Query 025688
Match_columns 249
No_of_seqs 243 out of 1738
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 15:27:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025688.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025688hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hv0_A Tryptophanyl-tRNA synth 100.0 2.3E-69 8E-74 507.6 10.9 228 16-244 3-233 (393)
2 3tze_A Tryptophanyl-tRNA synth 100.0 3.7E-68 1.3E-72 501.0 14.1 231 10-244 20-256 (406)
3 3i05_A Tryptophanyl-tRNA synth 100.0 2.8E-67 9.7E-72 493.8 14.4 229 13-244 8-237 (395)
4 3jxe_A Tryptophanyl-tRNA synth 100.0 5.2E-65 1.8E-69 477.9 16.0 218 12-244 2-220 (392)
5 3hzr_A Tryptophanyl-tRNA synth 100.0 8.8E-65 3E-69 475.5 13.3 226 15-244 12-237 (386)
6 2ip1_A Tryptophanyl-tRNA synth 100.0 1.6E-64 5.5E-69 480.0 14.8 234 10-244 20-262 (432)
7 1r6t_A Tryptophanyl-tRNA synth 100.0 2.9E-64 9.9E-69 483.3 14.3 233 11-244 79-316 (477)
8 3foc_A Tryptophanyl-tRNA synth 100.0 1.5E-63 5E-68 474.1 15.9 213 26-244 32-246 (451)
9 1r6u_A Tryptophanyl-tRNA synth 100.0 3.6E-64 1.2E-68 477.6 11.4 234 10-244 31-269 (437)
10 3a04_A Tryptophanyl-tRNA synth 100.0 1.6E-63 5.4E-68 465.5 12.5 219 13-244 2-221 (372)
11 2yxn_A Tyrosyl-tRNA synthetase 100.0 3E-42 1E-46 316.4 5.5 177 58-244 7-204 (322)
12 2jan_A Tyrosyl-tRNA synthetase 100.0 1.2E-40 4.1E-45 315.9 8.1 178 58-244 6-200 (432)
13 3prh_A Tryptophanyl-tRNA synth 100.0 3.3E-40 1.1E-44 309.1 9.2 163 65-244 10-184 (388)
14 2cyc_A Tyrosyl-tRNA synthetase 100.0 2.4E-40 8.2E-45 309.3 7.8 172 60-244 8-193 (375)
15 2ts1_A Tyrosyl-tRNA synthetase 100.0 6.1E-40 2.1E-44 310.2 6.2 178 58-244 4-198 (419)
16 2cya_A Tyrosyl-tRNA synthetase 100.0 2.2E-39 7.6E-44 301.7 8.2 171 60-244 11-190 (364)
17 1jil_A Tyrrs, tyrosyl-tRNA syn 100.0 5E-39 1.7E-43 304.3 8.1 177 58-244 6-199 (420)
18 1h3f_A Tyrosyl-tRNA synthetase 100.0 6.3E-39 2.2E-43 304.4 7.7 170 58-244 11-200 (432)
19 2cyb_A Tyrosyl-tRNA synthetase 100.0 7.4E-38 2.5E-42 287.0 11.7 171 60-244 8-183 (323)
20 2pid_A Tyrosyl-tRNA synthetase 100.0 8.6E-39 3E-43 297.0 4.8 178 58-244 12-223 (356)
21 2j5b_A Tyrosyl-tRNA synthetase 100.0 2.1E-38 7.1E-43 293.6 7.3 174 60-244 16-199 (348)
22 1y42_X Tyrosyl-tRNA synthetase 100.0 1.5E-37 5.2E-42 291.8 8.8 178 58-244 37-245 (392)
23 2zp1_A Tyrosyl-tRNA synthetase 100.0 4.1E-37 1.4E-41 281.3 10.7 167 60-244 5-176 (314)
24 3vgj_A Tyrosyl-tRNA synthetase 100.0 2.9E-37 1E-41 288.2 8.3 171 60-244 32-213 (373)
25 1n3l_A Tyrosyl-tRNA synthetase 100.0 8.6E-36 3E-40 278.2 11.7 171 59-244 11-191 (372)
26 3tzl_A Tryptophanyl-tRNA synth 100.0 2.3E-36 7.7E-41 277.4 6.9 143 85-244 3-152 (322)
27 2g36_A Tryptophanyl-tRNA synth 100.0 1.9E-36 6.5E-41 279.7 5.9 145 85-244 12-166 (340)
28 2el7_A Tryptophanyl-tRNA synth 100.0 9.7E-36 3.3E-40 274.7 7.0 144 87-244 3-154 (337)
29 1yi8_B Tryptophanyl-tRNA synth 100.0 3.8E-35 1.3E-39 272.0 7.7 146 83-244 20-175 (351)
30 3sz3_A Tryptophanyl-tRNA synth 100.0 3.9E-35 1.3E-39 271.0 7.4 142 86-244 7-156 (341)
31 3p0j_A Tyrosyl-tRNA synthetase 100.0 1.1E-34 3.9E-39 288.5 10.4 171 60-244 16-196 (690)
32 2dlc_X Tyrosyl-tRNA synthetase 100.0 3E-34 1E-38 269.7 10.1 171 60-244 14-195 (394)
33 3n9i_A Tryptophanyl-tRNA synth 100.0 6.7E-35 2.3E-39 269.7 4.9 143 85-244 15-165 (346)
34 2yy5_A Tryptophanyl-tRNA synth 100.0 3E-34 1E-38 265.7 7.1 144 84-244 3-160 (348)
35 1i6k_A TRPRS, tryptophanyl-tRN 100.0 2.7E-34 9.3E-39 264.1 6.1 141 87-244 3-150 (328)
36 3p0j_A Tyrosyl-tRNA synthetase 99.9 2.4E-28 8.2E-33 243.1 10.8 150 83-249 380-536 (690)
37 1nzj_A Hypothetical protein YA 96.1 0.011 3.8E-07 53.1 6.9 89 93-193 13-110 (298)
38 1j09_A Glutamyl-tRNA synthetas 94.7 0.025 8.4E-07 53.9 4.5 70 93-171 9-86 (468)
39 4g6z_A Glutamate-tRNA ligase; 94.6 0.091 3.1E-06 50.3 8.3 78 85-171 25-102 (490)
40 3al0_C Glutamyl-tRNA(Gln) amid 94.6 0.034 1.2E-06 54.4 5.4 79 85-171 129-214 (592)
41 2cfo_A Glutamyl-tRNA synthetas 94.5 0.11 3.6E-06 49.8 8.4 71 92-172 8-79 (492)
42 3afh_A Glutamyl-tRNA synthetas 94.5 0.052 1.8E-06 51.9 6.2 78 85-171 25-110 (488)
43 3aii_A Glutamyl-tRNA synthetas 94.5 0.074 2.5E-06 51.7 7.3 86 85-181 96-181 (553)
44 2ja2_A Glutamyl-tRNA synthetas 93.9 0.054 1.9E-06 52.0 5.1 70 93-171 14-91 (498)
45 1qtq_A GLNRS, protein (glutami 93.4 0.3 1E-05 47.4 9.3 94 78-181 17-112 (553)
46 1irx_A Lysyl-tRNA synthetase; 93.3 0.1 3.5E-06 50.0 5.8 44 85-129 21-68 (523)
47 3u1f_A Methionyl-tRNA syntheta 93.0 0.23 8E-06 47.2 7.9 79 80-160 5-96 (542)
48 2hz7_A Glutaminyl-tRNA synthet 93.0 0.24 8.2E-06 50.4 8.2 94 78-181 57-152 (851)
49 3h99_A Methionyl-tRNA syntheta 92.7 0.34 1.2E-05 46.5 8.5 78 83-161 17-106 (560)
50 3foc_A Tryptophanyl-tRNA synth 91.6 0.0085 2.9E-07 56.9 -4.0 23 222-244 275-300 (451)
51 4dlp_A Aminoacyl-tRNA syntheta 89.6 1.4 4.9E-05 41.9 9.4 76 83-160 24-112 (536)
52 1li5_A Cysrs, cysteinyl-tRNA s 89.0 1.1 3.7E-05 42.2 8.0 74 85-159 22-107 (461)
53 2csx_A Methionyl-tRNA syntheta 88.5 1.3 4.3E-05 41.7 8.1 80 87-169 7-99 (497)
54 1rqg_A Methionyl-tRNA syntheta 88.1 1.4 4.9E-05 43.8 8.5 77 84-161 2-91 (722)
55 3c8z_A Cysteinyl-tRNA syntheta 87.9 1.3 4.5E-05 40.9 7.7 84 83-169 38-133 (414)
56 2d5b_A Methionyl-tRNA syntheta 87.8 2.4 8.1E-05 39.8 9.5 73 87-160 5-90 (500)
57 3kfl_A Methionyl-tRNA syntheta 87.5 1.4 4.8E-05 42.4 7.9 77 83-160 25-113 (564)
58 4arc_A Leucine--tRNA ligase; l 87.0 2.3 7.8E-05 43.4 9.4 92 59-160 36-140 (880)
59 3sp1_A Cysteinyl-tRNA syntheta 86.6 2.3 7.8E-05 40.7 8.6 83 86-170 43-147 (501)
60 2x1l_A Methionyl-tRNA syntheta 86.4 3.5 0.00012 38.9 9.9 76 84-160 12-99 (524)
61 3tqo_A Cysteinyl-tRNA syntheta 86.3 1.4 4.8E-05 41.7 7.0 76 84-160 24-111 (462)
62 2o5r_A Glutamyl-tRNA synthetas 84.9 1.5 5.2E-05 41.6 6.5 78 86-171 14-98 (481)
63 4gri_A Glutamate--tRNA ligase; 84.0 1.8 6.1E-05 41.4 6.6 71 93-171 32-109 (512)
64 2v0c_A Aminoacyl-tRNA syntheta 77.6 3.1 0.00011 42.4 6.1 91 60-160 16-120 (878)
65 1ffy_A Isoleucyl-tRNA syntheta 74.6 3.7 0.00013 42.0 5.8 47 82-129 46-97 (917)
66 3oqi_A YVMC, putative uncharac 72.7 48 0.0016 28.9 11.6 94 80-180 26-130 (257)
67 1f7u_A Arginyl-tRNA synthetase 71.0 3.1 0.00011 40.6 4.0 44 84-128 143-192 (607)
68 1iq0_A Arginyl-tRNA synthetase 69.3 2.8 9.6E-05 40.6 3.3 42 86-128 106-152 (592)
69 1gax_A Valrs, valyl-tRNA synth 67.3 4.6 0.00016 41.0 4.5 60 60-129 19-82 (862)
70 1ile_A Ilers, isoleucyl-tRNA s 66.5 3.5 0.00012 41.4 3.4 47 82-129 36-87 (821)
71 2zue_A Arginyl-tRNA synthetase 65.2 4.5 0.00015 39.6 3.8 44 84-128 119-168 (629)
72 1qjc_A Phosphopantetheine aden 52.4 31 0.0011 26.5 6.1 40 85-130 2-41 (158)
73 1wz2_A Leucyl-tRNA synthetase; 47.6 8.5 0.00029 39.5 2.5 57 60-123 16-77 (967)
74 3fnr_A Arginyl-tRNA synthetase 45.2 19 0.00067 33.8 4.4 46 83-130 29-81 (464)
75 3nv7_A Phosphopantetheine aden 43.7 55 0.0019 25.9 6.3 49 85-142 3-52 (157)
76 3oqv_A ALBC; rossman fold, cyc 43.0 60 0.0021 28.1 6.8 92 86-180 30-132 (247)
77 3do8_A Phosphopantetheine aden 40.5 95 0.0032 24.1 7.2 57 87-149 3-62 (148)
78 3k9w_A Phosphopantetheine aden 38.4 87 0.003 25.5 6.9 51 84-142 22-72 (187)
79 3f3m_A Phosphopantetheine aden 38.3 47 0.0016 26.6 5.2 50 84-142 3-53 (168)
80 1wkb_A Leucyl-tRNA synthetase; 37.9 13 0.00044 37.2 2.0 57 60-124 16-77 (810)
81 3jtz_A Integrase; four strande 37.5 23 0.0008 25.5 2.9 37 119-161 47-83 (88)
82 2oho_A Glutamate racemase; iso 32.9 1.3E+02 0.0045 25.5 7.5 64 83-158 12-76 (273)
83 4f3r_A Phosphopantetheine aden 31.9 88 0.003 24.8 5.8 49 85-142 6-55 (162)
84 1o6b_A Phosphopantetheine aden 30.3 82 0.0028 24.4 5.3 49 85-142 3-52 (169)
85 2vvt_A Glutamate racemase; iso 29.7 1.3E+02 0.0044 25.9 6.9 64 83-158 24-88 (290)
86 3nbk_A Phosphopantetheine aden 28.3 78 0.0027 25.7 4.9 53 83-144 20-73 (177)
87 3h05_A Uncharacterized protein 27.9 77 0.0026 25.4 4.9 53 85-145 3-55 (177)
88 3nd5_A Phosphopantetheine aden 27.5 1.2E+02 0.0039 24.3 5.8 49 85-142 3-52 (171)
89 1lw7_A Transcriptional regulat 26.9 99 0.0034 27.2 5.8 39 84-128 2-40 (365)
90 2g9p_A Antimicrobial peptide l 26.7 16 0.00054 20.2 0.3 17 30-46 3-19 (26)
91 2qjt_B Nicotinamide-nucleotide 25.8 74 0.0025 27.5 4.7 55 85-146 8-64 (352)
92 1cv8_A Staphopain; cysteine pr 25.5 46 0.0016 27.3 3.0 78 27-109 41-126 (174)
93 3glv_A Lipopolysaccharide core 25.0 66 0.0022 24.6 3.8 39 85-129 3-41 (143)
94 1coz_A Protein (glycerol-3-pho 24.8 64 0.0022 23.8 3.6 37 86-128 3-39 (129)
95 1zuw_A Glutamate racemase 1; ( 24.6 2.1E+02 0.0071 24.3 7.3 52 107-158 16-68 (272)
96 2b7l_A Glycerol-3-phosphate cy 23.9 74 0.0025 23.6 3.8 37 86-128 3-39 (132)
97 1vlh_A Phosphopantetheine aden 22.8 1.2E+02 0.0043 23.8 5.2 51 84-142 12-62 (173)
98 2dk5_A DNA-directed RNA polyme 22.6 82 0.0028 22.6 3.6 33 58-96 57-89 (91)
99 2ejc_A Pantoate--beta-alanine 22.4 56 0.0019 28.6 3.2 26 84-112 21-46 (280)
100 2jfq_A Glutamate racemase; cel 22.1 2E+02 0.0067 24.7 6.7 64 83-158 22-86 (286)
No 1
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0
Probab=100.00 E-value=2.3e-69 Score=507.65 Aligned_cols=228 Identities=56% Similarity=1.060 Sum_probs=202.9
Q ss_pred ccccCCccC--CCcccHHHHHHHhCCCCCCHHHHHHHHHhcCCChhHHHhhccccccCChhHHHHHHHcCCceEEEeccC
Q 025688 16 VVSPWEVSS--SGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRG 93 (249)
Q Consensus 16 ~v~pw~v~~--~~~~dy~kl~~~fg~~~i~~~~~~r~~~~~~~~~~~l~~Rgi~~~~~d~~~ll~~~e~~k~~~iYtG~d 93 (249)
-||||+|++ ...|||+|||++|||++||+++++|||++||+++|+|++||+|++|||++++++++++|+++++||||+
T Consensus 3 ~~~pw~~~~~~~~~~dy~kl~~~fg~~~~~~~~~~~~~~~~~~~~~~l~~RG~i~~~~d~~~l~~~l~~g~~~~vy~G~~ 82 (393)
T 3hv0_A 3 GSMPWEVKADNAYGIDYNKLIDKFGCKLITKDMIERMERLTGQKAHHFFRRNIFLSHRDFEKILDVYEKGELFYLYTGRG 82 (393)
T ss_dssp -----------------CCHHHHTTCEECCHHHHHHHHHHHSSCCCHHHHTTSEEEEESHHHHHHHHHTTCCCEEEEEEC
T ss_pred CCCcccccCCccccccHHHHHHHhCCCcCCHHHHHHHHHHhCCChHHHHhCCCccccCCHHHHHHHHhcCCCeEEEeCCC
Confidence 489999987 347999999999999999999999999999999999999999999999999999999888999999999
Q ss_pred CCCCCccchhhHHHHhHHHHHHcCCCcEEEEecChhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCCCCceEEEEcCcCCC
Q 025688 94 PSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWK-NLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVG 172 (249)
Q Consensus 94 PSg~sLHlGHlv~~~~l~~lQ~~g~~~v~i~IaD~~k~~~r-~l~~e~i~~~~~eni~~iiA~G~dp~kt~i~~ns~~~~ 172 (249)
|||++|||||++++++++|||++||++++|+|||+||+++| .++.|++++++++|+++|+|+|+||++++||+||+|.+
T Consensus 83 PTa~~lHlGh~v~~~~~~~lQ~~~~~~v~i~I~D~~~~~~r~~~~~e~i~~~~~~~~~~~lA~GlDp~kt~i~~ns~~~~ 162 (393)
T 3hv0_A 83 PSSESLHVGHLVPFLFTKYLQDTFKVPLVIQLTDDEKFIFKSNLTLEETHNYAYENMKDIIACGFDPELTFIFTNLEYIA 162 (393)
T ss_dssp CSSSSCBSTTHHHHHHHHHHHHHHCCCEEEEECHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTCCCTTTEEEEEHHHHHH
T ss_pred CCCCCccHHHHHHHHHHHHHHHhcCCCeEeeccChHHHhhccCCCHHHHHHHHHHHHHHHHHcCCCCcceEEEECCHHHH
Confidence 99889999999999999999999889999999999997666 59999999999999999999999999999999999986
Q ss_pred cccHHHHHHHhccCCHHHHHHhhCCCCCCceeeeechHHhhhccCCcCCCcccCCCCCCCCcccccCCCCCC
Q 025688 173 GAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQVGS 244 (249)
Q Consensus 173 ~~~~~~~l~l~k~~tv~~m~~~~gf~~~~~ig~~~YP~lQaaDil~~~fp~~~~~~~~~~~lVPvg~DQdp~ 244 (249)
.+|..+++++|++|+|+|++++||++++|+|+|+||+|||||||..|||+++..+.+.+|+||||+||+||
T Consensus 163 -~~~~~~~~l~r~~t~~~~~~~~~~~~~~s~g~f~YPlLQaaDil~~~~p~l~~~~~di~~lvp~G~DQ~~~ 233 (393)
T 3hv0_A 163 -ELYPDILRIEKKISCSQIKSIFGFKDSCNVGKFAFPAVQAAPAFSSSFPHIFGGRTDIHCLVPHAIDQDPY 233 (393)
T ss_dssp -HHHHHHHHHHHHSBHHHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGCHHHHTTCSCCCEEEEEEGGGHHH
T ss_pred -HHHHHHHHHHccCCHHHHHHhhCCCCCCchhhHhHHHHHHHHHHhhhhHHHhcccCCCceecccccchHHH
Confidence 56888999999999999999999998999999999999999999999999986665678999999999954
No 2
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi}
Probab=100.00 E-value=3.7e-68 Score=500.97 Aligned_cols=231 Identities=46% Similarity=0.895 Sum_probs=205.1
Q ss_pred hcccCcccccCCccCC------CcccHHHHHHHhCCCCCCHHHHHHHHHhcCCChhHHHhhccccccCChhHHHHHHHcC
Q 025688 10 EEEREQVVSPWEVSSS------GKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKG 83 (249)
Q Consensus 10 ~~~~~~~v~pw~v~~~------~~~dy~kl~~~fg~~~i~~~~~~r~~~~~~~~~~~l~~Rgi~~~~~d~~~ll~~~e~~ 83 (249)
.+++++.||||+|++. ..|||+|||++|||++||+++++|||++||+++|+|+|||+|++|||+++++++++++
T Consensus 20 ~~~~~~~v~pw~v~~~~~~~~~~~~dy~kl~~~fg~~~~~~~~~~~~~~~~~~~~h~~~~RG~i~~~~d~~~ll~~~~~~ 99 (406)
T 3tze_A 20 GSMAEQRITPWDVEVVSTDEVPVAIDYDKIINQFGCEKFNQALADRLEKLSGKPAHYFFRRGIVFAHRDFNLLLDEIANN 99 (406)
T ss_dssp --------------------CCSCCCHHHHHHTTTCEECCHHHHHHHHHHHSSCCCHHHHTTSEEEEESHHHHHHHHHTT
T ss_pred CccCCcccCccccccccccCccccccHHHHHHHhCCCcCCHHHHHHHHHHhCCCcHHHHhCCCeeccccHHHHHHHHhcC
Confidence 4667999999999862 3699999999999999999999999999999999999999999999999999999989
Q ss_pred CceEEEeccCCCCCCccchhhHHHHhHHHHHHcCCCcEEEEecChhhhhccCCCHHHHHHHHHHHHHHHHHcCCCCCceE
Q 025688 84 EKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTF 163 (249)
Q Consensus 84 k~~~iYtG~dPSg~sLHlGHlv~~~~l~~lQ~~g~~~v~i~IaD~~k~~~r~l~~e~i~~~~~eni~~iiA~G~dp~kt~ 163 (249)
+++++|+||+|||++|||||++++++++|||++++++++|+|||+||++.+++++|++++++++++++|+|||+||++++
T Consensus 100 ~p~~vy~G~~PTg~~lHLGh~v~~~~~~~lQ~~~g~~~~i~IaD~~a~l~~~~~~e~i~~~~~~~~~~~lA~GlDp~k~~ 179 (406)
T 3tze_A 100 RPFYLYTGRGPSSKTMHIGHTIPFLLCKYMQDAFKIRLVIQITDDEKFLWKSMRLEDAMAYGRENIKDIVTLGFDPKLTY 179 (406)
T ss_dssp CCEEEEEEECCCSSCCBGGGHHHHHHHHHHHHHHTCCEEEEECHHHHHHHSSCCHHHHHHHHHHHHHHHHTTTCCGGGEE
T ss_pred CCeEEEEeeCCCCCcccHHHHHHHHHHHHHHHhcCCcEEEEeeChHHHcCCCCCHHHHHHHHHHHHHHHHHcCCCccceE
Confidence 99999999999998999999999999999999977999999999999876679999999999999999999999999999
Q ss_pred EEEcCcCCCcccHHHHHHHhccCCHHHHHHhhCCCCCCceeeeechHHhhhccCCcCCCcccCCCCCCCCcccccCCCCC
Q 025688 164 IFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQVG 243 (249)
Q Consensus 164 i~~ns~~~~~~~~~~~l~l~k~~tv~~m~~~~gf~~~~~ig~~~YP~lQaaDil~~~fp~~~~~~~~~~~lVPvg~DQdp 243 (249)
||+||+|.+ .++..+.+++|++|++++++++||+++.|+|+|+||+|||||+++++||+++. ..+|+||||+||+|
T Consensus 180 i~~qs~~~~-~~~~~~~~L~r~~t~~~~~~~~g~~~~~s~g~f~YPlLQaaD~~~~~~p~il~---~~a~lvpvG~DQ~~ 255 (406)
T 3tze_A 180 IFSNVEASH-HFEENILKISKTINLNEAIKVFGFDMSSNIGQVGFPAKEIAPCFSSSFRFIGK---GAMCLVPAAVDQDP 255 (406)
T ss_dssp EEEHHHHGG-GGHHHHHHHHHTCBHHHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGSTTSCT---TCEEEEEEEGGGHH
T ss_pred EEeccHhHH-HHHHHHHHHHhhCCHHHHHHhhCCCCCCcchhhhhHHHhhhhhhccchHHhcc---CCCeEEeeccchHH
Confidence 999999986 88999999999999999999999988999999999999999999999999984 26999999999995
Q ss_pred C
Q 025688 244 S 244 (249)
Q Consensus 244 ~ 244 (249)
|
T Consensus 256 ~ 256 (406)
T 3tze_A 256 F 256 (406)
T ss_dssp H
T ss_pred H
Confidence 4
No 3
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0
Probab=100.00 E-value=2.8e-67 Score=493.78 Aligned_cols=229 Identities=55% Similarity=1.039 Sum_probs=204.6
Q ss_pred cCcccccCCccCCCcccHHHHHHHhCCCCCCHHHHHHHHHhcCCChhHHHhhccccccCChhHHHHHHHcCCceEEEecc
Q 025688 13 REQVVSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGR 92 (249)
Q Consensus 13 ~~~~v~pw~v~~~~~~dy~kl~~~fg~~~i~~~~~~r~~~~~~~~~~~l~~Rgi~~~~~d~~~ll~~~e~~k~~~iYtG~ 92 (249)
-+.+||||+|++ .|||+|||++|||++||+++++|||++||+++|+|++||++++|||++.+++++++|+++++||||
T Consensus 8 ~~~~~~~~~~~~--~~dy~~l~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~RG~~~~~~d~~~~l~~~~~~~~~~vy~G~ 85 (395)
T 3i05_A 8 HEAVVTPWSVEG--DVNYDKLIKDFGSHAIDEALLERIERVLGKKPHHFLRRGIFFSHRDLNLLLDVYESGQPFYLYTGR 85 (395)
T ss_dssp ----------------CHHHHHHHTTCEECCHHHHHHHHHHHTSCCCHHHHTTSEEEEESHHHHHHHHHTTCCEEEEEEE
T ss_pred ccceeccccccC--cccHHHHHHHhCCCcCCHHHHHHHHHhhCcchHHHHhcCCccccccHHHHHHHHhcCCCeEEEEee
Confidence 366899999999 999999999999999999999999999999999999999999999999999999989999999999
Q ss_pred CCCCCCccchhhHHHHhHHHHHHcCCCcEEEEecChhhhhccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEEcCcCCC
Q 025688 93 GPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVG 172 (249)
Q Consensus 93 dPSg~sLHlGHlv~~~~l~~lQ~~g~~~v~i~IaD~~k~~~r~l~~e~i~~~~~eni~~iiA~G~dp~kt~i~~ns~~~~ 172 (249)
+|||++|||||++++++++|||++|+++++|+|||+++++++++++|++++++++|+++|+|||+||++++||+||+|.+
T Consensus 86 ~PTg~~lHLGh~v~~~~~~~lQ~~~~~~v~i~I~D~~~~l~~~~~~e~i~~~~~~~~~~~lA~GlDp~kt~i~~ns~~~~ 165 (395)
T 3i05_A 86 GPSSESMHMGHLIPFMFTKWLQDSFRVPLVIQMTDDEKFYFRNIPMEQVEAMTTENIKDIIAMGFDPELTFIFRDFDYMG 165 (395)
T ss_dssp CCCSSCCBGGGSHHHHHHHHHHHHHTCCEEEEECHHHHHHHSCCCHHHHHHHHHHHHHHHHTTTCCTTSEEEEEHHHHTT
T ss_pred cCCCccchHHHHHHHHHHHHHHHhcCCcEEEEEcchHHHhcCCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEEcCHHHH
Confidence 99999999999999999999999988999999999998776679999999999999999999999999999999999987
Q ss_pred cccHHHHHHHhccCCHHHHHHhhCCCCCCceeeeechHHhhhccCCcCCCcccCCC-CCCCCcccccCCCCCC
Q 025688 173 GAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGK-DHLRCLIPCAIDQVGS 244 (249)
Q Consensus 173 ~~~~~~~l~l~k~~tv~~m~~~~gf~~~~~ig~~~YP~lQaaDil~~~fp~~~~~~-~~~~~lVPvg~DQdp~ 244 (249)
.+|..+.++++++|+++|++++||++++|+|+|+||+|||||+|+++||+++..+ ++.+|+||||+||+||
T Consensus 166 -~~~~~v~~l~r~~t~~~~~~~~~~~~~~s~g~f~YPlLQaaD~~~~~~~DIll~~~~~~~~lvp~G~DQ~~~ 237 (395)
T 3i05_A 166 -CMYRTVAKIERAFTASQVRGCFGFAMEDNCGRWMFPAIQAAPSFSAAFPHIFPPSMGNVFCLIPQAIDQDPY 237 (395)
T ss_dssp -TSHHHHHHHHHHSBHHHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGCTTTSCGGGCCCEEEEEEEGGGHHH
T ss_pred -HHHHHHHHHHhhCCHHHHHHhhCCCCCCchHHHHHHHHHHHhhhcccchhhhcccccCCceEEEeccchHHH
Confidence 7899999999999999999999999899999999999999999999999987543 3469999999999943
No 4
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii}
Probab=100.00 E-value=5.2e-65 Score=477.87 Aligned_cols=218 Identities=45% Similarity=0.837 Sum_probs=205.7
Q ss_pred ccCcccccCCccCCCcccHHHHHHHhCCCCCCHHHHHHHHHhcCCChhHHHhhccccccCChhHHHHHHHcCCceEEEec
Q 025688 12 EREQVVSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTG 91 (249)
Q Consensus 12 ~~~~~v~pw~v~~~~~~dy~kl~~~fg~~~i~~~~~~r~~~~~~~~~~~l~~Rgi~~~~~d~~~ll~~~e~~k~~~iYtG 91 (249)
.+++.||||+|++ .|||+|||++|||++||+++++|||++||+++|+|++||+|++|||++.+++++++|+++++|+|
T Consensus 2 ~~~~~v~pw~v~~--~~dy~kl~~~fg~~~~~~~~~~~~~~~~~~~~h~~~~Rg~i~~~~d~~~l~~~~~~~~p~~i~sG 79 (392)
T 3jxe_A 2 VEEFKVTPWEVEG--VVDYDKLIKHFGTSPLTEDLLEKTAELTKSELPIFFRRKFFFSHRDYDLILKDYEEGRGFFLYTG 79 (392)
T ss_dssp CCCCEECSSCEES--CCCHHHHHHHTTCEECCHHHHHHHHHHTTSCCCHHHHTTSEEEEESHHHHHHHHHTTCCCEEEEE
T ss_pred CCCCeeCCccccC--cccHHHHHHHhCCCcCCHHHHHHHHHHhCCCcHHHHhCcCcccccCHHHHHHHHhcCCCeEEEec
Confidence 3689999999999 89999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCccchhhHHHHhHHHHHHcCCCcEEEEecChhhhhccC-CCHHHHHHHHHHHHHHHHHcCCCCCceEEEEcCcC
Q 025688 92 RGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKN-LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDY 170 (249)
Q Consensus 92 ~dPSg~sLHlGHlv~~~~l~~lQ~~g~~~v~i~IaD~~k~~~r~-l~~e~i~~~~~eni~~iiA~G~dp~kt~i~~ns~~ 170 (249)
++||| +|||||++++++++|||+..+++++++|||+|+++.++ ++++++++++++|+++|+|||+||+|++||+||+|
T Consensus 80 ~~PTG-~lHLGh~v~~~~~~~lQ~~~g~~~~i~IaD~ha~~~~~~~~~e~i~~~~~~~~~~~lA~GlDp~kt~i~~qS~~ 158 (392)
T 3jxe_A 80 RGPSG-PMHIGHIIPFFATKWLQEKFGVNLYIQITDDEKFLFKENLTFDDTKRWAYDNILDIIAVGFDPDKTFIFQNSEF 158 (392)
T ss_dssp ECCSS-CCBHHHHHHHHHHHHHHHHHCCEEEEEECHHHHHHHCSSCCHHHHHHHHHHHHHHHHTTCCCTTSEEEEETTTS
T ss_pred cCCCC-chhHHHHHHHHHHHHHHHhcCCceEEEecchHHhhcCCCCCHHHHHHHHHHHHHHHHHhCcCccceEEEECchh
Confidence 99998 99999999999999999943378999999999988765 89999999999999999999999999999999999
Q ss_pred CCcccHHHHHHHhccCCHHHHHHhhCCCCCCceeeeechHHhhhccCCcCCCcccCCCCCCCCcccccCCCCCC
Q 025688 171 VGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQVGS 244 (249)
Q Consensus 171 ~~~~~~~~~l~l~k~~tv~~m~~~~gf~~~~~ig~~~YP~lQaaDil~~~fp~~~~~~~~~~~lVPvg~DQdp~ 244 (249)
.. ++++++++++++|+++|+++++|+++.|+|+|+||+|||||||+ + +++|+||||+||+||
T Consensus 159 ~~--~~~~~~~l~~~~t~~~~~~~~~~~~~~~~g~f~YP~LQaaDil~--~--------~~a~~vpvG~DQ~~h 220 (392)
T 3jxe_A 159 TK--IYEMAIPIAKKINFSMAKAVFGFTEQSKIGMIFFPAIQIAPTFF--E--------RKRCLIPAAIDQDPY 220 (392)
T ss_dssp TH--HHHHHHHHHHHSBHHHHHHHHCCCTTSBHHHHHHHHHHHGGGGS--S--------SSCEEEEEEGGGHHH
T ss_pred HH--HHHHHHHHHhhCCHHHHhhhhccCCCCchHHHHHHHHHHhhHHh--h--------cCCceeecccchHHH
Confidence 74 99999999999999999999999999999999999999999997 2 158999999999953
No 5
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica}
Probab=100.00 E-value=8.8e-65 Score=475.48 Aligned_cols=226 Identities=31% Similarity=0.640 Sum_probs=212.9
Q ss_pred cccccCCccCCCcccHHHHHHHhCCCCCCHHHHHHHHHhcCCChhHHHhhccccccCChhHHHHHHHcCCceEEEeccCC
Q 025688 15 QVVSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGP 94 (249)
Q Consensus 15 ~~v~pw~v~~~~~~dy~kl~~~fg~~~i~~~~~~r~~~~~~~~~~~l~~Rgi~~~~~d~~~ll~~~e~~k~~~iYtG~dP 94 (249)
.-++||.......|||+|||++|||++||+++++|||++||+++|+|+|||+|++|||++.+++++++++++++|+||+|
T Consensus 12 ~~~~~~~~~~~~~~dy~kl~~~fg~~~~~~~~~~~~~~~~~~~~h~~l~RG~i~~~~d~~~ll~~~~~~~~~~vysG~~P 91 (386)
T 3hzr_A 12 TPSQLLQSFTTRTTDYNQLINSVGINAITPQQIQRIEKLSGKAPHHYLSRGVFLAEKSLDKFLDDVEAKKPTFIFIQKYP 91 (386)
T ss_dssp -CCCSSCCCCSSSCCSHHHHHHHTCEECCHHHHHHHHHHHTSCCCHHHHTTSEEEESSHHHHHHHHHTTCCEEEEEEECC
T ss_pred CCcchhhhcCcccccHHHHHHHhCCCcCCHHHHHHHHHHhCCCchHHHHCcCccccccHHHHHHHHhcCCCeEEEeccCC
Confidence 35899987777789999999999999999999999999999999999999999999999999999998999999999999
Q ss_pred CCCCccchhhHHHHhHHHHHHcCCCcEEEEecChhhhhccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEEcCcCCCcc
Q 025688 95 SSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGA 174 (249)
Q Consensus 95 Sg~sLHlGHlv~~~~l~~lQ~~g~~~v~i~IaD~~k~~~r~l~~e~i~~~~~eni~~iiA~G~dp~kt~i~~ns~~~~~~ 174 (249)
||+ |||||++++++++|||++++++++|+|||++|+++|++++|++++++++++++|+|||+||+|++||+||+|.+ .
