RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 025688
(249 letters)
>gnl|CDD|178104 PLN02486, PLN02486, aminoacyl-tRNA ligase.
Length = 383
Score = 495 bits (1275), Expect = e-178
Identities = 202/235 (85%), Positives = 217/235 (92%), Gaps = 4/235 (1%)
Query: 15 QVVSPWEVSS--SGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRD 72
QVV+PWEVS+ GKIDYDKL+DKFGCQRLD SL+DRV+RLTGRP H FLRRGVFFAHRD
Sbjct: 1 QVVTPWEVSAKDGGKIDYDKLVDKFGCQRLDPSLIDRVERLTGRPAHPFLRRGVFFAHRD 60
Query: 73 LNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCM 132
L +ILDAYEKGEKFYLYTGRGPSSEALHLGHL+PFMFTKYLQDAFKVPLVIQLTDDEK +
Sbjct: 61 LEEILDAYEKGEKFYLYTGRGPSSEALHLGHLIPFMFTKYLQDAFKVPLVIQLTDDEKFL 120
Query: 133 WKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVV 192
WKNLSVEESQRLARENAKDIIACGFDV +TFIFSDFDYVGGAFYKNMVK+AKCVT N+V
Sbjct: 121 WKNLSVEESQRLARENAKDIIACGFDVERTFIFSDFDYVGGAFYKNMVKIAKCVTLNQVR 180
Query: 193 GIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQVGSPFF 247
GIFGF+GED+IGK+SFP VQA PSFPSSFPHLF GKD LRCLIPCAIDQ P+F
Sbjct: 181 GIFGFSGEDNIGKISFPAVQAAPSFPSSFPHLFGGKDKLRCLIPCAIDQ--DPYF 233
>gnl|CDD|237037 PRK12285, PRK12285, tryptophanyl-tRNA synthetase; Reviewed.
Length = 368
Score = 210 bits (537), Expect = 1e-66
Identities = 85/231 (36%), Positives = 125/231 (54%), Gaps = 19/231 (8%)
Query: 12 EREQVVSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHR 71
E E +V+PWEVS G +DYDKL ++FG + + L + PH +RRG+ F HR
Sbjct: 1 EDEFMVTPWEVS--GIVDYDKLFEEFGIEPFTEVL-PELPE-----PHPLMRRGIIFGHR 52
Query: 72 DLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKC 131
D + IL+AY G+ F +YTG PS +H+GH + F K+ Q+ F + I + DDE
Sbjct: 53 DYDKILEAYRNGKPFAVYTGFMPSGP-MHIGHKMVFDELKWHQE-FGANVYIPIADDEAY 110
Query: 132 MWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNM-VKVAKCVTYNK 190
+ LS EE++ A E D+IA GFD KT I+ + ++ ++AK V +++
Sbjct: 111 AARGLSWEETREWAYEYILDLIALGFDPDKTEIYFQSEN---IKVYDLAFELAKKVNFSE 167
Query: 191 VVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQ 241
+ I+GFTGE +IG + +P QA P L G L+P IDQ
Sbjct: 168 LKAIYGFTGETNIGHIFYPATQAADIL---HPQLEEGP--KPTLVPVGIDQ 213
>gnl|CDD|173903 cd00806, TrpRS_core, catalytic core domain of tryptophanyl-tRNA
synthetase. Tryptophanyl-tRNA synthetase (TrpRS)
catalytic core domain. TrpRS is a homodimer which
attaches Tyr to the appropriate tRNA. TrpRS is a class I
tRNA synthetases, so it aminoacylates the 2'-OH of the
nucleotide at the 3' end of the tRNA. The core domain is
based on the Rossman fold and is responsible for the
ATP-dependent formation of the enzyme bound
aminoacyl-adenylate. It contains class I characteristic
HIGH and KMSKS motifs, which are involved in ATP
binding.
