BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025691
(249 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|B7JW76|TIG_CYAP8 Trigger factor OS=Cyanothece sp. (strain PCC 8801) GN=tig PE=3 SV=1
Length = 455
Score = 58.2 bits (139), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 72/126 (57%), Gaps = 10/126 (7%)
Query: 97 KIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFL 156
K+ E + +I + ++++ +A+++ ++ + LAR+A IPGFR+ KVPR L
Sbjct: 2 KVTQEKLPDSQIGLEIEISAEASKKAYETKVNTLARTAN-IPGFRK------GKVPRQIL 54
Query: 157 IQILGEERVTKFVVQEIVRSTLTDYTKKASL-NVKDKKVTTTQKAEELRKSFYPGNEFGF 215
+Q +G E + +QE++ +L K+ SL ++ D ++ + K +EL + F PG F
Sbjct: 55 LQRIGTEYIKATTLQELIEDSLKAAIKQESLESIGDFELKS--KFDELVQQFKPGEPLTF 112
Query: 216 SAVLEL 221
SA +++
Sbjct: 113 SAAIDV 118
>sp|Q118P4|TIG_TRIEI Trigger factor OS=Trichodesmium erythraeum (strain IMS101) GN=tig
PE=3 SV=1
Length = 485
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 64/116 (55%), Gaps = 8/116 (6%)
Query: 107 KIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVT 166
+I + ++++ + ++ +++++ RSA IPGFR+ KVPR+ LIQ LG+ +
Sbjct: 12 QISLEIEISPEMSKNAYEQIIKKYIRSAN-IPGFRK------GKVPRNILIQRLGKNYIK 64
Query: 167 KFVVQEIVRSTLTDYTKKASLNVKDKKVTTTQKAEELRKSFYPGNEFGFSAVLELE 222
+ +++ + L ++ S+ + T+ EEL K F PG E FSA +++E
Sbjct: 65 AMALDDLINNCLEKAREQESIKAIGQFELKTE-FEELVKDFEPGKEMAFSAKVDVE 119
>sp|Q8YQX9|TIG_NOSS1 Trigger factor OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=tig
PE=3 SV=1
Length = 471
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 68/117 (58%), Gaps = 10/117 (8%)
Query: 107 KIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVT 166
+I + +++T + TQ+ +++V+ NL+R+ IPGFR+ KVPR L+Q LG+ +
Sbjct: 12 QIGLEIEITPEITQKTYEQVIKNLSRTV-NIPGFRK------GKVPRQVLLQRLGKTHIK 64
Query: 167 KFVVQEIVRSTLTDYTKKASL-NVKDKKVTTTQKAEELRKSFYPGNEFGFSAVLELE 222
++E+++ + K+ S+ + ++ ++ ++L S+ PG F+A +++E
Sbjct: 65 AAALEELLQDGIEQAIKQESIAAIGQPRLRSS--FDDLINSYEPGQPLTFTAAVDVE 119
>sp|Q3M725|TIG_ANAVT Trigger factor OS=Anabaena variabilis (strain ATCC 29413 / PCC
7937) GN=tig PE=3 SV=1
Length = 471
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 68/117 (58%), Gaps = 10/117 (8%)
Query: 107 KIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVT 166
+I + +++T + TQ+ +++V+ NL+R+ IPGFR+ KVPR L+Q LG+ +
Sbjct: 12 QIGLEIEITPEITQKTYEQVIKNLSRTV-NIPGFRK------GKVPRQVLLQRLGKTHIK 64
Query: 167 KFVVQEIVRSTLTDYTKKASL-NVKDKKVTTTQKAEELRKSFYPGNEFGFSAVLELE 222
++E+++ + K+ S+ + ++ ++ ++L S+ PG F+A +++E
Sbjct: 65 AAALEELLQDGIEQAIKQESIAAIGQPRLRSS--FDDLINSYEPGQPLTFTAAVDVE 119
