Query 025691
Match_columns 249
No_of_seqs 147 out of 1120
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 15:31:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025691.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025691hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1p9y_A Trigger factor, TF; alp 100.0 2.5E-29 8.5E-34 202.5 15.2 114 95-223 3-116 (121)
2 2d3o_1 Trigger factor, TF; rib 100.0 1E-29 3.5E-34 202.1 6.8 112 96-223 1-112 (112)
3 2nsc_A Trigger factor, TF; cha 99.9 2E-28 6.8E-33 193.9 8.0 109 96-223 1-109 (109)
4 1t11_A Trigger factor, TF; hel 99.9 2.6E-25 8.8E-30 209.1 16.8 131 95-240 3-139 (392)
5 1w26_A Trigger factor, TF; cha 99.9 4.9E-25 1.7E-29 209.3 12.2 129 96-239 1-135 (432)
6 3gty_X Trigger factor, TF; cha 99.8 8.7E-21 3E-25 180.3 7.0 109 96-223 1-109 (433)
7 4a20_A Ubiquitin-like protein 38.5 33 0.0011 25.7 4.0 41 87-127 11-51 (98)
8 3kg0_A Snoab; polyketide, anth 22.7 51 0.0017 25.6 2.7 36 105-142 23-58 (128)
9 2kl8_A OR15; structural genomi 21.6 1.4E+02 0.0046 21.9 4.5 37 100-137 34-70 (85)
10 4dbg_A Ranbp-type and C3HC4-ty 21.1 95 0.0032 23.8 3.9 33 95-127 24-56 (105)
11 1wx7_A Ubiquilin 3; ubiquitin- 20.4 1.3E+02 0.0045 21.9 4.5 43 75-126 3-45 (106)
No 1
>1p9y_A Trigger factor, TF; alpha-beta protein, isomerase; 2.15A {Escherichia coli} SCOP: d.241.2.1 PDB: 1oms_A*
Probab=99.96 E-value=2.5e-29 Score=202.54 Aligned_cols=114 Identities=23% Similarity=0.379 Sum_probs=108.3
Q ss_pred CcEEEEEecCCceEEEEEEeCHHHHHHHHHHHHHHHhhhCCCCCCcccCCCCCCCCCcHHHHHHHhCHHHHHHHHHHHHH
Q 025691 95 DAKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVTKFVVQEIV 174 (249)
Q Consensus 95 ~MkVtve~le~~kikLtVeVp~eevq~~~dkalkklaK~akpIPGFRk~kGgk~~KVP~~VIek~yG~e~V~~EaieelI 174 (249)
.|+++++++++++++|+|+||+++++++++++|++++++++ |||||| | |||++||+++||+ +|++++++++|
T Consensus 3 ~M~v~~e~~~~~~~~l~v~v~~~~~~~~~~~~~~~~~k~v~-ipGFRk--G----KvP~~vi~k~yG~-~v~~ea~~~~i 74 (121)
T 1p9y_A 3 HMQVSVETTQGLGRRVTITIAADSIETAVKSELVNVAKKVR-IDGLRK--G----KVPMNIVAQRYGA-SVRQDVLGDLM 74 (121)
T ss_dssp -CEEEEEECSTTEEEEEEEECHHHHHHHHHHHHHHHHTTCC-CTTSCT--T----CSCHHHHHHHHHH-HHHHHHHHHHH
T ss_pred cceEEEEECCCcEEEEEEEECHHHHHHHHHHHHHHHHhhCc-cCCcCC--C----CCCHHHHHHHHHH-HHHHHHHHHHH
Confidence 39999999999999999999999999999999999999999 999999 9 9999999999997 59999999999
Q ss_pred HHHHHHHHHHcCCcccCCCceeehhhhhhhhcccCCCcEEEEEEEEeec
