Query 025691
Match_columns 249
No_of_seqs 147 out of 1120
Neff 4.5
Searched_HMMs 46136
Date Fri Mar 29 08:28:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025691.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025691hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05697 Trigger_N: Bacterial 99.9 1.6E-25 3.5E-30 184.5 15.1 113 96-223 1-113 (145)
2 COG0544 Tig FKBP-type peptidyl 99.9 1.7E-23 3.7E-28 202.0 14.9 130 96-240 1-136 (441)
3 PRK01490 tig trigger factor; P 99.9 1.2E-22 2.6E-27 193.0 14.4 114 96-224 1-114 (435)
4 TIGR00115 tig trigger factor. 99.8 4E-20 8.6E-25 174.3 12.7 102 108-224 1-102 (408)
5 PHA00440 host protein H-NS-int 74.1 36 0.00078 27.6 8.7 62 117-186 19-82 (98)
6 PF11247 DUF2675: Protein of u 67.0 63 0.0014 26.2 8.7 69 109-186 12-82 (98)
7 cd04920 ACT_AKiii-DAPDC_2 ACT 43.4 35 0.00075 24.2 3.4 58 73-130 3-61 (63)
8 cd04915 ACT_AK-Ectoine_2 ACT d 38.4 39 0.00084 24.2 3.0 58 73-130 5-64 (66)
9 PF05698 Trigger_C: Bacterial 37.5 1.4E+02 0.0031 23.9 6.5 71 110-191 37-113 (162)
10 cd04917 ACT_AKiii-LysC-EC_2 AC 35.2 69 0.0015 22.2 3.8 58 73-130 4-62 (64)
11 PF06857 ACP: Malonate decarbo 33.9 1.6E+02 0.0035 23.1 6.0 44 95-139 15-59 (87)
12 cd04937 ACT_AKi-DapG-BS_2 ACT 31.8 45 0.00097 23.4 2.4 58 73-130 4-62 (64)
13 KOG3018 Malonyl-CoA decarboxyl 31.5 28 0.0006 33.3 1.6 21 122-142 183-212 (362)
14 COG0199 RpsN Ribosomal protein 30.8 31 0.00066 25.6 1.4 18 124-142 41-58 (61)
15 PF10458 Val_tRNA-synt_C: Valy 30.7 42 0.0009 24.4 2.1 33 122-162 15-47 (66)
16 cd04890 ACT_AK-like_1 ACT doma 24.9 67 0.0015 21.9 2.3 41 90-130 21-61 (62)
17 KOG2801 Probable Rab-GAPs [Int 24.0 2.1E+02 0.0046 28.0 6.1 39 152-191 282-320 (559)
18 PF11000 DUF2840: Protein of u 23.9 84 0.0018 27.2 3.1 43 137-195 75-117 (149)
19 cd04911 ACT_AKiii-YclM-BS_1 AC 23.8 58 0.0013 24.9 1.9 46 90-135 22-68 (76)
20 PRK13253 citrate lyase subunit 22.5 3.5E+02 0.0076 21.5 6.1 45 95-140 16-61 (92)
21 PF01077 NIR_SIR: Nitrite and 20.9 1.7E+02 0.0036 23.9 4.3 47 112-171 103-151 (157)
22 COG2036 HHT1 Histones H3 and H 20.8 2.2E+02 0.0048 22.6 4.7 32 150-182 22-53 (91)
23 cd04922 ACT_AKi-HSDH-ThrA_2 AC 20.1 1.4E+02 0.003 20.1 3.1 58 73-130 4-64 (66)
No 1
>PF05697 Trigger_N: Bacterial trigger factor protein (TF); InterPro: IPR008881 In the Escherichia coli cytosol, a fraction of the newly synthesised proteins requires the activity of molecular chaperones for folding to the native state. The major chaperones implicated in this folding process are the ribosome-associated Trigger Factor (TF), and the DnaK and GroEL chaperones with their respective co-chaperones. Trigger Factor is an ATP-independent chaperone and displays chaperone and peptidyl-prolyl-cis-trans-isomerase (PPIase) activities in vitro. It is composed of at least three domains, an N-terminal domain which mediates association with the large ribosomal subunit, a central substrate binding and PPIase domain with homology to FKBP proteins, and a C-terminal domain of unknown function. The positioning of TF at the peptide exit channel, together with its ability to interact with nascent chains as short as 57 residues renders TF a prime candidate for being the first chaperone that binds to the nascent polypeptide chains []. This group of sequences contain the ribosomal subunit association domain.; GO: 0006457 protein folding, 0015031 protein transport; PDB: 2D3O_1 1W26_A 1P9Y_A 1OMS_C 1T11_A 3GU0_A 2NSB_A 2NSC_A 3GTY_X.
