Query 025693
Match_columns 249
No_of_seqs 151 out of 1128
Neff 3.6
Searched_HMMs 46136
Date Fri Mar 29 08:30:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025693.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025693hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2881 Predicted membrane pro 99.9 1.4E-25 3E-30 204.9 6.8 103 136-248 63-165 (294)
2 PF01169 UPF0016: Uncharacteri 99.9 8E-24 1.7E-28 160.8 5.7 76 142-227 1-78 (78)
3 COG2119 Predicted membrane pro 99.9 6.5E-22 1.4E-26 172.8 12.0 124 95-236 63-187 (190)
4 COG2119 Predicted membrane pro 99.8 2E-21 4.4E-26 169.7 9.0 90 140-239 2-91 (190)
5 KOG2881 Predicted membrane pro 99.7 6.7E-18 1.4E-22 154.7 5.5 87 139-235 206-292 (294)
6 TIGR02840 spore_YtaF putative 96.8 0.0029 6.4E-08 55.7 6.0 51 180-240 38-88 (206)
7 COG4280 Predicted membrane pro 96.2 0.024 5.2E-07 51.7 8.1 64 161-235 21-86 (236)
8 PRK11469 hypothetical protein; 96.0 0.008 1.7E-07 52.5 4.0 47 183-240 48-94 (188)
9 COG1971 Predicted membrane pro 93.3 0.078 1.7E-06 47.3 3.2 51 182-243 47-97 (190)
10 PF03596 Cad: Cadmium resistan 92.5 0.44 9.5E-06 42.3 6.8 55 170-235 24-78 (191)
11 COG4300 CadD Predicted permeas 90.6 1.6 3.4E-05 39.6 8.2 81 156-247 18-101 (205)
12 PF01810 LysE: LysE type trans 88.6 1.3 2.8E-05 36.9 5.9 72 160-239 12-86 (191)
13 TIGR00779 cad cadmium resistan 86.5 1.9 4.2E-05 38.6 6.0 55 168-233 21-75 (193)
14 PRK10229 threonine efflux syst 84.3 4.9 0.00011 34.3 7.4 76 151-235 16-94 (206)
15 TIGR00948 2a75 L-lysine export 82.9 3.7 8E-05 34.3 5.9 67 162-236 12-79 (177)
16 PF01810 LysE: LysE type trans 81.2 5.8 0.00013 33.0 6.5 21 214-234 171-191 (191)
17 COG1280 RhtB Putative threonin 79.6 5.8 0.00013 34.6 6.2 83 143-236 10-96 (208)
18 TIGR00949 2A76 The Resistance 77.5 4.2 9.1E-05 33.9 4.5 65 161-234 8-76 (185)
19 PRK10958 leucine export protei 74.6 6.1 0.00013 34.4 4.9 74 153-236 23-100 (212)
20 PF03741 TerC: Integral membra 73.4 12 0.00025 32.8 6.3 68 155-235 12-82 (183)
21 PRK10995 inner membrane protei 71.7 7.6 0.00016 34.5 4.9 23 214-236 75-97 (221)
22 PRK10520 rhtB homoserine/homos 71.4 19 0.0004 30.8 7.1 77 149-234 15-94 (205)
23 COG1971 Predicted membrane pro 69.3 9.9 0.00022 34.2 5.1 43 183-236 147-189 (190)
24 TIGR03716 R_switched_YkoY inte 67.1 15 0.00032 33.2 5.8 74 150-236 100-176 (215)
25 TIGR03716 R_switched_YkoY inte 67.0 9.8 0.00021 34.4 4.6 66 155-234 9-77 (215)
26 PF03741 TerC: Integral membra 65.8 10 0.00022 33.1 4.4 75 141-233 104-183 (183)
27 PRK09304 arginine exporter pro 63.8 18 0.00039 31.3 5.5 65 163-235 27-92 (207)
28 COG0861 TerC Membrane protein 62.3 21 0.00045 33.1 6.0 79 140-236 131-214 (254)
29 TIGR03717 R_switched_YjbE inte 62.1 22 0.00047 30.9 5.7 64 155-233 14-81 (176)