Length = 280
Score = 145 bits (367), Expect = 2e-42
Identities = 49/163 (30%), Positives = 73/163 (44%), Gaps = 22/163 (13%)
Query: 87 YLYTGRGPSSEALHLGHLVP-FMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLA 145
+ +G PS +LHLGH + F F +LQ+A L + D K L EE ++
Sbjct: 1 RVLSGIQPSG-SLHLGHYLGAFRFWVWLQEA-GYELFFFIADLHALTVKQLDPEELRQNT 58
Query: 146 RENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFT------G 199
RENAKD +ACG D K+ IF D Y+ ++ VT+ ++ + GF
Sbjct: 59 RENAKDYLACGLDPEKSTIFFQSDV--PEHYELAWLLSCVVTFGELERMTGFKDKSAQGE 116
Query: 200 EDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQV 242
+IG +++P +QA CL+P IDQ
Sbjct: 117 SVNIGLLTYPVLQAADILLYKA-----------CLVPVGIDQD 148
>gnl|CDD|232888 TIGR00233, trpS, tryptophanyl-tRNA synthetase. This model
represents tryptophanyl-tRNA synthetase. Some members of
the family have a pfam00458 domain amino-terminal to the
region described by this model [Protein synthesis, tRNA
aminoacylation].
Length = 327
Score = 135 bits (341), Expect = 5e-38
Identities = 51/164 (31%), Positives = 73/164 (44%), Gaps = 22/164 (13%)
Query: 84 EKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQR 143
+KF + TG PS +HLGH + + TK+LQ F V L I + D K ++ R
Sbjct: 1 KKFRVLTGIQPSG-KMHLGHYLGAIQTKWLQ-QFGVELFICIADLHAITVKQTD-PDALR 57
Query: 144 LAREN-AKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDH 202
ARE A D +A G D KTFIF DY Y+ ++ VT+ ++ + F +
Sbjct: 58 KAREELAADYLAVGLDPEKTFIFLQSDY--PEHYELAWLLSCQVTFGELKRMTQFKDKSQ 115
Query: 203 -----IGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQ 241
IG +S+P +QA L+P IDQ
Sbjct: 116 AENVPIGLLSYPVLQAADILLYQAD-----------LVPVGIDQ 148
>gnl|CDD|223258 COG0180, TrpS, Tryptophanyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 314
Score = 112 bits (283), Expect = 1e-29
Identities = 35/169 (20%), Positives = 63/169 (37%), Gaps = 22/169 (13%)
Query: 81 EKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEE 140
E +KF + +G PS + LHLG+ + + L + D + EE
Sbjct: 1 ENMKKFRVLSGIQPSGK-LHLGNYLGAIRNWVLLQEEYYECFFFIADLHAITVRQDPTEE 59
Query: 141 S-QRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTG 199
++ RE A D +A G D K+ IF + + ++ + ++ + F
Sbjct: 60 DLRQATREVAADYLAVGLDPEKSTIFLQSEV--PEHAELAWLLSCVTNFGELERMTQFKD 117
Query: 200 ED-------HIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQ 241
+ IG +++P +QA L+ L+P DQ
Sbjct: 118 KSAKKGESIPIGLLTYPVLQAADIL------LYQA-----TLVPVGEDQ 155
>gnl|CDD|216003 pfam00579, tRNA-synt_1b, tRNA synthetases class I (W and Y).
Length = 291
Score = 48.0 bits (115), Expect = 1e-06
Identities = 29/97 (29%), Positives = 40/97 (41%), Gaps = 14/97 (14%)
Query: 82 KGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVI-----QLTDDEKCMWKNL 136
K +YTG P+ LHLG+LVP M Q A + + D +
Sbjct: 2 KERPLRVYTGFDPTGP-LHLGYLVPLMKLVQFQQAGHEVFFLIGDLTAIIGD-----PSK 55
Query: 137 SVEESQRLAR---ENAKDIIACGFDVTKTFIFSDFDY 170
S E ENAK +ACG D K+ I ++ D+
Sbjct: 56 SEERKLLSREEVLENAKAQLACGLDPEKSEIVNNSDW 92
>gnl|CDD|232889 TIGR00234, tyrS, tyrosyl-tRNA synthetase. This tyrosyl-tRNA
synthetase model starts picking up tryptophanyl-tRNA
synthetases at scores of 0 and below. The proteins found
by this model have a deep split between two groups. One
group contains bacterial and organellar eukaryotic
examples. The other contains archaeal and cytosolic
eukaryotic examples [Protein synthesis, tRNA
aminoacylation].