Probab=99.93 E-value=1.6e-25 Score=184.49 Aligned_cols=113 Identities=25% Similarity=0.548 Sum_probs=101.4
Q ss_pred cEEEEEecCCceEEEEEEeCHHHHHHHHHHHHHHHhhhCCCCCCcccCCCCCCCCCcHHHHHHHhCHHHHHHHHHHHHHH
Q 025691 96 AKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVTKFVVQEIVR 175 (249)
Q Consensus 96 MkVtve~le~~kikLtVeVp~eevq~~~dkalkklaK~akpIPGFRk~kGgk~~KVP~~VIek~yG~e~V~~EaieelI~ 175 (249)
|+++++..+++.+.++|+|+++++++++++++++++++++ |||||| | |||+++|+++||.+ |+.++++++++
T Consensus 1 M~v~~~~~~~~~~~~~v~v~~~~~~~~~~~~l~~~~k~~~-ipGFRk--G----K~P~~vi~~~~g~~-i~~~~~~~~~~ 72 (145)
T PF05697_consen 1 MKVTVEKIEDSKVKLEVEVPAEEVEKAYEKALKELAKKVK-IPGFRK--G----KAPRNVIEKRYGKE-IREEAIEELLQ 72 (145)
T ss_dssp -EEEEEEESTTEEEEEEEE-HHHHHHHHHHHHHHHHTTTT-BTTS-T--T----SS-HHHHHHHHCHH-HHHHHHHHHHH
T ss_pred CccEEEECCCcEEEEEEEECHHHHHHHHHHHHHHHHhhCC-CCCCCC--C----CCCHHHHHHHHHHH-HHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999 999999 9 99999999999996 99999999999
Q ss_pred HHHHHHHHHcCCcccCCCceeehhhhhhhhcccCCCcEEEEEEEEeec
Q 025691 176 STLTDYTKKASLNVKDKKVTTTQKAEELRKSFYPGNEFGFSAVLELEK 223 (249)
Q Consensus 176 ~t~~eAleee~L~pvg~~P~i~~~~eel~~~f~~g~~fsFtv~veV~~ 223 (249)
.+|.+|+++++++|++ .|.+. ...+++|++|+|++.|++.+
T Consensus 73 ~~~~~~~~~~~~~~i~-~p~i~------~~~~~~~~~~~~~~~~~~~P 113 (145)
T PF05697_consen 73 EAYEEAIKEEKIKPIG-DPEIE------EKDFKEGEDFEFEVEFEVFP 113 (145)
T ss_dssp HHHHHHHHHTTS-ESS-EEEEE------EEEEETTS-EEEEEEEEE--
T ss_pred HHHHHHHHHcCCCccc-ccccc------ccccccCCCEEEEEEEEecC
Confidence 9999999999999999 99885 36788999999999999973
No 2
>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=1.7e-23 Score=202.00 Aligned_cols=130 Identities=28% Similarity=0.468 Sum_probs=119.1
Q ss_pred cEEEEEecCCceEEEEEEeCHHHHHHHHHHHHHHHhhhCCCCCCcccCCCCCCCCCcHHHHHHHhCHHHHHHHHHHHHHH
Q 025691 96 AKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVTKFVVQEIVR 175 (249)
Q Consensus 96 MkVtve~le~~kikLtVeVp~eevq~~~dkalkklaK~akpIPGFRk~kGgk~~KVP~~VIek~yG~e~V~~EaieelI~ 175 (249)
|++++++++++.+.|+|+||++++++.+++++++++++++ |||||| | |||+.||+++|| +.|++++++++|+
T Consensus 1 M~v~~e~~~~~~~~l~v~vp~~~~~~~~~~~~~~~~k~v~-IpGFRk--G----KvP~~ii~~ryg-~~v~~d~~~~ll~ 72 (441)
T COG0544 1 MKVTVEKLEGLEVRLTVEVPAEEIKKALDKALKKLAKKVK-IPGFRK--G----KVPRKVIEQRYG-EAVRQDVLNELLP 72 (441)
T ss_pred CCeeeeecCCcEEEEEEEECHHHHHHHHHHHHHHHHhhCc-CCCCCC--C----CCCHHHHHHHHh-HHHHHHHHHHHHH
Confidence 8899999999999999999999999999999999999999 999999 9 999999999999 5799999999999
Q ss_pred HHHHHHHHHcCCcccCCCceeehhhhhhhhcccCCCcEEEEEEEEee------cCCcccccccccCCCCCc
Q 025691 176 STLTDYTKKASLNVKDKKVTTTQKAEELRKSFYPGNEFGFSAVLELE------KSEVEESETETSSSSSSD 240 (249)
Q Consensus 176 ~t~~eAleee~L~pvg~~P~i~~~~eel~~~f~~g~~fsFtv~veV~------~~E~~e~~~~~~~~~~~~ 240 (249)
.+|.+|+++++|+|++ +|.+. ...++.|++|.|++.++|+ .+.+.+++..+.+.++.|
T Consensus 73 ~~~~~a~~e~~~~~~~-~p~~~------~~~~e~~~~~~f~~~~ev~Pev~l~d~~~i~v~~~~~ev~d~d 136 (441)
T COG0544 73 EAFEEAIKEEGLKPAG-QPEIE------ITEFEKGEDFEFTAEVEVYPEVELGDYKGIEVEKPVVEVTDED 136 (441)
T ss_pred HHHHHHHHHhCcCcCC-CCCcc------cccccCCCceEEEEEEEEeeceecCccccceeecCCcccCHHH
Confidence 9999999999999999 99765 3578899999999999998 456777777777777443
No 3
>PRK01490 tig trigger factor; Provisional
Probab=99.89 E-value=1.2e-22 Score=192.97 Aligned_cols=114 Identities=23% Similarity=0.428 Sum_probs=107.9