30 PRK10323 cysteine/O-acetylseri 61.8 18 0.00039 31.0 5.1 70 157-234 22-94 (195)
31 TIGR03718 R_switched_Alx integ 61.2 26 0.00057 33.4 6.5 75 147-234 193-270 (302)
32 PF01914 MarC: MarC family int 55.3 36 0.00079 30.0 6.0 75 155-236 123-200 (203)
33 TIGR03718 R_switched_Alx integ 54.6 20 0.00043 34.2 4.6 77 144-233 63-147 (302)
34 PRK11469 hypothetical protein; 54.5 13 0.00028 32.6 3.1 44 181-235 143-186 (188)
35 PRK11111 hypothetical protein; 51.9 32 0.0007 30.8 5.2 31 206-236 176-206 (214)
36 PRK10995 inner membrane protei 50.3 40 0.00087 30.0 5.5 29 208-236 186-214 (221)
37 TIGR00145 FTR1 family protein. 49.9 20 0.00044 33.5 3.8 61 171-236 38-100 (283)
38 TIGR00997 ispZ intracellular s 49.6 43 0.00093 29.6 5.5 46 175-232 22-67 (178)
39 PRK10019 nickel/cobalt efflux 49.3 27 0.00059 32.8 4.5 25 213-237 88-112 (279)
40 TIGR02230 ATPase_gene1 F0F1-AT 47.7 48 0.001 27.0 5.1 24 180-206 50-73 (100)
41 TIGR03717 R_switched_YjbE inte 47.0 42 0.00091 29.2 5.0 68 152-232 103-174 (176)
42 PF02659 DUF204: Domain of unk 46.9 35 0.00075 24.5 3.8 35 182-227 33-67 (67)
43 PRK10621 hypothetical protein; 42.8 53 0.0011 29.4 5.2 47 180-236 210-256 (266)
44 PF01914 MarC: MarC family int 42.7 41 0.0009 29.6 4.4 26 212-237 69-94 (203)
45 PF02535 Zip: ZIP Zinc transpo 41.4 1E+02 0.0022 27.4 6.7 83 140-231 202-285 (317)
46 PF03239 FTR1: Iron permease F 40.1 58 0.0013 30.3 5.1 60 171-234 35-98 (306)
47 PRK00259 intracellular septati 39.7 78 0.0017 27.8 5.6 46 175-232 22-67 (179)
48 COG0730 Predicted permeases [G 38.2 1.2E+02 0.0025 26.7 6.6 55 171-235 68-122 (258)
49 TIGR00427 membrane protein, Ma 37.8 70 0.0015 28.3 5.1 26 209-234 175-200 (201)
50 COG4280 Predicted membrane pro 37.0 31 0.00067 32.0 2.8 67 158-235 133-200 (236)
51 PRK15071 lipopolysaccharide AB 36.8 2E+02 0.0043 26.6 8.0 76 139-233 272-354 (356)
52 PF11139 DUF2910: Protein of u 36.7 1.9E+02 0.004 25.1 7.5 59 172-234 32-90 (214)
53 PF06379 RhaT: L-rhamnose-prot 36.1 61 0.0013 31.7 4.7 83 140-234 71-154 (344)
54 TIGR00427 membrane protein, Ma 35.7 69 0.0015 28.3 4.7 54 172-234 41-94 (201)
55 COG2917 Intracellular septatio 34.7 61 0.0013 29.2 4.1 47 175-233 22-68 (180)
56 PF12811 BaxI_1: Bax inhibitor 34.4 3E+02 0.0065 26.1 8.9 60 140-202 93-169 (274)
57 PF03739 YjgP_YjgQ: Predicted 32.1 1.2E+02 0.0026 27.4 5.8 76 138-232 272-353 (354)
58 COG0730 Predicted permeases [G 31.3 82 0.0018 27.7 4.5 45 181-235 211-255 (258)
59 PRK09304 arginine exporter pro 30.2 3.6E+02 0.0077 23.2 9.1 24 213-236 181-204 (207)
60 PF03239 FTR1: Iron permease F 29.2 1.4E+02 0.0031 27.7 5.9 65 137-207 131-197 (306)
61 PF01925 TauE: Sulfite exporte 28.5 93 0.002 26.5 4.2 45 175-229 195-239 (240)
62 PF05360 YiaAB: yiaA/B two hel 28.5 1.6E+02 0.0035 21.0 4.8 48 177-234 3-50 (53)