>sp|Q8DLI3|TIG_THEEB Trigger factor OS=Thermosynechococcus elongatus (strain BP-1)
GN=tig PE=3 SV=1
Length = 473
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 66/129 (51%), Gaps = 16/129 (12%)
Query: 98 IVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLI 157
+ E + ++ ++++G +Q+V+++V+ +L R +PGFR KG K PR ++
Sbjct: 1 MTTEPRSNSQLLATIEVSGTHSQQVYNQVVNDLLRHTQ-VPGFR--KG----KAPRQLVL 53
Query: 158 QILGEERVTKFVVQEIVRSTLTDYTKKASL----NVKDKKVTTTQKAEELRKSFYPGNEF 213
Q LG ER+ +++++ + +K ++ N++ T EL F+PG F
Sbjct: 54 QQLGRERLRYLAMEKLIEDAVKTAVEKNNIPYLGNLELAGGIT-----ELLDQFHPGENF 108
Query: 214 GFSAVLELE 222
FS ++E
Sbjct: 109 SFSVTFDVE 117
>sp|B0JL93|TIG_MICAN Trigger factor OS=Microcystis aeruginosa (strain NIES-843) GN=tig
PE=3 SV=1
Length = 464
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 68/126 (53%), Gaps = 10/126 (7%)
Query: 97 KIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFL 156
K++ E +I + +++ + T+ ++V+ NLA+S IPGFR KVPR L
Sbjct: 2 KVIQEKLPASQIGLEIEIPAETTKNTHEQVVKNLAKSVN-IPGFR------PGKVPRQIL 54
Query: 157 IQILGEERVTKFVVQEIVRSTLTDYTKKASL-NVKDKKVTTTQKAEELRKSFYPGNEFGF 215
+Q LG + V V++E++ + L K+ + ++ + ++ + K E+L ++ PG F
Sbjct: 55 LQRLGTKAVKAAVIEELIENCLESALKQEGIESLGNPQLLS--KFEDLIAAYEPGKALTF 112
Query: 216 SAVLEL 221
S L++
Sbjct: 113 SVSLDV 118
>sp|Q935Z3|TIG_SYNE7 Trigger factor OS=Synechococcus elongatus (strain PCC 7942) GN=tig
PE=3 SV=1
Length = 474
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 70/127 (55%), Gaps = 10/127 (7%)
Query: 97 KIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFL 156
K+ E ++ ++++++G+ +++V+++ LT L+R PGFR KVPR L
Sbjct: 4 KVTQEKLPASRVGLQIEVSGEQSRQVYERTLTRLSREVR-FPGFR------PGKVPRPVL 56
Query: 157 IQILGEERVTKFVVQEIVRSTLTDYTKKASL-NVKDKKVTTTQKAEELRKSFYPGNEFGF 215
IQ LGE + ++++V+ +L + S+ + + ++++ E L +F PG F F
Sbjct: 57 IQRLGETALKANAIEDLVQQSLESAIAQESIPAIGNYQLSS--DFETLVAAFQPGESFSF 114
Query: 216 SAVLELE 222
A ++++
Sbjct: 115 EASVDVQ 121
>sp|Q5N1P5|TIG_SYNP6 Trigger factor OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 /
SAUG 1402/1) GN=tig PE=3 SV=1
Length = 474
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 70/127 (55%), Gaps = 10/127 (7%)
Query: 97 KIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFL 156
K+ E ++ ++++++G+ +++V+++ LT L+R PGFR KVPR L
Sbjct: 4 KVTQEKLPASRVGLQIEVSGEQSRQVYERTLTRLSREVR-FPGFR------PGKVPRPVL 56
Query: 157 IQILGEERVTKFVVQEIVRSTLTDYTKKASL-NVKDKKVTTTQKAEELRKSFYPGNEFGF 215
IQ LGE + ++++V+ +L + S+ + + ++++ E L +F PG F F
Sbjct: 57 IQRLGETALKANAIEDLVQQSLESAIAQESIPAIGNYQLSS--DFETLVAAFQPGKSFSF 114
