Query 025692
Match_columns 249
No_of_seqs 93 out of 118
Neff 3.8
Searched_HMMs 46136
Date Fri Mar 29 08:29:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025692.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025692hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07851 TMPIT: TMPIT-like pro 100.0 7E-110 2E-114 772.3 22.7 228 1-241 101-330 (330)
2 KOG4758 Predicted membrane pro 100.0 5.7E-83 1.2E-87 555.6 13.1 212 13-238 1-214 (220)
3 KOG4758 Predicted membrane pro 98.5 6.8E-08 1.5E-12 85.7 2.5 89 3-91 97-195 (220)
4 PF00880 Nebulin: Nebulin repe 61.5 4.3 9.2E-05 25.1 0.9 14 14-27 15-28 (29)
5 KOG3312 Predicted membrane pro 53.6 48 0.001 29.5 6.4 21 63-83 143-163 (186)
6 PF01151 ELO: GNS1/SUR4 family 51.9 1.8E+02 0.0039 26.1 11.3 79 83-192 115-193 (250)
7 KOG4418 Predicted membrane pro 51.8 6.4 0.00014 39.2 0.8 25 88-112 15-39 (438)
8 PLN02189 cellulose synthase 34.9 24 0.00052 38.9 2.0 29 66-96 860-888 (1040)
9 PLN02190 cellulose synthase-li 33.9 22 0.00049 37.9 1.6 17 14-30 188-204 (756)
10 KOG4054 Uncharacterized conser 33.7 2.7E+02 0.0058 25.2 8.0 64 130-199 105-174 (183)
11 PLN02893 Cellulose synthase-li 33.3 23 0.0005 37.6 1.6 21 13-33 190-210 (734)
12 KOG3488 Dolichol phosphate-man 32.3 65 0.0014 25.3 3.5 26 203-228 45-72 (81)
13 PLN02248 cellulose synthase-li 31.8 25 0.00055 39.1 1.6 26 68-95 957-982 (1135)
14 PLN02195 cellulose synthase A 30.9 27 0.00058 38.3 1.6 17 14-30 350-366 (977)
15 KOG1341 Na+/K+ transporter [In 30.8 1.4E+02 0.003 32.1 6.6 69 20-106 454-523 (854)
16 PLN02400 cellulose synthase 30.7 27 0.00059 38.7 1.6 17 14-30 454-470 (1085)
17 COG5608 LEA14-like dessication 29.9 15 0.00033 32.4 -0.4 15 79-93 105-119 (161)
18 PLN02638 cellulose synthase A 29.7 33 0.00072 38.0 2.0 20 14-33 447-466 (1079)
19 PLN02915 cellulose synthase A 29.6 29 0.00063 38.3 1.6 27 68-96 864-890 (1044)
20 PF03552 Cellulose_synt: Cellu 29.5 34 0.00073 36.4 2.0 27 68-96 546-572 (720)
21 PLN02436 cellulose synthase A 28.7 31 0.00066 38.3 1.6 17 14-30 463-479 (1094)
22 smart00227 NEBU The Nebulin re 27.8 26 0.00056 21.4 0.5 11 15-25 21-31 (31)
23 PLN02915 cellulose synthase A 27.7 1.3E+02 0.0029 33.4 6.1 26 205-230 971-996 (1044)
24 KOG2706 Predicted membrane pro 27.3 1.2E+02 0.0026 30.1 5.1 49 58-126 244-298 (476)
25 PTZ00251 fatty acid elongase; 25.5 5.5E+02 0.012 23.9 10.1 76 85-192 138-213 (272)
26 PF06305 DUF1049: Protein of u 25.3 1.3E+02 0.0028 21.3 3.8 33 208-240 18-50 (68)
27 KOG1237 H+/oligopeptide sympor 25.2 1.9E+02 0.0041 29.6 6.3 58 172-229 457-514 (571)
28 PF14147 Spore_YhaL: Sporulati 24.0 43 0.00093 24.6 1.1 19 88-106 2-20 (52)
29 PF15048 OSTbeta: Organic solu 23.8 1.1E+02 0.0023 26.2 3.6 35 201-235 30-64 (125)
30 KOG1629 Bax-mediated apoptosis 23.4 3.1E+02 0.0067 25.5 6.7 58 182-239 163-229 (235)
31 PLN02189 cellulose synthase 23.0 1.9E+02 0.0041 32.3 6.1 21 205-225 967-987 (1040)
32 PRK11056 hypothetical protein; 22.5 4.8E+02 0.01 22.1 7.2 27 221-247 92-118 (120)
No 1
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=100.00 E-value=7e-110 Score=772.34 Aligned_cols=228 Identities=36% Similarity=0.620 Sum_probs=220.1
Q ss_pred CCcccceeeecchhhhhhhHHhhhhhhhhHHHHHHHHHHHHH-HHHhhhhcCCCCChhhHHHHHHHHHHhHHHHHhhhhh
Q 025692 1 MFIGPINVRASRKDVQLKVKEEYNSYRDRTALLFLLFPSTLL-ILRSWIWDGCLPAFPVQLYQAWLLFLYTGLALRENIL 79 (249)
Q Consensus 1 ~iLG~vNvt~l~k~~kf~yKdEYEkFKl~~tii~l~~~~~~l-~~~~~v~d~~f~~l~~q~~~~~LvwyYcTLtiREsIL 79 (249)
++||||||++++|++||+|||||||||+++|+|++++|++|+ ++++|+.|+ +|+|||||||||||||||||