Q 025691 175 RSTLTDYTKKASLNVKDKKVTTTQKAEELRKSFYPGNEFGFSAVLELEK 223 (249)
Q Consensus 175 ~~t~~eAleee~L~pvg~~P~i~~~~eel~~~f~~g~~fsFtv~veV~~ 223 (249)
+++|.+|+++++|+|++ +|.++. ..+++|++|+|+++|+|++
T Consensus 75 ~~~~~~ai~e~~l~~~~-~P~i~~------~~~~~~~~~~f~~~~ev~P 116 (121)
T 1p9y_A 75 SRNFIDAIIKEKINPAG-APTYVP------GEYKLGEDFTYSVEFEVYP 116 (121)
T ss_dssp HHHHHHHHHHTTCCCEE-EEEEEE------CCCCSSSCEEEEEEEECCC
T ss_pred HHHHHHHHHHcCCCCCC-CCcccc------cccCCCCCEEEEEEEEEcC
Confidence 99999999999999999 999862 4578899999999999984
No 2
>2d3o_1 Trigger factor, TF; ribosome, nascent chain, protein folding, SRP; 3.35A {Deinococcus radiodurans} PDB: 2aar_7
Probab=99.96 E-value=1e-29 Score=202.12 Aligned_cols=112 Identities=24% Similarity=0.445 Sum_probs=95.7
Q ss_pred cEEEEEecCCceEEEEEEeCHHHHHHHHHHHHHHHhhhCCCCCCcccCCCCCCCCCcHHHHHHHhCHHHHHHHHHHHHHH
Q 025691 96 AKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVTKFVVQEIVR 175 (249)
Q Consensus 96 MkVtve~le~~kikLtVeVp~eevq~~~dkalkklaK~akpIPGFRk~kGgk~~KVP~~VIek~yG~e~V~~EaieelI~ 175 (249)
|++++++ ++++++|+|+||+++++++++++|++++++++ |||||| | |||++||+++||++.|++++++++|+
T Consensus 1 M~v~~e~-~~~~~~l~v~v~~~~~~~~~~~~~~~~~k~~~-ipGFRk--G----KvP~~vi~k~yG~~~v~~ea~~~~i~ 72 (112)
T 2d3o_1 1 MAELISK-EGNKVEFKVSVPAAEVNRAYDQVWAGLARDVR-VPGFRP--G----KAPRKVIENRVGKGYVESQVRDRLLE 72 (112)
T ss_dssp ----------CCEEEEECCCGGGTHHHHHHHHHHHHTTSC-BTTBCT--T----CCCSTTHHHHTTTTSSHHHHHHHHHH
T ss_pred CceEEEc-CCcEEEEEEEECHHHHHHHHHHHHHHHHhhCC-CCCcCC--C----CCCHHHHHHHhCHHHHHHHHHHHHHH
Confidence 8899999 99999999999999999999999999999999 999999 9 99999999999955799999999999
Q ss_pred HHHHHHHHHcCCcccCCCceeehhhhhhhhcccCCCcEEEEEEEEeec
Q 025691 176 STLTDYTKKASLNVKDKKVTTTQKAEELRKSFYPGNEFGFSAVLELEK 223 (249)
Q Consensus 176 ~t~~eAleee~L~pvg~~P~i~~~~eel~~~f~~g~~fsFtv~veV~~ 223 (249)
++|.+|+++++|+|++ +|.++. . +++|++|+|+++|+|++
T Consensus 73 ~~~~~ai~e~~l~~~~-~P~i~~------~-~~~~~~~~f~~~~ev~P 112 (112)
T 2d3o_1 73 THYSQGLRELGLNLVD-ATVDPQ------D-VQSGQAFEFTVKGETYP 112 (112)
T ss_dssp HHHHHHHHHSCCCCCC-EECCCC------C-CCSSSCCCEEEEEC---
T ss_pred HHHHHHHHHcCCCCCC-CCcccc------c-ccCCCCEEEEEEEEecC
Confidence 9999999999999999 999862 4 78899999999999874
No 3
>2nsc_A Trigger factor, TF; chaperone; 2.20A {Thermotoga maritima} PDB: 2nsb_A
Probab=99.95 E-value=2e-28 Score=193.88 Aligned_cols=109 Identities=18% Similarity=0.325 Sum_probs=103.2
Q ss_pred cEEEEEecCCceEEEEEEeCHHHHHHHHHHHHHHHhhhCCCCCCcccCCCCCCCCCcHHHHHHHhCHHHHHHHHHHHHHH
