RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 025688
(249 letters)
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann
fold catalytic domain, AN recognition domain, bound
Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP:
c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A
Length = 437
Score = 303 bits (776), Expect = e-102
Identities = 147/242 (60%), Positives = 188/242 (77%), Gaps = 4/242 (1%)
Query: 4 NEEKQREEEREQVVSPWEV--SSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVF 61
N E E V PW V SS+ IDYDKLI +FG ++D+ L++R++R TG+ PH F
Sbjct: 25 NHGPDATEAEEDFVDPWTVQTSSAKGIDYDKLIVRFGSSKIDKELINRIERATGQRPHHF 84
Query: 62 LRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPL 121
LRRG+FF+HRD+N +LDAYE + FYLYTGRGPSSEA+H+GHL+PF+FTK+LQD F VPL
Sbjct: 85 LRRGIFFSHRDMNQVLDAYENKKPFYLYTGRGPSSEAMHVGHLIPFIFTKWLQDVFNVPL 144
Query: 122 VIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVG--GAFYKNM 179
VIQ+TDDEK +WK+L+++++ A ENAKDIIACGFD+ KTFIFSD DY+G FYKN+
Sbjct: 145 VIQMTDDEKYLWKDLTLDQAYGDAVENAKDIIACGFDINKTFIFSDLDYMGMSSGFYKNV 204
Query: 180 VKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAI 239
VK+ K VT+N+V GIFGFT D IGK+SFP +QA PSF +SFP +F + ++CLIPCAI
Sbjct: 205 VKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAI 264
Query: 240 DQ 241
DQ
Sbjct: 265 DQ 266
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann
fold catalytical domain, recognition domain, bound
Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP:
a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A*
2quk_A
Length = 477
Score = 300 bits (770), Expect = e-101
Identities = 147/243 (60%), Positives = 188/243 (77%), Gaps = 4/243 (1%)
Query: 4 NEEKQREEEREQVVSPWEV--SSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVF 61
N E E V PW V SS+ IDYDKLI +FG ++D+ L++R++R TG+ PH F
Sbjct: 72 NHGPDATEAEEDFVDPWTVQTSSAKGIDYDKLIVRFGSSKIDKELINRIERATGQRPHHF 131
Query: 62 LRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPL 121
LRRG+FF+HRD+N +LDAYE + FYLYTGRGPSSEA+H+GHL+PF+FTK+LQD F VPL
Sbjct: 132 LRRGIFFSHRDMNQVLDAYENKKPFYLYTGRGPSSEAMHVGHLIPFIFTKWLQDVFNVPL 191
Query: 122 VIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVG--GAFYKNM 179
VIQ+TDDEK +WK+L+++++ A ENAKDIIACGFD+ KTFIFSD DY+G FYKN+
Sbjct: 192 VIQMTDDEKYLWKDLTLDQAYGDAVENAKDIIACGFDINKTFIFSDLDYMGMSSGFYKNV 251
Query: 180 VKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAI 239
VK+ K VT+N+V GIFGFT D IGK+SFP +QA PSF +SFP +F + ++CLIPCAI
Sbjct: 252 VKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAI 311
Query: 240 DQV 242
DQ
Sbjct: 312 DQD 314
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics,
PSI-2, protein structure initiative; HET: PG4; 1.80A
{Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A*
3kt8_A*
Length = 432
Score = 296 bits (759), Expect = e-100
Identities = 125/248 (50%), Positives = 176/248 (70%), Gaps = 8/248 (3%)
Query: 2 DKNEEKQREEEREQVVSPWEVS-------SSGKIDYDKLIDKFGCQRLDQSLVDRVQRLT 54
+ E + + +EQVV+PW+V + IDYDKLI +FG + +++ + R +++T
Sbjct: 12 QQVSELKSTDVKEQVVTPWDVEGGVDEQGRAQNIDYDKLIKQFGTKPVNEETLKRFKQVT 71
Query: 55 GRPPHVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQ 114
GR PH FLR+G+FF+ RD ILD YE+G+ F+LYTGRGPSS+++HLGH++PF+FTK+LQ