Query: 216 SAVLELE 222
A ++++
Sbjct: 115 EASVDVQ 121
>sp|B2IT89|TIG_NOSP7 Trigger factor OS=Nostoc punctiforme (strain ATCC 29133 / PCC
73102) GN=tig PE=3 SV=1
Length = 480
Score = 48.9 bits (115), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 66/117 (56%), Gaps = 10/117 (8%)
Query: 107 KIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVT 166
+I + +++T + T++ +++V+ NLA +A IPGFRR KVPR L+Q LG R+
Sbjct: 12 QIGLEIEITPEITKQTYEQVIKNLASTAN-IPGFRR------GKVPRPILLQRLGTTRIK 64
Query: 167 KFVVQEIVRSTLTDYTKKASL-NVKDKKVTTTQKAEELRKSFYPGNEFGFSAVLELE 222
++E+++ + K+ ++ + ++ ++ E+L ++ PG A +++E
Sbjct: 65 AAALEELIQDGIEQAVKQEAIPAIGQPQLRSS--FEDLINNYEPGKPLTILAAVDVE 119
>sp|Q2JV31|TIG_SYNJA Trigger factor OS=Synechococcus sp. (strain JA-3-3Ab) GN=tig PE=3
SV=1
Length = 557
Score = 47.8 bits (112), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 57/115 (49%), Gaps = 8/115 (6%)
Query: 107 KIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVT 166
++ +++ + D +R ++K L L R+ IPGFR KG K PR+ +I+ +G ERV
Sbjct: 12 RVGLKIVVEADQVKRSYEKTLRQLERNIQ-IPGFR--KG----KAPRNLVIRQVGRERVM 64
Query: 167 KFVVQEIVRSTLTDYTKKASLNVKDKKVTTTQKAEELRKSFYPGNEFGFSAVLEL 221
V +++ + K L+ + K E+L F P +F FS +E+
Sbjct: 65 ASAVDDLINEAIQQALKDTQLH-PISRFELDDKVEQLLDRFNPEADFSFSGYVEV 118
>sp|Q3B0U0|TIG_SYNS9 Trigger factor OS=Synechococcus sp. (strain CC9902) GN=tig PE=3
SV=1
Length = 447
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 63/120 (52%), Gaps = 8/120 (6%)
Query: 97 KIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFL 156
K+ ES+ ++ V V + G+ +++ + +L+RS +PGFR+ KVPR L
Sbjct: 7 KVSTESRPSSRLAVTVTVPGERCTASYEEAIKSLSRSIN-LPGFRK------GKVPRSVL 59
Query: 157 IQILGEERVTKFVVQEIVRSTLTDYTKKASLNVKDKKVTTTQKAEELRKSFYPGNEFGFS 216
+Q LG R+ +++++ S D K+ SL + ++ + L +SF PG+E F+
Sbjct: 60 VQQLGGVRIKATALEKLIDSAWRDAIKQESLEPISQPDLSS-GFDGLLESFNPGDELTFT 118
>sp|B1XL18|TIG_SYNP2 Trigger factor OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 /
PR-6) GN=tig PE=3 SV=1
Length = 454
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 46/82 (56%), Gaps = 7/82 (8%)
Query: 97 KIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFL 156
K++ E ++ + +++ D TQ+ +D + LAR+ +PGFR+ KVP+ L
Sbjct: 2 KVIQEKLPASQVGLEIEVPADVTQKAYDDTVRKLARTVN-LPGFRK------GKVPKQIL 54
Query: 157 IQILGEERVTKFVVQEIVRSTL 178
IQ LG R+ V+++++ +L
Sbjct: 55 IQRLGPNRIKASVLEDLIDDSL 76
>sp|Q7NDP0|TIG_GLOVI Trigger factor OS=Gloeobacter violaceus (strain PCC 7421) GN=tig
PE=3 SV=1
Length = 461
Score = 44.3 bits (103), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 64/126 (50%), Gaps = 8/126 (6%)