63 COG2215 ABC-type uncharacteriz 28.2 1.4E+02 0.0031 28.8 5.7 23 214-236 132-154 (303)
64 PF06724 DUF1206: Domain of Un 27.0 82 0.0018 23.1 3.1 23 215-237 49-71 (73)
65 PRK11111 hypothetical protein; 27.0 44 0.00096 29.9 2.0 52 173-233 45-96 (214)
66 TIGR00949 2A76 The Resistance 26.5 2E+02 0.0044 23.8 5.8 18 213-230 168-185 (185)
67 KOG3415 Putative Rab5-interact 26.4 1.5E+02 0.0032 25.3 4.9 17 152-168 33-49 (129)
68 PRK10621 hypothetical protein; 26.3 1.3E+02 0.0028 26.9 4.9 51 173-233 74-124 (266)
69 PF11364 DUF3165: Protein of u 26.2 3.1E+02 0.0066 21.9 6.3 49 174-239 30-78 (81)
70 PRK10019 nickel/cobalt efflux 25.8 3.3E+02 0.0072 25.7 7.6 74 146-236 197-275 (279)
71 PF01925 TauE: Sulfite exporte 25.8 1E+02 0.0022 26.3 3.9 48 178-235 65-112 (240)
72 COG2095 MarC Multiple antibiot 25.7 1.9E+02 0.0042 25.9 5.8 75 155-236 122-197 (203)
73 PRK00293 dipZ thiol:disulfide 25.2 1.1E+02 0.0024 31.0 4.7 47 175-231 216-262 (571)
74 PRK11195 lysophospholipid tran 25.2 2.9E+02 0.0063 25.4 7.1 62 142-207 5-69 (393)
75 PF04279 IspA: Intracellular s 24.5 2E+02 0.0044 24.9 5.6 44 178-233 25-68 (176)
76 PRK04201 zinc transporter ZupT 24.2 4E+02 0.0087 24.1 7.7 84 143-233 152-235 (265)
77 COG2095 MarC Multiple antibiot 24.1 1.6E+02 0.0035 26.4 5.0 60 172-241 41-101 (203)
78 PF02683 DsbD: Cytochrome C bi 23.6 1.8E+02 0.0038 25.1 5.1 47 174-232 47-93 (211)
79 PF14007 YtpI: YtpI-like prote 23.0 2.1E+02 0.0045 22.9 4.9 22 215-236 58-79 (89)
80 PRK01637 hypothetical protein; 22.5 1.8E+02 0.004 26.4 5.2 26 171-196 201-226 (286)
81 COG0795 Predicted permeases [G 22.4 2.5E+02 0.0054 26.0 6.1 79 139-233 278-360 (364)
82 PF04306 DUF456: Protein of un 21.7 3.6E+02 0.0078 22.6 6.4 89 139-233 30-124 (140)
83 PF14143 YrhC: YrhC-like prote 21.5 59 0.0013 25.1 1.5 38 198-236 25-63 (72)
84 COG1280 RhtB Putative threonin 21.2 2E+02 0.0044 25.0 5.0 21 213-233 186-206 (208)
85 COG1238 Predicted membrane pro 21.2 4.7E+02 0.01 22.8 7.1 92 139-234 20-111 (161)
86 PRK10958 leucine export protei 20.9 3.8E+02 0.0083 23.2 6.7 19 215-233 192-210 (212)
87 COG1279 Lysine efflux permease 20.9 2.5E+02 0.0053 25.7 5.5 68 158-233 129-201 (202)
88 PRK15120 lipopolysaccharide AB 20.8 3.6E+02 0.0078 25.1 6.8 63 160-232 281-347 (366)
89 TIGR02840 spore_YtaF putative 20.7 1.9E+02 0.0042 25.5 4.8 38 181-229 166-204 (206)
90 PF13386 DsbD_2: Cytochrome C 20.2 1.5E+02 0.0033 25.3 4.0 42 173-229 158-199 (199)
91 KOG1397 Ca2+/H+ antiporter VCX 20.1 1.7E+02 0.0036 29.7 4.6 19 154-172 136-154 (441)
No 1
>KOG2881 consensus Predicted membrane protein [Function unknown]
Probab=99.92 E-value=1.4e-25 Score=204.87 Aligned_cols=103 Identities=38% Similarity=0.639 Sum_probs=95.2
Q ss_pred cchhHHHHHHHHHHHHhhcCcHHHHHHHHHHhccCCceeehHHHHHHHHHHHHHHHHhchhhhccccCCccccCCCchhH