Sbjct: 72 GREPHHFLRKGLFFSERDFTKILDLYEQGKPFFLYTGRGPSSDSMHLGHMIPFVFTKWLQ 131
Query: 115 DAFKVPLVIQLTDDEKCMWKN-LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGG 173
+ F VPLVI+LTDDEK ++K+ L++ + + ARENAKDIIA GFD TFIFSD Y+GG
Sbjct: 132 EVFDVPLVIELTDDEKFLFKHKLTINDVKNFARENAKDIIAVGFDPKNTFIFSDLQYMGG 191
Query: 174 AFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRC 233
AFY+ +V+V++ +T + +FGF D IGK F +Q +FPSSFP++ D C
Sbjct: 192 AFYETVVRVSRQITGSTAKAVFGFNDSDCIGKFHFASIQIATAFPSSFPNVLGLPDKTPC 251
Query: 234 LIPCAIDQ 241
LIPCAIDQ
Sbjct: 252 LIPCAIDQ 259
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann
fold, crystallography, X-RAY, P. horikoshii,
aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus
horikoshii}
Length = 392
Score = 287 bits (736), Expect = 1e-96
Identities = 100/229 (43%), Positives = 140/229 (61%), Gaps = 16/229 (6%)
Query: 14 EQVVSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDL 73
E V+PWEV G +DYDKLI FG L + L+++ LT +F RR FF+HRD
Sbjct: 4 EFKVTPWEVE--GVVDYDKLIKHFGTSPLTEDLLEKTAELTKSELPIFFRRKFFFSHRDY 61
Query: 74 NDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMW 133
+ IL YE+G F+LYTGRGPS +H+GH++PF TK+LQ+ F V L IQ+TDDEK ++
Sbjct: 62 DLILKDYEEGRGFFLYTGRGPSGP-MHIGHIIPFFATKWLQEKFGVNLYIQITDDEKFLF 120
Query: 134 K-NLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVV 192
K NL+ ++++R A +N DIIA GFD KTFIF + ++ Y+ + +AK + ++
Sbjct: 121 KENLTFDDTKRWAYDNILDIIAVGFDPDKTFIFQNSEFT--KIYEMAIPIAKKINFSMAK 178
Query: 193 GIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQ 241
+FGFT + IG + FP +Q P+F CLIP AIDQ
Sbjct: 179 AVFGFTEQSKIGMIFFPAIQIAPTFFERKR----------CLIPAAIDQ 217
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding,
aminoacyl-tRNA synthetase, ligase, nucleotide-binding;
HET: TRP; 2.42A {Cryptosporidium parvum iowa II}
Length = 393
Score = 285 bits (731), Expect = 5e-96
Identities = 127/230 (55%), Positives = 172/230 (74%), Gaps = 4/230 (1%)
Query: 15 QVVSPWEVS--SSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRD 72
PWEV ++ IDY+KLIDKFGC+ + + +++R++RLTG+ H F RR +F +HRD
Sbjct: 2 PGSMPWEVKADNAYGIDYNKLIDKFGCKLITKDMIERMERLTGQKAHHFFRRNIFLSHRD 61
Query: 73 LNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCM 132
ILD YEKGE FYLYTGRGPSSE+LH+GHLVPF+FTKYLQD FKVPLVIQLTDDEK +
Sbjct: 62 FEKILDVYEKGELFYLYTGRGPSSESLHVGHLVPFLFTKYLQDTFKVPLVIQLTDDEKFI 121
Query: 133 WKN-LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKV 191
+K+ L++EE+ A EN KDIIACGFD TFIF++ +Y+ Y +++++ K ++ +++
Sbjct: 122 FKSNLTLEETHNYAYENMKDIIACGFDPELTFIFTNLEYI-AELYPDILRIEKKISCSQI 180
Query: 192 VGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQ 241
IFGF ++GK +FP VQA P+F SSFPH+F G+ + CL+P AIDQ
Sbjct: 181 KSIFGFKDSCNVGKFAFPAVQAAPAFSSSFPHIFGGRTDIHCLVPHAIDQ 230
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding,
aminoacyl-tRNA synthetase, LIG nucleotide-binding,
protein biosynthesis; 2.80A {Trypanosoma brucei}
Length = 395
Score = 284 bits (729), Expect = 1e-95
Identities = 126/235 (53%), Positives = 172/235 (73%), Gaps = 4/235 (1%)
Query: 8 QREEEREQVVSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVF 67
E VV+PW V G ++YDKLI FG +D++L++R++R+ G+ PH FLRRG+F
Sbjct: 3 HHHHHHEAVVTPWSVE--GDVNYDKLIKDFGSHAIDEALLERIERVLGKKPHHFLRRGIF 60