Query: 97 KIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFL 156
K+ E ++ + V++ G+ +++ ++K++ + R+A IPGFR K PR +
Sbjct: 2 KVTQEKLPRSQMGLNVEVEGEKSKQAYEKLVRDTMRTAR-IPGFR------PGKAPRQLV 54
Query: 157 IQILGEERVTKFVVQEIVRSTLTDYTKKASLNVKDKKVTTTQKAEELRKSFYPGNEFGFS 216
+Q G+ER+ ++ ++ S+L + ++ S+ + EEL + PG F
Sbjct: 55 LQFYGKERLRAQALENLIDSSLKEAIEQESI-ASLGNLQLRDSFEELLGRYQPGEPLSFK 113
Query: 217 AVLELE 222
A ++++
Sbjct: 114 AAVDVQ 119
>sp|Q3ANI7|TIG_SYNSC Trigger factor OS=Synechococcus sp. (strain CC9605) GN=tig PE=3
SV=1
Length = 469
Score = 44.3 bits (103), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 63/120 (52%), Gaps = 8/120 (6%)
Query: 97 KIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFL 156
K+ E++ ++ V V + G+ + ++ +T+L+RS +PGFR+ KVPR L
Sbjct: 7 KVTTEARPSSRLAVTVTVPGERCKTSYEDAITSLSRSIN-LPGFRK------GKVPRTVL 59
Query: 157 IQILGEERVTKFVVQEIVRSTLTDYTKKASLNVKDKKVTTTQKAEELRKSFYPGNEFGFS 216
+Q LG R+ +++++ + D ++ SL + ++ + L +SF PG E F+
Sbjct: 60 VQQLGGVRIKATALEKLIDNAWRDAIQQESLEPISQPDLSS-GFDGLLESFEPGKELTFT 118
>sp|A5GHT2|TIG_SYNPW Trigger factor OS=Synechococcus sp. (strain WH7803) GN=tig PE=3
SV=1
Length = 481
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 57/114 (50%), Gaps = 8/114 (7%)
Query: 97 KIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFL 156
K+ S+ ++ V V + + +Q +++ +T L+RS +PGFR KG KVPR L
Sbjct: 7 KVTTTSRPGSRLAVEVAVPAERSQASYEEAITRLSRSVN-LPGFR--KG----KVPRTVL 59
Query: 157 IQILGEERVTKFVVQEIVRSTLTDYTKKASLNVKDKKVTTTQKAEELRKSFYPG 210
+Q LG R+ ++ +V S D + ++ + + EEL +F PG
Sbjct: 60 VQQLGALRIRATALESLVESVWRDALAQETIEALGQP-ELSGSFEELLDTFKPG 112
>sp|Q55511|TIG_SYNY3 Trigger factor OS=Synechocystis sp. (strain PCC 6803 / Kazusa)
GN=tig PE=3 SV=1
Length = 471
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 50/93 (53%), Gaps = 7/93 (7%)
Query: 97 KIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFL 156
K+ E + ++ + +++ A+++V++ V+ L R+ IPGFRR KVPR +
Sbjct: 2 KVTQEKLPDSQVGLEIEIPATASKKVYENVVKKLTRTVN-IPGFRR------GKVPRAIV 54
Query: 157 IQILGEERVTKFVVQEIVRSTLTDYTKKASLNV 189
IQ LG+ + ++E++ ++ K+ L +
Sbjct: 55 IQRLGQSYIKATAIEELIDDSIKAAVKQEELPI 87
>sp|Q2JQ33|TIG_SYNJB Trigger factor OS=Synechococcus sp. (strain JA-2-3B'a(2-13)) GN=tig
PE=3 SV=1
Length = 556
Score = 41.6 bits (96), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 57/115 (49%), Gaps = 8/115 (6%)
Query: 107 KIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVT 166
++ +++ + D +R ++K L L ++ IPGFR KG K PR+ +++ +G ER+
