444444333 7885 47899999987655555554 66666666666554
No 38
>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase. Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=94.87 E-value=0.079 Score=47.43 Aligned_cols=69 Identities=16% Similarity=0.192 Sum_probs=43.7
Q ss_pred CCCCCCccchhhHHHHhHHHHHHcCCCcEEEEecChhhhhccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEEcCcCC
Q 025688 93 GPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYV 171 (249)
Q Consensus 93 dPSg~sLHlGHlv~~~~l~~lQ~~g~~~v~i~IaD~~k~~~r~l~~e~i~~~~~eni~~iiA~G~dp~kt~i~~ns~~~ 171 (249)
.||| .||+||+..++..-.+.+..+...++-|=|.-.. | -.. .......+++..+|++.+ .++.||+-.
T Consensus 9 sPtG-~lHlG~~~~al~~~l~Ar~~~G~~iLRieDtD~~--R-~~~----~~~~~I~~dL~wlGl~wD--~~~~QS~r~ 77 (238)
T cd00807 9 EPNG-YLHIGHAKAILLNFGYAKKYGGRCNLRFDDTNPE--K-EEE----EYVDSIKEDVKWLGIKPY--KVTYASDYF 77 (238)
T ss_pred CCCC-cccHHHHHHHHHHHHHHHHhCCEEEEEecCCCCc--c-cch----HHHHHHHHHHHHcCCCCC--CceecccCH
Confidence 5898 9999999999875444444445666666554321 1 111 122244566677899988 467788864
No 39
>PRK14895 gltX glutamyl-tRNA synthetase; Provisional
Probab=94.33 E-value=0.17 Score=50.06 Aligned_cols=75 Identities=16% Similarity=0.211 Sum_probs=48.8
Q ss_pred EEeccCCC--CCCccchhhHHHHhHHHHHHcCCCcEEEEecChhhhhccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEE
Q 025688 88 LYTGRGPS--SEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIF 165 (249)
Q Consensus 88 iYtG~dPS--g~sLHlGHlv~~~~l~~lQ~~g~~~v~i~IaD~~k~~~r~l~~e~i~~~~~eni~~iiA~G~dp~kt~i~ 165 (249)
+.|.|-|| | .|||||+..+++.-.+.+..+..+++-|-|--.- | ...+-++ ..+.++..+|++++.- .+
T Consensus 5 vrtRFAPSPTG-~lHiG~artAL~n~l~Ar~~gG~fiLRIEDTD~~--R-~~~~~~~----~i~~~L~WLGl~wDe~-py 75 (513)
T PRK14895 5 VITRFAPSPTG-FLHIGSARTALFNYLFARHHNGKFLLRIEDTDKE--R-STKEAVE----AIFSGLKWLGLDWNGE-VI 75 (513)
T ss_pred eeEeeCCCCCC-CccHHHHHHHHHHHHHHHHcCCEEEEEECCCCcc--c-cChHHHH----HHHHHHHHcCCCCCCC-ce
Confidence 45677666 8 9999999999875445455556777878776421 1 1222222 4556667789998632 57
Q ss_pred EcCcCC
Q 025688 166 SDFDYV 171 (249)
Q Consensus 166 ~ns~~~ 171 (249)
.||+-.
T Consensus 76 ~QSeR~ 81 (513)
T PRK14895 76 FQSKRN 81 (513)
T ss_pred eEeCcH
Confidence 788865
No 40
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated
Probab=93.85 E-value=0.22 Score=48.47 Aligned_cols=73 Identities=23% Similarity=0.272 Sum_probs=45.1
Q ss_pred CceEEE-eccCCCCCCccchhhHHHH---hHH-HHHHcCCCcEEEE--ecChh-hhhc----cCCCHHHH-HHHHHHHHH
Q 025688 84 EKFYLY-TGRGPSSEALHLGHLVPFM---FTK-YLQDAFKVPLVIQ--LTDDE-KCMW----KNLSVEES-QRLARENAK 150 (249)
Q Consensus 84 k~~~iY-tG~dPSg~sLHlGHlv~~~---~l~-~lQ~~g~~~v~i~--IaD~~-k~~~----r~l~~e~i-~~~~~eni~ 150 (249)
+.+.+| ||--|.+ .+||||+.+.. .++ ++...| ..|..+ ++|-. +... ...+++++ .++..+..+
T Consensus 22 ~~v~~yvcgPtvy~-~~HiGHar~~v~~Dvl~R~lr~~G-~~V~~v~~~tD~ddki~~~A~~~g~~~~e~~~~~~~~f~~ 99 (463)
T PRK00260 22 GKVKMYVCGPTVYD-YAHIGHARSFVVFDVLRRYLRYLG-YKVTYVRNITDIDDKIIKRANEEGESIKELTERYIAAFHE 99 (463)
T ss_pred CcceEEEeCCccCC-CcccccchhHHHHHHHHHHHHhcC-CceEEeecCCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 456777 9999998 99999976543 344 455555 555555 33332 4322 12555544 445556677
Q ss_pred HHHHcCCC
Q 025688 151 DIIACGFD 158 (249)
Q Consensus 151 ~iiA~G~d 158 (249)
++.++|+.
T Consensus 100 ~~~~Lgi~ 107 (463)
T PRK00260 100 DMDALNVL 107 (463)
T ss_pred HHHHcCCC
Confidence 88889983
No 41
>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase. This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid.
Probab=93.80 E-value=0.26 Score=45.00 Aligned_cols=71 Identities=15% Similarity=0.172 Sum_probs=43.5
Q ss_pred CCCCCCccchhhHHHHhHHHHHHcCCCcEEEEecChhhhhccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEEcCcCCC
Q 025688 93 GPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVG 172 (249)
Q Consensus 93 dPSg~sLHlGHlv~~~~l~~lQ~~g~~~v~i~IaD~~k~~~r~l~~e~i~~~~~eni~~iiA~G~dp~kt~i~~ns~~~~ 172 (249)
-||| .|||||+..++..-.+.+..+..+++-|=|--.. | -..+-.. ....++.-+|++.++- .+.||+-++
T Consensus 8 SPtG-~lHiG~~rtAL~n~l~Ar~~gG~~iLRiEDtD~~--R-~~~~~~~----~I~~dL~wLGl~wDe~-~~~QS~r~~ 78 (272)
T TIGR03838 8 SPSG-PLHFGSLVAALGSYLDARAHGGRWLVRIEDLDPP--R-EVPGAAD----DILRTLEAYGLHWDGE-VVYQSQRHA 78 (272)
T ss_pred CCCC-cccHHHHHHHHHHHHHHHHhCCEEEEEeCcCCCC--C-CChHHHH----HHHHHHHHcCCCCCCC-eeeeeCCHH
Confidence 4898 9999999999874334444445677777664421 1 1122222 3445556689988753 467888753
No 42
>TIGR00463 gltX_arch glutamyl-tRNA synthetase, archaeal and eukaryotic family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the eukaryotic cytosolic and archaeal forms of the enzyme. In some eukaryotes, the glutamyl-tRNA synthetase is part of a longer, multifunctional aminoacyl-tRNA ligase. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu).
Probab=93.62 E-value=0.21 Score=50.00 Aligned_cols=145 Identities=14% Similarity=0.250 Sum_probs=75.8
Q ss_pred hcccCcccccCCccCCCcccHHHHHHHhCCCCCCHHHHHHHHHhcCCChhHHHhhccccccCChhHHHHHHHcC--CceE
Q 025688 10 EEEREQVVSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKG--EKFY 87 (249)
Q Consensus 10 ~~~~~~~v~pw~v~~~~~~dy~kl~~~fg~~~i~~~~~~r~~~~~~~~~~~l~~Rgi~~~~~d~~~ll~~~e~~--k~~~ 87 (249)
.+..+.+.+.|++.. -..+.+++..... .+++.+++++.. +. .+ ....+...+.+ +.+. ++++
T Consensus 31 ~~~p~~~~~~~~~~~----~~~~~v~~v~~~~-~~~~~~~~~~~~---~~--~~----~~~~~~~~~~~-L~~a~~~~vv 95 (560)
T TIGR00463 31 SNNPELRKKAKEVLE----EVEPIVEEVNDLS-SEELKELKKSLG---VD--KK----KKEKKAKGLIE-LPGAKMGEVV 95 (560)
T ss_pred ccCCccCcchhhHHH----HHHHHHHHHhhcC-HHHHHHHHhhhc---ch--hh----hccccccCCCC-CCCCcCCeeE
Confidence 345677788887633 3566777654322 222445554431 11 00 11111111111 2211 2233
Q ss_pred EEeccCCCCCCccchhhHHHHhHHHHHHcCCCcEEEEecChhhhhccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEEc
Q 025688 88 LYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSD 167 (249)
Q Consensus 88 iYtG~dPSg~sLHlGHlv~~~~l~~lQ~~g~~~v~i~IaD~~k~~~r~l~~e~i~~~~~eni~~iiA~G~dp~kt~i~~n 167 (249)
.=--=.||| .|||||+..++..-.+.+..+..+++-|-|--.. | -..+ +......++..+|++++. ++.+
T Consensus 96 tRFaPsPtG-~LHiGharaalln~~~Ar~~~G~~iLRidDTDp~--R-~~~e----~~~~I~edL~wLGi~~d~--~~~q 165 (560)
T TIGR00463 96 MRFAPNPSG-PLHIGHARAAILNQYFAKKYKGKLIIRFDDTDPR--R-VKPE----AYDMILEDLDWLGVKGDE--VVYQ 165 (560)
T ss_pred EEeCCCCCC-CccHHHHHHHHHHHHHHHhcCCEEEEEeCcCCcc--c-ccHH----HHHHHHHHHHHcCCCCCc--cccc
Confidence 333346788 9999999998865445555555677667664321 1 1222 222556677779999874 6788
Q ss_pred CcCCCcccHHHHH
Q 025688 168 FDYVGGAFYKNMV 180 (249)
Q Consensus 168 s~~~~~~~~~~~l 180 (249)
|+.+. .++..+-
T Consensus 166 Sd~~~-~y~~~a~ 177 (560)
T TIGR00463 166 SDRIE-EYYDYCR 177 (560)
T ss_pred cccHH-HHHHHHH
Confidence 88764 4554443
No 43
>cd02156 nt_trans nucleotidyl transferase superfamily. nt_trans (nucleotidyl transferase) This superfamily includes the class I amino-acyl tRNA synthetases, pantothenate synthetase (PanC), ATP sulfurylase, and the cytidylyltransferases, all of which have a conserved dinucleotide-binding domain.
Probab=93.49 E-value=0.24 Score=37.98 Aligned_cols=63 Identities=24% Similarity=0.278 Sum_probs=37.4
Q ss_pred EeccCCCCCCccchhhHHHHhHHHHHHcCCCcEEEEecChhhhhccCCCHHHHHHHHHHHHHHHHHcCCC
Q 025688 89 YTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFD 158 (249)
Q Consensus 89 YtG~dPSg~sLHlGHlv~~~~l~~lQ~~g~~~v~i~IaD~~k~~~r~l~~e~i~~~~~eni~~iiA~G~d 158 (249)
++|-.+ +.+|+||+..+..++.+++ .+++.++|.+....+ .....+++....-.+.++-+|.+
T Consensus 3 ~~~G~F--dp~H~GH~~l~~~a~~~~d----~~i~~i~~~~~~~~~-~~~~~~~~R~~~l~~~~~~~G~~ 65 (105)
T cd02156 3 RFPGEP--GYLHIGHAKLICRAKGIAD----QCVVRIDDNPPVKVW-QDPHELEERKESIEEDISVCGED 65 (105)
T ss_pred EeCCCC--CCCCHHHHHHHHHHHHhCC----cEEEEEcCCCccccc-CChHHHHHHHHHHHHHHHHHHhh
Confidence 344444 5899999998666655652 588889988854322 23445554443333334556653
No 44
>PTZ00402 glutamyl-tRNA synthetase; Provisional
Probab=93.38 E-value=0.24 Score=49.78 Aligned_cols=86 Identities=20% Similarity=0.257 Sum_probs=51.5
Q ss_pred eEEEeccCCCCCCccchhhHHHHhHHHHHHcCCCcEEEEecChhhhhccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEE
Q 025688 86 FYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIF 165 (249)
Q Consensus 86 ~~iYtG~dPSg~sLHlGHlv~~~~l~~lQ~~g~~~v~i~IaD~~k~~~r~l~~e~i~~~~~eni~~iiA~G~dp~kt~i~ 165 (249)
+..=--=.||| .|||||+..++..-.+.+..+..++|-|=|.-.. | -.. ++....+.++..+|++.+.- ++
T Consensus 53 v~tRFAPsPtG-yLHIGharaAllN~l~Ar~~gG~~iLRiEDTDp~--R-~~~----e~~d~IleDL~WLGl~wDe~-~~ 123 (601)
T PTZ00402 53 VVTRFPPEASG-FLHIGHAKAALINSMLADKYKGKLVFRFDDTNPS--K-EKE----HFEQAILDDLATLGVSWDVG-PT 123 (601)
T ss_pred eEEeeCCCCCC-cccHHHHHHHHHHHHHHHHhCCEEEEEEcCCCCc--c-cCH----HHHHHHHHHHHHCCCCCCCc-ee
Confidence 33333446888 9999999998874444454445676666553311 1 112 22225556777799988642 56
Q ss_pred EcCcCCCcccHHHHHH
Q 025688 166 SDFDYVGGAFYKNMVK 181 (249)
Q Consensus 166 ~ns~~~~~~~~~~~l~ 181 (249)
.||+.+. .|++.+.+
T Consensus 124 ~QSdr~d-~y~e~a~~ 138 (601)
T PTZ00402 124 YSSDYMD-LMYEKAEE 138 (601)
T ss_pred eccccHH-HHHHHHHH
Confidence 6888763 55554443
No 45
>PLN03233 putative glutamate-tRNA ligase; Provisional
Probab=93.35 E-value=0.22 Score=49.35 Aligned_cols=77 Identities=18% Similarity=0.299 Sum_probs=46.8
Q ss_pred CCCCCCccchhhHHHHhHHHHHHcCCCcEEEEecChhhhhccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEEcCcCCC
Q 025688 93 GPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVG 172 (249)
Q Consensus 93 dPSg~sLHlGHlv~~~~l~~lQ~~g~~~v~i~IaD~~k~~~r~l~~e~i~~~~~eni~~iiA~G~dp~kt~i~~ns~~~~ 172 (249)
.||| .|||||+-.++..-.+.++.+..+++-|=|--.. | -.. ++....++++.-+|++++. ++.||+.+.
T Consensus 19 sPtG-~LHiGharaAlln~l~Ar~~gG~~iLRiEDTDp~--R-~~~----e~~~~I~~dL~WLGl~wD~--~~~qSdr~~ 88 (523)
T PLN03233 19 EPSG-YLHIGHAKAALLNDYYARRYKGRLILRFDDTNPS--K-EKA----EFEESIIEDLGKIEIKPDS--VSFTSDYFE 88 (523)
T ss_pred CCCC-cccHHHHHHHHHHHHHHHHhCCEEEEEECCCCCC--c-cch----HHHHHHHHHHHHhCCCCCC--CccccccHH
Confidence 6788 9999999998864334444445666666553321 1 112 2222455566668999875 577888764
Q ss_pred cccHHHHH
Q 025688 173 GAFYKNMV 180 (249)
Q Consensus 173 ~~~~~~~l 180 (249)
.|+..+.
T Consensus 89 -~y~~~a~ 95 (523)
T PLN03233 89 -PIRCYAI 95 (523)
T ss_pred -HHHHHHH
Confidence 4554443
No 46
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=93.19 E-value=0.23 Score=50.49 Aligned_cols=76 Identities=22% Similarity=0.347 Sum_probs=48.2
Q ss_pred CceEEEecc-CCCCCCccchhhHHHH---hH-HHHHHcCCCcEEEEecChh--hhhc----cCCCHHH-HHHHHHHHHHH
Q 025688 84 EKFYLYTGR-GPSSEALHLGHLVPFM---FT-KYLQDAFKVPLVIQLTDDE--KCMW----KNLSVEE-SQRLARENAKD 151 (249)
Q Consensus 84 k~~~iYtG~-dPSg~sLHlGHlv~~~---~l-~~lQ~~g~~~v~i~IaD~~--k~~~----r~l~~e~-i~~~~~eni~~ 151 (249)
++++|-|++ -|+| .+||||+.+.+ .+ |++...|....++.=.|.| +... ...++.+ +.+++.+..+.
T Consensus 2 ~~~~itt~~py~ng-~~HiGH~~~~l~aDv~aR~~r~~G~~V~~~~g~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~ 80 (673)
T PRK00133 2 RKILVTCALPYANG-PIHLGHLVEYIQADIWVRYQRMRGHEVLFVCADDAHGTPIMLKAEKEGITPEELIARYHAEHKRD 80 (673)
T ss_pred CCEEEeCCCCCCCC-cccccchHHHHHHHHHHHHHHhcCCeeEEeCccCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 468888998 6998 99999987654 23 4455556444444455554 3322 1245543 45566666777
Q ss_pred HHHcCCCCC
Q 025688 152 IIACGFDVT 160 (249)
Q Consensus 152 iiA~G~dp~ 160 (249)
+.++|++.+
T Consensus 81 ~~~l~i~~d 89 (673)
T PRK00133 81 FAGFGISFD 89 (673)
T ss_pred HHHhCCCCC
Confidence 888898765
No 47
>PLN02224 methionine-tRNA ligase
Probab=93.05 E-value=0.23 Score=50.27 Aligned_cols=94 Identities=13% Similarity=0.129 Sum_probs=57.7
Q ss_pred hhccccccCChhHHHHHHHcCCceEEEecc-CCCCCCccchhhHHHH---h-HHHHHHcCCCcEEEEecChh--hhhc--
Q 025688 63 RRGVFFAHRDLNDILDAYEKGEKFYLYTGR-GPSSEALHLGHLVPFM---F-TKYLQDAFKVPLVIQLTDDE--KCMW-- 133 (249)
Q Consensus 63 ~Rgi~~~~~d~~~ll~~~e~~k~~~iYtG~-dPSg~sLHlGHlv~~~---~-l~~lQ~~g~~~v~i~IaD~~--k~~~-- 133 (249)
.|.|++--++.+.-. ..++++.+-|+. -|+| .+||||+.+.+ . .|++.-.|....++.=.|.| +...
T Consensus 51 ~~~~~~~~~~~~~~~---~~~~~~~ittp~pY~NG-~~HiGHa~~~~~aDviaR~~r~~G~~V~fv~G~DehG~kI~~~A 126 (616)
T PLN02224 51 KRALYCTSSSQESTV---DEADTFVLTTPLYYVNA-PPHMGSAYTTIAADSIARFQRLLGKKVIFITGTDEHGEKIATSA 126 (616)
T ss_pred cceeeccCCCcccCC---CCCCeEEEeCCCCCCCC-CCchhccHHHHHHHHHHHHHHhcCCceEEecCcCCcchHHHHHH
Confidence 455665555544322 236789999998 8888 99999988654 2 34555557555555566666 2321
Q ss_pred -c-CCCH-HHHHHHHHHHHHHHHHcCCCCC
Q 025688 134 -K-NLSV-EESQRLARENAKDIIACGFDVT 160 (249)
Q Consensus 134 -r-~l~~-e~i~~~~~eni~~iiA~G~dp~ 160 (249)
+ ..++ +-+++++.+..+.+.++|++++
T Consensus 127 ~~~g~~p~e~~~~~~~~~~~~~~~l~I~~D 156 (616)
T PLN02224 127 AANGRNPPEHCDIISQSYRTLWKDLDIAYD 156 (616)
T ss_pred HHcCCChHHHHHHHHHHHHHHHHHcCCCCC
Confidence 1 2333 4555555555566777888776
No 48
>PTZ00437 glutaminyl-tRNA synthetase; Provisional
Probab=92.95 E-value=0.23 Score=49.71 Aligned_cols=88 Identities=16% Similarity=0.102 Sum_probs=54.6
Q ss_pred CCceEEEeccCCCCCCccchhhHHHHhHHHHHHcCCCcEEEEecChhhhhccCCCHHHHHHHHHHHHHHHHHcCCCCCce
Q 025688 83 GEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKT 162 (249)
Q Consensus 83 ~k~~~iYtG~dPSg~sLHlGHlv~~~~l~~lQ~~g~~~v~i~IaD~~k~~~r~l~~e~i~~~~~eni~~iiA~G~dp~kt 162 (249)
++++..=-.=.||| .|||||+-.++..-.+.+..+..++|-|=|.-..- -.. .+......++.-+|++++..
T Consensus 49 ~gkv~tRFaPsPtG-~LHiGharaalln~~~Ar~~gG~~iLRiEDTDp~r---~~~----e~~~~I~~dL~wLGi~~D~~ 120 (574)
T PTZ00437 49 GGKPYFRFPPEPNG-FLHIGHAKSMNLNFGSARAHGGKCYLRYDDTNPET---EEQ----VYIDAIMEMVKWMGWKPDWV 120 (574)
T ss_pred CCcEEEEeCCCCCC-cccHHHHHHHHHHHHHHHHhCCEEEEEECCCCccc---cCh----HHHHHHHHHHHHcCCCCCCC
Confidence 44566556667898 99999999988754455545456777665543211 111 22224555666689998754
Q ss_pred EEEEcCcCCCcccHHHHHH
Q 025688 163 FIFSDFDYVGGAFYKNMVK 181 (249)
Q Consensus 163 ~i~~ns~~~~~~~~~~~l~ 181 (249)
+.+|++.. .+|+.+.+
T Consensus 121 --~~qS~y~~-~~ye~A~~ 136 (574)
T PTZ00437 121 --TFSSDYFD-QLHEFAVQ 136 (574)
T ss_pred --CcCchhHH-HHHHHHHH
Confidence 46788764 45655544
No 49
>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 2HZ7_A 2CFO_A 4A91_A 1NZJ_A 1N78_A 1G59_C 2CV2_A 2CV1_A 2CV0_B 1GLN_A ....
Probab=92.70 E-value=0.26 Score=45.71 Aligned_cols=70 Identities=14% Similarity=0.234 Sum_probs=39.4
Q ss_pred CCCCCCccchhhHHHHhHHHHHHcCCCcEEEEecChhhhhccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEEcCcCC
Q 025688 93 GPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYV 171 (249)
Q Consensus 93 dPSg~sLHlGHlv~~~~l~~lQ~~g~~~v~i~IaD~~k~~~r~l~~e~i~~~~~eni~~iiA~G~dp~kt~i~~ns~~~ 171 (249)
.||| .|||||+..++..--+.+..+..+++-|=|.-.. | ..++. ....+.++..+|++++ -..+.||+-+
T Consensus 9 sPtG-~lHiG~~r~al~n~~~Ar~~~G~~iLRieDtD~~--R--~~~~~---~~~i~~~L~wlGl~~D-~~~~~QS~r~ 78 (314)
T PF00749_consen 9 SPTG-YLHIGHARTALLNYLFARKYGGKFILRIEDTDPE--R--CRPEF---YDAILEDLRWLGLEWD-YGPYYQSDRL 78 (314)
T ss_dssp -SSS-S-BHHHHHHHHHHHHHHHHTTSEEEEEEETSSTT--T--CHHHH---HHHHHHHHHHHT---S-TCEEEGGGGH
T ss_pred CCCC-CcccchhHHHHHHHHHHhccCceEEEeccccccc--c--chhhH---HHHHHhheeEEEEecC-CeEEeHHHHH
Confidence 5898 9999999999864334444445677777664421 1 11222 2244556666899886 3356688864
No 50
>PRK05347 glutaminyl-tRNA synthetase; Provisional
Probab=92.66 E-value=0.7 Score=46.18 Aligned_cols=96 Identities=20% Similarity=0.250 Sum_probs=54.5
Q ss_pred HHHHHHcCC--ceEEEeccCCCCCCccchhhHHHHhHHHHHHcCCCcEEEEecChhhhhccCCCHHHHHHHHHHHHHHHH
Q 025688 76 ILDAYEKGE--KFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDII 153 (249)
Q Consensus 76 ll~~~e~~k--~~~iYtG~dPSg~sLHlGHlv~~~~l~~lQ~~g~~~v~i~IaD~~k~~~r~l~~e~i~~~~~eni~~ii 153 (249)
+.+.+++|+ +++.=--=.||| .|||||+-.++..-.+.++.+..+++-|=|--.. | -..+-+. ..+.++.
T Consensus 18 ~~~dl~~~~~~~v~tRFaPsPtG-~LHiG~ar~al~n~~~Ar~~~G~~iLRieDTd~~--r-~~~e~~~----~I~~dL~ 89 (554)
T PRK05347 18 IDEDLASGKHTRVHTRFPPEPNG-YLHIGHAKSICLNFGLAQDYGGKCNLRFDDTNPE--K-EDQEYVD----SIKEDVR 89 (554)
T ss_pred HHhHHhcCCcCceEEEeCCCCCC-cccHHHHHHHHHHHHHHHHhCCEEEEEECCCCCC--c-CChHHHH----HHHHHHH
Confidence 334455443 344444447888 9999999998875445444445666666553311 1 1122222 4445666
Q ss_pred HcCCCCCceEEEEcCcCCCcccHHHHHH
Q 025688 154 ACGFDVTKTFIFSDFDYVGGAFYKNMVK 181 (249)
Q Consensus 154 A~G~dp~kt~i~~ns~~~~~~~~~~~l~ 181 (249)
-+|++++.- ++.||+.+. .+|..+.+
T Consensus 90 wLGi~~d~~-~~~qS~r~~-~~y~~a~~ 115 (554)
T PRK05347 90 WLGFDWSGE-LRYASDYFD-QLYEYAVE 115 (554)
T ss_pred HcCCCCCCC-ceeeecCHH-HHHHHHHH
Confidence 689998422 467888763 55555544
No 51
>TIGR00440 glnS glutaminyl-tRNA synthetase. This protein is a relatively rare aminoacyl-tRNA synthetase, found in the cytosolic compartment of eukaryotes, in E. coli and a number of other Gram-negative Bacteria, and in Deinococcus radiodurans. In contrast, the pathway to Gln-tRNA in mitochondria, Archaea, Gram-positive Bacteria, and a number of other lineages is by misacylation with Glu followed by transamidation to correct the aminoacylation to Gln. This enzyme is a class I tRNA synthetase (hit by the pfam model tRNA-synt_1c) and is quite closely related to glutamyl-tRNA synthetases.
Probab=92.57 E-value=0.43 Score=47.38 Aligned_cols=78 Identities=19% Similarity=0.263 Sum_probs=46.9
Q ss_pred CCCCCCccchhhHHHHhHHHHHHcCCCcEEEEecChhhhhccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEEcCcCCC
Q 025688 93 GPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVG 172 (249)
Q Consensus 93 dPSg~sLHlGHlv~~~~l~~lQ~~g~~~v~i~IaD~~k~~~r~l~~e~i~~~~~eni~~iiA~G~dp~kt~i~~ns~~~~ 172 (249)
.||| .|||||+-.++..-.+.++.+..+++-|=|.-.. | -..|-+. ....++.-+|++++.- ++.||+.+.
T Consensus 8 sPtG-~LHiG~ar~al~n~~~A~~~~G~~iLRieDTd~~--r-~~~e~~~----~I~~dL~wLG~~~d~~-~~~qS~~~~ 78 (522)
T TIGR00440 8 EPNG-YLHIGHAKSICLNFGYAKYYNGTCNLRFDDTNPV--K-EDPEYVE----SIKRDVEWLGFKWEGK-IRYSSDYFD 78 (522)
T ss_pred CCCC-cccHHHHHHHHHHHHHHHHhCCEEEEEEcCCCcc--c-CChHHHH----HHHHHHHHcCCCCCCC-ceEccccHH
Confidence 5898 9999999998875445554445666666554321 1 1122222 4445666689998422 456888763
Q ss_pred cccHHHHH
Q 025688 173 GAFYKNMV 180 (249)
Q Consensus 173 ~~~~~~~l 180 (249)
.+|..+.