Length = 377
Score = 47.4 bits (113), Expect = 3e-06
Identities = 36/138 (26%), Positives = 63/138 (45%), Gaps = 12/138 (8%)
Query: 62 LRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDA-FKVP 120
+RG+ + ++L K LY G P++ +LHLGHLVP + + Q A +V
Sbjct: 9 KKRGLEVQVPEEEELLK--LLERKIKLYVGFDPTAPSLHLGHLVPLLKLRDFQQAGHEVI 66
Query: 121 LVI-----QLTD--DEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGG 173
+++ + D + K L+ EE Q A EN K IA D K ++ +++
Sbjct: 67 VLLGDATALIGDPSGKSEERKLLTREEVQENA-ENIKKQIARFLDFEKAKFVNNSEWLLK 125
Query: 174 AFYKNMV-KVAKCVTYNK 190
Y + + + K + N+
Sbjct: 126 LNYIDFIRDLGKIFSVNR 143
>gnl|CDD|223240 COG0162, TyrS, Tyrosyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 401
Score = 44.1 bits (105), Expect = 3e-05
Identities = 30/130 (23%), Positives = 53/130 (40%), Gaps = 19/130 (14%)
Query: 75 DILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDA-FKVPLVI-----QLTDD 128
+ L + +Y G P++ +LHLGHLVP M + QDA K ++I + D
Sbjct: 22 EELRKLLEEGPLRVYIGFDPTAPSLHLGHLVPLMKLRRFQDAGHKPIVLIGDATAMIGD- 80
Query: 129 EKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGA-FYKNM------VK 181
+ EE + L RE + F+ + ++V + + K +
Sbjct: 81 -----PSGKSEERKLLTRETVLENAETIKKQLGKFLDNKAEFVNNSDWLKKLNYLDFLRD 135
Query: 182 VAKCVTYNKV 191
V K + N++
Sbjct: 136 VGKHFSVNRM 145
>gnl|CDD|237360 PRK13354, PRK13354, tyrosyl-tRNA synthetase; Provisional.
Length = 410
Score = 42.2 bits (100), Expect = 1e-04
Identities = 21/60 (35%), Positives = 33/60 (55%)
Query: 64 RGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVI 123
RG D + + ++G+ LY G P++ +LH+GHLVP M K QDA P+++
Sbjct: 12 RGAINQETDEEKLRKSLKEGKPLTLYLGFDPTAPSLHIGHLVPLMKLKRFQDAGHRPVIL 71
>gnl|CDD|235645 PRK05912, PRK05912, tyrosyl-tRNA synthetase; Validated.
Length = 408
Score = 42.0 bits (100), Expect = 2e-04
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 64 RGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDA 116
RG+ D + L+ E +Y G P++ +LHLGHLVP + + QDA
Sbjct: 13 RGLIEQITDEEE-LEEKLAKEPLRIYLGFDPTAPSLHLGHLVPLLKLRRFQDA 64
>gnl|CDD|236286 PRK08560, PRK08560, tyrosyl-tRNA synthetase; Validated.