Sbjct: 12 RVGLKIVVEADRVKRSYEKTLRQLEQNIQ-IPGFR--KG----KAPRNLVVRQVGRERIL 64
Query: 167 KFVVQEIVRSTLTDYTKKASLNVKDKKVTTTQKAEELRKSFYPGNEFGFSAVLEL 221
V +++ + K+A L + + +L F P +F FS +E+
Sbjct: 65 ASAVDDLINEAIQQAFKEAQLT-PISRFELDDEVGQLLAQFNPEADFSFSGYVEV 118
>sp|Q0IE18|TIG_SYNS3 Trigger factor OS=Synechococcus sp. (strain CC9311) GN=tig PE=3
SV=1
Length = 449
Score = 39.7 bits (91), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 51/104 (49%), Gaps = 8/104 (7%)
Query: 107 KIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVT 166
++ V V + + +Q ++ ++ L+RS +PGFR+ KVPR L+Q LG R+
Sbjct: 17 RLAVEVAIPAERSQASYEAAISQLSRSVN-LPGFRK------GKVPRSVLVQQLGGLRIR 69
Query: 167 KFVVQEIVRSTLTDYTKKASLNVKDKKVTTTQKAEELRKSFYPG 210
++ +V + D K+ ++ + E L +SF PG
Sbjct: 70 ATALENLVDAIWRDTIKQETIEALGQP-EVDGGYEALLESFEPG 112
>sp|Q50833|CSG_METVO S-layer protein (Fragment) OS=Methanococcus voltae GN=sla PE=1 SV=2
Length = 576
Score = 37.4 bits (85), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 12/109 (11%)
Query: 99 VVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPG------------FRREKGG 146
+++S DE KI +++ G FDKV A PG ++ G
Sbjct: 296 ILKSGDEYKISLQLMKDGKVVAEKFDKVSATSALKMIYTPGNIGIVVNEAWENVGQDYGY 355
Query: 147 KTTKVPRDFLIQILGEERVTKFVVQEIVRSTLTDYTKKASLNVKDKKVT 195
+T + +D + LGEE + + V I + T TD TK + + + D K+T
Sbjct: 356 GSTLITKDVIALELGEEYIPDWEVVTIEKDTTTDNTKDSKMTLSDDKIT 404
>sp|A5GQ11|TIG_SYNR3 Trigger factor OS=Synechococcus sp. (strain RCC307) GN=tig PE=3
SV=1
Length = 491
Score = 37.0 bits (84), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 53/107 (49%), Gaps = 8/107 (7%)
Query: 107 KIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVT 166
++ + V + D + ++ + L+RS +PGFR+ +VP+ L+Q +G RV
Sbjct: 16 RLALEVGVPADRCKASYEAAVERLSRSVR-LPGFRK------GRVPKPVLLQQIGPLRVK 68
Query: 167 KFVVQEIVRSTLTDYTKKASLNVKDKKVTTTQKAEELRKSFYPGNEF 213
++++V S L D ++ + V + + + EEL + F P E
Sbjct: 69 ASALEDLVDSVLRDAVEQEKVEVLGQP-SLSGNFEELLEKFDPAKEL 114
>sp|Q7Z992|SST6_SCHPO ESCRT-I complex subunit vps23 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=sst6 PE=3 SV=2
Length = 487
Score = 37.0 bits (84), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 42/86 (48%), Gaps = 15/86 (17%)
Query: 88 EDLITVKDAKIVVESQDEDKI-QVRVDLTGDATQRVFDKVLTNLA--------RSAPPIP 138
ED T++ I V++QDE+KI +VR+ L+ A FDK + A S PPI
Sbjct: 40 EDTFTLQAINIEVDTQDENKIEEVRIYLSTPA----FDKTILTSACITVRSYYPSQPPIV 95
Query: 139 GFRREKGGKTTKVPRDFLIQILGEER 164
EKGGK L+Q+ ER
Sbjct: 96 QLLDEKGGKHKYT--SLLLQLWKNER 119
>sp|Q31IY8|RPOC_THICR DNA-directed RNA polymerase subunit beta' OS=Thiomicrospira crunogena