Query: 68 FAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTD 127
F+HRDLN +LD YE G+ FYLYTGRGPSSE++H+GHL+PFMFTK+LQD+F+VPLVIQ+TD
Sbjct: 61 FSHRDLNLLLDVYESGQPFYLYTGRGPSSESMHMGHLIPFMFTKWLQDSFRVPLVIQMTD 120
Query: 128 DEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVT 187
DEK ++N+ +E+ + + EN KDIIA GFD TFIF DFDY+ G Y+ + K+ + T
Sbjct: 121 DEKFYFRNIPMEQVEAMTTENIKDIIAMGFDPELTFIFRDFDYM-GCMYRTVAKIERAFT 179
Query: 188 YNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFS-GKDHLRCLIPCAIDQ 241
++V G FGF ED+ G+ FP +QA PSF ++FPH+F ++ CLIP AIDQ
Sbjct: 180 ASQVRGCFGFAMEDNCGRWMFPAIQAAPSFSAAFPHIFPPSMGNVFCLIPQAIDQ 234
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, amino acylation; HET: TRP; 2.60A
{Encephalitozoon cuniculi}
Length = 406
Score = 277 bits (709), Expect = 2e-92
Identities = 107/243 (44%), Positives = 159/243 (65%), Gaps = 10/243 (4%)
Query: 5 EEKQREEEREQVVSPWEVSSSG------KIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPP 58
+ + EQ ++PW+V IDYDK+I++FGC++ +Q+L DR+++L+G+P
Sbjct: 15 QTQGPGSMAEQRITPWDVEVVSTDEVPVAIDYDKIINQFGCEKFNQALADRLEKLSGKPA 74
Query: 59 HVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFK 118
H F RRG+ FAHRD N +LD FYLYTGRGPSS+ +H+GH +PF+ KY+QDAFK
Sbjct: 75 HYFFRRGIVFAHRDFNLLLDEIANNRPFYLYTGRGPSSKTMHIGHTIPFLLCKYMQDAFK 134
Query: 119 VPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKN 178
+ LVIQ+TDDEK +WK++ +E++ REN KDI+ GFD T+IFS+ + F +N
Sbjct: 135 IRLVIQITDDEKFLWKSMRLEDAMAYGRENIKDIVTLGFDPKLTYIFSNVEA-SHHFEEN 193
Query: 179 MVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCA 238
++K++K + N+ + +FGF +IG+V FP + P F SSF + G CL+P A
Sbjct: 194 ILKISKTINLNEAIKVFGFDMSSNIGQVGFPAKEIAPCFSSSFRFIGKGA---MCLVPAA 250
Query: 239 IDQ 241
+DQ
Sbjct: 251 VDQ 253
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics,
medical structural GEN pathogenic protozoa, MSGPP,
ligase; 3.00A {Entamoeba histolytica}
Length = 386
Score = 272 bits (697), Expect = 6e-91
Identities = 72/235 (30%), Positives = 125/235 (53%), Gaps = 7/235 (2%)
Query: 10 EEEREQVVSPWEV---SSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGV 66
Q +P ++ ++ DY++LI+ G + + R+++L+G+ PH +L RGV
Sbjct: 4 HHHHHQTQTPSQLLQSFTTRTTDYNQLINSVGINAITPQQIQRIEKLSGKAPHHYLSRGV 63
Query: 67 FFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLT 126
F A + L+ LD E + +++ + P E + L + F +YLQDAF + ++IQ+
Sbjct: 64 FLAEKSLDKFLDDVEAKKPTFIFIQKYPQKE-VALEEYITLEFARYLQDAFNIQVIIQIL 122
Query: 127 DDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCV 186
DD K + + ++ E+ +++ + K I+A GF+ KTFI++D+ Y G Y+ + V K
Sbjct: 123 DDIKVLNREATINEASKMSNDLMKYILAFGFNEDKTFIYTDYQYF-GKMYRTISLVEKAT 181
Query: 187 TYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQ 241
YN V F F D+IGK++ P + F S+ H FS RCL+ +I
Sbjct: 182 AYNVVQPFFNFEYSDNIGKLASPSIMTASMFSQSYSHFFSSP--ARCLVLDSIKN 234
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi
aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia
lamblia atcc 50803}
Length = 451
Score = 255 bits (652), Expect = 2e-83
Identities = 97/243 (39%), Positives = 137/243 (56%), Gaps = 8/243 (3%)
Query: 1 MDKNEEKQREEEREQVVSPWEV------SSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLT 54
M + Q P + + + + Y+ +I +FG + L+ R + +T