T Consensus 101 liLGnVNVsll~k~~kf~yKdEYEkFKl~~tii~l~~~~~~~~~~~~r~~d~--------~~~f~lvwyY~tLtiRE~IL 172 (330)
T PF07851_consen 101 LILGNVNVSLLSKQAKFKYKDEYEKFKLYLTIILLLFAVALLFLLNYRVLDQ--------LFNFLLVWYYCTLTIRESIL 172 (330)
T ss_pred eecccccceecccccccchhhhHHHHHHHHHHHHHHHHHHHHHHcChHHHHH--------HHHHHHHHHHHHHHHHHHhh
Confidence 589999999999999999999999999999999999999766 556787775 77899999999999999999
Q ss_pred hcCCCCCchhHHHHHHHHHHhhhheeecccCCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhHHHhHhcCcccc
Q 025692 80 RINGSDIRPWWIYHHYCAMLMALVSLTWEIKGQPNCAQKQRGVQLFLQWAMMQGVAMLLQNRYQRQRLYTRIALGKAKRM 159 (249)
Q Consensus 80 ~vNGSrIkgWWv~HHY~S~~lsgv~LtWp~~~~p~~~~~~~~~~qFl~fs~~qs~Vq~lQ~~YQrg~LYrl~ALGe~~~M 159 (249)
+||||||||||+.|||+||++|||+|||| ||..+|+||+|||.||+|||+||++|||||||||||||||||||+|
T Consensus 173 ~~NGS~Ik~WW~~HHy~s~~~s~v~Ltwp-----~~~~~~~fr~~fl~f~~~~~~vq~lQ~~YQ~~~Ly~l~AlG~~~~m 247 (330)
T PF07851_consen 173 IVNGSRIKGWWVFHHYISTFLSGVMLTWP-----DGEAYQKFRPQFLLFSLYQSVVQFLQYRYQRGCLYRLRALGKRHNM 247 (330)
T ss_pred ccCCCcchHHHHHHHHHHHHHHhccccCC-----CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhccCccc
Confidence 99999999999999999999999999995 7889999999999999999999999999999999999999999999
Q ss_pred cee-ecCccccccchhhHHHHHHHHHHHHHHHHHhhhhhhccCCCCcchHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q 025692 160 DVV-WGETAGVDGQLWLLCPILFILQGFEAYVGLLLLKTALVGVVPEWQVSFCGALLVLMAVGNFINTVQTLMTKSRFKA 238 (249)
Q Consensus 160 Dvt-~g~~~~~~g~LtfLlPfLf~g~~fQlYna~~L~~~s~~~~~~eWQV~~~~llf~il~~GNf~TT~~vv~~K~~~~~ 238 (249)
||| +|++|||++||+||+||||+||+||+||||+||+++.+++|+||||+|||++|++||+|||+||++|+++|+|+++
T Consensus 248 dvt~eG~~s~~~~~L~fLlPfLf~~~~~q~yn~~~l~~~~~~~~~~ewqv~~~~~~f~~l~~gN~~tt~~v~~~K~~~~~ 327 (330)
T PF07851_consen 248 DVTVEGFQSWMWRGLTFLLPFLFFGQFFQLYNAYTLFELSYHPECREWQVFVCGLLFLILFLGNFFTTLKVVHQKLKKKA 327 (330)
T ss_pred eeeecccccchhccHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhh
Confidence 999 8999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhh
Q 025692 239 KMK 241 (249)
Q Consensus 239 ~~~ 241 (249)
|||
T Consensus 328 ~~~ 330 (330)
T PF07851_consen 328 KMK 330 (330)
T ss_pred ccC
Confidence 986
No 2
>KOG4758 consensus Predicted membrane protein [General function prediction only]
Probab=100.00 E-value=5.7e-83 Score=555.62 Aligned_cols=212 Identities=28% Similarity=0.374 Sum_probs=203.5
Q ss_pred hhhhhhhHHhhhhhhhhHHHHHHHHHHHH-HHHHhhhhcCCCCChhhHHHHHHHHHHhHHHHHhhhhhhcCCCCCchhHH
Q 025692 13 KDVQLKVKEEYNSYRDRTALLFLLFPSTL-LILRSWIWDGCLPAFPVQLYQAWLLFLYTGLALRENILRINGSDIRPWWI 91 (249)
Q Consensus 13 k~~kf~yKdEYEkFKl~~tii~l~~~~~~-l~~~~~v~d~~f~~l~~q~~~~~LvwyYcTLtiREsIL~vNGSrIkgWWv 91 (249)
+|+|++|||||||||++.++|.+++|+++ ..+++|..|.+ ++|+|||||||||||||||++| |||||||+
T Consensus 1 ~~~k~~~Kd~~ek~K~~~~~~~~~is~~~~~~l~~R~~~~a--------f~fllvwyycTltiresil~~n-srikgww~ 71 (220)
T KOG4758|consen 1 MEVEEEVKQIIDEVKELHDSAASFISFSSQQELNLRQKASA--------FDFLLVWYYCTLTIRESILPKN-SRIKGWWA 71 (220)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHheeehhhhcccch-hhhhHHHH
Confidence 47899999999999999999999999997 67889999984 4588999999999999999999 99999999
Q ss_pred HHHHHHHHhhhheeecccCCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhHHHhHhcCcccccee-ecCccccc
Q 025692 92 YHHYCAMLMALVSLTWEIKGQPNCAQKQRGVQLFLQWAMMQGVAMLLQNRYQRQRLYTRIALGKAKRMDVV-WGETAGVD 170 (249)
Q Consensus 92 ~HHY~S~~lsgv~LtWp~~~~p~~~~~~~~~~qFl~fs~~qs~Vq~lQ~~YQrg~LYrl~ALGe~~~MDvt-~g~~~~~~ 170 (249)
.|||+|+.+|||||||| ++..+|+||+||+.||++||+||++|++||||||||+|||||||+||+| +|+.||+.