Q 025693 136 GDISRGFASAFLLIFFSELGDKTFFIAALLAARNSAATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPID 215 (249)
Q Consensus 136 ~~~~~aFltAFllIFLAElGDKTQLaTalLAaR~~~~~VflGa~lAL~l~T~LsVl~G~~l~~i~~~LP~r~~~~~l~il 215 (249)
+++..+|..+|.+||++|+||||||++++|||||++..||.|++.||++||++++++|+.. +..+|+++ +
T Consensus 63 ~s~~~~f~~SiSmI~vsEiGDKTFfiAAlmAmr~~R~~Vf~Ga~~AL~lMTiLS~~lG~aa---p~lipr~~-------T 132 (294)
T KOG2881|consen 63 SSFLQGFTASISMIFVSEIGDKTFFIAALMAMRYPRLTVFSGAMSALALMTILSVLLGWAA---PNLIPRKY-------T 132 (294)
T ss_pred HHHHHHHHHhhheeeeeeccchHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHhh---hhhchHHH-------H
Confidence 5688999999999999999999999999999999999999999999999999999999865 57899998 8
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCCchhhhhc
Q 025693 216 DIAAVCLLVYFGVSTLLDAASTDGLKSEDEQKE 248 (249)
Q Consensus 216 ~~iaaiLFl~FGl~tL~ea~~~~~~~~eeE~~e 248 (249)
+++++++|++||+|||+|++++.+.+.+||++|
T Consensus 133 ~~~~t~LF~iFGlkmL~eg~~~~~~~~~eE~eE 165 (294)
T KOG2881|consen 133 YYLATALFLIFGLKMLKEGWEMSPSEGQEELEE 165 (294)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCccchhhHHH
Confidence 999999999999999999999776666666665
No 2
>PF01169 UPF0016: Uncharacterized protein family UPF0016; InterPro: IPR001727 A number of uncharacterised proteins share regions of similarities. These include, Saccharomyces cerevisiae (Baker's yeast) hypothetical protein YBR187w. Schizosaccharomyces pombe (Fission yeast) hypothetical protein SpAC17G8.08c. Mus musculus (Mouse) protein pFT27. Synechocystis sp. (strain PCC 6803) hypothetical protein sll0615. These are hydrophobic proteins of 200 to 320 amino acids that seem to contain six or seven transmembrane domains.; GO: 0016020 membrane
Probab=99.89 E-value=8e-24 Score=160.80 Aligned_cols=76 Identities=43% Similarity=0.603 Sum_probs=72.5
Q ss_pred HHHHHHHHHHhhcCcHHHHHHHHHHhcc--CCceeehHHHHHHHHHHHHHHHHhchhhhccccCCccccCCCchhHHHHH
Q 025693 142 FASAFLLIFFSELGDKTFFIAALLAARN--SAATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAA 219 (249)
Q Consensus 142 FltAFllIFLAElGDKTQLaTalLAaR~--~~~~VflGa~lAL~l~T~LsVl~G~~l~~i~~~LP~r~~~~~l~il~~ia 219 (249)
|+++|.++|++|+|||||++|+.||+|| +||.|++|+++|+++++++++++|+++ .+++|+++ +++++
T Consensus 1 F~~sf~~iflaE~GDKTQl~t~~La~~~~~~~~~V~~G~~~al~~~~~lav~~G~~l---~~~ip~~~-------i~~~~ 70 (78)
T PF01169_consen 1 FLTSFLLIFLAELGDKTQLATIALAARYPRNPWPVFAGATLALALATGLAVLLGSWL---ASRIPERY-------IKWVA 70 (78)
T ss_pred CHHHHHHHHHHHhCcHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHH---HHHCCHHH-------HHHHH
Confidence 6789999999999999999999999999 789999999999999999999999976 68999998 99999
Q ss_pred HHHHHHHH
Q 025693 220 VCLLVYFG 227 (249)
Q Consensus 220 aiLFl~FG 227 (249)
+++|++||
T Consensus 71 ~~lFl~fG 78 (78)