Sbjct: 1 MAHHHHHHMGTLEAQTQGPGSMMETDATAEAAAVAYEDIITRFGAAPITDDLLKRFETVT 60
Query: 55 GRPPHVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQ 114
G H LRRG+F+AHRD + L YEKG Y+YTGRGPSS ALHLGHL+PF+FTKYLQ
Sbjct: 61 GTKAHPMLRRGLFYAHRDFEEFLSYYEKGHPIYIYTGRGPSSGALHLGHLLPFIFTKYLQ 120
Query: 115 DAFKVPLVIQLTDDEKCMW-KNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVG- 172
DAFK +VIQ+TDDEK + ++LS E REN KDIIACGFD KTFIF + Y+
Sbjct: 121 DAFKCYVVIQITDDEKFLRNRSLSYAEVDSYTRENIKDIIACGFDPDKTFIFINSQYLSL 180
Query: 173 GAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLR 232
Y+ V + + +++ FGF+ + ++G +FPP Q +P + + F L + L
Sbjct: 181 KNRYRFSCLVDRMLPISQLRASFGFSNDANVGYAAFPPKQMLPVYSTYFDGLPFTRVPLP 240
Query: 233 CLI 235
Sbjct: 241 VGT 243
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding;
HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}
Length = 348
Score = 153 bits (388), Expect = 5e-45
Identities = 34/189 (17%), Positives = 66/189 (34%), Gaps = 18/189 (9%)
Query: 62 LRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPL 121
+ L+ + + G F Y G PS +H+ + + +
Sbjct: 17 QLLSIAEECETLDRLKQLVDSGRIFTAYNGFEPSGR-IHIAQALITVMNTNNMIECGGQM 75
Query: 122 VIQLTDDEKCM--WKNLSVEESQRLARENAKDIIACGFDVTKTFIF--SDFDYVGGAFYK 177
+I + D M N + + + L R + ACG ++ T S+F ++ +
Sbjct: 76 IIYIADWFAKMNLKMNGDINKIRELGRYFIEVFKACGINLDGTRFIWASEFIASNPSYIE 135
Query: 178 NMVKVAKCVTYNKV---VGIFGFTGEDHI--GKVSFPPVQAVPSFPSSFPHLFSGKDHLR 232
M+ +A+ T ++V I G D + ++ +P +QA F
Sbjct: 136 RMLDIAEFSTISRVKRCCQIMGRNESDCLKASQIFYPCMQAADVFELVPEG--------I 187
Query: 233 CLIPCAIDQ 241
+ IDQ
Sbjct: 188 DICQLGIDQ 196
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex;
HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A
{Saccharomyces cerevisiae}
Length = 394
Score = 53.6 bits (129), Expect = 1e-08
Identities = 24/160 (15%), Positives = 51/160 (31%), Gaps = 22/160 (13%)
Query: 72 DLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDA-FKVPLVIQLTDDEK 130
+ D+L+ + LY G P+ H G+ VP A +V + L D
Sbjct: 28 IIKDVLEV--QKRHLKLYWGTAPTGR-PHCGYFVPMTKLADFLKAGCEV--TVLLADLHA 82
Query: 131 CMWKNLSVEESQRLARENAKDII--------ACGFDVTKT-FIFSDFDYVGGAFYKNMVK 181
+ + E + AK + + K F+ + + ++ +
Sbjct: 83 FLDNMKAPLE---VVNYRAKYYELTIKAILRSINVPIEKLKFVVGSSYQLTPDYTMDIFR 139
Query: 182 VAKCVTYNKVVGIF----GFTGEDHIGKVSFPPVQAVPSF 217
++ V+ N + + +P +QA+
Sbjct: 140 LSNIVSQNDAKRAGADVVKQVANPLLSGLIYPLMQALDEQ 179
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group
I intron; HET: TYR; 1.95A {Neurospora crassa} PDB:
2rkj_A
Length = 392
Score = 44.2 bits (105), Expect = 2e-05
Identities = 12/53 (22%), Positives = 23/53 (43%)
Query: 64 RGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDA 116
RG + + + + Y G P++ +LH+GHL+P M ++
Sbjct: 43 RGYVKDTAGTKEHIAELMRTRRIGAYVGIDPTAPSLHVGHLLPLMPLFWMYLE 95
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A
{Plasmodium falciparum}
Length = 373
Score = 44.0 bits (104), Expect = 2e-05
Identities = 21/158 (13%), Positives = 55/158 (34%), Gaps = 19/158 (12%)
Query: 74 NDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMF-TKYLQDA---FKVPLVIQ--LTD 127
+++ K Y G PS +H+ + L F + +
Sbjct: 45 DELRVKLLLKRKLICYDGFEPSGR-MHIAQGLLKSIIVNKLTSNGCTFIFWIADWFAHLN 103
Query: 128 DEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIF--SDFDYVGGAFYKNMV-KVAK 184