Q ss_pred cEEEEEecCCceEEEEEEeCHHHHHHHHHHHHHHHhhhCCCCCCcccCCCCCCCCCcHHHHHHHhCHHHHHHHHHHHHHH
Q 025691 96 AKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVTKFVVQEIVR 175 (249)
Q Consensus 96 MkVtve~le~~kikLtVeVp~eevq~~~dkalkklaK~akpIPGFRk~kGgk~~KVP~~VIek~yG~e~V~~EaieelI~ 175 (249)
|+++++.++++++.|+|+||+++++.++++++++++++++ |||||| | |||++||+++||++ |++++++++|+
T Consensus 1 M~v~~~~~~~~~~~l~v~v~~~~~~~~~~~~~~~~~k~~~-ipGFRk--G----kvP~~ii~k~~g~~-i~~e~~~~li~ 72 (435)
T PRK01490 1 MQVTVEKLEGLERRLTITVPAEEIEKAVDKALKKLAKTVR-IPGFRK--G----KVPRKIVEQRYGES-VRQEALNDLLP 72 (435)
T ss_pred CcceEEEcCCcEEEEEEEEcHHHHHHHHHHHHHHHHhhCc-CCCccC--C----CCCHHHHHHHHhHH-HHHHHHHHHHH
Confidence 8899999999999999999999999999999999999999 999999 9 99999999999985 99999999999
Q ss_pred HHHHHHHHHcCCcccCCCceeehhhhhhhhcccCCCcEEEEEEEEeecC
Q 025691 176 STLTDYTKKASLNVKDKKVTTTQKAEELRKSFYPGNEFGFSAVLELEKS 224 (249)
Q Consensus 176 ~t~~eAleee~L~pvg~~P~i~~~~eel~~~f~~g~~fsFtv~veV~~~ 224 (249)
.+|.+|+++++|+|++ +|.+.. ..++++++|+|+++|+|+|.
T Consensus 73 ~~~~~~i~~~~~~~~~-~p~i~~------~~~~~~~~~~~~~~~~v~Pe 114 (435)
T PRK01490 73 EAYEEAIKEEGIRPAG-QPEIEP------TEEEKGKDLEFTAEVEVYPE 114 (435)
T ss_pred HHHHHHHHHcCCCcCC-CCcccc------cccCCCCcEEEEEEeeecCC
Confidence 9999999999999999 999862 45778899999999999843
No 4
>TIGR00115 tig trigger factor. Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity. This protein is found in a single copy in virtually every bacterial genome.
Probab=99.83 E-value=4e-20 Score=174.30 Aligned_cols=102 Identities=25% Similarity=0.469 Sum_probs=95.1
Q ss_pred EEEEEEeCHHHHHHHHHHHHHHHhhhCCCCCCcccCCCCCCCCCcHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 025691 108 IQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVTKFVVQEIVRSTLTDYTKKASL 187 (249)
Q Consensus 108 ikLtVeVp~eevq~~~dkalkklaK~akpIPGFRk~kGgk~~KVP~~VIek~yG~e~V~~EaieelI~~t~~eAleee~L 187 (249)
+.|+|+||+++++..+++++++++++++ |||||| | |||++||+++||+ .|+.++++++|+.+|.+|+++++|
T Consensus 1 ~~l~v~v~~~~~~~~~~k~~~~~~k~~~-ipGFRk--G----KvP~~~i~k~~g~-~i~~e~~~~li~~~~~~~~~~~~~ 72 (408)
T TIGR00115 1 RKLTVEVPAEEVEEEVDKALKELAKKVK-IPGFRK--G----KVPRSVVEKRYGK-EVRQEALNELLQEAFSEAVKEEKI 72 (408)
T ss_pred CeEEEEECHHHHHHHHHHHHHHHHhhCC-CCCccC--C----CCCHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3689999999999999999999999999 999999 9 9999999999998 599999999999999999999999
Q ss_pred cccCCCceeehhhhhhhhcccCCCcEEEEEEEEeecC
Q 025691 188 NVKDKKVTTTQKAEELRKSFYPGNEFGFSAVLELEKS 224 (249)
Q Consensus 188 ~pvg~~P~i~~~~eel~~~f~~g~~fsFtv~veV~~~ 224 (249)
+|++ +|.+. ...+.+|++|+|+++|+++|.
T Consensus 73 ~~~~-~p~~~------~~~~~~~~~~~~~~~~~v~Pe 102 (408)
T TIGR00115 73 RPIG-QPEIE------VKEIEDGKDLEFTAEFEVYPE 102 (408)
T ss_pred CcCC-CCccc------cccccCCCCEEEEEEEEecCc
Confidence 9999 99986 246778999999999999843
No 5
>PHA00440 host protein H-NS-interacting protein
Probab=74.08 E-value=36 Score=27.56 Aligned_cols=62 Identities=23% Similarity=0.470 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHhhhCCCCCCcccCCCCCCCCCcHHHHHHHh--CHHHHHHHHHHHHHHHHHHHHHHHcC
Q 025691 117 DATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQIL--GEERVTKFVVQEIVRSTLTDYTKKAS 186 (249)
Q Consensus 117 eevq~~~dkalkklaK~akpIPGFRk~kGgk~~KVP~~VIek~y--G~e~V~~EaieelI~~t~~eAleee~ 186 (249)
.+.++.+.+.|.+|++.+. - |-+...--+.+|.|-+ |.+.+...++++=|.+.+.+.+.+..