T Consensus 72 ~hh~Vst~~sgvlltwP-----qG~~~q~Fr~qf~~fsl~~s~vq~lq~~Yqrg~lYRlkalger~~~d~Tvegf~SwmW 146 (220)
T KOG4758|consen 72 RHHLVSTETSGVLLTWP-----QGRFYQKFRNQFLVFSLYQSVVQFLQYYYQRGCLYRLKALGERHFMDLTVEGFQSWMW 146 (220)
T ss_pred HHhhhhhhhcceeecCC-----CcHHHHHHHhHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhccChhHHHHHHHHHH
Confidence 99999999999999996 7889999999999999999999999999999999999999999999999 58999999
Q ss_pred cchhhHHHHHHHHHHHHHHHHHhhhhhhccCCCCcchHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q 025692 171 GQLWLLCPILFILQGFEAYVGLLLLKTALVGVVPEWQVSFCGALLVLMAVGNFINTVQTLMTKSRFKA 238 (249)
Q Consensus 171 g~LtfLlPfLf~g~~fQlYna~~L~~~s~~~~~~eWQV~~~~llf~il~~GNf~TT~~vv~~K~~~~~ 238 (249)
+||+||+||||+||+||+|||++||.++.+|+|.||||.++|-+|+++|+||+.||++||+.|.+.+.
T Consensus 147 rGltfllPflf~g~~~QlynAwtLf~lA~~~~~~~w~v~~~s~~fl~lF~gn~~ttl~vV~~k~~~~r 214 (220)
T KOG4758|consen 147 RGLTFLLPFLFIGHFWQLYNAWTLFLLAGLPMCEEWQVAVGSFIFLLLFLGNFPTTLMVVHIKIREER 214 (220)
T ss_pred CcchhhhhHHHhhHHHHHHHHHHHHHHccCccchHHHHHhccchHHHHHhcCCccchhhhhHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999998743
No 3
>KOG4758 consensus Predicted membrane protein [General function prediction only]
Probab=98.48 E-value=6.8e-08 Score=85.72 Aligned_cols=89 Identities=28% Similarity=0.348 Sum_probs=83.6
Q ss_pred cccceeeecchhhhhhhHHhhhh---hhhhHHHHHHHHHHHHHHHHhhhhcCCCCChh-------hHHHHHHHHHHhHHH
Q 025692 3 IGPINVRASRKDVQLKVKEEYNS---YRDRTALLFLLFPSTLLILRSWIWDGCLPAFP-------VQLYQAWLLFLYTGL 72 (249)
Q Consensus 3 LG~vNvt~l~k~~kf~yKdEYEk---FKl~~tii~l~~~~~~l~~~~~v~d~~f~~l~-------~q~~~~~LvwyYcTL 72 (249)
-|++|+..+.++.....|++|.+ +|++...-...++.+...+.++.|.++.+.+| +|+|++|.++-|..+
T Consensus 97 r~qf~~fsl~~s~vq~lq~~Yqrg~lYRlkalger~~~d~Tvegf~SwmWrGltfllPflf~g~~~QlynAwtLf~lA~~ 176 (220)
T KOG4758|consen 97 RNQFLVFSLYQSVVQFLQYYYQRGCLYRLKALGERHFMDLTVEGFQSWMWRGLTFLLPFLFIGHFWQLYNAWTLFLLAGL 176 (220)
T ss_pred HhHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhccChhHHHHHHHHHHCcchhhhhHHHhhHHHHHHHHHHHHHHccC
Confidence 47889999999999999999999 99999999899999999999999999998999 999999999999999
Q ss_pred HHhhhhhhcCCCCCchhHH
Q 025692 73 ALRENILRINGSDIRPWWI 91 (249)
Q Consensus 73 tiREsIL~vNGSrIkgWWv 91 (249)
..||++++.|||.|..|--
T Consensus 177 ~~~~~w~v~~~s~~fl~lF 195 (220)
T KOG4758|consen 177 PMCEEWQVAVGSFIFLLLF 195 (220)
T ss_pred ccchHHHHHhccchHHHHH
Confidence 9999999999999999843
No 4
>PF00880 Nebulin: Nebulin repeat; InterPro: IPR000900 Nebulin is a 600-800kDa protein found in the thin filaments of striated vertebrate muscle. It is presumed to play a role in binding and stabilising F-actin [], essentially by providing a template for actin polymerisation (i.e., acting as an "actin zipper"). The amino acid sequence shows a uniform repeating pattern along its length, a repeated 35-residue motif constituting up to 97% of the polypeptide. Analysis of individual repeats reveals a progressive N- to C-terminal divergence, coupled with an increasing alpha-helix propensity. This correlates with a higher binding affinity for F-actin at the C terminus. Thus, it is postulated that once the repeats have formed an initiation complex, the whole length of the nebulin molecule may then associate in a highly co-operative process with the thin filament, in a manner similar to the closing of a zipper [].