++ M +L ++ +++ + +CG ++ S+ Y ++V +++
Sbjct: 104 NK--MSGDL--KKIKKVGSYFIEVWKSCGMNMENVQFLWASEEINKKPNEYWSLVLDISR 159
Query: 185 CVTYNKVVGIFGFTG-----EDHIGKVSFPPVQAVPSF 217
N++ G E++ ++ +P +Q F
Sbjct: 160 SFNINRMKRCLKIMGRSEGEENYCSQILYPCMQCADIF 197
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET:
TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1
d.66.1.4 PDB: 1h3e_A*
Length = 432
Score = 42.8 bits (101), Expect = 5e-05
Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Query: 62 LRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDA 116
L+RG + ++L ++G + G P+ LHLGH V + Q+
Sbjct: 15 LKRGAEEIVPE-EELLAKLKEGRPLTVKLGADPTRPDLHLGHAVVLRKMRQFQEL 68
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural
genomics, NPPSFA, natio project on protein structural
and functional analyses; HET: AZY; 1.80A {Escherichia
coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*
Length = 322
Score = 42.6 bits (101), Expect = 6e-05
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 64 RGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDA 116
RG+ D + + +G L G P++++LHLGHLVP + K Q A
Sbjct: 13 RGLVAQVTDEEALAERLAQG-PIALVCGFDPTADSLHLGHLVPLLCLKRFQQA 64
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural
genomics, NPPSFA, national on protein structural and
functional analyses; 2.20A {Aeropyrum pernix}
Length = 364
Score = 42.4 bits (100), Expect = 6e-05
Identities = 28/153 (18%), Positives = 53/153 (34%), Gaps = 13/153 (8%)
Query: 75 DILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDA-FKVPLVIQLTDDEKCMW 133
++ G + Y G PS H+G LV K L +A + +
Sbjct: 25 ELKGLLASGARIKGYIGYEPSGV-AHIGWLVWMYKVKDLVEAGVDF--SVLEATWHAYIN 81
Query: 134 KNL--SVEESQRLARENAKDIIACGFDVTKTFIFSDFDYV-GGAFYKNMVKVAKCVTYNK 190
L ++ + AR + + A G V + + ++ +++VAK + +
Sbjct: 82 DKLGGDMDLIRAAARIVRRVMEAAGVPVERVRFVDAEELASDKDYWGLVIRVAKRASLAR 141
Query: 191 V------VGIFGFTGEDHIGKVSFPPVQAVPSF 217
V +G E K+ +P +Q F
Sbjct: 142 VRRALTIMGRRAEEAEVDASKLIYPLMQVSDIF 174
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA
synthetase, tyrrs, ligase, tyrosine, RNA-binding,
ATP-binding; 2.9A {Mycobacterium tuberculosis}
Length = 432
Score = 41.8 bits (99), Expect = 9e-05
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 64 RGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDA 116
RG+ DL+ + ++G +Y G P++ +LH GHLVP + + Q A
Sbjct: 12 RGLIAQSTDLDTLAAEAQRG-PMTVYAGFDPTAPSLHAGHLVPLLTLRRFQRA 63
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase,
protein-substrate complex, ATP-BI ligase, mitochondrion,
nucleotide-binding, protein biosynth; HET: YSA; 2.20A
{Homo sapiens} PDB: 3zxi_A*
Length = 356
Score = 41.9 bits (99), Expect = 1e-04
Identities = 13/45 (28%), Positives = 25/45 (55%)
Query: 72 DLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDA 116
+L ++ D +Y G P++++LH+GHL+ + +LQ A
Sbjct: 33 ELPELFDRGTASFPQTIYCGFDPTADSLHVGHLLALLGLFHLQRA 77
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design,
ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP:
c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Length = 420
Score = 41.4 bits (98), Expect = 2e-04
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 64 RGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDA 116