T Consensus 79 -~~~~~a~ 85 (522)
T TIGR00440 79 -ELYRYAE 85 (522)
T ss_pred -HHHHHHH
Confidence 4555443
No 52
>PLN02859 glutamine-tRNA ligase
Probab=92.46 E-value=0.71 Score=47.89 Aligned_cols=101 Identities=17% Similarity=0.156 Sum_probs=57.8
Q ss_pred cCChhHHHHHHHc-CCceEEEeccCCCCCCccchhhHHHHhHHHHHHcCCCcEEEEecChhhhhccCCCHHHHHHHHHHH
Q 025688 70 HRDLNDILDAYEK-GEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLAREN 148 (249)
Q Consensus 70 ~~d~~~ll~~~e~-~k~~~iYtG~dPSg~sLHlGHlv~~~~l~~lQ~~g~~~v~i~IaD~~k~~~r~l~~e~i~~~~~en 148 (249)
+...+.+.+.++. +++++.=-.=.||| .|||||+-.++..-.+.+..+..+++-|=|.-.. | -.. ++....
T Consensus 248 ~~~~~~~~~hl~~t~g~V~tRFaPsPtG-~LHiGharaallN~~~Ar~~~G~~~LRieDTdp~--r-~~~----e~~~~I 319 (788)
T PLN02859 248 SNTKEILEKHLKATGGKVYTRFPPEPNG-YLHIGHAKAMFVDFGLAKERGGCCYLRFDDTNPE--A-EKK----EYIDHI 319 (788)
T ss_pred cCcHHHHHHHHhhcCCceEEEeCCCCCC-cccHHHHHHHHHHHHHHHHhCCEEEEEecCCCCC--c-cch----HHHHHH
Confidence 3444545444443 34455555557898 9999999988864444444445676666553311 1 111 222234
Q ss_pred HHHHHHcCCCCCceEEEEcCcCCCcccHHHHHH
Q 025688 149 AKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVK 181 (249)
Q Consensus 149 i~~iiA~G~dp~kt~i~~ns~~~~~~~~~~~l~ 181 (249)
..++.-+|+++++ ++.||++.. .+|+.+..
T Consensus 320 ~edL~WLG~~~d~--~~~qSd~f~-~~Y~~A~~ 349 (788)
T PLN02859 320 EEIVEWMGWEPFK--ITYTSDYFQ-ELYELAVE 349 (788)
T ss_pred HHHHHHcCCCCCC--cccccHhHH-HHHHHHHH
Confidence 4555568999875 467888763 45555443
No 53
>PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional
Probab=92.46 E-value=0.37 Score=46.75 Aligned_cols=69 Identities=16% Similarity=0.280 Sum_probs=43.1
Q ss_pred CCCCCCccchhhHHHHhHHHHHHcCCCcEEEEecChhhhhccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEEcCcCC
Q 025688 93 GPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYV 171 (249)
Q Consensus 93 dPSg~sLHlGHlv~~~~l~~lQ~~g~~~v~i~IaD~~k~~~r~l~~e~i~~~~~eni~~iiA~G~dp~kt~i~~ns~~~ 171 (249)
-||| .|||||+..+++.--+.+..+..+++-|=|--.. | ...+-.. ....++.-+|++.+. .+.||+-+
T Consensus 7 SPTG-~LHiG~artAL~n~l~Ar~~gG~fiLRiEDTD~~--R-~~~e~~~----~I~~~L~WlGl~wDe--~y~QSeR~ 75 (433)
T PRK12410 7 SPTG-DMHIGNLRAAIFNYIVAKQQNEDFLIRIEDTDKE--R-NIEGKDK----EILEILNLFGISWDK--LVYQSENL 75 (433)
T ss_pred CCCC-cccHHHHHHHHHHHHHHHHcCCEEEEEeCcCCCC--c-CChHHHH----HHHHHHHHcCCCCCC--CeehhccH
Confidence 4898 9999999998874333343435677777664421 1 1222222 344555568999885 57888875
No 54
>PLN02907 glutamate-tRNA ligase
Probab=92.29 E-value=0.4 Score=49.37 Aligned_cols=80 Identities=25% Similarity=0.352 Sum_probs=49.1
Q ss_pred ccCCCCCCccchhhHHHHhHHHHHHcCCCcEEEEecChhhhhccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEEcCcC
Q 025688 91 GRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDY 170 (249)
Q Consensus 91 G~dPSg~sLHlGHlv~~~~l~~lQ~~g~~~v~i~IaD~~k~~~r~l~~e~i~~~~~eni~~iiA~G~dp~kt~i~~ns~~ 170 (249)
-=.||| -|||||+-.++..-.+.++.+..+++-|=|.-.. | -..|-+. ....++.-+|+++++ ++.||+.
T Consensus 219 aPsPtG-~LHiG~ar~al~n~~~Ar~~~G~~iLR~eDTdp~--r-~~~e~~~----~I~~dl~wLG~~~d~--~~~qS~r 288 (722)
T PLN02907 219 PPEPSG-YLHIGHAKAALLNQYFARRYKGKLIVRFDDTNPS--K-ESDEFVE----NILKDIETLGIKYDA--VTYTSDY 288 (722)
T ss_pred CCCCCC-cccHHHHHHHHHHHHHHHHhCCEEEEEecCCCCC--c-CChHHHH----HHHHHHHHcCCCCCC--ccccccc
Confidence 346888 9999999988875445555555666666553321 1 1222222 444566668999885 4678887
Q ss_pred CCcccHHHHHH
Q 025688 171 VGGAFYKNMVK 181 (249)
Q Consensus 171 ~~~~~~~~~l~ 181 (249)
+. .+++.+.+
T Consensus 289 ~~-~y~~~a~~ 298 (722)
T PLN02907 289 FP-QLMEMAEK 298 (722)
T ss_pred HH-HHHHHHHH
Confidence 64 55554443
No 55
>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=92.20 E-value=0.45 Score=46.71 Aligned_cols=77 Identities=14% Similarity=0.295 Sum_probs=46.6
Q ss_pred CCCCCCccchhhHHHHhHHHHHHcCCCcEEEEecChhhhhccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEEcCcCCC
Q 025688 93 GPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVG 172 (249)
Q Consensus 93 dPSg~sLHlGHlv~~~~l~~lQ~~g~~~v~i~IaD~~k~~~r~l~~e~i~~~~~eni~~iiA~G~dp~kt~i~~ns~~~~ 172 (249)
.||| -|||||+...++.--+.++.+..++|-|=|--. .| -+.|-.. ....++.-+|++++.. ++.||+.+.
T Consensus 17 sPtG-~LHiG~artAl~N~~~Ar~~~G~fiLRiEDTD~--~R-~~~e~~~----~I~~~L~WLGl~wde~-~~~QS~r~~ 87 (472)
T COG0008 17 SPTG-YLHIGHARTALLNYLYARKYGGKFILRIEDTDP--ER-ETPEAED----AILEDLEWLGLDWDEG-PYYQSERFD 87 (472)
T ss_pred CCCC-ccchHHHHHHHHHHHHHHHhCCEEEEEecCCCC--CC-CCHHHHH----HHHHHHHhcCCCCCCc-eeehhhhHH
Confidence 5788 999999999887433444444567776655332 01 1222222 3344555689999865 788998763
Q ss_pred cccHHHH
Q 025688 173 GAFYKNM 179 (249)
Q Consensus 173 ~~~~~~~ 179 (249)
.|+.-+
T Consensus 88 -~Y~~~~ 93 (472)
T COG0008 88 -IYYEYA 93 (472)
T ss_pred -HHHHHH
Confidence 444443
No 56
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=91.74 E-value=0.43 Score=47.19 Aligned_cols=75 Identities=23% Similarity=0.328 Sum_probs=43.5
Q ss_pred CceEEEeccCCC--CCCccchhhHHH-----HhHHHHHHcCCCcEEEEecChh--hhh---cc-CCCHHHH-HHHHHHHH
Q 025688 84 EKFYLYTGRGPS--SEALHLGHLVPF-----MFTKYLQDAFKVPLVIQLTDDE--KCM---WK-NLSVEES-QRLARENA 149 (249)
Q Consensus 84 k~~~iYtG~dPS--g~sLHlGHlv~~-----~~l~~lQ~~g~~~v~i~IaD~~--k~~---~r-~l~~e~i-~~~~~eni 149 (249)
++++| |+--|+ | .+||||+.+. +..|++...|....++.=.|.| +.. .+ ..+.+++ .+++.+..
T Consensus 3 ~~~~i-~~~~py~ng-~~HiGH~~~~~~~~D~~~R~~r~~G~~v~~~~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~ 80 (556)
T PRK12268 3 MRILI-TSAWPYANG-PLHLGHLAGSGLPADVFARYQRLKGNEVLFVSGSDEHGTPIELAAKKEGVTPQELADKYHEEHK 80 (556)
T ss_pred CcEEE-ecCCCCCCC-CccccccccchhHHHHHHHHHHhcCCceEecCcCCCcccHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 34444 444455 5 9999998865 3345555556544455555555 321 12 2455443 55555666
Q ss_pred HHHHHcCCCCC
Q 025688 150 KDIIACGFDVT 160 (249)
Q Consensus 150 ~~iiA~G~dp~ 160 (249)
+++.++|++++
T Consensus 81 ~~~~~l~i~~d 91 (556)
T PRK12268 81 EDFKKLGISYD 91 (556)
T ss_pred HHHHHcCCcCC
Confidence 77888999876
No 57
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=91.59 E-value=1.3 Score=38.72 Aligned_cols=76 Identities=22% Similarity=0.191 Sum_probs=44.3
Q ss_pred CCceEEEeccCCCCCCccchhhHHHH---hH-HHHHHcCCCcEEEEecChh--hh---hcc-CCCHHH-HHHHHHHHHHH
Q 025688 83 GEKFYLYTGRGPSSEALHLGHLVPFM---FT-KYLQDAFKVPLVIQLTDDE--KC---MWK-NLSVEE-SQRLARENAKD 151 (249)
Q Consensus 83 ~k~~~iYtG~dPSg~sLHlGHlv~~~---~l-~~lQ~~g~~~v~i~IaD~~--k~---~~r-~l~~e~-i~~~~~eni~~ 151 (249)
++.-..-||--|.+ .+||||+-..+ .+ |++...|....+++=.|+| +. ..+ ..++.+ +++++.+..++
T Consensus 19 ~~~~~y~~gpt~y~-~~HiGH~r~~v~~Dvl~R~lr~~G~~V~~~~g~dd~g~ki~~~A~~~g~~p~e~~~~~~~~f~~~ 97 (213)
T cd00672 19 GLVTMYVCGPTVYD-YAHIGHARTYVVFDVLRRYLEDLGYKVRYVQNITDIDDKIIKRAREEGLSWKEVADYYTKEFFED 97 (213)
T ss_pred CCceEEEeCCccCC-CcccccchhHHHHHHHHHHHHhcCCeeEEEeecCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 34344557888887 89999966543 34 4455556444444433333 22 222 255544 44455566677
Q ss_pred HHHcCCCC
Q 025688 152 IIACGFDV 159 (249)
Q Consensus 152 iiA~G~dp 159 (249)
+.++|+.+
T Consensus 98 ~~~l~i~~ 105 (213)
T cd00672 98 MKALNVLP 105 (213)
T ss_pred HHHcCCCC
Confidence 77899986
No 58
>PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional
Probab=91.20 E-value=0.57 Score=48.58 Aligned_cols=95 Identities=18% Similarity=0.261 Sum_probs=53.2
Q ss_pred HHHHHHcCC--ceEEEeccCCCCCCccchhhHHHHhHHHHHHcCCCcEEEEecChhhhhccCCCHHHHHHHHHHHHHHHH
Q 025688 76 ILDAYEKGE--KFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDII 153 (249)
Q Consensus 76 ll~~~e~~k--~~~iYtG~dPSg~sLHlGHlv~~~~l~~lQ~~g~~~v~i~IaD~~k~~~r~l~~e~i~~~~~eni~~ii 153 (249)
+.+.++.|+ +++.=--=.||| .|||||+-.++..-.+.+..+..+++-|=|--... -..|-+. ....++.
T Consensus 20 ~~~~l~~g~~~~v~tRFaPsPtG-~lHiGhar~alln~~~A~~~~G~~~LR~eDTd~~r---~~~e~~~----~I~~dl~ 91 (771)
T PRK14703 20 IEEDLEAGRYPRVVTRFPPEPNG-YLHIGHAKSILLNFGIARDYGGRCHLRMDDTNPET---EDTEYVE----AIKDDVR 91 (771)
T ss_pred HHHHHhcCCCCceEEEeCcCCCC-cccHHHHHHHHHHHHHHHHhCCEEEEEeCCCCCCc---CChHHHH----HHHHHHH
Confidence 334455443 333333346788 99999999988754455545456777665533111 1112222 4445556
Q ss_pred HcCCCCCceEEEEcCcCCCcccHHHHH
Q 025688 154 ACGFDVTKTFIFSDFDYVGGAFYKNMV 180 (249)
Q Consensus 154 A~G~dp~kt~i~~ns~~~~~~~~~~~l 180 (249)
-+|++++.. ++.||+... .||+.+.
T Consensus 92 wLG~~wd~~-~~~qS~~~~-~y~~~a~ 116 (771)
T PRK14703 92 WLGFDWGEH-LYYASDYFE-RMYAYAE 116 (771)
T ss_pred HcCCCCCCC-ceEeecCHH-HHHHHHH
Confidence 689987533 466888763 5554443
No 59
>PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3SP1_B 3TQO_A 3C8Z_B 1LI5_B 1LI7_B 1U0B_B.
Probab=91.12 E-value=0.84 Score=42.27 Aligned_cols=87 Identities=20% Similarity=0.219 Sum_probs=48.4
Q ss_pred CCceEEE-eccCCCCCCccchhhHHHH---h-HHHHHHcCCCcEEEE-ecChh-hhhcc----CCCHHH-HHHHHHHHHH
Q 025688 83 GEKFYLY-TGRGPSSEALHLGHLVPFM---F-TKYLQDAFKVPLVIQ-LTDDE-KCMWK----NLSVEE-SQRLARENAK 150 (249)
Q Consensus 83 ~k~~~iY-tG~dPSg~sLHlGHlv~~~---~-l~~lQ~~g~~~v~i~-IaD~~-k~~~r----~l~~e~-i~~~~~eni~ 150 (249)
.+.+.+| ||--+-. ..||||+-+++ . .|+|+..|....+++ |+|-. |.+.+ ..+..+ .+++..+..+
T Consensus 6 ~~~v~~Y~CGPTVYd-~~HiGhaR~~v~~D~l~R~L~~~g~~V~~V~NiTDiDDKii~~A~~~g~~~~ela~~y~~~f~~ 84 (300)
T PF01406_consen 6 PGKVRMYVCGPTVYD-YAHIGHARTYVFFDVLRRYLEYLGYDVTYVMNITDIDDKIIKRAREEGVSPQELARRYEEEFFE 84 (300)
T ss_dssp TTEEEEEEEEEBTTS---BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEB-SSHHHHHHHHHTTS-HHHHHHHHHHHHHH
T ss_pred CCeEEEEcCCCCCCC-CCCCcceeeeeeHHHHHHHHHHcCCeEEEEEeccccchHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence 4567776 6877775 99999976654 3 356777664333444 99977 65432 256655 4556667778
Q ss_pred HHHHcCCCCCceEEEEcCcCC
Q 025688 151 DIIACGFDVTKTFIFSDFDYV 171 (249)
Q Consensus 151 ~iiA~G~dp~kt~i~~ns~~~ 171 (249)
+..++|+.|. ...-.-++.+
T Consensus 85 dm~~Lnv~~p-~~~prate~i 104 (300)
T PF01406_consen 85 DMKALNVLPP-DHYPRATEHI 104 (300)
T ss_dssp HHHHTT-----SEEEEGGGGH
T ss_pred HHHHcCCCCC-ccccchhccH
Confidence 8888998753 2334444443
No 60
>TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the bacterial and mitochondrial forms of the enzyme. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). This model is highly specific. Proteins with positive scores below the trusted cutoff may be fragments rather than full-length sequences.
Probab=91.07 E-value=0.78 Score=44.94 Aligned_cols=70 Identities=11% Similarity=0.158 Sum_probs=43.3
Q ss_pred CCCCCCccchhhHHHHhHHHHHHcCCCcEEEEecChhhhhccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEEcCcCC
Q 025688 93 GPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYV 171 (249)
Q Consensus 93 dPSg~sLHlGHlv~~~~l~~lQ~~g~~~v~i~IaD~~k~~~r~l~~e~i~~~~~eni~~iiA~G~dp~kt~i~~ns~~~ 171 (249)
-||| .|||||+..++..--+.+..+..+++-|=|--.- | ...+-.. ..+.++.-+|++.+. ..+.||+-.
T Consensus 9 sPtG-~lHiG~~rtal~n~l~Ar~~~G~~iLRieDtD~~--R-~~~~~~~----~i~~~L~wlGl~~de-~~~~QS~r~ 78 (470)
T TIGR00464 9 SPTG-YLHIGGARTALFNYLFAKHTGGEFILRIEDTDLE--R-NIEEAEE----AILEGLKWLGISWDE-GPYYQSQRL 78 (470)
T ss_pred CCCC-cccHHHHHHHHHHHHHHHHcCCEEEEEeCcCCCc--c-CChHHHH----HHHHHHHHCCCCCCC-CeeehhCCH
Confidence 5898 9999999999874334443335677777664321 1 1222222 444566668998863 267788865
No 61
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=90.50 E-value=0.8 Score=47.70 Aligned_cols=76 Identities=14% Similarity=0.192 Sum_probs=42.2
Q ss_pred CCceEEEeccCCC--CCCccchhhHHHH---hHHHHHHcCCCcEEEEec-Chhh--h---h-ccCCCHH-HHHHHHHHHH
Q 025688 83 GEKFYLYTGRGPS--SEALHLGHLVPFM---FTKYLQDAFKVPLVIQLT-DDEK--C---M-WKNLSVE-ESQRLARENA 149 (249)
Q Consensus 83 ~k~~~iYtG~dPS--g~sLHlGHlv~~~---~l~~lQ~~g~~~v~i~Ia-D~~k--~---~-~r~l~~e-~i~~~~~eni 149 (249)
++++++..|+ |+ | .||+||+.... .+.++|+.-+..|....| |.|. . . ....+.. -+.++..+..
T Consensus 31 ~~~~~i~~~p-Py~nG-~lHiGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~ 108 (805)
T PRK00390 31 SKKYYVLDMF-PYPSG-GLHMGHVRNYTIGDVIARYKRMQGYNVLHPMGWDAFGLPAENAAIKTGTHPAEWTYENIANMK 108 (805)
T ss_pred CCCEEEEccC-CCCCC-CcchhhhHHHHHHHHHHHHHHhcCCcccccCccCCCCCHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 4578998887 66 7 89999988653 344566654455555543 4442 1 1 1223433 2333333444
Q ss_pred HHHHHcCCCCC
Q 025688 150 KDIIACGFDVT 160 (249)
Q Consensus 150 ~~iiA~G~dp~ 160 (249)
+.+.++|+..+
T Consensus 109 ~~~~~lGi~~D 119 (805)
T PRK00390 109 KQLKSLGFSYD 119 (805)
T ss_pred HHHHHhCCccc
Confidence 45666787443
No 62
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=90.44 E-value=0.54 Score=44.87 Aligned_cols=66 Identities=27% Similarity=0.411 Sum_probs=36.8
Q ss_pred CCCCCccchhhHHHH----hHHHHHHcCCCcEEEEecChh--hhhc---c-CCCHHH-HHHHHHHHHHHHHHcCCCCC
Q 025688 94 PSSEALHLGHLVPFM----FTKYLQDAFKVPLVIQLTDDE--KCMW---K-NLSVEE-SQRLARENAKDIIACGFDVT 160 (249)
Q Consensus 94 PSg~sLHlGHlv~~~----~l~~lQ~~g~~~v~i~IaD~~--k~~~---r-~l~~e~-i~~~~~eni~~iiA~G~dp~ 160 (249)
|.| .|||||+.+.+ ..|+++..|+..+++.=+|.| +... + ..++++ +.+++.+..+.+.++|++.+
T Consensus 10 ~Ng-~lHlGH~~~~l~ADv~aR~~r~~G~~v~~~tGtDehG~~i~~~A~~~g~~p~~~~~~~~~~~~~~~~~~~I~~D 86 (391)
T PF09334_consen 10 PNG-DLHLGHLYPYLAADVLARYLRLRGHDVLFVTGTDEHGSKIETAAEKQGIDPEEFCDKYSAKFKELLEALNISYD 86 (391)
T ss_dssp TSS-S-BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEE-SSHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHTT---S
T ss_pred CCC-CCCCChhHHHHHHHHHHHHHhhcccceeeEEecchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCc
Confidence 677 89999988664 345666777665666678888 3221 1 256654 44444455556667888876
No 63
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=88.64 E-value=1 Score=41.48 Aligned_cols=66 Identities=17% Similarity=0.060 Sum_probs=38.2
Q ss_pred CCCCCccchhhHHHH---h-HHHHHHcCCCcEEEEecChh--hhhc---c-CCCHHHHHHHH-HHHHHHHHHcCCCCC
Q 025688 94 PSSEALHLGHLVPFM---F-TKYLQDAFKVPLVIQLTDDE--KCMW---K-NLSVEESQRLA-RENAKDIIACGFDVT 160 (249)
Q Consensus 94 PSg~sLHlGHlv~~~---~-l~~lQ~~g~~~v~i~IaD~~--k~~~---r-~l~~e~i~~~~-~eni~~iiA~G~dp~ 160 (249)
|+| .+||||+.+.. . .|++...|+...++.=.|.| +... + ..+++++.+.. .+..+++.++|++++
T Consensus 11 ~ng-~~HlGH~~~~~~~Dv~~R~~r~~G~~V~~~~g~Dd~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~l~~LgI~~D 87 (319)
T cd00814 11 VNG-VPHLGHLYGTVLADVFARYQRLRGYDVLFVTGTDEHGTKIEQKAEEEGVTPQELCDKYHEIFKDLFKWLNISFD 87 (319)
T ss_pred CCC-CcchhhHHHHHHHHHHHHHHHhCCCcccccCccCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCcCC
Confidence 456 89999988654 2 34555557555556555555 3221 1 25665554433 345566667887655
No 64
>PRK11893 methionyl-tRNA synthetase; Reviewed
Probab=88.57 E-value=1.4 Score=42.96 Aligned_cols=75 Identities=20% Similarity=0.214 Sum_probs=41.7
Q ss_pred ceEEEecc-CCCCCCccchhhHHHH---h-HHHHHHcCCCcEEEEecChh--hhhc---c-CCCHHH-HHHHHHHHHHHH
Q 025688 85 KFYLYTGR-GPSSEALHLGHLVPFM---F-TKYLQDAFKVPLVIQLTDDE--KCMW---K-NLSVEE-SQRLARENAKDI 152 (249)
Q Consensus 85 ~~~iYtG~-dPSg~sLHlGHlv~~~---~-l~~lQ~~g~~~v~i~IaD~~--k~~~---r-~l~~e~-i~~~~~eni~~i 152 (249)
++.|.++. -|+| .+||||+.+.+ . .|++...|....++.=.|.+ +... + ..+.++ ++++..+..+++
T Consensus 2 ~~~i~~~~P~~~g-~~HiGh~~~~~~~Dv~~R~~r~~G~~v~~v~g~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l 80 (511)
T PRK11893 2 KFYITTPIYYPNG-KPHIGHAYTTLAADVLARFKRLRGYDVFFLTGTDEHGQKIQRKAEEAGISPQELADRNSAAFKRLW 80 (511)
T ss_pred CEEEecCCCCCCC-CcccchhHHHHHHHHHHHHHHhcCCcEEecCCCCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 34444443 4566 99999976653 2 45566667555555555555 2221 1 245543 333444555667
Q ss_pred HHcCCCCC
Q 025688 153 IACGFDVT 160 (249)
Q Consensus 153 iA~G~dp~ 160 (249)
.++|++++
T Consensus 81 ~~l~I~~D 88 (511)
T PRK11893 81 EALNISYD 88 (511)
T ss_pred HHhCCCcC
Confidence 77787654
No 65
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=88.06 E-value=1.3 Score=44.38 Aligned_cols=74 Identities=20% Similarity=0.204 Sum_probs=44.8
Q ss_pred CceEEEecc-CCCCCCccchhhHHHH---hHHHHHH-cCCCcEEEEecChh--hhhcc----CCCHHH-HHHHHHHHHHH
Q 025688 84 EKFYLYTGR-GPSSEALHLGHLVPFM---FTKYLQD-AFKVPLVIQLTDDE--KCMWK----NLSVEE-SQRLARENAKD 151 (249)
Q Consensus 84 k~~~iYtG~-dPSg~sLHlGHlv~~~---~l~~lQ~-~g~~~v~i~IaD~~--k~~~r----~l~~e~-i~~~~~eni~~ 151 (249)
++++|-|.+ -|.| .+||||+.+.+ .+.++|+ .|+-.++|.=+|.| +...+ ..++++ +.++..+-...
T Consensus 5 ~~~~VTtalpY~Ng-~~HlGH~~~~l~ADv~aRy~Rl~G~~v~fvtGtDeHGt~I~~~A~~~g~tP~el~d~~~~~~~~~ 83 (558)
T COG0143 5 KKILVTTALPYPNG-PPHLGHLYTYLAADVYARYLRLRGYEVFFLTGTDEHGTKIELKAEKEGITPQELVDKNHEEFKEL 83 (558)
T ss_pred CcEEEecCCCCCCC-CcchhhHHHHHHHHHHHHHHHhcCCeEEEEeccCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 566666665 4666 99999987655 3455665 45545555566777 44321 256655 44455555666
Q ss_pred HHHcCCC
Q 025688 152 IIACGFD 158 (249)
Q Consensus 152 iiA~G~d 158 (249)
+.+++++
T Consensus 84 ~~~l~Is 90 (558)
T COG0143 84 FKALNIS 90 (558)
T ss_pred HHHhCCc
Confidence 7777664
No 66
>TIGR00398 metG methionyl-tRNA synthetase. The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma
Probab=87.94 E-value=1.8 Score=42.66 Aligned_cols=67 Identities=18% Similarity=0.016 Sum_probs=38.5
Q ss_pred CCCCCCccchhhHHHH---hHHH-HHHcCCCcEEEEecChh--hhh---cc-CCCHHHHHHHH-HHHHHHHHHcCCCCC
Q 025688 93 GPSSEALHLGHLVPFM---FTKY-LQDAFKVPLVIQLTDDE--KCM---WK-NLSVEESQRLA-RENAKDIIACGFDVT 160 (249)
Q Consensus 93 dPSg~sLHlGHlv~~~---~l~~-lQ~~g~~~v~i~IaD~~--k~~---~r-~l~~e~i~~~~-~eni~~iiA~G~dp~ 160 (249)
-|+| .+||||+.+.+ .+.+ +...|....++.=.|.| +.. .+ ..+.+++.+.. .+..+++.++|++++
T Consensus 9 ~~ng-~lHiGH~~~~~~aDvl~R~~r~~G~~V~~v~g~D~~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~l~~LgI~~D 86 (530)
T TIGR00398 9 YANG-KPHLGHAYTTILADVYARYKRLRGYEVLFVCGTDEHGTKIELKAEQEGLTPKELVDKYHEEFKDDWKWLNISFD 86 (530)
T ss_pred CCCC-CcccchhHHHHHHHHHHHHHHhcCCeEEEecccCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 4677 89999987654 3344 44456444444545554 221 22 25666554433 355566777898765
No 67
>PLN02627 glutamyl-tRNA synthetase
Probab=87.43 E-value=1.8 Score=43.15 Aligned_cols=79 Identities=14% Similarity=0.207 Sum_probs=46.4
Q ss_pred CceEEEeccCCCCCCccchhhHHHHhH-HHHHHcCCCcEEEEecChhhhhccCCCHHHHHHHHHHHHHHHHHcCCCCCce
Q 025688 84 EKFYLYTGRGPSSEALHLGHLVPFMFT-KYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKT 162 (249)
Q Consensus 84 k~~~iYtG~dPSg~sLHlGHlv~~~~l-~~lQ~~g~~~v~i~IaD~~k~~~r~l~~e~i~~~~~eni~~iiA~G~dp~kt 162 (249)
.++++=--=-||| .|||||+-.+++. .+-+..| ..+++-|=|--.- | ...+-.. ....++.-+|++.+..