Probab=61.50 E-value=4.3 Score=25.09 Aligned_cols=14 Identities=29% Similarity=0.567 Sum_probs=12.0
Q ss_pred hhhhhhHHhhhhhh
Q 025692 14 DVQLKVKEEYNSYR 27 (249)
Q Consensus 14 ~~kf~yKdEYEkFK 27 (249)
.+..+||++||+.|
T Consensus 15 ~Sd~~Yk~~~ek~k 28 (29)
T PF00880_consen 15 QSDVKYKEDYEKSK 28 (29)
T ss_pred HHHHHHHHHHHHcc
Confidence 46789999999987
No 5
>KOG3312 consensus Predicted membrane protein [Function unknown]
Probab=53.64 E-value=48 Score=29.48 Aligned_cols=21 Identities=24% Similarity=0.581 Sum_probs=17.9
Q ss_pred HHHHHHhHHHHHhhhhhhcCC
Q 025692 63 AWLLFLYTGLALRENILRING 83 (249)
Q Consensus 63 ~~LvwyYcTLtiREsIL~vNG 83 (249)
|..+|.-||++||.||-+.=|
T Consensus 143 fiFLYiLCtmsiRqNlQK~LG 163 (186)
T KOG3312|consen 143 FIFLYILCTMSIRQNLQKILG 163 (186)
T ss_pred HHHHHHHHHHHHHHHHHHHhC
Confidence 567889999999999987766
No 6
>PF01151 ELO: GNS1/SUR4 family; InterPro: IPR002076 This group of eukaryotic integral membrane proteins are evolutionary related, but exact function has not yet clearly been established. The proteins have from 290 to 435 amino acid residues. Structurally, they seem to be formed of three sections: a N-terminal region with two transmembrane domains, a central hydrophilic loop and a C-terminal region that contains from one to three transmembrane domains. Members of this family are involved in long chain fatty acid elongation systems that produce the 26-carbon precursors for ceramide and sphingolipid synthesis []. Predicted to be integral membrane proteins, in eukaryotes they are probably located on the endoplasmic reticulum. Yeast ELO3 (P40319 from SWISSPROT) affects plasma membrane H+-ATPase activity, and may act on a glucose-signalling pathway that controls the expression of several genes that are transcriptionally regulated by glucose such as PMA1 []. ; GO: 0016021 integral to membrane
Probab=51.92 E-value=1.8e+02 Score=26.14 Aligned_cols=79 Identities=20% Similarity=0.285 Sum_probs=50.6
Q ss_pred CCCCchhHHHHHHHHHHhhhheeecccCCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhHHHhHhcCcccccee
Q 025692 83 GSDIRPWWIYHHYCAMLMALVSLTWEIKGQPNCAQKQRGVQLFLQWAMMQGVAMLLQNRYQRQRLYTRIALGKAKRMDVV 162 (249)
Q Consensus 83 GSrIkgWWv~HHY~S~~lsgv~LtWp~~~~p~~~~~~~~~~qFl~fs~~qs~Vq~lQ~~YQrg~LYrl~ALGe~~~MDvt 162 (249)
+.++--==+.||-.....+-..+.++ |++.. ....+.-++|..+=|-| |-+.|+|-|. .+.
T Consensus 115 kK~lsfLHvYHH~~~~~~~w~~~~~~----~~~~~--------~~~~~~N~~VH~iMY~Y-----Y~l~a~g~~~-~~~- 175 (250)
T PF01151_consen 115 KKQLSFLHVYHHASTLLYCWISYKYG----PGGQI--------WFIAALNSFVHVIMYSY-----YFLSALGIRK-VPR- 175 (250)
T ss_pred CCCcchhHHhhhhhhhhhhhheeeec----cccch--------hHHHHHHHHHHHHHHHH-----HHHHhccccc-chh-
Confidence 44665555689998888888888775 22211 22447789999999888 8899999432 111
Q ss_pred ecCccccccchhhHHHHHHHHHHHHHHHHH
Q 025692 163 WGETAGVDGQLWLLCPILFILQGFEAYVGL 192 (249)
Q Consensus 163 ~g~~~~~~g~LtfLlPfLf~g~~fQlYna~ 192 (249)
..=|.+-.+|+.|+-.+.
T Consensus 176 ------------~~k~~IT~~Qi~QF~~~~ 193 (250)
T PF01151_consen 176 ------------WWKKYITSLQIVQFVIGI 193 (250)
T ss_pred ------------HHHHHHhHHhhhhhHHHH
Confidence 123455566777765544
No 7
>KOG4418 consensus Predicted membrane protein [Function unknown]
Probab=51.78 E-value=6.4 Score=39.20 Aligned_cols=25 Identities=24% Similarity=0.664 Sum_probs=22.9
Q ss_pred hhHHHHHHHHHHhhhheeecccCCC
Q 025692 88 PWWIYHHYCAMLMALVSLTWEIKGQ 112 (249)
Q Consensus 88 gWWv~HHY~S~~lsgv~LtWp~~~~ 112 (249)
-||..||++-+..++.+.|||.++.
T Consensus 15 ~w~rH~gF~iTyt~lLlkiwr~S~~ 39 (438)
T KOG4418|consen 15 TWWRHHGFIITYTYLLLKIWRTSGA 39 (438)
T ss_pred HHHHhhchhhhhhhhHhhcccccce
Confidence 4999999999999999999998764
No 8
>PLN02189 cellulose synthase
Probab=34.93 E-value=24 Score=38.90 Aligned_cols=29 Identities=24% Similarity=0.582 Sum_probs=22.3
Q ss_pred HHHhHHHHHhhhhhhcCCCCCchhHHHHHHH
Q 025692 66 LFLYTGLALRENILRINGSDIRPWWIYHHYC 96 (249)
Q Consensus 66 vwyYcTLtiREsIL~vNGSrIkgWWv~HHY~ 96 (249)
+-.+++..+=| .+-.|-.++.||+.+-++
T Consensus 860 f~~~~~~~llE--~~~sG~s~~~WWrnQq~w 888 (1040)
T PLN02189 860 FMSIFATGILE--LRWSGVSIEEWWRNEQFW 888 (1040)
T ss_pred HHHHHHHHHHH--HHhcCCcHHHHhhhhhHH
Confidence 34677778888 555688899999998776
No 9
>PLN02190 cellulose synthase-like protein
Probab=33.93 E-value=22 Score=37.86 Aligned_cols=17 Identities=18% Similarity=0.176 Sum_probs=0.0
Q ss_pred hhhhhhHHhhhhhhhhH
Q 025692 14 DVQLKVKEEYNSYRDRT 30 (249)
Q Consensus 14 ~~kf~yKdEYEkFKl~~ 30 (249)
+|+.+.|+|||+||.+.