T Consensus 19 se~e~~~~e~l~~Lak~v~------~--GE~~~~~~re~lvqaLT~G~egai~F~~k~giRe~IKe~~~E~~ 82 (98)
T PHA00440 19 SETEAILEEDILDLAKQAG------A--GEEVNPKDKELLVQALTHGPEGAAAFAVRQGIREAIKDMHEEST 82 (98)
T ss_pred hHHHHHHHHHHHHHHhhcC------C--cccCChHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHhHhhc
Confidence 5778899999999999996 3 5444445668888865 77777777777777776666666544
No 6
>PF11247 DUF2675: Protein of unknown function (DUF2675) ; InterPro: IPR022611 Members in this family of proteins include Bacteriophage T7 gene 5.5; they have no known function.
Probab=67.00 E-value=63 Score=26.16 Aligned_cols=69 Identities=26% Similarity=0.437 Sum_probs=46.4
Q ss_pred EEEEEeCHHHHHHHHHHHHHHHhhhCCCCCCcccCCCCCCCCCcHHHHHHHh--CHHHHHHHHHHHHHHHHHHHHHHHcC
Q 025691 109 QVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQIL--GEERVTKFVVQEIVRSTLTDYTKKAS 186 (249)
Q Consensus 109 kLtVeVp~eevq~~~dkalkklaK~akpIPGFRk~kGgk~~KVP~~VIek~y--G~e~V~~EaieelI~~t~~eAleee~ 186 (249)
.++..++.+.. +.+.+-+-.++|++- . |-|.+.--+.+|.+-+ |.+.+...+++.-+.+.+.+.+.+..
T Consensus 12 ~vtav~~se~e-~~~~e~ll~Lak~v~------~--GE~~~~~~re~l~qaLT~G~egav~f~~k~g~R~~IKe~~~E~s 82 (98)
T PF11247_consen 12 DVTAVIDSEQE-EEFEEDLLELAKKVG------A--GEKVSGFQREMLVQALTHGPEGAVAFVVKQGIREAIKEMLSEYS 82 (98)
T ss_pred EEEEEeCHHHH-HHHHHHHHHHHhhcC------C--ccccCHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45555665554 667777788888885 1 3333234557787764 88878888888777777777777665
No 7
>cd04920 ACT_AKiii-DAPDC_2 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC). This CD includes the second of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=43.39 E-value=35 Score=24.15 Aligned_cols=58 Identities=16% Similarity=0.198 Sum_probs=40.9
Q ss_pred eeeecCCCccccC-CccccccccCcEEEEEecCCceEEEEEEeCHHHHHHHHHHHHHHH
Q 025691 73 VSAVDSGVEVSIT-EPEDLITVKDAKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNL 130 (249)
Q Consensus 73 ~~~~~sg~~~s~~-~~~~~s~~~~MkVtve~le~~kikLtVeVp~eevq~~~dkalkkl 130 (249)
||.||.|.....- -.+-+..|.+..+.+.....+.+.+++-|+.++.++++...-.++
T Consensus 3 VsvVG~g~~~~~gv~~~~~~~L~~~~i~~i~~~~s~~~is~vv~~~d~~~av~~LH~~f 61 (63)
T cd04920 3 VSLVGRGIRSLLHKLGPALEVFGKKPVHLVSQAANDLNLTFVVDEDQADGLCARLHFQL 61 (63)
T ss_pred EEEECCCcccCccHHHHHHHHHhcCCceEEEEeCCCCeEEEEEeHHHHHHHHHHHHHHH
Confidence 6788888754211 112222346667888889999999999999999988887765544
No 8
>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas
Probab=38.35 E-value=39 Score=24.18 Aligned_cols=58 Identities=14% Similarity=0.199 Sum_probs=39.0
Q ss_pred eeeecCCCccccCCccccccccCc--EEEEEecCCceEEEEEEeCHHHHHHHHHHHHHHH
Q 025691 73 VSAVDSGVEVSITEPEDLITVKDA--KIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNL 130 (249)
Q Consensus 73 ~~~~~sg~~~s~~~~~~~s~~~~M--kVtve~le~~kikLtVeVp~eevq~~~dkalkkl 130 (249)
||.||.|....-.-.+-++.+.+- .+.......++..+.+-|+.++.++++....+.+
T Consensus 5 VsvVG~gm~~~gv~~ki~~~L~~~~I~v~~i~~~~s~~~is~~V~~~~~~~av~~Lh~~f 64 (66)
T cd04915 5 VSVIGRDLSTPGVLARGLAALAEAGIEPIAAHQSMRNVDVQFVVDRDDYDNAIKALHAAL 64 (66)
T ss_pred EEEECCCCCcchHHHHHHHHHHHCCCCEEEEEecCCeeEEEEEEEHHHHHHHHHHHHHHH
Confidence 678888884211112333334443 4444777788999999999999999988877654
No 9
>PF05698 Trigger_C: Bacterial trigger factor protein (TF) C-terminus; InterPro: IPR008880 In the Escherichia coli cytosol, a fraction of the newly synthesised proteins requires the activity of molecular chaperones for folding to the native state. The major chaperones implicated in this folding process are the ribosome-associated Trigger Factor (TF), and the DnaK and GroEL chaperones with their respective co-chaperones. Trigger Factor is an ATP-independent chaperone and displays chaperone and peptidyl-prolyl-cis-trans-isomerase (PPIase) activities in vitro. It is composed of at least three domains, an N-terminal domain which mediates association with the large ribosomal subunit, a central substrate binding and PPIase domain with homology to FKBP proteins, and a C-terminal domain of unknown function. The positioning of TF at the peptide exit channel, together with its ability to interact with nascent chains as short as 57 residues renders TF a prime candidate for being the first chaperone that binds to the nascent polypeptide chains []. This entry represents the C-terminal domain of bacterial trigger factor proteins, which has a multi-helical structure consisting of an irregular array of long and short helices. This domain is structurally similar to the peptide-binding domain of the bacterial porin chaperone SurA.; GO: 0006457 protein folding, 0015031 protein transport; PDB: 1T11_A 3GU0_A 3GTY_X 2NSA_A 1ZXJ_A 1W26_A.