T Consensus 44 ~~vr~RFAPSPTG-~LHiG~aRtAL~n~l~Ar~~g-G~fiLRIEDTD~~--R-~~~e~~~----~I~~~L~WLGl~wDeg 114 (535)
T PLN02627 44 GPVRVRFAPSPTG-NLHVGGARTALFNYLFARSKG-GKFVLRIEDTDLA--R-STKESEE----AVLRDLKWLGLDWDEG 114 (535)
T ss_pred CceEEEeCCCCCC-CccHHHHHHHHHHHHHHHHhC-CEEEEEeCcCCCC--C-CChHHHH----HHHHHHHHcCCCCCcC
Confidence 3444444447888 9999999988863 3334444 5677777664421 1 1222222 3445555689987643
Q ss_pred -------EEEEcCcCC
Q 025688 163 -------FIFSDFDYV 171 (249)
Q Consensus 163 -------~i~~ns~~~ 171 (249)
--+.||+-.
T Consensus 115 p~~gg~~gpy~QSeR~ 130 (535)
T PLN02627 115 PDVGGEYGPYRQSERN 130 (535)
T ss_pred cccCCCCCCeeeeccH
Confidence 247788864
No 68
>TIGR00435 cysS cysteinyl-tRNA synthetase. This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln).
Probab=87.33 E-value=2.1 Score=41.80 Aligned_cols=77 Identities=21% Similarity=0.130 Sum_probs=47.0
Q ss_pred CCceEEEeccCCCCCCccchhhHHHH---h-HHHHHHcCCCcEEEEecChh--hhhc----cCCCHHHHH-HHHHHHHHH
Q 025688 83 GEKFYLYTGRGPSSEALHLGHLVPFM---F-TKYLQDAFKVPLVIQLTDDE--KCMW----KNLSVEESQ-RLARENAKD 151 (249)
Q Consensus 83 ~k~~~iYtG~dPSg~sLHlGHlv~~~---~-l~~lQ~~g~~~v~i~IaD~~--k~~~----r~l~~e~i~-~~~~eni~~ 151 (249)
++.-...||--|.+ .+||||..+.+ . .|++...|....+++-.|++ |... ...+++++. ++..+..++
T Consensus 20 ~~v~~yvcgptvy~-~~HiGhar~~v~~Dvl~R~lr~~G~~V~~v~n~tD~ddkIi~~A~~~g~~~~e~a~~~~~~f~~d 98 (465)
T TIGR00435 20 GKVKMYVCGPTVYD-YCHIGHARTAIVFDVLRRYLRYLGYKVQYVQNITDIDDKIIKRARENGESVYEVSERFIEAYFED 98 (465)
T ss_pred CcceEEEecCccCC-CcccccchHHHHHHHHHHHHHHcCCcEEEEEeeCCccHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 44344558998997 89999976554 3 34566667555555533444 4322 225665544 344466677
Q ss_pred HHHcCCCCC
Q 025688 152 IIACGFDVT 160 (249)
Q Consensus 152 iiA~G~dp~ 160 (249)
+.++|+.+.
T Consensus 99 l~~LgI~~d 107 (465)
T TIGR00435 99 MKALNVLPP 107 (465)
T ss_pred HHHhCCCCC
Confidence 778898754
No 69
>PRK01406 gltX glutamyl-tRNA synthetase; Reviewed
Probab=87.13 E-value=1.9 Score=42.27 Aligned_cols=72 Identities=13% Similarity=0.220 Sum_probs=43.2
Q ss_pred cCCCCCCccchhhHHHHhHHHHHHcCCCcEEEEecChhhhhccCCCHHHHHHHHHHHHHHHHHcCCCCCce------EEE
Q 025688 92 RGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKT------FIF 165 (249)
Q Consensus 92 ~dPSg~sLHlGHlv~~~~l~~lQ~~g~~~v~i~IaD~~k~~~r~l~~e~i~~~~~eni~~iiA~G~dp~kt------~i~ 165 (249)
=-||| .|||||+-.+++.--+.++.+...++-|=|--.- | ...+-+. ....++.-+|++.+.- -.+
T Consensus 11 PSPtG-~lHiG~~rtal~n~l~Ar~~~G~fiLRieDtD~~--R-~~~~~~~----~i~~~L~wlGl~~De~p~~~~~gpy 82 (476)
T PRK01406 11 PSPTG-YLHIGGARTALFNWLFARHHGGKFILRIEDTDQE--R-STEEAEE----AILEGLKWLGLDWDEGPDGGPYGPY 82 (476)
T ss_pred CCCCC-cccHHHHHHHHHHHHHHHHcCCEEEEEeCcCCCC--C-CChHHHH----HHHHHHHHCCCCCCCCCccCCCCce
Confidence 35898 9999999999874334444445666667664421 1 1122222 3445556689987633 147
Q ss_pred EcCcCC
Q 025688 166 SDFDYV 171 (249)
Q Consensus 166 ~ns~~~ 171 (249)
.||+-.
T Consensus 83 ~QS~r~ 88 (476)
T PRK01406 83 RQSERL 88 (476)
T ss_pred ehhcCH
Confidence 788864
No 70
>PRK12267 methionyl-tRNA synthetase; Reviewed
Probab=86.81 E-value=1.5 Score=44.38 Aligned_cols=76 Identities=16% Similarity=0.132 Sum_probs=43.5
Q ss_pred CceEEEecc-CCCCCCccchhhHHHH---hH-HHHHHcCCCcEEEEecChh--hhhc----cCCCHHHH-HHHHHHHHHH
Q 025688 84 EKFYLYTGR-GPSSEALHLGHLVPFM---FT-KYLQDAFKVPLVIQLTDDE--KCMW----KNLSVEES-QRLARENAKD 151 (249)
Q Consensus 84 k~~~iYtG~-dPSg~sLHlGHlv~~~---~l-~~lQ~~g~~~v~i~IaD~~--k~~~----r~l~~e~i-~~~~~eni~~ 151 (249)
+++++-|.+ -|+| .+||||+.+.+ .+ |++...|...+++.=+|.| +... ...+.+++ .++..+..++
T Consensus 4 ~~~~it~~~py~ng-~~HiGH~~~~~~aDv~~R~~r~~G~~v~~~~g~D~~g~~i~~~A~~~g~~~~e~~d~~~~~fk~~ 82 (648)
T PRK12267 4 KTFYITTPIYYPNG-KPHIGHAYTTIAADALARYKRLQGYDVFFLTGTDEHGQKIQQAAEKAGKTPQEYVDEISAGFKEL 82 (648)
T ss_pred CCEEEeeCCCCCCC-CcccccchHHHHHHHHHHHHHhcCCceEeecCCCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 455555554 3556 99999987654 33 4454556555666666776 3322 12455443 3344455566
Q ss_pred HHHcCCCCC
Q 025688 152 IIACGFDVT 160 (249)
Q Consensus 152 iiA~G~dp~ 160 (249)
+.++|++.+
T Consensus 83 l~~lgI~~D 91 (648)
T PRK12267 83 WKKLDISYD 91 (648)
T ss_pred HHHcCCCCC
Confidence 667888665
No 71
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=86.53 E-value=1.5 Score=42.75 Aligned_cols=69 Identities=17% Similarity=0.275 Sum_probs=41.6
Q ss_pred CCCCCCccchhhHHHHhHHHHHHcCCCcEEEEecChhhhhccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEEcCcCC
Q 025688 93 GPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYV 171 (249)
Q Consensus 93 dPSg~sLHlGHlv~~~~l~~lQ~~g~~~v~i~IaD~~k~~~r~l~~e~i~~~~~eni~~iiA~G~dp~kt~i~~ns~~~ 171 (249)
-||| .|||||+..+++.--+.+..+..+++-|-|--.. | +.++.. .....++..+|++.+. .+++|+.+
T Consensus 10 SPTG-~lHiG~artAL~n~l~Ar~~gG~fiLRIEDTD~~--R--s~~~~~---~~I~e~L~wLGI~~De--~y~QSer~ 78 (445)
T PRK12558 10 SPTG-YLHVGNARTALLNWLYARKHGGKFILRIDDTDLE--R--SKQEYA---DAIAEDLKWLGINWDR--TFRQSDRF 78 (445)
T ss_pred CCCC-cccHHHHHHHHHHHHHHHHhCCEEEEEeccCCcc--c--chHHHH---HHHHHHHHHcCCCCCc--cccHHHHH
Confidence 5898 9999999998863223333335666767765421 1 112222 1334455668988774 57788765
No 72
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=86.49 E-value=2.1 Score=39.10 Aligned_cols=43 Identities=23% Similarity=0.293 Sum_probs=26.7
Q ss_pred eEEEecc-CCCCCCccchhhHHHH----hHHHHHHcCCCcEEEEecChh
Q 025688 86 FYLYTGR-GPSSEALHLGHLVPFM----FTKYLQDAFKVPLVIQLTDDE 129 (249)
Q Consensus 86 ~~iYtG~-dPSg~sLHlGHlv~~~----~l~~lQ~~g~~~v~i~IaD~~ 129 (249)
+++.+|. -|+| .+||||+.+.+ ..|++...|....++.-.|.|
T Consensus 2 ~~i~~~pP~~~g-~~HiGH~~~~i~~D~i~R~~r~~G~~v~~~~g~D~~ 49 (312)
T cd00668 2 FYVTTPPPYANG-SLHLGHALTHIIADFIARYKRMRGYEVPFLPGWDTH 49 (312)
T ss_pred EEEecCCCCCCC-CcchhHHHHHHHHHHHHHHHHhCCCCCCCCCccCCC
Confidence 3444443 3566 99999988653 245566667555566655665
No 73
>PF06543 Lac_bphage_repr: Lactococcus bacteriophage repressor; InterPro: IPR009498 This entry represents the C terminus of various Lactococcus bacteriophage repressor proteins.
Probab=84.25 E-value=0.81 Score=30.88 Aligned_cols=31 Identities=23% Similarity=0.508 Sum_probs=26.8
Q ss_pred CcccHHHHHHHhCCCCCCHHHHHHHHHhcCCC
Q 025688 26 GKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRP 57 (249)
Q Consensus 26 ~~~dy~kl~~~fg~~~i~~~~~~r~~~~~~~~ 57 (249)
..||+++++. ||-+||+++...-+..+.|++
T Consensus 16 ~kvdWd~wvS-f~GrPltdevK~a~k~i~~~~ 46 (49)
T PF06543_consen 16 PKVDWDKWVS-FDGRPLTDEVKEAMKLIFGKR 46 (49)
T ss_pred cccchHHhee-eCCeeCCHHHHHHHHHHHhhh
Confidence 3699999998 999999999988888887764
No 74
>KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=83.88 E-value=2.6 Score=42.19 Aligned_cols=75 Identities=21% Similarity=0.340 Sum_probs=46.9
Q ss_pred EEEeccCCCCCCccchhhHHHHhHHHHHHcCCCcEEEEecChhhhhccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEE
Q 025688 87 YLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFS 166 (249)
Q Consensus 87 ~iYtG~dPSg~sLHlGHlv~~~~l~~lQ~~g~~~v~i~IaD~~k~~~r~l~~e~i~~~~~eni~~iiA~G~dp~kt~i~~ 166 (249)
.+---=+||| -|||||.-..+...++|.+++..+++---|---. -..++... -..+++--+|+.|++..-
T Consensus 202 v~RFPPEpSG-yLHIGHAKAALLNqYfa~~~~G~LIvRFDDTNPa----KE~~eFe~---~IleDl~~LgIkpd~~Ty-- 271 (712)
T KOG1147|consen 202 VTRFPPEPSG-YLHIGHAKAALLNQYFAQAYQGKLIVRFDDTNPA----KENEEFED---VILEDLSLLGIKPDRVTY-- 271 (712)
T ss_pred EEecCCCCCc-eeehhhHHHHHHHHHHHHhcCceEEEEecCCCcc----hhhHHHHH---HHHHHHHHhCcCcceeee--
Confidence 3333347898 9999999999888899999987777665442210 11233331 223455558998875433
Q ss_pred cCcCC
Q 025688 167 DFDYV 171 (249)
Q Consensus 167 ns~~~ 171 (249)
-||+.
T Consensus 272 TSDyF 276 (712)
T KOG1147|consen 272 TSDYF 276 (712)
T ss_pred chhhH
Confidence 34443
No 75
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional
Probab=83.81 E-value=5.1 Score=39.57 Aligned_cols=76 Identities=18% Similarity=0.134 Sum_probs=47.5
Q ss_pred CceEEE-eccCCCCCCccchhhHHHH---hH-HHHHHcCCCcEEEE-ecCh----------h-hhhc----cCCCHH-HH
Q 025688 84 EKFYLY-TGRGPSSEALHLGHLVPFM---FT-KYLQDAFKVPLVIQ-LTDD----------E-KCMW----KNLSVE-ES 141 (249)
Q Consensus 84 k~~~iY-tG~dPSg~sLHlGHlv~~~---~l-~~lQ~~g~~~v~i~-IaD~----------~-k~~~----r~l~~e-~i 141 (249)
+.+.+| ||--+-. .+||||+.+.+ .+ |+++..|....+++ |+|- . |... ...++. -+
T Consensus 22 ~~v~mYvCGpTvy~-~~HiGhar~~v~~Dvl~R~l~~~G~~V~~v~NiTDv~hl~~~~De~ddKii~~A~~~g~~~~e~a 100 (490)
T PRK14536 22 GHVRLYGCGPTVYN-YAHIGNLRTYVFQDTLRRTLHFLGYRVTHVMNITDVGHLTDDADSGEDKMVKSAQEHGKSVLEIA 100 (490)
T ss_pred CceEEEeeCCccCC-CcccchhHHHHHHHHHHHHHHhcCCceEEEEeeccccccccCCcCCChHHHHHHHHcCCCHHHHH
Confidence 456776 6877776 99999976543 34 45665564444554 6666 2 4332 125554 45
Q ss_pred HHHHHHHHHHHHHcCCCCC
Q 025688 142 QRLARENAKDIIACGFDVT 160 (249)
Q Consensus 142 ~~~~~eni~~iiA~G~dp~ 160 (249)
.++..+..+++.++|+.+.
T Consensus 101 ~~~~~~f~~d~~~Lni~~~ 119 (490)
T PRK14536 101 AHYTAAFFRDTARLNIERP 119 (490)
T ss_pred HHHHHHHHHHHHHcCCCCC
Confidence 5566677888888998754
No 76
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases. Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=83.59 E-value=2 Score=40.04 Aligned_cols=44 Identities=16% Similarity=0.061 Sum_probs=26.3
Q ss_pred ceEEEecc-CCCCCCccchhhHHHH---h-HHHHHHcCCCcEEEEecChh
Q 025688 85 KFYLYTGR-GPSSEALHLGHLVPFM---F-TKYLQDAFKVPLVIQLTDDE 129 (249)
Q Consensus 85 ~~~iYtG~-dPSg~sLHlGHlv~~~---~-l~~lQ~~g~~~v~i~IaD~~ 129 (249)
+|.+.+|- -|+| .+||||+.+.. . .|++...|....++.=.|.|
T Consensus 2 ~f~i~~~pP~vnG-~lHiGHa~~~~~~Dvl~Ry~r~~G~~V~~~~g~D~h 50 (338)
T cd00818 2 EFVFHDGPPYANG-LPHYGHALNKILKDIINRYKTMQGYYVPRRPGWDCH 50 (338)
T ss_pred CeEEecCCCCCCC-CchHHHHHHHHHHHHHHHHHHhcCCccCCcCCcCCC
Confidence 45555554 3455 99999988653 2 34455556555555555654
No 77
>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases. Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine.
Probab=83.17 E-value=3.5 Score=35.71 Aligned_cols=70 Identities=11% Similarity=0.017 Sum_probs=39.5
Q ss_pred EeccCCCCCCccchhhHHHHh----HHHHHHcCCCcEEEEec-Chh-hhhccC---CCHHHHHHHH-HHHHHHHHHcCCC
Q 025688 89 YTGRGPSSEALHLGHLVPFMF----TKYLQDAFKVPLVIQLT-DDE-KCMWKN---LSVEESQRLA-RENAKDIIACGFD 158 (249)
Q Consensus 89 YtG~dPSg~sLHlGHlv~~~~----l~~lQ~~g~~~v~i~Ia-D~~-k~~~r~---l~~e~i~~~~-~eni~~iiA~G~d 158 (249)
|++==|++ .+||||+-+.+. .++|.-.|...+..... |.- ++...- ..+.++.... .+..+.+.++|+.
T Consensus 6 ~~spN~~~-~~HiGH~R~~vigD~l~R~l~~~G~~V~~~~~~~D~G~qi~~~a~~~~~~~~~~~~~~~~~~~~~~~L~i~ 84 (212)
T cd00671 6 FVSANPTG-PLHVGHLRNAIIGDSLARILEFLGYDVTREYYINDWGRQIGLLILSLEKWRKLVEESIKADLETYGRLDVR 84 (212)
T ss_pred ecCCCCCC-CccccccHHHHHHHHHHHHHHHCCCcEEEEeccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 56666887 999999886542 45666677655555544 444 332211 1123333222 3455666678876
Q ss_pred C
Q 025688 159 V 159 (249)
Q Consensus 159 p 159 (249)
+
T Consensus 85 ~ 85 (212)
T cd00671 85 F 85 (212)
T ss_pred C
Confidence 4
No 78
>cd02168 NMNAT_Nudix Nicotinamide/nicotinate mononucleotide adenylyltransferase of bifunctional proteins, also containing a Nudix hydrolase domain. N-terminal NMNAT (Nicotinamide/nicotinate mononucleotide adenylyltransferase) domain of a novel bifunctional enzyme endowed with NMN adenylyltransferase and Nudix hydrolase activities. This domain is highly homologous to the archeal NMN adenyltransferase that catalyzes NAD synthesis from NMN and ATP. NMNAT is an essential enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. The C-terminal domain of this enzyme shares homology with the archaeal ADP-ribose pyrophosphatase, a member of the 'Nudix' hydrolase family.
Probab=81.89 E-value=6.3 Score=33.63 Aligned_cols=74 Identities=19% Similarity=0.273 Sum_probs=43.8
Q ss_pred EEEeccCCCCCCccchhhHHHHhHHHHHHcCCCcEEEEecChh--hhhccCCCHHHHHHHHHHHHHHHHHcCCCCCceEE
Q 025688 87 YLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDE--KCMWKNLSVEESQRLARENAKDIIACGFDVTKTFI 164 (249)
Q Consensus 87 ~iYtG~dPSg~sLHlGHlv~~~~l~~lQ~~g~~~v~i~IaD~~--k~~~r~l~~e~i~~~~~eni~~iiA~G~dp~kt~i 164 (249)
.+|.|.- +.+|+||+-.+..... . .+ .++|+|+... +...++.+.++-.++.++.+ ...|+|.+++.|
T Consensus 2 ~l~~GrF---~P~H~GHl~~i~~a~~--~-~~-~vii~i~s~~~~~~~~~p~~~~eR~~mi~~~~---~~~~~~~~rv~i 71 (181)
T cd02168 2 LVYIGRF---QPFHNGHLAVVLIALE--K-AK-KVIILIGSARTARNIKNPWTSEEREVMIEAAL---SDAGADLARVHF 71 (181)
T ss_pred eEEeecc---CCCCHHHHHHHHHHHH--H-CC-eEEEEeCCCCCCCCCCCCcCHHHHHHHHHHHH---hccCCCcceEEE
Confidence 3566643 5689999876665333 2 32 5777776553 32223477777774443322 235888888888
Q ss_pred EEcCcC
Q 025688 165 FSDFDY 170 (249)
Q Consensus 165 ~~ns~~ 170 (249)
..=.|.
T Consensus 72 ~pi~D~ 77 (181)
T cd02168 72 RPLRDH 77 (181)
T ss_pred EecCCC
Confidence 764443
No 79
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=81.23 E-value=5.9 Score=41.64 Aligned_cols=91 Identities=18% Similarity=0.174 Sum_probs=48.1
Q ss_pred HHHhhccccccCChhHHHHHHHcCCceEEEeccC-CCCCCccchhhHHHH---hHHHHHHcCCCcEEEEecC-hhhh---
Q 025688 60 VFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRG-PSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQLTD-DEKC--- 131 (249)
Q Consensus 60 ~l~~Rgi~~~~~d~~~ll~~~e~~k~~~iYtG~d-PSg~sLHlGHlv~~~---~l~~lQ~~g~~~v~i~IaD-~~k~--- 131 (249)
...+.+++..-.+ .+++++++.+|+= ||| .||+||+.... .+.++++.-+..|....|- .|..
T Consensus 13 ~W~~~~~f~~~~~--------~~k~k~~v~~~pPy~nG-~lHiGH~~~~~~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie 83 (842)
T TIGR00396 13 KWKENKVFKFTDD--------SNKPKYYILDMFPYPSG-ALHMGHVRNYTITDVLSRYYRMKGYNVLHPMGWDAFGLPAE 83 (842)
T ss_pred HHHhcCCcccCCC--------CCCCCEEEEcCCCCCCC-ccccchhHHHHHHHHHHHHHHhcCCceeccCCcCCCChHHH
Confidence 4456666653221 2345688888853 346 89999988653 3445565544556555443 3321
Q ss_pred --h-ccCCCHH-HHHHHHHHHHHHHHHcCCCC
Q 025688 132 --M-WKNLSVE-ESQRLARENAKDIIACGFDV 159 (249)
Q Consensus 132 --~-~r~l~~e-~i~~~~~eni~~iiA~G~dp 159 (249)
. .+..+.. -+.++..+..+.+.++|+..
T Consensus 84 ~~a~~~g~~p~~~~~~~~~~~~~~~~~lG~~~ 115 (842)
T TIGR00396 84 NAAIKRGIHPAKWTYENIANMKKQLQALGFSY 115 (842)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHhCCcc
Confidence 1 1224443 23333334445556678643
No 80
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases. Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=80.89 E-value=4 Score=37.52 Aligned_cols=72 Identities=21% Similarity=0.204 Sum_probs=37.4
Q ss_pred EEEecc-CCCCCCccchhhHHHH---h-HHHHHHcCCCcEEEEecChh--hhh---cc-CCCHHHH-HHHHHHHHHHHHH
Q 025688 87 YLYTGR-GPSSEALHLGHLVPFM---F-TKYLQDAFKVPLVIQLTDDE--KCM---WK-NLSVEES-QRLARENAKDIIA 154 (249)
Q Consensus 87 ~iYtG~-dPSg~sLHlGHlv~~~---~-l~~lQ~~g~~~v~i~IaD~~--k~~---~r-~l~~e~i-~~~~~eni~~iiA 154 (249)
.+-++. -|+| .+||||+.+.+ . .|++...|....++.-.|.+ +.. .+ ..+..+. +++..+..+++.+
T Consensus 3 ~it~~~Py~ng-~~HiGH~~~~v~~Dv~~R~lr~~G~~V~~v~g~Dd~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~~~~ 81 (314)
T cd00812 3 YILVMFPYPSG-ALHVGHVRTYTIGDIIARYKRMQGYNVLFPMGFDAFGLPAENAAIKIGRDPEDWTEYNIKKMKEQLKR 81 (314)
T ss_pred EEecCCCCCCC-CccccchHHHHHHHHHHHHHHHcCCCcCCCCCcCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 344443 3555 89999987654 2 34555567555555555555 221 12 1444333 2233344455556
Q ss_pred cCCCC
Q 025688 155 CGFDV 159 (249)
Q Consensus 155 ~G~dp 159 (249)
+|+.+
T Consensus 82 lgi~~ 86 (314)
T cd00812 82 MGFSY 86 (314)
T ss_pred hccce
Confidence 77654
No 81
>PRK12418 cysteinyl-tRNA synthetase; Provisional
Probab=80.09 E-value=6.7 Score=37.56 Aligned_cols=72 Identities=21% Similarity=0.234 Sum_probs=44.4
Q ss_pred ceEEE-eccCCCCCCccchhhHHHH---hH-HHHHHcCCCcEEEEecChh--hhhc----cCCCHHHH-HHHHHHHHHHH
Q 025688 85 KFYLY-TGRGPSSEALHLGHLVPFM---FT-KYLQDAFKVPLVIQLTDDE--KCMW----KNLSVEES-QRLARENAKDI 152 (249)
Q Consensus 85 ~~~iY-tG~dPSg~sLHlGHlv~~~---~l-~~lQ~~g~~~v~i~IaD~~--k~~~----r~l~~e~i-~~~~~eni~~i 152 (249)
++.+| ||--|-+ .+||||+.+.+ .+ |+|...|....+++=.|++ |+.. ...+++++ +++..+..+++
T Consensus 9 ~v~~YvCGpTvY~-~~HIGh~r~~V~~Dvl~R~lr~~G~~V~~V~nitD~ddKIi~~A~~~G~~~~e~a~~~~~~f~~d~ 87 (384)
T PRK12418 9 TATMYVCGITPYD-ATHLGHAATYLAFDLVNRVWRDAGHDVHYVQNVTDVDDPLLERAARDGVDWRDLAEREIALFREDM 87 (384)
T ss_pred eeEEEecCCCCCC-CCccchhHHHHHHHHHHHHHHHcCCceEEEEecCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 44554 6777776 99999977654 33 4566666555666633333 4432 22566554 44555677788
Q ss_pred HHcCC
Q 025688 153 IACGF 157 (249)
Q Consensus 153 iA~G~ 157 (249)
.++|+
T Consensus 88 ~~Lni 92 (384)
T PRK12418 88 EALRV 92 (384)
T ss_pred HHhCC
Confidence 88886
No 82
>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional
Probab=79.67 E-value=7.6 Score=38.30 Aligned_cols=75 Identities=20% Similarity=0.169 Sum_probs=45.7
Q ss_pred ceEEE-eccCCCCCCccchhhHHHH---h-HHHHHHcCCCcEEEE-ecCh----------h-hhhc----cCCCHHH-HH
Q 025688 85 KFYLY-TGRGPSSEALHLGHLVPFM---F-TKYLQDAFKVPLVIQ-LTDD----------E-KCMW----KNLSVEE-SQ 142 (249)
Q Consensus 85 ~~~iY-tG~dPSg~sLHlGHlv~~~---~-l~~lQ~~g~~~v~i~-IaD~----------~-k~~~----r~l~~e~-i~ 142 (249)
.+.+| ||--+-. .+||||+.+++ . .|+|+..|....+++ |+|- . |+.. ...++.+ +.
T Consensus 21 ~v~mY~CGpTVYd-~~HiGh~r~~v~~Dvl~R~l~~~G~~V~~v~NiTDIghltg~~D~gddKIi~~A~~~g~~~~e~a~ 99 (481)
T PRK14534 21 DVKVYACGPTVYN-YAHIGNFRTYIFEDLLIKSLRLLKYNVNYAMNITDIGHLTGDFDDGEDKVVKAARERGLTVYEISR 99 (481)
T ss_pred ceEEEeCCCCCCC-CCCccchhHHHHHHHHHHHHHHcCCceEEEEeccccccccCCccCCCcHHHHHHHHcCCCHHHHHH
Confidence 46666 5666664 89999976654 3 355666664444444 6665 2 4332 1256544 45
Q ss_pred HHHHHHHHHHHHcCCCCC
Q 025688 143 RLARENAKDIIACGFDVT 160 (249)
Q Consensus 143 ~~~~eni~~iiA~G~dp~ 160 (249)
++..+..+++-++|+.+.