Length = 329
Score = 41.0 bits (97), Expect = 3e-04
Identities = 44/150 (29%), Positives = 68/150 (45%), Gaps = 29/150 (19%)
Query: 81 EKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDA-FKVPLVIQLTD-----DEKCMWK 134
E E+ Y G PS + +HLGHL+ LQ A FKV + L D ++K
Sbjct: 26 ESKEEPKAYIGFEPSGK-IHLGHLLTMNKLADLQKAGFKV--TVLLADWHAYLNDKG--- 79
Query: 135 NLSVEESQRLARENAKDIIACGFDVTKT-FIF-SDF----DYVGGAFYKNMVKVAKCVTY 188
+EE +++A N K A G D KT F+ S+F +Y ++K+AK T
Sbjct: 80 --DLEEIRKVAEYNKKVFEALGLDPDKTEFVLGSEFQLDKEYWL-----LVLKLAKNTTL 132
Query: 189 NKV---VGIFGFTGEDH-IGKVSFPPVQAV 214
+ + I G E+ + K+ +P +Q
Sbjct: 133 ARARRSMTIMGRRMEEPDVSKLVYPLMQVA 162
>gnl|CDD|173902 cd00805, TyrRS_core, catalytic core domain of tyrosinyl-tRNA
synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic
core domain. TyrRS is a homodimer which attaches Tyr to
the appropriate tRNA. TyrRS is a class I tRNA
synthetases, so it aminoacylates the 2'-OH of the
nucleotide at the 3' end of the tRNA. The core domain is
based on the Rossman fold and is responsible for the
ATP-dependent formationof the enzyme bound
aminoacyl-adenylate. It contains the class I
characteristic HIGH and KMSKS motifs, which are involved
in ATP binding.
Length = 269
Score = 38.0 bits (89), Expect = 0.002
Identities = 29/114 (25%), Positives = 54/114 (47%), Gaps = 10/114 (8%)
Query: 88 LYTGRGPSSEALHLGHLVPFMFTKYLQDA-FKVPLVI-----QLTD--DEKCMWKNLSVE 139
+Y G P++ +LHLGHLVP M + Q A +V ++I + D + K L +E
Sbjct: 3 VYIGFDPTAPSLHLGHLVPLMKLRDFQQAGHEVIVLIGDATAMIGDPSGKSEERKLLDLE 62
Query: 140 ESQRLARENAKDIIACG-FDVTKTFIFSD-FDYVGGAFYKNMVKVAKCVTYNKV 191
+ A+ K + A F + F + D++ + + +++ K T N++
Sbjct: 63 LIRENAKYYKKQLKAILDFIPPEKAKFVNNSDWLLSLYTLDFLRLGKHFTVNRM 116
>gnl|CDD|173893 cd00395, Tyr_Trp_RS_core, catalytic core domain of tyrosinyl-tRNA
and tryptophanyl-tRNA synthetase. Tyrosinyl-tRNA
synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS)
catalytic core domain. These enzymes attach Tyr or Trp,
respectively, to the appropriate tRNA. These class I
enzymes are homodimers, which aminoacylate the 2'-OH of
the nucleotide at the 3' of the appropriate tRNA. The
core domain is based on the Rossman fold and is
responsible for the ATP-dependent formation of the
enzyme bound aminoacyl-adenylate. It contains the class
I characteristic HIGH and KMSKS motifs, which are
involved in ATP binding.
Length = 273
Score = 31.1 bits (70), Expect = 0.49
Identities = 12/36 (33%), Positives = 22/36 (61%)
Query: 88 LYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVI 123
LY G P++++LH+GHL+ + + Q A P+ +
Sbjct: 2 LYCGIDPTADSLHIGHLIGLLTFRRFQHAGHRPIFL 37
>gnl|CDD|227204 COG4867, COG4867, Uncharacterized protein with a von Willebrand
factor type A (vWA) domain [General function prediction
only].