T Consensus 92 TG~-lHLGh~v~~~~~~~lQ~~~g~~v~i~I~D~~a~~~r~~~~e~i~~~~~~~~~~~lA~GlDp~kt~i~~qS~~~~-~ 169 (386)
T 3hzr_A 92 QKE-VALEEYITLEFARYLQDAFNIQVIIQILDDIKVLNREATINEASKMSNDLMKYILAFGFNEDKTFIYTDYQYFG-K 169 (386)
T ss_dssp CSS-CBGGGHHHHHHHHHHHHHHCCEEEEEECHHHHHHTTSCCHHHHHHHHHHHHHHHHHTCCCGGGEEEEEHHHHHH-H
T ss_pred CCC-ccHHHHHHHHHHHHHHHhcCCeEEEEeCchHHhhcCCCCHHHHHHHHHHHHHHHHHcCCCCcceEEEeccHHHH-H
Confidence 995 99999999999999999988999999999999887779999999999999999999999999999999999986 7
Q ss_pred cHHHHHHHhccCCHHHHHHhhCCCCCCceeeeechHHhhhccCCcCCCcccCCCCCCCCcccccCCCCCC
Q 025688 175 FYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQVGS 244 (249)
Q Consensus 175 ~~~~~l~l~k~~tv~~m~~~~gf~~~~~ig~~~YP~lQaaDil~~~fp~~~~~~~~~~~lVPvg~DQdp~ 244 (249)
++..+.+++|++|++++++++|+++++|+|+|+||+|||||+|+.+||++++.+ .+|+||||+||+||
T Consensus 170 ~~~~~~~l~r~~t~~~~~~~~~~~~~~~~g~f~YP~LQaaD~~~~~~pdil~~~--~a~~VpvG~DQ~~h 237 (386)
T 3hzr_A 170 MYRTISLVEKATAYNVVQPFFNFEYSDNIGKLASPSIMTASMFSQSYSHFFSSP--ARCLVLDSIKNVQF 237 (386)
T ss_dssp HHHHHHHHHHHCBHHHHTTTSCCCSSSBHHHHHHHHHHHHTTSGGGCTTTCSSC--CEEEEEEEGGGHHH
T ss_pred HHHHHHHHHhhccHHHHHHHhCCCCCCchhhHhhHHHHHHHHhhhcchHhhCCC--CccccccccchHHH
Confidence 888888999999999999999998899999999999999999999999998543 59999999999954
No 6
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A*
Probab=100.00 E-value=1.6e-64 Score=479.96 Aligned_cols=234 Identities=53% Similarity=0.994 Sum_probs=202.1
Q ss_pred hcccCcccccCCccCC-------CcccHHHHHHHhCCCCCCHHHHHHHHHhcCCChhHHHhhccccccCChhHHHHHHHc
Q 025688 10 EEEREQVVSPWEVSSS-------GKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEK 82 (249)
Q Consensus 10 ~~~~~~~v~pw~v~~~-------~~~dy~kl~~~fg~~~i~~~~~~r~~~~~~~~~~~l~~Rgi~~~~~d~~~ll~~~e~ 82 (249)
.+..++.||||+|++. .+|||+|||++|||++|++++++|||++||+++|+|++||+|++|||+++|++++++
T Consensus 20 ~~~~~~~v~pw~~~~~~~~~~~~~~~dy~kl~~~fg~~~~~~~~~~~~~~~~~~~~~~l~~RG~i~~~~d~~~l~~~l~~ 99 (432)
T 2ip1_A 20 TDVKEQVVTPWDVEGGVDEQGRAQNIDYDKLIKQFGTKPVNEETLKRFKQVTGREPHHFLRKGLFFSERDFTKILDLYEQ 99 (432)
T ss_dssp --------------------------CHHHHHHHHTCEECCHHHHHHHHHHHSSCCCHHHHTTSEEEEESHHHHHHHHHH
T ss_pred cccccceeCCCcccCccccccccccCCHHHHHHHhCCCcCCHHHHHHHHHhhCCccHHHHhCCCcccCCCHHHHHHHHhc
Confidence 4456799999999872 239999999999999999999999999999999999999999999999999999998
Q ss_pred CCceEEEeccCCCCCCccchhhHHHHhHHHHHH-cCCCcEEEEecChhhhhccC-CCHHHHHHHHHHHHHHHHHcCCCCC
Q 025688 83 GEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQD-AFKVPLVIQLTDDEKCMWKN-LSVEESQRLARENAKDIIACGFDVT 160 (249)
Q Consensus 83 ~k~~~iYtG~dPSg~sLHlGHlv~~~~l~~lQ~-~g~~~v~i~IaD~~k~~~r~-l~~e~i~~~~~eni~~iiA~G~dp~ 160 (249)
++++++||||+|||++|||||++++++++|||+ +| ++++++|||+|+++.++ ++.+++++++++|+++|+|||+||+
T Consensus 100 g~~~~vy~G~dPTag~LHLGh~v~~~~l~~lQ~~~g-~~~i~lI~D~ta~l~~~~~t~e~i~~~~~~~~~~~lA~GlDp~ 178 (432)
T 2ip1_A 100 GKPFFLYTGRGPSSDSMHLGHMIPFVFTKWLQEVFD-VPLVIELTDDEKFLFKHKLTINDVKNFARENAKDIIAVGFDPK 178 (432)
T ss_dssp TCCCEEEEEECCCSSCCBGGGHHHHHHHHHHHHHHT-CCEEEEECHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCGG
T ss_pred CCCeEEEEeecCCCCCccHHHHHHHHHHHHHHHHcC-CeEEEEEecccceeCCCCCCHHHHHHHHHHHHHHHHHhCCCCC
Confidence 899999999999977999999999999999999 66 67899999999977664 8999999999999999999999999
Q ss_pred ceEEEEcCcCCCcccHHHHHHHhccCCHHHHHHhhCCCCCCceeeeechHHhhhccCCcCCCcccCCCCCCCCcccccCC
Q 025688 161 KTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAID 240 (249)
Q Consensus 161 kt~i~~ns~~~~~~~~~~~l~l~k~~tv~~m~~~~gf~~~~~ig~~~YP~lQaaDil~~~fp~~~~~~~~~~~lVPvg~D 240 (249)
+++||+||+|++..++.+++++++++++++++++++++++.|+|+|+||+||||||+..++|+.|+++...+|+||||.|
T Consensus 179 k~~i~~nSd~~~~~~~~~~~~v~rm~~~~~~k~r~~~~~~~s~g~f~YPlLQAaDil~l~~d~~~~~~~~~~~lvp~G~D 258 (432)
T 2ip1_A 179 NTFIFSDLQYMGGAFYETVVRVSRQITGSTAKAVFGFNDSDCIGKFHFASIQIATAFPSSFPNVLGLPDKTPCLIPCAID 258 (432)
T ss_dssp GEEEEEHHHHCSHHHHHHHHHHHTSCCHHHHHHTTCCCTTSCHHHHHTHHHHHHTTSGGGCTTTTCCCTTCCEEEEEEGG
T ss_pred ceEEEeCchhhhhhHHHHHHHHHhhhcHHHHHHHhCCCCCCchhhhhHHHHHHHHHHHhccchhhcccCCCceEEEeccC
Confidence 99999999997667999999999999999999999988889999999999999999998888888644457999999999
Q ss_pred CCCC
Q 025688 241 QVGS 244 (249)
Q Consensus 241 Qdp~ 244 (249)
|+||
T Consensus 259 Q~~~ 262 (432)
T 2ip1_A 259 QDPY 262 (432)
T ss_dssp GHHH
T ss_pred cHHH
Confidence 9965
No 7
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A
Probab=100.00 E-value=2.9e-64 Score=483.27 Aligned_cols=233 Identities=62% Similarity=1.132 Sum_probs=214.4
Q ss_pred cccCcccccCCccCC--CcccHHHHHHHhCCCCCCHHHHHHHHHhcCCChhHHHhhccccccCChhHHHHHHHcCCceEE
Q 025688 11 EEREQVVSPWEVSSS--GKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKGEKFYL 88 (249)
Q Consensus 11 ~~~~~~v~pw~v~~~--~~~dy~kl~~~fg~~~i~~~~~~r~~~~~~~~~~~l~~Rgi~~~~~d~~~ll~~~e~~k~~~i 88 (249)
++.++.||||+|++. .+|||+|||++|||++||+++++||+++||+++|+|++||+|++|||++.+++++++++++++
T Consensus 79 ~~~~~~v~pw~~~~~~~~~~dy~kl~~~fg~~~~~~~~~~~~~~~~~~~~~~l~~RG~i~~~~d~~~l~~~l~~~~~~~v 158 (477)
T 1r6t_A 79 EAEEDFVDPWTVQTSSAKGIDYDKLIVRFGSSKIDKELINRIERATGQRPHHFLRRGIFFSHRDMNQVLDAYENKKPFYL 158 (477)
T ss_dssp ---CCEESSSCEECSCTTCCCHHHHHHHHTCEECCHHHHHHHHHHHCSCCCHHHHTTSEEEEESHHHHHHHHHTTCCEEE
T ss_pred ccccceeCCccccCCcccccCHHHHHHHhCCCCCCHHHHHHHHHHhCcccHHHHhCCCccccCCHHHHHHHHhcCCCcEE
Confidence 456899999999882 349999999999999999999999999999999999999999999999999999998899999
Q ss_pred EeccCCCCCCccchhhHHHHhHHHHHH-cCCCcEEEEecChhhhhccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEEc
Q 025688 89 YTGRGPSSEALHLGHLVPFMFTKYLQD-AFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSD 167 (249)
Q Consensus 89 YtG~dPSg~sLHlGHlv~~~~l~~lQ~-~g~~~v~i~IaD~~k~~~r~l~~e~i~~~~~eni~~iiA~G~dp~kt~i~~n 167 (249)
||||+|||++|||||++++++++|||+ +| ++++++|||+|+++.+.++.+++++++++++++|+|||+||++++||+|
T Consensus 159 y~G~dPTag~LHLGh~v~~~~~~~lQ~~~g-~~~iilI~D~~a~igd~lt~e~i~~n~~~~~~~~lA~GlDp~k~~i~~n 237 (477)
T 1r6t_A 159 YTGRGPSSEAMHVGHLIPFIFTKWLQDVFN-VPLVIQMTDDEKYLWKDLTLDQAYGDAVENAKDIIACGFDINKTFIFSD 237 (477)
T ss_dssp EEEECCCTTCCBGGGHHHHHHHHHHHHHHT-CCEEEEECHHHHHHHSSCCHHHHHHHHHHHHHHHHTTCCCTTSEEEEEH
T ss_pred EEcccCCCCCccHHHHHHHHHHHHHHHHhC-CcEEEEEecceeeecCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEec
Confidence 999999977999999999999999999 66 6899999999998765699999999999999999999999999999999
Q ss_pred CcCCC--cccHHHHHHHhccCCHHHHHHhhCCCCCCceeeeechHHhhhccCCcCCCcccCCCCCCCCcccccCCCCCC
Q 025688 168 FDYVG--GAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQVGS 244 (249)
Q Consensus 168 s~~~~--~~~~~~~l~l~k~~tv~~m~~~~gf~~~~~ig~~~YP~lQaaDil~~~fp~~~~~~~~~~~lVPvg~DQdp~ 244 (249)
|+|.+ ..++++++++++++|++++++++++++++|+|+|+||+||||||+..+++..||+++..+|+||||+||+||
T Consensus 238 sd~~~~l~~~~~~~~~l~r~~t~~~~k~r~~~~~~~s~gef~YPlLQAaDil~l~~d~~~g~~~~~~~~VpvG~DQ~~~ 316 (477)
T 1r6t_A 238 LDYMGMSSGFYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPY 316 (477)
T ss_dssp HHHGGGCTTHHHHHHHHHHTCBHHHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGCHHHHTTCCCCEEEEEEEGGGHHH
T ss_pred hhhhcccHHHHHHHHHHHhhccHHHHHHHhCCCCCCChhhhhhHHHHHHHHHHhccchhhccccCCceeEeccccHHHH
Confidence 99975 379999999999999999999999888899999999999999999877777786555689999999999954
No 8
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}
Probab=100.00 E-value=1.5e-63 Score=474.06 Aligned_cols=213 Identities=44% Similarity=0.814 Sum_probs=195.9
Q ss_pred CcccHHHHHHHhCCCCCCHHHHHHHHHhcCCChhHHHhhccccccCChhHHHHHHHcCCceEEEeccCCCCCCccchhhH
Q 025688 26 GKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLV 105 (249)
Q Consensus 26 ~~~dy~kl~~~fg~~~i~~~~~~r~~~~~~~~~~~l~~Rgi~~~~~d~~~ll~~~e~~k~~~iYtG~dPSg~sLHlGHlv 105 (249)
.+|||+|||++|||++|++++++|||++||+++|+|+|||+|++|||+++|++++++|+++++||||+|||++|||||++
T Consensus 32 ~~~dy~kl~~~fg~~~~~~~~~~~~~~~~~~~~h~~l~RG~i~~~~dl~~ll~~l~~g~p~~vytG~dPTagsLHLGH~v 111 (451)
T 3foc_A 32 AAVAYEDIITRFGAAPITDDLLKRFETVTGTKAHPMLRRGLFYAHRDFEEFLSYYEKGHPIYIYTGRGPSSGALHLGHLL 111 (451)
T ss_dssp HHHHHHHHHHTTTCBCCCHHHHHHHHHHHTCCCCHHHHTTSEEEEESHHHHHHHHHTTCCEEEEEEECCCSSCCBHHHHH
T ss_pred ccCcHHHHHHHhCCCcCCHHHHHHHHHHhCCChHHHHhCCCccccccHHHHHHHHhcCCCeEEEecCCCCCCCccHHHHH
Confidence 46999999999999999999999999999999999999999999999999999999889999999999998799999999
Q ss_pred HHHhHHHHHHcCCCcEEEEecChhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCCCCceEEEEcCcCCC-cccHHHHHHHh
Q 025688 106 PFMFTKYLQDAFKVPLVIQLTDDEKCMWK-NLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVG-GAFYKNMVKVA 183 (249)
Q Consensus 106 ~~~~l~~lQ~~g~~~v~i~IaD~~k~~~r-~l~~e~i~~~~~eni~~iiA~G~dp~kt~i~~ns~~~~-~~~~~~~l~l~ 183 (249)
++++++|||++|+++++|+|||||++++| .+++|++++++++|+++|+|||+||++++||+||+|++ ..++.++++++
T Consensus 112 ~~~~l~~lQ~~~g~~v~I~IgD~~a~~~r~~lt~E~I~~n~~~~~~~~lA~GlDpekt~i~~nSd~~~~~~~~~~l~~L~ 191 (451)
T 3foc_A 112 PFIFTKYLQDAFKCYVVIQITDDEKFLRNRSLSYAEVDSYTRENIKDIIACGFDPDKTFIFINSQYLSLKNRYRFSCLVD 191 (451)
T ss_dssp HHHHHHHHHHHHTCEEEEEECHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCGGGEEEEEHHHHTTSTTHHHHHHHHH
T ss_pred HHHHHHHHHHccCceEEEEeeCcHHhhcccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEeCchhhcchhHHHHHHHHH
Confidence 99999999999889999999999998776 59999999999999999999999999999999999986 67889989999
Q ss_pred ccCCHHHHHHhhCCCCCCceeeeechHHhhhccCCcCCCcccCCCCCCCCcccccCCCCCC
Q 025688 184 KCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQVGS 244 (249)
Q Consensus 184 k~~tv~~m~~~~gf~~~~~ig~~~YP~lQaaDil~~~fp~~~~~~~~~~~lVPvg~DQdp~ 244 (249)
+++|+|+|+++++|++++|+|+|+||+|||||||+.+ |+|+ +||+||||+|||||
T Consensus 192 r~~Tv~~m~~~~~f~~~is~gef~YPlLQAaDil~~~----~d~~--~~~~vp~~~d~~~~ 246 (451)
T 3foc_A 192 RMLPISQLRASFGFSNDANVGYAAFPPKQMLPVYSTY----FDGL--PFTRVPLPVGTGNE 246 (451)
T ss_dssp HTCCHHHHHHHHCCCSSSCHHHHTCHHHHHGGGSGGG----GTTS--GGGCCBCC------
T ss_pred hhCCHHHHHhhcccCCCCchHHHhhHHHHHHHHHHhh----cCCC--Cccccccccccccc
Confidence 9999999999999998999999999999999999643 3455 79999999999998
No 9
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A
Probab=100.00 E-value=3.6e-64 Score=477.62 Aligned_cols=234 Identities=62% Similarity=1.127 Sum_probs=214.3
Q ss_pred hcccCcccccCCccCC--CcccHHHHHHHhCCCCCCHHHHHHHHHhcCCChhHHHhhccccccCChhHHHHHHHcCCceE
Q 025688 10 EEEREQVVSPWEVSSS--GKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKGEKFY 87 (249)
Q Consensus 10 ~~~~~~~v~pw~v~~~--~~~dy~kl~~~fg~~~i~~~~~~r~~~~~~~~~~~l~~Rgi~~~~~d~~~ll~~~e~~k~~~ 87 (249)
+++.++.||||+|++. .+|||+|||++|||++||+++++||+++||+++|+|++||+|++|||+++++++++++++++
T Consensus 31 ~~~~~~~v~pw~v~~~~~~~~dy~kl~~~fg~~~~~~~~~~~~~~~~~~~~~~l~~RG~i~~~~d~~~l~~~l~~~~~~~ 110 (437)
T 1r6u_A 31 TEAEEDFVDPWTVQTSSAKGIDYDKLIVRFGSSKIDKELINRIERATGQRPHHFLRRGIFFSHRDMNQVLDAYENKKPFY 110 (437)
T ss_dssp ----CCEEETTEEECSCTTCSCTTTHHHHTTCEECCHHHHHHHHHHHTSCCCHHHHHTSEEEEESHHHHHHHHTTTCCEE
T ss_pred cccccceeCCCcccCCcccccCHHHHHHHhCCCCCCHHHHHHHHHHhCCCcHHHHhCCCccCCCCHHHHHHHHhcCCCcE
Confidence 3456899999999882 34999999999999999999999999999999999999999999999999999999889999
Q ss_pred EEeccCCCCCCccchhhHHHHhHHHHHH-cCCCcEEEEecChhhhhccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEE
Q 025688 88 LYTGRGPSSEALHLGHLVPFMFTKYLQD-AFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFS 166 (249)
Q Consensus 88 iYtG~dPSg~sLHlGHlv~~~~l~~lQ~-~g~~~v~i~IaD~~k~~~r~l~~e~i~~~~~eni~~iiA~G~dp~kt~i~~ 166 (249)
+||||+|||++|||||++++++++|||+ +| ++++++|||+|+++.+.++.+++++++++++++|+|+|+||++++||+
T Consensus 111 vy~G~dPTag~LHLGh~v~~~~~~~lQ~~~G-~~~iilIgD~ta~igd~lt~e~i~~n~~~~~~~~lA~GlDp~kt~i~~ 189 (437)
T 1r6u_A 111 LYTGRGPSSEAMHVGHLIPFIFTKWLQDVFN-VPLVIQMTDDEKYLWKDLTLDQAYGDAVENAKDIIACGFDINKTFIFS 189 (437)
T ss_dssp EEEEECCCSSCCBHHHHHHHHHHHHHHHHHT-CCEEEEECHHHHHHHSSCCHHHHHHHHHHHHHHHHTTTCCGGGEEEEE
T ss_pred EEEcccCCCCCccHHHHHHHHHHHHHHHHhC-CcEEEEEecceeeecCCCCHHHHHHHHHHHHHHHHHhCCCccceEEEe
Confidence 9999999977999999999999999999 66 689999999999887669999999999999999999999999999999
Q ss_pred cCcCCC--cccHHHHHHHhccCCHHHHHHhhCCCCCCceeeeechHHhhhccCCcCCCcccCCCCCCCCcccccCCCCCC
Q 025688 167 DFDYVG--GAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQVGS 244 (249)
Q Consensus 167 ns~~~~--~~~~~~~l~l~k~~tv~~m~~~~gf~~~~~ig~~~YP~lQaaDil~~~fp~~~~~~~~~~~lVPvg~DQdp~ 244 (249)
||+|.+ ..+++++++++++++++++++++++++++|+|+|+||+||||||+..+++..||+++..+|+||||+||+||
T Consensus 190 nSd~~~~l~~~~~l~~~v~rm~~~~~~k~r~~~~~~~s~gef~YPlLQAaDil~l~~d~~~g~~~~~~~lVpvG~DQ~~~ 269 (437)
T 1r6u_A 190 DLDYMGMSSGFYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPY 269 (437)
T ss_dssp HHHHGGGCTTHHHHHHHHHHTCBHHHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGCHHHHTTCCCCEEEEEEEGGGHHH
T ss_pred chhhhhhHHHHHHHHHHHHhhccHHHHHHHhCCCCCCchHhHHHHHHHHHHHHHhhcchhcccccCCceEEEeehhhHHH
Confidence 999975 269999999999999999999999888899999999999999999877777787655689999999999954
No 10
>3a04_A Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding, protein biosynthesis; 1.97A {Aeropyrum pernix} PDB: 3a05_A*
Probab=100.00 E-value=1.6e-63 Score=465.52 Aligned_cols=219 Identities=25% Similarity=0.389 Sum_probs=196.6
Q ss_pred cCcccccCCccCCCcccHHHHHHHhCCCCCCHHHHHHHHHhcCCChhHHHhhccccccCChhHHHHHHHcCCceEEEecc
Q 025688 13 REQVVSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGR 92 (249)
Q Consensus 13 ~~~~v~pw~v~~~~~~dy~kl~~~fg~~~i~~~~~~r~~~~~~~~~~~l~~Rgi~~~~~d~~~ll~~~e~~k~~~iYtG~ 92 (249)
.+|+||||+|++ .+||+|||++|||++||+.+ |++++||++||+|+||||||+|||++.|++++++|+|+++|||+
T Consensus 2 ~~~~v~pw~~~~--~~dy~kl~~~fg~~~i~~~l--~~~~~~~~~~h~~lrRgi~f~hRd~d~il~~~e~gk~~~v~sG~ 77 (372)
T 3a04_A 2 AAERLDPWGAVE--IKDYDRLLRTFGIRPFSEVL--PLLRKAGMEPSFLMRRGIIFGHRDFDKILEAKARGERVAVLTGF 77 (372)
T ss_dssp ----CCSSCSTT--TTTTHHHHHTTTCEEGGGGH--HHHHHTTCCCCHHHHTTSEEEEESHHHHHHHHHTTCCCEEEEEE
T ss_pred CCCeeCCCCCCC--CcCHHHHHHHhCCCCcchHH--HHHHhccCCcchhhccceeeeccCHHHHHHHHHcCCCCEEEeCc
Confidence 467899999999 99999999999999999865 78899999999999999999999999999999999999999999
Q ss_pred CCCCCCccchhhHHHHhHHHHHHcCCCcEEEEecChhhhhccC-CCHHHHHHHHHHHHHHHHHcCCCCCceEEEEcCcCC
Q 025688 93 GPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKN-LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYV 171 (249)
Q Consensus 93 dPSg~sLHlGHlv~~~~l~~lQ~~g~~~v~i~IaD~~k~~~r~-l~~e~i~~~~~eni~~iiA~G~dp~kt~i~~ns~~~ 171 (249)
+||| +|||||++++++++|+|+.+ .+++++|||+||++.+. .+.+.+++++++++++|+|||+||+|++||.||+|.
T Consensus 78 ~PTG-~lHLGhyv~~~~~~~lq~~~-~~~~~~IaD~ha~t~~~~~~~e~~r~~~~~~~~~~lA~GlDP~kt~if~qS~~~ 155 (372)
T 3a04_A 78 MPSG-KFHFGHKLTVDQLIYLQKNG-FKVFVAIADAEAFAVRRIGREEAVRIAVEEYIANMIALGLDPKDTEFYFQTNRG 155 (372)
T ss_dssp CCCS-CCBHHHHHHHHHHHHHHHTT-CEEEEEECHHHHHHTTCCCHHHHHHHHHHTTHHHHHHHTCCTTTCEEEEGGGSC
T ss_pred CCCc-HhHHHHHHHHHHHHHHHhCC-CeEEEEEecchhhccCCCCCHHHHHHHHHHHHHHHHHcCCChHHcchhhhccch
Confidence 9999 79999999999999999987 68999999999998776 455678889999999999999999999999999975
Q ss_pred CcccHHHHHHHhccCCHHHHHHhhCCCCCCceeeeechHHhhhccCCcCCCcccCCCCCCCCcccccCCCCCC
Q 025688 172 GGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQVGS 244 (249)
Q Consensus 172 ~~~~~~~~l~l~k~~tv~~m~~~~gf~~~~~ig~~~YP~lQaaDil~~~fp~~~~~~~~~~~lVPvg~DQdp~ 244 (249)
..++++++.+++.++++++.+.++ ..+.|.+.||++|||||++..++..+| . ++|+||||+||+||
T Consensus 156 -~~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~yP~lqAaDil~~~~d~~~g-y--~a~~VPVG~DQ~~h 221 (372)
T 3a04_A 156 -TPYFRLIQLFSGKVTAAEMEAIYG---ELTPAKMMASLTQAADILHVQLDEYGG-Y--RHVVVPVGADQDPH 221 (372)
T ss_dssp -HHHHHHHHHHTTSSCHHHHHHHHS---SCCHHHHHHHHHHHHHHHGGGSGGGTC-C--CCEEEEEEGGGHHH
T ss_pred -HHHHHHHHHHHhhhhHHHHhhhhh---ccCcccccCCcchhHHHhhhcCccccC-c--cceecccchhhHHH
Confidence 478899999999999999999988 467899999999999999855554433 3 69999999999954
No 11
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*
Probab=100.00 E-value=3e-42 Score=316.37 Aligned_cols=177 Identities=17% Similarity=0.228 Sum_probs=152.9
Q ss_pred hhHHHhhccccccCChhHHHHHHHcCCceEEEeccCCCCCCccchhhHHHHhHHHHHHcCCCcEEEEecChhhhhccC--
Q 025688 58 PHVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKN-- 135 (249)
Q Consensus 58 ~~~l~~Rgi~~~~~d~~~ll~~~e~~k~~~iYtG~dPSg~sLHlGHlv~~~~l~~lQ~~g~~~v~i~IaD~~k~~~r~-- 135 (249)
++.|++||++++|+|+++|+++++ ++++++||||+|||+|||||||++++.++|||++|| .++++|||+|+++..+
T Consensus 7 ~~~l~~Rg~~~~~~~~~~l~~~l~-~~~~~vy~G~~PTg~slHlGh~l~l~~~~~lQ~~g~-~~~~~i~D~~a~~~dp~g 84 (322)
T 2yxn_A 7 IKQLQERGLVAQVTDEEALAERLA-QGPIALVCGFDPTADSLHLGHLVPLLCLKRFQQAGH-KPVALVGGATGLIGDPSF 84 (322)
T ss_dssp HHHHHHTTCCSEESSHHHHHHHHH-HSCCEEEEEECCSSSSCBHHHHHHHHHHHHHHHTTC-EEEEEECTTGGGTCCCTT
T ss_pred HHHHHHCCceeeeCCHHHHHHHHc-CCCCEEEEeecCCCCcccHHHHHHHHHHHHHHHcCC-cEEEEEccceeeecCCCC
Confidence 578999999999999999999998 779999999999998899999999999999999984 6899999999987533
Q ss_pred -------CCHHHHHHHH---HHHHHHHHHcCCCCCceEEEEcCcCCCcccHHHHHH-HhccCCHHHHHHh------hCC-
Q 025688 136 -------LSVEESQRLA---RENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVK-VAKCVTYNKVVGI------FGF- 197 (249)
Q Consensus 136 -------l~~e~i~~~~---~eni~~iiA~G~dp~kt~i~~ns~~~~~~~~~~~l~-l~k~~tv~~m~~~------~gf- 197 (249)
++.+++++++ ++++++++|||+||+++.||+||+|+.+..+..+++ +++++++++|.++ +++
T Consensus 85 ~~~~R~~l~~e~i~~n~~~~~~~~~~~la~g~dp~k~~i~~qs~w~~~~~~l~~l~~~~~~~~v~~m~~~~~~k~r~~~~ 164 (322)
T 2yxn_A 85 KAAERKLNTEETVQEWVDKIRKQVAPFLDFDCGENSAIAANNYDWFGNMNVLTFLRDIGKHFSVNQMINKEAVKQRLNRE 164 (322)
T ss_dssp CSSCCCCCCHHHHHHHHHHHHHHHGGGSCSSSGGGCCEEEETHHHHTTCCHHHHHHHTGGGCCHHHHTTCHHHHHHHHCT
T ss_pred cccccccCCHHHHHHHHHHHHHHHHHHHHcCCCccceEEEecchhhccCcHHHHHHHHhccccHHHHhhhHHHHHHhccC
Confidence 4999999999 899999999999999999999999987667777786 9999999988764 343
Q ss_pred CCCCceeeeechHHhhhccCCcCCCcccCCCCCCCCcccc-cCCCCCC
Q 025688 198 TGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPC-AIDQVGS 244 (249)
Q Consensus 198 ~~~~~ig~~~YP~lQaaDil~~~fp~~~~~~~~~~~lVPv-g~DQdp~ 244 (249)
.+++|+|+|+||+||||||+. + +. +..|.||+ |.||.||
T Consensus 165 ~~~is~g~f~YP~LQaaDil~--l---~~---~~~~~v~~gG~DQ~~~ 204 (322)
T 2yxn_A 165 DQGISFTEFSYNLLQGYDFAC--L---NK---QYGVVLCIGGSDQWGN 204 (322)
T ss_dssp TCCCCHHHHTHHHHHHHHHHH--H---HH---HHCEEEEEECTTCHHH
T ss_pred CCCccchhhhHHHHHHHHHHH--H---hc---cCCceEEecCchhHHH
Confidence 245789999999999999996 2 21 12577777 9999965
No 12
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}
Probab=100.00 E-value=1.2e-40 Score=315.93 Aligned_cols=178 Identities=15% Similarity=0.189 Sum_probs=154.0
Q ss_pred hhHHHhhccccccCChhHHHHHHHcCCceEEEeccCCCCCCccchhhHHHHhHHHHHHcCCCcEEEEecChhhhhccC--
Q 025688 58 PHVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKN-- 135 (249)
Q Consensus 58 ~~~l~~Rgi~~~~~d~~~ll~~~e~~k~~~iYtG~dPSg~sLHlGHlv~~~~l~~lQ~~g~~~v~i~IaD~~k~~~r~-- 135 (249)
+..|++||++++|+++++|.++++ ++++++||||+|||++|||||+++++.++|||++|| .++++|||.|+++..+
T Consensus 6 ~~~L~~RG~~~~~~~~e~L~~~L~-~~~~~iy~G~dPTg~sLHLGhlv~l~~l~~lQ~~G~-~~i~lIgD~ta~igdpsk 83 (432)
T 2jan_A 6 LDELSWRGLIAQSTDLDTLAAEAQ-RGPMTVYAGFDPTAPSLHAGHLVPLLTLRRFQRAGH-RPIVLAGGATGMIGDPRD 83 (432)
T ss_dssp HHHHHHHTCCSEESCHHHHHHHHH-HSCCEEEEEECCSSSSCBGGGHHHHHHHHHHHHTTC-EEEEEECHHHHHHHCCCC
T ss_pred HHHHHHcCchhhcCCHHHHHHHHc-CCCCEEEEeeCCCCCCcCHHHHHHHHHHHHHHHCCC-cEEEEEcCcEEEccCCcc
Confidence 468899999999999999999997 688999999999998899999999999999999985 6788888888866543
Q ss_pred ------CCHHHHHHHHH---HHHHHHHHcCCCCCceEEEEcCcCCCcccHHHHHH-HhccCCHHHHHHhhCCC-----CC
Q 025688 136 ------LSVEESQRLAR---ENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVK-VAKCVTYNKVVGIFGFT-----GE 200 (249)
Q Consensus 136 ------l~~e~i~~~~~---eni~~iiA~G~dp~kt~i~~ns~~~~~~~~~~~l~-l~k~~tv~~m~~~~gf~-----~~ 200 (249)
++.|+++++++ +.++.++|+|+||+++.||+||+|+++..+..+++ +++++|+|+|+++.+|+ ++
T Consensus 84 ~~~R~~~~~e~i~~n~~~~~~~~~~~La~G~dp~k~~i~~nsdw~~~~~~l~~lr~l~~~~tv~~m~~~~~~k~r~~~~~ 163 (432)
T 2jan_A 84 VGERSLNEADTVAEWTERIRGQLERFVDFDDSPMGAIVENNLEWTGSLSAIEFLRDIGKHFSVNVMLARDTIRRRLAGEG 163 (432)
T ss_dssp TTTSGGGHHHHHHHHHHHHHHHHHHHSCCSSSTTCCEEEETHHHHSSCBHHHHHHHTGGGCBHHHHHHSHHHHHHTSTTC
T ss_pred cccccCCCHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEECchhcccCcHHHHHHHHhccCcHHHHhcchHHhhhhcCCC
Confidence 89999999986 44788999999999999999999987676777777 99999999999987763 46
Q ss_pred CceeeeechHHhhhccCCcCCCcccCCCCCCCCcccccCCCCCC
Q 025688 201 DHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQVGS 244 (249)
Q Consensus 201 ~~ig~~~YP~lQaaDil~~~fp~~~~~~~~~~~lVPvg~DQdp~ 244 (249)
+|+|+|+||+||||||+. + +.. ...+++|+|.||.||
T Consensus 164 is~~ef~YPlLQaaDil~--l---~~~--~~~~i~~gG~DQ~~n 200 (432)
T 2jan_A 164 ISYTEFSYLLLQANDYVE--L---HRR--HGCTLQIGGADQWGN 200 (432)
T ss_dssp CBHHHHHHHHHHHHHHHH--H---HHH--HCCCEEEECSTTHHH
T ss_pred cchHHHHHHHHHHHHHHH--H---hcc--CCCcEEeccHHHHHH
Confidence 799999999999999996 2 211 147889999999854
No 13
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis}
Probab=100.00 E-value=3.3e-40 Score=309.08 Aligned_cols=163 Identities=19% Similarity=0.193 Sum_probs=126.7
Q ss_pred ccccccCChhHHHHHHHcC-CceE----EEeccCCCCCCccchhhHHHHh-HHHHHHcCCCcEEEEecChhhhhccCCCH
Q 025688 65 GVFFAHRDLNDILDAYEKG-EKFY----LYTGRGPSSEALHLGHLVPFMF-TKYLQDAFKVPLVIQLTDDEKCMWKNLSV 138 (249)
Q Consensus 65 gi~~~~~d~~~ll~~~e~~-k~~~----iYtG~dPSg~sLHlGHlv~~~~-l~~lQ~~g~~~v~i~IaD~~k~~~r~l~~ 138 (249)
-|-.+|||++.+++++++| +|++ +|+|++||| .||||||+++++ +++||+ + ..++++|||+|+++. +.++
T Consensus 10 ~~~~~hrdld~il~~~e~g~~p~~m~~ri~sG~~PTG-~lHLGhyvGal~~~~~LQ~-~-~~~~~~IaD~hAlt~-~~~~ 85 (388)
T 3prh_A 10 PIPNPLLGLDSTENLYFQGIDPFTMKQTIFSGIQPSG-SVTLGNYIGAMKQFVELQH-D-YNSYFCIVDQHAITV-PQDR 85 (388)
T ss_dssp -------------------------CCEEEEEECCCS-CCBHHHHHHTHHHHHHTTT-T-SEEEEEECHHHHTTS-CCCH
T ss_pred CCCCccCCHHHHHHHHHcCCCCcccCCeEEEeeCCCC-cchHHHHHHHHHHHHHHHc-c-CcEEEEEecceeeec-CCCH
Confidence 3667999999999999998 8998 999999999 699999999986 889998 5 579999999999987 5899
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCceEEEEcCcCCCcccHHHHHHHhccCCHHHHHHhhCCC------CCCceeeeechHHh
Q 025688 139 EESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFT------GEDHIGKVSFPPVQ 212 (249)
Q Consensus 139 e~i~~~~~eni~~iiA~G~dp~kt~i~~ns~~~~~~~~~~~l~l~k~~tv~~m~~~~gf~------~~~~ig~~~YP~lQ 212 (249)
+++++++++|+++|+|||+||+|++||.||+|. .+.++.|.+++.++++++.+..+|+ ++.++|+|+||+||
T Consensus 86 ~~lr~~~~~~aa~~lA~GlDp~kt~if~qS~v~--~~~el~w~l~~~~~~~~L~R~~~fk~k~~~~~~~~~g~~~YPvLQ 163 (388)
T 3prh_A 86 LELRKNIRNLAALYLAVGLDPEKATLFIQSEVP--AHAQAGWMMQCVAYIGELERMTQFKDKSKGNEAVVSGLLTYPPLM 163 (388)
T ss_dssp HHHHHHHHHHHHHHHHTTCCTTTEEEEEGGGST--HHHHHHHHHHTTSCHHHHHTTC----------CCBHHHHSCHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCChhHeEEEeccccc--chHHHHHHHHhhccHHHHHhhhhHhHHhhccCCCcchhHhhHHHH
Confidence 999999999999999999999999999999996 4789999999999999999998886 56899999999999
Q ss_pred hhccCCcCCCcccCCCCCCCCcccccCCCCCC
Q 025688 213 AVPSFPSSFPHLFSGKDHLRCLIPCAIDQVGS 244 (249)
Q Consensus 213 aaDil~~~fp~~~~~~~~~~~lVPvg~DQdp~ 244 (249)
|||||+ | ++|+||||+||+||
T Consensus 164 AADIl~--~---------~ad~vPvG~DQ~~h 184 (388)
T 3prh_A 164 AADILL--Y---------GTDLVPPGEDQKQH 184 (388)
T ss_dssp HHHHHT--T---------TCCEECCCSSCHHH
T ss_pred HHHHHH--h---------CCCEEEechhHHHH
Confidence 999997 3 69999999999964
No 14
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii}
Probab=100.00 E-value=2.4e-40 Score=309.31 Aligned_cols=172 Identities=18% Similarity=0.173 Sum_probs=155.2
Q ss_pred HHHhhccccccCChhHHHHHHHcCCceEEEeccCCCCCCccchh-hHHHHhHHHHHHcCCCcEEEEecChhhhhccC--C
Q 025688 60 VFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGH-LVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKN--L 136 (249)
Q Consensus 60 ~l~~Rgi~~~~~d~~~ll~~~e~~k~~~iYtG~dPSg~sLHlGH-lv~~~~l~~lQ~~g~~~v~i~IaD~~k~~~r~--l 136 (249)
.|++||++..+.+.++|++++++++++++|+||+||| +||||| ++++++++|||++| ++++++|||+|+++.++ .