T Consensus 100 ~~~~~f~~d~~~Lni~~~ 117 (481)
T PRK14534 100 FFTEAFFDDCKKLNIVYP 117 (481)
T ss_pred HHHHHHHHHHHHcCCCCC
Confidence 566677778888898654
No 83
>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional
Probab=79.49 E-value=7.1 Score=36.48 Aligned_cols=71 Identities=18% Similarity=0.290 Sum_probs=41.5
Q ss_pred CceEEEeccCCCCCCccchhhHHHHhHHHHHHcCCCcEEEEecC--hhhhhccCCCHHHHHHHHHHHHHHHHHcCCCCCc
Q 025688 84 EKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTD--DEKCMWKNLSVEESQRLARENAKDIIACGFDVTK 161 (249)
Q Consensus 84 k~~~iYtG~dPSg~sLHlGHlv~~~~l~~lQ~~g~~~v~i~IaD--~~k~~~r~l~~e~i~~~~~eni~~iiA~G~dp~k 161 (249)
.++.+|.|.- +.+|+||+..+...... . ..++|+|+. ......++.+.++-.+ .++..++ +++..+
T Consensus 6 ~~~~~~~G~F---~P~H~GHl~~i~~a~~~---~-d~l~v~i~s~~~~~~~~~~~~~~~R~~----mi~~~~~-~~~~~r 73 (340)
T PRK05379 6 YDYLVFIGRF---QPFHNGHLAVIREALSR---A-KKVIVLIGSADLARSIKNPFSFEERAQ----MIRAALA-GIDLAR 73 (340)
T ss_pred ceEEEEeecc---CCCCHHHHHHHHHHHHH---C-CEEEEEEccCCCCCcCCCCCCHHHHHH----HHHHHhh-cCCCce
Confidence 4578888865 56999998776654332 3 357788863 2222223477777663 3443343 555555
Q ss_pred eEEEE
Q 025688 162 TFIFS 166 (249)
Q Consensus 162 t~i~~ 166 (249)
+.|.-
T Consensus 74 ~~~~p 78 (340)
T PRK05379 74 VTIRP 78 (340)
T ss_pred EEEEE
Confidence 55543
No 84
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione.
Probab=79.35 E-value=7.9 Score=37.43 Aligned_cols=73 Identities=21% Similarity=0.199 Sum_probs=44.2
Q ss_pred ceEEE-eccCCCCCCccchhhHHHH---hH-HHHHHcCCCcEEEEecChh--hhhc----cCCCHHH-HHHHHHHHHHHH
Q 025688 85 KFYLY-TGRGPSSEALHLGHLVPFM---FT-KYLQDAFKVPLVIQLTDDE--KCMW----KNLSVEE-SQRLARENAKDI 152 (249)
Q Consensus 85 ~~~iY-tG~dPSg~sLHlGHlv~~~---~l-~~lQ~~g~~~v~i~IaD~~--k~~~----r~l~~e~-i~~~~~eni~~i 152 (249)
.+.+| ||--|-+ .+||||+.+.+ .+ |+++..|....+++=.|+| |+.. ...++++ ++++..+..+++
T Consensus 36 ~v~~YvCGpTvY~-~~HIGhart~V~~Dvl~R~lr~~G~~V~fV~nitD~dDKIi~~A~~~g~t~~ela~~y~~~f~~d~ 114 (411)
T TIGR03447 36 EAGMYVCGITPYD-ATHLGHAATYLTFDLVNRVWRDAGHRVHYVQNVTDVDDPLFERAERDGVDWRELGTSQIDLFREDM 114 (411)
T ss_pred cceEEEeCCccCC-CcccccchHHHHHHHHHHHHHhcCCceEEeeCCCchhHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 34444 7888886 99999977654 33 4566566555555533333 5432 2256654 444555667778
Q ss_pred HHcCCC
Q 025688 153 IACGFD 158 (249)
Q Consensus 153 iA~G~d 158 (249)
.++|+.
T Consensus 115 ~~Lni~ 120 (411)
T TIGR03447 115 EALRVL 120 (411)
T ss_pred HHcCCC
Confidence 888864
No 85
>PRK01611 argS arginyl-tRNA synthetase; Reviewed
Probab=76.59 E-value=4.5 Score=39.84 Aligned_cols=76 Identities=20% Similarity=0.202 Sum_probs=43.4
Q ss_pred CceEE-EeccCCCCCCccchhhHHHHh----HHHHHHcCCCcEEEE-ecChhh-hh---ccC-CCHHHHHHHH-HHHHHH
Q 025688 84 EKFYL-YTGRGPSSEALHLGHLVPFMF----TKYLQDAFKVPLVIQ-LTDDEK-CM---WKN-LSVEESQRLA-RENAKD 151 (249)
Q Consensus 84 k~~~i-YtG~dPSg~sLHlGHlv~~~~----l~~lQ~~g~~~v~i~-IaD~~k-~~---~r~-l~~e~i~~~~-~eni~~ 151 (249)
+++.+ |||=-|+| .|||||+-..+. .+++...|+..+.+. ++|+-. +. ... ..++++.+.. .+..++
T Consensus 111 ~~v~Ie~~spnp~g-~lHiGH~R~~iigD~laR~lr~~G~~V~~~~~i~D~G~qi~~~a~~~~~~~~~~~~~~~~~~~~~ 189 (507)
T PRK01611 111 KKVVVEYVSANPTG-PLHVGHLRSAVIGDALARILEFAGYDVTREYYVNDAGTQIGMLIASLELLWRKAVDISLDEIKED 189 (507)
T ss_pred CEEEEEecCCCCCC-CCcCCchHHHHHHHHHHHHHHHcCCcEEEEeeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555 45889998 899999876542 345666676555554 777663 21 110 1233333333 244455
Q ss_pred HHHcCCCCC
Q 025688 152 IIACGFDVT 160 (249)
Q Consensus 152 iiA~G~dp~ 160 (249)
+..+|+..+
T Consensus 190 l~~LgI~~D 198 (507)
T PRK01611 190 LDRLGVHFD 198 (507)
T ss_pred HHHcCCeee
Confidence 666887653
No 86
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....
Probab=75.00 E-value=12 Score=37.72 Aligned_cols=43 Identities=14% Similarity=0.250 Sum_probs=26.2
Q ss_pred HcCCceEEEeccC-CCCCCccchhhHHHH---hHHHHHHcCCCcEEEE
Q 025688 81 EKGEKFYLYTGRG-PSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQ 124 (249)
Q Consensus 81 e~~k~~~iYtG~d-PSg~sLHlGHlv~~~---~l~~lQ~~g~~~v~i~ 124 (249)
.++++|++..|.= +|| .||+||.+... .+.++++.-+..|...
T Consensus 20 ~~~~~f~i~~~PPy~nG-~lH~GH~~~~~~~D~i~Ry~rm~G~~v~~~ 66 (601)
T PF00133_consen 20 KNKPKFFIHDPPPYANG-DLHIGHALNKTIKDIIARYKRMQGYNVLFP 66 (601)
T ss_dssp TTSGEEEEEE---BTSS-S-BHHHHHHHHHHHHHHHHHHCTTSEEEEE
T ss_pred CCCCcEEEEeCCCCCCC-cccHHHHHHHHHHHHHHHHHHhCCcEeCCC
Confidence 3467888888873 565 89999988664 3456666544555554
No 87
>PLN02610 probable methionyl-tRNA synthetase
Probab=74.01 E-value=6.9 Score=40.94 Aligned_cols=76 Identities=9% Similarity=0.017 Sum_probs=42.8
Q ss_pred CceEEEeccC-CCCCCccchhhHHH-H---hHHHHHHcCCCcEEEE-ecChhh--hhc----cCCCHHH-HHHHHHHHHH
Q 025688 84 EKFYLYTGRG-PSSEALHLGHLVPF-M---FTKYLQDAFKVPLVIQ-LTDDEK--CMW----KNLSVEE-SQRLARENAK 150 (249)
Q Consensus 84 k~~~iYtG~d-PSg~sLHlGHlv~~-~---~l~~lQ~~g~~~v~i~-IaD~~k--~~~----r~l~~e~-i~~~~~eni~ 150 (249)
++++|-|.+= |+| .+||||+.+. + .+.++++.-+..++++ =+|.|. ... ...++++ +.++......
T Consensus 17 ~~~~ITt~~pY~Ng-~~HlGH~~~~~l~aDv~aRy~r~~G~~v~f~~GtDehG~~i~~~A~~~g~~p~e~~d~~~~~~~~ 95 (801)
T PLN02610 17 RNILITSALPYVNN-VPHLGNIIGCVLSADVFARYCRLRGYNAIYICGTDEYGTATETKALEENCTPKEICDKYHAIHKE 95 (801)
T ss_pred CCEEEeCCCCCCCC-CcccchhhhhHHHHHHHHHHHHhCCCceEecccccCCcHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 4677777764 565 8999999852 2 3445555433455555 555562 221 1245544 4444444445
Q ss_pred HHHHcCCCCC
Q 025688 151 DIIACGFDVT 160 (249)
Q Consensus 151 ~iiA~G~dp~ 160 (249)
.+.++|++.+
T Consensus 96 ~~~~l~i~~D 105 (801)
T PLN02610 96 VYDWFDISFD 105 (801)
T ss_pred HHHHcCCccc
Confidence 5677887765
No 88
>KOG1148 consensus Glutaminyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=72.49 E-value=11 Score=38.25 Aligned_cols=99 Identities=25% Similarity=0.287 Sum_probs=61.2
Q ss_pred EEEecc--CCCCCCccchhhHHHHhHHHHHHcCCCcEEEEecC--hhhhhccCCCHHHHHHHHHHHHHHHHH-cCCCCCc
Q 025688 87 YLYTGR--GPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTD--DEKCMWKNLSVEESQRLARENAKDIIA-CGFDVTK 161 (249)
Q Consensus 87 ~iYtG~--dPSg~sLHlGHlv~~~~l~~lQ~~g~~~v~i~IaD--~~k~~~r~l~~e~i~~~~~eni~~iiA-~G~dp~k 161 (249)
.++|-| +|-| -|||||.=.+..---+.++.+..|++---| |++. .++.- +-|+++.+ +|++|-|
T Consensus 248 kV~TRFPPEPNG-~LHIGHaKAInvNFgyAk~~~G~cyLRfDDTNPEkE------ee~yf----~sI~e~V~WLG~~P~k 316 (764)
T KOG1148|consen 248 KVVTRFPPEPNG-ILHIGHAKAINVNFGYAKAHGGVCYLRFDDTNPEKE------EEEYF----ESIKEMVAWLGFEPYK 316 (764)
T ss_pred eeEEeCCCCCCc-eeeecchhheeechhhhhhhCCeEEEecCCCCcchh------hHHHH----HHHHHHHHHhCCCcee
Confidence 467766 6787 999999876665333445444566665443 2221 11222 45666666 7999865
Q ss_pred eEEEEcCcCCCcccHHHHHHH-------hccCCHHHHHHhhCCCC
Q 025688 162 TFIFSDFDYVGGAFYKNMVKV-------AKCVTYNKVVGIFGFTG 199 (249)
Q Consensus 162 t~i~~ns~~~~~~~~~~~l~l-------~k~~tv~~m~~~~gf~~ 199 (249)
+ -..||+.+ .+|+.+..+ -+|-|..+++..-|++.
T Consensus 317 v--TysSDyFd-qLy~~av~LIrkG~AYVcHqt~eEik~~rg~~~ 358 (764)
T KOG1148|consen 317 V--TYSSDYFD-QLYELAVELIRKGKAYVCHQTAEEIKERRGFNE 358 (764)
T ss_pred e--ecchhHHH-HHHHHHHHHHhcCceeEEeccHHHHHhhcCCCC
Confidence 4 55677764 566665542 24788889997777653
No 89
>KOG0435 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=72.36 E-value=4 Score=41.87 Aligned_cols=60 Identities=22% Similarity=0.280 Sum_probs=39.4
Q ss_pred hhHHHhhccccccCChhHHHHHHHcCCceEEEecc-CCCCCCccchhhH---HHHhHHHHHHcCCCcEEEEec
Q 025688 58 PHVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGR-GPSSEALHLGHLV---PFMFTKYLQDAFKVPLVIQLT 126 (249)
Q Consensus 58 ~~~l~~Rgi~~~~~d~~~ll~~~e~~k~~~iYtG~-dPSg~sLHlGHlv---~~~~l~~lQ~~g~~~v~i~Ia 126 (249)
=+....+|..+.. +.-.++++ |+.+-| -||| .||+||.. -...+.+||+.-+..|+=-+|
T Consensus 39 W~~~~~~~~~~~~-------~~d~sk~K-YiLsMFPYPSG-~LHiGHvRVYTIsD~laRf~rm~GynVihPMG 102 (876)
T KOG0435|consen 39 WKQYLKDGFPFSK-------DSDKSKKK-YILSMFPYPSG-ALHIGHVRVYTISDILARFYRMKGYNVIHPMG 102 (876)
T ss_pred HHHHHhcCCcccc-------ccccCCCc-eEEEecCCCCC-cccccceEEEEehHHHHHHHHhcCceeecCCc
Confidence 3556777777754 12233555 999988 5898 89999954 344577888876555544344
No 90
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases. Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=71.59 E-value=15 Score=34.88 Aligned_cols=44 Identities=20% Similarity=0.113 Sum_probs=25.9
Q ss_pred ceEEEeccC-CCCCCccchhhHHHH---hHHHHHH-cCCCcEEEEecChh
Q 025688 85 KFYLYTGRG-PSSEALHLGHLVPFM---FTKYLQD-AFKVPLVIQLTDDE 129 (249)
Q Consensus 85 ~~~iYtG~d-PSg~sLHlGHlv~~~---~l~~lQ~-~g~~~v~i~IaD~~ 129 (249)
++++-+|.= |+| .+||||+.+.. .+.++++ .|+..+++.=.|.|
T Consensus 2 ~f~i~~~pPy~nG-~lHiGH~~~~~~~Dv~~Ry~r~~G~~V~~~~G~D~h 50 (382)
T cd00817 2 VFVIDTPPPNVTG-SLHMGHALNNTIQDIIARYKRMKGYNVLWPPGTDHA 50 (382)
T ss_pred cEEEecCCCCCCC-cchHHHHHHHHHHHHHHHHHHhcCCcccccCccCCC
Confidence 355555543 565 89999988654 2344444 46444455555665
No 91
>PLN02946 cysteine-tRNA ligase
Probab=71.47 E-value=20 Score=36.11 Aligned_cols=74 Identities=20% Similarity=0.191 Sum_probs=45.3
Q ss_pred CceEEE-eccCCCCCCccchhhHHHH---hH-HHHHHcCCCcEEEE-ecChh-hhhc----cCCCHHH-HHHHHHHHHHH
Q 025688 84 EKFYLY-TGRGPSSEALHLGHLVPFM---FT-KYLQDAFKVPLVIQ-LTDDE-KCMW----KNLSVEE-SQRLARENAKD 151 (249)
Q Consensus 84 k~~~iY-tG~dPSg~sLHlGHlv~~~---~l-~~lQ~~g~~~v~i~-IaD~~-k~~~----r~l~~e~-i~~~~~eni~~ 151 (249)
+.+.+| ||--+-+ ..||||+.+++ .+ |+|...|....+++ ++|-- |+.. ...++.+ ++++..+..++
T Consensus 79 ~~v~~Y~CGpTvYd-~~HIGhaR~~V~~Dvl~R~Lr~~Gy~V~~V~niTDiDDKIi~~A~~~g~~~~ela~~y~~~f~~d 157 (557)
T PLN02946 79 GKVGMYVCGVTAYD-LSHIGHARVYVTFDVLYRYLKHLGYEVRYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFLSD 157 (557)
T ss_pred CceeEEEeCCccCC-CCccccchhhHHHHHHHHHHHhcCCcEEEEECCCCccCHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 456666 6777776 99999976553 34 45666665555555 44433 5432 2356654 45555667778
Q ss_pred HHHcCCC
Q 025688 152 IIACGFD 158 (249)
Q Consensus 152 iiA~G~d 158 (249)
+.++|+.
T Consensus 158 ~~~LnI~ 164 (557)
T PLN02946 158 MAYLHCL 164 (557)
T ss_pred HHHCCCC
Confidence 8888875
No 92
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=70.72 E-value=15 Score=37.63 Aligned_cols=76 Identities=26% Similarity=0.386 Sum_probs=44.5
Q ss_pred CCceEEE-eccCCCCCCccchhhH---HHHhHH-HHHHcCCCcEE-EE-ecChh-hhhcc----CCC-H-HHHHHHHHHH
Q 025688 83 GEKFYLY-TGRGPSSEALHLGHLV---PFMFTK-YLQDAFKVPLV-IQ-LTDDE-KCMWK----NLS-V-EESQRLAREN 148 (249)
Q Consensus 83 ~k~~~iY-tG~dPSg~sLHlGHlv---~~~~l~-~lQ~~g~~~v~-i~-IaD~~-k~~~r----~l~-~-e~i~~~~~en 148 (249)
++.+.+| ||--+-. ..||||+- .+..++ +|++..+..|. ++ |+|-- |+..+ .++ + +-++++..+.
T Consensus 58 ~~~v~~Y~CGPTvYd-~~HiGhart~v~~Dil~R~l~~~~Gy~V~~v~nitDidDKIi~~A~~~g~~~~~el~~~~~~~f 136 (651)
T PTZ00399 58 GRQVRWYTCGPTVYD-SSHLGHARTYVTFDIIRRILEDYFGYDVFYVMNITDIDDKIIKRAREEKLSIFLELARKWEKEF 136 (651)
T ss_pred CCeeEEEEeCCCccC-CcccccchHHHHHHHHHHHHHHhcCCceEEEeCCCCcchHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 3455555 5666664 99999955 444444 45534444444 44 55544 54332 255 4 4455566677
Q ss_pred HHHHHHcCCCC
Q 025688 149 AKDIIACGFDV 159 (249)
Q Consensus 149 i~~iiA~G~dp 159 (249)
.+++.++|+.+
T Consensus 137 ~~d~~~Lni~~ 147 (651)
T PTZ00399 137 FEDMKALNVRP 147 (651)
T ss_pred HHHHHHcCCCC
Confidence 78888888764
No 93
>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional
Probab=68.88 E-value=22 Score=36.69 Aligned_cols=77 Identities=21% Similarity=0.264 Sum_probs=47.0
Q ss_pred CCceEEE-eccCCCCCCccchhhHHHH---hH-HHHHHcCCCcEEEE-ecChh-hhhc----cCCCHHH-HHHHHHHHHH
Q 025688 83 GEKFYLY-TGRGPSSEALHLGHLVPFM---FT-KYLQDAFKVPLVIQ-LTDDE-KCMW----KNLSVEE-SQRLARENAK 150 (249)
Q Consensus 83 ~k~~~iY-tG~dPSg~sLHlGHlv~~~---~l-~~lQ~~g~~~v~i~-IaD~~-k~~~----r~l~~e~-i~~~~~eni~ 150 (249)
.+.+.+| ||--+-. ..||||+.+++ .+ |+|...|....+++ ++|-- |+.. ...++.+ +.++..+..+
T Consensus 246 ~~~V~mYvCGPTVYd-~~HIGHaRt~V~~DVL~R~Lr~~Gy~V~fV~NiTD~DDKII~~A~e~G~sp~ela~~y~~~F~~ 324 (699)
T PRK14535 246 PENVRMYVCGMTVYD-YCHLGHARVMVVFDMIARWLRECGYPLTYVRNITDIDDKIIARAAENGETIGELTARFIQAMHE 324 (699)
T ss_pred CCceEEEecCCcCCC-CCcccchhHHHHHHHHHHHHHHcCCceEEEeCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 3456666 6777775 99999976554 34 45555564444555 44433 5432 2256554 4455567778
Q ss_pred HHHHcCCCCC
Q 025688 151 DIIACGFDVT 160 (249)
Q Consensus 151 ~iiA~G~dp~ 160 (249)
++.++|+.+.
T Consensus 325 d~~~LnI~~p 334 (699)
T PRK14535 325 DADALGVLRP 334 (699)
T ss_pred HHHHcCCCCC
Confidence 8888998754
No 94
>PRK13793 nicotinamide-nucleotide adenylyltransferase; Provisional
Probab=66.28 E-value=34 Score=29.80 Aligned_cols=74 Identities=15% Similarity=0.244 Sum_probs=43.1
Q ss_pred ceEEEeccCCCCCCccchhhHHHHhHHHHHHcCCCcEEEEecChh--hhhccCCCHHHHHHHHHHHHHHHHHcCCCCCce
Q 025688 85 KFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDE--KCMWKNLSVEESQRLARENAKDIIACGFDVTKT 162 (249)
Q Consensus 85 ~~~iYtG~dPSg~sLHlGHlv~~~~l~~lQ~~g~~~v~i~IaD~~--k~~~r~l~~e~i~~~~~eni~~iiA~G~dp~kt 162 (249)
...+|.|+- ..+|+||+-.+... +.++- .++|.||=-. ....++.+..+-..+.+.++.. .+..++
T Consensus 5 d~~v~iGRF---QPfH~GHl~~I~~a--l~~~d--evII~IGSA~~s~t~~NPFTa~ER~~MI~~aL~e-----~~~~rv 72 (196)
T PRK13793 5 DYLVFIGRF---QPFHLAHMQTIEIA--LQQSR--YVILALGSAQMERNIKNPFLAIEREQMILSNFSL-----DEQKRI 72 (196)
T ss_pred eEEEEEecC---CCCcHHHHHHHHHH--HHhCC--EEEEEEccCCCCCCCCCCCCHHHHHHHHHHhcch-----hhcceE
Confidence 467899976 56999998655432 34433 4677776544 3344558887766444444322 133466
Q ss_pred EEEEcCcC
Q 025688 163 FIFSDFDY 170 (249)
Q Consensus 163 ~i~~ns~~ 170 (249)
.|.--.|.
T Consensus 73 ~~ipi~D~ 80 (196)
T PRK13793 73 RFVHVVDV 80 (196)
T ss_pred EEEecCCc
Confidence 55544443
No 95
>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=65.12 E-value=18 Score=35.60 Aligned_cols=72 Identities=24% Similarity=0.255 Sum_probs=47.8
Q ss_pred eEEE-eccCCCCCCccchhhH---HHHh-HHHHHHcCCCcEEEE-ecChh-hhhcc----CCCHHHHH-HHHHHHHHHHH
Q 025688 86 FYLY-TGRGPSSEALHLGHLV---PFMF-TKYLQDAFKVPLVIQ-LTDDE-KCMWK----NLSVEESQ-RLARENAKDII 153 (249)
Q Consensus 86 ~~iY-tG~dPSg~sLHlGHlv---~~~~-l~~lQ~~g~~~v~i~-IaD~~-k~~~r----~l~~e~i~-~~~~eni~~ii 153 (249)
+.+| ||--+-- ..||||.- .+.. .|+|+..|....+++ |+|-. |+..| ..++.++- ++..+..++.-
T Consensus 23 V~mYvCGpTVYd-~~HIGhaRt~V~fDvl~R~L~~~Gy~V~yV~NiTDIDDKIi~rA~~~g~~~~ev~~~~i~~f~~D~~ 101 (464)
T COG0215 23 VKMYVCGPTVYD-YAHIGHARTYVVFDVLRRYLRYLGYKVTYVRNITDIDDKIINRAREEGLSIREVAERYIAAFFEDMD 101 (464)
T ss_pred EEEEecCCccCC-ccccccCcceehHHHHHHHHHHhCCeEEEEeccccccHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 6776 6777774 99999954 4443 457888885445555 99977 76543 24565543 45557777888
Q ss_pred HcCCC
Q 025688 154 ACGFD 158 (249)
Q Consensus 154 A~G~d 158 (249)
|+|+-
T Consensus 102 aL~v~ 106 (464)
T COG0215 102 ALNVL 106 (464)
T ss_pred HhCCC
Confidence 88874
No 96
>cd02166 NMNAT_Archaea Nicotinamide/nicotinate mononucleotide adenylyltransferase, archaeal. This family of archaeal proteins exhibits nicotinamide-nucleotide adenylyltransferase (NMNAT) activity utilizing the salvage pathway to synthesize NAD. In some cases, the enzyme was tested and found also to have the activity of nicotinate-nucleotide adenylyltransferase an enzyme of NAD de novo biosynthesis, although with a higher Km. In some archaeal species, a number of proteins which are uncharacterized with respect to activity, are also present.