Q 025691 96 AKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVTKFVVQEIVR 175 (249)
Q Consensus 96 MkVtve~le~~kikLtVeVp~eevq~~~dkalkklaK~akpIPGFRk~kGgk~~KVP~~VIek~yG~e~V~~EaieelI~ 175 (249)
|+++++++++++++|+|+||+++++++++++|++++++++ |||||| | |||+++|+++||+ .|++++++++|+
T Consensus 1 M~v~~e~~~~~~~~l~v~v~~~~~~~~~~~~~~~~~k~~~-ipGFRk--G----KvP~~vi~k~yG~-~v~~ea~~~~i~ 72 (109)
T 2nsc_A 1 MEVKELERDKNRVVLEYVFGAEEIAQAEDKAVRYLNQRVE-IPGFRK--G----RIPKNVLKMKLGE-EFQEYTLDFLMD 72 (109)
T ss_dssp CEEEEEEEETTEEEEEEECCHHHHHHHHHHHHHHHHTTCC-CTTSCT--T----CCCHHHHHHHHGG-GHHHHHHHHHHT
T ss_pred CceEEEEcCCCEEEEEEEECHHHHHHHHHHHHHHHhccCC-CCCcCC--C----CCCHHHHHHHHhH-HHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999 999999 9 9999999999997 699999999999
Q ss_pred HHHHHHHHHcCCcccCCCceeehhhhhhhhcccCCCcEEEEEEEEeec
Q 025691 176 STLTDYTKKASLNVKDKKVTTTQKAEELRKSFYPGNEFGFSAVLELEK 223 (249)
Q Consensus 176 ~t~~eAleee~L~pvg~~P~i~~~~eel~~~f~~g~~fsFtv~veV~~ 223 (249)
+ |.+|+++++| ++ +|.++. ..++ |++|+|+++|+|++
T Consensus 73 ~-~~~ai~e~~l--~~-~P~i~~------~~~~-~~~~~f~~~~ev~P 109 (109)
T 2nsc_A 73 L-IPDTLKDRKL--IL-SPIVTE------RELK-DVTARVVVEVHEEP 109 (109)
T ss_dssp T-HHHHTTTSCC--SS-CCCCCC------CCCC-CCCCCCCCCCCCCC
T ss_pred H-HHHHHHHcCc--CC-CCcccc------cccc-CCCEEEEEEEEecC
Confidence 9 9999999999 99 999862 4577 89999999999874
No 4
>1t11_A Trigger factor, TF; helix-turn-helix, four-helix-bundle, ppiase, chaperone; 2.50A {Vibrio cholerae} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 1l1p_A
Probab=99.93 E-value=2.6e-25 Score=209.08 Aligned_cols=131 Identities=20% Similarity=0.334 Sum_probs=117.3
Q ss_pred CcEEEEEecCCceEEEEEEeCHHHHHHHHHHHHHHHhhhCCCCCCcccCCCCCCCCCcHHHHHHHhCHHHHHHHHHHHHH
Q 025691 95 DAKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVTKFVVQEIV 174 (249)
Q Consensus 95 ~MkVtve~le~~kikLtVeVp~eevq~~~dkalkklaK~akpIPGFRk~kGgk~~KVP~~VIek~yG~e~V~~EaieelI 174 (249)
.|+++++++++++++|+|+||+++++++++++|++++++++ |||||| | |||++||+++||+ .|++++++++|
T Consensus 3 ~M~v~~e~~~~~~~~l~v~v~~~~~~~~~~~~~~~~~k~~~-ipGFRk--G----KvP~~~i~k~yG~-~v~~ea~~~~~ 74 (392)
T 1t11_A 3 HMQVTVETLEGLQRRLNITVPAANIEDAVAAELRNIAKNRR-FDGFRK--G----KVPMKMVAKMYGK-AVRQDVLGEVM 74 (392)
T ss_dssp CCEEEEEECSTTEEEEEEEECHHHHHHHHHHHHHHHHTTCC-CTTSCS--S----CCCHHHHHHHHHH-HHHHHHHHHHH
T ss_pred cceEEEEEcCCcEEEEEEEEcHHHHHHHHHHHHHHHhccCC-CCCCCC--C----CCCHHHHHHHHhH-HHHHHHHHHHH