T Consensus 8 ~l~~r~~~~e~~~~~~l~~~l~~~~~~~vy~G~~PTg-~lHlG~yl~~l~~~~~lQ~~G-~~~~~~iaD~ha~~~~~~g~ 85 (375)
T 2cyc_A 8 NLVLKKPTEEVLTVENLRHLFEIGAPLQHYIGFEISG-YIHLGTGLMAGAKIADFQKAG-IKTRVFLADWHSWINDKLGG 85 (375)
T ss_dssp HHHHSTTEEEEETHHHHHHHHHHTCCCBEEEEECCCS-CCBHHHHHHHHHHHHHHHHTT-CBCEEEECHHHHHHTTGGGG
T ss_pred HHHhcCCceeecCHHHHHHHHhcCCCcEEEeCCCCCC-CcCchHHHHHHHHHHHHHHCC-CcEEEEecCcEEEcCCCCCC
Confidence 6899999999999999999999888999999999999 999999 88888999999998 58999999999988764 5
Q ss_pred CHHHHHHHH-HHHH----HHHHHcCCCCCceEEEEcCcCCCc-ccHHHHHHHhccCCHHHHHHhhCCC-----CCCceee
Q 025688 137 SVEESQRLA-RENA----KDIIACGFDVTKTFIFSDFDYVGG-AFYKNMVKVAKCVTYNKVVGIFGFT-----GEDHIGK 205 (249)
Q Consensus 137 ~~e~i~~~~-~eni----~~iiA~G~dp~kt~i~~ns~~~~~-~~~~~~l~l~k~~tv~~m~~~~gf~-----~~~~ig~ 205 (249)
+++++++++ ++++ +.|+|||+||+++.||+||+|..+ .+|.+++.+++++|+++|+++..++ +++++|+
T Consensus 86 ~~e~i~~~~~~~~~~~~~~~~la~G~dp~k~~i~~qS~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~k~r~~~~~i~~g~ 165 (375)
T 2cyc_A 86 DLEVIQEVALKYFKVGMEKSIEVMGGDPKKVEFVLASEILEKGDYWQTVIDISKNVTLSRVMRSITIMGRQMGEAIDFAK 165 (375)
T ss_dssp CHHHHHHHHHHTHHHHHHHHHHHTTCCGGGSEEEETHHHHTBHHHHHHHHHHHTTSBHHHHHHTGGGGTCCCCTTCBTHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhCCCccceEEEEcchhhhhhHHHHHHHHHhceeEHHHHhccchhhhhccCCCCChHH
Confidence 999999999 8888 889999999999999999999765 3778888899999999999987543 2478999
Q ss_pred eechHHhhhccCCcCCCcccCCCCCCCCcccccCCCCCC
Q 025688 206 VSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQVGS 244 (249)
Q Consensus 206 ~~YP~lQaaDil~~~fp~~~~~~~~~~~lVPvg~DQdp~ 244 (249)
|+||+||||||+. | .+++||||.||.||
T Consensus 166 f~YP~LQaaDil~--~---------~~~~vp~G~DQ~~~ 193 (375)
T 2cyc_A 166 LIYPMMQVADIFY--Q---------GVTIAHAGMDQRKA 193 (375)
T ss_dssp HHHHHHHHHHHHH--T---------TCSEEEEEGGGHHH
T ss_pred HHHHHHHHHHHHH--h---------CCCeecccchHHHH
Confidence 9999999999997 3 68999999999965
No 15
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Probab=100.00 E-value=6.1e-40 Score=310.21 Aligned_cols=178 Identities=17% Similarity=0.194 Sum_probs=151.1
Q ss_pred hhHHHhhccccccCChhHHHHHHHcCCceEEEeccCCCCCCccchhhHHHHhHHHHHHcCCCcEEEEecChhhhhc----
Q 025688 58 PHVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMW---- 133 (249)
Q Consensus 58 ~~~l~~Rgi~~~~~d~~~ll~~~e~~k~~~iYtG~dPSg~sLHlGHlv~~~~l~~lQ~~g~~~v~i~IaD~~k~~~---- 133 (249)
+..|.+||++++|+++++|.++++ ++++++||||||||+|||||||++++.++|||++|| .++++|||+|+.+.
T Consensus 4 ~~~L~~Rg~~~~~~~~~~L~~~L~-~~~~~iy~G~dPTg~sLHlGh~v~l~~l~~lQ~~G~-~~i~lIgd~ta~igdpsg 81 (419)
T 2ts1_A 4 LAELQWRGLVNQTTDEDGLRKLLN-EERVTLYCGFDPTADSLHIGHLATILTMRRFQQAGH-RPIALVGGATGLIGDPSG 81 (419)
T ss_dssp HHHHHHHTCCSEESCHHHHHHHHH-HSCCEEEEEECCSSSSCBGGGHHHHHHHHHHHHTTC-EEEEEECTTGGGTCCCTT
T ss_pred HHHHHHcCchhhcCCHHHHHHHHc-CCCCEEEEeeCCCCCCccHHHHHHHHHHHHHHHCCC-cEEEEEcCceeEecCCCC
Confidence 457899999999999999999997 678999999999998899999999999999999985 67788888887653
Q ss_pred ----cC-CCHHHHHHHHHHH---HHHHHHcCCCCCceEEEEcCcCCCcccHHHHHH-HhccCCHHHHHHhhCC----CCC
Q 025688 134 ----KN-LSVEESQRLAREN---AKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVK-VAKCVTYNKVVGIFGF----TGE 200 (249)
Q Consensus 134 ----r~-l~~e~i~~~~~en---i~~iiA~G~dp~kt~i~~ns~~~~~~~~~~~l~-l~k~~tv~~m~~~~gf----~~~ 200 (249)
|+ ++.|++++|+..+ +..++++|+||+++.|++||+|+.+..+..+++ +++++|+|+|+++.++ +++
T Consensus 82 k~~~R~~l~~e~i~~n~~~~~~q~~~~L~~g~dp~k~~i~~ns~w~~~~~~~~~l~~~~~~~tv~rm~~~~~~k~r~~~~ 161 (419)
T 2ts1_A 82 KKSERTLNAKETVEAWSARIKEQLGRFLDFEADGNPAKIKNNYDWIGPLDVITFLRDVGKHFSVNYMMAKESVQSRIETG 161 (419)
T ss_dssp CSSCCCCCCHHHHHHHHHHHHHHHTTSSCSSCSSSCCEEEETHHHHTTCCHHHHHHHTGGGCCHHHHHTSHHHHTTTTTC
T ss_pred ccccccCCCHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEchhhhhhchHHHHHHHHhcccCHHHHhccchhhhccCCC
Confidence 22 5999999888543 566778999999999999999987777777787 9999999999998765 356
Q ss_pred CceeeeechHHhhhccCCcCCCcccCCCCCCCCcccccCCCCCC
Q 025688 201 DHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQVGS 244 (249)
Q Consensus 201 ~~ig~~~YP~lQaaDil~~~fp~~~~~~~~~~~lVPvg~DQdp~ 244 (249)
+|+|+|+||+||||||+. + +.. ....++|+|.||.||
T Consensus 162 is~~ef~YPlLQaaDil~--l---~~~--~~~~i~~gG~DQ~~n 198 (419)
T 2ts1_A 162 ISFTEFSYMMLQAYDFLR--L---YET--EGCRLQIGGSDQWGN 198 (419)
T ss_dssp CCHHHHHHHHHHHHHHHH--H---HHH--HCEEEEEEEGGGHHH
T ss_pred cchHHHHHHHHHHHHHHH--H---hcc--CCCcEEeccHHHHHH
Confidence 899999999999999996 2 211 146789999999864
No 16
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix}
Probab=100.00 E-value=2.2e-39 Score=301.73 Aligned_cols=171 Identities=18% Similarity=0.182 Sum_probs=152.9
Q ss_pred HHHhhccccccCChhHHHHHHHcCCceEEEeccCCCCCCccchhhHHHHhHHHHHHcCCCcEEEEecChhhhhccC--CC
Q 025688 60 VFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKN--LS 137 (249)
Q Consensus 60 ~l~~Rgi~~~~~d~~~ll~~~e~~k~~~iYtG~dPSg~sLHlGHlv~~~~l~~lQ~~g~~~v~i~IaD~~k~~~r~--l~ 137 (249)
.|++|| +..+.+.++|.+++++|+++++|+||+||| +|||||++++++++|||++| ..++++|||+|+++.++ .+
T Consensus 11 ~l~~r~-~~e~~~~~~L~~~l~~~~~~~iy~G~~PTg-~lHlG~l~~l~~~~~lQ~~G-~~~~~~iaD~~a~~~~ps~~~ 87 (364)
T 2cya_A 11 NRIARN-TVEIVTEEELKGLLASGARIKGYIGYEPSG-VAHIGWLVWMYKVKDLVEAG-VDFSVLEATWHAYINDKLGGD 87 (364)
T ss_dssp HHHHTT-CSEEETHHHHHHHHHHCSCCEEEEEECCCS-SCBTHHHHHHHHHHHHHHTT-CEEEEEECHHHHHHTTGGGGC
T ss_pred HHHHcC-chhcCCHHHHHHHHhcCCCCEEEeccCCCC-CccHhHHHHHHHHHHHHHCC-CCEEEEEeCcchhhCCCCCCC
Confidence 679999 778889999999999889999999999999 89999999999999999998 57999999999988764 79
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCceEEEEcCcCCCc-ccHHHHHHHhccCCHHHHHHhhCCCC------CCceeeeechH
Q 025688 138 VEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGG-AFYKNMVKVAKCVTYNKVVGIFGFTG------EDHIGKVSFPP 210 (249)
Q Consensus 138 ~e~i~~~~~eni~~iiA~G~dp~kt~i~~ns~~~~~-~~~~~~l~l~k~~tv~~m~~~~gf~~------~~~ig~~~YP~ 210 (249)
++++++++++++++|+|||+||+++.||+||+|..+ .+|.+++++++++|+++|+++..+++ ++++|+|+||+
T Consensus 88 ~e~i~~~~~~~~~~~la~G~dp~k~~i~~qS~~~~~~~~~~~~~~l~~~~t~~~l~r~~~~k~r~~~~~~i~~g~~~YP~ 167 (364)
T 2cya_A 88 MDLIRAAARIVRRVMEAAGVPVERVRFVDAEELASDKDYWGLVIRVAKRASLARVRRALTIMGRRAEEAEVDASKLIYPL 167 (364)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCGGGCEEEEHHHHHTCHHHHHHHHHHHHTSCHHHHHTTC------CCGGGSCTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCccceEEEecchhhcchHHHHHHHHHHCcCcHHHHHcCchhhhhhcCCCCccchhhhhHH
Confidence 999999999999999999999999999999999754 57888888999999999999865432 36799999999
Q ss_pred HhhhccCCcCCCcccCCCCCCCCcccccCCCCCC
Q 025688 211 VQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQVGS 244 (249)
Q Consensus 211 lQaaDil~~~fp~~~~~~~~~~~lVPvg~DQdp~ 244 (249)
||||||+. + ..++||||.||.||
T Consensus 168 LQaaDil~------~-----~~~~v~~G~DQ~~~ 190 (364)
T 2cya_A 168 MQVSDIFY------M-----DLDIALGGMDQRKA 190 (364)
T ss_dssp HHHHHHHH------T-----TCSEEEEEGGGHHH
T ss_pred HHHhhHHh------c-----CCCEEeccchHHHH
Confidence 99999997 3 68999999999965
No 17
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=100.00 E-value=5e-39 Score=304.25 Aligned_cols=177 Identities=18% Similarity=0.258 Sum_probs=151.5
Q ss_pred hhHHHhhccccccCChhHHHHHHHcCCceEEEeccCCCCCCccchhhHHHHhHHHHHHcCCCcEEEEecChhhhhcc---
Q 025688 58 PHVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWK--- 134 (249)
Q Consensus 58 ~~~l~~Rgi~~~~~d~~~ll~~~e~~k~~~iYtG~dPSg~sLHlGHlv~~~~l~~lQ~~g~~~v~i~IaD~~k~~~r--- 134 (249)
+..|++||++++|++++++.++++ ++++++||||||||+|||||||++++.++|||++|| .++++|||+|+.+..
T Consensus 6 ~~~l~~Rg~~~~~~~~~~L~~~L~-~~~~~iy~G~dPTg~sLHlGh~v~l~~~~~lQ~~G~-~~~~lIgd~ta~igdp~g 83 (420)
T 1jil_A 6 IEDLKWRGLIYQQTDEQGIEDLLN-KEQVTLYCGADPTADSLHIGHLLPFLTLRRFQEHGH-RPIVLIGGGTGMIGDPSG 83 (420)
T ss_dssp HHHHHHTTCCCCBSCHHHHHHHHH-HSCCEEEEEECCSSSSCBHHHHHHHHHHHHHHHTTC-EEEEEECTTGGGTCCCTT
T ss_pred HHHHHHcCchhhcCCHHHHHHHHc-CCCCEEEEeeCCCCCCccHHHHHHHHHHHHHHHCCC-cEEEEEcCceeEecCCCc
Confidence 467899999999999999998887 678999999999998899999999999999999985 678888888876542
Q ss_pred -----C-CCHHHHHHHHHHHHHHHHHcCCCC---CceEEEEcCcCCCcccHHHHHH-HhccCCHHHHHHhhCC----CCC
Q 025688 135 -----N-LSVEESQRLARENAKDIIACGFDV---TKTFIFSDFDYVGGAFYKNMVK-VAKCVTYNKVVGIFGF----TGE 200 (249)
Q Consensus 135 -----~-l~~e~i~~~~~eni~~iiA~G~dp---~kt~i~~ns~~~~~~~~~~~l~-l~k~~tv~~m~~~~gf----~~~ 200 (249)
+ ++.|++++|+.++.+.++++ +|| +++.|++||+|+.+..+..+++ +++++|+|+|+++.++ +++
T Consensus 84 k~~~R~~l~~e~i~~n~~~~~~~~~~~-ld~~~~~k~~i~~ns~w~~~~~~l~~l~~~~~~~tv~~m~~~~~~k~r~~~~ 162 (420)
T 1jil_A 84 KSEERVLQTEEQVDKNIEGISKQMHNI-FEFGTDHGAVLVNNRDWLGQISLISFLRDYGKHVGVNYMLGKDSIQSRLEHG 162 (420)
T ss_dssp CSSCCCCCCHHHHHHHHHHHHHHHHHH-SCCSSSSSCEEEETHHHHTTCCHHHHHHHTGGGCCHHHHHTCGGGHHHHTTT
T ss_pred cccccccCCHHHHHHHHHHHHHHHHHH-hCCCCCCceEEEEchhhhhhccHHHHHHHHhccccHHHHhcchhhhhhccCC
Confidence 2 59999999998888888888 777 9999999999987666777777 9999999999999887 457
Q ss_pred CceeeeechHHhhhccCCcCCCcccCCCCCCCCcccccCCCCCC
Q 025688 201 DHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQVGS 244 (249)
Q Consensus 201 ~~ig~~~YP~lQaaDil~~~fp~~~~~~~~~~~lVPvg~DQdp~ 244 (249)
+|+|+|+||+||||||+. + +.. ...+++|+|.||.||
T Consensus 163 is~~ef~YplLQaaD~l~--l---~~~--~~~~i~~gG~DQ~~n 199 (420)
T 1jil_A 163 ISYTEFTYTILQAIDFGH--L---NRE--LNCKIQVGGSDQWGN 199 (420)
T ss_dssp CCHHHHHHHHHHHHHHHH--H---HHH--HCEEEEEEEGGGHHH
T ss_pred cchHHHHHHHHHHHHHHH--H---hcc--CCCcEEeccHHHHHH
Confidence 899999999999999996 2 211 146789999999864
No 18
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=100.00 E-value=6.3e-39 Score=304.38 Aligned_cols=170 Identities=19% Similarity=0.212 Sum_probs=138.0
Q ss_pred hhHHHhhccccccCChhHHHHHHHcCCceEEEeccCCCCCCccchhhHHHHhHHHHHHcCCCcEEEEecChhhhhccC--
Q 025688 58 PHVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKN-- 135 (249)
Q Consensus 58 ~~~l~~Rgi~~~~~d~~~ll~~~e~~k~~~iYtG~dPSg~sLHlGHlv~~~~l~~lQ~~g~~~v~i~IaD~~k~~~r~-- 135 (249)
.+.+++||++... +.+++.+.+++++++++|+||+|||++|||||++++++++|||++|| .++++|||+|+++.++
T Consensus 11 ~~~li~Rg~~e~~-~~~~L~~~L~~~~~~~vy~G~dPTg~sLHlGh~v~l~~l~~lQ~~G~-~~i~lIgD~ta~igdpsg 88 (432)
T 1h3f_A 11 ALALLKRGAEEIV-PEEELLAKLKEGRPLTVKLGADPTRPDLHLGHAVVLRKMRQFQELGH-KVVLIIGDFTGMIGDPSG 88 (432)
T ss_dssp HHHHHHTTCSEEE-THHHHHHHHHTCSCCEEEEEECTTCCSCBHHHHHHHHHHHHHHHTTC-EEEEEECCCC--------
T ss_pred HHHHHHcchHHhC-CHHHHHHHHhcCCCcEEEEcccCCCCCCchhhHHHHHHHHHHHHCCC-CEEEEEccceEEecCCCC
Confidence 3588999997665 56777777777899999999999998999999999999999999985 6899999999877532
Q ss_pred -------CCHHHHHHHHHHHHHHHHH---cCCC--CCceEEEEcCcCCCcccHHHHHHHhccCCHHHHHHhhCCC-----
Q 025688 136 -------LSVEESQRLARENAKDIIA---CGFD--VTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFT----- 198 (249)
Q Consensus 136 -------l~~e~i~~~~~eni~~iiA---~G~d--p~kt~i~~ns~~~~~~~~~~~l~l~k~~tv~~m~~~~gf~----- 198 (249)
++.|++++++ ++|++ +|+| |+++.||+||+|+++..+..++++++++|+++|+++.+|+
T Consensus 89 k~~~R~~l~~e~i~~n~----~~~~~ql~~~ld~~p~k~~i~~nSd~~~~~~~~~~l~l~~~~tv~~ml~~~~~k~r~~~ 164 (432)
T 1h3f_A 89 RSKTRPPLTLEETRENA----KTYVAQAGKILRQEPHLFELRYNSEWLEGLTFKEVVRLTSLMTVAQMLEREDFKKRYEA 164 (432)
T ss_dssp -------------HHHH----HHHHHHHTTTSCCCTTTEEEEETHHHHTTCBHHHHHHHHTTSBHHHHTTSHHHHHHHHT
T ss_pred cccccccCCHHHHHHHH----HHHHHHHHHHhcCCCCceEEEECCcccccCcHHHHHHHhCcCcHHHHHhhhhHHHHhhc
Confidence 5688888544 44444 8999 9999999999998888899999999999999999887763
Q ss_pred -CCCceeeeechHHhhhccCCcCCCcccCCCCCCCCcccccCCCCCC
Q 025688 199 -GEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQVGS 244 (249)
Q Consensus 199 -~~~~ig~~~YP~lQaaDil~~~fp~~~~~~~~~~~lVPvg~DQdp~ 244 (249)
+++|+|+|+||+||||||+. + .+++||+|.||.+|
T Consensus 165 ~~~is~~ef~YPlLQaaDil~------l-----~~~l~~gG~DQ~~n 200 (432)
T 1h3f_A 165 GIPISLHELLYPFAQAYDSVA------I-----RADVEMGGTDQRFN 200 (432)
T ss_dssp TCCCBGGGGTHHHHHHHHHHH------H-----TCSEEEEEGGGHHH
T ss_pred CCCCCccccchhhHHhhhhhh------c-----CccEEEechHHHHH
Confidence 56899999999999999997 3 58999999999854
No 19
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus}
Probab=100.00 E-value=7.4e-38 Score=286.98 Aligned_cols=171 Identities=22% Similarity=0.258 Sum_probs=153.5
Q ss_pred HHHhhccccccCChhHHHHHHHcCCceEEEeccCCCCCCccchhhHHHHhHHHHHHcCCCcEEEEecChhhhhccCCCHH
Q 025688 60 VFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVE 139 (249)
Q Consensus 60 ~l~~Rgi~~~~~d~~~ll~~~e~~k~~~iYtG~dPSg~sLHlGHlv~~~~l~~lQ~~g~~~v~i~IaD~~k~~~r~l~~e 139 (249)
.|++||+++.+++ ++|.+++++++++++|+||+||| +|||||+++++.++|||++| ..++++|||+|+++.+..+++
T Consensus 8 ~l~~rg~~e~~~~-~~l~~~l~~~~~~~vy~G~~PTg-~lHlG~l~~l~~~~~lq~~g-~~~~~~i~D~~a~~~d~~~~~ 84 (323)
T 2cyb_A 8 RLITRNAEEVVTE-EELRQLIETKEKPRAYVGYEPSG-EIHLGHMMTVQKLMDLQEAG-FEIIVLLADIHAYLNEKGTFE 84 (323)
T ss_dssp HHHHTTCSEEETH-HHHHHHHHSCSCCEEEEEECCCS-CCBHHHHHHHHHHHHHHHTT-CEEEEEECHHHHHHTTCCCHH
T ss_pred HHHHcCChhhcCH-HHHHHHHhCCCCCEEEECcCCCC-cchHHHHHHHHHHHHHHHCC-CcEEEEECCceeEcCCCCCHH
Confidence 6789999988874 78888898889999999999999 89999999999999999987 579999999999887656999
Q ss_pred HHHHHHHHHHHHHHHcCCCCCceEEEEcCcCCCc-ccHHHHHHHhccCCHHHHHHhh---CCC-CCCceeeeechHHhhh
Q 025688 140 ESQRLARENAKDIIACGFDVTKTFIFSDFDYVGG-AFYKNMVKVAKCVTYNKVVGIF---GFT-GEDHIGKVSFPPVQAV 214 (249)
Q Consensus 140 ~i~~~~~eni~~iiA~G~dp~kt~i~~ns~~~~~-~~~~~~l~l~k~~tv~~m~~~~---gf~-~~~~ig~~~YP~lQaa 214 (249)
++++++++++++++|+|+||+++.|++||+|... .++++++.+++++|+++|+++. ++. ++.++|+|+||++|||
T Consensus 85 ~i~~~~~~~~~~~~a~Gldp~k~~i~~qS~~~~~~~~~~~~~~l~~~~t~~~l~~~~~~~~~~~~~~~~g~~~YP~lqaa 164 (323)
T 2cyb_A 85 EIAEVADYNKKVFIALGLDESRAKFVLGSEYQLSRDYVLDVLKMARITTLNRARRSMDEVSRRKEDPMVSQMIYPLMQAL 164 (323)
T ss_dssp HHHHHHHHHHHHHHHTTCCTTTCEEEEGGGTTTSHHHHHHHHHHHHHSBHHHHHHHTTTTCSCSSSCBTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCccceEEEEcchhccchHHHHHHHHHhCccCHHHHhccchhhccccCCCCchhhhhHHHHHH
Confidence 9999999999999999999999999999999754 6888999999999999999976 332 3458999999999999
Q ss_pred ccCCcCCCcccCCCCCCCCcccccCCCCCC
Q 025688 215 PSFPSSFPHLFSGKDHLRCLIPCAIDQVGS 244 (249)
Q Consensus 215 Dil~~~fp~~~~~~~~~~~lVPvg~DQdp~ 244 (249)
|++. + ..++||+|.||.||
T Consensus 165 D~l~------~-----~~~~v~~G~DQ~~~ 183 (323)
T 2cyb_A 165 DIAH------L-----GVDLAVGGIDQRKI 183 (323)
T ss_dssp HHHH------T-----TCSEEEEEGGGHHH
T ss_pred HHHh------c-----CCCEEEechhhHHH
Confidence 9997 3 58999999999864
No 20
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A*
Probab=100.00 E-value=8.6e-39 Score=296.96 Aligned_cols=178 Identities=16% Similarity=0.156 Sum_probs=143.3
Q ss_pred hhHHHhhcccc--ccC-----ChhHHHHHHHcCCceEEEeccCCCCCCccchhhHHHHhHHHHHHcCCCcEEEEecChhh
Q 025688 58 PHVFLRRGVFF--AHR-----DLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEK 130 (249)
Q Consensus 58 ~~~l~~Rgi~~--~~~-----d~~~ll~~~e~~k~~~iYtG~dPSg~sLHlGHlv~~~~l~~lQ~~g~~~v~i~IaD~~k 130 (249)
++.|++||+++ .++ +++++++..++|+|+++||||+|||++|||||+++++.++|||++| ..++++|||+|+
T Consensus 12 ~~~l~~Rg~~~~~~~~~~~~~~L~~~L~~~~~g~~~~vy~G~~PTg~sLHLGhl~~l~~~~~lQ~~G-~~~~~lIaD~ha 90 (356)
T 2pid_A 12 LAAQKARGLFKDFFPETGTKIELPELFDRGTASFPQTIYCGFDPTADSLHVGHLLALLGLFHLQRAG-HNVIALVGGATA 90 (356)
T ss_dssp HHHHHHHTSCCEEECSSCTTSCGGGGC-------CCEEEEEECCSSSSCBHHHHHHHHHHHHHHHTT-CEEEEEECTTGG
T ss_pred HHHHHHcCChheeCCccccHHHHHHHHhcCccCCCCEEEEeecCCCCcccHHHHHHHHHHHHHHHCC-CcEEEEEcccee
Confidence 68899999994 444 4555655444456799999999999889999999999999999998 578999999998
Q ss_pred hhccC---------CCHHHHHHHHHHHHHHHHHcCCCCCc-----------eEEEEcCcCCCcccHHHHHH-HhccCCHH
Q 025688 131 CMWKN---------LSVEESQRLARENAKDIIACGFDVTK-----------TFIFSDFDYVGGAFYKNMVK-VAKCVTYN 189 (249)
Q Consensus 131 ~~~r~---------l~~e~i~~~~~eni~~iiA~G~dp~k-----------t~i~~ns~~~~~~~~~~~l~-l~k~~tv~ 189 (249)
++..+ ++.|+++++++++++.++|+ +||++ +.|++|++|+.+..+..+++ ++++++++
T Consensus 91 l~~dp~g~~~~R~~l~~e~i~~n~~~~~~~~~a~-lDp~~~~~qs~~~~~~~~i~~ns~w~~~~~~~~~l~~~~~~~~v~ 169 (356)
T 2pid_A 91 RLGDPSGRTKEREALETERVRANARALRLGLEAL-AANHQQLFTDGRSWGSFTVLDNSAWYQKQHLVDFLAAVGGHFRMG 169 (356)
T ss_dssp GTCCCTTCSSCCCCCCHHHHHHHHHHHHHHHHHH-HHHHHHHSCCSSCCCCEEEEETHHHHTTCBHHHHHHHHGGGSBHH
T ss_pred eecCCcccccccccCCHHHHHHHHHHHHHHHHHh-cChhhccccccCCCcceEEEechHhhhhccHHHHHHHHhcceeHH
Confidence 77432 58999999999999999999 88754 99999999987655555555 99999999
Q ss_pred HHHHhhCCC------CCCceeeeechHHhhhccCCcCCCcccCCCCCCCCcccccCCCCCC
Q 025688 190 KVVGIFGFT------GEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQVGS 244 (249)
Q Consensus 190 ~m~~~~gf~------~~~~ig~~~YP~lQaaDil~~~fp~~~~~~~~~~~lVPvg~DQdp~ 244 (249)
+|+++.+++ +++++|+|+||+||||||+. + +.. ...++||||.||.||
T Consensus 170 ~m~~~~~~k~r~~~~~~is~g~f~YPvLQAaDil~--l---~~~--~~~~i~p~G~DQ~~~ 223 (356)
T 2pid_A 170 TLLSRQSVQLRLKSPEGMSLAEFFYQVLQAYDFYY--L---FQR--YGCRVQLGGSDQLGN 223 (356)
T ss_dssp HHHHCHHHHHHHTSTTCCBHHHHHHHHHHHHHHHH--H---HHH--HCCCEEEEEGGGHHH
T ss_pred HHhcchHHHHhhccCCCCchHHHHHHHHHHHHHHH--H---hcc--CCCcEEeccHHHHHH
Confidence 999988763 36899999999999999996 2 211 147899999999964
No 21
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}
Probab=100.00 E-value=2.1e-38 Score=293.60 Aligned_cols=174 Identities=18% Similarity=0.227 Sum_probs=142.8
Q ss_pred HHHhhccccccCChhHHHHHHHcCCceEEEeccCCCCCCccchh-hHHHHhHHHHHHcCCCcEEEEecChhhhhccC--C
Q 025688 60 VFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGH-LVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKN--L 136 (249)
Q Consensus 60 ~l~~Rgi~~~~~d~~~ll~~~e~~k~~~iYtG~dPSg~sLHlGH-lv~~~~l~~lQ~~g~~~v~i~IaD~~k~~~r~--l 136 (249)
.+++|| ...+.+.++|.+++++++++++||||+||| +||||| +++++.++|||++| ..++++|||+|+++.++ +
T Consensus 16 ~l~~r~-~~e~~~~~~L~~~L~~~~~~~vy~G~~PTg-~lHlGhyl~~l~~~~~lQ~~G-~~~~~~i~D~~a~~~~~~~~ 92 (348)
T 2j5b_A 16 TQLLSI-AEECETLDRLKQLVDSGRIFTAYNGFEPSG-RIHIAQALITVMNTNNMIECG-GQMIIYIADWFAKMNLKMNG 92 (348)
T ss_dssp HHHHTT-CSEESCHHHHHHHHHHTCCEEEEEEECCCS-SCBHHHHHHHHHHHHHHHHTT-EEEEEEECHHHHHHTTGGGG
T ss_pred HHHHcC-cccccCHHHHHHHHhcCCCCEEEeccCCCC-CCchhHHHHHHHHHHHHHHcC-CcEEEEeccchhhhCCCCCC
Confidence 678999 456777788888888778999999999997 999999 67888999999998 57999999999988765 6
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCCCceEEEEcCcCCC--cccHHHHHHHhccCCHHHHHHhhCC---C--CCCceeeeech
Q 025688 137 SVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVG--GAFYKNMVKVAKCVTYNKVVGIFGF---T--GEDHIGKVSFP 209 (249)
Q Consensus 137 ~~e~i~~~~~eni~~iiA~G~dp~kt~i~~ns~~~~--~~~~~~~l~l~k~~tv~~m~~~~gf---~--~~~~ig~~~YP 209 (249)
+.++++++++++++.++|||+||+|+.||+||+|+. ..+|.+++.+++++|+|+|+++..+ . ++.++|+|+||
T Consensus 93 ~~e~i~~~~~~~~~~~la~Gldp~k~~i~~qs~~~~~~~~~~~~~~~v~~~~~~~~m~~~~~~~~r~~~~~i~~g~f~YP 172 (348)
T 2j5b_A 93 DINKIRELGRYFIEVFKACGINLDGTRFIWASEFIASNPSYIERMLDIAEFSTISRVKRCCQIMGRNESDCLKASQIFYP 172 (348)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCGGGEEEEEHHHHHHHCHHHHHHHHHHHHHHHHHHHTC-----------------CCHH
T ss_pred CHHHHHHHHHHHHHHHHHhcCCccceEEEECCHhhhhhhHHHHHHHHHHhheeHHHHHhhhhhhhhhccCCcChHHHhhH
Confidence 999999999999999999999999999999999953 2677888889999999999985443 2 24689999999
Q ss_pred HHhhhccCCcCCCcccCCCCCCCCcccccCCCCCC
Q 025688 210 PVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQVGS 244 (249)
Q Consensus 210 ~lQaaDil~~~fp~~~~~~~~~~~lVPvg~DQdp~ 244 (249)
+||||||+. + +. .++++||||.||+||
T Consensus 173 ~lQaaDil~--~---~~---~~~~~~~~G~DQ~~~ 199 (348)
T 2j5b_A 173 CMQAADVFE--L---VP---EGIDICQLGIDQRKV 199 (348)
T ss_dssp HHHHHHHHH--S---ST---TCCSEECCBGGGHHH
T ss_pred HHHHHHHHH--H---hc---CCCcEEEeccChHHH
Confidence 999999997 3 22 268999999999954
No 22
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A
Probab=100.00 E-value=1.5e-37 Score=291.78 Aligned_cols=178 Identities=15% Similarity=0.178 Sum_probs=140.6
Q ss_pred hhHHHhhccccccC-ChhHHHHHHHcCCceEEEeccCCCCCCccchhhHHHHhHHHHHHcCCCcEEEEecChhhhhccC-
Q 025688 58 PHVFLRRGVFFAHR-DLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKN- 135 (249)
Q Consensus 58 ~~~l~~Rgi~~~~~-d~~~ll~~~e~~k~~~iYtG~dPSg~sLHlGHlv~~~~l~~lQ~~g~~~v~i~IaD~~k~~~r~- 135 (249)
+..|.+||+++++. +.+.+.++++ ++++++||||+|||+|||||||++++.++|||++|| .++++|||+|+++..+
T Consensus 37 ~~~L~~Rg~~~~~~~~~e~l~~ll~-~~~~~vy~G~dPTg~sLHlGhlv~l~~l~~lQ~~G~-~~~~lIgD~haligdps 114 (392)
T 1y42_X 37 WDLFEERGYVKDTAGTKEHIAELMR-TRRIGAYVGIDPTAPSLHVGHLLPLMPLFWMYLEGY-KAFTLIGGSTAKIGDPT 114 (392)
T ss_dssp HHHHHHHTCCSCEESCHHHHHHHHH-HCCCEEEEEECCCSSSCBGGGHHHHHHHHHHHHHTC-EEEEEECTTTTTTCCCC
T ss_pred HHHHHHCCcHHhhcCCHHHHHHHHc-CCCCEEEEeecCCCCCccHHHHHHHHHHHHHHHcCC-cEEEEEcCceeEeCCCC
Confidence 46789999999664 7777766665 678999999999998899999999999999999985 6888899999876432