Probab=64.73 E-value=54 Score=27.23 Aligned_cols=72 Identities=21% Similarity=0.304 Sum_probs=38.6
Q ss_pred EEeccCCCCCCccchhhHHHHhHHHHHHcCCCcEEEEecChh-hhh-ccCCCHHHHHHHHHHHHHHHHH-cCCCCCceEE
Q 025688 88 LYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDE-KCM-WKNLSVEESQRLARENAKDIIA-CGFDVTKTFI 164 (249)
Q Consensus 88 iYtG~dPSg~sLHlGHlv~~~~l~~lQ~~g~~~v~i~IaD~~-k~~-~r~l~~e~i~~~~~eni~~iiA-~G~dp~kt~i 164 (249)
+|.|.- +.+|+||+..+...... . ..++++|+-.. ... ..+.+.++-. +.++..++ .|++-+++.+
T Consensus 3 v~~G~F---dP~H~GHl~~i~~a~~~---~-d~l~v~v~s~~~~~~~~~~~~~~~R~----~mi~~~~~~~~~~~~~v~v 71 (163)
T cd02166 3 LFIGRF---QPFHLGHLKVIKWILEE---V-DELIIGIGSAQESHTLENPFTAGERV----LMIRRALEEEGIDLSRYYI 71 (163)
T ss_pred EEeecc---CCCCHHHHHHHHHHHHH---C-CEEEEEecCCCCCCCCCCCCCHHHHH----HHHHHHHHhcCCCcCeEEE
Confidence 555633 56999998766654333 3 24666564332 222 2236666544 33443322 3555667777
Q ss_pred EEcCcC
Q 025688 165 FSDFDY 170 (249)
Q Consensus 165 ~~ns~~ 170 (249)
....++
T Consensus 72 ~~~~d~ 77 (163)
T cd02166 72 IPVPDI 77 (163)
T ss_pred EecCCC
Confidence 766554
No 97
>PLN02563 aminoacyl-tRNA ligase
Probab=63.43 E-value=25 Score=37.68 Aligned_cols=46 Identities=24% Similarity=0.294 Sum_probs=29.3
Q ss_pred CCceEEEeccC-CCCCC-ccchhhHHHH---hHHHHHHcCCCcEEEEecChh
Q 025688 83 GEKFYLYTGRG-PSSEA-LHLGHLVPFM---FTKYLQDAFKVPLVIQLTDDE 129 (249)
Q Consensus 83 ~k~~~iYtG~d-PSg~s-LHlGHlv~~~---~l~~lQ~~g~~~v~i~IaD~~ 129 (249)
++++++.+|+= ||| . ||+||+.... .+.++++.-+..|....|=++
T Consensus 109 k~k~~v~~~~PYpnG-~~lHiGH~~~y~~~DviaRy~Rm~G~~Vl~~~G~D~ 159 (963)
T PLN02563 109 KPKFYVLDMFPYPSG-AGLHVGHPEGYTATDILARYKRMQGYNVLHPMGWDA 159 (963)
T ss_pred CCCEEEEeCCCCCCC-cccchhhHHHHHHHHHHHHHHHhcCCeecccccccc
Confidence 56689999973 344 4 9999987543 345566554456666655444
No 98
>PLN02943 aminoacyl-tRNA ligase
Probab=61.18 E-value=13 Score=39.77 Aligned_cols=62 Identities=18% Similarity=0.232 Sum_probs=39.5
Q ss_pred hHHHhhccccccCChhHHHHHHHcCCceEEEec-cCCCCCCccchhhHHHH---hHHHHHHcCCCcEEEEecChh
Q 025688 59 HVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTG-RGPSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQLTDDE 129 (249)
Q Consensus 59 ~~l~~Rgi~~~~~d~~~ll~~~e~~k~~~iYtG-~dPSg~sLHlGHlv~~~---~l~~lQ~~g~~~v~i~IaD~~ 129 (249)
....+.|++....+ .++++|.+.+| =-+|| .||+||.+... .+.++++.-+..+....|=+|
T Consensus 71 ~~W~~~~~f~~~~~--------~~~~~f~i~~pPP~~tG-~lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~~G~D~ 136 (958)
T PLN02943 71 NWWESQGYFKPNFD--------RGGDPFVIPMPPPNVTG-SLHMGHAMFVTLEDIMVRYNRMKGRPTLWIPGTDH 136 (958)
T ss_pred HHHHHCCCcccCcc--------cCCCCEEEecCCCCCCC-chhHHHHHHHHHHHHHHHHHHhcCCeeecCCCCCc
Confidence 35567777765432 23567888888 67888 89999988553 344555544455555555554
No 99
>PRK13208 valS valyl-tRNA synthetase; Reviewed
Probab=58.36 E-value=10 Score=39.44 Aligned_cols=62 Identities=19% Similarity=0.306 Sum_probs=37.5
Q ss_pred hHHHhhccccccCChhHHHHHHHcCCceEEEec-cCCCCCCccchhhHHHH---hHHHHHHcCCCcEEEEecChh
Q 025688 59 HVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTG-RGPSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQLTDDE 129 (249)
Q Consensus 59 ~~l~~Rgi~~~~~d~~~ll~~~e~~k~~~iYtG-~dPSg~sLHlGHlv~~~---~l~~lQ~~g~~~v~i~IaD~~ 129 (249)
....+.|++....+ .+++++.+.+| --||| .|||||+.... .+.++++.-+..|....|=+|
T Consensus 21 ~~W~~~~~f~~~~~--------~~~~~f~i~~ppPy~nG-~lHiGH~~~~~~~D~~~R~~r~~G~~v~~~~G~D~ 86 (800)
T PRK13208 21 KIWEEEGTYKFDPD--------ERKPVYSIDTPPPTVSG-SLHIGHVFSYTHTDFIARYQRMRGYNVFFPQGWDD 86 (800)
T ss_pred HHHHHCCCcccccc--------cCCCcEEEecCcCCCCC-CccHHHHHhHHHHHHHHHHHHcCCCcccCCCCcCC
Confidence 34566777764321 12567888884 45777 89999988654 344555544455555545443
No 100
>PF06574 FAD_syn: FAD synthetase; InterPro: IPR015864 Riboflavin is converted into catalytically active cofactors (FAD and FMN) by the actions of riboflavin kinase (2.7.1.26 from EC), which converts it into FMN, and FAD synthetase (2.7.7.2 from EC), which adenylates FMN to FAD. Eukaryotes usually have two separate enzymes, while most prokaryotes have a single bifunctional protein that can carry out both catalyses, although exceptions occur in both cases. While eukaryotic monofunctional riboflavin kinase is orthologous to the bifunctional prokaryotic enzyme [], the monofunctional FAD synthetase differs from its prokaryotic counterpart, and is instead related to the PAPS-reductase family []. The bacterial FAD synthetase that is part of the bifunctional enzyme has remote similarity to nucleotidyl transferases and, hence, it may be involved in the adenylylation reaction of FAD synthetases []. This entry represents prokaryotic-type FAD synthetase, which occurs primarily as part of a bifunctional enzyme.; GO: 0003919 FMN adenylyltransferase activity, 0009231 riboflavin biosynthetic process; PDB: 2X0K_B 3OP1_B 1T6Z_A 2I1L_A 1T6Y_B 1T6X_B 1S4M_A 1MRZ_A.
Probab=58.18 E-value=14 Score=30.66 Aligned_cols=44 Identities=18% Similarity=0.151 Sum_probs=27.5
Q ss_pred CCceEEEeccCCCCCCccchhhHHHHhHHHHHHcCCCcEEEEecChh
Q 025688 83 GEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDE 129 (249)
Q Consensus 83 ~k~~~iYtG~dPSg~sLHlGHlv~~~~l~~lQ~~g~~~v~i~IaD~~ 129 (249)
.++..+-.|.- +.+|+||---+-.++...+.-+.+.+++.=|+|
T Consensus 4 ~~~~~v~iG~F---DGvH~GHq~Li~~~~~~a~~~~~~~~v~tF~~~ 47 (157)
T PF06574_consen 4 NKKSVVAIGNF---DGVHLGHQKLIKKAVEIAKEKGLKSVVLTFDPH 47 (157)
T ss_dssp -S-EEEEES-----TT--HHHHHHHHHHHHHHHHCT-EEEEEEESS-
T ss_pred CCCcEEEEeCC---CCccHHHHHHHHHHhhhhhhcccceEEEEcccC
Confidence 45667777765 689999998888877776666577777777777
No 101
>KOG2007 consensus Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=58.14 E-value=44 Score=33.39 Aligned_cols=73 Identities=30% Similarity=0.471 Sum_probs=44.9
Q ss_pred CCceEEEeccCCCC-CCccchh---hHHHHhHH-HHHHcCCCcEEEE--ecChh-hhhcc---------CCCHHHH-HHH
Q 025688 83 GEKFYLYTGRGPSS-EALHLGH---LVPFMFTK-YLQDAFKVPLVIQ--LTDDE-KCMWK---------NLSVEES-QRL 144 (249)
Q Consensus 83 ~k~~~iYtG~dPSg-~sLHlGH---lv~~~~l~-~lQ~~g~~~v~i~--IaD~~-k~~~r---------~l~~e~i-~~~ 144 (249)
+++++.|+ -+||. ++-|+|| ||.+..++ .|++.++..|.++ |+|-- |+..| ++++++. +.|
T Consensus 53 ~~~v~wY~-CGpTvYD~SHmGHArsYVsfDIlrRiL~dyfgy~V~~vmNiTDVDDKII~RAr~~~m~e~~~~l~~~F~~~ 131 (586)
T KOG2007|consen 53 GNKVTWYI-CGPTVYDSSHMGHARSYVSFDILRRILRDYFGYDVTFVMNITDVDDKIIKRARKEEMGEKPLSLSERFCYY 131 (586)
T ss_pred CCeEEEEE-ecCcccchhhhhhhhhhhhHHHHHHHHHHHcCcceEEEecccchhHHHHHHhhhhhhccchhhHHHHHHHH
Confidence 56677775 34553 6899999 67776655 5898888877666 88866 64432 2455554 223
Q ss_pred HHHHHHHHHHcC
Q 025688 145 ARENAKDIIACG 156 (249)
Q Consensus 145 ~~eni~~iiA~G 156 (249)
-.+...|..++.
T Consensus 132 e~eF~~DM~~Ln 143 (586)
T KOG2007|consen 132 EEEFLQDMAALN 143 (586)
T ss_pred HHHHHHHHHHhC
Confidence 334445555543
No 102
>TIGR00422 valS valyl-tRNA synthetase. The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase.
Probab=58.05 E-value=15 Score=38.53 Aligned_cols=62 Identities=13% Similarity=0.205 Sum_probs=39.4
Q ss_pred hHHHhhccccccCChhHHHHHHHcCCceEEEeccC-CCCCCccchhhHHHH---hHHHHHHcCCCcEEEEecChh
Q 025688 59 HVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRG-PSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQLTDDE 129 (249)
Q Consensus 59 ~~l~~Rgi~~~~~d~~~ll~~~e~~k~~~iYtG~d-PSg~sLHlGHlv~~~---~l~~lQ~~g~~~v~i~IaD~~ 129 (249)
....+.|+|....+ .++++|++++|.= +|| .||+||++... .+.++++.-+..+....|-+|
T Consensus 16 ~~W~~~~~f~~~~~--------~~~~~f~i~~ppPy~nG-~lHiGH~~~~~~~D~~~Ry~rm~G~~vl~~~G~D~ 81 (861)
T TIGR00422 16 KKWEKSGFFKPDGN--------SNKPPFCIDIPPPNVTG-SLHIGHALNWSIQDIIARYKRMKGYNVLWLPGTDH 81 (861)
T ss_pred HHHHHCCCcccCcc--------cCCCeEEEEeCCCCCCC-CCcHHHhHHHHHHHHHHHHHHhcCCcccCCCCcCc
Confidence 45677888765322 2356799999874 566 99999988553 344566554455555555444
No 103
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=57.12 E-value=8.5 Score=40.60 Aligned_cols=36 Identities=14% Similarity=0.215 Sum_probs=25.5
Q ss_pred CCCCCccchhhHHH---HhHHHHHHcCCCcEEEEecChhh
Q 025688 94 PSSEALHLGHLVPF---MFTKYLQDAFKVPLVIQLTDDEK 130 (249)
Q Consensus 94 PSg~sLHlGHlv~~---~~l~~lQ~~g~~~v~i~IaD~~k 130 (249)
+|| +||+||.+.. ..+.++++.-+..+..+-|=+|+
T Consensus 44 VTG-~LHmGHAl~~tl~D~l~RykRM~G~~vl~~pG~DhA 82 (877)
T COG0525 44 VTG-SLHMGHALNYTLQDILARYKRMRGYNVLWPPGTDHA 82 (877)
T ss_pred CCC-cccchhhhhHHHHHHHHHHHHcCCCeeecCCCCCCC
Confidence 488 9999998844 24667777655777777666663
No 104
>TIGR02199 rfaE_dom_II rfaE bifunctional protein, domain II. RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in E. coli, and separate proteins in some other genome. Domain I (TIGR02198) is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (this family) adds ADP to yield ADP-D-glycero-D-manno-heptose.
Probab=55.97 E-value=64 Score=26.15 Aligned_cols=42 Identities=24% Similarity=0.214 Sum_probs=27.8
Q ss_pred CCceEEEeccCCCCCCccchhhHHHHhHHHHHHcCCCcEEEEecChhh
Q 025688 83 GEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEK 130 (249)
Q Consensus 83 ~k~~~iYtG~dPSg~sLHlGHlv~~~~l~~lQ~~g~~~v~i~IaD~~k 130 (249)
+++..+-.|.- +-+|+||.--+..++.+ ++..++.+-.|++.
T Consensus 10 ~~~~v~~~G~F---DgvH~GH~~ll~~a~~~---~~~~~v~v~~d~~~ 51 (144)
T TIGR02199 10 GKKIVFTNGCF---DILHAGHVSYLQQARAL---GDRLVVGVNSDASV 51 (144)
T ss_pred CCCEEEEeCcc---cccCHHHHHHHHHHHHh---CCccEEEEECCcCH
Confidence 45666666765 68999997766555443 43446666788883
No 105
>TIGR00456 argS arginyl-tRNA synthetase. This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori.
Probab=54.89 E-value=15 Score=36.66 Aligned_cols=42 Identities=19% Similarity=0.235 Sum_probs=29.0
Q ss_pred EEEeccCCCCCCccchhhHHHH----hHHHHHHcCCCcEEE-EecChh
Q 025688 87 YLYTGRGPSSEALHLGHLVPFM----FTKYLQDAFKVPLVI-QLTDDE 129 (249)
Q Consensus 87 ~iYtG~dPSg~sLHlGHlv~~~----~l~~lQ~~g~~~v~i-~IaD~~ 129 (249)
.=||+==|++ .|||||+-..+ ..+++.-.|+..+-. .|+|+=
T Consensus 116 ve~~spn~~~-~~hiGh~r~~~~gd~l~r~~~~~g~~v~r~~yinD~G 162 (566)
T TIGR00456 116 IEFSSANPAG-PLHIGHLRNAIIGDSLARILEFLGYDVIREYYVNDWG 162 (566)
T ss_pred EEecCCCCCC-CCchhhhHHHHHHHHHHHHHHHCCCCeeEEeeecchH
Confidence 3478888998 89999988665 245566667544333 388865
No 106
>PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the core region of arginyl-tRNA synthetase (6.1.1.19 from EC), which has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available []. ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1IQ0_A 1F7V_A 1F7U_A 1BS2_A 3GDZ_B.
Probab=53.24 E-value=15 Score=34.54 Aligned_cols=39 Identities=23% Similarity=0.348 Sum_probs=23.6
Q ss_pred EeccCCCCCCccchhhHHHHh---HHH-HHHcCCCcEEEE--ecChh
Q 025688 89 YTGRGPSSEALHLGHLVPFMF---TKY-LQDAFKVPLVIQ--LTDDE 129 (249)
Q Consensus 89 YtG~dPSg~sLHlGHlv~~~~---l~~-lQ~~g~~~v~i~--IaD~~ 129 (249)
|+.==|++ .||+||+-..+. +.. |.-+|+ .|.-. |+|+=
T Consensus 26 ~sSpNp~k-plHvGHlR~~iiGd~laril~~~G~-~V~r~nyigD~G 70 (354)
T PF00750_consen 26 FSSPNPTK-PLHVGHLRNTIIGDSLARILEAAGY-DVTRENYIGDWG 70 (354)
T ss_dssp E---BTTS-S-BHHHHHHHHHHHHHHHHHHHTTE-EEEEEEEEBTTS
T ss_pred ecCCCCCC-CCcCCcchhhhhhHHHHHHHHHcCC-eeeeEEEECCCC
Confidence 77778898 999999886653 334 555664 44333 88875
No 107
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=53.19 E-value=14 Score=37.31 Aligned_cols=41 Identities=22% Similarity=0.204 Sum_probs=28.0
Q ss_pred EeccCCCCCCccchhhHHHHh---HHH-HHHcCCCcEEE-EecChhh
Q 025688 89 YTGRGPSSEALHLGHLVPFMF---TKY-LQDAFKVPLVI-QLTDDEK 130 (249)
Q Consensus 89 YtG~dPSg~sLHlGHlv~~~~---l~~-lQ~~g~~~v~i-~IaD~~k 130 (249)
|+-==||+ .|||||+-..+. +.+ |.-.|+.++-. .|+||=+
T Consensus 123 ~sSaNptk-plHiGHlR~aiiGDsLaril~~~Gy~V~r~~yvnD~G~ 168 (577)
T COG0018 123 YSSANPTG-PLHIGHLRNAIIGDSLARILEFLGYDVTRENYVNDWGT 168 (577)
T ss_pred EeCCCCCC-CcccchhhhhHHHHHHHHHHHHcCCCeeEEeeECcHHH
Confidence 66667998 899999887653 444 66667544333 2888864
No 108
>PLN02843 isoleucyl-tRNA synthetase
Probab=52.92 E-value=41 Score=36.12 Aligned_cols=57 Identities=23% Similarity=0.282 Sum_probs=34.5
Q ss_pred HHHhhccccccCChhHHHHHHHcCCceEEEecc-CCCCCCccchhhHHHH---hHHHHHHcCCCcEEEE
Q 025688 60 VFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGR-GPSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQ 124 (249)
Q Consensus 60 ~l~~Rgi~~~~~d~~~ll~~~e~~k~~~iYtG~-dPSg~sLHlGHlv~~~---~l~~lQ~~g~~~v~i~ 124 (249)
...+.|++....+. .++++|.+..|. -++| .||+||.+... .+.++++.-+..+...
T Consensus 15 ~W~~~~~y~~~~~~-------~~~~~f~i~~~PPy~nG-~lHiGHa~~~~lkDii~Ry~rm~G~~v~~~ 75 (974)
T PLN02843 15 LWEENQVYKRVSDR-------NNGESFTLHDGPPYANG-DLHIGHALNKILKDFINRYQLLQGKKVHYV 75 (974)
T ss_pred HHHHCCCccccccc-------cCCCCEEEeCCCCCCCC-CcchhHHHHHHHHHHHHHHHHhcCCccccC
Confidence 44566777653321 236778888886 3566 99999988654 2445555433444444
No 109
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=48.21 E-value=48 Score=35.23 Aligned_cols=63 Identities=16% Similarity=0.143 Sum_probs=36.7
Q ss_pred HHHhhccccccCChhHHHHHHHcCCceEEEeccC-CCCCCccchhhHHHH---hHHHHHHcCCCcEEEEecChh
Q 025688 60 VFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRG-PSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQLTDDE 129 (249)
Q Consensus 60 ~l~~Rgi~~~~~d~~~ll~~~e~~k~~~iYtG~d-PSg~sLHlGHlv~~~---~l~~lQ~~g~~~v~i~IaD~~ 129 (249)
...+.+++....+ .-+.+++|++.+|.= ++| .||+||.+... ...++++.-+..+....|-++
T Consensus 31 ~W~~~~~~~~~~~------~~~~~~~f~i~~~pPyanG-~lHiGHa~~~~~~Dii~Ry~rm~G~~v~~~~G~D~ 97 (912)
T PRK05743 31 RWEENDLYQKIRE------ANKGKPKFILHDGPPYANG-DIHIGHALNKILKDIIVKSKTMSGFDAPYVPGWDC 97 (912)
T ss_pred HHHHCCCccccch------hcCCCCcEEEeCCCCCCCC-CccHHHHHHHHHHHHHHHHHHccCCcccCCCCcCC
Confidence 4456677654321 112345688888874 566 89999988653 344566654455555544443
No 110
>COG0196 RibF FAD synthase [Coenzyme metabolism]
Probab=47.79 E-value=36 Score=31.61 Aligned_cols=67 Identities=18% Similarity=0.223 Sum_probs=40.8
Q ss_pred ceEEEeccCCCCCCccchhhHHHHhHHHHHHcCCCcEEEEecChh-hhhccCCC----HHHHHHHHHHHHHHHHHcCCC
Q 025688 85 KFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDE-KCMWKNLS----VEESQRLARENAKDIIACGFD 158 (249)
Q Consensus 85 ~~~iYtG~dPSg~sLHlGHlv~~~~l~~lQ~~g~~~v~i~IaD~~-k~~~r~l~----~e~i~~~~~eni~~iiA~G~d 158 (249)
+..+-+|.= +.+|+||.-.+-.++..-+.-+.|++++.-+|| ....++.. +-..+ +-+..+..+|+|
T Consensus 16 ~~~l~IG~F---DGvHlGHq~ll~~a~~~a~~~~~~~~VitF~p~P~~~~~~~~~~~~Lt~~~----~k~~~l~~~gvd 87 (304)
T COG0196 16 GCVLTIGNF---DGVHLGHQKLLAQALEAAEKRGLPVVVITFEPHPRELLKPDKPPTRLTPLR----EKIRLLAGYGVD 87 (304)
T ss_pred CcEEEEEcC---CccchhHHHHHHHHHHHHHHhCCceEEEEecCCCHHHcCCCCCccccCCHH----HHHHHHHhcCCc
Confidence 345556655 589999986666555544555588999999999 33222211 11122 455556668875
No 111
>PRK00168 coaD phosphopantetheine adenylyltransferase; Provisional
Probab=46.86 E-value=63 Score=26.62 Aligned_cols=48 Identities=23% Similarity=0.367 Sum_probs=27.6
Q ss_pred eEEEeccCCCCCCccchhhHHHHhHHHHHHcCCCcEEEEec-ChhhhhccCCCHHHHH
Q 025688 86 FYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLT-DDEKCMWKNLSVEESQ 142 (249)
Q Consensus 86 ~~iYtG~dPSg~sLHlGHlv~~~~l~~lQ~~g~~~v~i~Ia-D~~k~~~r~l~~e~i~ 142 (249)
+.+|.|- =+.+|.||+.-+..++.. ++ .+++.++ +++|. ...+.++-.
T Consensus 3 igi~gGs---FdP~H~GHl~~~~~a~~~---~d-~v~v~~~~~~~k~--~~~~~~~R~ 51 (159)
T PRK00168 3 IAIYPGS---FDPITNGHLDIIERASRL---FD-EVIVAVAINPSKK--PLFSLEERV 51 (159)
T ss_pred EEEEeee---cCCCCHHHHHHHHHHHHH---CC-EEEEEECCCCCCC--CCCCHHHHH
Confidence 5566663 367999998877665443 33 3555555 55541 125555544
No 112
>PRK12451 arginyl-tRNA synthetase; Reviewed
Probab=46.41 E-value=21 Score=35.71 Aligned_cols=41 Identities=20% Similarity=0.215 Sum_probs=27.9
Q ss_pred EeccCCCCCCccchhhHHHHh---HH-HHHHcCCCcEEEE-ecChhh
Q 025688 89 YTGRGPSSEALHLGHLVPFMF---TK-YLQDAFKVPLVIQ-LTDDEK 130 (249)
Q Consensus 89 YtG~dPSg~sLHlGHlv~~~~---l~-~lQ~~g~~~v~i~-IaD~~k 130 (249)
|+.==|++ .||+||+-..+. +. -|.-.|+..+-.- |+|+=.
T Consensus 119 ~sSpNp~k-plHvGH~R~aiiGd~l~ril~~~G~~V~r~nyinD~G~ 164 (562)
T PRK12451 119 YSSPNIAK-PFSMGHLRSTMIGNALKHIAEKCGYEVVGINYIGDWGT 164 (562)
T ss_pred ecCCCCCC-CcccchhhhHHHHHHHHHHHHHCCCCeEEEeeecCchH
Confidence 67777998 899999886652 33 4666776544333 888763
No 113
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=46.17 E-value=14 Score=38.90 Aligned_cols=41 Identities=27% Similarity=0.382 Sum_probs=27.2
Q ss_pred CceEEEecc-CCCCCCccchhhHHH---HhHHHHHHcCCCcEEEEe
Q 025688 84 EKFYLYTGR-GPSSEALHLGHLVPF---MFTKYLQDAFKVPLVIQL 125 (249)
Q Consensus 84 k~~~iYtG~-dPSg~sLHlGHlv~~---~~l~~lQ~~g~~~v~i~I 125 (249)
+++++..-| -||| .||+||.... ..+.++++.-+..|..-+
T Consensus 34 ~Kfyvl~mfPYpSG-~LHvGH~r~Yti~Dv~aRykRm~GyNVL~PM 78 (814)
T COG0495 34 EKFYVLVMFPYPSG-ALHVGHVRNYTIGDVIARYKRMQGYNVLHPM 78 (814)
T ss_pred CceEEEeCCCCCCC-CcccCccccccHHHHHHHHHHhcCCeecccC
Confidence 478887777 5888 7999996543 345566666555554443
No 114
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=45.94 E-value=21 Score=38.52 Aligned_cols=63 Identities=17% Similarity=0.209 Sum_probs=39.1
Q ss_pred hHHHhhccccccCChhHHHHHHHcCCceEEEeccC-CCCCCccchhhHHHH---hHHHHHHcCCCcEEEEecChh
Q 025688 59 HVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRG-PSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQLTDDE 129 (249)
Q Consensus 59 ~~l~~Rgi~~~~~d~~~ll~~~e~~k~~~iYtG~d-PSg~sLHlGHlv~~~---~l~~lQ~~g~~~v~i~IaD~~ 129 (249)
....+.|++..... + +.+++|+++.|.= +|| .||+||.+... .+.++++.-+..|...-|-+|
T Consensus 30 ~~W~~~~~f~~~~~-----~--~~~~~f~i~~pPP~~nG-~lHiGH~~~~~~~Di~~Ry~rm~G~~vl~~~G~D~ 96 (1052)
T PRK14900 30 PFWQERGYFHGDEH-----D--RTRPPFSIVLPPPNVTG-SLHLGHALTATLQDVLIRWKRMSGFNTLWLPGTDH 96 (1052)
T ss_pred HHHHHCCCccCCcc-----c--CCCCCEEEecCCCCCCC-cchHHHHHhhHHHHHHHHHHHhcCCcccCCCCCCc
Confidence 45567788764211 0 2356799999984 566 89999988553 344556554455555555544
No 115
>PLN02381 valyl-tRNA synthetase
Probab=45.73 E-value=25 Score=38.13 Aligned_cols=62 Identities=16% Similarity=0.105 Sum_probs=38.8
Q ss_pred hHHHhhccccccCChhHHHHHHHcCCceEEEeccC-CCCCCccchhhHHHH---hHHHHHHcCCCcEEEEecChh
Q 025688 59 HVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRG-PSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQLTDDE 129 (249)
Q Consensus 59 ~~l~~Rgi~~~~~d~~~ll~~~e~~k~~~iYtG~d-PSg~sLHlGHlv~~~---~l~~lQ~~g~~~v~i~IaD~~ 129 (249)
....+.|++....+ ..+++|++.+|.= +|| .||+||.+... .+.++++.-+..+....|=+|
T Consensus 111 ~~W~~~~~f~~~~~--------~~~~~f~i~~ppPy~nG-~lHiGHa~~~ti~Dii~Ry~rm~G~~vl~~~G~D~ 176 (1066)
T PLN02381 111 AWWEKSGYFGADAK--------SSKPPFVIVLPPPNVTG-ALHIGHALTAAIEDTIIRWKRMSGYNALWVPGVDH 176 (1066)
T ss_pred HHHHHCCCccCCcc--------CCCCcEEEEeCCCCCCC-CccHHHHHHHHHHHHHHHHHHhCCCcccccCCCCC
Confidence 45667788765321 2356799999974 565 89999988653 344555554455655545444
No 116
>PLN02660 pantoate--beta-alanine ligase
Probab=44.58 E-value=22 Score=32.80 Aligned_cols=24 Identities=25% Similarity=0.205 Sum_probs=18.3
Q ss_pred eccCCCCCCccchhhHHHHhHHHH
Q 025688 90 TGRGPSSEALHLGHLVPFMFTKYL 113 (249)
Q Consensus 90 tG~dPSg~sLHlGHlv~~~~l~~l 113 (249)
+||=||-+.+|.||.--+..++..
T Consensus 23 igfVpTmG~LH~GH~~LI~~a~~~ 46 (284)
T PLN02660 23 IALVPTMGYLHEGHLSLVRAARAR 46 (284)
T ss_pred EEEEEcCchhhHHHHHHHHHHHHh
Confidence 677788889999997766655543
No 117
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=41.96 E-value=30 Score=37.12 Aligned_cols=66 Identities=17% Similarity=0.176 Sum_probs=40.1
Q ss_pred hHHHhhccccccCChhHHHHHHHcCCceEEEecc-CCCCCCccchhhHHHH---hHHHHHHcCCCcEEEEecChh
Q 025688 59 HVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGR-GPSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQLTDDE 129 (249)
Q Consensus 59 ~~l~~Rgi~~~~~d~~~ll~~~e~~k~~~iYtG~-dPSg~sLHlGHlv~~~---~l~~lQ~~g~~~v~i~IaD~~ 129 (249)
....+.|++....+.. .-..+++|++.+|. -||| .||+||.+... .+.++++.-+..|....|=+|
T Consensus 39 ~~W~~~~~f~~~~~~~----~~~~~~~f~i~~ppP~~~G-~lHiGHa~~~~~~D~~~Ry~rm~G~~v~~~~G~D~ 108 (995)
T PTZ00419 39 EWWEKSGFFKPAEDAK----SLNSGKKFVIVLPPPNVTG-YLHIGHALTGAIQDSLIRYHRMKGDETLWVPGTDH 108 (995)
T ss_pred HHHHHCCCcccCcccc----ccCCCCeEEEEeCCCCCCC-CCcHHHHHHHHHHHHHHHHHHhcCCcccCCCCCCC
Confidence 3566778876532100 01235668888887 4676 89999988653 345666654456666655555
No 118
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=41.96 E-value=13 Score=33.70 Aligned_cols=91 Identities=16% Similarity=0.338 Sum_probs=60.2
Q ss_pred cccccCCccC-C-----CcccHHHHHHHhCCCCCCHHHHHHHHHhcCCChhHHHhhccccccCChhHHHHHHHcCCceEE
Q 025688 15 QVVSPWEVSS-S-----GKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKGEKFYL 88 (249)
Q Consensus 15 ~~v~pw~v~~-~-----~~~dy~kl~~~fg~~~i~~~~~~r~~~~~~~~~~~l~~Rgi~~~~~d~~~ll~~~e~~k~~~i 88 (249)
-.+|||+-.- + ---|--.+++.|+-+.+|-.+ ++|.+|-.-|=.++-.-..++...+..|...+-
T Consensus 173 a~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIi---------HDPPRfS~AgeLYseefY~El~RiLkrgGrlFH 243 (287)
T COG2521 173 AKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAII---------HDPPRFSLAGELYSEEFYRELYRILKRGGRLFH 243 (287)
T ss_pred eccCCCCccccccccEEecccHHHHHhcCCccccceEe---------eCCCccchhhhHhHHHHHHHHHHHcCcCCcEEE
Confidence 4589997533 1 113667889999966666643 567788888877777667788888888999999
Q ss_pred EeccCCCCCCccchhhHHHHhHHHHHHcC
Q 025688 89 YTGRGPSSEALHLGHLVPFMFTKYLQDAF 117 (249)
Q Consensus 89 YtG~dPSg~sLHlGHlv~~~~l~~lQ~~g 117 (249)
|+|= |.. .-| |-=++--...+|.++|
T Consensus 244 YvG~-Pg~-ryr-G~d~~~gVa~RLr~vG 269 (287)
T COG2521 244 YVGN-PGK-RYR-GLDLPKGVAERLRRVG 269 (287)
T ss_pred EeCC-CCc-ccc-cCChhHHHHHHHHhcC
Confidence 9983 442 222 2223333345677766
No 119
>TIGR00124 cit_ly_ligase [citrate (pro-3S)-lyase] ligase. ATP is cleaved to AMP and pyrophosphate during the reaction. The carboxyl end is homologous to a number of cytidyltransferases that also release pyrophosphate.