RG+ + D I D K + LY G P++++LH+GHL+PF+ + Q+
Sbjct: 12 RGLIYQQTDEQGIEDLLNKE-QVTLYCGADPTADSLHIGHLLPFLTLRRFQEH 63
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus
stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E*
1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Length = 419
Score = 41.0 bits (97), Expect = 2e-04
Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 64 RGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDA 116
RG+ D + + + + LY G P++++LH+GHL + + Q A
Sbjct: 10 RGLVNQTTDEDGLRKLLNEE-RVTLYCGFDPTADSLHIGHLATILTMRRFQQA 61
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase,
AARS, tyrrs, pseudod translation, ATP-binding,
nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania
major} PDB: 3p0i_A* 3p0h_A*
Length = 690
Score = 39.1 bits (91), Expect = 0.001
Identities = 27/146 (18%), Positives = 53/146 (36%), Gaps = 18/146 (12%)
Query: 81 EKGEKFYLYTGRGPSSEALHLGHLVPFM--FTKYLQDAFKVPLVI----QLTDDEKCMWK 134
EK Y G PS +H+ + K + + L +D+ +
Sbjct: 36 EKKPLIRCYDGFEPSGR-MHIAQGIFKAVNVNKCTAAGCEFVFWVADWFALMNDK--VGG 92
Query: 135 NLSVEESQRLARENAKDIIACGFDVTKT-FIF-SDFDYVGGAFY-KNMVKVAKCVTYNKV 191
L E+ + + R + A G D+ K F++ S+ Y + ++ + + T ++
Sbjct: 93 EL--EKIRIVGRYLIEVWKAAGMDMDKVLFLWSSEEITSHADTYWRMVLDIGRQNTIARI 150
Query: 192 ---VGIFGFTGEDH-IGKVSFPPVQA 213
I G T +V +P +Q
Sbjct: 151 KKCCTIMGKTEGTLTAAQVLYPLMQC 176
Score = 27.9 bits (62), Expect = 3.4
Identities = 9/77 (11%), Positives = 27/77 (35%), Gaps = 3/77 (3%)
Query: 139 EESQRLARENAKDIIACGFDVTKTFIF-SDFDYVGGAFYKNMV-KVAKCVTYNKVVGIFG 196
++ + N + A G + + ++ + V +A+ + V ++G
Sbjct: 438 KDISAALQVNCALLKAYGLPSSVKIVTENEVILGNCDDFWVSVIGIARKNLLSHVEELYG 497
Query: 197 FTGEDHIGKVSFPPVQA 213
+ G+V ++
Sbjct: 498 GEVRN-AGQVIAALMRV 513
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: TYR; 1.80A {Archaeoglobus
fulgidus}
Length = 323
Score = 37.3 bits (87), Expect = 0.003
Identities = 33/121 (27%), Positives = 56/121 (46%), Gaps = 17/121 (14%)
Query: 75 DILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDA-FKVPLVI-----QLTDD 128
++ E EK Y G PS E +HLGH++ LQ+A F++ +++ L +
Sbjct: 22 ELRQLIETKEKPRAYVGYEPSGE-IHLGHMMTVQKLMDLQEAGFEIIVLLADIHAYLNE- 79
Query: 129 EKCMWKNLSVEESQRLARENAKDIIACGFDVTKT-FIFSDFDYVGGAFY-KNMVKVAKCV 186
K + EE +A N K IA G D ++ F+ +Y Y +++K+A+
Sbjct: 80 -----KG-TFEEIAEVADYNKKVFIALGLDESRAKFVLGS-EYQLSRDYVLDVLKMARIT 132
Query: 187 T 187
T
Sbjct: 133 T 133
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique
anticodon recognit domain, dimer, ligase; 1.18A {Homo
sapiens} SCOP: c.26.1.1 PDB: 1q11_A*
Length = 372
Score = 34.0 bits (78), Expect = 0.035
Identities = 25/155 (16%), Positives = 53/155 (34%), Gaps = 16/155 (10%)
Query: 75 DILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDA-FKVPLVI-----QLTDD 128
+ L K + +Y G + + H+ + VP A +V ++ L D+
Sbjct: 25 EKLKEILKERELKIYWGTATTGK-PHVAYFVPMSKIADFLKAGCEVTILFADLHAYL-DN 82
Query: 129 EKCMWKNLSVEESQRLARENAKDII-ACGFDVTKTFIFSDFDYVGGAFY-KNMVKVAKCV 186
K W+ +E K ++ + G + K DY Y ++ +++ V
Sbjct: 83 MKAPWEL--LELRVSYYENVIKAMLESIGVPLEKLKFIKGTDYQLSKEYTLDVYRLSSVV 140
Query: 187 TYNKVVGIFGF----TGEDHIGKVSFPPVQAVPSF 217
T + + + +P +QA+
Sbjct: 141 TQHDSKKAGAEVVKQVEHPLLSGLLYPGLQALDEE 175