Probab=37.46 E-value=1.4e+02 Score=23.92 Aligned_cols=71 Identities=17% Similarity=0.302 Sum_probs=38.9
Q ss_pred EEEEeCHHHHHHHHHHHHHHHhhhCCCCCCcccC-----CCCCCCCCcHHHHHHHhCHHHHHHHHHHHHHHHH-HHHHHH
Q 025691 110 VRVDLTGDATQRVFDKVLTNLARSAPPIPGFRRE-----KGGKTTKVPRDFLIQILGEERVTKFVVQEIVRST-LTDYTK 183 (249)
Q Consensus 110 LtVeVp~eevq~~~dkalkklaK~akpIPGFRk~-----kGgk~~KVP~~VIek~yG~e~V~~EaieelI~~t-~~eAle 183 (249)
.+|++|...++..++..+.++...++ --|-... .| .-+ ..|-. .+..++.+.+-... +..+.+
T Consensus 37 ~~~~lP~~lv~~~~~~~~~~~~~~~~-~~g~~~e~~~~~~~----~~~-----~~~~~-~~~~~a~~~lk~~lil~~Ia~ 105 (162)
T PF05698_consen 37 SEVELPESLVEEEIERLIEQMEQQLK-QQGMSLEQYLQMSG----KTE-----EEFRE-EFREEAEKRLKQQLILDAIAK 105 (162)
T ss_dssp EEEEE-HHHHHHHHHHHHHHHHHTT----TSSCCCHHHHHC----TCC-----CSHCH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHhh-hhhhHHHHHHHhcC----CCH-----HHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 56799999999999999999999996 4443331 02 111 11222 35555555554444 445566
Q ss_pred HcCCcccC
Q 025691 184 KASLNVKD 191 (249)
Q Consensus 184 ee~L~pvg 191 (249)
.++|.+-.
T Consensus 106 ~e~I~v~~ 113 (162)
T PF05698_consen 106 KEKIEVSD 113 (162)
T ss_dssp HTT----H
T ss_pred HcCCCCCH
Confidence 78887643
No 10
>cd04917 ACT_AKiii-LysC-EC_2 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The second ACT domain (ACT2), this CD, is not involved in the binding of heterotrophic effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=35.18 E-value=69 Score=22.18 Aligned_cols=58 Identities=9% Similarity=0.138 Sum_probs=39.3
Q ss_pred eeeecCCCccc-cCCccccccccCcEEEEEecCCceEEEEEEeCHHHHHHHHHHHHHHH
Q 025691 73 VSAVDSGVEVS-ITEPEDLITVKDAKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNL 130 (249)
Q Consensus 73 ~~~~~sg~~~s-~~~~~~~s~~~~MkVtve~le~~kikLtVeVp~eevq~~~dkalkkl 130 (249)
|+.++.|.... -.-.+-++.+.+..+.+-....+...+.+-|+.++.++++....+.+
T Consensus 4 IsvvG~~~~~~~~v~~~i~~~L~~i~i~~i~~~~s~~~is~~V~~~~~~~a~~~Lh~~f 62 (64)
T cd04917 4 VALIGNDISETAGVEKRIFDALEDINVRMICYGASNHNLCFLVKEEDKDEVVQRLHSRL 62 (64)
T ss_pred EEEECCCccCCcCHHHHHHHHHHhCCeEEEEEecCccEEEEEEeHHHHHHHHHHHHHHH
Confidence 56777776431 11112233345566777778889999999999999988887766654
No 11
>PF06857 ACP: Malonate decarboxylase delta subunit (MdcD); InterPro: IPR023439 This family consists of the acyl carrier protein found in malonate decarboxylase and citrate lyase. This subunit has the same covalently bound prosthetic group, derived from and similar to coenzyme A, as does citrate lyase, although this protein and the acyl carrier protein of citrate lyase do not show significant sequence similarity. Both malonyl and acetyl groups are transferred to the prosthetic group for catalysis.