Probab=41.71 E-value=22 Score=33.37 Aligned_cols=65 Identities=17% Similarity=0.249 Sum_probs=37.4
Q ss_pred cHHHHHHHhCCCCCCHHHHHHHHHhcCCChhHHHhhccccccCChhHHHHHHH----cCCceEEEeccCCCCCCccchhh
Q 025688 29 DYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYE----KGEKFYLYTGRGPSSEALHLGHL 104 (249)
Q Consensus 29 dy~kl~~~fg~~~i~~~~~~r~~~~~~~~~~~l~~Rgi~~~~~d~~~ll~~~e----~~k~~~iYtG~dPSg~sLHlGHl 104 (249)
.|.++.+++|=..+... ...+.+++.|. .++...++.+. .++++.+|.| |.+.+|+||+
T Consensus 94 ~~~~fy~klGF~~i~~~----------~~~~v~mE~~~----~~~~~y~~~l~~~~~~~~~i~~~~g---~fdP~t~GH~ 156 (332)
T TIGR00124 94 EYAALFEYCGFKTLAEA----------KDQGVLLENSA----TRLKRYCSTLPKPRTPGNKIGSIVM---NANPFTNGHR 156 (332)
T ss_pred hHHHHHHHcCCEEeeee----------cceEEEEeccC----cCHHHHHHHHHHhccCCCcEEEEEe---CcCCCchHHH
Confidence 45566666665444441 11234555554 23444444432 2457888888 6688999997
Q ss_pred HHHHhH
Q 025688 105 VPFMFT 110 (249)
Q Consensus 105 v~~~~l 110 (249)
--+...
T Consensus 157 ~li~~A 162 (332)
T TIGR00124 157 YLIEQA 162 (332)
T ss_pred HHHHHH
Confidence 766543
No 120
>PRK01153 nicotinamide-nucleotide adenylyltransferase; Provisional
Probab=41.05 E-value=1.6e+02 Score=24.72 Aligned_cols=69 Identities=19% Similarity=0.341 Sum_probs=36.8
Q ss_pred EEEeccCCCCCCccchhhHHHHhHHHHHHcCCCcEEEEec--ChhhhhccCCCHHHHHHHHHHHHHHHHH-cCCCCCceE
Q 025688 87 YLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLT--DDEKCMWKNLSVEESQRLARENAKDIIA-CGFDVTKTF 163 (249)
Q Consensus 87 ~iYtG~dPSg~sLHlGHlv~~~~l~~lQ~~g~~~v~i~Ia--D~~k~~~r~l~~e~i~~~~~eni~~iiA-~G~dp~kt~ 163 (249)
.+|.|.- +.+|.||+-.+..+.. .. ..++|+|+ +.+....++.+.++-. +.++..++ .+++.++..
T Consensus 3 gl~~G~F---~P~H~GHl~~i~~a~~---~~-d~v~v~i~s~~~~~~~~~p~~~~~R~----~mi~~a~~~~~~~~~~~~ 71 (174)
T PRK01153 3 ALFIGRF---QPFHKGHLEVIKWILE---EV-DELIIGIGSAQESHTLKNPFTAGERI----LMIRKALEEEGIDLSRYY 71 (174)
T ss_pred EEEeecc---CCCCHHHHHHHHHHHH---hC-CEEEEEecCCCCCCCCCCCCCHHHHH----HHHHHHHhcCCCCcceee
Confidence 4666643 4699999866655433 23 24666664 4332223346766544 34444333 455445565
Q ss_pred EEE
Q 025688 164 IFS 166 (249)
Q Consensus 164 i~~ 166 (249)
+.-
T Consensus 72 ~~p 74 (174)
T PRK01153 72 IIP 74 (174)
T ss_pred Eec
Confidence 554
No 121
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=41.04 E-value=27 Score=36.79 Aligned_cols=61 Identities=13% Similarity=0.171 Sum_probs=38.0
Q ss_pred hHHHhhccccccCChhHHHHHHHcCCceEEEecc-CCCCCCccchhhHHHH---hHHHHHHcCCCcEEEEecChh
Q 025688 59 HVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGR-GPSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQLTDDE 129 (249)
Q Consensus 59 ~~l~~Rgi~~~~~d~~~ll~~~e~~k~~~iYtG~-dPSg~sLHlGHlv~~~---~l~~lQ~~g~~~v~i~IaD~~ 129 (249)
....+.|++....+ ++++|.+.+|. -+|| .||+||.+... .+.++++.-+..+...-|=+|
T Consensus 20 ~~W~~~~~f~~~~~---------~~~~f~i~~ppP~~~G-~lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~~G~D~ 84 (874)
T PRK05729 20 QKWEEKGYFKPDDN---------SKKPFSIVIPPPNVTG-SLHMGHALNNTLQDILIRYKRMQGYNTLWLPGTDH 84 (874)
T ss_pred HHHHHCCCcccCcC---------CCCCEEEecCCCCCCC-cchHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCc
Confidence 35567788765321 35678887765 3566 99999988553 344566654455555555444
No 122
>cd02064 FAD_synthetase_N FAD synthetase, N-terminal domain of the bifunctional enzyme. FAD synthetase_N. N-terminal domain of the bifunctional riboflavin biosynthesis protein riboflavin kinase/FAD synthetase. These enzymes have both ATP:riboflavin 5'-phosphotransferase and ATP:FMN-adenylyltransferase activities. The N-terminal domain is believed to play a role in the adenylylation reaction of FAD synthetases. The C-terminal domain is thought to have kinase activity. FAD synthetase is present among all kingdoms of life. However, the bifunctional enzyme is not found in mammals, which use separate enzymes for FMN and FAD formation.
Probab=40.66 E-value=32 Score=28.89 Aligned_cols=33 Identities=21% Similarity=0.292 Sum_probs=25.1
Q ss_pred CCccchhhHHHHhHHHHHHcCCCcEEEEecChh
Q 025688 97 EALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDE 129 (249)
Q Consensus 97 ~sLHlGHlv~~~~l~~lQ~~g~~~v~i~IaD~~ 129 (249)
+.+|+||.--+..++.+.+..+...+++.-|+|
T Consensus 9 DgvH~GH~~ll~~a~~~a~~~~~~~vvv~f~~~ 41 (180)
T cd02064 9 DGVHLGHQALIKTLKKIARERGLPSAVLTFDPH 41 (180)
T ss_pred CccCHHHHHHHHHHHHHHHHcCCCeEEEEECCC
Confidence 579999999888888876654456666666776
No 123
>COG0414 PanC Panthothenate synthetase [Coenzyme metabolism]
Probab=40.39 E-value=30 Score=31.87 Aligned_cols=22 Identities=36% Similarity=0.413 Sum_probs=17.7
Q ss_pred eccCCCCCCccchhhHHHHhHH
Q 025688 90 TGRGPSSEALHLGHLVPFMFTK 111 (249)
Q Consensus 90 tG~dPSg~sLHlGHlv~~~~l~ 111 (249)
+||=||-+.||=||+--+...+
T Consensus 24 Vg~VPTMG~LH~GHlsLVr~A~ 45 (285)
T COG0414 24 VGLVPTMGNLHEGHLSLVRRAK 45 (285)
T ss_pred EEEEcCCcccchHHHHHHHHHh
Confidence 6889999999999976555443
No 124
>PLN02286 arginine-tRNA ligase
Probab=38.47 E-value=35 Score=34.34 Aligned_cols=41 Identities=17% Similarity=0.203 Sum_probs=27.5
Q ss_pred EeccCCCCCCccchhhHHHHh---H-HHHHHcCCCcEEEE-ecChhh
Q 025688 89 YTGRGPSSEALHLGHLVPFMF---T-KYLQDAFKVPLVIQ-LTDDEK 130 (249)
Q Consensus 89 YtG~dPSg~sLHlGHlv~~~~---l-~~lQ~~g~~~v~i~-IaD~~k 130 (249)
|+.==||+ .||+||+-..+. + +-|.-.|+..+-.- |+|+=.
T Consensus 123 fsSpNp~k-plHvGHlRsaiiGdsLaril~~~G~~V~r~nyinD~G~ 168 (576)
T PLN02286 123 FSSPNIAK-EMHVGHLRSTIIGDTLARMLEFSGVEVLRRNHVGDWGT 168 (576)
T ss_pred ecCCCCCC-CCccccccchhhHHHHHHHHHHcCCceEEEEeecchHH
Confidence 66777998 899999876642 3 34666676544333 888753
No 125
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=38.34 E-value=3e+02 Score=24.85 Aligned_cols=133 Identities=12% Similarity=0.061 Sum_probs=69.7
Q ss_pred ccccCCccCCCcccHHHHHHHhCCCCCCHHHHHHHHHhcCCChhHHHhhc----c-ccccCC-------hh--HHHHH-H
Q 025688 16 VVSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRG----V-FFAHRD-------LN--DILDA-Y 80 (249)
Q Consensus 16 ~v~pw~v~~~~~~dy~kl~~~fg~~~i~~~~~~r~~~~~~~~~~~l~~Rg----i-~~~~~d-------~~--~ll~~-~ 80 (249)
.+|||+..+ .||++.+.+. ++ +++..| | +.+.+. .+ ++.+. .
T Consensus 8 ~~TPf~~dg--~iD~~~~~~~----------i~-----------~~i~~G~v~gi~~~GstGE~~~Lt~eEr~~~~~~~~ 64 (290)
T TIGR00683 8 LLVSFNEDG--TINEKGLRQI----------IR-----------HNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAK 64 (290)
T ss_pred eecCCCCCC--CcCHHHHHHH----------HH-----------HHHhCCCcCEEEECCcccccccCCHHHHHHHHHHHH
Confidence 589999888 8999987663 12 233333 2 233322 12 12221 1
Q ss_pred H-cCCceEEEeccCCCCCCccchhhHHHHhHHHHHHcCCCcEEEEecChhhhhccCCCHHHHHHHHHHHHHHHHHcCCCC
Q 025688 81 E-KGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDV 159 (249)
Q Consensus 81 e-~~k~~~iYtG~dPSg~sLHlGHlv~~~~l~~lQ~~g~~~v~i~IaD~~k~~~r~l~~e~i~~~~~eni~~iiA~G~dp 159 (249)
+ .++++-++.|..-.+ -.-.....++.++.| ...++++. |. +. +.+.+++. +..+.+.+. .++
T Consensus 65 ~~~~~~~pvi~gv~~~~------t~~~i~la~~a~~~G-ad~v~v~~-P~-y~--~~~~~~i~----~yf~~v~~~-~~~ 128 (290)
T TIGR00683 65 DEAKDQIALIAQVGSVN------LKEAVELGKYATELG-YDCLSAVT-PF-YY--KFSFPEIK----HYYDTIIAE-TGG 128 (290)
T ss_pred HHhCCCCcEEEecCCCC------HHHHHHHHHHHHHhC-CCEEEEeC-Cc-CC--CCCHHHHH----HHHHHHHhh-CCC
Confidence 1 234577888876333 122334456778877 55555443 43 21 25667777 344444331 112
Q ss_pred CceEEEEcCcCCC-cccHHHHHHHhccCC
Q 025688 160 TKTFIFSDFDYVG-GAFYKNMVKVAKCVT 187 (249)
Q Consensus 160 ~kt~i~~ns~~~~-~~~~~~~l~l~k~~t 187 (249)
-.+.+||+-.+.+ ....+.+.+++++-+
T Consensus 129 lpv~lYn~P~~tg~~l~~~~i~~L~~~pn 157 (290)
T TIGR00683 129 LNMIVYSIPFLTGVNMGIEQFGELYKNPK 157 (290)
T ss_pred CCEEEEeCccccccCcCHHHHHHHhcCCC
Confidence 2578888876644 244455556765443
No 126
>TIGR00392 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.
Probab=37.30 E-value=35 Score=35.82 Aligned_cols=60 Identities=12% Similarity=0.193 Sum_probs=36.3
Q ss_pred HHHhhccccccCChhHHHHHHHcCCceEEEeccC-CCCCCccchhhHHHH---hHHHHHHcCCCcEEEEec
Q 025688 60 VFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRG-PSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQLT 126 (249)
Q Consensus 60 ~l~~Rgi~~~~~d~~~ll~~~e~~k~~~iYtG~d-PSg~sLHlGHlv~~~---~l~~lQ~~g~~~v~i~Ia 126 (249)
...+++++.... +.-+.+++++++.|.= ||| .||+||.+... ...++++.-+..|....|
T Consensus 18 ~W~~~~~f~~~~------~~~~~~~~f~i~~~pPy~nG-~lH~GH~~~~~~~D~~~Ry~rm~G~~v~~~~G 81 (861)
T TIGR00392 18 FWQENDIFEKVK------KLNKGKPEFIFHDGPPYANG-SIHLGHALNKILKDIILRYKTMQGFNVTRKPG 81 (861)
T ss_pred HHHHCCchhhhh------hccCCCCCeEEecCCCCCCC-CccHHHHHHHHHHHHHHHHHHcCCCccCCCCC
Confidence 456677765422 1112356799999983 346 89999988553 345666654455555444
No 127
>KOG2804 consensus Phosphorylcholine transferase/cholinephosphate cytidylyltransferase [Lipid transport and metabolism]
Probab=36.64 E-value=35 Score=31.93 Aligned_cols=40 Identities=20% Similarity=0.261 Sum_probs=29.0
Q ss_pred CCceEEEe-ccCCCCCCccchhhHHHHhHHHHHHcCCCcEEEEecChh
Q 025688 83 GEKFYLYT-GRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDE 129 (249)
Q Consensus 83 ~k~~~iYt-G~dPSg~sLHlGHlv~~~~l~~lQ~~g~~~v~i~IaD~~ 129 (249)
++|++||+ |+- +-.|.||.-.++++|.+ + ..+++++|=..
T Consensus 61 ~RPVRVYADGIy---DLFH~GHarqL~QaK~~---F-PNvyLiVGvc~ 101 (348)
T KOG2804|consen 61 DRPVRVYADGIY---DLFHYGHARQLEQAKKL---F-PNVYLIVGVCS 101 (348)
T ss_pred CCceEEEccchH---HHhhhhHHHHHHHHHHh---C-CCeEEEEeecC
Confidence 68999997 554 68999999888877643 4 33677765444
No 128
>PRK15458 tagatose 6-phosphate aldolase subunit KbaZ; Provisional
Probab=35.82 E-value=59 Score=31.66 Aligned_cols=64 Identities=30% Similarity=0.481 Sum_probs=44.2
Q ss_pred eEEEeccCCCCCCccchhhHHHHhHHHHHHcCCCcE-EEEecChh-h-hhccCCCHHHHHHHHHHHHHHHHHcCCC
Q 025688 86 FYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPL-VIQLTDDE-K-CMWKNLSVEESQRLARENAKDIIACGFD 158 (249)
Q Consensus 86 ~~iYtG~dPSg~sLHlGHlv~~~~l~~lQ~~g~~~v-~i~IaD~~-k-~~~r~l~~e~i~~~~~eni~~iiA~G~d 158 (249)
+.-|||+.|.- ..- ++..+-+.-+.|. -|++|-+| . ..++.++.++.-+.+.+.++.+++.||+
T Consensus 56 ~GGYTGmtP~d-------F~~--~V~~iA~~~gf~~~~iiLGGDHLGPn~Wq~lpa~eAM~~A~~li~ayV~AGF~ 122 (426)
T PRK15458 56 FGGYTGMTPAD-------FRG--FVCQLADSLNFPQEALILGGDHLGPNRWQNLPAAQAMANADDLIKSYVAAGFK 122 (426)
T ss_pred cCCcCCCCHHH-------HHH--HHHHHHHHcCCChhhEEeecCCCCCccccCCCHHHHHHHHHHHHHHHHHcCCc
Confidence 35678888774 211 2233333333665 67778888 3 4566799999999999999999999984
No 129
>COG1056 NadR Nicotinamide mononucleotide adenylyltransferase [Coenzyme metabolism]
Probab=35.69 E-value=1.6e+02 Score=25.11 Aligned_cols=76 Identities=24% Similarity=0.333 Sum_probs=42.2
Q ss_pred CCceEEEeccCCCCCCccchhhHHHHhHHHHHHcCCCcEEEEecChh-hhh-ccCCCHHHHHHHHHHHHHH-HHHcCCCC
Q 025688 83 GEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDE-KCM-WKNLSVEESQRLARENAKD-IIACGFDV 159 (249)
Q Consensus 83 ~k~~~iYtG~dPSg~sLHlGHlv~~~~l~~lQ~~g~~~v~i~IaD~~-k~~-~r~l~~e~i~~~~~eni~~-iiA~G~dp 159 (249)
++...+|.|+- ..+|.||+-.+... |.+.. .++|+||=.. +.+ .++-|.-+-. ..+.+ +...|.++
T Consensus 2 ~~~rgv~~GRF---qP~H~GHl~vi~~a--l~~vD--eliI~iGSa~~~~t~~nPfTagER~----~mi~~~L~~~~~~~ 70 (172)
T COG1056 2 RMKRGVYFGRF---QPLHTGHLYVIKRA--LSKVD--ELIIVIGSAQESHTLKNPFTAGERI----PMIRDRLREAGLDL 70 (172)
T ss_pred CceEEEEEecc---CCccHhHHHHHHHH--HHhCC--EEEEEEccCcccccccCCCCccchh----HHHHHHHHhcCCCc
Confidence 45678899976 57999997665532 33432 3556655444 433 3333332222 24443 33478887
Q ss_pred CceEEEEcCcC
Q 025688 160 TKTFIFSDFDY 170 (249)
Q Consensus 160 ~kt~i~~ns~~ 170 (249)
+..+.-=-++
T Consensus 71 -r~~~~~v~d~ 80 (172)
T COG1056 71 -RVYLRPVFDI 80 (172)
T ss_pred -eEEEEecCcc
Confidence 6666544443
No 130
>cd02173 ECT CTP:phosphoethanolamine cytidylyltransferase (ECT). CTP:phosphoethanolamine cytidylyltransferase (ECT) catalyzes the conversion of phosphoethanolamine to CDP-ethanolamine as part of the CDP-ethanolamine biosynthesis pathway. ECT expression in hepatocytes is localized predominantly to areas of the cytoplasm that are rich in rough endoplasmic reticulum. Several ECTs, including yeast and human ECT, have large repetitive sequences located within their N- and C-termini.
Probab=35.63 E-value=1.2e+02 Score=24.98 Aligned_cols=39 Identities=23% Similarity=0.394 Sum_probs=24.1
Q ss_pred CceEEEeccCCCCCCccchhhHHHHhHHHHHHcCCCcEEEEecChh
Q 025688 84 EKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDE 129 (249)
Q Consensus 84 k~~~iYtG~dPSg~sLHlGHlv~~~~l~~lQ~~g~~~v~i~IaD~~ 129 (249)
+++..+.| |-+.+|.||+--+..++.+ |+ .+++-|+.++
T Consensus 2 ~~iv~~~G---~FD~~H~GHi~~L~~A~~l---gd-~liVgV~~D~ 40 (152)
T cd02173 2 DKVVYVDG---AFDLFHIGHIEFLEKAREL---GD-YLIVGVHDDQ 40 (152)
T ss_pred CeEEEEcC---cccCCCHHHHHHHHHHHHc---CC-EEEEEEeCcH
Confidence 34445555 3368999998765555444 64 4667677655
No 131
>KOG0432 consensus Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=35.30 E-value=31 Score=36.55 Aligned_cols=34 Identities=18% Similarity=0.309 Sum_probs=22.0
Q ss_pred CCCCccchhhHHHH----hHHHHHHcCCCcEEEEecChhh
Q 025688 95 SSEALHLGHLVPFM----FTKYLQDAFKVPLVIQLTDDEK 130 (249)
Q Consensus 95 Sg~sLHlGHlv~~~----~l~~lQ~~g~~~v~i~IaD~~k 130 (249)
|| +|||||.+.+- .+||-+..| ..+...-|-+|+
T Consensus 87 TG-~LHiGHALt~aiqD~i~R~~rm~G-~~vlw~PG~DHA 124 (995)
T KOG0432|consen 87 TG-SLHIGHALTVAIQDALARYNRMHG-YQVLWVPGTDHA 124 (995)
T ss_pred cc-ccchhHHHHHHHHHHHHHHHHhcC-CeeeecCCcccc
Confidence 66 99999988653 244444455 566666666663
No 132
>PRK05627 bifunctional riboflavin kinase/FMN adenylyltransferase; Reviewed
Probab=35.09 E-value=44 Score=30.86 Aligned_cols=41 Identities=17% Similarity=0.224 Sum_probs=29.0
Q ss_pred eEEEeccCCCCCCccchhhHHHHhHHHHHHcCCCcEEEEecChh
Q 025688 86 FYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDE 129 (249)
Q Consensus 86 ~~iYtG~dPSg~sLHlGHlv~~~~l~~lQ~~g~~~v~i~IaD~~ 129 (249)
..+-.|.= +.+|+||.--+-.++.+.+.-+.+.+++--|+|
T Consensus 15 ~vv~iG~F---DGvH~GHq~Ll~~a~~~a~~~~~~~~vitFd~~ 55 (305)
T PRK05627 15 CVLTIGNF---DGVHRGHQALLARAREIARERGLPSVVMTFEPH 55 (305)
T ss_pred EEEEEeeC---CcCCHHHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 34455544 589999988888777776655566667767888
No 133
>TIGR02810 agaZ_gatZ D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit. Aldolases specific for D-tagatose-bisphosphate occur in distinct pathways in Escherichia coli and other bacteria, one for the degradation of galactitol (formerly dulcitol) and one for degradation of N-acetyl-galactosamine and D-galactosamine. This family represents a protein of both systems that behaves as a non-catalytic subunit of D-tagatose-bisphosphate aldolase, required both for full activity and for good stability of the aldolase. Note that members of this protein family appear in public databases annotated as putative tagatose 6-phosphate kinases, possibly in error.
Probab=35.06 E-value=66 Score=31.29 Aligned_cols=64 Identities=25% Similarity=0.428 Sum_probs=44.3
Q ss_pred eEEEeccCCCCCCccchhhHHHHhHHHHHHcCCCcE-EEEecChh-h-hhccCCCHHHHHHHHHHHHHHHHHcCCC
Q 025688 86 FYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPL-VIQLTDDE-K-CMWKNLSVEESQRLARENAKDIIACGFD 158 (249)
Q Consensus 86 ~~iYtG~dPSg~sLHlGHlv~~~~l~~lQ~~g~~~v-~i~IaD~~-k-~~~r~l~~e~i~~~~~eni~~iiA~G~d 158 (249)
+.-|||+.|.- ..- ++..+-+.-+.|. -|++|-+| . ..++.++.++.-+.+.+.++.+++.||+
T Consensus 52 ~GGYTGmtP~d-------F~~--~V~~iA~~~gf~~~~iiLggDHlGPn~Wq~lpa~eAM~~A~~li~ayV~AGF~ 118 (420)
T TIGR02810 52 FGGYTGMTPAD-------FRD--FVETIADRIGFPRDRLILGGDHLGPNPWQHLPADEAMAKAAALVDAYVEAGFT 118 (420)
T ss_pred cCCcCCCCHHH-------HHH--HHHHHHHHcCCChhcEEeecCCCCCccccCCCHHHHHHHHHHHHHHHHHcCCc
Confidence 35678888775 221 2233333333665 67778888 3 4466799999999999999999999984
No 134
>TIGR00125 cyt_tran_rel cytidyltransferase-related domain. Protein families that contain at least one copy of this domain include citrate lyase ligase, pantoate-beta-alanine ligase, glycerol-3-phosphate cytidyltransferase, ADP-heptose synthase, phosphocholine cytidylyltransferase, lipopolysaccharide core biosynthesis protein KdtB, the bifunctional protein NadR, and a number whose function is unknown. Many of these proteins are known to use CTP or ATP and release pyrophosphate.
Probab=34.61 E-value=54 Score=22.13 Aligned_cols=27 Identities=30% Similarity=0.501 Sum_probs=17.1
Q ss_pred CCccchhhHHHHhHHHHHHcCCCcEEEEecC
Q 025688 97 EALHLGHLVPFMFTKYLQDAFKVPLVIQLTD 127 (249)
Q Consensus 97 ~sLHlGHlv~~~~l~~lQ~~g~~~v~i~IaD 127 (249)
+.+|.||.--+..++. .++ .+++.|+-
T Consensus 9 dp~H~GH~~~l~~a~~---~~~-~~vv~i~~ 35 (66)
T TIGR00125 9 DPFHLGHLDLLERAKE---LFD-ELIVGVGS 35 (66)
T ss_pred CCCCHHHHHHHHHHHH---hCC-EEEEEECc
Confidence 5799999776665543 344 45555654
No 135
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=33.29 E-value=39 Score=34.91 Aligned_cols=42 Identities=26% Similarity=0.414 Sum_probs=36.5
Q ss_pred CcccHHHHHHHhCCCCCCHHHHHHHHHhcCCChhHHHhhccccccCC
Q 025688 26 GKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRD 72 (249)
Q Consensus 26 ~~~dy~kl~~~fg~~~i~~~~~~r~~~~~~~~~~~l~~Rgi~~~~~d 72 (249)
...+||++|+. |+.+++|++...+-.| ...++|+|.+..+||
T Consensus 228 ~slnvdaiiR~-gi~rftDq~g~Lw~SL----AdYYIr~g~~ekarD 269 (835)
T KOG2047|consen 228 QSLNVDAIIRG-GIRRFTDQLGFLWCSL----ADYYIRSGLFEKARD 269 (835)
T ss_pred cccCHHHHHHh-hcccCcHHHHHHHHHH----HHHHHHhhhhHHHHH
Confidence 35899999997 9999999988888877 688999999987765
No 136
>KOG1149 consensus Glutamyl-tRNA synthetase (mitochondrial) [Translation, ribosomal structure and biogenesis]
Probab=32.52 E-value=1e+02 Score=30.36 Aligned_cols=43 Identities=19% Similarity=0.333 Sum_probs=28.2
Q ss_pred eEEEeccCCCCCCccchhhHHHHhHHHHHHcCCCcEEEEecChh
Q 025688 86 FYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDE 129 (249)
Q Consensus 86 ~~iYtG~dPSg~sLHlGHlv~~~~l~~lQ~~g~~~v~i~IaD~~ 129 (249)
+++---=-||| -||||-+-..++.--+.+..+...++-|-|.-
T Consensus 34 VRvRFAPSPTG-fLHlGgLRTALfNYLfArk~gGkFiLRiEDTD 76 (524)
T KOG1149|consen 34 VRVRFAPSPTG-FLHLGGLRTALFNYLFARKKGGKFILRIEDTD 76 (524)
T ss_pred eEEeecCCCCc-ceehhhHHHHHHHHHHHHhcCCeEEEEecccc
Confidence 44444445788 99999999888743344444456777777654
No 137
>TIGR01527 arch_NMN_Atrans nicotinamide-nucleotide adenylyltransferase. In some archaeal species, a lower-scoring paralog, uncharacterized with respect to activity, is also present. These score between trusted and noise cutoffs.