T PF01169_consen 71 GALFLLFG 78 (78)
T ss_pred HHHHHHHC
Confidence 99999997
No 3
>COG2119 Predicted membrane protein [Function unknown]
Probab=99.87 E-value=6.5e-22 Score=172.79 Aligned_cols=124 Identities=24% Similarity=0.284 Sum_probs=98.7
Q ss_pred chhhHHHHHHHHHhhhccchhhhhcccccCCCCCcCCCCCccchhHHHHHHHHHHHHhhcCcHHHHHHHHHHhccCC-ce
Q 025693 95 DSGLIKFVMFFGLLTLQGSQTAVAAVDFASGLQSFPFLGDLGDISRGFASAFLLIFFSELGDKTFFIAALLAARNSA-AT 173 (249)
Q Consensus 95 ~~~~~~~~~~~~~l~l~~~~~~~~~~d~~~~~~~~~~~g~~~~~~~aFltAFllIFLAElGDKTQLaTalLAaR~~~-~~ 173 (249)
+...+++.....|+.....+.-.+..| .++..+ .+-+..|+++|+++|++|||||||++|++||++|+. |.
T Consensus 63 ~~~~~~~~~~~~Flafav~~l~edk~~---~~e~~~-----~~~~~~f~~tfi~~FlaE~GDKTQiATIaLaA~~~~~~~ 134 (190)
T COG2119 63 PERPLAWASGVLFLAFAVWMLIEDKED---DEEAQA-----ASPRGVFVTTFITFFLAELGDKTQIATIALAADYHSPWA 134 (190)
T ss_pred chhHHHHHHHHHHHHHHHHHhcccccc---cccccc-----cccccHHHHHHHHHHHHHhccHHHHHHHHHhhcCCCcee
Confidence 344555656666666666644333333 222211 122569999999999999999999999999999885 99
Q ss_pred eehHHHHHHHHHHHHHHHHhchhhhccccCCccccCCCchhHHHHHHHHHHHHHHHHHHhhhc
Q 025693 174 VFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDAAS 236 (249)
Q Consensus 174 VflGa~lAL~l~T~LsVl~G~~l~~i~~~LP~r~~~~~l~il~~iaaiLFl~FGl~tL~ea~~ 236 (249)
||+|+.+|++++++++|++|+++ ++++|.|. ++.+++++|++||+..+|+...
T Consensus 135 V~~Gt~lg~~l~s~laVl~G~~i---a~ki~~r~-------l~~~aallFl~fal~~~~~~~~ 187 (190)
T COG2119 135 VFAGTTLGMILASVLAVLLGKLI---AGKLPERL-------LRFIAALLFLIFALVLLWQVFE 187 (190)
T ss_pred eehhhHHHHHHHHHHHHHHHHHH---HccCCHHH-------HHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999965 69999998 8999999999999999998654
No 4
>COG2119 Predicted membrane protein [Function unknown]
Probab=99.85 E-value=2e-21 Score=169.70 Aligned_cols=90 Identities=34% Similarity=0.455 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHhhcCcHHHHHHHHHHhccCCceeehHHHHHHHHHHHHHHHHhchhhhccccCCccccCCCchhHHHHH
Q 025693 140 RGFASAFLLIFFSELGDKTFFIAALLAARNSAATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAA 219 (249)
Q Consensus 140 ~aFltAFllIFLAElGDKTQLaTalLAaR~~~~~VflGa~lAL~l~T~LsVl~G~~l~~i~~~LP~r~~~~~l~il~~ia 219 (249)
++++.+.++|+++|+|||||+++++||+||+||+||.|+.+|++.||.+++++|++. +..+|+++ .+|++
T Consensus 2 ~~~~~s~~~v~laEiGDKT~lia~llA~r~~~~~v~~g~~~a~~~m~~la~~vG~~~---~~~~~~~~-------~~~~~ 71 (190)
T COG2119 2 EALLVSLLMVALAEIGDKTQLIAMLLAMRYRRWPVFAGIAIALFAMHALAVLVGHAA---ASLLPERP-------LAWAS 71 (190)
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHH---hccCchhH-------HHHHH
Confidence 578899999999999999999999999999999999999999999999999999865 67889998 89999
Q ss_pred HHHHHHHHHHHHHhhhcCCC
Q 025693 220 VCLLVYFGVSTLLDAASTDG 239 (249)
Q Consensus 220 aiLFl~FGl~tL~ea~~~~~ 239 (249)
+.+|++||+|+++|+-.+++
T Consensus 72 ~~~Flafav~~l~edk~~~~ 91 (190)