Probab=33.94 E-value=1.6e+02 Score=23.06 Aligned_cols=44 Identities=14% Similarity=0.215 Sum_probs=31.9
Q ss_pred CcEEEEEecCCceEEEEEEeC-HHHHHHHHHHHHHHHhhhCCCCCC
Q 025691 95 DAKIVVESQDEDKIQVRVDLT-GDATQRVFDKVLTNLARSAPPIPG 139 (249)
Q Consensus 95 ~MkVtve~le~~kikLtVeVp-~eevq~~~dkalkklaK~akpIPG 139 (249)
|+.|.++..++..+.+.++=+ ...+...+++++.+.-+... |++
T Consensus 15 D~~V~v~p~~~~gi~i~l~S~v~~~fg~~i~~vi~~~l~~~~-i~~ 59 (87)
T PF06857_consen 15 DLEVTVEPAESGGIEIELESSVVKQFGDQIRAVIRETLEELG-IED 59 (87)
T ss_pred cEEEEEEeCCCCcEEEEEEchHHhhhHHHHHHHHHHHHHhcC-CCc
Confidence 478999999888888888888 56666666666666666666 554
No 12
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=31.77 E-value=45 Score=23.36 Aligned_cols=58 Identities=7% Similarity=0.098 Sum_probs=37.4
Q ss_pred eeeecCCCcccc-CCccccccccCcEEEEEecCCceEEEEEEeCHHHHHHHHHHHHHHH
Q 025691 73 VSAVDSGVEVSI-TEPEDLITVKDAKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNL 130 (249)
Q Consensus 73 ~~~~~sg~~~s~-~~~~~~s~~~~MkVtve~le~~kikLtVeVp~eevq~~~dkalkkl 130 (249)
|+.+++|..... .-.+-++.+.+..+.+.....++..+.+-|+.++.++++....+.+
T Consensus 4 isvvG~~~~~~~gi~~~if~aL~~~~I~v~~~~~Se~~is~~v~~~~~~~av~~Lh~~f 62 (64)
T cd04937 4 VTIIGSRIRGVPGVMAKIVGALSKEGIEILQTADSHTTISCLVSEDDVKEAVNALHEAF 62 (64)
T ss_pred EEEECCCccCCcCHHHHHHHHHHHCCCCEEEEEcCccEEEEEEcHHHHHHHHHHHHHHh
Confidence 567777774421 1112333345555555555558999999999999988887766654
No 13
>KOG3018 consensus Malonyl-CoA decarboxylase [Carbohydrate transport and metabolism]
Probab=31.50 E-value=28 Score=33.34 Aligned_cols=21 Identities=38% Similarity=0.809 Sum_probs=15.5
Q ss_pred HHHHHHHHHhhhC---------CCCCCccc
Q 025691 122 VFDKVLTNLARSA---------PPIPGFRR 142 (249)
Q Consensus 122 ~~dkalkklaK~a---------kpIPGFRk 142 (249)
.+.++++++.|+. .||||||+
T Consensus 183 LIKrV~t~lqkd~Phv~tfstLSPIPGF~~ 212 (362)
T KOG3018|consen 183 LIKRVITLLQKDMPHVSTFSTLSPIPGFMQ 212 (362)
T ss_pred HHHHHHHHHHhcCCccccccccCCCccHHH
Confidence 4566777777754 58999986
No 14
>COG0199 RpsN Ribosomal protein S14 [Translation, ribosomal structure and biogenesis]
Probab=30.79 E-value=31 Score=25.62 Aligned_cols=18 Identities=28% Similarity=0.576 Sum_probs=15.5
Q ss_pred HHHHHHHhhhCCCCCCccc
Q 025691 124 DKVLTNLARSAPPIPGFRR 142 (249)
Q Consensus 124 dkalkklaK~akpIPGFRk 142 (249)
-..++++|.+=+ ||||+|
T Consensus 41 R~cfRE~A~~g~-ipGv~K 58 (61)
T COG0199 41 RICFRELAHKGE-IPGVKK 58 (61)
T ss_pred HHHHHHHhhccC-CCCeEe
Confidence 356889999999 999998
No 15
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=30.69 E-value=42 Score=24.40 Aligned_cols=33 Identities=15% Similarity=0.264 Sum_probs=24.7
Q ss_pred HHHHHHHHHhhhCCCCCCcccCCCCCCCCCcHHHHHHHhCH
Q 025691 122 VFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGE 162 (249)
Q Consensus 122 ~~dkalkklaK~akpIPGFRk~kGgk~~KVP~~VIek~yG~ 162 (249)
.+++-+..+.++.. -|||.. |||..||++.-.+
T Consensus 15 kl~~~i~~~~~kL~-n~~F~~-------kAP~eVve~er~k 47 (66)
T PF10458_consen 15 KLEKEIERLEKKLS-NENFVE-------KAPEEVVEKEREK 47 (66)
T ss_dssp HHHHHHHHHHHHHC-STTHHH-------HS-CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-Cccccc-------cCCHHHHHHHHHH
Confidence 34556667777788 899999 8999999986643
No 16
>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel
Probab=24.93 E-value=67 Score=21.93 Aligned_cols=41 Identities=15% Similarity=0.208 Sum_probs=29.7
Q ss_pred cccccCcEEEEEecCCceEEEEEEeCHHHHHHHHHHHHHHH
Q 025691 90 LITVKDAKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNL 130 (249)
Q Consensus 90 ~s~~~~MkVtve~le~~kikLtVeVp~eevq~~~dkalkkl 130 (249)
|+.+++..+.+.-.......+.+.++....++.+++.+++|
T Consensus 21 f~~l~~~~i~v~~i~t~~~~is~~v~~~~~~~~~~~l~~~l 61 (62)
T cd04890 21 FEILEKHGISVDLIPTSENSVTLYLDDSLLPKKLKRLLAEL 61 (62)
T ss_pred HHHHHHcCCeEEEEecCCCEEEEEEehhhhhHHHHHHHHhh
Confidence 34555556666666556688999999988888888777765
No 17
>KOG2801 consensus Probable Rab-GAPs [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.04 E-value=2.1e+02 Score=27.97 Aligned_cols=39 Identities=15% Similarity=0.210 Sum_probs=30.4
Q ss_pred cHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHcCCcccC
Q 025691 152 PRDFLIQILGEERVTKFVVQEIVRSTLTDYTKKASLNVKD 191 (249)
Q Consensus 152 P~~VIek~yG~e~V~~EaieelI~~t~~eAleee~L~pvg 191 (249)
|.+++++.|.- ++...---.+++.+-.+|+++.+|.+..