T Consensus 188 ~e~~~~K~eYee~k~ri 204 (756)
T PLN02190 188 KDWEMTKREYEKLSRKV 204 (756)
T ss_pred HHHHHHHHHHHHHHHHH
No 10
>KOG4054 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.69 E-value=2.7e+02 Score=25.16 Aligned_cols=64 Identities=17% Similarity=0.225 Sum_probs=41.5
Q ss_pred HHHHHHH----HHHHHhhhhhhHHHhHhcCcccccee-ecCccccccchhhHH-HHHHHHHHHHHHHHHhhhhhhc
Q 025692 130 MMQGVAM----LLQNRYQRQRLYTRIALGKAKRMDVV-WGETAGVDGQLWLLC-PILFILQGFEAYVGLLLLKTAL 199 (249)
Q Consensus 130 ~~qs~Vq----~lQ~~YQrg~LYrl~ALGe~~~MDvt-~g~~~~~~g~LtfLl-PfLf~g~~fQlYna~~L~~~s~ 199 (249)
+-.++|+ +.+.-||=-++.-+-+++|+++- .| .++-++ +.+. -.-+-.|+||+|-+..|..-..
T Consensus 105 ~a~~lf~i~p~~~~~~~~f~~v~e~~t~~e~~~s-~~~~~~~p~-----~y~~~~la~qVh~~~ly~~~~Lv~aw~ 174 (183)
T KOG4054|consen 105 IAMGLFMIFPLVYGVGGQFCAVRELATMEERNSS-TTVKLEFPG-----WYLFLVLAVQVHGFQLYFSKKLVDAWF 174 (183)
T ss_pred HHHHHHHHHHHHHhcccccHHHHHHHHHcccccc-ceeeecccH-----HHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 4445666 55666666788888999999987 44 222222 2222 2234579999999999976543
No 11
>PLN02893 Cellulose synthase-like protein
Probab=33.35 E-value=23 Score=37.61 Aligned_cols=21 Identities=19% Similarity=0.200 Sum_probs=17.0
Q ss_pred hhhhhhhHHhhhhhhhhHHHH
Q 025692 13 KDVQLKVKEEYNSYRDRTALL 33 (249)
Q Consensus 13 k~~kf~yKdEYEkFKl~~tii 33 (249)
.+|+-+.|+|||+||.++.-.
T Consensus 190 ~~e~~~~k~~Yee~k~ri~~~ 210 (734)
T PLN02893 190 SPETEQIKMMYESMKVRVENV 210 (734)
T ss_pred chHHHHHHHHHHHHHHHHHHH
Confidence 358888999999999987743
No 12
>KOG3488 consensus Dolichol phosphate-mannose regulatory protein (DPM2) [Posttranslational modification, protein turnover, chaperones]
Probab=32.31 E-value=65 Score=25.32 Aligned_cols=26 Identities=27% Similarity=0.549 Sum_probs=21.2
Q ss_pred CCcch--HhHHHHHHHHHHHhHHHHHHH
Q 025692 203 VPEWQ--VSFCGALLVLMAVGNFINTVQ 228 (249)
Q Consensus 203 ~~eWQ--V~~~~llf~il~~GNf~TT~~ 228 (249)
.+||- +++.+-+|++..+|-|+..++
T Consensus 45 pr~yAi~iPvaagl~ll~lig~Fis~vM 72 (81)
T KOG3488|consen 45 PREYAITIPVAAGLFLLCLIGTFISLVM 72 (81)
T ss_pred ChhHHhhhHHHHHHHHHHHHHHHHHHHh
Confidence 45676 688999999999999987665
No 13
>PLN02248 cellulose synthase-like protein
Probab=31.81 E-value=25 Score=39.06 Aligned_cols=26 Identities=23% Similarity=0.482 Sum_probs=17.5
Q ss_pred HhHHHHHhhhhhhcCCCCCchhHHHHHH
Q 025692 68 LYTGLALRENILRINGSDIRPWWIYHHY 95 (249)
Q Consensus 68 yYcTLtiREsIL~vNGSrIkgWWv~HHY 95 (249)
-++.+++-|-.. -|-.++.||+.+-+
T Consensus 957 ~~~~~sllE~~w--sGvsl~~WWrnQq~ 982 (1135)
T PLN02248 957 TLCLLAVLEIKW--SGITLEEWWRNEQF 982 (1135)
T ss_pred HHHHHHHHHHhh--ccccHHHHhhhhhe
Confidence 355666666552 37779999998755
No 14
>PLN02195 cellulose synthase A
Probab=30.87 E-value=27 Score=38.30 Aligned_cols=17 Identities=24% Similarity=0.522 Sum_probs=0.0
Q ss_pred hhhhhhHHhhhhhhhhH
Q 025692 14 DVQLKVKEEYNSYRDRT 30 (249)
Q Consensus 14 ~~kf~yKdEYEkFKl~~ 30 (249)
+|+.+.|+|||+||.++
T Consensus 350 ~e~~~~K~eYEe~k~RI 366 (977)
T PLN02195 350 KERRAMKRDYEEYKVRV 366 (977)
T ss_pred HHHHHHHHHHHHHHHHH
No 15
>KOG1341 consensus Na+/K+ transporter [Inorganic ion transport and metabolism]
Probab=30.77 E-value=1.4e+02 Score=32.08 Aligned_cols=69 Identities=25% Similarity=0.454 Sum_probs=45.5
Q ss_pred HHhhhhhhhhHHHHHHHHHHHHHHHHhhhhcCCCCChhhHHHHHHHHHHhHHHHHhhhhhhcCCCCCchhHHHHHHHHHH
Q 025692 20 KEEYNSYRDRTALLFLLFPSTLLILRSWIWDGCLPAFPVQLYQAWLLFLYTGLALRENILRINGSDIRPWWIYHHYCAML 99 (249)
Q Consensus 20 KdEYEkFKl~~tii~l~~~~~~l~~~~~v~d~~f~~l~~q~~~~~LvwyYcTLtiREsIL~vNGSrIkgWWv~HHY~S~~ 99 (249)
+=||+.-|..++++..-+-+.+.+ .+-.+++|-|..-|=||=| +.+|-+ ++||-.---.|++
T Consensus 454 gIEyRAlk~Lcsil~vY~l~~nIv----------------afV~llv~i~t~k~~~eVv-~~~gis-p~ww~~FTs~S~F 515 (854)
T KOG1341|consen 454 GIEYRALKCLCSILVVYFLGWNIV----------------AFVTLLVFIYTAKTSREVV-RSKGIS-PGWWAFFTSMSAF 515 (854)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHhhcchhhhhhc-ccCCCC-cchhhhhhHHHHH