T COG2119 72 GVLFLAFAVWMLIEDKEDDE 91 (190)
T ss_pred HHHHHHHHHHHhcccccccc
Confidence 99999999999998655444
No 5
>KOG2881 consensus Predicted membrane protein [Function unknown]
Probab=99.71 E-value=6.7e-18 Score=154.73 Aligned_cols=87 Identities=26% Similarity=0.345 Sum_probs=81.6
Q ss_pred hHHHHHHHHHHHHhhcCcHHHHHHHHHHhccCCceeehHHHHHHHHHHHHHHHHhchhhhccccCCccccCCCchhHHHH
Q 025693 139 SRGFASAFLLIFFSELGDKTFFIAALLAARNSAATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIA 218 (249)
Q Consensus 139 ~~aFltAFllIFLAElGDKTQLaTalLAaR~~~~~VflGa~lAL~l~T~LsVl~G~~l~~i~~~LP~r~~~~~l~il~~i 218 (249)
...|+.+|.++|++|||||+|++|++||++.+++.|++|+.+|+.+||+++|+.|+.+ +++|+.|. +.++
T Consensus 206 spifikaFsltF~aEwGDRSQlaTI~laA~en~~gV~~G~~iGH~lCT~lAVigGk~l---AskIS~rt-------Vt~~ 275 (294)
T KOG2881|consen 206 SPIFIKAFSLTFLAEWGDRSQLATIALAADENPLGVAIGAIIGHALCTGLAVIGGKYL---ASKISVRT-------VTLI 275 (294)
T ss_pred cHHHHHHHHHHHHHHhccHHHHHHHHHhcccCcceeeeccHHHHHHHHHHHHhhhHHH---hhhheeEE-------EEEe
Confidence 4699999999999999999999999999999999999999999999999999999954 78999987 8999
Q ss_pred HHHHHHHHHHHHHHhhh
Q 025693 219 AVCLLVYFGVSTLLDAA 235 (249)
Q Consensus 219 aaiLFl~FGl~tL~ea~ 235 (249)
++++|++||+..++.+.
T Consensus 276 ggi~Fi~Fgl~~i~~~~ 292 (294)
T KOG2881|consen 276 GGILFIIFGLVYIFQGF 292 (294)
T ss_pred cchhHHHHHHHHHhcCC
Confidence 99999999999988653
No 6
>TIGR02840 spore_YtaF putative sporulation protein YtaF. This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein.
Probab=96.78 E-value=0.0029 Score=55.65 Aligned_cols=51 Identities=20% Similarity=0.340 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHhchhhhccccCCccccCCCchhHHHHHHHHHHHHHHHHHHhhhcCCCC
Q 025693 180 GALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDAASTDGL 240 (249)
Q Consensus 180 lAL~l~T~LsVl~G~~l~~i~~~LP~r~~~~~l~il~~iaaiLFl~FGl~tL~ea~~~~~~ 240 (249)
....+|+.++.++|+.+ .+++|.++ .+|+++++++++|+||++|++..+++
T Consensus 38 ~~~~~~~~lg~~~G~~~---~~~i~~~~-------~~~ig~~iLi~iG~~mi~~~~~~~~~ 88 (206)
T TIGR02840 38 VISGLFIFISMLLGKFL---AKFLPPKV-------TEILGAFILIAIGIWIIYNAFRPKKE 88 (206)
T ss_pred HHHHHHHHHHHHHHHHH---HHHhchhh-------HHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 33458899999999876 57888877 79999999999999999999875543
No 7
>COG4280 Predicted membrane protein [Function unknown]
Probab=96.19 E-value=0.024 Score=51.68 Aligned_cols=64 Identities=22% Similarity=0.334 Sum_probs=53.6
Q ss_pred HHHHHHhc--cCCceeehHHHHHHHHHHHHHHHHhchhhhccccCCccccCCCchhHHHHHHHHHHHHHHHHHHhhh
Q 025693 161 IAALLAAR--NSAATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDAA 235 (249)
Q Consensus 161 aTalLAaR--~~~~~VflGa~lAL~l~T~LsVl~G~~l~~i~~~LP~r~~~~~l~il~~iaaiLFl~FGl~tL~ea~ 235 (249)
.++..+-. ++...-+.|+.+|+++.-.++.++|+.+ ..+|-.+ +++++|++.+.||..-++.+.