(strain XCL-2) GN=rpoC PE=3 SV=1
Length = 1408
Score = 35.8 bits (81), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 66/148 (44%), Gaps = 21/148 (14%)
Query: 99 VVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKV---PRDF 155
VV E K + R+ +T D+ ++ + L RS G R EKG P D
Sbjct: 1159 VVGFGKETKGKQRLVITQDSGEQ--HETLIPKWRSVDVFEGERVEKGDVVVDGNPNPHDI 1216
Query: 156 LIQILGEERVTKFVVQEIVRSTLTDYTKKASLNVKDKKVTTTQKAEELRK---------S 206
L ++LG ER+TK++V E+ D + + + DK + T + + LRK S
Sbjct: 1217 L-RLLGVERLTKYIVDEV-----QDVYRLQGVRINDKHIETVVR-QMLRKVEVRSTGDTS 1269
Query: 207 FYPGNEFGFSAVLELEKSEVEESETETS 234
G + F+ VLE+ + +E E S
Sbjct: 1270 LIKGEQAEFARVLEMNEKVSDEGSVEAS 1297
>sp|Q9RT21|TIG_DEIRA Trigger factor OS=Deinococcus radiodurans (strain ATCC 13939 / DSM
20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 /
R1 / VKM B-1422) GN=tig PE=1 SV=3
Length = 465
Score = 34.7 bits (78), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 46/98 (46%), Gaps = 17/98 (17%)
Query: 102 SQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILG 161
S++ +K++ +V + R +D+V LAR +PGFR K PR +
Sbjct: 6 SKEGNKVEFKVSVPAAEVNRAYDQVWAGLARDV-RVPGFR------PGKAPRKVI----- 53
Query: 162 EERVTKFVVQEIVRSTL--TDYT---KKASLNVKDKKV 194
E RV K V+ VR L T Y+ ++ LN+ D V
Sbjct: 54 ENRVGKGYVESQVRDRLLETHYSQGLRELGLNLVDATV 91
>sp|Q1J199|TIG_DEIGD Trigger factor OS=Deinococcus geothermalis (strain DSM 11300)
GN=tig PE=3 SV=1
Length = 449
Score = 33.9 bits (76), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 35/77 (45%), Gaps = 12/77 (15%)
Query: 102 SQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILG 161
S++ +K+ RV + R +D+V LAR +PGFR K PR L
Sbjct: 6 SKEGNKVSFRVAVPAAEVNRAYDQVWAGLARDV-RVPGFR------PGKAPRKVL----- 53
Query: 162 EERVTKFVVQEIVRSTL 178
E RV K V+ VR L
Sbjct: 54 ESRVGKGYVENEVRDRL 70
>sp|A9BD99|TIG_PROM4 Trigger factor OS=Prochlorococcus marinus (strain MIT 9211) GN=tig
PE=3 SV=1
Length = 471
Score = 33.5 bits (75), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/78 (21%), Positives = 45/78 (57%), Gaps = 7/78 (8%)
Query: 97 KIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFL 156
K+ +S + ++ V ++++ + + + L+ L+++A +PGFR+ KVP+ L
Sbjct: 7 KVKTKSMPDSRLAVELEISAKQCKESYQQALSKLSKTAN-LPGFRK------GKVPQAVL 59
Query: 157 IQILGEERVTKFVVQEIV 174
+Q +G +R+ +++++
Sbjct: 60 LQQVGAKRIQASAIEKLL 77
>sp|C3MQ42|RNP2_SULIL Ribonuclease P protein component 2 OS=Sulfolobus islandicus (strain
L.S.2.15 / Lassen #1) GN=rnp2 PE=3 SV=1
Length = 143