Q ss_pred --------CCHHHHHHHHHHHHHHHHHc-----------CCC---CCceEEEEcCcCCCcccHHHHHH-HhccCCHHHHH
Q 025688 136 --------LSVEESQRLARENAKDIIAC-----------GFD---VTKTFIFSDFDYVGGAFYKNMVK-VAKCVTYNKVV 192 (249)
Q Consensus 136 --------l~~e~i~~~~~eni~~iiA~-----------G~d---p~kt~i~~ns~~~~~~~~~~~l~-l~k~~tv~~m~ 192 (249)
++.|++++|+++..+.++|+ |+| |+++.|++||+|+....+..+++ +|+++|+|+|+
T Consensus 115 gk~~~R~~~~~e~i~~n~~~i~~~~~a~~~~~~~~~~~~g~d~~~p~ks~i~~ns~~~~~~~~l~~l~~ig~~~~v~rml 194 (392)
T 1y42_X 115 GRLKSRDHLSSSDATMNMTKIHYQLKKLWENVDTQMRARGYEADWARKRGIVNNNHWWNKQPMLEVLRRVGHALRIGPML 194 (392)
T ss_dssp C-----------CHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCTTCEEEEEETHHHHTTCCHHHHHHHHTTTCCHHHHH
T ss_pred CcchhhccCCHHHHHHHHHHHHHHHHHHhccccccccccccccCCCcccEEEEccHHHhhhhHHHHHHHHhccCcHHHHh
Confidence 58889998887665556654 456 78999999999987677777775 99999999998
Q ss_pred Hhh------CCCCCCceeeeechHHhhhccCCcCCCcccCCCCCCCCcccccCCCCCC
Q 025688 193 GIF------GFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQVGS 244 (249)
Q Consensus 193 ~~~------gf~~~~~ig~~~YP~lQaaDil~~~fp~~~~~~~~~~~lVPvg~DQdp~ 244 (249)
++. +..+++|+|+|+||+||||||+. + +. +...++||||.||.||
T Consensus 195 ~~~~~k~r~~~~~~is~gef~YPlLQAaDil~--l---~~--~~~~~i~~gG~DQ~~n 245 (392)
T 1y42_X 195 SRDTVKNKMTQGDGVSFAEFTYPIMQGWDWFE--L---FY--QQGVQMQIGGSDQYGN 245 (392)
T ss_dssp SSHHHHHTTSSSSCCCHHHHHHHHHHHHHHHH--H---HH--HHCEEEEEECTTCHHH
T ss_pred hhhHHHHHhcCCCCcccHHHHHHHHHHHHHHH--H---hc--cCCccEEecCcchHhH
Confidence 653 33456899999999999999995 1 20 0037889999999653
No 23
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A*
Probab=100.00 E-value=4.1e-37 Score=281.30 Aligned_cols=167 Identities=17% Similarity=0.191 Sum_probs=148.3
Q ss_pred HHHhhccccccCChhHHHHHHHcCCceEEEeccCCCCCCccchhhHHHHhHHHHHHcCCCcEEEEecChhhhhccCCCHH
Q 025688 60 VFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVE 139 (249)
Q Consensus 60 ~l~~Rgi~~~~~d~~~ll~~~e~~k~~~iYtG~dPSg~sLHlGHlv~~~~l~~lQ~~g~~~v~i~IaD~~k~~~r~l~~e 139 (249)
.|++|| +..+.+.++|.++++ ++++++|+||+||| +|||||++++++++|||++| ..++++|||+|+++.+..+++
T Consensus 5 ~l~~r~-~~e~~~~~~l~~~L~-~~~~~vy~G~~PTg-~lHlGhl~~l~~~~~lQ~~g-~~~~~~i~D~~a~~~~~~~~e 80 (314)
T 2zp1_A 5 EMIKRN-TSEIISEEELREVLK-KDEKSAYIGFEPSG-KIHLGHYLQIKKMIDLQNAG-FDIIILLADLAAYLNQKGELD 80 (314)
T ss_dssp HHHHTT-CSEEETHHHHHHHHT-SSSEEEEEEECCCS-SCBHHHHHHHHHHHHHHHTT-EEEEEEECHHHHHHTTCCCHH
T ss_pred HHHHcC-CeecCCHHHHHHHHc-CCCCEEEEccCCCC-CcchhhHHHHHHHHHHHHCC-CCEEEEEecceEecCCCCCHH
Confidence 578999 677888888888888 88999999999999 89999999999999999987 579999999999887657999
Q ss_pred HHHHHHHHHHHHHHHcCCCCCceEEEEcCcCCCc-ccHHHHHHHhccCCHHHHHHhhCCC----CCCceeeeechHHhhh
Q 025688 140 ESQRLARENAKDIIACGFDVTKTFIFSDFDYVGG-AFYKNMVKVAKCVTYNKVVGIFGFT----GEDHIGKVSFPPVQAV 214 (249)
Q Consensus 140 ~i~~~~~eni~~iiA~G~dp~kt~i~~ns~~~~~-~~~~~~l~l~k~~tv~~m~~~~gf~----~~~~ig~~~YP~lQaa 214 (249)
++++++++++++++|||+| +.|++||+|..+ .+|++++++++++|+++|+++..+. ++.++|+|+||+||||
T Consensus 81 ~i~~~~~~~~~~~~a~G~d---~~~~~qs~~~~~~~~~~~~~~l~~~~t~~~l~~~~~~~~~~~~~~~~g~~~YP~LQaa 157 (314)
T 2zp1_A 81 EIRKIGDYNKKVFEAMGLK---AKYVYGSEFQLDKDYTLNVYRLALKTTLKRARRSMELIAREDENPKVAEVIYPIMQVN 157 (314)
T ss_dssp HHHHHHHHHHHHHHHTTCC---CEEEEGGGTTTSHHHHHHHHHHHHHSCHHHHHHHTTTTSCCCSSCCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCC---eEEEECChhhcchHHHHHHHHHHCcCcHHHHhccchhhhhccCCCCchhhhhHHHHHH
Confidence 9999999999999999998 899999999764 4688888899999999999986542 2238999999999999
Q ss_pred ccCCcCCCcccCCCCCCCCcccccCCCCCC
Q 025688 215 PSFPSSFPHLFSGKDHLRCLIPCAIDQVGS 244 (249)
Q Consensus 215 Dil~~~fp~~~~~~~~~~~lVPvg~DQdp~ 244 (249)
||+. + .+++||||+||.||
T Consensus 158 Dil~------~-----~~~~v~~G~DQ~~~ 176 (314)
T 2zp1_A 158 TSHY------L-----GVDVAVGGMEQRKI 176 (314)
T ss_dssp HHHH------H-----TCSEEEEEGGGHHH
T ss_pred hHHh------h-----CCCEEEcChhHHHH
Confidence 9996 3 58999999999863
No 24
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum}
Probab=100.00 E-value=2.9e-37 Score=288.22 Aligned_cols=171 Identities=11% Similarity=0.129 Sum_probs=149.0
Q ss_pred HHHhhccccccCChhHHHHHHHcCCceEEEeccCCCCCCccchhhHH-HHhHHHHHHcCCCcEEEEecChhhhhccC--C
Q 025688 60 VFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVP-FMFTKYLQDAFKVPLVIQLTDDEKCMWKN--L 136 (249)
Q Consensus 60 ~l~~Rgi~~~~~d~~~ll~~~e~~k~~~iYtG~dPSg~sLHlGHlv~-~~~l~~lQ~~g~~~v~i~IaD~~k~~~r~--l 136 (249)
.+++||+.. +.+.++|.+++++++++++|+||+||| +|||||.+. .+.+++||++| +.++++|||+|+++.++ .
T Consensus 32 ~li~r~~~e-~~~~~~L~~~L~~~~~~~iy~G~~PTg-~lHlG~gvl~~~~~~~lQ~~G-~~~~~lIaD~ha~i~d~~~~ 108 (373)
T 3vgj_A 32 NDILSISSE-CIQPDELRVKLLLKRKLICYDGFEPSG-RMHIAQGLLKSIIVNKLTSNG-CTFIFWIADWFAHLNNKMSG 108 (373)
T ss_dssp HHHHHHCSE-EECHHHHHHHHHHCSSCEEEEEECCCS-SCBHHHHHHHHHHHHHHHTTT-CEEEEEECHHHHHHTTGGGG
T ss_pred HHHHcCcce-ecCHHHHHHHHhcCCCceEEeCCCCCC-CceehhhHHHHHHHHHHHHCC-CcEEEEEecceeEecCCCCC
Confidence 678999886 667788989898888999999999999 999999764 44689999998 58999999999988653 6
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCCCceEEEEcCcCC-C--cccHHHHHHHhccCCHHHHHHhhCC---C--CCCceeeeec
Q 025688 137 SVEESQRLARENAKDIIACGFDVTKTFIFSDFDYV-G--GAFYKNMVKVAKCVTYNKVVGIFGF---T--GEDHIGKVSF 208 (249)
Q Consensus 137 ~~e~i~~~~~eni~~iiA~G~dp~kt~i~~ns~~~-~--~~~~~~~l~l~k~~tv~~m~~~~gf---~--~~~~ig~~~Y 208 (249)
+.++++++++++++.++|+|+||+|+.||+||+|. . ..+|.+++.+++++|+++|+++..+ . ++.++|+|+|
T Consensus 109 ~~~~i~~~~~~~~~~~~a~G~dp~k~~i~~~S~~~~~~~~l~~~~~~~i~~~~tv~rm~~~~~~~~r~~~~~~~~g~f~Y 188 (373)
T 3vgj_A 109 DLKKIKKVGSYFIEVWKSCGMNMENVQFLWASEEINKKPNEYWSLVLDISRSFNINRMKRCLKIMGRSEGEENYCSQILY 188 (373)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCSTTEEEEEHHHHHHHSHHHHHHHHHHHHTTSBHHHHHTTGGGGTCCTTSCCBTHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHcCCChhheEEEeChhHHhhhhHHHHHHHHHHHccCcHHHHHhhhHHHhhhccCCCChHHHHH
Confidence 89999999999999999999999999999999997 2 3577878889999999999997543 2 3678999999
Q ss_pred hHHhhhccCCcCCCcccCCCCCCCCcccccCCCCCC
Q 025688 209 PPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQVGS 244 (249)
Q Consensus 209 P~lQaaDil~~~fp~~~~~~~~~~~lVPvg~DQdp~ 244 (249)
|+||||||+. + .+++||||.||.||
T Consensus 189 PlLQaaDil~------l-----~ad~vpgG~DQ~~~ 213 (373)
T 3vgj_A 189 PCMQCADIFF------L-----NVDICQLGIDQRKV 213 (373)
T ss_dssp HHHHHHHHHH------T-----TCSEECCBGGGHHH
T ss_pred HHHHHhcccc------c-----CCcEEEcchhhHHH
Confidence 9999999997 3 58999999999854
No 25
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A*
Probab=100.00 E-value=8.6e-36 Score=278.23 Aligned_cols=171 Identities=15% Similarity=0.134 Sum_probs=144.3
Q ss_pred hHHHhhccccccCChhHHHHHHHcCCceEEEeccCCCCCCccchhhHHHHhHHHHHHcCCCcEEEEecChhhhhccCCCH
Q 025688 59 HVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSV 138 (249)
Q Consensus 59 ~~l~~Rgi~~~~~d~~~ll~~~e~~k~~~iYtG~dPSg~sLHlGHlv~~~~l~~lQ~~g~~~v~i~IaD~~k~~~r~l~~ 138 (249)
..|++|| +.++.+.++|.+++++ ++.++||||+||| +|||||++++++++|+|++| ..++++|||+|+++.++.+.
T Consensus 11 ~~l~~Rg-~~e~~~~~~L~~~L~~-~~~~vy~G~~PTG-~lHlG~~~~~l~~~~~~q~g-~~~i~~I~D~ha~t~~~~~~ 86 (372)
T 1n3l_A 11 LHLITRN-LQEVLGEEKLKEILKE-RELKIYWGTATTG-KPHVAYFVPMSKIADFLKAG-CEVTILFADLHAYLDNMKAP 86 (372)
T ss_dssp HHHHHTT-CSEEECHHHHHHHHTT-SCCEEEEEECCSS-CCBGGGHHHHHHHHHHHHTT-CEEEEEECHHHHHHTTTTSC
T ss_pred HHHHHcC-CeeecCHHHHHHHHhc-CCCEEEeCcCCCC-cccHHHHHHHHHHHHHHHCC-CCEEEEEcCCceeeCCCCCH
Confidence 4789999 5556666777777774 7789999999999 99999999999999999987 58999999999998755566
Q ss_pred HHHHHHH---HHH-HHH-HHHcCCCCCceEEEEcCcC-CCcccHHHHHHHhccCCHHHHHHh----hCCCCCCceeeeec
Q 025688 139 EESQRLA---REN-AKD-IIACGFDVTKTFIFSDFDY-VGGAFYKNMVKVAKCVTYNKVVGI----FGFTGEDHIGKVSF 208 (249)
Q Consensus 139 e~i~~~~---~en-i~~-iiA~G~dp~kt~i~~ns~~-~~~~~~~~~l~l~k~~tv~~m~~~----~gf~~~~~ig~~~Y 208 (249)
+++.++. +++ +.. ++|||+||+++.||+||+| ....++.+++++++++|++++++. .++.++.++|+|+|
T Consensus 87 ~~l~~~~~~~~~~~i~~~lla~Gldp~k~~i~~qS~~~~~~~~~~~~~~l~~~~t~~~~~~~~~~v~~~~~~~~~g~~~Y 166 (372)
T 1n3l_A 87 WELLELRVSYYENVIKAMLESIGVPLEKLKFIKGTDYQLSKEYTLDVYRLSSVVTQHDSKKAGAEVVKQVEHPLLSGLLY 166 (372)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCCTTEEEEEGGGTTTSHHHHHHHHHHHTTSCHHHHHHHTTTTSCCCSSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCChhhcEEEECCeecccHHHHHHHHHHHhhCcHHHHHhchhhhhcccCCCcceeeec
Confidence 6654444 344 554 5899999999999999999 566888899999999999999986 35556789999999
Q ss_pred hHHhhhccCCcCCCcccCCCCCCCCcccccCCCCCC
Q 025688 209 PPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQVGS 244 (249)
Q Consensus 209 P~lQaaDil~~~fp~~~~~~~~~~~lVPvg~DQdp~ 244 (249)
|++|||||+. + +.++||+|.||.+|
T Consensus 167 P~lQaaDil~------~-----~a~~v~~G~DQ~~~ 191 (372)
T 1n3l_A 167 PGLQALDEEY------L-----KVDAQFGGIDQRKI 191 (372)
T ss_dssp HHHHHHHHHH------T-----TCSEEEEEGGGHHH
T ss_pred chHhhccHHH------h-----cCCEEEcChhHHHH
Confidence 9999999997 3 68999999999864
No 26
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A*
Probab=100.00 E-value=2.3e-36 Score=277.36 Aligned_cols=143 Identities=15% Similarity=0.170 Sum_probs=127.9
Q ss_pred ceEEEeccCCCCCCccchhhHH-HHhHHHHHHcCCCcEEEEecChhhhhccCCCHHHHHHHHHHHHHHHHHcCCCCCceE
Q 025688 85 KFYLYTGRGPSSEALHLGHLVP-FMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTF 163 (249)
Q Consensus 85 ~~~iYtG~dPSg~sLHlGHlv~-~~~l~~lQ~~g~~~v~i~IaD~~k~~~r~l~~e~i~~~~~eni~~iiA~G~dp~kt~ 163 (249)
..++||||+||| +||||||++ +..+++||+ | ..++++|||+|+++.. .+++++++++++++++|+|||+||+|++
T Consensus 3 ~~~vysG~~PTg-~lHlG~~lg~l~~~~~lQ~-g-~~~~~~iaD~ha~~~~-~~~~~l~~~~~~~~~~~lA~Gldp~k~~ 78 (322)
T 3tzl_A 3 AMRVLTGLQPSG-DLHIGNYFGAIKQMVDAQE-K-SQMFMFIANYHAMTSS-QDGEKLKQNSLKAAAAFLSLGIDPQKSV 78 (322)
T ss_dssp -CCBEEEECCSS-CCBHHHHHHTHHHHHHTTT-T-SCCEEEECHHHHTTTC-CCHHHHHHHHHHHHHHHHHTTCCTTTSE
T ss_pred ceEEEEccCCCc-cccHHHHHHHHHHHHHHhc-C-CCEEEEEecCeeecCC-CCHHHHHHHHHHHHHHHHHcCCCccceE
Confidence 468999999999 899999996 667999999 6 5789999999998864 6999999999999999999999999999
Q ss_pred EEEcCcCCCcccHHHHHHHhccCCHHHHHHh------hCCCCCCceeeeechHHhhhccCCcCCCcccCCCCCCCCcccc
Q 025688 164 IFSDFDYVGGAFYKNMVKVAKCVTYNKVVGI------FGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPC 237 (249)
Q Consensus 164 i~~ns~~~~~~~~~~~l~l~k~~tv~~m~~~------~gf~~~~~ig~~~YP~lQaaDil~~~fp~~~~~~~~~~~lVPv 237 (249)
||+||+|. .++++.+.+++++++++|.+. .+..++.|+|+|+||+||||||+. | .+|+|||
T Consensus 79 i~~qS~~~--~~~el~~~l~~~~~~~~l~r~~~~K~~~~~~~~~~~g~f~YP~LQAaDil~--~---------~~~~vpv 145 (322)
T 3tzl_A 79 FWLQSDVK--EVMELYWILSQFTPMGLLERAHSYKDKVAKGLSASHGLFSYPVLMAADILL--F---------DTRIVPV 145 (322)
T ss_dssp EEEGGGCT--HHHHHHHHHGGGCBHHHHHSCHHHHHHHHTTCCCBHHHHHHHHHHHHHHHH--T---------TCSEEEC
T ss_pred EEECCcch--hHHHHHHHHhccCcHHHHHhhhHHHHHHccCCCCchHHHHHHHHHHHHHHH--h---------CCcEEEe
Confidence 99999996 478888999999999988664 444567999999999999999997 3 6899999
Q ss_pred cCCCCCC
Q 025688 238 AIDQVGS 244 (249)
Q Consensus 238 g~DQdp~ 244 (249)
|.||.||
T Consensus 146 G~DQ~~h 152 (322)
T 3tzl_A 146 GKDQIQH 152 (322)
T ss_dssp CGGGHHH
T ss_pred ccchHHH
Confidence 9999964
No 27
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima}
Probab=100.00 E-value=1.9e-36 Score=279.71 Aligned_cols=145 Identities=20% Similarity=0.245 Sum_probs=130.0
Q ss_pred ceEEEeccCCCCCCccchhhHHHH-hHHHHHHcCCCcEEEEecChhhhhccCCCHHHHHHHHHHHHHHHHHcCCCCCceE
Q 025688 85 KFYLYTGRGPSSEALHLGHLVPFM-FTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTF 163 (249)
Q Consensus 85 ~~~iYtG~dPSg~sLHlGHlv~~~-~l~~lQ~~g~~~v~i~IaD~~k~~~r~l~~e~i~~~~~eni~~iiA~G~dp~kt~ 163 (249)
..++|+|++||| +||||||++++ .+++||++| ..++++|||+|+++.+..+++++++++++|+++|+|||+||+|+.
T Consensus 12 ~~~v~~G~~PTG-~lHLGn~~g~l~~~~~lQ~~G-~~~~~~IaD~ha~t~~~~dp~~~~~~~~~~~~~~lA~Gldp~k~~ 89 (340)
T 2g36_A 12 HMRILSGMRPTG-KLHIGHLVGALENWVKLQEEG-NECFYFVADWHALTTHYDDVSKLKEYTRDLVRGFLACGIDPEKSV 89 (340)
T ss_dssp CCEEEEEECCCS-SCBHHHHHTHHHHHHHHHHTT-CEEEEEECHHHHHHHHTTCCTTHHHHHHHHHHHHHHTTCCTTTSE
T ss_pred CCeEEEeeCCCC-cccHHhHHHHHHHHHHHHHCC-CCEEEEEecceeecCCCCCHHHHHHHHHHHHHHHHHhCCChhHeE
Confidence 458999999999 99999999887 788999998 578999999999987567888899999999999999999999999
Q ss_pred EEEcCcCCCcccHHHHHHHhccCCHHHHHHhhCCCC---------CCceeeeechHHhhhccCCcCCCcccCCCCCCCCc
Q 025688 164 IFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTG---------EDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCL 234 (249)
Q Consensus 164 i~~ns~~~~~~~~~~~l~l~k~~tv~~m~~~~gf~~---------~~~ig~~~YP~lQaaDil~~~fp~~~~~~~~~~~l 234 (249)
||+||+|. .+.++.+.+++.+|+++|.+..++++ +.++|+|+||+||||||+. | .+|+
T Consensus 90 if~qS~~~--~~~el~~~l~~~~~v~~l~r~~~~k~~~~r~~~~~~~~~g~f~YPvLQAaDil~------~-----~~~~ 156 (340)
T 2g36_A 90 IFVQSGVK--EHAELALLFSMIVSVSRLERVPTYKEIKSELNYKDLSTAGFLIYPVLQAADILI------Y-----KAEG 156 (340)
T ss_dssp EEEGGGCT--HHHHHHHHHHTTSCHHHHHTCHHHHTC-------CCCSHHHHTHHHHHHHHHHT------T-----TCSE
T ss_pred EEECCchH--HHHHHHHHHHccCCHHHHHHhHHHHhHHHHhccCCCCChHHhhhHHHHHhhHHH------h-----CCCE
Confidence 99999996 47888889999999999988765433 5799999999999999997 3 6999
Q ss_pred ccccCCCCCC
Q 025688 235 IPCAIDQVGS 244 (249)
Q Consensus 235 VPvg~DQdp~ 244 (249)
||||+||.||
T Consensus 157 vpvG~DQ~~h 166 (340)
T 2g36_A 157 VPVGEDQVYH 166 (340)
T ss_dssp EEECGGGHHH
T ss_pred EEcccchHHH
Confidence 9999999965
No 28
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus}
Probab=100.00 E-value=9.7e-36 Score=274.67 Aligned_cols=144 Identities=16% Similarity=0.152 Sum_probs=128.9
Q ss_pred EEEeccCCCCCCccchhhHHHH-hHHHHHHcCCCcEEEEecChhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCCCCceEE
Q 025688 87 YLYTGRGPSSEALHLGHLVPFM-FTKYLQDAFKVPLVIQLTDDEKCMWK-NLSVEESQRLARENAKDIIACGFDVTKTFI 164 (249)
Q Consensus 87 ~iYtG~dPSg~sLHlGHlv~~~-~l~~lQ~~g~~~v~i~IaD~~k~~~r-~l~~e~i~~~~~eni~~iiA~G~dp~kt~i 164 (249)
++||||+||| +||||||++++ .+++||++|...++++|||+|+++.+ ..+++++++++++|+++|+|||+||+++.|
T Consensus 3 ~vy~G~~PTg-~lHlGh~~g~l~~~~~lQ~~G~~~~~~~IaD~~a~~~~~~~~~~~i~~~~~~~~~~~la~Gldp~k~~i 81 (337)
T 2el7_A 3 RVLSGIQPSG-EIHIGNYLGAIKQWVAIGEKLGRDAFFCIVDYHALTNPLAYDPSTLAQRTFEAALVNIAAGLDPEKVTL 81 (337)
T ss_dssp CEEEEECSCS-CCBHHHHHTHHHHHHHHHHHHGGGEEEEECGGGGGGSTTTSCHHHHHHHHHHHHHHHHHHTCCTTTSEE
T ss_pred EEEEeeCCCC-cccHHHHHHHHHHHHHHHhcCCCCEEEEEeCceeecCCCCCCHHHHHHHHHHHHHHHHHhCCChhheEE
Confidence 7999999999 79999999776 68889999733689999999998875 378999999999999999999999999999
Q ss_pred EEcCcCCCcccHHHHHHHhccCCHHHHHHhhCC------CCCCceeeeechHHhhhccCCcCCCcccCCCCCCCCccccc
Q 025688 165 FSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGF------TGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCA 238 (249)
Q Consensus 165 ~~ns~~~~~~~~~~~l~l~k~~tv~~m~~~~gf------~~~~~ig~~~YP~lQaaDil~~~fp~~~~~~~~~~~lVPvg 238 (249)
|+||+|. .+.++.+.+++++|+++|.+..++ ++++|+|+|+||+||||||+. | .+|+||||
T Consensus 82 ~~qS~~~--~~~el~~~l~~~~~~~~l~r~~~~k~r~~~~~~~~~g~f~YPvLQaaDil~------~-----~~~lvp~G 148 (337)
T 2el7_A 82 FVQSHVP--EHTELSWVFTTLTPLGDLTRMTQFKDKASKQETVWSGLLMYPVLQAADILI------Y-----KADTVPVG 148 (337)
T ss_dssp EEGGGST--HHHHHHHHHHHTSBHHHHHTSHHHHHHTTSSSCCBHHHHHHHHHHHHHHHH------T-----TCCEEECC
T ss_pred EEcCcch--hhHHHHHHHHccCCHHHHHHhHHHHHHhccCCCCChHHHHhHHHHHhhHHh------h-----CCcEEEcc
Confidence 9999997 477888889999999999988654 357899999999999999997 3 69999999
Q ss_pred CCCCCC
Q 025688 239 IDQVGS 244 (249)
Q Consensus 239 ~DQdp~ 244 (249)
+||.||
T Consensus 149 ~DQ~~~ 154 (337)
T 2el7_A 149 EDQVQH 154 (337)
T ss_dssp GGGCHH
T ss_pred cchHHH
Confidence 999965
No 29
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*
Probab=100.00 E-value=3.8e-35 Score=272.03 Aligned_cols=146 Identities=25% Similarity=0.224 Sum_probs=129.3
Q ss_pred CCceEEEeccCCCCCCccchhhHHHH-hHHHHHHcCCCcEEEEecChhhhhccCCCHHHHHHHHHHHHHHHHHcCCCCCc
Q 025688 83 GEKFYLYTGRGPSSEALHLGHLVPFM-FTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTK 161 (249)
Q Consensus 83 ~k~~~iYtG~dPSg~sLHlGHlv~~~-~l~~lQ~~g~~~v~i~IaD~~k~~~r~l~~e~i~~~~~eni~~iiA~G~dp~k 161 (249)
++++++|+||+||| .||||||++++ .+++||+. ..++++|||+|+++.++.+.+++++++++++++|+|||+||+|
T Consensus 20 ~~~~~vysG~~PTG-~lHLGn~~g~l~~~~~lQ~~--~~~~~~IaD~ha~~~~~~~~e~i~~~~~~~~~~~la~Gldp~k 96 (351)
T 1yi8_B 20 PARPRVLTGDRPTG-ALHLGHLAGSLQNRVRLQDE--AELFVLLADVQALTDHFDRPEQVRENVLAVALDYLAAGLDPQK 96 (351)
T ss_dssp -CCSEEEEEECCSS-CCBHHHHHHTHHHHHHHTSS--SEEEEEECHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCTTT
T ss_pred CCCcEEEEeeCCCC-CccHHHHHHHHHHHHHHHHh--CCeEEEEecchhhcCCCCCHHHHHHHHHHHHHHHHHhCCChhh
Confidence 46789999999999 69999999887 35559997 3689999999999876799999999999999999999999999
Q ss_pred eEEEEcCcCCCcccHHHHHHHhccCCHHHHHHh---------hCCCCCCceeeeechHHhhhccCCcCCCcccCCCCCCC
Q 025688 162 TFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGI---------FGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLR 232 (249)
Q Consensus 162 t~i~~ns~~~~~~~~~~~l~l~k~~tv~~m~~~---------~gf~~~~~ig~~~YP~lQaaDil~~~fp~~~~~~~~~~ 232 (249)
+.||+||+|.. +.++.+.+++++++++|.++ .||+++.++|+|+||+||||||+. | .+
T Consensus 97 ~~i~~qS~~~~--~~el~~~l~~~~~v~~l~r~~~~k~~~~~~~f~~~~~~g~f~YPvLQAaDil~------~-----~~ 163 (351)
T 1yi8_B 97 TTCVVQSAVPE--LAELTVYFLNLVTVSHLRQNPTVKAEIAQKGYGERVPAGFFVYPVSQAADIAA------F-----GA 163 (351)
T ss_dssp EEEEEGGGCTH--HHHHHHHHHTTSBHHHHHTCHHHHHHHHHHTCTTCCBHHHHHHHHHHHHHHHH------H-----TC
T ss_pred cEEEEcCchhh--HHHHHHHHhccCCHHHHHhhhHHHHHHhhcCCCCCCchHhhhhHHHHHhhHHh------c-----CC
Confidence 99999999963 77888889999999998753 456678999999999999999997 4 68
Q ss_pred CcccccCCCCCC
Q 025688 233 CLIPCAIDQVGS 244 (249)
Q Consensus 233 ~lVPvg~DQdp~ 244 (249)
|+||||+||.||
T Consensus 164 ~~vpvG~DQ~~h 175 (351)
T 1yi8_B 164 TLVPVGDDQLPM 175 (351)
T ss_dssp SEEEECGGGHHH
T ss_pred CEEEecCCcHHH
Confidence 999999999964
No 30
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor}
Probab=100.00 E-value=3.9e-35 Score=270.96 Aligned_cols=142 Identities=14% Similarity=0.138 Sum_probs=126.5
Q ss_pred eEEEeccCCCCCCccchhhHHHH-hHHHHHHcCCCcEEEEecChhhhhccCCCHHHHHHHHHHHHHHHHHcCCCCCceEE
Q 025688 86 FYLYTGRGPSSEALHLGHLVPFM-FTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFI 164 (249)
Q Consensus 86 ~~iYtG~dPSg~sLHlGHlv~~~-~l~~lQ~~g~~~v~i~IaD~~k~~~r~l~~e~i~~~~~eni~~iiA~G~dp~kt~i 164 (249)
.++|+|++||| .||||||++++ .+++||+. ..++++|||+|+++. ..+++++++++++|+++|+|||+||+|++|
T Consensus 7 ~~v~sG~~PTG-~lHLGhy~g~l~~~~~lQ~~--~~~~~~iaD~ha~~~-~~~~~~~~~~~~~~~~~~lA~GlDp~k~~i 82 (341)
T 3sz3_A 7 PIVLSGVQPSG-ELSIGNYLGALRQWQQMQDD--YDCQYCVVDLHAITV-RQDPQALHEATLDALAICLAVGVDPKKSTL 82 (341)
T ss_dssp CEEEEEECSSS-CCBHHHHHHTGGGHHHHHHH--SEEEEEECHHHHTTS-CCCHHHHHHHHHHHHHHHHHTTCCTTTSEE
T ss_pred CEEEeCcCCCC-cccHHHHHHHHHHHHHHHhc--CeEEEEEecceeEcC-CCCHHHHHHHHHHHHHHHHHcCCChhhcEE
Confidence 48999999999 79999999987 57789995 479999999999987 589999999999999999999999999999
Q ss_pred EEcCcCCCcccHHHHHHHhccCCHHHHHHhhCC-------CCCCceeeeechHHhhhccCCcCCCcccCCCCCCCCcccc
Q 025688 165 FSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGF-------TGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPC 237 (249)
Q Consensus 165 ~~ns~~~~~~~~~~~l~l~k~~tv~~m~~~~gf-------~~~~~ig~~~YP~lQaaDil~~~fp~~~~~~~~~~~lVPv 237 (249)
|.||+|. .+.++.|.+++.++++++.+..++ .++.++|+|+||+|||||||+ | ++|+|||
T Consensus 83 ~~qS~v~--~~~el~~~l~~~~~~~~l~R~~~~k~~~~~~~~~~~~g~~~YP~lQaaDil~--~---------~ad~vpv 149 (341)
T 3sz3_A 83 FVQSHVP--EHAQLGWVLNCYTQMGELSRMTQFKDKSARYANDVNAGLFGYPVLMAADILL--Y---------GAHQVPV 149 (341)
T ss_dssp EEGGGCT--HHHHHHHHHHTTSCHHHHHTCHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHT--T---------TCSEECC
T ss_pred Eeccchh--hhHHHHHHHHhhccHHHHHHHHHHHHHHhhccCCCChhhHHhHHHHHHHHHH--c---------CCCEEEe
Confidence 9999996 467888888899999988887654 246899999999999999997 3 6999999
Q ss_pred cCCCCCC
Q 025688 238 AIDQVGS 244 (249)
Q Consensus 238 g~DQdp~ 244 (249)
|+||+||
T Consensus 150 G~DQ~~h 156 (341)
T 3sz3_A 150 GSDQKQH 156 (341)
T ss_dssp CGGGHHH
T ss_pred ccchHHH
Confidence 9999954
No 31
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=100.00 E-value=1.1e-34 Score=288.50 Aligned_cols=171 Identities=16% Similarity=0.140 Sum_probs=147.2
Q ss_pred HHHhhccccccCChhHHHHHHHcCCceEEEeccCCCCCCccchhhHHH-HhHHHHHHcCCCcEEEEecChhhhhccC--C
Q 025688 60 VFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPF-MFTKYLQDAFKVPLVIQLTDDEKCMWKN--L 136 (249)
Q Consensus 60 ~l~~Rgi~~~~~d~~~ll~~~e~~k~~~iYtG~dPSg~sLHlGHlv~~-~~l~~lQ~~g~~~v~i~IaD~~k~~~r~--l 136 (249)
.+++||... +.++++|.+++++++++++|+||+||| +|||||+++. +.+++||++| +.++++|||+|+++.++ .