Length = 652
Score = 30.3 bits (68), Expect = 1.0
Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Query: 20 WEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDA 79
W S + Y+++ D G + LDQ Q L G RR V DLND+LD
Sbjct: 140 WR-SGQAREKYEQIKDLLGRELLDQRFAGMKQALAGATDDD--RRRVTEMLDDLNDLLDK 196
Query: 80 YEKGE 84
+ +GE
Sbjct: 197 HARGE 201
>gnl|CDD|202477 pfam02936, COX4, Cytochrome c oxidase subunit IV. Cytochrome c
oxidase, a 13 sub-unit complex, EC:1.9.3.1 is the
terminal oxidase in the mitochondrial electron transport
chain. This family is composed of cytochrome c oxidase
subunit IV. The Dictyostelium member of this family is
called COX VI. The yeast protein MTC3 appears to be the
yeast COX IV subunit.
Length = 142
Score = 28.9 bits (65), Expect = 1.5
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 120 PLVIQLTDDEKCMWKNLSVEESQRLAR 146
L++ L + EK WK+LS+EE + L R
Sbjct: 31 ELIMALREKEKGDWKSLSLEEKKALYR 57
>gnl|CDD|183452 PRK12337, PRK12337, 2-phosphoglycerate kinase; Provisional.
Length = 475
Score = 28.6 bits (64), Expect = 3.9
Identities = 10/28 (35%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 103 HLVP-FMFTKYLQDAFKVPLVIQLTDDE 129
HLVP ++ Y A VP+++ L D+
Sbjct: 368 HLVPGYLRHPYQAGALVVPMLVTLPDEA 395
>gnl|CDD|214538 smart00146, PI3Kc, Phosphoinositide 3-kinase, catalytic domain.
Phosphoinositide 3-kinase isoforms participate in a
variety of processes, including cell motility, the Ras
pathway, vesicle trafficking and secretion, and
apoptosis. These homologues may be either lipid kinases
and/or protein kinases: the former phosphorylate the
3-position in the inositol ring of inositol
phospholipids. The ataxia telangiectesia-mutated gene
produced, the targets of rapamycin (TOR) and the
DNA-dependent kinase have not been found to possess
lipid kinase activity. Some of this family possess PI-4
kinase activities.
Length = 240
Score = 27.6 bits (62), Expect = 5.6
Identities = 17/86 (19%), Positives = 25/86 (29%), Gaps = 23/86 (26%)
Query: 70 HRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDE 129
H D IL K F VPF T + D V+ +
Sbjct: 162 HIDFGFILGNGPKLFGF---------------PERVPFRLTPEMVD------VMGDSGYF 200
Query: 130 KCMWKNLSVEESQRLARENAKDIIAC 155
E + R R+N+ I++
Sbjct: 201 GLFRSL--CERALRALRKNSNLIMSL 224
>gnl|CDD|215420 PLN02785, PLN02785, Protein HOTHEAD.
Length = 587
Score = 27.8 bits (62), Expect = 6.6
Identities = 8/33 (24%), Positives = 11/33 (33%)
Query: 198 TGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDH 230
G+ H +P + SF SS S
Sbjct: 21 QGKSHFTPYRYPFIDKASSFSSSSSSSSSSGGD 53
>gnl|CDD|185747 cd09234, V_HD-PTP_like, Protein-interacting V-domain of mammalian
His-Domain type N23 protein tyrosine phosphatase and
related domains. This family contains the V-shaped (V)
domain of mammalian His-Domain type N23 protein tyrosine
phosphatase (HD-PTP, also known as PTPN23) and related
domains. It belongs to the V_Alix_like superfamily which
includes the V domains of Bro1 and Rim20 (also known as
PalA) from Saccharomyces cerevisiae, mammalian Alix
(apoptosis-linked gene-2 interacting protein X/ also
known as apoptosis-linked gene-2 interacting protein 1,
AIP1), and related domains. HD_PTP interacts with the
ESCRT (Endosomal Sorting Complexes Required for
Transport) system, and participates in cell migration
and endosomal trafficking. The related Alix V-domain
(belonging to a different family in this superfamily)
contains a binding site, partially conserved in the
superfamily, for the retroviral late assembly (L) domain
YPXnL motif. The Alix V-domain is also a dimerization
domain. In addition to the V-domain, HD_PTP also has an
N-terminal Bro1-like domain, a proline-rich region
(PRR), a catalytically inactive tyrosine phosphatase
domain, and a region containing a PEST motif. Bro1-like
domains bind components of the ESCRT-III complex,
specifically to CHMP4 in the case of HD-PTP. The
Bro1-like domain of HD-PTP can also bind human
immunodeficiency virus type 1 (HIV-1) nucleocapsid.