T Consensus 282 pekllekafai-rlfsrkeiqllqmanekalkqkgitvkq 320 (559)
T KOG2801|consen 282 PEKLLEKAFAI-RLFSRKEIQLLQMANEKALKQKGITVKQ 320 (559)
T ss_pred HHHHHHHHHHH-HHhhHHHHHHHHHhhHHHHHhcCceeee
Confidence 67888888854 4555555567888999999999998865
No 18
>PF11000 DUF2840: Protein of unknown function (DUF2840); InterPro: IPR021263 This bacterial family of proteins have no known function.
Probab=23.94 E-value=84 Score=27.24 Aligned_cols=43 Identities=30% Similarity=0.449 Sum_probs=32.3
Q ss_pred CCCcccCCCCCCCCCcHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCCce
Q 025691 137 IPGFRREKGGKTTKVPRDFLIQILGEERVTKFVVQEIVRSTLTDYTKKASLNVKDKKVT 195 (249)
Q Consensus 137 IPGFRk~kGgk~~KVP~~VIek~yG~e~V~~EaieelI~~t~~eAleee~L~pvg~~P~ 195 (249)
|||=|| || .+|.+.-|-.+|. .+++.| +|++..||.|..-.|.
T Consensus 75 vP~V~P--G~-------eiLLr~~Gw~kV~-~VL~~I------DaiEalGidp~dvaPd 117 (149)
T PF11000_consen 75 VPFVRP--GG-------EILLRIEGWPKVE-RVLQAI------DAIEALGIDPADVAPD 117 (149)
T ss_pred CCCcCc--ch-------hhhccccCcHHHH-HHHHHH------hHHHHcCCChhhcChH
Confidence 999999 95 8999999975443 333332 8899999999774454
No 19
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=23.76 E-value=58 Score=24.89 Aligned_cols=46 Identities=13% Similarity=0.146 Sum_probs=40.0
Q ss_pred cccccCcEEEEEecCCceEEEEEEeCHHHHHH-HHHHHHHHHhhhCC
Q 025691 90 LITVKDAKIVVESQDEDKIQVRVDLTGDATQR-VFDKVLTNLARSAP 135 (249)
Q Consensus 90 ~s~~~~MkVtve~le~~kikLtVeVp~eevq~-~~dkalkklaK~ak 135 (249)
.+.+++-.+.+|..+...-.++|.+..++++. ..++++++|++.++
T Consensus 22 L~I~E~~~is~Eh~PSGID~~Siii~~~~~~~~~~~~i~~~i~~~~~ 68 (76)
T cd04911 22 LSILEDNGISYEHMPSGIDDISIIIRDNQLTDEKEQKILAEIKEELH 68 (76)
T ss_pred HHHHHHcCCCEeeecCCCccEEEEEEccccchhhHHHHHHHHHHhcC
Confidence 34556667789999999999999999999999 99999999999887
No 20
>PRK13253 citrate lyase subunit gamma; Provisional
Probab=22.54 E-value=3.5e+02 Score=21.45 Aligned_cols=45 Identities=11% Similarity=0.163 Sum_probs=28.7
Q ss_pred CcEEEEEecCCceEEEEEEeCHH-HHHHHHHHHHHHHhhhCCCCCCc
Q 025691 95 DAKIVVESQDEDKIQVRVDLTGD-ATQRVFDKVLTNLARSAPPIPGF 140 (249)
Q Consensus 95 ~MkVtve~le~~kikLtVeVp~e-evq~~~dkalkklaK~akpIPGF 140 (249)
|+.|.++..++..+.+.|+=+.+ .+...+++++.+.-.... +++=
T Consensus 16 Dl~V~veP~~~~~i~i~i~SsV~~~Fg~~i~~vv~~~l~~~~-v~~~ 61 (92)
T PRK13253 16 DVMIRIAPADTQGIDIQLESSVEKQFGDQIRAVILETLAKLG-VENA 61 (92)
T ss_pred CEEEEEEeCCCCcEEEEEEeeHHhhhHHHHHHHHHHHHHhcC-CCce
Confidence 47888998755667777776666 555555555555555555 4443
No 21
>PF01077 NIR_SIR: Nitrite and sulphite reductase 4Fe-4S domain; InterPro: IPR006067 Sulphite reductases (SiRs) and related nitrite reductases (NiRs) catalyse the six-electron reduction reactions of sulphite to sulphide, and nitrite to ammonia, respectively. The Escherichia coli SiR enzyme is a complex composed of two proteins, a flavoprotein alpha-component (SiR-FP) and a hemoprotein beta-component (SiR-HP) (IPR005117 from INTERPRO), and has an alpha(8)beta(4) quaternary structure []. SiR-FP contains both FAD and FMN, while SiR-HP contains a