Score = 32.7 bits (73), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Query: 144 KGGKTTKVPRDFLIQILGEERVTKFVVQEIVRSTLTDYTKKASLNVKDKKVTTTQKAEEL 203
K K + R + ++ E +V ++ +VR++L D LN+ + KV T + E+
Sbjct: 35 KNKKIVRAKRYIVFYVIAESKVKSDDLERVVRNSLKDLLGNVWLNIANPKVVTYR--EDT 92
Query: 204 RKSFYPGNEFGFSAVL 219
++ N G+ AVL
Sbjct: 93 QEGIISTNRIGYKAVL 108
>sp|A2AV37|EX3L1_DANRE Exocyst complex component 3-like protein OS=Danio rerio GN=exoc3l1
PE=2 SV=1
Length = 780
Score = 32.7 bits (73), Expect = 2.8, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 105 EDKIQVRVDLTGDATQRVFDKVLTNLARSAPPI-PGFR 141
E+ + V +D+ GD + V VL L +SAPP+ PG+R
Sbjct: 720 EEHVSVLLDIRGDVPKEVRKSVLDFLDQSAPPLPPGYR 757
>sp|C3NEC5|RNP2_SULIY Ribonuclease P protein component 2 OS=Sulfolobus islandicus (strain
Y.G.57.14 / Yellowstone #1) GN=rnp2 PE=3 SV=1
Length = 143
Score = 32.3 bits (72), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Query: 144 KGGKTTKVPRDFLIQILGEERVTKFVVQEIVRSTLTDYTKKASLNVKDKKVTTTQKAEEL 203
K K + R + ++ E +V ++ +VR++L D LN+ + KV T + E+
Sbjct: 35 KNKKIVRAKRYIVFYVIAESKVKGDDLERVVRNSLKDLLGNVWLNIANPKVVTYR--EDT 92
Query: 204 RKSFYPGNEFGFSAVL 219
++ N G+ AVL
Sbjct: 93 QEGIISTNRIGYKAVL 108
>sp|C3NHC7|RNP2_SULIN Ribonuclease P protein component 2 OS=Sulfolobus islandicus (strain
Y.N.15.51 / Yellowstone #2) GN=rnp2 PE=3 SV=1
Length = 143
Score = 32.3 bits (72), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Query: 144 KGGKTTKVPRDFLIQILGEERVTKFVVQEIVRSTLTDYTKKASLNVKDKKVTTTQKAEEL 203
K K + R + ++ E +V ++ +VR++L D LN+ + KV T + E+
Sbjct: 35 KNKKIVRAKRYIVFYVIAESKVKGDDLERVVRNSLKDLLGNVWLNIANPKVVTYR--EDT 92
Query: 204 RKSFYPGNEFGFSAVL 219
++ N G+ AVL
Sbjct: 93 QEGIISTNRIGYKAVL 108
>sp|C3MVG0|RNP2_SULIM Ribonuclease P protein component 2 OS=Sulfolobus islandicus (strain
M.14.25 / Kamchatka #1) GN=rnp2 PE=3 SV=1
Length = 143
Score = 32.3 bits (72), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Query: 144 KGGKTTKVPRDFLIQILGEERVTKFVVQEIVRSTLTDYTKKASLNVKDKKVTTTQKAEEL 203
K K + R + ++ E +V ++ +VR++L D LN+ + KV T + E+
Sbjct: 35 KNKKIVRAKRYIVFYVIAESKVKGDDLERVVRNSLKDLLGNVWLNIANPKVVTYR--EDT 92
Query: 204 RKSFYPGNEFGFSAVL 219
++ N G+ AVL
Sbjct: 93 QEGIISTNRIGYKAVL 108
>sp|C4KHD8|RNP2_SULIK Ribonuclease P protein component 2 OS=Sulfolobus islandicus (strain
M.16.4 / Kamchatka #3) GN=rnp2 PE=3 SV=1
Length = 143
Score = 32.3 bits (72), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Query: 144 KGGKTTKVPRDFLIQILGEERVTKFVVQEIVRSTLTDYTKKASLNVKDKKVTTTQKAEEL 203
K K + R + ++ E +V ++ +VR++L D LN+ + KV T + E+
Sbjct: 35 KNKKIVRAKRYIVFYVIAESKVKGDDLERVVRNSLKDLLGNVWLNIANPKVVTYK--EDT 92