HD-PTP is encoded by the PTPN23 gene, a tumor suppressor
gene candidate frequently absent in human kidney,
breast, lung, and cervical tumors. This family also
contains Drosophila Myopic, which promotes epidermal
growth factor receptor (EGFR) signaling, and
Caenorhabditis elegans (enhancer of glp-1) EGO-2 which
promotes Notch signaling.
Length = 337
Score = 27.6 bits (62), Expect = 7.2
Identities = 29/113 (25%), Positives = 46/113 (40%), Gaps = 21/113 (18%)
Query: 1 MDKNEEKQREEEREQVVSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHV 60
+ + E+K +EE +Q +S S ++D ++D G L Q LV+R L+ RP +
Sbjct: 23 VSEIEDK--DEELDQFLS------SLQLDPLNVMDMDGQFELPQDLVERCAALSVRPDTI 74
Query: 61 --------FLRRGVFFAHRDLNDI---LDAYEKGEKFY--LYTGRGPSSEALH 100
L LN+I L+ E EK + RG S +
Sbjct: 75 KNLVEAMGELSDVYQDVEAMLNEIESLLEEEELQEKEFQEAVGKRGSSIAHVT 127
>gnl|CDD|188441 TIGR03926, T7_EssB, type VII secretion protein EssB. Members of
this family are associated with type VII secretion of
WXG100 family targets in the Firmicutes, but not in the
Actinobacteria. This protein is designated YukC in
Bacillus subtilis and EssB is Staphylococcus aureus
[Protein fate, Protein and peptide secretion and
trafficking].
Length = 377
Score = 27.3 bits (61), Expect = 7.9
Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 8/58 (13%)
Query: 40 QRLDQSLVDRVQRLTGR------PPHVFLRRG--VFFAHRDLNDILDAYEKGEKFYLY 89
RL +L D + L R P ++ +G HR + + L YE E+ +L
Sbjct: 81 LRLALNLADLEEHLNSRLTFILHPENLVFTKGLTPSIIHRGVKESLPPYELDEERFLK 138
>gnl|CDD|188087 TIGR00841, bass, bile acid transporter. The Bile Acid:Na+
Symporter (BASS) Family (TC 2.A.28) Functionally
characterized members of the BASS family catalyze
Na+:bile acid symport. These systems have been
identified in intestinal, liver and kidney tissues of
animals. These symporters exhibit broad specificity,
taking up a variety of non bile organic compounds as
well as taurocholate and other bile salts. Functionally
uncharacterised homologues are found in plants, yeast,
archaea and bacteria [Transport and binding proteins,
Carbohydrates, organic alcohols, and acids].
Length = 286
Score = 26.9 bits (60), Expect = 8.9
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 203 IGKVSFPPVQAVPSFPSSFPHLFSG 227
I ++SF P AVPS +
Sbjct: 244 IAQLSFSPEVAVPSAIFPLIYALFQ 268
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.324 0.141 0.435
Gapped
Lambda K H
0.267 0.0735 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 13,160,484
Number of extensions: 1271967
Number of successful extensions: 1288
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1266
Number of HSP's successfully gapped: 32
Length of query: 249
Length of database: 10,937,602
Length adjustment: 94
Effective length of query: 155
Effective length of database: 6,768,326
Effective search space: 1049090530
Effective search space used: 1049090530
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 58 (26.1 bits)