Confidence 49999999999999999999999999999999999999999 999999 9 9999999999996 69999999999
Q ss_pred HHHHHHHHHHcCCcccCCCceeehhhhhhhhcccCCCcEEEEEEEEeec------CCcccccccccCCCCCc
Q 025691 175 RSTLTDYTKKASLNVKDKKVTTTQKAEELRKSFYPGNEFGFSAVLELEK------SEVEESETETSSSSSSD 240 (249)
Q Consensus 175 ~~t~~eAleee~L~pvg~~P~i~~~~eel~~~f~~g~~fsFtv~veV~~------~E~~e~~~~~~~~~~~~ 240 (249)
+.+|.+|+++++|+|++ +|.++. ..+++|++|+|+++|+|+| +.+.+.+....+.++.|
T Consensus 75 ~~~~~~ai~e~~l~~~~-~P~i~~------~~~~~~~~~~f~~~~ev~Pev~l~~y~~l~v~~~~~~Vtde~ 139 (392)
T 1t11_A 75 QRHFIEAIVKEKINPAG-APTFAP------VEIGEGKDLVFTATFEVYPEVELKGLENIAVEKPAAEVTDAD 139 (392)
T ss_dssp HHHHHHHHHHTTCCBSS-CCEEEE------EECCTTSCEEEEEEEEBCCCCCCTTCTTCEEESSCC---CTH
T ss_pred HHHHHHHHHHcCCCcCC-CCCccc------cccCCCCCEEEEEEecCCCceecCCCCceEEEeCCCCcCHHH
Confidence 99999999999999999 999862 3578899999999999983 46666666666666654
No 5
>1w26_A Trigger factor, TF; chaperone, protein folding, ribosome associated protein, nascent chain, cell division, isomerase; 2.7A {Escherichia coli} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 2vrh_A 1w2b_5
Probab=99.92 E-value=4.9e-25 Score=209.31 Aligned_cols=129 Identities=23% Similarity=0.361 Sum_probs=117.0
Q ss_pred cEEEEEecCCceEEEEEEeCHHHHHHHHHHHHHHHhhhCCCCCCcccCCCCCCCCCcHHHHHHHhCHHHHHHHHHHHHHH
Q 025691 96 AKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVTKFVVQEIVR 175 (249)
Q Consensus 96 MkVtve~le~~kikLtVeVp~eevq~~~dkalkklaK~akpIPGFRk~kGgk~~KVP~~VIek~yG~e~V~~EaieelI~ 175 (249)
|+++++++++++++|+|+||+++++++++++|++++++++ |||||| | |||++||+++||+ .|++++++++|+
T Consensus 1 M~v~~e~~~~~~~~l~v~v~~~~~~~~~~~~~~~~~k~~~-ipGFRk--G----KvP~~vi~~~yG~-~v~~ea~~~~~~ 72 (432)
T 1w26_A 1 MQVSVETTQGLGRRVTITIAADSIETAVKSELVNVAKKVR-IDGFRK--G----KVPMNIVAQRYGA-SVRQDVLGDLMS 72 (432)
T ss_dssp CEEECCBCSTTEEEEEEEECHHHHHHHHHHHHHHHHHHTT-CGGGCC--S----SSCHHHHHHHHCT-TTHHHHHHHHHH
T ss_pred CceEEEEcCCcEEEEEEEEcHHHHHHHHHHHHHHHhhhCC-CCCcCC--C----CCCHHHHHHHHhH-HHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999 999999 9 9999999999997 699999999999
Q ss_pred HHHHHHHHHcCCcccCCCceeehhhhhhhhcccCCCcEEEEEEEEeec------CCcccccccccCCCCC
Q 025691 176 STLTDYTKKASLNVKDKKVTTTQKAEELRKSFYPGNEFGFSAVLELEK------SEVEESETETSSSSSS 239 (249)
Q Consensus 176 ~t~~eAleee~L~pvg~~P~i~~~~eel~~~f~~g~~fsFtv~veV~~------~E~~e~~~~~~~~~~~ 239 (249)
.+|.+|+++++|+|++ +|.++. ..+++|++|+|+++|+|+| +.+.+.+....+.++.