Probab=32.10 E-value=1.3e+02 Score=25.28 Aligned_cols=48 Identities=23% Similarity=0.306 Sum_probs=25.7
Q ss_pred EEeccCCCCCCccchhhHHHHhHHHHHHcCCCcEEEEecChh-hhh-ccCCCHHHHH
Q 025688 88 LYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDE-KCM-WKNLSVEESQ 142 (249)
Q Consensus 88 iYtG~dPSg~sLHlGHlv~~~~l~~lQ~~g~~~v~i~IaD~~-k~~-~r~l~~e~i~ 142 (249)
+|.|.- +.+|+||+--+..+... .+ .++|.|+... .+. .++.+.++-.
T Consensus 3 l~~G~F---dP~H~GHl~ii~~a~~~---~D-~lii~i~s~~~~~k~~~p~~~~eR~ 52 (165)
T TIGR01527 3 FYIGRF---QPFHLGHLEVIKKIAEE---VD-ELIIGIGSAQESHTLENPFTAGERI 52 (165)
T ss_pred EEEecc---CCCCHHHHHHHHHHHHH---CC-EEEEEEcCCCCCCCCCCCCCHHHHH
Confidence 455533 56999998665543333 32 4556554433 332 2346665444
No 138
>PRK15052 D-tagatose-1,6-bisphosphate aldolase subunit GatZ; Provisional
Probab=32.09 E-value=80 Score=30.74 Aligned_cols=64 Identities=25% Similarity=0.378 Sum_probs=43.7
Q ss_pred eEEEeccCCCCCCccchhhHHHHhHHHHHHcCCCcE-EEEecChh-h-hhccCCCHHHHHHHHHHHHHHHHHcCCC
Q 025688 86 FYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPL-VIQLTDDE-K-CMWKNLSVEESQRLARENAKDIIACGFD 158 (249)
Q Consensus 86 ~~iYtG~dPSg~sLHlGHlv~~~~l~~lQ~~g~~~v-~i~IaD~~-k-~~~r~l~~e~i~~~~~eni~~iiA~G~d 158 (249)
+.-|||+.|.- ..- ++..+-+.-+.|. -|++|-+| . ..++.++.++.-+.+.+.++.+++.||+
T Consensus 53 ~GGYTGmtP~d-------F~~--~V~~iA~~~gf~~~~iiLggDHlGPn~Wq~~pa~eAM~~A~~li~ayV~AGF~ 119 (421)
T PRK15052 53 FGGYTGMTPAD-------FRE--FVYGIADKVGFPRERIILGGDHLGPNCWQQEPADAAMEKSVELVKAYVRAGFS 119 (421)
T ss_pred cCCcCCCCHHH-------HHH--HHHHHHHHcCCChhcEEeecCCCCCccccCCCHHHHHHHHHHHHHHHHHcCCc
Confidence 34678887774 111 2233333333665 67778888 3 4556688999999999999999999984
No 139
>cd00560 PanC Pantoate-beta-alanine ligase. PanC Pantoate-beta-alanine ligase, also known as pantothenate synthase, catalyzes the formation of pantothenate from pantoate and alanine. PanC belongs to a large superfamily of nucleotidyltransferases that includes , ATP sulfurylase (ATPS), phosphopantetheine adenylyltransferase (PPAT), and the amino-acyl tRNA synthetases. The enzymes of this family are structurally similar and share a dinucleotide-binding domain.
Probab=31.66 E-value=50 Score=30.21 Aligned_cols=23 Identities=35% Similarity=0.372 Sum_probs=16.7
Q ss_pred eccCCCCCCccchhhHHHHhHHH
Q 025688 90 TGRGPSSEALHLGHLVPFMFTKY 112 (249)
Q Consensus 90 tG~dPSg~sLHlGHlv~~~~l~~ 112 (249)
+|+=||-+.+|.||.--+-.++.
T Consensus 24 ig~V~TmG~LH~GH~~LI~~a~~ 46 (277)
T cd00560 24 IGFVPTMGALHEGHLSLVRRARA 46 (277)
T ss_pred EEEEECCCcccHHHHHHHHHHHH
Confidence 46668878899999766655543
No 140
>cd02167 NMNAT_NadR Nicotinamide/nicotinate mononucleotide adenylyltransferase of bifunctional NadR-like proteins. NMNAT domain of NadR protein. The NadR protein (NadR) is a bifunctional enzyme possessing both NMN adenylytransferase (NMNAT) and ribosylnicotinamide kinase (RNK) activities. Its function is essential for the growth and survival of H. influenzae and thus may present a new highly specific anti-infectious drug target. The N-terminal domain that hosts the NMNAT activity is closely related to archaeal NMNAT. The bound NAD at the active site of the NMNAT domain reveals several critical interactions between NAD and the protein.The NMNAT domain of hiNadR defines yet another member of the pyridine nucleotide adenylyltransferase
Probab=31.18 E-value=97 Score=25.60 Aligned_cols=52 Identities=21% Similarity=0.212 Sum_probs=29.0
Q ss_pred EEEeccCCCCCCccchhhHHHHhHHHHHHcCCCcEEEEecChh--hhhccCCCHHHHHHHH
Q 025688 87 YLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDE--KCMWKNLSVEESQRLA 145 (249)
Q Consensus 87 ~iYtG~dPSg~sLHlGHlv~~~~l~~lQ~~g~~~v~i~IaD~~--k~~~r~l~~e~i~~~~ 145 (249)
.+|.|.- +.+|.||+..+..+... . ..++|+++-.. +......+.++-.++.
T Consensus 2 gl~~G~F---~P~H~GHl~li~~a~~~---~-d~v~vi~~~~~~~~~~~~~~~~~~R~~mi 55 (158)
T cd02167 2 GIVFGKF---APLHTGHVYLIYKALSQ---V-DELLIIVGSDDTRDDARTGLPLEKRLRWL 55 (158)
T ss_pred EEEeecc---CCCCHHHHHHHHHHHHH---C-CEEEEEECCCCcccccCCCCCHHHHHHHH
Confidence 3566643 57999998766654333 3 24666665444 2222336776666433
No 141
>PF13480 Acetyltransf_6: Acetyltransferase (GNAT) domain
Probab=31.04 E-value=61 Score=24.59 Aligned_cols=33 Identities=18% Similarity=0.356 Sum_probs=27.3
Q ss_pred ceEEEeccCCCCCCccchhhHHHHhHHHHHHcC
Q 025688 85 KFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAF 117 (249)
Q Consensus 85 ~~~iYtG~dPSg~sLHlGHlv~~~~l~~lQ~~g 117 (249)
-...++|++|.....++|+++-...++|..+.|
T Consensus 95 ~~~~~~g~~~~~~~~~~~~~l~~~~i~~a~~~g 127 (142)
T PF13480_consen 95 LYYWYGGYDPEYRKYSPGRLLLWEAIRWAIERG 127 (142)
T ss_pred EEEEEEEECHhhHhCCHHHHHHHHHHHHHHHCC
Confidence 345678999998888899988888888888887
No 142
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.
Probab=30.45 E-value=46 Score=35.52 Aligned_cols=55 Identities=20% Similarity=0.297 Sum_probs=34.6
Q ss_pred HHHhhccccccCChhHHHHHHHcCCceEEEeccC-CCCCCccchhhHHHH---hHHHHHHcCCCcEEEE
Q 025688 60 VFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRG-PSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQ 124 (249)
Q Consensus 60 ~l~~Rgi~~~~~d~~~ll~~~e~~k~~~iYtG~d-PSg~sLHlGHlv~~~---~l~~lQ~~g~~~v~i~ 124 (249)
...+.|++....+ ++++|++.+|.= +|| .||+||..... ...++|+.-+..|...
T Consensus 10 ~W~~~~~fe~~~~---------~~~kf~i~~ppPy~nG-~lH~GH~~~~~~~D~~aRy~Rm~G~~vl~p 68 (938)
T TIGR00395 10 RWEEAHIFEADPD---------DREKFFLTMAYPYLNG-VMHAGHCRTFTIPEVSARFERMKGKNVLFP 68 (938)
T ss_pred HHHhCCCcccCCC---------CCCceEEecCCCCCCC-CcccchhhhhhHHHHHHHHHHhcCCccCCC
Confidence 4456677654321 256788888874 456 99999988653 3556777544555443
No 143
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=30.32 E-value=4.5e+02 Score=24.42 Aligned_cols=115 Identities=16% Similarity=0.191 Sum_probs=72.0
Q ss_pred CCCCCCHHHHHHHHHhcCCChhHHHhhccccccCChhHHHHHHHcCCceEEEeccCCCCCCccchhhHHHHhHHHHHHcC
Q 025688 38 GCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAF 117 (249)
Q Consensus 38 g~~~i~~~~~~r~~~~~~~~~~~l~~Rgi~~~~~d~~~ll~~~e~~k~~~iYtG~dPSg~sLHlGHlv~~~~l~~lQ~~g 117 (249)
|.-+=+++....||.|++. .| .=|-.--.|..++.++.+.++ .+|++..|+=||- .+|=+---. +...+++..+
T Consensus 57 GtCKSa~~~~sDLe~l~~~-t~--~IR~Y~sDCn~le~v~pAa~~-~g~kv~lGiw~td-d~~~~~~~t-il~ay~~~~~ 130 (305)
T COG5309 57 GTCKSADQVASDLELLASY-TH--SIRTYGSDCNTLENVLPAAEA-SGFKVFLGIWPTD-DIHDAVEKT-ILSAYLPYNG 130 (305)
T ss_pred CCCcCHHHHHhHHHHhccC-Cc--eEEEeeccchhhhhhHHHHHh-cCceEEEEEeecc-chhhhHHHH-HHHHHhccCC
Confidence 3333445566777777665 23 333333567778888888874 5699999999996 787664322 2223566655
Q ss_pred CCcEEEEecChhhhhccCCCHHHHHHHHHHHHHHHHHcCCC
Q 025688 118 KVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFD 158 (249)
Q Consensus 118 ~~~v~i~IaD~~k~~~r~l~~e~i~~~~~eni~~iiA~G~d 158 (249)
--.+.-++.--|+..++.++.+++-++...--....+.|+|
T Consensus 131 ~d~v~~v~VGnEal~r~~~tasql~~~I~~vrsav~~agy~ 171 (305)
T COG5309 131 WDDVTTVTVGNEALNRNDLTASQLIEYIDDVRSAVKEAGYD 171 (305)
T ss_pred CCceEEEEechhhhhcCCCCHHHHHHHHHHHHHHHHhcCCC
Confidence 33444455556777666699999997664333334457876
No 144
>TIGR00018 panC pantoate--beta-alanine ligase. This family is pantoate--beta-alanine ligase, the last enzyme of pantothenate biosynthesis.
Probab=29.70 E-value=63 Score=29.72 Aligned_cols=24 Identities=25% Similarity=0.189 Sum_probs=17.8
Q ss_pred eccCCCCCCccchhhHHHHhHHHH
Q 025688 90 TGRGPSSEALHLGHLVPFMFTKYL 113 (249)
Q Consensus 90 tG~dPSg~sLHlGHlv~~~~l~~l 113 (249)
+||=||-+.+|.||.--+-.++..
T Consensus 24 ig~VpTmG~LH~GH~~LI~~a~~~ 47 (282)
T TIGR00018 24 VGFVPTMGNLHDGHMSLIDRAVAE 47 (282)
T ss_pred EEEEECCCcccHHHHHHHHHHHHh
Confidence 577788889999997766655443
No 145
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=29.16 E-value=55 Score=35.08 Aligned_cols=61 Identities=16% Similarity=0.243 Sum_probs=36.9
Q ss_pred hHHHhhccccccCChhHHHHHHHcCCceEEEecc-CCCCCCccchhhHHHH---hHHHHHHcCCCcEEEEec
Q 025688 59 HVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGR-GPSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQLT 126 (249)
Q Consensus 59 ~~l~~Rgi~~~~~d~~~ll~~~e~~k~~~iYtG~-dPSg~sLHlGHlv~~~---~l~~lQ~~g~~~v~i~Ia 126 (249)
....+.+++....+.+ +.+++|+++.|. -+|| .||+||.+.-. ...++++.-+..|....|
T Consensus 22 ~~W~~~~~f~~~~~~~------~~~~~f~i~~~PPy~nG-~lH~GH~l~~t~kD~i~Ry~rm~G~~v~~~~G 86 (975)
T PRK06039 22 KFWKENDIFEKSIENR------EGGPEFVFYDGPPTANG-LPHYGHLLTRTIKDVVPRYKTMKGYKVERRAG 86 (975)
T ss_pred HHHHHCCCcccCcccc------CCCCCEEEeCCCCCCCC-CccHhhhHhhHHHHHHHHHHHhCCCcccCcCC
Confidence 3556677776432111 235679999998 4566 89999988553 344555544344444433
No 146
>PF08013 Tagatose_6_P_K: Tagatose 6 phosphate kinase; InterPro: IPR012062 Escherichia coli and other enteric bacteria contain two closely related D-tagatose 1,6-bisphosphate (TagBP)-specific aldolases involved in catabolism of galactitol (genes gatY gatZ) and of N-acetyl-galactosamine and D-galactosamine (genes kbaY, kbaZ, also called agaY, agaZ). The catalytic subunits GatY/KbaY alone are sufficient to show aldolase activity and contain most or all of the residues that have been identified as essential in substrate/product recognition and catalysis for class II aldolases [, ]. However, these aldolases differ from other Class II aldolases (which are homodimeric enzymes) in that they require subunits GatZ/KbaZ for full activity and for good in vivo and in vitro stability. The Z subunits alone do not show any aldolase activity []. It should be noted that the previous suggestion of a tagatose 6P-kinase function for AgaZ [] and other members of this family turned out to be erroneous [, ].; GO: 0019402 galactitol metabolic process; PDB: 2FIQ_A 3TXV_A.
Probab=28.89 E-value=24 Score=34.31 Aligned_cols=63 Identities=32% Similarity=0.523 Sum_probs=39.0
Q ss_pred eEEEeccCCCCCCccchhhHHHH-hHHHHHHcCCCcE-EEEecChh-h-hhccCCCHHHHHHHHHHHHHHHHHcCCC
Q 025688 86 FYLYTGRGPSSEALHLGHLVPFM-FTKYLQDAFKVPL-VIQLTDDE-K-CMWKNLSVEESQRLARENAKDIIACGFD 158 (249)
Q Consensus 86 ~~iYtG~dPSg~sLHlGHlv~~~-~l~~lQ~~g~~~v-~i~IaD~~-k-~~~r~l~~e~i~~~~~eni~~iiA~G~d 158 (249)
+.-|||+.|.. |. ++..+-+.-+.|. -|++|-+| . ..++.++.|+.-+.+.+.++.+++.||+
T Consensus 56 ~GGYTGmtP~d----------F~~~V~~iA~~~g~~~~~iiLGGDHLGP~~w~~lpaeeAM~~A~~li~ayv~AGF~ 122 (424)
T PF08013_consen 56 FGGYTGMTPAD----------FRDFVREIADEVGFPRDRIILGGDHLGPNPWQHLPAEEAMAKAKELIRAYVEAGFT 122 (424)
T ss_dssp T-TTTTB-HHH----------HHHHHHHHHHHCT--GGGEEEEEEEESSCCCTTSBHHHHHHHHHHHHHHHHCTT--
T ss_pred cCCcCCCCHHH----------HHHHHHHHHHHcCCchhhEEecCCCCCcccccCCCHHHHHHHHHHHHHHHHHcCCc
Confidence 34577777764 32 2233333333665 45666667 3 5667799999999999999999999984
No 147
>PF03568 Peptidase_C50: Peptidase family C50; InterPro: IPR005314 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C50 (separase family, clan CD). The active site residues for members of this family and family C14 occur in the same order in the sequence: H,C. The separases are caspase-like proteases, which plays a central role in the chromosome segregation. In yeast they cleave the rad21 subunit of the cohesin complex at the onset of anaphase. During most of the cell cycle, separase is inactivated by the securin/cut2 protein, which probably covers its active site. ; GO: 0008233 peptidase activity, 0006508 proteolysis, 0005634 nucleus
Probab=28.56 E-value=96 Score=29.43 Aligned_cols=60 Identities=17% Similarity=0.274 Sum_probs=44.9
Q ss_pred hhccccccCChhHHHHHHHcCCceEEEeccCCCCCCccchhhHHHHhHHHHHHcCCCcEEEEecChhhhh
Q 025688 63 RRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCM 132 (249)
Q Consensus 63 ~Rgi~~~~~d~~~ll~~~e~~k~~~iYtG~dPSg~sLHlGHlv~~~~l~~lQ~~g~~~v~i~IaD~~k~~ 132 (249)
++|++-..-..+++.+.+. ...+++|+|=+ +|. .|+ ....+++...+++.+++|.-++.+
T Consensus 289 w~g~~g~~P~~~e~~~~l~-~~dlf~Y~GHG-~G~-----qy~---~~~~i~~~~~~~~~lL~GCsS~~l 348 (383)
T PF03568_consen 289 WKGIIGRAPTEEEFLQALT-SSDLFLYCGHG-SGE-----QYI---SGSTIQRLDCCAVSLLMGCSSGRL 348 (383)
T ss_pred CCceECCCCCHHHHHHHHH-hCCeEEEecCC-cHH-----HhC---CHhhhccccccCceEEecCCcccc
Confidence 8999988888999999988 67899999876 331 233 334455555678999999999544
No 148
>TIGR01510 coaD_prev_kdtB pantetheine-phosphate adenylyltransferase, bacterial. This model describes pantetheine-phosphate adenylyltransferase, the penultimate enzyme of coenzyme A (CoA) biosynthesis in bacteria. It does not show any strong homology to eukaryotic enzymes of coenzyme A biosynthesis. This protein was previously designated KdtB and postulated (because of cytidyltransferase homology and proximity to kdtA) to be an enzyme of LPS biosynthesis, a cytidyltransferase for 3-deoxy-D-manno-2-octulosonic acid. However, no activity toward that compound was found with either CTP or ATP. The phylogenetic distribution of this enzyme is more consistent with coenzyme A biosynthesis than with LPS biosynthesis.
Probab=28.47 E-value=1.9e+02 Score=23.53 Aligned_cols=36 Identities=28% Similarity=0.473 Sum_probs=21.7
Q ss_pred EEeccCCCCCCccchhhHHHHhHHHHHHcCCCcEEEEec-Chhh
Q 025688 88 LYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLT-DDEK 130 (249)
Q Consensus 88 iYtG~dPSg~sLHlGHlv~~~~l~~lQ~~g~~~v~i~Ia-D~~k 130 (249)
+|.| |-+.+|.||+.-+..++.. ++ .++++++ +|+|
T Consensus 3 l~gG---sFdP~H~GHl~l~~~a~~~---~d-~v~~~~~~~p~k 39 (155)
T TIGR01510 3 LYPG---SFDPVTNGHLDIIKRAAAL---FD-EVIVAVAKNPSK 39 (155)
T ss_pred EEEe---ecCCCcHHHHHHHHHHHHh---CC-EEEEEEcCCCCC
Confidence 4555 3367899998877765443 43 3555554 5554
No 149
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=28.04 E-value=3.1e+02 Score=25.02 Aligned_cols=91 Identities=14% Similarity=0.177 Sum_probs=53.3
Q ss_pred ceEEEeccCCCCCCccchhhHHHHhHHHHHHcCCCcEEEEecChhhhhccC--CCHHHHHHHHHHHHHHHHHcCCCCCce
Q 025688 85 KFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKN--LSVEESQRLARENAKDIIACGFDVTKT 162 (249)
Q Consensus 85 ~~~iYtG~dPSg~sLHlGHlv~~~~l~~lQ~~g~~~v~i~IaD~~k~~~r~--l~~e~i~~~~~eni~~iiA~G~dp~kt 162 (249)
|..++||.=.||.|----|| ...|++.|++..+++|-|-+.-..++ .-..+-++..|--+++-..--+..++.
T Consensus 2 pLVvi~G~P~SGKstrA~~L-----~~~l~~~~~K~~v~ii~deslg~~~ns~y~~s~~EK~lRg~L~S~v~R~Lsk~~i 76 (281)
T KOG3062|consen 2 PLVVICGLPCSGKSTRAVEL-----REALKERGTKQSVRIIDDESLGIEKNSNYGDSQAEKALRGKLRSAVDRSLSKGDI 76 (281)
T ss_pred CeEEEeCCCCCCchhHHHHH-----HHHHHhhcccceEEEechhhcCCCCcccccccHHHHHHHHHHHHHHHhhcccCcE
Confidence 67899999989854332222 23588888776555555444323332 111223333334443333445667788
Q ss_pred EEEEcCcCCCcccHHHHH
Q 025688 163 FIFSDFDYVGGAFYKNMV 180 (249)
Q Consensus 163 ~i~~ns~~~~~~~~~~~l 180 (249)
.|+....++++.-|++.+
T Consensus 77 VI~DslNyIKGfRYeLyC 94 (281)
T KOG3062|consen 77 VIVDSLNYIKGFRYELYC 94 (281)
T ss_pred EEEecccccccceeeeee
Confidence 999988888877776654
No 150
>PRK13964 coaD phosphopantetheine adenylyltransferase; Provisional
Probab=27.87 E-value=1.5e+02 Score=24.30 Aligned_cols=48 Identities=21% Similarity=0.381 Sum_probs=27.2
Q ss_pred eEEEeccCCCCCCccchhhHHHHhHHHHHHcCCCcEEEEec-ChhhhhccCCCHHHHH
Q 025688 86 FYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLT-DDEKCMWKNLSVEESQ 142 (249)
Q Consensus 86 ~~iYtG~dPSg~sLHlGHlv~~~~l~~lQ~~g~~~v~i~Ia-D~~k~~~r~l~~e~i~ 142 (249)
+.+|.| |-+.+|.||+--+.....+ ++ .+++.++ +++|. ...+.++-.
T Consensus 3 iai~~G---SFDPih~GHl~ii~~A~~~---~D-~v~v~v~~np~K~--~~~s~e~R~ 51 (140)
T PRK13964 3 IAIYPG---SFDPFHKGHLNILKKALKL---FD-KVYVVVSINPDKS--NASDLDSRF 51 (140)
T ss_pred EEEEee---eeCCCCHHHHHHHHHHHHh---CC-EEEEEeccCCCCC--CCCCHHHHH
Confidence 456666 3467899997766544333 54 3555555 45442 125666544
No 151
>cd02163 PPAT Phosphopantetheine adenylyltransferase. Phosphopantetheine adenylyltransferase (PPAT). PPAT is an essential enzyme in bacteria, responsible for catalyzing the rate-limiting step in coenzyme A (CoA) biosynthesis. The dinucleotide-binding fold of PPAT is homologous to class I aminoacyl-tRNA synthetases. CoA has been shown to inhibit PPAT and competes with ATP, PhP, and dPCoA. PPAT is a homohexamer in E. coli.
Probab=27.85 E-value=1.7e+02 Score=23.77 Aligned_cols=30 Identities=20% Similarity=0.380 Sum_probs=18.0
Q ss_pred CCccchhhHHHHhHHHHHHcCCCcEEEEec-Chhh
Q 025688 97 EALHLGHLVPFMFTKYLQDAFKVPLVIQLT-DDEK 130 (249)
Q Consensus 97 ~sLHlGHlv~~~~l~~lQ~~g~~~v~i~Ia-D~~k 130 (249)
+.+|.||+.-+..+... ++ .++++++ +++|
T Consensus 9 dP~H~GHl~l~~~a~~~---~d-~v~v~~~~~~~k 39 (153)
T cd02163 9 DPITNGHLDIIERASKL---FD-EVIVAVAVNPSK 39 (153)
T ss_pred CCCCHHHHHHHHHHHHH---CC-EEEEEEcCCCCC
Confidence 57899998877655432 33 3555554 4444
No 152
>cd02164 PPAT_CoAS phosphopantetheine adenylyltransferase domain of eukaryotic and archaeal bifunctional enzymes. The PPAT domain of the bifunctional enzyme with PPAT and DPCK functions. The final two steps of the CoA biosynthesis pathway are catalyzed by phosphopantetheine adenylyltransferase (PPAT) and dephospho-CoA (dPCoA) kinase (DPCK). The PPAT reaction involves the reversible adenylation of 4'-phosphopantetheine to form 3'-dPCoA and PPi, and DPCK catalyses phosphorylation of the 3'-hydroxy group of the ribose moiety of dPCoA. In eukaryotes the two enzymes are part of a large multienzyme complex . Studies in Corynebacterium ammoniagenes suggested that separate enzymes were present, and this was confirmed through identification of the bacterial PPAT/CoAD.
Probab=27.81 E-value=1.8e+02 Score=23.72 Aligned_cols=30 Identities=33% Similarity=0.468 Sum_probs=18.9
Q ss_pred CCccchhhHHHHhHHHHHHcCCCcEEEEecChh
Q 025688 97 EALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDE 129 (249)
Q Consensus 97 ~sLHlGHlv~~~~l~~lQ~~g~~~v~i~IaD~~ 129 (249)
+.+|.||..-+..+.++-. ..+++.++.+.
T Consensus 9 D~lH~GH~~Ll~~a~~~~~---d~v~vgvt~d~ 38 (143)
T cd02164 9 DRLHDGHKILLSVAFLLAG---EKLIIGVTSDE 38 (143)
T ss_pred CCCCHHHHHHHHHHHHHhc---CCcEEEEeCch
Confidence 6899999887776655532 22555455333
No 153
>PRK00777 phosphopantetheine adenylyltransferase; Provisional
Probab=27.47 E-value=1.4e+02 Score=24.58 Aligned_cols=29 Identities=38% Similarity=0.346 Sum_probs=20.3
Q ss_pred CCccchhhHHHHhHHHHHHcCCCcEEEEecChh
Q 025688 97 EALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDE 129 (249)
Q Consensus 97 ~sLHlGHlv~~~~l~~lQ~~g~~~v~i~IaD~~ 129 (249)
+.+|.||+.-+...+.+ ++ .+++.|+.++
T Consensus 11 DplH~GH~~ll~~A~~~---~d-~livgi~~d~ 39 (153)
T PRK00777 11 DPLHDGHRALLRKAFEL---GK-RVTIGLTSDE 39 (153)
T ss_pred CCCCHHHHHHHHHHHHc---CC-EEEEEEcCCc
Confidence 57999998877765544 43 4777677664
No 154
>cd02172 RfaE_N N-terminal domain of RfaE. RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in Escherichia coli, and separate proteins in other organisms. Domain I is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (this family) adds ADP to yield ADP-D-glycero-D-manno-heptose .
