BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 025689
         (249 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9HDW5|YFW6_SCHPO UPF0644 protein PB2B4.06 OS=Schizosaccharomyces pombe (strain 972 /
           ATCC 24843) GN=SPAPB2B4.06 PE=3 SV=2
          Length = 256

 Score = 33.9 bits (76), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 5/67 (7%)

Query: 18  ERKMVSDLSNRIDDLKV--DLEW---YKEVSRLKNKSYYDSFNNSLGGAGKPLSSPVVLA 72
           + K V ++ NR+ +LK+  DL     ++E+    N+S +   NN L G G+    PV+  
Sbjct: 69  QEKEVLEVENRLQNLKIVKDLRQNPSFRELRMPFNRSNHSLTNNLLSGPGRITVPPVIFY 128

Query: 73  DMEHRQV 79
           D   RQV
Sbjct: 129 DKSTRQV 135


>sp|Q98RA6|SECA_MYCPU Protein translocase subunit SecA OS=Mycoplasma pulmonis (strain UAB
           CTIP) GN=secA PE=3 SV=1
          Length = 867

 Score = 33.1 bits (74), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 46/108 (42%), Gaps = 31/108 (28%)

Query: 60  GAGKPLSS--PVVLADMEHRQVKMQTVNSFLAETPESTEAMVNAKEAGEF-------AAV 110
           G GK ++S  PV L  +E + V + TVN +LAE         +A E GE          V
Sbjct: 103 GEGKTITSIAPVYLNALEKKGVIVSTVNEYLAER--------DAAEMGEVFSFLKMTVGV 154

Query: 111 NVPS------------DVLQSQSSFLAISHLKNNWPMKI--KIESGTN 144
           N PS            D+  S  S L   +L++N    I  K++ G N
Sbjct: 155 NKPSMSPEEKKQIYQCDITYSIHSELGFDYLRDNMVTNINDKVQRGLN 202


>sp|A5DDF4|PRP5_PICGU Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Meyerozyma
           guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 /
           JCM 1539 / NBRC 10279 / NRRL Y-324) GN=PRP5 PE=3 SV=2
          Length = 862

 Score = 31.6 bits (70), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 25/108 (23%), Positives = 50/108 (46%), Gaps = 19/108 (17%)

Query: 25  LSNRIDDLKVDLEWYKEVSRLKNKSYYDSFNNSLGGAGKPLSSPVVLADMEH-----RQV 79
           +S ++DD+  +L+   +    K KS  + FN+  GG G        L +++      R++
Sbjct: 644 MSGKVDDIPAELQSIADKFLKKVKSGEEKFNSGFGGKG--------LENLQERRDNVREI 695

Query: 80  KMQTVNSFLAETPESTEAMVNAK-----EAGEFAAVNVPS-DVLQSQS 121
           +MQ     + ET   + +    K     EA E A + +P  D+++ ++
Sbjct: 696 EMQMYGDKVKETNGVSNSSAGRKALGTPEAAEIAGIKLPDFDIVEGRA 743


>sp|P08799|MYS2_DICDI Myosin-2 heavy chain OS=Dictyostelium discoideum GN=mhcA PE=1 SV=3
          Length = 2116

 Score = 30.8 bits (68), Expect = 8.2,   Method: Composition-based stats.
 Identities = 29/116 (25%), Positives = 56/116 (48%), Gaps = 11/116 (9%)

Query: 7    QGQSELEEGIAERKMVSDLSNRIDDLKVDLEWYKEVSRLKNKSYYDSFNNSLGGAGKPLS 66
            + + +LE+ +AER+   + S++  D ++  + ++EV  L+ +   DS   +L  + K + 
Sbjct: 1617 KSKKKLEQTLAERRAAEEGSSKAADEEIRKQVWQEVDELRAQ--LDSERAALNASEKKIK 1674

Query: 67   SPVVLADMEHRQVKMQTVNSFLAETPESTEAMVNAKEAGEFAAVNVPSDVLQSQSS 122
            S V   D    +VK Q  +  LA+     + +V AK A E     V   + + + S
Sbjct: 1675 SLVAEVD----EVKEQLEDEILAK-----DKLVKAKRALEVELEEVRDQLEEEEDS 1721


>sp|Q94FB9|AB1D_ARATH ABC transporter D family member 1 OS=Arabidopsis thaliana GN=ABCC1
           PE=1 SV=1
          Length = 1337

 Score = 30.8 bits (68), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 7/57 (12%)

Query: 154 ALVSTITYRTALKIRACKLEQGYNYSSSLISICQIVDQHPLFIQLVMAFNSIAFFLS 210
           ALV+T+ +RTAL  R  K+ QG+ + ++ +       + PLF++L+     + F LS
Sbjct: 111 ALVATVVFRTALSNRLAKV-QGFLFRAAFLR------RAPLFLRLISENIMLCFMLS 160


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.319    0.132    0.370 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81,911,013
Number of Sequences: 539616
Number of extensions: 3014211
Number of successful extensions: 8251
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 8251
Number of HSP's gapped (non-prelim): 10
length of query: 249
length of database: 191,569,459
effective HSP length: 115
effective length of query: 134
effective length of database: 129,513,619
effective search space: 17354824946
effective search space used: 17354824946
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)