T Consensus 73 ~~~~~ai~e~~l~~~~-~P~i~~------~~~~~~~~~~f~~~~~v~Pev~l~~y~~l~v~~~~~eVtde 135 (432)
T 1w26_A 73 RNFIDAIIKEKINPAG-APTYVP------GEYKLGEDFTYSVEFEVYPEVELQGLEAIEVEKPIVEVTDA 135 (432)
T ss_dssp HHHHHHHHHSCCCEEE-EEEEEE------CCCCTTSCEEEEEEEEECCCCCCCCTTTCBCCEEECCCCHH
T ss_pred HHHHHHHHhcCCCCCC-CCCccc------cccCCCCcEEEEEEeccCCCeecCCCCceEEEecCCCcCHH
Confidence 9999999999999999 999862 3578899999999999984 4566666666665554
No 6
>3gty_X Trigger factor, TF; chaperone-client complex, cell cycle, cell division, chapero isomerase, rotamase, ribonucleoprotein, binding; 3.40A {Thermotoga maritima} PDB: 3gu0_A
Probab=99.82 E-value=8.7e-21 Score=180.34 Aligned_cols=109 Identities=17% Similarity=0.303 Sum_probs=95.8
Q ss_pred cEEEEEecCCceEEEEEEeCHHHHHHHHHHHHHHHhhhCCCCCCcccCCCCCCCCCcHHHHHHHhCHHHHHHHHHHHHHH
Q 025691 96 AKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVTKFVVQEIVR 175 (249)
Q Consensus 96 MkVtve~le~~kikLtVeVp~eevq~~~dkalkklaK~akpIPGFRk~kGgk~~KVP~~VIek~yG~e~V~~EaieelI~ 175 (249)
|++++++.+++.+.|+|+||+++++++++++|++++++++ |||||| | |||++||+++||+ .|+.++++.+++
T Consensus 1 M~v~~~~~e~~~~~l~i~v~~~~~~~~~~~~~k~~~k~v~-ipGFRk--G----KvP~~vi~k~yG~-~v~~ev~~~l~~ 72 (433)
T 3gty_X 1 MEVKELERDKNRVVLEYVFGAEEIAQAEDKAVRYLNQRVE-IPGFRK--G----RIPKNVLKMKLGE-EFQEYTLDFLMD 72 (433)
T ss_dssp CEEEEEEEETTEEEEEEECCTTHHHHHHHHHHHHHHTSCC-CCC--C--C----CCCSHHHHTTSTT-HHHHHHHHHHHT
T ss_pred CceEEEEcCCCEEEEEEEEcHHHHHHHHHHHHHHHHHhCC-CCCCCC--C----CCcHHHHHHHhhH-HHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999 999999 9 9999999999998 699999999999
Q ss_pred HHHHHHHHHcCCcccCCCceeehhhhhhhhcccCCCcEEEEEEEEeec
Q 025691 176 STLTDYTKKASLNVKDKKVTTTQKAEELRKSFYPGNEFGFSAVLELEK 223 (249)
Q Consensus 176 ~t~~eAleee~L~pvg~~P~i~~~~eel~~~f~~g~~fsFtv~veV~~ 223 (249)
..+ +++.++ +|++ +|.++. ..++ |++|+|+++|+|+|
T Consensus 73 ~~~-~~~~~e--~~~~-~P~i~~------~~~~-~~~~~f~~~vev~P 109 (433)
T 3gty_X 73 LIP-DTLKDR--KLIL-SPIVTE------RELK-DVTARVVVEVHEEP 109 (433)
T ss_dssp TST-TTSSSS--CBSS-CCEEEE------EEEC-SSCEEEEEEEEBCC
T ss_pred HHH-HHHHhc--CCCC-CCCcCc------cccc-CCCEEEEEEEEecC
Confidence 987 455555 7899 999862 2343 66899999999973
No 7
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=38.51 E-value=33 Score=25.72 Aligned_cols=41 Identities=12% Similarity=0.195 Sum_probs=27.3
Q ss_pred ccccccccCcEEEEEecCCceEEEEEEeCHHHHHHHHHHHH
Q 025691 87 PEDLITVKDAKIVVESQDEDKIQVRVDLTGDATQRVFDKVL 127 (249)
Q Consensus 87 ~~~~s~~~~MkVtve~le~~kikLtVeVp~eevq~~~dkal 127 (249)
.+|.+....|+|+++.+.+....+.|+++..++=..+.+.+
T Consensus 11 ~~~~~~~~~m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I 51 (98)
T 4a20_A 11 DDDKMDNAAVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHL 51 (98)
T ss_dssp -------CCEEEEEEECSSSCEEEEEEECTTCBHHHHHHHH
T ss_pred CcccCCCCCEEEEEEcCCCCEEEEEEecCCCChHHHHHHHH
Confidence 45555668899999999999888988888776655555554
No 8