Confidence 457999888877665422221111 3346799999999999954 555543 6899887777776
Q ss_pred h-hhheee
Q 025692 100 M-ALVSLT 106 (249)
Q Consensus 100 l-sgv~Lt 106 (249)
- .|..||
T Consensus 516 ~nlGfslt 523 (854)
T KOG1341|consen 516 NNLGFSLT 523 (854)
T ss_pred hccCcccC
Confidence 5 344554
No 16
>PLN02400 cellulose synthase
Probab=30.69 E-value=27 Score=38.68 Aligned_cols=17 Identities=24% Similarity=0.475 Sum_probs=0.0
Q ss_pred hhhhhhHHhhhhhhhhH
Q 025692 14 DVQLKVKEEYNSYRDRT 30 (249)
Q Consensus 14 ~~kf~yKdEYEkFKl~~ 30 (249)
+|+.+.|+|||+||.++
T Consensus 454 ~e~~~mK~eYEe~k~RI 470 (1085)
T PLN02400 454 KERRAMKREYEEFKVRI 470 (1085)
T ss_pred HHHHHHHHHHHHHHHHH
No 17
>COG5608 LEA14-like dessication related protein [Defense mechanisms]
Probab=29.87 E-value=15 Score=32.35 Aligned_cols=15 Identities=47% Similarity=1.300 Sum_probs=13.4
Q ss_pred hhcCCCCCchhHHHH
Q 025692 79 LRINGSDIRPWWIYH 93 (249)
Q Consensus 79 L~vNGSrIkgWWv~H 93 (249)
++.|-|+||.||+.|
T Consensus 105 l~~d~~~~ke~w~~h 119 (161)
T COG5608 105 LRLDNSKIKEWWVTH 119 (161)
T ss_pred EEEehHHHHHHHHHH
Confidence 568899999999988
No 18
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=29.72 E-value=33 Score=38.01 Aligned_cols=20 Identities=25% Similarity=0.376 Sum_probs=0.0
Q ss_pred hhhhhhHHhhhhhhhhHHHH
Q 025692 14 DVQLKVKEEYNSYRDRTALL 33 (249)
Q Consensus 14 ~~kf~yKdEYEkFKl~~tii 33 (249)
+|+-+.|+|||+||.++...
T Consensus 447 ~e~~~mK~eYEe~k~RIe~l 466 (1079)
T PLN02638 447 KDRRAMKREYEEFKVRINGL 466 (1079)
T ss_pred HHHHHHHHHHHHHHHHHHHH
No 19
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=29.57 E-value=29 Score=38.30 Aligned_cols=27 Identities=22% Similarity=0.410 Sum_probs=18.2
Q ss_pred HhHHHHHhhhhhhcCCCCCchhHHHHHHH
Q 025692 68 LYTGLALRENILRINGSDIRPWWIYHHYC 96 (249)
Q Consensus 68 yYcTLtiREsIL~vNGSrIkgWWv~HHY~ 96 (249)
-++...+.| .+-.|-.|+.||..+-|+
T Consensus 864 s~~~~~lLE--~~wsG~si~~WWrnQq~w 890 (1044)
T PLN02915 864 SIIATSVLE--LRWSGVSIEDLWRNEQFW 890 (1044)
T ss_pred HHHHHHHHH--HHhcCCCHHHHHhhhhHH
Confidence 445556667 334566688888888776
No 20
>PF03552 Cellulose_synt: Cellulose synthase; InterPro: IPR005150 Cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues, is the major component of wood and thus paper, and is synthesized by plants, most algae, some bacteria and fungi, and even some animals. The genes that synthesize cellulose in higher plants differ greatly from the well-characterised genes found in Acetobacter and Agrobacterium spp. More correctly designated as "cellulose synthase catalytic subunits", plant cellulose synthase (CesA) proteins are integral membrane proteins, approximately 1,000 amino acids in length. There are a number of highly conserved residues, including several motifs shown to be necessary for processive glycosyltransferase activity [].; GO: 0016760 cellulose synthase (UDP-forming) activity, 0030244 cellulose biosynthetic process, 0016020 membrane
Probab=29.46 E-value=34 Score=36.37 Aligned_cols=27 Identities=30% Similarity=0.598 Sum_probs=19.1
Q ss_pred HhHHHHHhhhhhhcCCCCCchhHHHHHHH
Q 025692 68 LYTGLALRENILRINGSDIRPWWIYHHYC 96 (249)
Q Consensus 68 yYcTLtiREsIL~vNGSrIkgWWv~HHY~ 96 (249)
-+++.++=|. +.-|-.|++||+.+.++
T Consensus 546 ~~~~~~llE~--~wsG~si~~WWrnQq~W 572 (720)
T PF03552_consen 546 SIYAYSLLEF--RWSGVSIREWWRNQQFW 572 (720)
T ss_pred HHHHHHHHHH--HhccCcHHHhhccccee
Confidence 3667777784 34566799999888764
No 21
>PLN02436 cellulose synthase A
Probab=28.70 E-value=31 Score=38.29 Aligned_cols=17 Identities=18% Similarity=0.421 Sum_probs=0.0
Q ss_pred hhhhhhHHhhhhhhhhH
Q 025692 14 DVQLKVKEEYNSYRDRT 30 (249)
Q Consensus 14 ~~kf~yKdEYEkFKl~~ 30 (249)
+|+-+.|+|||+||.++
T Consensus 463 ~e~~~mKreYEe~K~RI 479 (1094)
T PLN02436 463 RERRAMKREYEEFKVKI 479 (1094)
T ss_pred HHHHHHHHHHHHHHHHH
No 22
>smart00227 NEBU The Nebulin repeat is present also in Las1. Tandem arrays of these repeats are known to bind actin.