T Consensus 16 ~~~~~~~~e-~~~~~eL~~~L~~~~~~~vy~G~~PTg-~lHLG~~v~~~~~~~~lQ~~G-~~~~~lIaD~ha~~~d~~~~ 92 (690)
T 3p0j_A 16 KLLRSVGEE-CIQESELRNLIEKKPLIRCYDGFEPSG-RMHIAQGIFKAVNVNKCTAAG-CEFVFWVADWFALMNDKVGG 92 (690)
T ss_dssp HHHHHTCSE-EECHHHHHHHHHHCTTEEEEEEECCCS-CCBHHHHHHHHHHHHHHHHTT-EEEEEEECCGGGGGGCTTTT
T ss_pred HHHhhCcee-ecCHHHHHHHHhcCCCceEEeeecCCC-cchhHhhHHHHHHHHHHHHCC-CcEEEEEeeeEEEecCCCcc
Confidence 467888775 557789999998889999999999999 9999997765 4688999998 57899999999988653 7
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCCCceEEEEcCcCCCc---ccHHHHHHHhccCCHHHHHHhhCCC----CCCceeeeech
Q 025688 137 SVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGG---AFYKNMVKVAKCVTYNKVVGIFGFT----GEDHIGKVSFP 209 (249)
Q Consensus 137 ~~e~i~~~~~eni~~iiA~G~dp~kt~i~~ns~~~~~---~~~~~~l~l~k~~tv~~m~~~~gf~----~~~~ig~~~YP 209 (249)
+.++++++++++++.|+|||+||+|+.||+||+|+.. .+|.+++++++++|+++|+++..+. .++++|+|+||
T Consensus 93 ~~e~i~~~~~~~~~~~lA~GlDp~k~~i~~qS~~v~~~~~l~~~~~~~i~~~~tv~~m~~~~~~~~r~~~~i~~g~f~YP 172 (690)
T 3p0j_A 93 ELEKIRIVGRYLIEVWKAAGMDMDKVLFLWSSEEITSHADTYWRMVLDIGRQNTIARIKKCCTIMGKTEGTLTAAQVLYP 172 (690)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCGGGEEEEEHHHHHTTSHHHHHHHHHHHHHTSCHHHHHTTC-------CCCCCSCSSHH
T ss_pred hHHHHHHHHHHHHHHHHHcCCChHHeEEEechHHHHhhHHHHHHHHHHHHhhCCHHHHHhhhhhhhhccCCCchhhHhhH
Confidence 8999999999999999999999999999999998652 4678888899999999999875442 23799999999
Q ss_pred HHhhhccCCcCCCcccCCCCCCCCcccccCCCCCC
Q 025688 210 PVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQVGS 244 (249)
Q Consensus 210 ~lQaaDil~~~fp~~~~~~~~~~~lVPvg~DQdp~ 244 (249)
+||||||+. + ++++||||.||.||
T Consensus 173 lLQAaDil~------~-----~ad~vpvG~DQ~~~ 196 (690)
T 3p0j_A 173 LMQCCDIFF------L-----KADICQLGLDQRKV 196 (690)
T ss_dssp HHHHHHHHH------T-----TCSEECCBGGGHHH
T ss_pred HHHHHHHHh------h-----CCCEEeccccHHHH
Confidence 999999997 3 58999999999954
No 32
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3e-34 Score=269.66 Aligned_cols=171 Identities=15% Similarity=0.098 Sum_probs=144.4
Q ss_pred HHHhhccccccCChhHHHHHHHc-CCceEEEeccCCCCCCccchhhHHHHhHHHHHHcCCCcEEEEecChhhhhccC-CC
Q 025688 60 VFLRRGVFFAHRDLNDILDAYEK-GEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKN-LS 137 (249)
Q Consensus 60 ~l~~Rgi~~~~~d~~~ll~~~e~-~k~~~iYtG~dPSg~sLHlGHlv~~~~l~~lQ~~g~~~v~i~IaD~~k~~~r~-l~ 137 (249)
.|++|| +..+.+.++|.+++++ ++++++|+||+||| +|||||+++++++.++|++| ..++++|||+|+++.+. .+
T Consensus 14 ~l~~rg-~~e~~~~e~L~~~L~~~~~p~~vy~G~~PTG-~LHlG~~~~al~~~~~~q~g-~~~ii~I~D~ha~t~~~~~~ 90 (394)
T 2dlc_X 14 GLITKN-LQEVLNPQIIKDVLEVQKRHLKLYWGTAPTG-RPHCGYFVPMTKLADFLKAG-CEVTVLLADLHAFLDNMKAP 90 (394)
T ss_dssp HHHHTT-CSEEECHHHHHHHHHTSCSCCEEEEEECCCS-CCBGGGHHHHHHHHHHHHTT-CEEEEEECHHHHHHTTTSSC
T ss_pred HHHHcC-cceecCHHHHHHHHHccCCCeEEEEEeCCCC-CccHHHHHHHHHHHHHHHcC-CcEEEEEcCCccccCCCCCc
Confidence 678999 7778888999999984 68899999999999 99999999999998999877 57999999999988643 55
Q ss_pred HHHHHHHHH---HHH-HHHHHcCCCCCceEEEEcCcCCC-cccHHHHHHHhccCCHHHHHHhh----CCCCCCceeeeec
Q 025688 138 VEESQRLAR---ENA-KDIIACGFDVTKTFIFSDFDYVG-GAFYKNMVKVAKCVTYNKVVGIF----GFTGEDHIGKVSF 208 (249)
Q Consensus 138 ~e~i~~~~~---eni-~~iiA~G~dp~kt~i~~ns~~~~-~~~~~~~l~l~k~~tv~~m~~~~----gf~~~~~ig~~~Y 208 (249)
.+.++.++. +++ +.++|||+||+++.||+||+|.. ..++.+++++++++|+++|++.. .+.++.++|+|+|
T Consensus 91 ~e~~~~~~~~~~~~i~~~l~a~Gldp~k~~i~~qS~~~~~~~~~~~~~~l~~~~t~~~l~r~~~~~~r~~~~~~~g~~~Y 170 (394)
T 2dlc_X 91 LEVVNYRAKYYELTIKAILRSINVPIEKLKFVVGSSYQLTPDYTMDIFRLSNIVSQNDAKRAGADVVKQVANPLLSGLIY 170 (394)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHTTCCCTTCEEEETHHHHTSHHHHHHHHHHHTTSCHHHHHHHTTTTSCCCSSCCTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCChhHcEEEeCchhcchHHHHHHHHHHhCcCcHHHHhcccHhhhcccCCccceeeec
Confidence 666665542 333 46789999999999999999964 46778899999999999999863 3345678999999
Q ss_pred hHHhhhccCCcCCCcccCCCCCCCCcccccCCCCCC
Q 025688 209 PPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQVGS 244 (249)
Q Consensus 209 P~lQaaDil~~~fp~~~~~~~~~~~lVPvg~DQdp~ 244 (249)
|+|||||++. + ..++||+|.||.+|
T Consensus 171 P~lQaaD~l~------~-----~~~~v~~G~DQ~~~ 195 (394)
T 2dlc_X 171 PLMQALDEQF------L-----DVDCQFGGVDQRKI 195 (394)
T ss_dssp HHHHHHHHHH------T-----TCSEEEEEGGGHHH
T ss_pred hhHhhccHhh------h-----CCCEEecCccHHHH
Confidence 9999999997 3 58999999999854
No 33
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} SCOP: c.26.1.1
Probab=100.00 E-value=6.7e-35 Score=269.73 Aligned_cols=143 Identities=16% Similarity=0.199 Sum_probs=124.2
Q ss_pred ceEEEeccCCCCCCccchhhHHHHh-HHHHHHcCCCcEEEEecChhhhhccCCCHHHHHHHHHHHHHHHHHcCCCCCceE
Q 025688 85 KFYLYTGRGPSSEALHLGHLVPFMF-TKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTF 163 (249)
Q Consensus 85 ~~~iYtG~dPSg~sLHlGHlv~~~~-l~~lQ~~g~~~v~i~IaD~~k~~~r~l~~e~i~~~~~eni~~iiA~G~dp~kt~ 163 (249)
+.++|+|++||| .||||||++++. +++||+. +.++++|||+|+++. ..+++++++++++|+++|+|||+||+|++
T Consensus 15 ~~~i~sG~~PTG-~lHLGh~vg~l~~~~~lQ~~--~~~~~~iaD~hA~t~-~~~~~~~~~~~~~~~~~~lA~GlDp~k~~ 90 (346)
T 3n9i_A 15 KPIVFSGAQPSG-ELTIGNYMGALRQWVQMQDD--YDCIYCIVDLHAITA-RQDPALLRKRTLDTLALYLACGIDPKKST 90 (346)
T ss_dssp CCEEEEEECSCS-CCBHHHHHHTHHHHHTTTTT--SEEEEEECHHHHTTS-CCCHHHHHHHHHHHHHHHHHHTCCTTTSE
T ss_pred CCEEEECcCCCC-cccHHHHHHHHHHHHHHHhh--CcEEEEEecceeecC-CCCHHHHHHHHHHHHHHHHHcCCCccceE
Confidence 348999999999 699999998873 4559984 579999999999987 58999999999999999999999999999
Q ss_pred EEEcCcCCCcccHHHHHHHhccCCHHHHHHhhCCC-------CCCceeeeechHHhhhccCCcCCCcccCCCCCCCCccc
Q 025688 164 IFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFT-------GEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIP 236 (249)
Q Consensus 164 i~~ns~~~~~~~~~~~l~l~k~~tv~~m~~~~gf~-------~~~~ig~~~YP~lQaaDil~~~fp~~~~~~~~~~~lVP 236 (249)
||.||+|. .+.++.|.+.+.++++++.+..+++ ++.++|+|+||+|||||||+ | ++|+||
T Consensus 91 if~qS~v~--~~~el~~~l~~~~~~~~l~R~~~~k~~~~~~~~~~~~g~~~YP~lQAaDil~--~---------~ad~vp 157 (346)
T 3n9i_A 91 IFVQSHVP--EHSQLSWALNCYTYFGELSRMTQFKDKSARYAENINAGLFDYPVLMAADILL--Y---------QTNQVP 157 (346)
T ss_dssp EEEGGGCT--HHHHHHHHHHTTSBHHHHHTCHHHHHHHHHSGGGCBHHHHHHHHHHHHHHHT--T---------TCSEEC
T ss_pred EEeccccc--cchHHHHHHHHHhhHHHHHHHHHHHHHHhccCCCCCchhHHhHHHHHHHHHH--h---------CceEEE
Confidence 99999996 4667777788888888887765442 46899999999999999997 3 699999
Q ss_pred ccCCCCCC
Q 025688 237 CAIDQVGS 244 (249)
Q Consensus 237 vg~DQdp~ 244 (249)
||+||+||
T Consensus 158 vG~DQ~~h 165 (346)
T 3n9i_A 158 VGEDQKQH 165 (346)
T ss_dssp CCGGGHHH
T ss_pred eccchHHH
Confidence 99999954
No 34
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae}
Probab=100.00 E-value=3e-34 Score=265.73 Aligned_cols=144 Identities=17% Similarity=0.171 Sum_probs=126.9
Q ss_pred CceEEEeccCCCCCCccchhhHHHH-hHHHHHHcCCCcEEEEecChhhhhccCCCHHHHHHHHHHHHHHHHHcCCCCCce
Q 025688 84 EKFYLYTGRGPSSEALHLGHLVPFM-FTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKT 162 (249)
Q Consensus 84 k~~~iYtG~dPSg~sLHlGHlv~~~-~l~~lQ~~g~~~v~i~IaD~~k~~~r~l~~e~i~~~~~eni~~iiA~G~dp~kt 162 (249)
.+.++||||+||| +||||||++++ .+++||+ + ..++++|||+|+++.+ .+++++++++++++++|+|+|+||+++
T Consensus 3 ~~~~i~sG~~PTG-~lHLGn~vg~l~~~~~lQ~-~-~~~~~~IaD~ha~~~~-~d~~~i~~~~~~~~~~~lA~Gldp~k~ 78 (348)
T 2yy5_A 3 MMKRALTGIQASG-KQHLGNYLGVMQSLIELQE-Q-CQLFVFVADLHSITVD-FQPQALKQNNFDLVRTLLAVGLDPQKA 78 (348)
T ss_dssp -CCEEEEEECCCT-TCBHHHHHHTGGGHHHHHH-H-SEEEEEECHHHHTTSC-CCHHHHHHHHHHHHHHHHHTTCCTTTE
T ss_pred CCeEEEEeeCCCC-cccHHHHHHHHHHHHHHHh-C-CcEEEEEcChhhccCC-CCHHHHHHHHHHHHHHHHHhCCChhHe
Confidence 4579999999998 99999999877 4666999 5 5799999999999875 899999999999999999999999999
Q ss_pred EEEEcCcCCCcccHHHHHHHhccCCHHHHHHhhCC-------------CCCCceeeeechHHhhhccCCcCCCcccCCCC
Q 025688 163 FIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGF-------------TGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKD 229 (249)
Q Consensus 163 ~i~~ns~~~~~~~~~~~l~l~k~~tv~~m~~~~gf-------------~~~~~ig~~~YP~lQaaDil~~~fp~~~~~~~ 229 (249)
.||.||+|. .+.++.|.+++.++++++.+..+| +++.++|+|+||+||||||+. |
T Consensus 79 ~if~qS~~~--~~~el~w~l~~~~~~~~l~R~~~~k~~~~~~~~~~~~~~~~~~g~~~YPvLQaaDil~--~-------- 146 (348)
T 2yy5_A 79 CLFLQSDLL--EHSMMGYLMMVQSNLGELQRMTQFKAKKAEQTRNPNGTLNIPTGLLTYPALMAGDILL--Y-------- 146 (348)
T ss_dssp EEEEGGGCH--HHHHHHHHHHHHSBHHHHHHCHHHHTTC-----------CCBTHHHHHHHHHHHHHHT--T--------
T ss_pred EEEECCccc--chhHHHHHHHhhccHHHHhchHHHHHHHHhhccccccCCCCChhhhhhHHHHHHHHHH--h--------
Confidence 999999995 478888999999999998886543 346799999999999999997 3
Q ss_pred CCCCcccccCCCCCC
Q 025688 230 HLRCLIPCAIDQVGS 244 (249)
Q Consensus 230 ~~~~lVPvg~DQdp~ 244 (249)
.+|+||||.||.||
T Consensus 147 -~a~~vpvG~DQ~~~ 160 (348)
T 2yy5_A 147 -QPDIVPVGNDQKQH 160 (348)
T ss_dssp -CCSEEECCGGGHHH
T ss_pred -CccEEEecccHHHH
Confidence 79999999999965
No 35
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A
Probab=100.00 E-value=2.7e-34 Score=264.12 Aligned_cols=141 Identities=18% Similarity=0.207 Sum_probs=126.2
Q ss_pred EEEeccCCCCCCccchhhHHHH-hHHHHHHcCCCcEEEEecChhhhhccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEE
Q 025688 87 YLYTGRGPSSEALHLGHLVPFM-FTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIF 165 (249)
Q Consensus 87 ~iYtG~dPSg~sLHlGHlv~~~-~l~~lQ~~g~~~v~i~IaD~~k~~~r~l~~e~i~~~~~eni~~iiA~G~dp~kt~i~ 165 (249)
++||||+||| +||||||++++ .+.+||+ | ..++++|||+|+++. +.+.+++++++++++++|+|||+||+++.||
T Consensus 3 ~vysG~~PTG-~lHlGn~vg~l~~~~~lQ~-g-~~~~~~IaD~ha~~~-~~~~e~i~~~~~~~~~~~la~Gldp~k~~if 78 (328)
T 1i6k_A 3 TIFSGIQPSG-VITIGNYIGALRQFVELQH-E-YNCYFCIVDQHAITV-WQDPHELRQNIRRLAALYLAVGIDPTQATLF 78 (328)
T ss_dssp EEEEEECCCS-CCBHHHHHHTHHHHHHHTT-T-SEEEEEECHHHHTTS-CCCHHHHHHHHHHHHHHHHHTTCCTTTEEEE
T ss_pred EEEEeeCCCC-cccHHHHHHHHHHHHHHHc-C-CcEEEEEeCceeecC-CCCHHHHHHHHHHHHHHHHHhCCChhhcEEE
Confidence 7999999998 99999999888 4666798 6 468999999999987 6899999999999999999999999999999
Q ss_pred EcCcCCCcccHHHHHHHhccCCHHHHHHhhCCC------CCCceeeeechHHhhhccCCcCCCcccCCCCCCCCcccccC
Q 025688 166 SDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFT------GEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAI 239 (249)
Q Consensus 166 ~ns~~~~~~~~~~~l~l~k~~tv~~m~~~~gf~------~~~~ig~~~YP~lQaaDil~~~fp~~~~~~~~~~~lVPvg~ 239 (249)
.||+|. .+.++.|.+++..+++++.+..+|+ ++.++|+|+||+||||||+. | .+|+||||+
T Consensus 79 ~qS~~~--~~~~l~w~l~~~~~~~~l~r~~~~k~~~~~~~~~~~g~f~YPvLQaaDil~--~---------~~~~vpvG~ 145 (328)
T 1i6k_A 79 IQSEVP--AHAQAAWMLQCIVYIGELERMTQFKEKSAGKEAVSAGLLTYPPLMAADILL--Y---------NTDIVPVGE 145 (328)
T ss_dssp EGGGCT--HHHHHHHHHHHHSCHHHHHTCHHHHHHHTTCSSCCHHHHTHHHHHHHHHHT--T---------TCSEEECCG
T ss_pred ecCchh--hhhHHHHHHhccccHHHHHHHHHHHHHHhccCCCCchhhccHHHHHHHHHH--h---------CCCEEeccc
Confidence 999995 4788889999999999888776543 46899999999999999997 3 699999999
Q ss_pred CCCCC
Q 025688 240 DQVGS 244 (249)
Q Consensus 240 DQdp~ 244 (249)
||.||
T Consensus 146 DQ~~~ 150 (328)
T 1i6k_A 146 DQKQH 150 (328)
T ss_dssp GGHHH
T ss_pred chHHH
Confidence 99964
No 36
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=99.95 E-value=2.4e-28 Score=243.11 Aligned_cols=150 Identities=11% Similarity=0.068 Sum_probs=130.2
Q ss_pred CCceEEEeccCCCCCCccchhhHHHHh-HHH-HHHcCCCcEEEEecChhhhhccC--CCHHHHHHHHHHHHHHHHHcCCC
Q 025688 83 GEKFYLYTGRGPSSEALHLGHLVPFMF-TKY-LQDAFKVPLVIQLTDDEKCMWKN--LSVEESQRLARENAKDIIACGFD 158 (249)
Q Consensus 83 ~k~~~iYtG~dPSg~sLHlGHlv~~~~-l~~-lQ~~g~~~v~i~IaD~~k~~~r~--l~~e~i~~~~~eni~~iiA~G~d 158 (249)
..+..++ ..||.++|||||++++++ ++. +|.+++++++|+|||+||++.++ .++|++++++.+|+++|+|+|+|
T Consensus 380 ~~~l~~~--~~ps~g~lHLGh~v~~~k~l~~~~~~~~g~~v~ilIaD~~A~i~d~~g~~~e~i~~~~~y~~~~~~alG~d 457 (690)
T 3p0j_A 380 AKPHACM--WMPALLKVPLDVAEGMIKVTKDFIAAHPEGTVTLVLPDWSAVASDEITGVEKDISAALQVNCALLKAYGLP 457 (690)
T ss_dssp SSCEEEE--ECCCCSSCBHHHHHHHHHHHHHHHHHCSSCEEEEEECTTHHHHTTCTTCCHHHHHHHHHHHHHHHHHHTCC
T ss_pred CCcceEE--ecCCCCCcccchHHHHHHHHHHHHHHcCCCeEEEEEecchhhhCCCCCCCHHHHHHHHHHHHHHHHhcCCC
Confidence 3456666 444555999999999999 665 55556689999999999998877 89999999999999999999999
Q ss_pred CCceEEEEcCcCCCc---ccHHHHHHHhccCCHHHHHHhhCCCCCCceeeeechHHhhhccCCcCCCcccCCCCCCCCcc
Q 025688 159 VTKTFIFSDFDYVGG---AFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLI 235 (249)
Q Consensus 159 p~kt~i~~ns~~~~~---~~~~~~l~l~k~~tv~~m~~~~gf~~~~~ig~~~YP~lQaaDil~~~fp~~~~~~~~~~~lV 235 (249)
| ++.|+.||+|+.. .+|.+++++++++|+++|+++++ ++++++|+|.||+|||||||+ + +++++
T Consensus 458 ~-k~~fv~~S~~~~~~~~~~~~~vi~la~~~tl~r~~~~~~-~~~~~i~~~~YPlmQaaDi~~------l-----~aDi~ 524 (690)
T 3p0j_A 458 S-SVKIVTENEVILGNCDDFWVSVIGIARKNLLSHVEELYG-GEVRNAGQVIAALMRVATALM------L-----SVSHV 524 (690)
T ss_dssp T-TSEEEEHHHHHHHTHHHHHHHHHHHHTTSCHHHHHHHTT-SCCSSHHHHHHHHHHHHHHHH------T-----TCSEE
T ss_pred c-CeEEEECCchhccchhhHHHHHHHHHHhhhHHHHHHHhC-CCCcchHHHHHHHHHHhhhhc------c-----CCCEE
Confidence 8 7999999999754 59999999999999999999997 678899999999999999997 2 58899
Q ss_pred cccCCCCCCCcccC
Q 025688 236 PCAIDQVGSPFFLV 249 (249)
Q Consensus 236 Pvg~DQdp~~~~~~ 249 (249)
|||+||+ |||+|
T Consensus 525 ~gG~DQ~--~~~~L 536 (690)
T 3p0j_A 525 ISTSLDG--HINAF 536 (690)
T ss_dssp EECSTTT--TTTHH
T ss_pred ecccccH--HHHHH
Confidence 9999999 77753
No 37
>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A*
Probab=96.07 E-value=0.011 Score=53.08 Aligned_cols=89 Identities=15% Similarity=0.201 Sum_probs=54.9
Q ss_pred CCCCCCccchhhHHHHhHHHH--HHcCCCcEEEEecChhhhhccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEEcCcC
Q 025688 93 GPSSEALHLGHLVPFMFTKYL--QDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDY 170 (249)
Q Consensus 93 dPSg~sLHlGHlv~~~~l~~l--Q~~g~~~v~i~IaD~~k~~~r~l~~e~i~~~~~eni~~iiA~G~dp~kt~i~~ns~~ 170 (249)
.||| .|||||+..++. .|+ +..+ ...++-|.|-... | .. .++.....+++.++|++++.. ++.||+.
T Consensus 13 sPtG-~LHiG~~rtal~-n~l~Ar~~~-g~~ilRieDtD~~--R-~~----~~~~~~I~~dL~~LGl~~D~~-~~~qSer 81 (298)
T 1nzj_A 13 SPSG-ELHFGSLIAALG-SYLQARARQ-GRWLVRIEDIDPP--R-EV----PGAAETILRQLEHYGLHWDGD-VLWQSQR 81 (298)
T ss_dssp CTTS-CCCHHHHHHHHH-HHHHHHHTT-CEEEEEECCSCGG--G-SC----TTHHHHHHHHHHHTTCCCSSC-CEEGGGC
T ss_pred CCCC-CccHHHHHHHHH-HHHHHHhcC-CeEEEEEecCCch--h-hH----HHHHHHHHHHHHHcCCCCCCC-CeeeeCC
Confidence 6898 999999999985 443 3333 4666678885421 1 11 233336677888999998764 6889996
Q ss_pred CCcccHHHHHHH-------hccCCHHHHHH
Q 025688 171 VGGAFYKNMVKV-------AKCVTYNKVVG 193 (249)
Q Consensus 171 ~~~~~~~~~l~l-------~k~~tv~~m~~ 193 (249)
.. .+...+-++ ....|-.++++
T Consensus 82 ~~-~y~~~~~~L~~~G~aY~c~ct~~~l~~ 110 (298)
T 1nzj_A 82 HD-AYREALAWLHEQGLSYYCTCTRARIQS 110 (298)
T ss_dssp HH-HHHHHHHHHHHTTCEEEECCCHHHHHH
T ss_pred HH-HHHHHHHHHHHcCCcccCcCCHHHHHH
Confidence 53 333322222 23456666665
No 38
>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A
Probab=94.69 E-value=0.025 Score=53.91 Aligned_cols=70 Identities=9% Similarity=0.198 Sum_probs=46.2
Q ss_pred CCCCCCccchhhHHHHhH-HHHHHcCCCcEEEEecChhhhhccCCCHHHHHHHHHHHHHHHHHcCCCCCceE-------E
Q 025688 93 GPSSEALHLGHLVPFMFT-KYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTF-------I 164 (249)
Q Consensus 93 dPSg~sLHlGHlv~~~~l-~~lQ~~g~~~v~i~IaD~~k~~~r~l~~e~i~~~~~eni~~iiA~G~dp~kt~-------i 164 (249)
.||| .|||||+..+++. .+.+..| ...++-|-|.-.- | -..+-+. ..+.++..+|++++... .
T Consensus 9 sPtG-~LHiG~~rtal~n~l~Ar~~~-G~filRieDtD~~--R-~~~~~~~----~I~~dl~wlGl~wd~~~~~gG~~gp 79 (468)
T 1j09_A 9 SPTG-DPHVGTAYIALFNYAWARRNG-GRFIVRIEDTDRA--R-YVPGAEE----RILAALKWLGLSYDEGPDVGGPHGP 79 (468)
T ss_dssp CCSS-SCBHHHHHHHHHHHHHHHHTT-CEEEECBCCCCTT--S-CCTTHHH----HHHHHHHHTTCCCSBBTTTBCTTCC
T ss_pred CCCC-CccHHHHHHHHHHHHHHHHcC-CEEEEEeCcCCCc--c-cChHHHH----HHHHHHHHcCCCCCCCCCCCCCCCC
Confidence 5898 9999999999863 2334444 4566668776421 1 1222222 56677888999987653 4
Q ss_pred EEcCcCC
Q 025688 165 FSDFDYV 171 (249)
Q Consensus 165 ~~ns~~~ 171 (249)
+.||+..
T Consensus 80 ~~QS~r~ 86 (468)
T 1j09_A 80 YRQSERL 86 (468)
T ss_dssp CBGGGCH
T ss_pred eeccCCH
Confidence 7899875
No 39
>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis}
Probab=94.65 E-value=0.091 Score=50.33 Aligned_cols=78 Identities=13% Similarity=0.213 Sum_probs=49.3
Q ss_pred ceEEEeccCCCCCCccchhhHHHHhHHHHHHcCCCcEEEEecChhhhhccCCCHHHHHHHHHHHHHHHHHcCCCCCceEE
Q 025688 85 KFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFI 164 (249)
Q Consensus 85 ~~~iYtG~dPSg~sLHlGHlv~~~~l~~lQ~~g~~~v~i~IaD~~k~~~r~l~~e~i~~~~~eni~~iiA~G~dp~kt~i 164 (249)
+++.=-.=-||| .|||||+..++..-.+.+..+...++-|-|--.- | ... ++......++..+|++++.. .
T Consensus 25 ~v~~RFAPSPTG-~lHiG~~rtal~n~l~Ar~~~G~filRieDtD~~--R-~~~----~~~~~i~~dl~wlGl~~d~~-~ 95 (490)
T 4g6z_A 25 PVRTRFAPSPTG-FIHLGNIRSALYPWAFARKMKGTFVLRIEDTDVE--R-SSQ----EAVDAILEGMAWLGLDYDEG-P 95 (490)
T ss_dssp CCEEEECCCCCS-CCBHHHHHHHHHHHHHHHHTTCEEEEEECCCCGG--G-CCH----HHHHHHHHHHHHTTCCCSEE-E
T ss_pred CceEEeCCCCCC-CccHHHHHHHHHHHHHHHhcCCeEEEEeCCCCcc--c-ccH----HHHHHHHHHHHHcCCCCCCC-C
Confidence 444444557888 8999999988863223333334566667664321 1 222 33346777888899999753 6
Q ss_pred EEcCcCC
Q 025688 165 FSDFDYV 171 (249)
Q Consensus 165 ~~ns~~~ 171 (249)
+.||+.+
T Consensus 96 ~~qS~r~ 102 (490)
T 4g6z_A 96 YYQMQRM 102 (490)
T ss_dssp EEGGGCH
T ss_pred cccccCH
Confidence 8899975
No 40
>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima}
Probab=94.62 E-value=0.034 Score=54.44 Aligned_cols=79 Identities=15% Similarity=0.216 Sum_probs=50.3
Q ss_pred ceEEEeccCCCCCCccchhhHHHHhHHHHHHcCCCcEEEEecChhhhhccCCCHHHHHHHHHHHHHHHHHcCCCCCce--
Q 025688 85 KFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKT-- 162 (249)
Q Consensus 85 ~~~iYtG~dPSg~sLHlGHlv~~~~l~~lQ~~g~~~v~i~IaD~~k~~~r~l~~e~i~~~~~eni~~iiA~G~dp~kt-- 162 (249)
++++=-.=-||| .|||||+..+++.--+.+..+..+++-|.|.-.- | ...+-+. ....++..+|++++..
T Consensus 129 ~v~~RFaPsPTG-~LHiG~artAl~n~l~Ar~~~G~~ilRieDtD~~--r-~~~~~~~----~I~~dL~wlGl~~D~~~~ 200 (592)
T 3al0_C 129 LVRVRFAPSPTG-HLHVGGARTALFNWMFARKEGGKFILRIEDTDTE--R-SSREYEQ----QILESLRWCGLDWDEGPD 200 (592)
T ss_dssp CCEEEECCCSSS-CCBHHHHHHHHHHHHHHHHHTCEEEECBCCCCSS--S-CCHHHHH----HHHHHHHHTTCCCSBBTT
T ss_pred eEEEEECCCCCC-CccHHHHHHHHHHHHHHHhcCCcEEEEecCcChh--h-ccHHHHH----HHHHHHHHcCCCCCCCCC
Confidence 344444478898 9999999988863223333335677778884411 1 2222233 5667788899998764
Q ss_pred -----EEEEcCcCC
Q 025688 163 -----FIFSDFDYV 171 (249)
Q Consensus 163 -----~i~~ns~~~ 171 (249)
-.+.||+..
T Consensus 201 ~gG~~gp~~qSer~ 214 (592)
T 3al0_C 201 IGGDFGPYRQSERL 214 (592)
T ss_dssp TBCTTCCCBSTTCH
T ss_pred cCCCCCCeeeeCCH
Confidence 257898865
No 41
>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus}
Probab=94.50 E-value=0.11 Score=49.85 Aligned_cols=71 Identities=13% Similarity=0.222 Sum_probs=47.8
Q ss_pred cCCCCCCccchhhHHHHhHHHH-HHcCCCcEEEEecChhhhhccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEEcCcC
Q 025688 92 RGPSSEALHLGHLVPFMFTKYL-QDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDY 170 (249)
Q Consensus 92 ~dPSg~sLHlGHlv~~~~l~~l-Q~~g~~~v~i~IaD~~k~~~r~l~~e~i~~~~~eni~~iiA~G~dp~kt~i~~ns~~ 170 (249)
=-||| .|||||+..+++ .|+ .+..+...++-|.|.-. .| ... ++....+.++..+|++++. ..+.||+.