>3kg0_A Snoab; polyketide, anthracycline, oxygenase, cofactor-independent, oxidoreductase; 1.70A {Streptomyces nogalater} PDB: 3kg1_A 3kng_A
Probab=22.69 E-value=51 Score=25.57 Aligned_cols=36 Identities=28% Similarity=0.380 Sum_probs=28.2
Q ss_pred CceEEEEEEeCHHHHHHHHHHHHHHHhhhCCCCCCccc
Q 025691 105 EDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRR 142 (249)
Q Consensus 105 ~~kikLtVeVp~eevq~~~dkalkklaK~akpIPGFRk 142 (249)
-..+..+++|.++ +..|.+++.++...++-.|||+-
T Consensus 23 mi~via~~~V~pg--~~~f~~~~~~~~~~~~~~pGfi~ 58 (128)
T 3kg0_A 23 EVTFVNRFTVHGA--PAEFESVFARTAAFFARQPGFVR 58 (128)
T ss_dssp CEEEEEEEEECSC--HHHHHHHHHHHHHHHHTSTTEEE
T ss_pred cEEEEEEEEeCCC--HHHHHHHHHHHHHHHhcCCCccE
Confidence 3455667888887 88999999998887655999975
No 9
>2kl8_A OR15; structural genomics, PSI-2, protein structure initiative, de novo protein, ferrodoxin fold; NMR {Artificial gene}
Probab=21.57 E-value=1.4e+02 Score=21.93 Aligned_cols=37 Identities=16% Similarity=0.273 Sum_probs=33.1
Q ss_pred EEecCCceEEEEEEeCHHHHHHHHHHHHHHHhhhCCCC
Q 025691 100 VESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPI 137 (249)
Q Consensus 100 ve~le~~kikLtVeVp~eevq~~~dkalkklaK~akpI 137 (249)
.-.++++..+++|+=-++.+.+.+.+....++|..+ |
T Consensus 34 tytldgndleiritgvpeqvrkelakeaerlakefn-i 70 (85)
T 2kl8_A 34 TYTLDGNDLEIRITGVPEQVRKELAKEAERLAKEFN-I 70 (85)
T ss_dssp EEEECSSCEEEEEESCCHHHHHHHHHHHHHHHHHTC-C
T ss_pred EEEecCCeeEEEEecChHHHHHHHHHHHHHHHHhcC-e
Confidence 356899999999999999999999999999999887 5
No 10
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=21.08 E-value=95 Score=23.84 Aligned_cols=33 Identities=12% Similarity=0.204 Sum_probs=24.9
Q ss_pred CcEEEEEecCCceEEEEEEeCHHHHHHHHHHHH
Q 025691 95 DAKIVVESQDEDKIQVRVDLTGDATQRVFDKVL 127 (249)
Q Consensus 95 ~MkVtve~le~~kikLtVeVp~eevq~~~dkal 127 (249)
.|+|+++........++++|.+..+=..+.+.+
T Consensus 24 ~l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I 56 (105)
T 4dbg_A 24 RLWVSVEDAQMHTVTIWLTVRPDMTVASLKDMV 56 (105)
T ss_dssp EEEEEEEESSSCCEEEEEEECTTCBHHHHHHHH
T ss_pred EEEEEEEccCCCCceEEEEECCcChHHHHHHHH
Confidence 499999999998899999998766544444333
No 11
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=20.43 E-value=1.3e+02 Score=21.95 Aligned_cols=43 Identities=19% Similarity=0.309 Sum_probs=25.3
Q ss_pred eecCCCccccCCccccccccCcEEEEEecCCceEEEEEEeCHHHHHHHHHHH
Q 025691 75 AVDSGVEVSITEPEDLITVKDAKIVVESQDEDKIQVRVDLTGDATQRVFDKV 126 (249)
Q Consensus 75 ~~~sg~~~s~~~~~~~s~~~~MkVtve~le~~kikLtVeVp~eevq~~~dka 126 (249)
.-.||..++.++. ..|+|.|....+ + +.++|+...+=..+.+.
T Consensus 3 ~~~~~~~~~~~~~------~~m~I~Vk~~~g-~--~~l~v~~~~TV~~LK~~ 45 (106)
T 1wx7_A 3 SGSSGSPAPVQDP------HLIKVTVKTPKD-K--EDFSVTDTCTIQQLKEE 45 (106)
T ss_dssp CCCCCCCSCCCCS------SEEEEEEECSSC-E--EEEEEETTCCHHHHHHH
T ss_pred CCCCCCCCCCCCC------ceEEEEEEeCCC-c--EEEEECCCCcHHHHHHH
Confidence 3457777765532 348999988776 3 35666654443333333
Done!