Probab=27.79 E-value=26 Score=21.42 Aligned_cols=11 Identities=36% Similarity=0.670 Sum_probs=9.3
Q ss_pred hhhhhHHhhhh
Q 025692 15 VQLKVKEEYNS 25 (249)
Q Consensus 15 ~kf~yKdEYEk 25 (249)
+..+||++||+
T Consensus 21 S~~~YK~~~e~ 31 (31)
T smart00227 21 SDVKYKEDYEK 31 (31)
T ss_pred HHHHHHHhhcC
Confidence 56789999986
No 23
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=27.75 E-value=1.3e+02 Score=33.42 Aligned_cols=26 Identities=12% Similarity=0.294 Sum_probs=15.2
Q ss_pred cchHhHHHHHHHHHHHhHHHHHHHHH
Q 025692 205 EWQVSFCGALLVLMAVGNFINTVQTL 230 (249)
Q Consensus 205 eWQV~~~~llf~il~~GNf~TT~~vv 230 (249)
.|+.....++|....+-|+.-.++-+
T Consensus 971 ~~g~l~~~l~~~~wvvv~lyPf~kgL 996 (1044)
T PLN02915 971 SWGPLFGKLFFAFWVIVHLYPFLKGL 996 (1044)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47766666666555555555555433
No 24
>KOG2706 consensus Predicted membrane protein [Function unknown]
Probab=27.30 E-value=1.2e+02 Score=30.11 Aligned_cols=49 Identities=29% Similarity=0.436 Sum_probs=30.2
Q ss_pred hHHHHHHHHH------HhHHHHHhhhhhhcCCCCCchhHHHHHHHHHHhhhheeecccCCCCcchhhhhhhhhHH
Q 025692 58 VQLYQAWLLF------LYTGLALRENILRINGSDIRPWWIYHHYCAMLMALVSLTWEIKGQPNCAQKQRGVQLFL 126 (249)
Q Consensus 58 ~q~~~~~Lvw------yYcTLtiREsIL~vNGSrIkgWWv~HHY~S~~lsgv~LtWp~~~~p~~~~~~~~~~qFl 126 (249)
.++..+|+.+ .|.++||-|+|-.. +|.-. .|+.++|+.-.--+-+++|.
T Consensus 244 ~RLlYa~~~FftFkaRiYs~laiaEciCti-------------------aGfGa-YP~~SdPk~geGPr~~~a~~ 298 (476)
T KOG2706|consen 244 TRLLYAALIFFTFKARIYSALAIAECICTI-------------------AGFGA-YPAASDPKIGEGPRDLNAFD 298 (476)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHH-------------------hcccc-ccccCCCccCcCchhhhhhh
Confidence 4455556655 69999999999443 34433 68888885443333344543
No 25
>PTZ00251 fatty acid elongase; Provisional
Probab=25.55 E-value=5.5e+02 Score=23.90 Aligned_cols=76 Identities=21% Similarity=0.233 Sum_probs=46.7
Q ss_pred CCchhHHHHHHHHHHhhhheeecccCCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhHHHhHhcCccccceeec
Q 025692 85 DIRPWWIYHHYCAMLMALVSLTWEIKGQPNCAQKQRGVQLFLQWAMMQGVAMLLQNRYQRQRLYTRIALGKAKRMDVVWG 164 (249)
Q Consensus 85 rIkgWWv~HHY~S~~lsgv~LtWp~~~~p~~~~~~~~~~qFl~fs~~qs~Vq~lQ~~YQrg~LYrl~ALGe~~~MDvt~g 164 (249)
++--==+.||-.....+=.. +.. | . .-+..+.+.-++|..+=|-| |-+.|+|.+.. +.
T Consensus 138 qvsFLHvYHH~~~~~~~w~~--~~~-g---~-------~~~~~~~~lNs~VH~iMY~Y-----Y~lsa~g~~~~--~~-- 195 (272)
T PTZ00251 138 KLPFLSWFHHVTIFLYAWMS--YQQ-G---S-------SIWICAAAMNYFVHSIMYFY-----FALSEAGFKKL--VK-- 195 (272)
T ss_pred CchHHHHHHHHHHHHHHHHH--HhC-C---C-------cHHHHHHHHHHHHHHHHHHH-----HHHHhcCCchh--hh--
Confidence 55555567887664443332 211 1 0 12344678899999999999 89999997632 11
Q ss_pred CccccccchhhHHHHHHHHHHHHHHHHH
Q 025692 165 ETAGVDGQLWLLCPILFILQGFEAYVGL 192 (249)
Q Consensus 165 ~~~~~~g~LtfLlPfLf~g~~fQlYna~ 192 (249)
. .-+.+-..|+.|+-.+.