T Consensus 8 PSPtG-~lHiG~artal~-n~l~Ar~~~G~filRieDtD~--~R-~~~----~~~~~i~~dL~wLGl~wde-~~~~QS~r 77 (492)
T 2cfo_A 8 PSPTG-NLHIGTARTAVF-NWLYARHRGGKFILRIEDTDR--ER-SRP----EYTENILEGLQWLGLTWDE-GPYFQSDR 77 (492)
T ss_dssp CCTTS-CCBHHHHHHHHH-HHHHHHHTTCEEEEEECCCSS--SS-CCH----HHHHHHHHHHHHTTCCCSE-EEEEGGGC
T ss_pred CCCCC-CccHHHHHHHHH-HHHHHHhcCCeEEEEEeeCCc--cc-cch----HHHHHHHHHHHHcCCCCCC-CCccccCC
Confidence 36898 999999999886 343 23333567777888652 11 222 3333667788889999875 36889997
Q ss_pred CC
Q 025688 171 VG 172 (249)
Q Consensus 171 ~~ 172 (249)
+.
T Consensus 78 ~~ 79 (492)
T 2cfo_A 78 LD 79 (492)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 42
>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B*
Probab=94.47 E-value=0.052 Score=51.93 Aligned_cols=78 Identities=15% Similarity=0.254 Sum_probs=50.7
Q ss_pred ceEEEeccCCCCCCccchhhHHHHhH-HHHHHcCCCcEEEEecChhhhhccCCCHHHHHHHHHHHHHHHHHcCCCCCceE
Q 025688 85 KFYLYTGRGPSSEALHLGHLVPFMFT-KYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTF 163 (249)
Q Consensus 85 ~~~iYtG~dPSg~sLHlGHlv~~~~l-~~lQ~~g~~~v~i~IaD~~k~~~r~l~~e~i~~~~~eni~~iiA~G~dp~kt~ 163 (249)
+++.=-.=.||| .|||||+..+++. .+.+..| ..+++-|-|.-.. | ...+-+. ...+++..+|++++...
T Consensus 25 ~v~~RFAPsPtG-~LHiG~~rtal~n~l~Ar~~~-G~filRieDtD~~--R-~~~~~~~----~I~~dL~wlGl~wDe~~ 95 (488)
T 3afh_A 25 LVRVRFAPSPTG-HLHVGGARTALFNWMFARKEG-GKFILRIEDTDTE--R-SSREYEQ----QILESLRWCGLDWDEGP 95 (488)
T ss_dssp CCEEEECCCCSS-SCBHHHHHHHHHHHHHHHHHT-CEEEECBCCCCTT--T-CCHHHHH----HHHHHHHHTTCCCSBBT
T ss_pred CceEEECCCCCC-CccHHHHHHHHHHHHHHHHcC-CEEEEEEeeCCcc--c-ccHHHHH----HHHHHHHHcCCCCCcCC
Confidence 444445567898 9999999998863 2334444 4567778776421 1 2233333 56677888999987642
Q ss_pred -------EEEcCcCC
Q 025688 164 -------IFSDFDYV 171 (249)
Q Consensus 164 -------i~~ns~~~ 171 (249)
.+.||+..
T Consensus 96 ~~gG~~gp~~QSer~ 110 (488)
T 3afh_A 96 DIGGDFGPYRQSERL 110 (488)
T ss_dssp TTBCTTCCCBGGGCH
T ss_pred CCCCCCCCeeeeCCH
Confidence 57899865
No 43
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=94.45 E-value=0.074 Score=51.65 Aligned_cols=86 Identities=16% Similarity=0.250 Sum_probs=53.9
Q ss_pred ceEEEeccCCCCCCccchhhHHHHhHHHHHHcCCCcEEEEecChhhhhccCCCHHHHHHHHHHHHHHHHHcCCCCCceEE
Q 025688 85 KFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFI 164 (249)
Q Consensus 85 ~~~iYtG~dPSg~sLHlGHlv~~~~l~~lQ~~g~~~v~i~IaD~~k~~~r~l~~e~i~~~~~eni~~iiA~G~dp~kt~i 164 (249)
+++.=-.=.||| .|||||+-.++..-.+.+..+..+++-|.|--.. | ... ++.....+++..+|++++ .+
T Consensus 96 ~v~tRFaPsPtG-~LHIGhaRtal~n~l~Ar~~~G~~iLRieDtD~~--R-~~~----e~~~~I~edL~wLGl~wd--~~ 165 (553)
T 3aii_A 96 EVVLRFAPNPSG-PLHIGHARAAILNHEYARKYDGRLILRIEDTDPR--R-VDP----EAYDMIPADLEWLGVEWD--ET 165 (553)
T ss_dssp CCEEEECCCSSS-SCBHHHHHHHHHHHHHHHHTTCEEEEEECCCCGG--G-CCT----THHHHHHHHHHHHTCCCS--EE
T ss_pred ceEEEeCCCCCC-CccHHHHHHHHHHHHHHHHcCCEEEEEECcCCcc--c-ccH----HHHHHHHHHHHHcCCCCC--CC
Confidence 344333446788 9999999998863223444445666668775421 1 112 333366678888999996 57
Q ss_pred EEcCcCCCcccHHHHHH
Q 025688 165 FSDFDYVGGAFYKNMVK 181 (249)
Q Consensus 165 ~~ns~~~~~~~~~~~l~ 181 (249)
+.||+.+. .++..+-+
T Consensus 166 ~~qSdr~~-~y~~~~~~ 181 (553)
T 3aii_A 166 VIQSDRME-TYYEYTEK 181 (553)
T ss_dssp EEGGGGHH-HHHHHHHH
T ss_pred cccccCHH-HHHHHHHH
Confidence 99999864 55544443
No 44
>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A
Probab=93.95 E-value=0.054 Score=51.95 Aligned_cols=70 Identities=16% Similarity=0.192 Sum_probs=46.5
Q ss_pred CCCCCCccchhhHHHHhH-HHHHHcCCCcEEEEecChhhhhccCCCHHHHHHHHHHHHHHHHHcCCCCCce-------EE
Q 025688 93 GPSSEALHLGHLVPFMFT-KYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKT-------FI 164 (249)
Q Consensus 93 dPSg~sLHlGHlv~~~~l-~~lQ~~g~~~v~i~IaD~~k~~~r~l~~e~i~~~~~eni~~iiA~G~dp~kt-------~i 164 (249)
.||| .|||||+..+++. .+.+..| ...++-|-|.-.- | ...+-.. ..+.++..+|++++.- .+
T Consensus 14 sPTG-~LHiG~~rtAL~n~l~Ar~~g-G~fiLRieDtD~~--R-~~~~~~~----~I~~~L~wlGl~wDegp~~gG~~~~ 84 (498)
T 2ja2_A 14 SPTG-TPHVGLVRTALFNWAYARHTG-GTFVFRIEDTDAQ--R-DSEESYL----ALLDALRWLGLDWDEGPEVGGPYGP 84 (498)
T ss_dssp CSSS-SCBHHHHHHHHHHHHHHHHHT-CEEEECBCCCCTT--T-CCHHHHH----HHHHHHHHHTCCCSBBTTTBCTTCC
T ss_pred CCCC-CccHHHHHHHHHHHHHHHHcC-CEEEEEECcCCCc--c-cChHHHH----HHHHHHHHcCCCcCCCcCcCCCCCC
Confidence 6898 9999999998863 3345555 3455558776421 1 2222233 5667788899998763 47
Q ss_pred EEcCcCC
Q 025688 165 FSDFDYV 171 (249)
Q Consensus 165 ~~ns~~~ 171 (249)
+.||+..
T Consensus 85 ~~QS~r~ 91 (498)
T 2ja2_A 85 YRQSQRA 91 (498)
T ss_dssp CBGGGCH
T ss_pred eeeecCH
Confidence 8899975
No 45
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A
Probab=93.45 E-value=0.3 Score=47.45 Aligned_cols=94 Identities=15% Similarity=0.219 Sum_probs=58.1
Q ss_pred HHHHcCC--ceEEEeccCCCCCCccchhhHHHHhHHHHHHcCCCcEEEEecChhhhhccCCCHHHHHHHHHHHHHHHHHc
Q 025688 78 DAYEKGE--KFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIAC 155 (249)
Q Consensus 78 ~~~e~~k--~~~iYtG~dPSg~sLHlGHlv~~~~l~~lQ~~g~~~v~i~IaD~~k~~~r~l~~e~i~~~~~eni~~iiA~ 155 (249)
+.+++|+ +++.=-+=.||| .|||||+-.++..--+.+..+..+++-|.|--.- | ... ++......++..+
T Consensus 17 ~dl~~~~~~~v~tRFaPSPtG-~LHIGhaRtal~n~l~Ar~~gG~fiLRieDTD~~--R-~~~----e~~~~I~edL~wL 88 (553)
T 1qtq_A 17 EDLASGKHTTVHTRFPPEPNG-YLHIGHAKSICLNFGIAQDYKGQCNLRFDDTNPV--K-EDI----EYVESIKNDVEWL 88 (553)
T ss_dssp HHHHHTSCSSCEEEECCCTTS-CCBHHHHHHHHHHHHHHHHTTCEEEEEECCCCGG--G-CCH----HHHHHHHHHHHHT
T ss_pred hHhhcCCcCceEEEeCCCCCC-CccHHHHHHHHHHHHHHHHcCCEEEEEECCCCch--h-cCH----HHHHHHHHHHHHc
Confidence 3344443 455555777898 9999999988863223333445666668775421 1 233 3333667778889
Q ss_pred CCCCCceEEEEcCcCCCcccHHHHHH
Q 025688 156 GFDVTKTFIFSDFDYVGGAFYKNMVK 181 (249)
Q Consensus 156 G~dp~kt~i~~ns~~~~~~~~~~~l~ 181 (249)
|++++. .++.||+.+. .++..+.+
T Consensus 89 Gl~wde-~~~~qSer~~-~~~~~a~~ 112 (553)
T 1qtq_A 89 GFHWSG-NVRYSSDYFD-QLHAYAIE 112 (553)
T ss_dssp TCCCSS-SCEEGGGGHH-HHHHHHHH
T ss_pred CCCCCC-CCeehcccHH-HHHHHHHH
Confidence 999843 2588998763 45555544
No 46
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1
Probab=93.27 E-value=0.1 Score=49.97 Aligned_cols=44 Identities=25% Similarity=0.307 Sum_probs=30.7
Q ss_pred ceEEEeccCCCCCCccchhhHHHHh----HHHHHHcCCCcEEEEecChh
Q 025688 85 KFYLYTGRGPSSEALHLGHLVPFMF----TKYLQDAFKVPLVIQLTDDE 129 (249)
Q Consensus 85 ~~~iYtG~dPSg~sLHlGHlv~~~~----l~~lQ~~g~~~v~i~IaD~~ 129 (249)
.+.+.||--||| .+||||+-..+. .+||...|+...+++-.|++
T Consensus 21 ~yv~~tgPsPtG-~lHIGhaR~al~~D~laR~l~~~g~~v~fi~~idD~ 68 (523)
T 1irx_A 21 KYVVESGITPSG-YVHVGNFRELFTAYIVGHALRDKGYEVRHIHMWDDY 68 (523)
T ss_dssp EEEEEEEECCSS-CCCHHHHHHHHHHHHHHHHHHTTTCEEEEEEEECTT
T ss_pred eEEECCCCCCCC-CcccCCcHHHHHHHHHHHHHHHcCCCEEEEEeeCCc
Confidence 466667999999 999999876653 35676667555555534444
No 47
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*
Probab=93.00 E-value=0.23 Score=47.24 Aligned_cols=79 Identities=18% Similarity=0.193 Sum_probs=47.0
Q ss_pred HHcCCceEEEec-cCCCCCCccchhhHHHH---h-HHHHHHcCCCcEEEEecChh---hhhc----cCCCHHH-HHHHHH
Q 025688 80 YEKGEKFYLYTG-RGPSSEALHLGHLVPFM---F-TKYLQDAFKVPLVIQLTDDE---KCMW----KNLSVEE-SQRLAR 146 (249)
Q Consensus 80 ~e~~k~~~iYtG-~dPSg~sLHlGHlv~~~---~-l~~lQ~~g~~~v~i~IaD~~---k~~~----r~l~~e~-i~~~~~ 146 (249)
+++.|+|+|=|. --++| .+||||+.+.. . .||+.-.| ..|..+-|.++ +... ...+.++ +.++..
T Consensus 5 ~~~~k~f~Ittp~pY~nG-~lHiGHa~~~~~~Dii~Ry~r~~G-~~v~~v~G~D~hG~~ie~~a~k~g~~~~e~~~~~~~ 82 (542)
T 3u1f_A 5 MKVEKVFFVTSPIYYVNA-APHIGHVYSTLITDVIGRYHRVKG-ERVFALTGTDEHGQKVAEAAKQKQVSPYDFTTAVAG 82 (542)
T ss_dssp --CCCCEEEEEEEEECSS-CCCHHHHHHHHHHHHHHHHHHHTT-CCEEEEEEEECCSHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred CCCCCCEEEeCCCCCCCC-chhhHHHHHHHHHHHHHHHHHhcC-CCccccCccCcChHHHHHHHHHcCCCHHHHHHHHHH
Confidence 345677777776 46788 99999988764 2 34555556 45555544444 4322 2256544 444555
Q ss_pred HHHHHHHHcCCCCC
Q 025688 147 ENAKDIIACGFDVT 160 (249)
Q Consensus 147 eni~~iiA~G~dp~ 160 (249)
+..+++.++|++.+
T Consensus 83 ~~~~~~~~lgi~~D 96 (542)
T 3u1f_A 83 EFKKCFEQMDYSID 96 (542)
T ss_dssp HHHHHHHHHTCCCS
T ss_pred HHHHHHHHhCCccC
Confidence 55566777898765
No 48
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans}
Probab=92.98 E-value=0.24 Score=50.38 Aligned_cols=94 Identities=17% Similarity=0.251 Sum_probs=58.2
Q ss_pred HHHHcCC--ceEEEeccCCCCCCccchhhHHHHhHHHHHHcCCCcEEEEecChhhhhccCCCHHHHHHHHHHHHHHHHHc
Q 025688 78 DAYEKGE--KFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIAC 155 (249)
Q Consensus 78 ~~~e~~k--~~~iYtG~dPSg~sLHlGHlv~~~~l~~lQ~~g~~~v~i~IaD~~k~~~r~l~~e~i~~~~~eni~~iiA~ 155 (249)
+.+++|+ +++.=-+=.||| .|||||+-.++..-.+.+..+..+++-|.|--.. | ... ++......++..+
T Consensus 57 ~dl~~g~~~~v~tRFaPSPtG-~LHIGhARtAL~n~l~Ar~~gG~fiLRIEDTD~~--R-~~~----e~~~~IledL~wL 128 (851)
T 2hz7_A 57 RDLEAGKYPRVVTRFPPDPSG-YAHLGHVFASLLDFNTARQYGGQFNLRMDDTNPE--L-ARQ----EYVDSIADDLKWL 128 (851)
T ss_dssp HHHHTTSCSSCEEEECCCSSS-CCBHHHHHHHHHHHHHHHHTTCEEEEEECCCCTT--T-CCH----HHHHHHHHHHHHH
T ss_pred HHhhcCCcCceEEEeCCCCCC-CccHHHHHHHHHHHHHHHHcCCEEEEEECcCCcc--c-ccH----HHHHHHHHHHHHc
Confidence 4455554 333334778898 9999999988863223344445666778775421 1 222 3333667778889
Q ss_pred CCCCCceEEEEcCcCCCcccHHHHHH
Q 025688 156 GFDVTKTFIFSDFDYVGGAFYKNMVK 181 (249)
Q Consensus 156 G~dp~kt~i~~ns~~~~~~~~~~~l~ 181 (249)
|++++. .++.||+.+. .++..+-+
T Consensus 129 Gl~wde-~~~~qSer~d-~y~e~a~~ 152 (851)
T 2hz7_A 129 GLDWGE-HFYYASDYFD-RYYAYAEQ 152 (851)
T ss_dssp TCCCTT-CEEEGGGGHH-HHHHHHHH
T ss_pred CCCCCC-CcccHhhhHH-HHHHHHHH
Confidence 999843 3688999864 55554443
No 49
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=92.67 E-value=0.34 Score=46.53 Aligned_cols=78 Identities=15% Similarity=0.237 Sum_probs=46.1
Q ss_pred CCceEEEec-cCCCCCCccchhhHHHHh----HHHHHHcCCCcEEEEecChh--hhhc----cCCCHHHHH-HHHHHHHH
Q 025688 83 GEKFYLYTG-RGPSSEALHLGHLVPFMF----TKYLQDAFKVPLVIQLTDDE--KCMW----KNLSVEESQ-RLARENAK 150 (249)
Q Consensus 83 ~k~~~iYtG-~dPSg~sLHlGHlv~~~~----l~~lQ~~g~~~v~i~IaD~~--k~~~----r~l~~e~i~-~~~~eni~ 150 (249)
++++++-++ --||| .+||||+...+. .|++...|....++.-.|.| +... ...+.+++. ++..+..+
T Consensus 17 ~~~~~v~~~~py~ng-~lHiGH~r~~v~~D~laR~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~ 95 (560)
T 3h99_A 17 AKKILVTCASPYANG-SIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQLGITPEQMIGEMSQEHQT 95 (560)
T ss_dssp CCEEEEEECCCBTTS-CCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCcEEEeCCCCCCCC-CcchhhHHHHHHHHHHHHHHHHcCCeEEEeeeecCcCcHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 345555555 44558 899999886642 45566667555555555655 2221 125655443 34445556
Q ss_pred HHHHcCCCCCc
Q 025688 151 DIIACGFDVTK 161 (249)
Q Consensus 151 ~iiA~G~dp~k 161 (249)
++.++|++.+.
T Consensus 96 ~~~~lgi~~d~ 106 (560)
T 3h99_A 96 DFAGFNISYDN 106 (560)
T ss_dssp HHHHTTCCCSE
T ss_pred HHHHcCCCCCC
Confidence 67779998763
No 50
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}
Probab=91.64 E-value=0.0085 Score=56.90 Aligned_cols=23 Identities=30% Similarity=0.481 Sum_probs=17.0
Q ss_pred CcccCCCC---CCCCcccccCCCCCC
Q 025688 222 PHLFSGKD---HLRCLIPCAIDQVGS 244 (249)
Q Consensus 222 p~~~~~~~---~~~~lVPvg~DQdp~ 244 (249)
|++|++++ +.+|+||||+||+||
T Consensus 275 ~~~~~~~~~~~~~~~~VPvG~DQ~~h 300 (451)
T 3foc_A 275 EELFPDSKRYQKAMCLIASGIEQDPY 300 (451)
T ss_dssp HHHCGGGGGBCCCEEEEEECTTTHHH
T ss_pred hhhcccccccccccceeeeecchHHH
Confidence 55565433 379999999999954
No 51
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Probab=89.61 E-value=1.4 Score=41.92 Aligned_cols=76 Identities=14% Similarity=0.157 Sum_probs=44.3
Q ss_pred CCceEEEeccCC--CCCCccchhhHHHHh----HHHHHHcCCCcEEEEecChh--hhhc----cCCCHHHHH-HHHHHHH
Q 025688 83 GEKFYLYTGRGP--SSEALHLGHLVPFMF----TKYLQDAFKVPLVIQLTDDE--KCMW----KNLSVEESQ-RLARENA 149 (249)
Q Consensus 83 ~k~~~iYtG~dP--Sg~sLHlGHlv~~~~----l~~lQ~~g~~~v~i~IaD~~--k~~~----r~l~~e~i~-~~~~eni 149 (249)
++++++ ||--| || .+||||+.+.+. .|++...|+...++.-.|.| +... ...+++++. ++..+..
T Consensus 24 ~~~~~i-~~p~pypng-~lHiGH~r~~v~~D~laR~lr~~G~~V~~~~g~dd~g~ki~~~a~~~g~~~~~~~~~~~~~~~ 101 (536)
T 4dlp_A 24 REKYYI-TTAIAYPNG-KPHIGHAYELIATDAMARFQRLNGMDVYFLTGTDEHGIKMLQSARKEGITPRDLADRNTSAFR 101 (536)
T ss_dssp CCEEEE-EECCBCCSS-CCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCEEE-eCCCCCCCC-CcCcchhHHHHHHHHHHHHHHhcCCcEEEecCcCCcchHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 344544 55554 57 899999876653 45566667555555555555 3221 125555443 3334555
Q ss_pred HHHHHcCCCCC
Q 025688 150 KDIIACGFDVT 160 (249)
Q Consensus 150 ~~iiA~G~dp~ 160 (249)
+++.++|+..+
T Consensus 102 ~~l~~lgi~~d 112 (536)
T 4dlp_A 102 RMAEVLNSSND 112 (536)
T ss_dssp HHHHHTTCCCS
T ss_pred HHHHHcCCCCC
Confidence 66777899876
No 52
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B
Probab=88.98 E-value=1.1 Score=42.23 Aligned_cols=74 Identities=22% Similarity=0.164 Sum_probs=43.6
Q ss_pred ceEEE-eccCCCCCCccchhhHHHHh----HHHHHHcCCCcEEEE-ecChh-hhhc----cCCCHHHHHH-HHHHHHHHH
Q 025688 85 KFYLY-TGRGPSSEALHLGHLVPFMF----TKYLQDAFKVPLVIQ-LTDDE-KCMW----KNLSVEESQR-LARENAKDI 152 (249)
Q Consensus 85 ~~~iY-tG~dPSg~sLHlGHlv~~~~----l~~lQ~~g~~~v~i~-IaD~~-k~~~----r~l~~e~i~~-~~~eni~~i 152 (249)
++.+| ||--|.+ .+||||+-+.+. .|++...|+...++. ++|.- |... ...++.++.+ +..+..+++
T Consensus 22 ~v~~yv~gPt~y~-~~HiGHar~~v~~D~l~R~lr~~G~~V~~v~~~tD~d~ki~~~A~~~g~~~~~~~~~~~~~f~~~~ 100 (461)
T 1li5_A 22 EVGMYVCGITVYD-LCHIGHGRTFVAFDVVARYLRFLGYKLKYVRNITDIDDKIIKRANENGESFVAMVDRMIAEMHKDF 100 (461)
T ss_dssp EEEEEECCCBSSS-CCBHHHHHHHHHHHHHHHHHHHHTCEEEEEECBBCCSHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred CeeEEEcCCcCCC-CCcccccHHHHHHHHHHHHHHHcCCCEEEeecCCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 34444 5555557 999999876542 455666675444444 56654 4322 1255555443 444566777
Q ss_pred HHcCCCC
Q 025688 153 IACGFDV 159 (249)
Q Consensus 153 iA~G~dp 159 (249)
.++|+.+
T Consensus 101 ~~LgI~~ 107 (461)
T 1li5_A 101 DALNILR 107 (461)
T ss_dssp HHTTCCC
T ss_pred HHcCCCC
Confidence 7899875
No 53
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A*
Probab=88.54 E-value=1.3 Score=41.75 Aligned_cols=80 Identities=21% Similarity=0.118 Sum_probs=43.5
Q ss_pred EEEeccC--CCCCCccchhhHHHHh---H-HHHHHcCCCcEEEEecChh--hhh---c-cCCCHHHH-HHHHHHHHHHHH
Q 025688 87 YLYTGRG--PSSEALHLGHLVPFMF---T-KYLQDAFKVPLVIQLTDDE--KCM---W-KNLSVEES-QRLARENAKDII 153 (249)
Q Consensus 87 ~iYtG~d--PSg~sLHlGHlv~~~~---l-~~lQ~~g~~~v~i~IaD~~--k~~---~-r~l~~e~i-~~~~~eni~~ii 153 (249)
++.||-- ||| .+||||+..... + |++.-.|...+++.=.|.| +.. . ...+.+++ .++..+..+++.
T Consensus 7 ~~i~~p~py~ng-~lHiGH~~~~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~ 85 (497)
T 2csx_A 7 FYVTTPIYYVND-VPHLGHAYTTIAADTIARYYRLRDYDVFFLTGTDEHGLKIQKKAEELGISPKELVDRNAERFKKLWE 85 (497)
T ss_dssp EEEEEEEEETTS-CCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHTHHHHSSSCHHHHHHHHHHHHHHHHH
T ss_pred EEEecCCCCCCC-ccchhhHHHHHHHHHHHHHHHhcCCceeeecccCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 4455554 568 899999876542 3 4444456444444433433 211 1 12455443 334445566777
Q ss_pred HcCCCCCceEEEEcCc
Q 025688 154 ACGFDVTKTFIFSDFD 169 (249)
Q Consensus 154 A~G~dp~kt~i~~ns~ 169 (249)
++|++++. .+..++
T Consensus 86 ~lgi~~d~--~~~t~~ 99 (497)
T 2csx_A 86 FLKIEYTK--FIRTTD 99 (497)
T ss_dssp HTTCCCSE--EEETTS
T ss_pred HhCCcCCC--CccCCC
Confidence 89998773 344554
No 54
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=88.08 E-value=1.4 Score=43.76 Aligned_cols=77 Identities=12% Similarity=0.097 Sum_probs=45.4
Q ss_pred CceEEEecc-CCCCCCccchhhHH-HH---hHHHHH-HcCCCcEEEEecChh--hhhc----cCCCHHHH-HHHHHHHHH
Q 025688 84 EKFYLYTGR-GPSSEALHLGHLVP-FM---FTKYLQ-DAFKVPLVIQLTDDE--KCMW----KNLSVEES-QRLARENAK 150 (249)
Q Consensus 84 k~~~iYtG~-dPSg~sLHlGHlv~-~~---~l~~lQ-~~g~~~v~i~IaD~~--k~~~----r~l~~e~i-~~~~~eni~ 150 (249)
+++++.|+. -|+| .+||||+.. .+ .+.+++ -.|+...++.=.|.| +... ...++.++ .++..+..+
T Consensus 2 ~~~~itt~~Py~nG-~lHiGHa~~~~i~~DiiaRy~rm~G~~V~~v~G~D~hG~pie~~A~k~G~~p~e~~~~~~~~~~~ 80 (722)
T 1rqg_A 2 VRYMVTSALPYANG-PIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALKEGRSPREIVDEFHEQIKI 80 (722)
T ss_dssp CEEEEEECCCBTTS-CCBHHHHHHHTHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCEEEecCCCCCCC-chhhchhhccHHHHHHHHHHHHhcCCceEecceeCCCCHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 468888887 6777 899999987 32 344444 456444444444444 2221 13565543 334444555
Q ss_pred HHHHcCCCCCc
Q 025688 151 DIIACGFDVTK 161 (249)
Q Consensus 151 ~iiA~G~dp~k 161 (249)
.+.++|++.+.
T Consensus 81 ~~~~lgis~D~ 91 (722)
T 1rqg_A 81 TFQRAKISFDF 91 (722)
T ss_dssp HHHHHTCCCSE
T ss_pred HHHHhCCCCCC
Confidence 67778987764
No 55
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}
Probab=87.93 E-value=1.3 Score=40.92 Aligned_cols=84 Identities=18% Similarity=0.115 Sum_probs=48.6
Q ss_pred CCceEEEeccCCCCCCccchhhHHHHh----HHHHHHcCCCcEEEEecChh--hhhc----cCCCHHHH-HHHHHHHHHH
Q 025688 83 GEKFYLYTGRGPSSEALHLGHLVPFMF----TKYLQDAFKVPLVIQLTDDE--KCMW----KNLSVEES-QRLARENAKD 151 (249)
Q Consensus 83 ~k~~~iYtG~dPSg~sLHlGHlv~~~~----l~~lQ~~g~~~v~i~IaD~~--k~~~----r~l~~e~i-~~~~~eni~~ 151 (249)
++....+||--|.+ .+||||+...+. .|++...|+...++.-.|++ +... ...++.++ .++..+..++
T Consensus 38 ~~v~~y~~gPt~yg-~~HiGHar~~v~~DvlaR~lr~~G~~V~~~~~~dd~g~ki~~~A~~~g~~~~~~~~~~~~~~~~~ 116 (414)
T 3c8z_A 38 PTATMYVCGITPYD-ATHLGHAATYLTFDLVHRLWLDAGHTVQYVQNVTDVDDPLFERAERDGIDWRTLGDRETQLFRED 116 (414)
T ss_dssp SEEEEEECCCCTTS-CCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCSCHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CCceEEeCCCcCCC-CcCccccHHHHHHHHHHHHHHHcCCCEEeCCCCCCccHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 33334567777777 899999876542 45666777655666644544 3221 12455443 3334455567
Q ss_pred HHHcCCC-CCceEEEEcCc
Q 025688 152 IIACGFD-VTKTFIFSDFD 169 (249)
Q Consensus 152 iiA~G~d-p~kt~i~~ns~ 169 (249)
+.++|+. ++ .+..-++
T Consensus 117 ~~~Lgi~~~d--~~~r~t~ 133 (414)
T 3c8z_A 117 MAALRVLPPH--DYVAATD 133 (414)
T ss_dssp HHHTTCCCCS--EEEEGGG
T ss_pred HHHcCCCCCc--ceecccc
Confidence 7779987 54 2344444
No 56
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A
Probab=87.81 E-value=2.4 Score=39.76 Aligned_cols=73 Identities=11% Similarity=0.042 Sum_probs=40.3
Q ss_pred EEEeccCC--CCCCccchhhHHHHh----HHHHHHcCCCcEEEEecChh--hhh----ccCCCHHHHHH-HHHHHHHHHH
Q 025688 87 YLYTGRGP--SSEALHLGHLVPFMF----TKYLQDAFKVPLVIQLTDDE--KCM----WKNLSVEESQR-LARENAKDII 153 (249)
Q Consensus 87 ~iYtG~dP--Sg~sLHlGHlv~~~~----l~~lQ~~g~~~v~i~IaD~~--k~~----~r~l~~e~i~~-~~~eni~~ii 153 (249)
+..||--| +| .+||||+...+. .|++.-.|...+++.=.|.| +.. ....++.+..+ +..+..+++.
T Consensus 5 ~~i~~p~py~~g-~lHiGH~r~~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~ 83 (500)
T 2d5b_A 5 FYVTTPIYYVNA-EPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQAAGEDPKAFVDRVSGRFKRAWD 83 (500)
T ss_dssp EEEECCCEETTS-CCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred EEEecCCCCCCC-CcchhhHHHHHHHHHHHHHHHcCCCceeeecccCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 45566666 67 899999876542 34455556444444333433 211 11245544333 3334556677
Q ss_pred HcCCCCC
Q 025688 154 ACGFDVT 160 (249)
Q Consensus 154 A~G~dp~ 160 (249)
++|++++
T Consensus 84 ~lgi~~d 90 (500)
T 2d5b_A 84 LLGIAYD 90 (500)
T ss_dssp HTTCCCS
T ss_pred HhCCcCC
Confidence 7899876
No 57
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}
Probab=87.53 E-value=1.4 Score=42.40 Aligned_cols=77 Identities=17% Similarity=0.214 Sum_probs=45.4
Q ss_pred CCceEEEec-cCCCCCCccchhhHHHHh----HHHHHHcCCCcEEEEecChh--hhhc----cCCCHHHHHH-HHHHHHH
Q 025688 83 GEKFYLYTG-RGPSSEALHLGHLVPFMF----TKYLQDAFKVPLVIQLTDDE--KCMW----KNLSVEESQR-LARENAK 150 (249)
Q Consensus 83 ~k~~~iYtG-~dPSg~sLHlGHlv~~~~----l~~lQ~~g~~~v~i~IaD~~--k~~~----r~l~~e~i~~-~~~eni~ 150 (249)
++++++-+. .-||| .+||||+...+. .|++...|+...++.-.|.| +... ...+++++.+ +..+..+
T Consensus 25 ~~~~~i~~~~py~ng-~lHiGH~r~~v~~D~laR~~r~~G~~V~~~~g~dd~G~ki~~~a~~~g~~p~~~~~~~~~~~~~ 103 (564)
T 3kfl_A 25 QKVFFATTPIYYVNA-SPHIGHVYSTLIVDVLGRYHRVKGEEVFVMTGTDEHGQKVAEAAAKQGVSPMDFTTSVSSEFKQ 103 (564)
T ss_dssp CCCEEEEEEEEECSS-CCCHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEECCSHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCCEEEeCCCCCCCC-CCCcchhHHHHHHHHHHHHHHHcCCcEEEecCcCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 455555443 24778 899999876543 45566677666666656655 3221 1256655433 3334455
Q ss_pred HHHHcCCCCC
Q 025688 151 DIIACGFDVT 160 (249)
Q Consensus 151 ~iiA~G~dp~ 160 (249)
++.++|+..+
T Consensus 104 ~~~~lgi~~D 113 (564)
T 3kfl_A 104 CFQEMNYDMN 113 (564)
T ss_dssp HHHHTTCCCS
T ss_pred HHHHcCCCCC
Confidence 6667888766
No 58
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=86.99 E-value=2.3 Score=43.43 Aligned_cols=92 Identities=17% Similarity=0.178 Sum_probs=50.4
Q ss_pred hHHHhhccccccCChhHHHHHHHcCCceEEEecc-CCCCCCccchhhHHHHh----HHHHHHcCCCcEEEEe-cChhh--
Q 025688 59 HVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGR-GPSSEALHLGHLVPFMF----TKYLQDAFKVPLVIQL-TDDEK-- 130 (249)
Q Consensus 59 ~~l~~Rgi~~~~~d~~~ll~~~e~~k~~~iYtG~-dPSg~sLHlGHlv~~~~----l~~lQ~~g~~~v~i~I-aD~~k-- 130 (249)
....+.++|....+. +++++++++|+ -||| .|||||...... .|++.-.| ..|.... .|.|.