Fe(4)S(4) cluster coupled to a siroheme through a cysteine bridge. Electrons are transferred from NADPH to FAD, and on to FMN in SiR-FP, from which they are transferred to the metal centre of SiR-HP, where they reduce the siroheme-bound sulphite. SiR-HP has a two-fold symmetry, which generates a distinctive three-domain alpha/beta fold that controls assembly and reactivity []. In the E. coli SiR-HP enzyme (1.8.1.2 from EC), the iron is bound to cysteine residues at positions 433, 439, 478 and 482, the latter also forming the siroheme ligand.; GO: 0016491 oxidoreductase activity, 0020037 heme binding, 0051536 iron-sulfur cluster binding, 0055114 oxidation-reduction process; PDB: 1ZJ8_B 1ZJ9_A 2AKJ_A 3VKT_A 3VKR_A 3VKS_A 3B0M_A 3B0N_A 3VKP_A 3B0J_A ....
Probab=20.87 E-value=1.7e+02 Score=23.95 Aligned_cols=47 Identities=21% Similarity=0.170 Sum_probs=36.3
Q ss_pred EEeCHHHHHHHHHHHHHHHh--hhCCCCCCcccCCCCCCCCCcHHHHHHHhCHHHHHHHHHH
Q 025691 112 VDLTGDATQRVFDKVLTNLA--RSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVTKFVVQ 171 (249)
Q Consensus 112 VeVp~eevq~~~dkalkkla--K~akpIPGFRk~kGgk~~KVP~~VIek~yG~e~V~~Eaie 171 (249)
..++.+++-..+++++.-+. +..+ . +....-+..++|.+.+.+++.+
T Consensus 103 ~~~~~ee~~~~i~~il~~y~~~~~~~---------~----~er~~~~i~r~G~e~~~~~v~~ 151 (157)
T PF01077_consen 103 GFVPEEEVLEVIEAILEYYRGNREAR---------K----KERFKDFIERLGFEKFREEVEE 151 (157)
T ss_dssp EEEEGGGHHHHHHHHHHHHHS-HSSG---------T----T-SHHHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHhccCC---------C----CCCHHHHHHHHCHHHHHHHHHH
Confidence 45788889999999999998 4444 5 6788888889998877776643
No 22
>COG2036 HHT1 Histones H3 and H4 [Chromatin structure and dynamics]
Probab=20.77 E-value=2.2e+02 Score=22.58 Aligned_cols=32 Identities=28% Similarity=0.553 Sum_probs=21.3
Q ss_pred CCcHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Q 025691 150 KVPRDFLIQILGEERVTKFVVQEIVRSTLTDYT 182 (249)
Q Consensus 150 KVP~~VIek~yG~e~V~~EaieelI~~t~~eAl 182 (249)
++|..=|.+..|.++|...|++.+ ++.+.+++
T Consensus 22 ~apv~Ri~r~~~~~Rvs~~A~~~l-~~~~e~~~ 53 (91)
T COG2036 22 KAPVRRILRKAGAERVSSSAIEEL-QEALEEYL 53 (91)
T ss_pred chHHHHHHHHHhHHHhhHHHHHHH-HHHHHHHH
Confidence 678888888888888877766554 33344433
No 23
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=20.12 E-value=1.4e+02 Score=20.11 Aligned_cols=58 Identities=10% Similarity=0.176 Sum_probs=32.5
Q ss_pred eeeecCCCccccC-CccccccccCcEEEE--EecCCceEEEEEEeCHHHHHHHHHHHHHHH
Q 025691 73 VSAVDSGVEVSIT-EPEDLITVKDAKIVV--ESQDEDKIQVRVDLTGDATQRVFDKVLTNL 130 (249)
Q Consensus 73 ~~~~~sg~~~s~~-~~~~~s~~~~MkVtv--e~le~~kikLtVeVp~eevq~~~dkalkkl 130 (249)
|+.+++|+..... -.+=++.+.+..+.+ -....+...+.+.|+.++..++.....+.+
T Consensus 4 isvvg~~~~~~~~~~~~i~~~l~~~~I~v~~i~~~~s~~~is~~v~~~~~~~~~~~lh~~~ 64 (66)
T cd04922 4 LALVGDGMAGTPGVAATFFSALAKANVNIRAIAQGSSERNISAVIDEDDATKALRAVHERF 64 (66)
T ss_pred EEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecCcccEEEEEEeHHHHHHHHHHHHHHH
Confidence 6777887765211 011122334433333 332335689999999988887766555443
Done!