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 33.7 bits (76), Expect = 0.055
Identities = 18/170 (10%), Positives = 38/170 (22%), Gaps = 64/170 (37%)
Query: 32 KLIDKF--GCQRL----DQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKGEK 85
K + F C+ L + + D + T H L+ E
Sbjct: 257 KAWNAFNLSCKILLTTRFKQVTDFLSAATTT-------------HISLDHHSMTLTPDEV 303
Query: 86 ---FYLYTGRGPSS---EALHLGHLVPFMFTKYLQDAF------------KVPLVIQLT- 126
Y P E L + + ++D K+ +I+ +
Sbjct: 304 KSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSL 363
Query: 127 -------------------DDEK------CM-WKNLSVEESQRLARENAK 150
+ W ++ + + + K
Sbjct: 364 NVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHK 413
Score = 31.7 bits (71), Expect = 0.26
Identities = 37/282 (13%), Positives = 77/282 (27%), Gaps = 97/282 (34%)
Query: 25 SGKIDY----------DKLIDKFGCQRLDQSL------------------VDRVQRLTGR 56
+G+ Y D +D F C+ + V RL
Sbjct: 11 TGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFW- 69
Query: 57 PPHVFLRRGVFFAHRDLNDILDA-YEKGEKFYLYTG-----RGPS------SEALHLGHL 104
L + + + ++L Y+ +L + R PS E +
Sbjct: 70 ---TLLSKQEEMVQKFVEEVLRINYK-----FLMSPIKTEQRQPSMMTRMYIEQRDRLYN 121
Query: 105 VPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEES-----------QRLARENAKDII 153
+F KY + ++ ++L + + L ++ +A +
Sbjct: 122 DNQVFAKY--NVSRLQPYLKLR---QAL-LELRPAKNVLIDGVLGSGKTWVALDVCLS-- 173
Query: 154 ACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIF----------GFTGEDHI 203
+ V F F+ + + C + V+ + + DH
Sbjct: 174 ---YKVQCKMDF-------KIFW---LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDH- 219
Query: 204 GKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQVGSP 245
S + S + L K + CL+ + V +
Sbjct: 220 ---SSNIKLRIHSIQAELRRLLKSKPYENCLL--VLLNVQNA 256
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation,
structural genomics; HET: TYR; 2.20A {Pyrococcus
horikoshii}
Length = 375
Score = 32.1 bits (73), Expect = 0.14
Identities = 19/103 (18%), Positives = 31/103 (30%), Gaps = 10/103 (9%)
Query: 75 DILDAYEKGEKFYLYTGRGPSSEALHLGH-LVPFMFTKYLQDA-FKVPLVI-----QLTD 127
++ +E G Y G S +HLG L+ Q A K + + + D
Sbjct: 23 NLRHLFEIGAPLQHYIGFEISGY-IHLGTGLMAGAKIADFQKAGIKTRVFLADWHSWIND 81
Query: 128 DEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIF--SDF 168
+ + + K I G D K S+
Sbjct: 82 KLGGDLEVIQEVALKYFKVGMEKSIEVMGGDPKKVEFVLASEI 124
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 30.9 bits (69), Expect = 0.25
Identities = 11/77 (14%), Positives = 26/77 (33%), Gaps = 23/77 (29%)
Query: 1 MDKNEEKQREEEREQVVSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHV 60
+D + +E RE+ K ++++ ++ +Q V++ +
Sbjct: 101 LDAASKVMEQEWREKA--------------KKDLEEWNQRQSEQ--VEKNKINNRIADKA 144
Query: 61 FLRRGVFFAHRDLNDIL 77
F D DI+
Sbjct: 145 FY------QQPD-ADII 154
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.2 bits (70), Expect = 0.40
Identities = 40/250 (16%), Positives = 79/250 (31%), Gaps = 67/250 (26%)
Query: 20 WEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGR-----PPHVFLRRGVFFAHRDLN 74
V ++ +L ++F ++ L + + P + + F +
Sbjct: 20 LLVPTASFFIASQLQEQF-----NKILPEPTEGFAADDEPTTPAELVGK---FLGY---- 67
Query: 75 DILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQD----AFKVPLVIQLTDDEK 130
+ E + G + L+L L F YL+ A L L +++