Probab=26.22 E-value=1.9e+02 Score=23.43 Aligned_cols=28 Identities=29% Similarity=0.407 Sum_probs=19.3
Q ss_pred CCceEEEeccCCCCCCccchhhHHHHhHHHH
Q 025688 83 GEKFYLYTGRGPSSEALHLGHLVPFMFTKYL 113 (249)
Q Consensus 83 ~k~~~iYtG~dPSg~sLHlGHlv~~~~l~~l 113 (249)
+++..+..|.= +-+|+||.--+..++.+
T Consensus 3 ~~~~vv~~G~F---DgvH~GH~~ll~~a~~~ 30 (144)
T cd02172 3 GKTVVLCHGVF---DLLHPGHVRHLQAARSL 30 (144)
T ss_pred CCEEEEEeccc---CCCCHHHHHHHHHHHHh
Confidence 45667777754 68999997766555444
No 155
>cd02039 cytidylyltransferase_like Cytidylyltransferase-like domain. Cytidylyltransferase-like domain. Many of these proteins are known to use CTP or ATP and release pyrophosphate. Protein families that contain at least one copy of this domain include citrate lyase ligase, pantoate-beta-alanine ligase, glycerol-3-phosphate cytidyltransferase, ADP-heptose synthase, phosphocholine cytidylyltransferase, lipopolysaccharide core biosynthesis protein KdtB, the bifunctional protein NadR, and a number whose function is unknown.
Probab=26.05 E-value=2.5e+02 Score=21.39 Aligned_cols=30 Identities=23% Similarity=0.308 Sum_probs=19.4
Q ss_pred CCccchhhHHHHhHHHHHHcCCCcEEEEecChh
Q 025688 97 EALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDE 129 (249)
Q Consensus 97 ~sLHlGHlv~~~~l~~lQ~~g~~~v~i~IaD~~ 129 (249)
+.+|.||+--+..++.+. + ..+++.+..++
T Consensus 9 dp~H~GH~~ll~~a~~~~--~-~~~~v~~~~~~ 38 (143)
T cd02039 9 EPFHLGHLKLIKEALEEA--L-DEVIIIIVSNP 38 (143)
T ss_pred CCcCHHHHHHHHHHHHHc--C-CceEEEEcCCC
Confidence 679999987777655543 2 34555555554
No 156
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=25.72 E-value=4.8e+02 Score=23.23 Aligned_cols=87 Identities=18% Similarity=0.191 Sum_probs=48.5
Q ss_pred CCceEEEeccCCCCCCccchhhHHHHhHHHHHHcCCCcEEEEecChhhhhccCCCHHHHHHHHHHHHHHHHHcCCCCCce
Q 025688 83 GEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKT 162 (249)
Q Consensus 83 ~k~~~iYtG~dPSg~sLHlGHlv~~~~l~~lQ~~g~~~v~i~IaD~~k~~~r~l~~e~i~~~~~eni~~iiA~G~dp~kt 162 (249)
+.++.++.|....+ ---.+...++.|+.| ...++++. |. .. ..+.+++. +..+.+.+.. + -..
T Consensus 68 ~~~~~vi~gv~~~s------t~~~i~~a~~a~~~G-ad~v~v~~-P~--~~-~~s~~~l~----~y~~~ia~~~-~-~pi 130 (289)
T PF00701_consen 68 AGRVPVIAGVGANS------TEEAIELARHAQDAG-ADAVLVIP-PY--YF-KPSQEELI----DYFRAIADAT-D-LPI 130 (289)
T ss_dssp TTSSEEEEEEESSS------HHHHHHHHHHHHHTT--SEEEEEE-ST--SS-SCCHHHHH----HHHHHHHHHS-S-SEE
T ss_pred cCceEEEecCcchh------HHHHHHHHHHHhhcC-ceEEEEec-cc--cc-cchhhHHH----HHHHHHHhhc-C-CCE
Confidence 45688999988765 222344567889887 55555444 43 11 26777877 4444444431 1 245
Q ss_pred EEEEcCcCCC-cccHHHHHHHhccC
Q 025688 163 FIFSDFDYVG-GAFYKNMVKVAKCV 186 (249)
Q Consensus 163 ~i~~ns~~~~-~~~~~~~l~l~k~~ 186 (249)
.++++-.+.+ ......+.+++++-
T Consensus 131 ~iYn~P~~tg~~ls~~~l~~L~~~~ 155 (289)
T PF00701_consen 131 IIYNNPARTGNDLSPETLARLAKIP 155 (289)
T ss_dssp EEEEBHHHHSSTSHHHHHHHHHTST
T ss_pred EEEECCCccccCCCHHHHHHHhcCC
Confidence 6676654433 24445555576643
No 157
>PLN02959 aminoacyl-tRNA ligase
Probab=24.80 E-value=66 Score=35.01 Aligned_cols=58 Identities=22% Similarity=0.224 Sum_probs=31.5
Q ss_pred HHHhhccccccCChhHHHHHHHcC-CceEEEec-cCCCCCCccchhhHHHH---hHHHHHHcCCCcEEE
Q 025688 60 VFLRRGVFFAHRDLNDILDAYEKG-EKFYLYTG-RGPSSEALHLGHLVPFM---FTKYLQDAFKVPLVI 123 (249)
Q Consensus 60 ~l~~Rgi~~~~~d~~~ll~~~e~~-k~~~iYtG-~dPSg~sLHlGHlv~~~---~l~~lQ~~g~~~v~i 123 (249)
...+.+++..-.+.. + .++ .+|++=.| =-++| .||+||.+... +..++|+.-+..+..
T Consensus 25 ~W~~~~~fe~~~~~~---~--~~~~~kf~i~~ppPY~NG-~lHiGHa~t~t~~D~i~Rykrm~G~~vlf 87 (1084)
T PLN02959 25 WWEEEKVFEAEAGDE---P--PKPGEKFFGNFPYPYMNG-LLHLGHAFSLSKLEFAAAYHRLRGANVLL 87 (1084)
T ss_pred HHHhcCCcccCcccc---c--CCCCCcEEEeCCCCCCCC-CcchhhHHHHHHHHHHHHHHHcCCCccCC
Confidence 445667776533210 0 112 33444333 34577 99999988664 356777764444444
No 158
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional
Probab=24.38 E-value=87 Score=34.55 Aligned_cols=63 Identities=14% Similarity=0.193 Sum_probs=37.2
Q ss_pred hHHHhhccccccCChhHHHHHHHcCCceEEEeccC-CCCCCccchhhHHHH---hHHHHHHcCCCcEEEEecCh
Q 025688 59 HVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRG-PSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQLTDD 128 (249)
Q Consensus 59 ~~l~~Rgi~~~~~d~~~ll~~~e~~k~~~iYtG~d-PSg~sLHlGHlv~~~---~l~~lQ~~g~~~v~i~IaD~ 128 (249)
....+.|++....+. -+.+++|.+|.|-= +|| .+|+||++... .+.++++.-+..|....|=+
T Consensus 83 ~~W~e~~~f~~~~~~------~~~~~~Fv~~~gPPyanG-~lHiGHal~~tikDii~Ry~rm~G~~V~~~~GwD 149 (1205)
T PTZ00427 83 KYWKSIDAFNTSNKL------AKNKKAYIFYDGPPFATG-LPHYGHLLAGIIKDCVTRYFYQCGFSVERKFGWD 149 (1205)
T ss_pred HHHHhCCCcccCccc------cCCCCcEEEecCCCCCCC-CcchhHHHHHHHHHHHHHHHHcCCCeeccCCccC
Confidence 455667777643221 12345688899973 566 99999988543 24455554445555554433
No 159
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=24.14 E-value=1.7e+02 Score=20.84 Aligned_cols=42 Identities=17% Similarity=0.097 Sum_probs=27.6
Q ss_pred HHcCCceEEEeccCCCCCCccchhhHHHHhHHHHHHcCCCcEEEEecChhhh
Q 025688 80 YEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKC 131 (249)
Q Consensus 80 ~e~~k~~~iYtG~dPSg~sLHlGHlv~~~~l~~lQ~~g~~~v~i~IaD~~k~ 131 (249)
+.+++++.+||.-+..+ ......|+..|+..++++-+...++
T Consensus 53 ~~~~~~ivv~c~~g~~s----------~~a~~~l~~~G~~~v~~l~gG~~~w 94 (96)
T cd01444 53 LDRDRPVVVYCYHGNSS----------AQLAQALREAGFTDVRSLAGGFEAW 94 (96)
T ss_pred cCCCCCEEEEeCCCChH----------HHHHHHHHHcCCceEEEcCCCHHHh
Confidence 34578999999844443 3445678888877777665555443
No 160
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=23.86 E-value=5.1e+02 Score=22.89 Aligned_cols=95 Identities=13% Similarity=0.178 Sum_probs=55.6
Q ss_pred hccccccCCh--hHHHHHHHcCCceEEEeccCCCCC----CccchhhHHH-HhHHHHHHcCCCc-EEEEecChhhhhccC
Q 025688 64 RGVFFAHRDL--NDILDAYEKGEKFYLYTGRGPSSE----ALHLGHLVPF-MFTKYLQDAFKVP-LVIQLTDDEKCMWKN 135 (249)
Q Consensus 64 Rgi~~~~~d~--~~ll~~~e~~k~~~iYtG~dPSg~----sLHlGHlv~~-~~l~~lQ~~g~~~-v~i~IaD~~k~~~r~ 135 (249)
.|+|...... +.+..+.+.+-| .+.+|..+..+ +..+-|+-.. ..+++|-+.||.. +.++-++.+..+.+
T Consensus 58 DGiI~~s~~~~~~~l~~~~~~~iP-vV~~~~~~~~~~~~~~V~~D~~~a~~~a~~~Li~~Gh~~~I~~i~~~~~~~~~~- 135 (279)
T PF00532_consen 58 DGIILASSENDDEELRRLIKSGIP-VVLIDRYIDNPEGVPSVYIDNYEAGYEATEYLIKKGHRRPIAFIGGPEDSSTSR- 135 (279)
T ss_dssp SEEEEESSSCTCHHHHHHHHTTSE-EEEESS-SCTTCTSCEEEEEHHHHHHHHHHHHHHTTCCSTEEEEEESTTTHHHH-
T ss_pred CEEEEecccCChHHHHHHHHcCCC-EEEEEeccCCcccCCEEEEcchHHHHHHHHHHHhcccCCeEEEEecCcchHHHH-
Confidence 4666654433 466666665455 67777774443 4557787766 4588999999999 86666554432211
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCCCCceEEEEc
Q 025688 136 LSVEESQRLARENAKDIIACGFDVTKTFIFSD 167 (249)
Q Consensus 136 l~~e~i~~~~~eni~~iiA~G~dp~kt~i~~n 167 (249)
+..+ -..+.+.+.|++.+...++..
T Consensus 136 ---~R~~----Gy~~Al~~~Gl~~~~~~i~~~ 160 (279)
T PF00532_consen 136 ---ERLQ----GYRDALKEAGLPIDEEWIFEG 160 (279)
T ss_dssp ---HHHH----HHHHHHHHTTSCEEEEEEEES
T ss_pred ---HHHH----HHHHHHHHcCCCCCccccccc
Confidence 1121 344456668885555555543
No 161
>PRK00071 nadD nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=23.50 E-value=2.7e+02 Score=23.64 Aligned_cols=26 Identities=23% Similarity=0.250 Sum_probs=18.6
Q ss_pred CCceEEEeccCCCCCCccchhhHHHHhHH
Q 025688 83 GEKFYLYTGRGPSSEALHLGHLVPFMFTK 111 (249)
Q Consensus 83 ~k~~~iYtG~dPSg~sLHlGHlv~~~~l~ 111 (249)
.+++.+|.|-- +.+|.||+.-+..++
T Consensus 3 ~~~i~i~gGsF---dP~H~GH~~l~~~a~ 28 (203)
T PRK00071 3 MKRIGLFGGTF---DPPHYGHLAIAEEAA 28 (203)
T ss_pred CcEEEEEeeCC---CccCHHHHHHHHHHH
Confidence 34677888743 679999987776554
No 162
>PRK00380 panC pantoate--beta-alanine ligase; Reviewed
Probab=23.45 E-value=84 Score=28.79 Aligned_cols=35 Identities=26% Similarity=0.200 Sum_probs=21.4
Q ss_pred eccCCCCCCccchhhHHHHhHHHHHHcCCCcEEEEecChh
Q 025688 90 TGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDE 129 (249)
Q Consensus 90 tG~dPSg~sLHlGHlv~~~~l~~lQ~~g~~~v~i~IaD~~ 129 (249)
+|+=||=+.+|.||.--+-.++... +.+++--++|
T Consensus 24 i~~v~tmG~lH~GH~~Li~~a~~~a-----~~vVvTf~~~ 58 (281)
T PRK00380 24 IGLVPTMGALHEGHLSLVREARAEA-----DIVVVSIFVN 58 (281)
T ss_pred EEEEEccCceeHHHHHHHHHHHHhC-----CEEEEeCCCC
Confidence 3555676789999976665544322 3555555555
No 163
>PF01467 CTP_transf_2: Cytidylyltransferase; InterPro: IPR004820 This family includes []: Cholinephosphate cytidyltransferase (P49585 from SWISSPROT). Glycerol-3-phosphate cytidyltransferase (P27623 from SWISSPROT). CTP:cholinephosphate cytidylyltransferase (CCT) is a key regulatory enzyme in phosphatidylcholine biosynthesis that catalyzes the formation of CDP-choline. A comparison of the catalytic domains of CCTs from a wide variety of organisms reveals a large number of completely conserved residues. There may be a role for the conserved HXGH sequence in catalysis. The membrane-binding domain in rat CCT has been defined, and it has been suggested that lipids may play a role in inactivating the enzyme. A phosphorylation domain has been described [].; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1O6B_A 1H1T_A 1B6T_A 1GN8_A 1QJC_A 3ELB_A 3NBK_A 3NBA_A 1TFU_A 3LCJ_A ....
Probab=22.88 E-value=1.4e+02 Score=23.08 Aligned_cols=43 Identities=23% Similarity=0.284 Sum_probs=22.5
Q ss_pred CCccchhhHHHHhHHHHHHcCCC-cEEEEecChhhhh-cc-CCCHHHHH
Q 025688 97 EALHLGHLVPFMFTKYLQDAFKV-PLVIQLTDDEKCM-WK-NLSVEESQ 142 (249)
Q Consensus 97 ~sLHlGHlv~~~~l~~lQ~~g~~-~v~i~IaD~~k~~-~r-~l~~e~i~ 142 (249)
+.+|.||+--+..++ +.++. .++++.+|-+... .+ ..+.++-.
T Consensus 7 dP~H~GH~~~l~~a~---~~~~~~~vi~v~~~~~~~k~~~~~~~~~~R~ 52 (157)
T PF01467_consen 7 DPPHNGHLNLLREAR---ELFDEDLVIVVPSDNSPHKDKKPIFSFEERL 52 (157)
T ss_dssp TT--HHHHHHHHHHH---HHSSESEEEEEEEEHHCHSTTSSSSTHHHHH
T ss_pred CcccHHHHHHHHHHH---HhccccccccccccccccccccccCcHHHHH
Confidence 679999976655443 33433 2566666666322 12 35666555
No 164
>PLN02406 ethanolamine-phosphate cytidylyltransferase
Probab=22.88 E-value=2.2e+02 Score=27.77 Aligned_cols=44 Identities=23% Similarity=0.316 Sum_probs=27.4
Q ss_pred HHHHcCCceEEEec--cCCCCCCccchhhHHHHhHHHHHHcCCCcEEEEecChh
Q 025688 78 DAYEKGEKFYLYTG--RGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDE 129 (249)
Q Consensus 78 ~~~e~~k~~~iYtG--~dPSg~sLHlGHlv~~~~l~~lQ~~g~~~v~i~IaD~~ 129 (249)
...+..++.++|++ || .+|.||.--+...+.+ |+ .+++-|.-++
T Consensus 46 ~~~~~~~~~rV~~~G~FD----llH~GH~~~L~qAk~l---Gd-~LIVGV~SDe 91 (418)
T PLN02406 46 KKKKKKKPVRVYMDGCFD----MMHYGHANALRQARAL---GD-ELVVGVVSDE 91 (418)
T ss_pred ccccCCCceEEEEcCeeC----CCCHHHHHHHHHHHHh---CC-EEEEEEecCh
Confidence 33444667888886 55 7999997766655444 64 3555444443
No 165
>PRK13670 hypothetical protein; Provisional
Probab=22.67 E-value=1.5e+02 Score=28.43 Aligned_cols=26 Identities=31% Similarity=0.465 Sum_probs=18.3
Q ss_pred CccchhhHHHHhHHHHHHcCCCcEEEE
Q 025688 98 ALHLGHLVPFMFTKYLQDAFKVPLVIQ 124 (249)
Q Consensus 98 sLHlGHlv~~~~l~~lQ~~g~~~v~i~ 124 (249)
.+|.||.-.+-.++..-.+ +.+++++
T Consensus 12 g~H~GH~~~i~~a~~~a~~-~~~~~Vm 37 (388)
T PRK13670 12 PFHNGHLYHLNQAKKLTNA-DVTIAVM 37 (388)
T ss_pred CcCHHHHHHHHHHHHHHhC-CCcEEEe
Confidence 5899998888777776665 4555555
No 166
>PF14261 DUF4351: Domain of unknown function (DUF4351)
Probab=21.93 E-value=85 Score=21.85 Aligned_cols=30 Identities=23% Similarity=0.420 Sum_probs=20.9
Q ss_pred HHHHHhCCCCCCHHHHHHHHHhcCCChhHHHh
Q 025688 32 KLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLR 63 (249)
Q Consensus 32 kl~~~fg~~~i~~~~~~r~~~~~~~~~~~l~~ 63 (249)
-|-++|| .+++++.+||+.++-..+..|-.
T Consensus 15 lL~rrFG--~lp~~~~~~I~~l~~eqLE~l~e 44 (59)
T PF14261_consen 15 LLTRRFG--ELPPEIQERIQQLSLEQLEALAE 44 (59)
T ss_pred HHHHHcC--CCCHHHHHHHHcCCHHHHHHHHH
Confidence 3556799 78888889998886444444444
No 167
>PF14117 DUF4287: Domain of unknown function (DUF4287)
Probab=21.66 E-value=77 Score=22.45 Aligned_cols=18 Identities=17% Similarity=0.407 Sum_probs=15.1
Q ss_pred HHHHHHHhcCCChhHHHh
Q 025688 46 LVDRVQRLTGRPPHVFLR 63 (249)
Q Consensus 46 ~~~r~~~~~~~~~~~l~~ 63 (249)
.+++||+-||+++..+++
T Consensus 5 y~~~Ie~kTGk~~~~W~~ 22 (61)
T PF14117_consen 5 YLPNIEKKTGKTLDEWLA 22 (61)
T ss_pred HHhHhHHHHCcCHHHHHH
Confidence 679999999998877655
No 168
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional
Probab=21.34 E-value=1e+02 Score=33.09 Aligned_cols=60 Identities=13% Similarity=0.158 Sum_probs=35.1
Q ss_pred HHHhhccccccCChhHHHHHHHcCCceEEEeccC-CCCCCccchhhHHHH---hHHHHHHcCCCcEEEEec
Q 025688 60 VFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRG-PSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQLT 126 (249)
Q Consensus 60 ~l~~Rgi~~~~~d~~~ll~~~e~~k~~~iYtG~d-PSg~sLHlGHlv~~~---~l~~lQ~~g~~~v~i~Ia 126 (249)
...+.+++....+ .-+.+++|++..|.= ++| .||+||.+.-. ...+++..-+..+....|
T Consensus 36 ~W~~~~~y~~~~~------~~~~~~~f~l~dgPPyanG-~lHiGHaln~~lkDii~Ry~rm~G~~v~~~pG 99 (961)
T PRK13804 36 RWEEIDLYKKLRE------QAKGRPKFVLHDGPPYANG-NIHIGHALNKILKDVIVRSKQMLGFDANYVPG 99 (961)
T ss_pred HHHHCCCcccccc------ccCCCCcEEEeCCCCCCCC-CccHHHHHHHHHHHHHHHHHHhcCCcccCCCC
Confidence 4456677654321 112345688888874 566 89999988553 344566544444544433
No 169
>PRK01170 phosphopantetheine adenylyltransferase/unknown domain fusion protein; Provisional
Probab=21.30 E-value=2.3e+02 Score=26.55 Aligned_cols=50 Identities=24% Similarity=0.199 Sum_probs=29.4
Q ss_pred CCCccchhhHHHHhHHHHHHcCCCcEEEEecChhhhh-c--cCCCHHHHHHHHHHHHHHHH
Q 025688 96 SEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCM-W--KNLSVEESQRLARENAKDII 153 (249)
Q Consensus 96 g~sLHlGHlv~~~~l~~lQ~~g~~~v~i~IaD~~k~~-~--r~l~~e~i~~~~~eni~~ii 153 (249)
=+.||.||..-+-..+. .| ..+++-++.++-.. . ++.+.++-. ++++.++
T Consensus 9 FD~lH~GH~~lL~~A~~---~g-d~LiVgvt~D~~~~~~k~~~~~~e~R~----~~v~~fl 61 (322)
T PRK01170 9 FSKLHKGHKALLKKAIE---TG-DEVVIGLTSDEYVRKNKVYPIPYEDRK----RKLENFI 61 (322)
T ss_pred cccCChHHHHHHHHHHH---cC-CEEEEEEccHHHHHhcCCCCCCHHHHH----HHHHHHH
Confidence 36899999886665433 35 35777788776321 1 124555444 5555554
No 170
>PLN02417 dihydrodipicolinate synthase
Probab=21.02 E-value=6.1e+02 Score=22.71 Aligned_cols=85 Identities=16% Similarity=0.098 Sum_probs=46.9
Q ss_pred CCceEEEeccCCCCCCccchhhHHHHhHHHHHHcCCCcEEEEecChhhhhccCCCHHHHHHHHHHHHHHHHHcCCCCCce
Q 025688 83 GEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKT 162 (249)
Q Consensus 83 ~k~~~iYtG~dPSg~sLHlGHlv~~~~l~~lQ~~g~~~v~i~IaD~~k~~~r~l~~e~i~~~~~eni~~iiA~G~dp~kt 162 (249)
.+++.++.|...++ ---.+...++.++.| ...+++ .=|. + .+ .+.+++. +..+.+.... .+
T Consensus 68 ~~~~pvi~gv~~~~------t~~~i~~a~~a~~~G-adav~~-~~P~-y-~~-~~~~~i~----~~f~~va~~~----pi 128 (280)
T PLN02417 68 GGKIKVIGNTGSNS------TREAIHATEQGFAVG-MHAALH-INPY-Y-GK-TSQEGLI----KHFETVLDMG----PT 128 (280)
T ss_pred CCCCcEEEECCCcc------HHHHHHHHHHHHHcC-CCEEEE-cCCc-c-CC-CCHHHHH----HHHHHHHhhC----CE
Confidence 45677888887654 122334567788888 454433 3354 2 12 5667777 4444554443 47
Q ss_pred EEEEcCcCCC-cccHHHHHHHhccC
Q 025688 163 FIFSDFDYVG-GAFYKNMVKVAKCV 186 (249)
Q Consensus 163 ~i~~ns~~~~-~~~~~~~l~l~k~~ 186 (249)
.+||+-...+ ....+.+.+++++-
T Consensus 129 ~lYn~P~~tg~~l~~~~l~~l~~~p 153 (280)
T PLN02417 129 IIYNVPGRTGQDIPPEVIFKIAQHP 153 (280)
T ss_pred EEEEChhHhCcCCCHHHHHHHhcCC
Confidence 7887765433 23445555566543
No 171
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=20.78 E-value=2.9e+02 Score=20.11 Aligned_cols=40 Identities=8% Similarity=-0.027 Sum_probs=28.0
Q ss_pred CCceEEEeccCCCCCCccchhhHHHHhHHHHHHcCCCcEEEEecChhhhh
Q 025688 83 GEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCM 132 (249)
Q Consensus 83 ~k~~~iYtG~dPSg~sLHlGHlv~~~~l~~lQ~~g~~~v~i~IaD~~k~~ 132 (249)
++++.+||+-+-.+ .....+|.+.|...+.++-|..+++.
T Consensus 58 ~~~vv~~c~~g~rs----------~~~~~~l~~~G~~~v~~l~GG~~~w~ 97 (101)
T cd01528 58 DKDIVVLCHHGGRS----------MQVAQWLLRQGFENVYNLQGGIDAWS 97 (101)
T ss_pred CCeEEEEeCCCchH----------HHHHHHHHHcCCccEEEecCCHHHHh
Confidence 67899999754222 34456777888777888888777653
No 172
>TIGR01518 g3p_cytidyltrns glycerol-3-phosphate cytidylyltransferase. Glycerol-3-phosphate cytidyltransferase acts in pathways of teichoic acid biosynthesis. Teichoic acids are substituted polymers, linked by phosphodiester bonds, of glycerol, ribitol, etc. An example is poly(glycerol phosphate), the major teichoic acid of the Bacillus subtilis cell wall. Most but not all species encoding proteins in this family are Gram-positive bacteria.
Probab=20.45 E-value=1.6e+02 Score=22.92 Aligned_cols=17 Identities=35% Similarity=0.483 Sum_probs=12.0
Q ss_pred CCccchhhHHHHhHHHH
Q 025688 97 EALHLGHLVPFMFTKYL 113 (249)
Q Consensus 97 ~sLHlGHlv~~~~l~~l 113 (249)
+-+|+||.--+..++.+
T Consensus 8 Dg~H~GH~~~l~~a~~~ 24 (125)
T TIGR01518 8 DLLHWGHINLLERAKQL 24 (125)
T ss_pred CCCCHHHHHHHHHHHHc
Confidence 57999997766655443
No 173
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=20.31 E-value=3.1e+02 Score=25.79 Aligned_cols=23 Identities=30% Similarity=0.352 Sum_probs=17.4
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCC
Q 025688 136 LSVEESQRLARENAKDIIACGFD 158 (249)
Q Consensus 136 l~~e~i~~~~~eni~~iiA~G~d 158 (249)
.+.-.+.+.+++.++-+-|.|+|
T Consensus 123 G~lGGlS~at~~~i~~ldAaG~D 145 (323)
T COG1703 123 GTLGGLSRATREAIKLLDAAGYD 145 (323)
T ss_pred ccchhhhHHHHHHHHHHHhcCCC
Confidence 34455677777888888899987
No 174
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=20.24 E-value=1.1e+02 Score=30.39 Aligned_cols=23 Identities=35% Similarity=0.407 Sum_probs=18.4
Q ss_pred EeccCCCCCCccchhhHHHHhHH
Q 025688 89 YTGRGPSSEALHLGHLVPFMFTK 111 (249)
Q Consensus 89 YtG~dPSg~sLHlGHlv~~~~l~ 111 (249)
=+||=||-+.||=||+--+-..+
T Consensus 21 ~ig~VPTMG~LH~GHlsLi~~A~ 43 (512)
T PRK13477 21 TIGFVPTMGALHQGHLSLIRRAR 43 (512)
T ss_pred cEEEECCCcchhHHHHHHHHHHH
Confidence 57999999999999976555443
No 175
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=20.01 E-value=3.3e+02 Score=25.19 Aligned_cols=53 Identities=17% Similarity=0.079 Sum_probs=30.3
Q ss_pred eEEEeccCCCCCCccchhhHHHHhHHHHHHcCCCcEEEEecC--hhhhhccCCCHHHHHHHH
Q 025688 86 FYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTD--DEKCMWKNLSVEESQRLA 145 (249)
Q Consensus 86 ~~iYtG~dPSg~sLHlGHlv~~~~l~~lQ~~g~~~v~i~IaD--~~k~~~r~l~~e~i~~~~ 145 (249)
+.+|.|-- +.+|.||+-.+.....+ . -.++|+++. +++......+.++-.++.
T Consensus 3 i~i~~GsF---dP~H~GHl~ii~~a~~~---~-d~v~v~~~~~~~~~~~~~~~~~~~R~~~l 57 (325)
T TIGR01526 3 IGVVFGKF---YPLHTGHIYLIYEAFSK---V-DELHIVVGSLFYDSKAKRPPPVQDRLRWL 57 (325)
T ss_pred EEEEeecc---CCCCHHHHHHHHHHHHH---C-CEEEEEECCCCcCccCCCCCCHHHHHHHH
Confidence 56776632 56999998877765554 3 246666665 231112236666555333
Done!