T Consensus 21 ~aIa~avg~~~~wr~al~ga~lglalvl~l~lvlGk~L----~lvPln~-------lqiv~gvLLllFG~rw~Rsav 86 (236)
T COG4280 21 GAIAAAVGNIYKWRLALIGAVLGLALVLILTLVLGKLL----YLVPLNY-------LQIVSGVLLLLFGYRWIRSAV 86 (236)
T ss_pred HHHHHhhhhhccccHHHHHHHHHHHHHHHHHHHHccce----eeeechH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 34444433 5566889999999999999999999987 4789888 899999999999999988873
No 8
>PRK11469 hypothetical protein; Provisional
Probab=95.97 E-value=0.008 Score=52.47 Aligned_cols=47 Identities=13% Similarity=0.196 Sum_probs=38.2
Q ss_pred HHHHHHHHHHhchhhhccccCCccccCCCchhHHHHHHHHHHHHHHHHHHhhhcCCCC
Q 025693 183 AAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDAASTDGL 240 (249)
Q Consensus 183 ~l~T~LsVl~G~~l~~i~~~LP~r~~~~~l~il~~iaaiLFl~FGl~tL~ea~~~~~~ 240 (249)
.+|+.++-.+|+.+ .+++|. + .+|++++++++.|+||++|+++.+++
T Consensus 48 ~~m~~~g~~~G~~l---~~~i~~-~-------~~~i~~~lL~~lG~~mi~e~~~~~~~ 94 (188)
T PRK11469 48 TLTPLIGWGMGMLA---SRFVLE-W-------NHWIAFVLLIFLGGRMIIEGFRGADD 94 (188)
T ss_pred HHHHHHHHHHHHHH---HHHHHH-H-------HHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 67788888889876 356654 4 79999999999999999999875544
No 9
>COG1971 Predicted membrane protein [Function unknown]
Probab=93.31 E-value=0.078 Score=47.34 Aligned_cols=51 Identities=14% Similarity=0.307 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHhchhhhccccCCccccCCCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCch
Q 025693 182 LAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDAASTDGLKSE 243 (249)
Q Consensus 182 L~l~T~LsVl~G~~l~~i~~~LP~r~~~~~l~il~~iaaiLFl~FGl~tL~ea~~~~~~~~e 243 (249)
.++|-.++-+.|+.+ ++++ ..+ .+|++++++++.|+||++|+++.++++.+
T Consensus 47 ~~i~pliG~~~g~~~---s~~i-~~~-------~~wigf~lL~~lG~~mI~e~f~~~~~~~~ 97 (190)
T COG1971 47 QAIMPLIGWFIGKFL---STFI-AEW-------AHWIGFVLLIILGLKMIIEGFKNEEDEFV 97 (190)
T ss_pred HHHHHHHHHHHHHHH---HHHH-HHH-------HHHHHHHHHHHHHHHHHHHHhchhhcchh
Confidence 345666777777655 2222 333 79999999999999999999997765544
No 10
>PF03596 Cad: Cadmium resistance transporter; InterPro: IPR004676 These proteins are members of the Cadmium Resistance (CadD) Family. To date, this family of proteins has only been found in Gram-positive bacteria. The CadD family includes two close orthologues in two Staphylococcus species that have been reported to function in cadmium resistance, and another staphylococcal protein that has been reported to possibly function in quaternary ammonium ion export.