T Consensus 36 ~~W~~~~~f~~~~~~--------~~~~~~v~~~~PypnG-~lHiGHa~~~~~~DvlaRy~rm~G-~~V~~~~G~D~~Glp 105 (880)
T 4arc_A 36 LHWDEKRTFEVTEDE--------SKEKYYCLSMLPYPSG-RLHMGHVRNYTIGDVIARYQRMLG-KNVLQPIGWDAFGLP 105 (880)
T ss_dssp HHHHHTTTTCCCCCT--------TSCEEEEEECCCCCCS-SCCHHHHHHHHHHHHHHHHHHHTT-CEEECCCEECCCSTH
T ss_pred HHHHhcCCcccCCcC--------CCCCEEEEcCCCCCCC-CcchhhhHHHHHHHHHHHHHHHcC-CceEEecCccccCcH
Confidence 345677777654331 36788999887 6677 899999886642 44445556 4444442 23331
Q ss_pred ---hh-ccCCCHHHHH-HHHHHHHHHHHHcCCCCC
Q 025688 131 ---CM-WKNLSVEESQ-RLARENAKDIIACGFDVT 160 (249)
Q Consensus 131 ---~~-~r~l~~e~i~-~~~~eni~~iiA~G~dp~ 160 (249)
.. ....+..+.. ++.....+.+.++|+..+
T Consensus 106 ie~~a~~~g~~p~~~~~~~i~~~~~~l~~LGis~D 140 (880)
T 4arc_A 106 AEGAAVKNNTAPAPWTYDNIAYMKNQLKMLGFGYD 140 (880)
T ss_dssp HHHHHHHTTSCHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCcC
Confidence 11 1224544322 222233344556787654
No 59
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Probab=86.56 E-value=2.3 Score=40.74 Aligned_cols=83 Identities=17% Similarity=0.107 Sum_probs=46.0
Q ss_pred eEEE-eccCCCCCCccchhhHHHH---h-HHHHHHcCCCcEEEE-ecCh---------h--hhhcc----CCCHHH-HHH
Q 025688 86 FYLY-TGRGPSSEALHLGHLVPFM---F-TKYLQDAFKVPLVIQ-LTDD---------E--KCMWK----NLSVEE-SQR 143 (249)
Q Consensus 86 ~~iY-tG~dPSg~sLHlGHlv~~~---~-l~~lQ~~g~~~v~i~-IaD~---------~--k~~~r----~l~~e~-i~~ 143 (249)
+.+| ||--|.+ .+||||+.+.+ . .|++.-.|....+++ |+|. | |...+ ..++.+ +.+
T Consensus 43 v~~YvcgPTvYg-~~HIGHar~~v~~Dvl~R~lr~~Gy~V~~v~niTDvGhltG~~DehddKI~~~A~~~g~~~~e~a~~ 121 (501)
T 3sp1_A 43 VKVYACGPTVYN-YAHIGNFRTYIFGDLLIKTLRFLGYKVNYAMNITDIGHLTGDLDDGEDKVAKTAREKGLTVYEISEF 121 (501)
T ss_dssp EEEEECCCBCSS-CCCHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEBCSCCC-------------------CCHHHHHHH
T ss_pred ceEEeCCCcCCC-CcchhhhHHHHHHHHHHHHHHHcCCceeEEeeecccccccCCCCCCCcHHHHHHHHcCCCHHHHHHH
Confidence 4444 5766667 99999977654 2 456666675444444 5443 2 43321 245544 444
Q ss_pred HHHHHHHHHHHcCCCCCceEEEEcCcC
Q 025688 144 LARENAKDIIACGFDVTKTFIFSDFDY 170 (249)
Q Consensus 144 ~~~eni~~iiA~G~dp~kt~i~~ns~~ 170 (249)
+..+..+++.++|+.++.. +-..++.
T Consensus 122 ~~~~f~~d~~~Lgi~~d~~-~~~~t~h 147 (501)
T 3sp1_A 122 FTEAFFNDCRKLNIVYPDK-VLVASKH 147 (501)
T ss_dssp HHHHHHHHHHHTTCCCCSE-EEEGGGC
T ss_pred HHHHHHHHHHHcCCCCCCc-ccCcchH
Confidence 5556667788899987643 2334443
No 60
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Probab=86.37 E-value=3.5 Score=38.90 Aligned_cols=76 Identities=17% Similarity=0.154 Sum_probs=42.6
Q ss_pred CceEEEecc-CCCCCCccchhhHHHHh----HHHHHHcCCCcEEEEecChh--hhh----ccCCCHHHH-HHHHHHHHHH
Q 025688 84 EKFYLYTGR-GPSSEALHLGHLVPFMF----TKYLQDAFKVPLVIQLTDDE--KCM----WKNLSVEES-QRLARENAKD 151 (249)
Q Consensus 84 k~~~iYtG~-dPSg~sLHlGHlv~~~~----l~~lQ~~g~~~v~i~IaD~~--k~~----~r~l~~e~i-~~~~~eni~~ 151 (249)
+.+++.|.+ -|+| .+||||+...+. .|++.-.|....++.=.|.| +.. ....++.++ +++..+..++
T Consensus 12 ~~~~i~t~~P~~ng-~lHiGHa~~~i~~D~l~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~ 90 (524)
T 2x1l_A 12 EPFYITTAIAYPNG-VPHIGHAYEYIATDAIARFKRLDGYDVRYLTGTDVHGQKMAETAAKEGIPAAELARRNSDVFQRL 90 (524)
T ss_dssp CEEEEEECCBCCSS-CCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred CCEEEeeCCCCCCC-CcccchhHHHHHHHHHHHHHHhcCCceeeeCCcCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 455566654 4567 899999876542 34455566544444444433 221 112455443 3344455566
Q ss_pred HHHcCCCCC
Q 025688 152 IIACGFDVT 160 (249)
Q Consensus 152 iiA~G~dp~ 160 (249)
+.++|+.++
T Consensus 91 ~~~lgi~~d 99 (524)
T 2x1l_A 91 QEKLNISFD 99 (524)
T ss_dssp HHHTTCCCS
T ss_pred HHHcCCcCC
Confidence 777898765
No 61
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii}
Probab=86.29 E-value=1.4 Score=41.72 Aligned_cols=76 Identities=20% Similarity=0.165 Sum_probs=46.9
Q ss_pred CceEE-EeccCCCCCCccchhhHHHHh----HHHHHHcCCCcEEEE-ecChh-hhhc----cCCCHHHH-HHHHHHHHHH
Q 025688 84 EKFYL-YTGRGPSSEALHLGHLVPFMF----TKYLQDAFKVPLVIQ-LTDDE-KCMW----KNLSVEES-QRLARENAKD 151 (249)
Q Consensus 84 k~~~i-YtG~dPSg~sLHlGHlv~~~~----l~~lQ~~g~~~v~i~-IaD~~-k~~~----r~l~~e~i-~~~~~eni~~ 151 (249)
+++.+ +||--|.+ .+||||+.+.+. .|++...|+...++. ++|.- |... ...++.++ .++..+..++
T Consensus 24 ~~v~~YvcGPtvy~-~~HIGHaR~~v~~Dvl~R~lr~~Gy~V~~v~n~dD~ddKIi~~A~~~g~~~~e~a~~~~~~f~~d 102 (462)
T 3tqo_A 24 GKVKLYVCGMTVYD-YMHIGHGRSWIIFDMVVRYLRMRGYEVTFVRNITDIDDKIIKRAGENKESPAALAERFIQILHED 102 (462)
T ss_dssp TEEEEEECCCBTTS-CCBHHHHHHHHHHHHHHHHHHHTTCEEEEEECBBCCCHHHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred CeEEEEeCCCcCCC-CCchhhhHHHHHHHHHHHHHHHcCCceEEecCcCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 34444 47888997 999999876642 456677776555555 44433 4332 12555443 4444566677
Q ss_pred HHHcCCCCC
Q 025688 152 IIACGFDVT 160 (249)
Q Consensus 152 iiA~G~dp~ 160 (249)
+.++|+.+.
T Consensus 103 ~~~LgI~~d 111 (462)
T 3tqo_A 103 EKALRVLSP 111 (462)
T ss_dssp HHHHTCCCC
T ss_pred HHHcCCCCC
Confidence 888998764
No 62
>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima}
Probab=84.92 E-value=1.5 Score=41.64 Aligned_cols=78 Identities=12% Similarity=0.139 Sum_probs=46.6
Q ss_pred eEEEeccCCCCCCccchhhHHHHhHHHHHHcCCCcEEEEecChhhhhccCCCHHHHHHHHHHHHHHHHHcCCCCCce---
Q 025688 86 FYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKT--- 162 (249)
Q Consensus 86 ~~iYtG~dPSg~sLHlGHlv~~~~l~~lQ~~g~~~v~i~IaD~~k~~~r~l~~e~i~~~~~eni~~iiA~G~dp~kt--- 162 (249)
++....=-||| .|||||+-..+..--+.+..+...++-|.|-..- | .. ..+..+.++++..+|++++..
T Consensus 14 v~~RfaPsPTG-~LHiG~aRtAl~n~~~Ar~~~G~~iLRieDtD~~--r-~~----~~~~~~I~~~l~wlGl~~de~p~~ 85 (481)
T 2o5r_A 14 VRVRFAPSPTG-FLHVGGARTALFNFLFARKEKGKFILRIEDTDLE--R-SE----REYEEKLMESLRWLGLLWDEGPDV 85 (481)
T ss_dssp CEEEECCCCCS-CCBHHHHHHHHHHHHHHHHHTCEEEECBCCSSCC--S-GG----GHHHHHHHHHHHHHTCCCSBBTTT
T ss_pred EEEEECCCCCC-CcCHHHHHHHHHHHHHHHHcCCeEEEEEecCCcc--c-cH----HHHHHHHHHHHHHcCCCCCCCccc
Confidence 45677778998 9999999988763223332223555667765521 1 11 122224566677789987642
Q ss_pred ----EEEEcCcCC
Q 025688 163 ----FIFSDFDYV 171 (249)
Q Consensus 163 ----~i~~ns~~~ 171 (249)
-.+.||+-.
T Consensus 86 gg~~g~y~QS~r~ 98 (481)
T 2o5r_A 86 GGDHGPYRQSERV 98 (481)
T ss_dssp BCTTCCCBGGGGH
T ss_pred CCCCCceeeeccH
Confidence 245687753
No 63
>4gri_A Glutamate--tRNA ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, aminoacyl-tRNA synthetase; HET: GLU; 2.60A {Borrelia burgdorferi}
Probab=83.96 E-value=1.8 Score=41.37 Aligned_cols=71 Identities=11% Similarity=0.262 Sum_probs=41.5
Q ss_pred CCCCCCccchhhHHHHhHHHHHHcCCCcEEEEecChhhhhccCCCHHHHHHHHHHHHHHHHHcCCCCCce-------EEE
Q 025688 93 GPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKT-------FIF 165 (249)
Q Consensus 93 dPSg~sLHlGHlv~~~~l~~lQ~~g~~~v~i~IaD~~k~~~r~l~~e~i~~~~~eni~~iiA~G~dp~kt-------~i~ 165 (249)
.||| .|||||+..+++.-.+.++.+..+++-|=|--.. | -..+-.. ..+.++.-+|++++.- ..+
T Consensus 32 sPtG-~LHiG~artAl~n~~~Ar~~~G~fiLRieDtD~~--R-~~~~~~~----~I~~~L~wlGl~wDe~p~~~g~~~py 103 (512)
T 4gri_A 32 SPTG-LQHIGGIRTALFNYFFAKSCGGKFLLRIEDTDQS--R-YSPEAEN----DLYSSLKWLGISFDEGPVVGGDYAPY 103 (512)
T ss_dssp CSSS-CCBHHHHHHHHHHHHHHHHTTCEEEECBCCCCTT--S-CCHHHHH----HHHHHHHHHTCCCSBBTTTBCTTCCC
T ss_pred CCCC-cccHHHHHHHHHHHHHHHHcCCEEEEEeCcCCCC--c-CCHHHHH----HHHHHHHHcCCCCCcCCccCCCCCCc
Confidence 6788 9999999988864334444445566656664321 1 1222222 3445566689886532 346
Q ss_pred EcCcCC
Q 025688 166 SDFDYV 171 (249)
Q Consensus 166 ~ns~~~ 171 (249)
.||+-.
T Consensus 104 ~QS~r~ 109 (512)
T 4gri_A 104 VQSQRS 109 (512)
T ss_dssp BGGGCH
T ss_pred cccchH
Confidence 788754
No 64
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=77.64 E-value=3.1 Score=42.35 Aligned_cols=91 Identities=15% Similarity=0.142 Sum_probs=47.8
Q ss_pred HHHhhccccccC-ChhHHHHHHHcCCceEEEecc-CCCCCCccchhhHHHH----hHHHHHHcCCCcEEEE-ecChhh--
Q 025688 60 VFLRRGVFFAHR-DLNDILDAYEKGEKFYLYTGR-GPSSEALHLGHLVPFM----FTKYLQDAFKVPLVIQ-LTDDEK-- 130 (249)
Q Consensus 60 ~l~~Rgi~~~~~-d~~~ll~~~e~~k~~~iYtG~-dPSg~sLHlGHlv~~~----~l~~lQ~~g~~~v~i~-IaD~~k-- 130 (249)
...+.+++.... + .+++++++.+|+ -||| .|||||..... ..|++.-.|. .|... =.|.|.
T Consensus 16 ~W~~~~~f~~~~~~--------~~~~k~~v~~~~Py~nG-~lHiGHa~~~~~~Dvl~Ry~rm~G~-~V~~~~G~D~~Glp 85 (878)
T 2v0c_A 16 FWEEKGFMKAKDLP--------GGRGKQYVLVMFPYPSG-DLHMGHLKNYTMGDVLARFRRMQGY-EVLHPMGWDAFGLP 85 (878)
T ss_dssp HHHHHTTTCCCSCC--------C---EEEEEECCCCCSS-CCBHHHHHHHHHHHHHHHHHHHHTC-EEECCCCBCCSSHH
T ss_pred HHHHcCCcccCccc--------CCCCCEEEECCCCCCCC-CcchhhhHHHHHHHHHHHHHHhcCC-ceEeecccCcccHH
Confidence 445667776543 2 124568999884 4566 89999988654 2445555664 44444 233331
Q ss_pred h---hc-cCCCHHHH-HHHHHHHHHHHHHcCCCCC
Q 025688 131 C---MW-KNLSVEES-QRLARENAKDIIACGFDVT 160 (249)
Q Consensus 131 ~---~~-r~l~~e~i-~~~~~eni~~iiA~G~dp~ 160 (249)
. .. ...+..+. .++..+..+.+.++|+..+
T Consensus 86 ie~~a~k~g~~~~~~~~~~~~~~~~~~~~LGi~~D 120 (878)
T 2v0c_A 86 AENAALKFGVHPKDWTYANIRQAKESLRLMGILYD 120 (878)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCccC
Confidence 1 11 22444332 3233334455666887554
No 65
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=74.62 E-value=3.7 Score=41.96 Aligned_cols=47 Identities=21% Similarity=0.196 Sum_probs=30.0
Q ss_pred cCCceEEEecc-CCCCCCccchhhHHHH---hHHHHHHcCCCcEEEE-ecChh
Q 025688 82 KGEKFYLYTGR-GPSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQ-LTDDE 129 (249)
Q Consensus 82 ~~k~~~iYtG~-dPSg~sLHlGHlv~~~---~l~~lQ~~g~~~v~i~-IaD~~ 129 (249)
.+++|++.+|. -||| .|||||.+... .+.++++.-+..+... =.|-|
T Consensus 46 ~~~~f~i~~~pPY~nG-~lHiGHa~n~~~~Dii~Ry~rm~G~~v~~~~GwD~h 97 (917)
T 1ffy_A 46 GNETFILHDGPPYANG-NLHMGHALNKILKDFIVRYKTMQGFYAPYVPGWDTH 97 (917)
T ss_dssp TSCBCCEECCCCBSSS-CCCHHHHHHHHHHHHHHHHHHTTTCBCCCCCEEBCC
T ss_pred CCCceeeCCCCCCCCC-cchHHHHHHHHHHHHHHHHHHhCCCCCCCcccCchh
Confidence 35689999998 6787 89999988653 2345555433444444 33444
No 66
>3oqi_A YVMC, putative uncharacterized protein YVMC; tRNA, rossmann fold, ligase; HET: NHE; 1.70A {Bacillus licheniformis} PDB: 3oqh_A* 3oqj_A* 3s7t_A* 3oqi_B*
Probab=72.65 E-value=48 Score=28.88 Aligned_cols=94 Identities=15% Similarity=0.204 Sum_probs=64.7
Q ss_pred HHcCCceEEEeccCCCCCCccchhhHHHHhHHHHHHcCCCcEEEEecChh-hhh--ccCCCHHHHHHHHHHHH-------
Q 025688 80 YEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDE-KCM--WKNLSVEESQRLARENA------- 149 (249)
Q Consensus 80 ~e~~k~~~iYtG~dPSg~sLHlGHlv~~~~l~~lQ~~g~~~v~i~IaD~~-k~~--~r~l~~e~i~~~~~eni------- 149 (249)
++.|+ .+..|+-|=- +-|=+-.+-.+. .|.+..+ ..|.|+++|-+ +.+ ....+..+.++.++...
T Consensus 26 ~~~g~--HallGISpgN-syFs~d~L~~Li-~Wa~~~F-~~vdVli~D~~~~~~l~A~G~~~~~A~rKArre~~~~r~~i 100 (257)
T 3oqi_A 26 LKRRR--HVLVGISPFN-SRFSEDYIHRLI-AWAVREF-QSVSVLLAGKEAANLLEALGTPHGKAERKVRKEVSRNRRFA 100 (257)
T ss_dssp HHHTC--EEEEEECTTS-TTCCHHHHHHHH-HHHHHHC-SEEEEEECCTTHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HhCCC--eEEEEeCCCC-cccCHHHHHHHH-HHHHccC-CceEEEeCCHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH
Confidence 44455 6889999986 888888887765 6988888 68999999987 433 24467777666664333
Q ss_pred -HHHHHcCCCCCceEEEEcCcCCCcccHHHHH
Q 025688 150 -KDIIACGFDVTKTFIFSDFDYVGGAFYKNMV 180 (249)
Q Consensus 150 -~~iiA~G~dp~kt~i~~ns~~~~~~~~~~~l 180 (249)
..+.++|...+ .+..=||+..+..|..+.
T Consensus 101 ~ral~~~g~~~~--~v~~~Sd~~~~~~Y~~l~ 130 (257)
T 3oqi_A 101 EKALEAHGGNPE--DIHTFSDFANQTAYRNLR 130 (257)
T ss_dssp HHHHHHHTCCTT--CEEETTTTTTCHHHHHHH
T ss_pred HHHHHHcCCCcc--cceeHHHhhcCHHHHHHH
Confidence 23444688766 566668886655555544
No 67
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*
Probab=70.95 E-value=3.1 Score=40.60 Aligned_cols=44 Identities=16% Similarity=0.240 Sum_probs=30.1
Q ss_pred CceEE-EeccCCCCCCccchhhHHHHh----HHHHHHcCCCcEEEE-ecCh
Q 025688 84 EKFYL-YTGRGPSSEALHLGHLVPFMF----TKYLQDAFKVPLVIQ-LTDD 128 (249)
Q Consensus 84 k~~~i-YtG~dPSg~sLHlGHlv~~~~----l~~lQ~~g~~~v~i~-IaD~ 128 (249)
+++.+ |||==|++ .|||||+-+.+. .+.|.-.|+..+.+. |+||
T Consensus 143 ~~V~ve~~spN~~~-plHvGHlRs~iiGD~laRil~~~G~~V~~~~~i~D~ 192 (607)
T 1f7u_A 143 KKVIIEFSSPNIAK-PFHAGHLRSTIIGGFLANLYEKLGWEVIRMNYLGDW 192 (607)
T ss_dssp CEEEEECCCCBTTS-CCBGGGHHHHHHHHHHHHHHHHTTCEEEEEEEEBCC
T ss_pred CeEEEEecCCCCCC-CCccchHHHHHHHHHHHHHHHHcCCCeeEEEeecCc
Confidence 34444 57888998 899999887652 455666776544443 8984
No 68
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1
Probab=69.34 E-value=2.8 Score=40.61 Aligned_cols=42 Identities=29% Similarity=0.412 Sum_probs=28.0
Q ss_pred eEEEeccCCCCCCccchhhHHHHh----HHHHHHcCCCcEEEE-ecCh
Q 025688 86 FYLYTGRGPSSEALHLGHLVPFMF----TKYLQDAFKVPLVIQ-LTDD 128 (249)
Q Consensus 86 ~~iYtG~dPSg~sLHlGHlv~~~~----l~~lQ~~g~~~v~i~-IaD~ 128 (249)
..=|||-=|++ .|||||+-+.+. .+++.-.|+....+. |+|+
T Consensus 106 ~ve~~spn~~~-~~HiGH~R~~iigD~laR~l~~~G~~V~~~~~i~D~ 152 (592)
T 1iq0_A 106 LVEHTSVNPNK-ELHVGHLRNIALGDAIARILAYAGREVLVLNYIDDT 152 (592)
T ss_dssp EEECCCCCTTS-CCBHHHHHHHHHHHHHHHHHHHTTEEEEEEEEECTT
T ss_pred EEEeeCCCCCC-CCcchHHHHHHHHHHHHHHHHHcCCceEEEeccCCc
Confidence 34467888888 899999886652 345666675433333 8887
No 69
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=67.31 E-value=4.6 Score=41.03 Aligned_cols=60 Identities=15% Similarity=0.175 Sum_probs=38.3
Q ss_pred HHHhhccccccCChhHHHHHHHcCCceEEEecc-CCCCCCccchhhHHHH---hHHHHHHcCCCcEEEEecChh
Q 025688 60 VFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGR-GPSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQLTDDE 129 (249)
Q Consensus 60 ~l~~Rgi~~~~~d~~~ll~~~e~~k~~~iYtG~-dPSg~sLHlGHlv~~~---~l~~lQ~~g~~~v~i~IaD~~ 129 (249)
...+ |+|....+ .+++++++++|. -||| .||+||++... .+.++++.-+..+....|-+|
T Consensus 19 ~W~~-~~f~~~~~--------~~~~~f~i~~ppPy~nG-~lHiGHa~~~~l~Dii~Ry~rm~G~~vl~~~G~D~ 82 (862)
T 1gax_A 19 KWAK-NPFVANPK--------SGKPPFVIFMPPPNVTG-SLHMGHALDNSLQDALIRYKRMRGFEAVWLPGTDH 82 (862)
T ss_dssp HHHH-SCCCCCTT--------CCSCEEEEECCCCBSSS-CCCHHHHHHHHHHHHHHHHHHTTTSEEEEECEEBC
T ss_pred HHHh-CCCccCcC--------CCCCcEEEEcCCCCCCC-CcchhhhHHHHHHHHHHHHHHhCCCccccccccCC
Confidence 4456 77765432 235789999984 5677 89999988553 344555554456666655444
No 70
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=66.52 E-value=3.5 Score=41.45 Aligned_cols=47 Identities=17% Similarity=0.183 Sum_probs=32.1
Q ss_pred cCCceEEEecc-CCCCCCccchhhHHHH---h-HHHHHHcCCCcEEEEecChh
Q 025688 82 KGEKFYLYTGR-GPSSEALHLGHLVPFM---F-TKYLQDAFKVPLVIQLTDDE 129 (249)
Q Consensus 82 ~~k~~~iYtG~-dPSg~sLHlGHlv~~~---~-l~~lQ~~g~~~v~i~IaD~~ 129 (249)
++++++++.|. -||| .||+||+.... . .|+..-.|...+++.=.|.|
T Consensus 36 ~~~~f~i~~~pPy~nG-~lHiGH~~~~~~~D~i~R~~rm~G~~v~~~~G~D~~ 87 (821)
T 1ile_A 36 GGPRYTVYEGPPTANG-LPHVGHAQARSYKDLFPRYKTMRGYYAPRRAGWDTH 87 (821)
T ss_dssp TSCBCCBCCCCCCTTS-CCCTTHHHHHHHHHHHHHHHHHTTCBCCCEEEECCC
T ss_pred CCCcEEEecCCCCCCC-CCchhhhHhHHHHHHHHHHHHhcCCcccccccccCC
Confidence 46789999998 7888 89999988653 2 34444456555555555555
No 71
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A
Probab=65.24 E-value=4.5 Score=39.60 Aligned_cols=44 Identities=23% Similarity=0.244 Sum_probs=30.0
Q ss_pred CceEE-EeccCCCCCCccchhhHHHHh----HHHHHHcCCCcEEEE-ecCh
Q 025688 84 EKFYL-YTGRGPSSEALHLGHLVPFMF----TKYLQDAFKVPLVIQ-LTDD 128 (249)
Q Consensus 84 k~~~i-YtG~dPSg~sLHlGHlv~~~~----l~~lQ~~g~~~v~i~-IaD~ 128 (249)
+++.+ |||-=|++ .|||||+-+.+. .+.|.-.|+....+. |+|+
T Consensus 119 ~~V~ve~~spN~~~-~~HiGH~Rs~iigD~laR~l~~~G~~V~~~~~i~D~ 168 (629)
T 2zue_A 119 KKVIVEHTSVNPTK-PLHMGHARNAILGDVMARILRFLGYEVEVQNYIDDL 168 (629)
T ss_dssp CEEEEECCCCCTTS-CCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECTT
T ss_pred CEEEEEeeCCCCCC-CCccchhHHHHHHHHHHHHHHHcCCCceEEecccch
Confidence 34544 68888998 899999876652 445666775444433 8887
No 72
>1qjc_A Phosphopantetheine adenylyltransferase; coenzyme A biosynthesis, nucleotidyltransferase; HET: PNS; 1.64A {Escherichia coli} SCOP: c.26.1.3 PDB: 1h1t_A* 1gn8_A* 1b6t_A* 3l92_A* 3l93_A
Probab=52.37 E-value=31 Score=26.46 Aligned_cols=40 Identities=18% Similarity=0.230 Sum_probs=24.9
Q ss_pred ceEEEeccCCCCCCccchhhHHHHhHHHHHHcCCCcEEEEecChhh
Q 025688 85 KFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEK 130 (249)
Q Consensus 85 ~~~iYtG~dPSg~sLHlGHlv~~~~l~~lQ~~g~~~v~i~IaD~~k 130 (249)
++.++.|-- +.+|+||+--+..+ .+.++..+++.-.||+|
T Consensus 2 ~i~i~~GsF---DpvH~GH~~l~~~a---~~~~d~v~v~~~~~p~k 41 (158)
T 1qjc_A 2 KRAIYPGTF---DPITNGHIDIVTRA---TQMFDHVILAIAASPSK 41 (158)
T ss_dssp CEEEEEECC---TTCCHHHHHHHHHH---HTTSSEEEEEEESCCSS
T ss_pred CEEEEEecC---CCCCHHHHHHHHHH---HHhCCEEEEEECCCCCC
Confidence 466777744 67999997655543 33344444555667776
No 73
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Probab=47.56 E-value=8.5 Score=39.48 Aligned_cols=57 Identities=23% Similarity=0.253 Sum_probs=33.7
Q ss_pred HHHhhccccccCChhHHHHHHHcCCceEEEecc-CCCCCCccchhhHHHH---hHHHHHH-cCCCcEEE
Q 025688 60 VFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGR-GPSSEALHLGHLVPFM---FTKYLQD-AFKVPLVI 123 (249)
Q Consensus 60 ~l~~Rgi~~~~~d~~~ll~~~e~~k~~~iYtG~-dPSg~sLHlGHlv~~~---~l~~lQ~-~g~~~v~i 123 (249)
...+.++|....+ . -+.+++|+++.|+ -||| .||+||.+... .+.++++ .|...++.
T Consensus 16 ~W~~~~~f~~~~~-----~-~~~~~kf~i~~~pPy~nG-~lHiGH~~~~~~~Dii~Ry~rm~G~~Vl~~ 77 (967)
T 1wz2_A 16 RWLEAKIFEPNIR-----D-KPKEKKFYITVAFPYLSG-HLHVGHARTYTIPDVIARFKRMQGYNVLFP 77 (967)
T ss_dssp HHHHHTTTSCCGG-----G-SCGGGCCBEEECCCBCSS-CCBHHHHHHHHHHHHHHHHHHHTTCCCBCC
T ss_pred HHHhCCCcccCcc-----c-cCCCCcEEEEeCCCCCCC-CcchhhhHHHHHHHHHHHHHHcCCCccCCC
Confidence 4556777754332 0 0112689999998 3576 89999988653 2334444 45443333
No 74
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni}
Probab=45.20 E-value=19 Score=33.77 Aligned_cols=46 Identities=24% Similarity=0.407 Sum_probs=29.9
Q ss_pred CCce-EEEeccCCCCCCccchhhHHHHh----HHHHHHcCCCcEEEE--ecChhh
Q 025688 83 GEKF-YLYTGRGPSSEALHLGHLVPFMF----TKYLQDAFKVPLVIQ--LTDDEK 130 (249)
Q Consensus 83 ~k~~-~iYtG~dPSg~sLHlGHlv~~~~----l~~lQ~~g~~~v~i~--IaD~~k 130 (249)
++++ .=|+.==||| .||+||+-.... .+.+.-.|+ .|.=. |+||=.
T Consensus 29 ~~~v~vE~ss~n~~~-~~h~gh~r~~~~gd~~~r~~~~~G~-~v~r~nyi~D~G~ 81 (464)
T 3fnr_A 29 QESFLLEYVSANPTG-PLHIGHARGAVFGDTLTRLARHLGY-KFNTEYYVNDAGN 81 (464)
T ss_dssp SCEEEEECCCCCSSS-SCBGGGHHHHHHHHHHHHHHHHTTC-EEEEEEEECCCHH
T ss_pred CCEEEEEeCCCCCCC-CCccchhHHHHHHHHHHHHHHHcCC-ceEEEeeeCCccH
Confidence 4444 3467888998 899999876643 344555564 44332 888764
No 75
>3nv7_A Phosphopantetheine adenylyltransferase; helicobacter pylori 26695 strain, mutant I4V/N76Y, phosphopa adenylyltransferase; 1.75A {Helicobacter pylori} PDB: 3otw_A*
Probab=43.74 E-value=55 Score=25.95 Aligned_cols=49 Identities=20% Similarity=0.337 Sum_probs=28.3
Q ss_pred ceEEEeccCCCCCCccchhhHHHHhHHHHHHcCCCcEEEEec-ChhhhhccCCCHHHHH
Q 025688 85 KFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLT-DDEKCMWKNLSVEESQ 142 (249)
Q Consensus 85 ~~~iYtG~dPSg~sLHlGHlv~~~~l~~lQ~~g~~~v~i~Ia-D~~k~~~r~l~~e~i~ 142 (249)
++.+|.|-- +.+|.||+--+...+ +.++. +++.++ |++| ....+.++-.
T Consensus 3 ~i~i~~GsF---DPiH~GHl~ii~~A~---~~~D~-viv~v~~~~~K--~~~~~~~eR~ 52 (157)
T 3nv7_A 3 KVGIYPGTF---DPVTNGHIDIIHRSS---ELFEK-LIVAVAHSSAK--NPMFSLDERL 52 (157)
T ss_dssp CEEEEEECC---TTCCHHHHHHHHHHH---TTSSE-EEEEEECCGGG--CCSSCHHHHH
T ss_pred EEEEEEEEc---CCCCHHHHHHHHHHH---HhCCc-eEEEEccCCCC--CCCCCHHHHH
Confidence 356777743 689999976665443 33543 444444 4555 1225666544
No 76
>3oqv_A ALBC; rossman fold, cyclodipeptide synthase, aminoacyl-tRNA, prote binding; 1.90A {Streptomyces noursei}
Probab=42.98 E-value=60 Score=28.07 Aligned_cols=92 Identities=11% Similarity=0.097 Sum_probs=64.5
Q ss_pred eEEEeccCCCCCCccchhhHHHHhHHHHHHcCCCcEEEEecChh-hhh--ccCCCHHHHHHHHHHHH--------HHHHH
Q 025688 86 FYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDE-KCM--WKNLSVEESQRLARENA--------KDIIA 154 (249)
Q Consensus 86 ~~iYtG~dPSg~sLHlGHlv~~~~l~~lQ~~g~~~v~i~IaD~~-k~~--~r~l~~e~i~~~~~eni--------~~iiA 154 (249)
=.+..|+-|=- +-|=+-.+-.+. .|.+..+ ..|-|+++|-+ +.+ ....+.++.++.++... ..+.+
T Consensus 30 ~HallGVSpgN-syFs~drl~~li-~Wa~~~F-~~vdVli~D~~~~~tl~A~G~~~~~A~rKarr~~~~~r~~i~ral~~ 106 (247)
T 3oqv_A 30 EHALIGISAGN-SYFSQKNTVMLL-QWAGQRF-ERTDVVYVDTHIDEMLIADGRSAQEAERSVKRTLKDLRRRLRRSLES 106 (247)
T ss_dssp EEEEEEEESSC-TTCCHHHHHHHH-HHHHHHE-EEEEEEEECSSHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEeCCCC-cccCHHHHHHHH-HHHHccC-CceEEEeCChHHhhhhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37889999986 888888887765 6888888 58999999986 543 22467766666664333 33445
Q ss_pred cCCCCCceEEEEcCcCCCcccHHHHH
Q 025688 155 CGFDVTKTFIFSDFDYVGGAFYKNMV 180 (249)
Q Consensus 155 ~G~dp~kt~i~~ns~~~~~~~~~~~l 180 (249)
+|.+.++..+..=||+..+..|..+.
