BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 025689
         (249 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1HIZ|A Chain A, Xylanase T6 (Xt6) From Bacillus Stearothermophilus
 pdb|1R85|A Chain A, Crystal Structure Of The Extracellular Xylanase From
           Geobacillus Stearothermophilus T-6 (Xt6): The Wt Enzyme
           (Monoclinic Form) At 1.45a Resolution
 pdb|1R87|A Chain A, Crystal Structure Of The Extracellular Xylanase From
           Geobacillus Stearothermophilus T-6 (Xt6, Monoclinic
           Form): The Complex Of The Wt Enzyme With Xylopentaose At
           1.67a Resolution
          Length = 379

 Score = 27.7 bits (60), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 34/128 (26%), Positives = 52/128 (40%), Gaps = 30/128 (23%)

Query: 42  VSRLKNK-SYYDSFNNSLGGAGKPLSSPVV-LADMEHRQVKMQT------------VNSF 87
           V R K+   Y+D  N  +G  GK  +SP   +A +++ +V  Q             +N +
Sbjct: 144 VERYKDDIKYWDVVNEVVGDDGKLRNSPWYQIAGIDYIKVAFQAARKYGGDNIKLYMNDY 203

Query: 88  LAETPESTEAMVNA----KEAGEFAAVNVPSDVLQSQSSFLAISHLKNNWPMKIKIESGT 143
             E      A+ N     KE G      VP D +  QS      H++  WP + +IE   
Sbjct: 204 NTEVEPKRTALYNLVKQLKEEG------VPIDGIGHQS------HIQIGWPSEAEIEKTI 251

Query: 144 NVCHLLLL 151
           N+   L L
Sbjct: 252 NMFAALGL 259


>pdb|1R86|A Chain A, Crystal Structure Of The Extracellular Xylanase From
           Geobacillus Stearothermophilus T-6 (Xt6, Monoclinic
           Form): The E159aE265A MUTANT AT 1.8A RESOLUTION
          Length = 379

 Score = 27.3 bits (59), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 34/128 (26%), Positives = 52/128 (40%), Gaps = 30/128 (23%)

Query: 42  VSRLKNK-SYYDSFNNSLGGAGKPLSSPVV-LADMEHRQVKMQT------------VNSF 87
           V R K+   Y+D  N  +G  GK  +SP   +A +++ +V  Q             +N +
Sbjct: 144 VERYKDDIKYWDVVNAVVGDDGKLRNSPWYQIAGIDYIKVAFQAARKYGGDNIKLYMNDY 203

Query: 88  LAETPESTEAMVNA----KEAGEFAAVNVPSDVLQSQSSFLAISHLKNNWPMKIKIESGT 143
             E      A+ N     KE G      VP D +  QS      H++  WP + +IE   
Sbjct: 204 NTEVEPKRTALYNLVKQLKEEG------VPIDGIGHQS------HIQIGWPSEAEIEKTI 251

Query: 144 NVCHLLLL 151
           N+   L L
Sbjct: 252 NMFAALGL 259


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.131    0.365 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,158,308
Number of Sequences: 62578
Number of extensions: 216394
Number of successful extensions: 773
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 773
Number of HSP's gapped (non-prelim): 5
length of query: 249
length of database: 14,973,337
effective HSP length: 96
effective length of query: 153
effective length of database: 8,965,849
effective search space: 1371774897
effective search space used: 1371774897
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)