Query: 204 RKSFYPGNEFGFSAVL 219
++ N G+ AVL
Sbjct: 93 QEGIISTNRIGYKAVL 108
>sp|C3N5Q9|RNP2_SULIA Ribonuclease P protein component 2 OS=Sulfolobus islandicus (strain
M.16.27) GN=rnp2 PE=3 SV=1
Length = 143
Score = 32.3 bits (72), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Query: 144 KGGKTTKVPRDFLIQILGEERVTKFVVQEIVRSTLTDYTKKASLNVKDKKVTTTQKAEEL 203
K K + R + ++ E +V ++ +VR++L D LN+ + KV T + E+
Sbjct: 35 KNKKIVRAKRYIVFYVIAESKVKGDDLERVVRNSLKDLLGNVWLNIANPKVVTYR--EDT 92
Query: 204 RKSFYPGNEFGFSAVL 219
++ N G+ AVL
Sbjct: 93 QEGIISTNRIGYKAVL 108
>sp|Q7V991|TIG_PROMM Trigger factor OS=Prochlorococcus marinus (strain MIT 9313) GN=tig
PE=3 SV=1
Length = 479
Score = 32.3 bits (72), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 43/81 (53%), Gaps = 7/81 (8%)
Query: 107 KIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVT 166
++ V V + + Q ++ +T L+R+ +PGFR KG KVPR L+Q +G R+
Sbjct: 17 RLAVEVAVPAERCQANYEAAVTRLSRTTN-LPGFR--KG----KVPRAVLLQQIGPVRIR 69
Query: 167 KFVVQEIVRSTLTDYTKKASL 187
++ +V + + ++ S+
Sbjct: 70 ATALESLVDAVWREVLEQESI 90
>sp|P56994|HEM1_NEIMB Glutamyl-tRNA reductase OS=Neisseria meningitidis serogroup B
(strain MC58) GN=hemA PE=3 SV=1
Length = 415
Score = 31.6 bits (70), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 53 VRPSLYCNPLMRRVQHVLKTVSAVDSGVEVSITEPEDLITVKDAKIVVESQD 104
+RP LY + V+H + +DS V + EP+ L +KDA V + Q+
Sbjct: 79 IRPYLYALDMQETVRHAFRVACGLDSMV---LGEPQILGQIKDAVRVAQEQE 127
>sp|Q1WU82|TIG_LACS1 Trigger factor OS=Lactobacillus salivarius (strain UCC118) GN=tig
PE=3 SV=1
Length = 436
Score = 30.8 bits (68), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 6/60 (10%)
Query: 129 NLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVTKFVVQEIVRSTLTDYTKKASLN 188
N + + +PGFR+ KVPR ++ GEE + + + +++ ++ K+A +N
Sbjct: 34 NRVKKSLNVPGFRK------GKVPRQIFNKMYGEEALYQEALNDLLPEAYSNAVKEADIN 87
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.129 0.353
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,255,354
Number of Sequences: 539616
Number of extensions: 3361899
Number of successful extensions: 12910
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 83
Number of HSP's that attempted gapping in prelim test: 12787
Number of HSP's gapped (non-prelim): 181
length of query: 249
length of database: 191,569,459
effective HSP length: 115
effective length of query: 134
effective length of database: 129,513,619
effective search space: 17354824946
effective search space used: 17354824946
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 60 (27.7 bits)