T Consensus 107 ~~~~~~~~rv~~~Sd~~~~~~Y~~l~ 132 (247)
T 3oqv_A 107 VGDHAERFRVRSLSELQETPEYRAVR 132 (247)
T ss_dssp HCTTGGGEEEEEHHHHTTSHHHHHHH
T ss_pred hCCCccCceeeeHHHhhCCHHHHHHH
Confidence 78877776677668876665665554
No 77
>3do8_A Phosphopantetheine adenylyltransferase; protein with unknown function, structural genomics, MCSG, PSI-2, protein structure initiative; 1.60A {Archaeoglobus fulgidus}
Probab=40.54 E-value=95 Score=24.15 Aligned_cols=57 Identities=18% Similarity=0.137 Sum_probs=31.7
Q ss_pred EEEeccCCCCCCccchhhHHHHhHHHHHHcCCCcEEEEecC-hh-hhhccC-CCHHHHHHHHHHHH
Q 025688 87 YLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTD-DE-KCMWKN-LSVEESQRLARENA 149 (249)
Q Consensus 87 ~iYtG~dPSg~sLHlGHlv~~~~l~~lQ~~g~~~v~i~IaD-~~-k~~~r~-l~~e~i~~~~~eni 149 (249)
.+|.|-- +.+|.||+.-+.....+ . .+ .+++.++. +. +...+. .+.++-.++.+..+
T Consensus 3 ~i~gGtF---DPiH~GHl~l~~~a~~~-~-~d-~viv~v~~~~~~~k~~~~~~~~~~R~~ml~~a~ 62 (148)
T 3do8_A 3 VALGGTF---EPLHEGHKKLIDVAIKL-G-GR-DITIGVTSDRMARARIRSVLPFAIRAENVKRYV 62 (148)
T ss_dssp EEEEECC---SSCCHHHHHHHHHHHHH-H-TT-CEEEEEECHHHHHHHSCCCSCHHHHHHHHHHHH
T ss_pred EEEEeeC---CCCCHHHHHHHHHHHHh-C-CC-EEEEEECCCccccccCCCCCCHHHHHHHHHHHH
Confidence 4566633 68999999888776555 1 22 35555554 33 222233 57766554444433
No 78
>3k9w_A Phosphopantetheine adenylyltransferase; niaid, ssgcid, seattle structural genomics center for infect disease, coenzyme A, COA; HET: 4PS ADE PG4; 1.60A {Burkholderia pseudomallei} PDB: 3ikz_A* 3pxu_A*
Probab=38.41 E-value=87 Score=25.50 Aligned_cols=51 Identities=22% Similarity=0.176 Sum_probs=31.1
Q ss_pred CceEEEeccCCCCCCccchhhHHHHhHHHHHHcCCCcEEEEecChhhhhccCCCHHHHH
Q 025688 84 EKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQ 142 (249)
Q Consensus 84 k~~~iYtG~dPSg~sLHlGHlv~~~~l~~lQ~~g~~~v~i~IaD~~k~~~r~l~~e~i~ 142 (249)
-++.+|.| |=+.+|+||+-.+...+.+ ++..++.+..|++|. ...+.++-.
T Consensus 22 mki~v~~G---sFDpiH~GHl~li~~A~~~---~d~viv~v~~~p~K~--~l~s~eeR~ 72 (187)
T 3k9w_A 22 MVVAVYPG---TFDPLTRGHEDLVRRASSI---FDTLVVGVADSRAKK--PFFSLEERL 72 (187)
T ss_dssp CCEEEEEE---CCTTCCHHHHHHHHHHHHH---SSEEEEEEECCGGGC--CSSCHHHHH
T ss_pred cEEEEEEE---eCCcCcHHHHHHHHHHHHH---CCcEEEEEecCCccC--CCCCHHHHH
Confidence 36789999 4478999998777655444 333333345566651 125665544
No 79
>3f3m_A Phosphopantetheine adenylyltransferase; PPAT, coenzyme A BIO pathway, coenzyme A biosynthesis, nucleotidyltransferase; HET: PPS; 2.40A {Staphylococcus aureus} SCOP: c.26.1.0
Probab=38.28 E-value=47 Score=26.62 Aligned_cols=50 Identities=18% Similarity=0.238 Sum_probs=27.4
Q ss_pred CceEEEeccCCCCCCccchhhHHHHhHHHHHHcCCCcEEEEe-cChhhhhccCCCHHHHH
Q 025688 84 EKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQL-TDDEKCMWKNLSVEESQ 142 (249)
Q Consensus 84 k~~~iYtG~dPSg~sLHlGHlv~~~~l~~lQ~~g~~~v~i~I-aD~~k~~~r~l~~e~i~ 142 (249)
+++.+|.|-- +.+|.||+..+...+. .++. +++.+ .+|+| ....+.++-.
T Consensus 3 ~ki~i~~GsF---DPiH~GHl~i~~~a~~---~~d~-viv~v~~~p~K--~~~~~~~~R~ 53 (168)
T 3f3m_A 3 HTIAVIPGSF---DPITYGHLDIIERSTD---RFDE-IHVCVLKNSKK--EGTFSLEERM 53 (168)
T ss_dssp CCEEEEEECC---TTCCHHHHHHHHHHGG---GSSE-EEEEECC-------CCSCHHHHH
T ss_pred ceEEEEEEEc---CcCCHHHHHHHHHHHH---hCCE-EEEEEcCCCCC--CCCCCHHHHH
Confidence 5678888843 6799999877665433 3433 44444 45555 1225665544
No 80
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=37.88 E-value=13 Score=37.18 Aligned_cols=57 Identities=19% Similarity=0.263 Sum_probs=33.0
Q ss_pred HHHhhccccccCChhHHHHHHHcCCceEEEecc-CCCCCCccchhhHHHH---h-HHHHHHcCCCcEEEE
Q 025688 60 VFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGR-GPSSEALHLGHLVPFM---F-TKYLQDAFKVPLVIQ 124 (249)
Q Consensus 60 ~l~~Rgi~~~~~d~~~ll~~~e~~k~~~iYtG~-dPSg~sLHlGHlv~~~---~-l~~lQ~~g~~~v~i~ 124 (249)
...+.+++....+. -++++++++.+|. -||| .|||||+.... . .|+..-.|. .|...
T Consensus 16 ~W~~~~~f~~~~~~------~~~~~~~~i~~~~Py~nG-~lHiGH~~~~~~~D~i~R~~rm~G~-~V~~~ 77 (810)
T 1wkb_A 16 RWLEAKIFEPNIRD------KPKEKKFYITVAFPYLSG-HLHVGHARTYTIPDVIARFKRMQGY-NVLFP 77 (810)
T ss_dssp HHHHTTTTCCCGGG------SCGGGEEEEEECCCBTTS-CCBHHHHHHHHHHHHHHHHHHHHTC-EEECC
T ss_pred HHHhCCCcccCchh------cCCCCcEEEEeCCCCCCC-CCccccchhHHHHHHHHHHHHcCCC-ccCcC
Confidence 44566777543220 0124578888776 3466 89999988654 2 344444564 44443
No 81
>3jtz_A Integrase; four stranded beta-sheet, DNA binding protein; 1.30A {Yersinia pestis} PDB: 3rmp_A
Probab=37.53 E-value=23 Score=25.47 Aligned_cols=37 Identities=14% Similarity=0.241 Sum_probs=21.7
Q ss_pred CcEEEEecChhhhhccCCCHHHHHHHHHHHHHHHHHcCCCCCc
Q 025688 119 VPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTK 161 (249)
Q Consensus 119 ~~v~i~IaD~~k~~~r~l~~e~i~~~~~eni~~iiA~G~dp~k 161 (249)
..-.+-||..- .+|++++++.+ +.++..++.|+||+.
T Consensus 47 k~~~~~LG~yp-----~~sL~~AR~~a-~~~r~~l~~Gidp~~ 83 (88)
T 3jtz_A 47 KESRIALGAYP-----AISLSDARQQR-EGIRKMLALNINLEH 83 (88)
T ss_dssp EEEEEEEEETT-----TSCHHHHHHHH-HHHHHHHTCC-----
T ss_pred eEEEEEeECCC-----CCCHHHHHHHH-HHHHHHHHcCCCchh
Confidence 34445566542 37899999877 456678899999974
No 82
>2oho_A Glutamate racemase; isomerase; 2.25A {Streptococcus pyogenes m1 gas} PDB: 2ohg_A 2ohv_A*
Probab=32.88 E-value=1.3e+02 Score=25.51 Aligned_cols=64 Identities=8% Similarity=0.095 Sum_probs=41.1
Q ss_pred CCceEEE-eccCCCCCCccchhhHHHHhHHHHHHcCCCcEEEEecChhhhhccCCCHHHHHHHHHHHHHHHHHcCCC
Q 025688 83 GEKFYLY-TGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFD 158 (249)
Q Consensus 83 ~k~~~iY-tG~dPSg~sLHlGHlv~~~~l~~lQ~~g~~~v~i~IaD~~k~~~r~l~~e~i~~~~~eni~~iiA~G~d 158 (249)
++++.++ +|+++ +-.++.+.+..-...++..+|....-.-..+.+++.+...+.++.+.+.|.|
T Consensus 12 ~~~IGv~DsG~Gg------------ltv~~~i~~~~P~~~~iy~~D~~~~Pyg~~s~~~i~~~~~~~~~~L~~~g~d 76 (273)
T 2oho_A 12 TRPIGFLDSGVGG------------LTVVCELIRQLPHEKIVYIGDSARAPYGPRPKKQIKEYTWELVNFLLTQNVK 76 (273)
T ss_dssp CCCEEEEESSSTT------------HHHHHHHHHHCTTCCEEEEECGGGCCCTTSCHHHHHHHHHHHHHHHHTTTCS
T ss_pred CCcEEEEeCCCcH------------HHHHHHHHHHCCCCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC
Confidence 3578888 88884 2234555554433457778898632111257888988888888887777753
No 83
>4f3r_A Phosphopantetheine adenylyltransferase; phosphopantetheine adenylyltranferase; 2.25A {Coxiella burnetii}
Probab=31.86 E-value=88 Score=24.78 Aligned_cols=49 Identities=20% Similarity=0.295 Sum_probs=26.1
Q ss_pred ceEEEeccCCCCCCccchhhHHHHhHHHHHHcCCCcEEEEec-ChhhhhccCCCHHHHH
Q 025688 85 KFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLT-DDEKCMWKNLSVEESQ 142 (249)
Q Consensus 85 ~~~iYtG~dPSg~sLHlGHlv~~~~l~~lQ~~g~~~v~i~Ia-D~~k~~~r~l~~e~i~ 142 (249)
++.+|.|-- +.+|.||+-.+...+ +.++ .+++.++ |++|. ...+.++-.
T Consensus 6 ~i~i~~GsF---DPiH~GHl~li~~A~---~~~d-~viv~v~~~~~K~--~~~~~~~R~ 55 (162)
T 4f3r_A 6 PIAIYPGTF---DPLTNGHVDIIERAL---PLFN-KIIVACAPTSRKD--PHLKLEERV 55 (162)
T ss_dssp CEEEEEECC---TTCCHHHHHHHHHHG---GGCS-EEEEEECCC--------CCHHHHH
T ss_pred EEEEEEEEc---CCCCHHHHHHHHHHH---HHCC-cEEEEEecCCccC--CCCCHHHHH
Confidence 567888843 689999977665443 3344 3444544 55551 125555544
No 84
>1o6b_A Phosphopantetheine adenylyltransferase; structural genomics; HET: ADP; 2.20A {Bacillus subtilis} SCOP: c.26.1.3
Probab=30.27 E-value=82 Score=24.43 Aligned_cols=49 Identities=20% Similarity=0.222 Sum_probs=27.5
Q ss_pred ceEEEeccCCCCCCccchhhHHHHhHHHHHHcCCCcEEEEecC-hhhhhccCCCHHHHH
Q 025688 85 KFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTD-DEKCMWKNLSVEESQ 142 (249)
Q Consensus 85 ~~~iYtG~dPSg~sLHlGHlv~~~~l~~lQ~~g~~~v~i~IaD-~~k~~~r~l~~e~i~ 142 (249)
++.++.|-- +.+|+||+.-+..++.. .+. +++++++ |++ ....+.++-.
T Consensus 3 ~i~i~~GsF---DpvH~GH~~li~~a~~~---~d~-v~v~~~~~p~k--~~l~~~~~R~ 52 (169)
T 1o6b_A 3 SIAVCPGSF---DPVTYGHLDIIKRGAHI---FEQ-VYVCVLNNSSK--KPLFSVEERC 52 (169)
T ss_dssp CEEEEEECC---TTCCHHHHHHHHHHHHH---SSE-EEEEECCCCSS--CCSSCHHHHH
T ss_pred cEEEEEEee---CCCCHHHHHHHHHHHHh---CCE-EEEEECCCCcc--CCCCCHHHHH
Confidence 467777744 67999998766654333 222 4555554 444 1224555443
No 85
>2vvt_A Glutamate racemase; isomerase, peptidoglycan synthesis, cell WALL biogenesis/degradation, cell shape, benzyl purine, MURI inhibitor; HET: I24 DGL; 1.65A {Enterococcus faecalis} PDB: 2jfp_A* 2jfo_A* 2jfu_A 2jfv_A* 2jfw_A*
Probab=29.75 E-value=1.3e+02 Score=25.95 Aligned_cols=64 Identities=19% Similarity=0.211 Sum_probs=42.2
Q ss_pred CCceEEE-eccCCCCCCccchhhHHHHhHHHHHHcCCCcEEEEecChhhhhccCCCHHHHHHHHHHHHHHHHHcCCC
Q 025688 83 GEKFYLY-TGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFD 158 (249)
Q Consensus 83 ~k~~~iY-tG~dPSg~sLHlGHlv~~~~l~~lQ~~g~~~v~i~IaD~~k~~~r~l~~e~i~~~~~eni~~iiA~G~d 158 (249)
++++.++ +|+++ +-.++.+.+..-...++.++|....-.-..+.+++.+.+.+.++.+.+.|.|
T Consensus 24 ~~~IGvfDsG~Gg------------ltv~~~i~~~~P~~~~iy~~D~~~~pyG~~s~~~i~~~~~~~~~~L~~~g~d 88 (290)
T 2vvt_A 24 QEAIGLIDSGVGG------------LTVLKEALKQLPNERLIYLGDTARCPYGPRPAEQVVQFTWEMADFLLKKRIK 88 (290)
T ss_dssp GSCEEEEESSSTT------------HHHHHHHHHHCTTSCEEEEECTTTCCCTTSCHHHHHHHHHHHHHHHHTTTCS
T ss_pred CCcEEEEeCCCcH------------HHHHHHHHHHCCCccEEEecccccCCCCCCCHHHHHHHHHHHHHHHHHCCCC
Confidence 4588999 88883 2334555554433456667998742111267899999888888887777753
No 86
>3nbk_A Phosphopantetheine adenylyltransferase; PPAT, PHP; HET: PNS; 1.58A {Mycobacterium tuberculosis} PDB: 3nba_A* 3pnb_A* 4e1a_A 3lcj_A 3rba_A* 1tfu_A* 3rff_A 3rhs_A* 3uc5_A*
Probab=28.29 E-value=78 Score=25.75 Aligned_cols=53 Identities=17% Similarity=0.226 Sum_probs=32.3
Q ss_pred CCceEEEeccCCCCCCccchhhHHHHhHHHHHHcCCCcEEEEec-ChhhhhccCCCHHHHHHH
Q 025688 83 GEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLT-DDEKCMWKNLSVEESQRL 144 (249)
Q Consensus 83 ~k~~~iYtG~dPSg~sLHlGHlv~~~~l~~lQ~~g~~~v~i~Ia-D~~k~~~r~l~~e~i~~~ 144 (249)
+.++.+|.|-- +.+|.||+-.+...+.+ ++ .+++.++ +++|. ...+.++-.++
T Consensus 20 ~mki~i~~GsF---DPiH~GHl~ii~~A~~~---~D-~Viv~v~~np~K~--~~~s~eeR~~m 73 (177)
T 3nbk_A 20 HMTGAVCPGSF---DPVTLGHVDIFERAAAQ---FD-EVVVAILVNPAKT--GMFDLDERIAM 73 (177)
T ss_dssp CCCEEEEEECC---TTCCHHHHHHHHHHHHH---SS-EEEEEECCCTTSC--CSSCHHHHHHH
T ss_pred CCEEEEEEEee---CCCCHHHHHHHHHHHHH---CC-EEEEEEcCCCCCC--CCCCHHHHHHH
Confidence 55788999943 67999998777654443 33 3444444 55552 22566665533
No 87
>3h05_A Uncharacterized protein VPA0413; nucleotidylyl, transferase, MCSG, midwest center for structu genomics, PSI; 1.65A {Vibrio parahaemolyticus}
Probab=27.95 E-value=77 Score=25.42 Aligned_cols=53 Identities=13% Similarity=0.102 Sum_probs=27.0
Q ss_pred ceEEEeccCCCCCCccchhhHHHHhHHHHHHcCCCcEEEEecChhhhhccCCCHHHHHHHH
Q 025688 85 KFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLA 145 (249)
Q Consensus 85 ~~~iYtG~dPSg~sLHlGHlv~~~~l~~lQ~~g~~~v~i~IaD~~k~~~r~l~~e~i~~~~ 145 (249)
++.+|.| |-+.+|.||+..+..+ +..+ .|+++++-.++.-....+.++-.++.
T Consensus 3 ~igi~gG---sFdPih~GHl~i~~a~----~~~d-~v~~~p~~~~~~k~~~~~~~~R~~m~ 55 (177)
T 3h05_A 3 KIAIFGS---AFNPPSLGHKSVIESL----SHFD-LVLLEPSIAHAWGKNMLDYPIRCKLV 55 (177)
T ss_dssp EEEEEEE---CCSSCCHHHHHHHTTC----TTSS-EEEEEECC-------CCCHHHHHHHH
T ss_pred EEEEEEe---ccchhhHHHHHHHHHH----HHCC-EEEEEECCCCCCCCCCCCHHHHHHHH
Confidence 5678887 3367999998877522 1233 45555553332211124555544333
No 88
>3nd5_A Phosphopantetheine adenylyltransferase; PPAT, coenzyme A BIO pathway; 2.30A {Enterococcus faecalis} SCOP: c.26.1.0 PDB: 3nd6_A* 3nd7_A*
Probab=27.54 E-value=1.2e+02 Score=24.31 Aligned_cols=49 Identities=22% Similarity=0.307 Sum_probs=26.3
Q ss_pred ceEEEeccCCCCCCccchhhHHHHhHHHHHHcCCCcEEEEecC-hhhhhccCCCHHHHH
Q 025688 85 KFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTD-DEKCMWKNLSVEESQ 142 (249)
Q Consensus 85 ~~~iYtG~dPSg~sLHlGHlv~~~~l~~lQ~~g~~~v~i~IaD-~~k~~~r~l~~e~i~ 142 (249)
++.+|.|- =+.+|.||+-.+...+ +.++ .+++.++. ++|. ...+.++-.
T Consensus 3 ~i~i~~Gs---FDPiH~GHl~i~~~a~---~~~D-~viv~v~~~~~K~--~~~~~~~R~ 52 (171)
T 3nd5_A 3 KIALFPGS---FDPMTNGHLNLIERSA---KLFD-EVIIGVFINTSKQ--TLFTPEEKK 52 (171)
T ss_dssp CEEEEEEC---CTTCCHHHHHHHHHHH---TTCS-EEEEEEEC--------CCCHHHHH
T ss_pred eEEEEEEE---ccccCHHHHHHHHHHH---HHCC-CeEEEEecCCCCC--CCCCHHHHH
Confidence 35677773 3679999987766543 3343 34454544 4552 225666544
No 89
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=26.89 E-value=99 Score=27.16 Aligned_cols=39 Identities=21% Similarity=0.134 Sum_probs=23.6
Q ss_pred CceEEEeccCCCCCCccchhhHHHHhHHHHHHcCCCcEEEEecCh
Q 025688 84 EKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDD 128 (249)
Q Consensus 84 k~~~iYtG~dPSg~sLHlGHlv~~~~l~~lQ~~g~~~v~i~IaD~ 128 (249)
+++.+|.|-- +.+|+||+.-+..... .++..+++.-+++
T Consensus 2 ~~~~i~~GtF---dP~h~GHl~~~~~a~~---~~d~v~v~~~~~~ 40 (365)
T 1lw7_A 2 KKVGVIFGKF---YPVHTGHINMIYEAFS---KVDELHVIVCSDT 40 (365)
T ss_dssp CCEEEEEECC---SSCCHHHHHHHHHHHT---TCSEEEEEEEECH
T ss_pred CcEEEEEEee---CCCCHHHHHHHHHHHH---HCCEEEEEECCCC
Confidence 4677888743 6799999876654433 3443334444454
No 90
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=26.74 E-value=16 Score=20.22 Aligned_cols=17 Identities=35% Similarity=0.723 Sum_probs=13.2
Q ss_pred HHHHHHHhCCCCCCHHH
Q 025688 30 YDKLIDKFGCQRLDQSL 46 (249)
Q Consensus 30 y~kl~~~fg~~~i~~~~ 46 (249)
+-|||++||-+.|+-..
T Consensus 3 fgklikkfgrkaisyav 19 (26)
T 2g9p_A 3 FGKLIKKFGRKAISYAV 19 (26)
T ss_dssp HHHHHHHHTSHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHH
Confidence 56999999977777643
No 91
>2qjt_B Nicotinamide-nucleotide adenylyltransferase; two individual domains, hydrolase; HET: AMP; 2.30A {Francisella tularensis} PDB: 2r5w_B
Probab=25.83 E-value=74 Score=27.53 Aligned_cols=55 Identities=18% Similarity=0.332 Sum_probs=30.1
Q ss_pred ceEEEeccCCCCCCccchhhHHHHhHHHHHHcCCCcEEEEe-c-ChhhhhccCCCHHHHHHHHH
Q 025688 85 KFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQL-T-DDEKCMWKNLSVEESQRLAR 146 (249)
Q Consensus 85 ~~~iYtG~dPSg~sLHlGHlv~~~~l~~lQ~~g~~~v~i~I-a-D~~k~~~r~l~~e~i~~~~~ 146 (249)
++.+|.|-- +.+|+||+.-+.....+ ++ .+++++ + ++++......+.++-.++.+
T Consensus 8 ~~~i~~GtF---dP~h~GHl~~~~~a~~~---~d-~~~~~v~~~~~~~~~~~~~~~~~R~~m~~ 64 (352)
T 2qjt_B 8 DISVFIGRF---QPFHKGHLHNIIIALQN---SK-KVIINIGSCFNTPNIKNPFSFEQRKQMIE 64 (352)
T ss_dssp EEEEEEECC---TTCCHHHHHHHHHHHHS---EE-EEEEEEEEESCCCCSSSCSCHHHHHHHHH
T ss_pred cEEEEEEec---CCCChHHHHHHHHHHHh---CC-cEEEEECCCCCCcccCCCCCHHHHHHHHH
Confidence 567888832 46899998877654433 43 334443 3 44432222356666553333
No 92
>1cv8_A Staphopain; cysteine protease, thiol protease, papain family; HET: E64; 1.75A {Staphylococcus aureus} SCOP: d.3.1.1
Probab=25.53 E-value=46 Score=27.31 Aligned_cols=78 Identities=17% Similarity=0.229 Sum_probs=47.5
Q ss_pred cccHHHHHHHhCCCCCCHHHHHHHHHhcCCChhHHHhh----cc----ccccCChhHHHHHHHcCCceEEEeccCCCCCC
Q 025688 27 KIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRR----GV----FFAHRDLNDILDAYEKGEKFYLYTGRGPSSEA 98 (249)
Q Consensus 27 ~~dy~kl~~~fg~~~i~~~~~~r~~~~~~~~~~~l~~R----gi----~~~~~d~~~ll~~~e~~k~~~iYtG~dPSg~s 98 (249)
...=..+|+.+=-. .+++. |. .||..++.+++= |- ...--+++++..+..+++++.+.+..-=++..
T Consensus 41 ~~~A~~imr~~yPn-~S~~~---l~-~~~~t~~e~iky~~s~g~~~~~~n~~ls~~eV~~~~~~nk~i~i~~~~ve~~~~ 115 (174)
T 1cv8_A 41 KYHAEAVMRFLHPN-LQGQQ---FQ-FTGLTPREMIYFGQTQGRSPQLLNRMTTYNEVDNLTKNNKGIAILGSRVESRNG 115 (174)
T ss_dssp CCCHHHHHHHHCSS-CCHHH---HH-HCCCCHHHHHHHHHHTTCCCEEESSCCCHHHHHHHHHTTCCEEEEEEESSCBTT
T ss_pred cCCHHHHHHHHCCC-CCHHH---Hh-hcCCCHHHHHHHHHHcCCChhhhcCCCCHHHHHHHHhcCCceEEEcccccCCCC
Confidence 34445666665311 23322 22 566666665542 11 12334789999999999999999887434445
Q ss_pred ccchhhHHHHh
Q 025688 99 LHLGHLVPFMF 109 (249)
Q Consensus 99 LHlGHlv~~~~ 109 (249)
.|.||.+.++-
T Consensus 116 ~~~gHAlav~G 126 (174)
T 1cv8_A 116 MHAGHAMAVVG 126 (174)
T ss_dssp BCCEEEEEEEE
T ss_pred CCCceeEEEEe
Confidence 89999877653
No 93
>3glv_A Lipopolysaccharide core biosynthesis protein; structural GEN PSI, MCSG, protein structure initiative; HET: AMP; 1.99A {Thermoplasma volcanium GSS1}
Probab=25.00 E-value=66 Score=24.58 Aligned_cols=39 Identities=26% Similarity=0.212 Sum_probs=22.8
Q ss_pred ceEEEeccCCCCCCccchhhHHHHhHHHHHHcCCCcEEEEecChh
Q 025688 85 KFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDE 129 (249)
Q Consensus 85 ~~~iYtG~dPSg~sLHlGHlv~~~~l~~lQ~~g~~~v~i~IaD~~ 129 (249)
+..++.|.- +.+|+||.--+..++ +.++..++++-.|++
T Consensus 3 ~~v~~~G~F---D~vH~GH~~li~~a~---~~~~~~~v~v~~~~~ 41 (143)
T 3glv_A 3 IRVMATGVF---DILHLGHIHYLKESK---KLGDELVVVVARDST 41 (143)
T ss_dssp CEEEEEECC---SSCCHHHHHHHHHHH---TTSSEEEEEECCHHH
T ss_pred eEEEEEeec---CCCCHHHHHHHHHHH---HhCCCcEEEEECCcc
Confidence 456666754 689999977666543 334333333344566
No 94
>1coz_A Protein (glycerol-3-phosphate cytidylyltransferase); HET: CTP; 2.00A {Bacillus subtilis} SCOP: c.26.1.2 PDB: 1n1d_A*
Probab=24.75 E-value=64 Score=23.78 Aligned_cols=37 Identities=22% Similarity=0.171 Sum_probs=21.5
Q ss_pred eEEEeccCCCCCCccchhhHHHHhHHHHHHcCCCcEEEEecCh
Q 025688 86 FYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDD 128 (249)
Q Consensus 86 ~~iYtG~dPSg~sLHlGHlv~~~~l~~lQ~~g~~~v~i~IaD~ 128 (249)
..++.|.- +.+|.||+--+..+ .+.++..++++-.|+
T Consensus 3 ~~~~~G~F---Dp~H~GH~~li~~a---~~~~d~~~v~v~~~~ 39 (129)
T 1coz_A 3 KVITYGTF---DLLHWGHIKLLERA---KQLGDYLVVAISTDE 39 (129)
T ss_dssp EEEEEECC---CSCCHHHHHHHHHH---HTTSSEEEEEEECHH
T ss_pred EEEEEEeC---CCCCHHHHHHHHHH---HHhCCCeEEEEECCH
Confidence 45666633 67999997765544 344444344444565
No 95
>1zuw_A Glutamate racemase 1; (R)-glutamate, peptidoglycan biosynthesi isomerase; HET: DGL; 1.75A {Bacillus subtilis}
Probab=24.62 E-value=2.1e+02 Score=24.26 Aligned_cols=52 Identities=13% Similarity=0.201 Sum_probs=34.2
Q ss_pred HHhHHHHHHcCCCcEEEEecChhhhhccCCCHHHHHHHHHHHHHHHHH-cCCC
Q 025688 107 FMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIA-CGFD 158 (249)
Q Consensus 107 ~~~l~~lQ~~g~~~v~i~IaD~~k~~~r~l~~e~i~~~~~eni~~iiA-~G~d 158 (249)
+-.++.+.+..-..-++.++|....-.-..+.+++.+.+.+.++.+.+ .|.|
T Consensus 16 ltv~~~i~~~lP~~~~iy~~D~~~~PyG~~s~~~i~~~~~~~~~~L~~~~g~d 68 (272)
T 1zuw_A 16 LTVAKEIMRQLPKENIIYVGDTKRCPYGPRPEEEVLQYTWELTNYLLENHHIK 68 (272)
T ss_dssp HHHHHHHHHHSTTCCEEEEECGGGCCCSSSCHHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHhCCCCcEEEeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhcCCC
Confidence 334556655543445778899863211125788999988888888888 7863
No 96
>2b7l_A Glycerol-3-phosphate cytidylyltransferase; rossmann fold; 3.00A {Staphylococcus aureus}
Probab=23.89 E-value=74 Score=23.58 Aligned_cols=37 Identities=22% Similarity=0.233 Sum_probs=21.3
Q ss_pred eEEEeccCCCCCCccchhhHHHHhHHHHHHcCCCcEEEEecCh
Q 025688 86 FYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDD 128 (249)
Q Consensus 86 ~~iYtG~dPSg~sLHlGHlv~~~~l~~lQ~~g~~~v~i~IaD~ 128 (249)
..++.|.- +.+|.||.--+..++ +.++..++++-.|+
T Consensus 3 ~~~~~G~F---Dp~H~GH~~li~~a~---~~~~~~~v~v~~~~ 39 (132)
T 2b7l_A 3 RVITYGTY---DLLHYGHIELLRRAR---EMGDYLIVALSTDE 39 (132)
T ss_dssp EEEEEECC---CSCCHHHHHHHHHHH---HTSSEEEEEEECHH
T ss_pred EEEEeeec---CcCCHHHHHHHHHHH---HhCCcEEEEEECCH
Confidence 45666643 679999977655443 33433334444555
No 97
>1vlh_A Phosphopantetheine adenylyltransferase; TM0741, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: PNS; 2.20A {Thermotoga maritima} SCOP: c.26.1.3
Probab=22.85 E-value=1.2e+02 Score=23.83 Aligned_cols=51 Identities=20% Similarity=0.262 Sum_probs=27.8
Q ss_pred CceEEEeccCCCCCCccchhhHHHHhHHHHHHcCCCcEEEEecChhhhhccCCCHHHHH
Q 025688 84 EKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQ 142 (249)
Q Consensus 84 k~~~iYtG~dPSg~sLHlGHlv~~~~l~~lQ~~g~~~v~i~IaD~~k~~~r~l~~e~i~ 142 (249)
.-+.+|.|- -+.+|.||+--+... .+.++..+++.-+++.+. ...+.++-.
T Consensus 12 ~~i~i~~Gs---FdP~H~GHl~l~~~A---~~~~D~viv~v~~~~~kk--~~~~~~~R~ 62 (173)
T 1vlh_A 12 HMKAVYPGS---FDPITLGHVDIIKRA---LSIFDELVVLVTENPRKK--CMFTLEERK 62 (173)
T ss_dssp -CEEEEEEC---CTTCCHHHHHHHHHH---HTTCSEEEEEEECCTTCC--CSSCHHHHH
T ss_pred ceEEEEEEE---ECcCcHHHHHHHHHH---HHHCCEEEEEEeCCCCCC--CCCCHHHHH
Confidence 346777773 357899997766543 344543333444555432 225665544
No 98
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=22.62 E-value=82 Score=22.58 Aligned_cols=33 Identities=12% Similarity=0.134 Sum_probs=27.0
Q ss_pred hhHHHhhccccccCChhHHHHHHHcCCceEEEeccCCCC
Q 025688 58 PHVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSS 96 (249)
Q Consensus 58 ~~~l~~Rgi~~~~~d~~~ll~~~e~~k~~~iYtG~dPSg 96 (249)
+..|.++|+|...++.. ..++++++..-++||-
T Consensus 57 Lk~LE~kglIkr~~~~~------~~~rKvy~Ly~l~Ps~ 89 (91)
T 2dk5_A 57 LKNLESKKLIKAVKSVA------ASKKKVYMLYNLSGPS 89 (91)
T ss_dssp HHHHHHTTSEEEECCSS------CSSCCEEEESSSCCCC
T ss_pred HHHHHHCCCEEEecCCC------CCCcEEEEEeccCcCC
Confidence 57899999999887754 3478899999999985
No 99
>2ejc_A Pantoate--beta-alanine ligase; X-RAY diffraction, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Thermotoga maritima}
Probab=22.44 E-value=56 Score=28.64 Aligned_cols=26 Identities=23% Similarity=0.188 Sum_probs=17.1
Q ss_pred CceEEEeccCCCCCCccchhhHHHHhHHH
Q 025688 84 EKFYLYTGRGPSSEALHLGHLVPFMFTKY 112 (249)
Q Consensus 84 k~~~iYtG~dPSg~sLHlGHlv~~~~l~~ 112 (249)
++-.+++| |=+-+|.||.--+-..+.
T Consensus 21 g~~V~~vg---tfdgLH~GH~sLI~~A~~ 46 (280)
T 2ejc_A 21 KKTIGFVP---TMGYLHEGHLSLVRRARA 46 (280)
T ss_dssp TCCEEEEE---ECSCCCHHHHHHHHHHHH
T ss_pred CCEEEEEc---CCccccHHHHHHHHHHHH
Confidence 33355565 558999999776655543
No 100
>2jfq_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan synthesis, peptidoglycan biosynthesis; HET: DGL; 2.15A {Staphylococcus aureus}
Probab=22.09 E-value=2e+02 Score=24.67 Aligned_cols=64 Identities=14% Similarity=0.233 Sum_probs=41.0
Q ss_pred CCceEEE-eccCCCCCCccchhhHHHHhHHHHHHcCCCcEEEEecChhhhhccCCCHHHHHHHHHHHHHHHHHcCCC
Q 025688 83 GEKFYLY-TGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFD 158 (249)
Q Consensus 83 ~k~~~iY-tG~dPSg~sLHlGHlv~~~~l~~lQ~~g~~~v~i~IaD~~k~~~r~l~~e~i~~~~~eni~~iiA~G~d 158 (249)
++++.++ +|++ | +-.++.+.+..-...++.++|....-.-..+.+++.+.+.+.++.+.+.|.|
T Consensus 22 ~~~IGvfDsG~G--g----------ltv~~~i~~~~P~~~~iy~~D~~~~Pyg~~s~~~i~~~~~~~~~~L~~~g~d 86 (286)
T 2jfq_A 22 NKPIGVIDSGVG--G----------LTVAKEIMRQLPNETIYYLGDIGRCPYGPRPGEQVKQYTVEIARKLMEFDIK 86 (286)
T ss_dssp CSCEEEEESSST--T----------HHHHHHHHHHCTTCCEEEEECTTTCCCTTSCHHHHHHHHHHHHHHHTTSCCS
T ss_pred CCcEEEEeCCCC--c----------HHHHHHHHHHCCCccEEEeccCCCCCcCCCCHHHHHHHHHHHHHHHHHCCCC
Confidence 3578888 7776 2 3334555554434457778887632111257889998888888777777753
Done!