T Consensus 196 -------~---~kk~IT~lQi~Qfv~~~ 213 (272)
T PTZ00251 196 -------P---FAMYITLLQITQMVGGL 213 (272)
T ss_pred -------H---HHHHHHHHHHHHHHHHH
Confidence 0 12667778888877654
No 26
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=25.26 E-value=1.3e+02 Score=21.31 Aligned_cols=33 Identities=12% Similarity=0.354 Sum_probs=19.4
Q ss_pred HhHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhh
Q 025692 208 VSFCGALLVLMAVGNFINTVQTLMTKSRFKAKM 240 (249)
Q Consensus 208 V~~~~llf~il~~GNf~TT~~vv~~K~~~~~~~ 240 (249)
.+..-++++.+++|=.+..+.......+.+.+-
T Consensus 18 ~pl~l~il~~f~~G~llg~l~~~~~~~~~r~~~ 50 (68)
T PF06305_consen 18 LPLGLLILIAFLLGALLGWLLSLPSRLRLRRRI 50 (68)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555556666666776666666665554444333
No 27
>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]
Probab=25.15 E-value=1.9e+02 Score=29.60 Aligned_cols=58 Identities=17% Similarity=0.194 Sum_probs=50.3
Q ss_pred chhhHHHHHHHHHHHHHHHHHhhhhhhccCCCCcchHhHHHHHHHHHHHhHHHHHHHH
Q 025692 172 QLWLLCPILFILQGFEAYVGLLLLKTALVGVVPEWQVSFCGALLVLMAVGNFINTVQT 229 (249)
Q Consensus 172 ~LtfLlPfLf~g~~fQlYna~~L~~~s~~~~~~eWQV~~~~llf~il~~GNf~TT~~v 229 (249)
....++|=..+.-+-+...+.+..|..+.+.-.+-+-.+-|+-++.+|+||++-++.+
T Consensus 457 Si~W~iPQyvLig~~Evf~~vg~lEFfY~qaP~sMkS~~~al~l~t~a~G~~lss~Lv 514 (571)
T KOG1237|consen 457 SILWQIPQYVLLGAGEVFTSVGGLEFFYSQAPESMKSVATALWLLTVAVGNYLSSVLV 514 (571)
T ss_pred eHHHHHHHHHHHHHHHHHHhhhhHHHhHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577899999999999999999999988755556888999999999999999988766
No 28
>PF14147 Spore_YhaL: Sporulation protein YhaL
Probab=23.97 E-value=43 Score=24.59 Aligned_cols=19 Identities=21% Similarity=0.789 Sum_probs=17.6
Q ss_pred hhHHHHHHHHHHhhhheee
Q 025692 88 PWWIYHHYCAMLMALVSLT 106 (249)
Q Consensus 88 gWWv~HHY~S~~lsgv~Lt 106 (249)
|||+.-=+..++.||.|..
T Consensus 2 PwWvY~vi~gI~~S~ym~v 20 (52)
T PF14147_consen 2 PWWVYFVIAGIIFSGYMAV 20 (52)
T ss_pred cchHHHHHHHHHHHHHHHH
Confidence 8999999999999999876
No 29
>PF15048 OSTbeta: Organic solute transporter subunit beta protein
Probab=23.83 E-value=1.1e+02 Score=26.18 Aligned_cols=35 Identities=14% Similarity=0.278 Sum_probs=26.8
Q ss_pred CCCCcchHhHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 025692 201 GVVPEWQVSFCGALLVLMAVGNFINTVQTLMTKSR 235 (249)
Q Consensus 201 ~~~~eWQV~~~~llf~il~~GNf~TT~~vv~~K~~ 235 (249)
++-..|--.++++.++++.+|=++-...+..++-|
T Consensus 30 ED~tpWNysiL~Ls~vvlvi~~~LLgrsi~ANRnr 64 (125)
T PF15048_consen 30 EDATPWNYSILALSFVVLVISFFLLGRSIQANRNR 64 (125)
T ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHHhHhcccc
Confidence 34445999999999999999988777666555433
No 30
>KOG1629 consensus Bax-mediated apoptosis inhibitor TEGT/BI-1 [Defense mechanisms]
Probab=23.42 E-value=3.1e+02 Score=25.54 Aligned_cols=58 Identities=19% Similarity=0.099 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHhhhhh---------hccCCCCcchHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHhh
Q 025692 182 ILQGFEAYVGLLLLKT---------ALVGVVPEWQVSFCGALLVLMAVGNFINTVQTLMTKSRFKAK 239 (249)
Q Consensus 182 ~g~~fQlYna~~L~~~---------s~~~~~~eWQV~~~~llf~il~~GNf~TT~~vv~~K~~~~~~ 239 (249)
..+-+|+|.|..++-= .....+.+--+..=++.++.=++-=|.-.+..+..|-+.|.+
T Consensus 163 ~v~~~qLY~Gllvfvg~ivvdTQ~IiEKah~GdmDyv~Hsl~lf~dfvsvF~riLiIl~~~~~dK~~ 229 (235)
T KOG1629|consen 163 WVFKFQLYVGLLVFVGFIVVDTQEIIEKAHHGDMDYVQHSLDLFTDFVSVFRRILIILAMNEADKKN 229 (235)
T ss_pred HHHHHHHHHHHHHhheeEEeeHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhh
Confidence 3567899999888731 111112223455566777776776677666666665555544
No 31
>PLN02189 cellulose synthase
Probab=23.03 E-value=1.9e+02 Score=32.31 Aligned_cols=21 Identities=10% Similarity=0.300 Sum_probs=10.4
Q ss_pred cchHhHHHHHHHHHHHhHHHH
Q 025692 205 EWQVSFCGALLVLMAVGNFIN 225 (249)
Q Consensus 205 eWQV~~~~llf~il~~GNf~T 225 (249)
.|+.....+.|-...+=++.=
T Consensus 967 ~~~~~~~~~~~~~wvv~~~~P 987 (1040)
T PLN02189 967 SWGPLFGKLFFAFWVIVHLYP 987 (1040)
T ss_pred ccchhHHHHHHHHHHHHHHHH
Confidence 466655555554444444433
No 32
>PRK11056 hypothetical protein; Provisional
Probab=22.49 E-value=4.8e+02 Score=22.15 Aligned_cols=27 Identities=22% Similarity=0.315 Sum_probs=18.3
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhccCCC
Q 025692 221 GNFINTVQTLMTKSRFKAKMKKSKSKP 247 (249)
Q Consensus 221 GNf~TT~~vv~~K~~~~~~~~~~~~~~ 247 (249)
.||+-.+.++.-=..-..|.|.+|+++
T Consensus 92 SNF~p~il~~~L~~Wi~~kl~~~~~~~ 118 (120)
T PRK11056 92 SNFFPAVLSVILVFWIGRKLRNRKKKV 118 (120)
T ss_pred cchHHHHHHHHHHHHHHHHHhcccccc
Confidence 488887777766666666666666543
Done!