Sbjct: 68 -VSSLVEPSKV-------GQFDQVLNLC-LTEF-ENCYLEGNDIHALAAKL---LQENDT 114
Query: 131 CMWKNLSVEESQRLARENAKDII----------ACGFDVTKTF-IFSDFDYVGG-----A 174
+ K + ++ AR AK A G + IF GG
Sbjct: 115 TLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIF------GGQGNTDD 168
Query: 175 FYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSF--------PHLFS 226
+++ + + + TY+ +VG + + ++ + A F P
Sbjct: 169 YFEELRDLYQ--TYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTP 226
Query: 227 GKDHLRCLIP 236
KD+L IP
Sbjct: 227 DKDYL-LSIP 235
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase,
aminoacyl-tRNA synthetase, ATP-binding, cytoplasm,
nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus
jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A*
1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A
3n2y_A* 2hgz_A*
Length = 314
Score = 29.9 bits (68), Expect = 0.75
Identities = 26/120 (21%), Positives = 48/120 (40%), Gaps = 18/120 (15%)
Query: 75 DILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDA-FKVPLVI-----QLTDD 128
+ L K ++ Y G PS + +HLGH + LQ+A F + +++ L
Sbjct: 18 EELREVLKKDEKSAYIGFEPSGK-IHLGHYLQIKKMIDLQNAGFDIIILLADLAAYLNQ- 75
Query: 129 EKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFI-FSDFDYVGGAFYKNMVKVAKCVT 187
K +E +++ N K A G ++ S+F + N+ ++A T
Sbjct: 76 -KGEL-----DEIRKIGDYNKKVFEAMGLK--AKYVYGSEFQL-DKDYTLNVYRLALKTT 126
>2y69_D Cytochrome C oxidase subunit 4 isoform 1; electron transport,
complex IV, proton pumps, membrane prote; HET: TPO HEA
CHD PEK PGV DMU; 1.95A {Bos taurus}
Length = 169
Score = 26.9 bits (59), Expect = 4.7
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 120 PLVIQLTDDEKCMWKNLSVEE 140
L + EK W +LS++E
Sbjct: 57 ASQKALKEKEKASWSSLSIDE 77
>1v54_D Cytochrome C oxidase subunit IV isoform 1; oxidoreductase; HET: FME
TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus}
SCOP: f.23.1.1 PDB: 1oco_D* 1occ_D* 1ocz_D* 1ocr_D*
1v55_D* 2dyr_D* 2dys_D* 2eij_D* 2eik_D* 2eil_D* 2eim_D*
2ein_D* 2occ_D* 2ybb_O* 2zxw_D* 3abk_D* 3abl_D* 3abm_D*
3ag1_D* 3ag2_D* ...
Length = 147
Score = 26.4 bits (58), Expect = 6.9
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 120 PLVIQLTDDEKCMWKNLSVEE 140
L + EK W +LS++E
Sbjct: 35 ASQKALKEKEKASWSSLSIDE 55
>1wlz_A DJBP, CAP-binding protein complex interacting protein 1 isoform
A; EF-hand like, unknown function; 1.60A {Homo sapiens}
SCOP: a.39.1.7
Length = 105
Score = 25.5 bits (56), Expect = 9.9
Identities = 5/48 (10%), Positives = 22/48 (45%)
Query: 1 MDKNEEKQREEEREQVVSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVD 48
++ + +E+ +++ + V++ G++ Y + +F + +
Sbjct: 50 CNRRVQILTDEQFDRLWNEMPVNAKGRLKYPDFLSRFSSETAATPMAT 97
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.141 0.435
Gapped
Lambda K H
0.267 0.0450 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,968,636
Number of extensions: 244599
Number of successful extensions: 678
Number of sequences better than 10.0: 1
Number of HSP's gapped: 643
Number of HSP's successfully gapped: 37
Length of query: 249
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 158
Effective length of database: 4,160,982
Effective search space: 657435156
Effective search space used: 657435156
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (26.0 bits)