Probab=92.51 E-value=0.44 Score=42.28 Aligned_cols=55 Identities=11% Similarity=0.214 Sum_probs=42.3
Q ss_pred CCceeehHHHHHHHHHHHHHHHHhchhhhccccCCccccCCCchhHHHHHHHHHHHHHHHHHHhhh
Q 025693 170 SAATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDAA 235 (249)
Q Consensus 170 ~~~~VflGa~lAL~l~T~LsVl~G~~l~~i~~~LP~r~~~~~l~il~~iaaiLFl~FGl~tL~ea~ 235 (249)
+++.|.+|-.+|..+.-++|.+++..+ ..+|+.| +--.-|++=+++|++.++.+.
T Consensus 24 ~~~~I~~GqylG~~~Lv~~Sl~~~~~l----~~ip~~w-------iLGlLGliPI~lGi~~l~~~~ 78 (191)
T PF03596_consen 24 RRRQIVIGQYLGFTILVLASLLGAFGL----LFIPPEW-------ILGLLGLIPIYLGIKALFSGE 78 (191)
T ss_pred ChhhhhhhHHHHHHHHHHHHHHHHHHH----HhCCHHH-------HHHHHHHHHHHHHHHHHHcCC
Confidence 368999999999988888888887655 4788777 433456777999999887543
No 11
>COG4300 CadD Predicted permease, cadmium resistance protein [Inorganic ion transport and metabolism]
Probab=90.58 E-value=1.6 Score=39.57 Aligned_cols=81 Identities=14% Similarity=0.235 Sum_probs=52.1
Q ss_pred cHHHHHHHHHHhc---cCCceeehHHHHHHHHHHHHHHHHhchhhhccccCCccccCCCchhHHHHHHHHHHHHHHHHHH
Q 025693 156 DKTFFIAALLAAR---NSAATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLL 232 (249)
Q Consensus 156 DKTQLaTalLAaR---~~~~~VflGa~lAL~l~T~LsVl~G~~l~~i~~~LP~r~~~~~l~il~~iaaiLFl~FGl~tL~ 232 (249)
|--=+..+.+|.+ ...+.+++|=.+|.+..-+.+.++.- +.+.+|+++ +--.-|++=++.|+|.++
T Consensus 18 D~lIiL~l~Far~~~~k~~~~I~~GQyLGs~~lilaSL~~a~----v~~fvp~e~-------I~glLGLIPi~LGik~l~ 86 (205)
T COG4300 18 DLLIILLLFFARRKSRKDILHIYLGQYLGSVILILASLLFAF----VLNFVPEEW-------ILGLLGLIPIYLGIKVLI 86 (205)
T ss_pred HHHHHHHHHHHHhcccCcEEEEeHHHHHhHHHHHHHHHHHHH----HHhhCcHHH-------HHHHHhHHHHHHhhHHhh
Confidence 4444445555554 33589999988776655555444432 236789888 444557777999999999
Q ss_pred hhhcCCCCCchhhhh
Q 025693 233 DAASTDGLKSEDEQK 247 (249)
Q Consensus 233 ea~~~~~~~~eeE~~ 247 (249)
.+..++|++++||.+
T Consensus 87 ~~d~d~e~~~~e~L~ 101 (205)
T COG4300 87 LGDDDGEEEAKEELA 101 (205)
T ss_pred cccCcCchhhhHHHH
Confidence 877755555555544
No 12
>PF01810 LysE: LysE type translocator; InterPro: IPR001123 Lysine exporter protein is involved in the efflux of excess L-lysine as a control for intracellular levels of L-lysine. A number of proteins belong to this family. These include the chemotactic transduction protein from Pseudomonas aeruginosa, the threonine efflux protein and a number of uncharacterised proteins from a variety of sources.; GO: 0006865 amino acid transport, 0016020 membrane
Probab=88.62 E-value=1.3 Score=36.90 Aligned_cols=72 Identities=15% Similarity=0.121 Sum_probs=50.8
Q ss_pred HHHHHHHhccCC---ceeehHHHHHHHHHHHHHHHHhchhhhccccCCccccCCCchhHHHHHHHHHHHHHHHHHHhhhc
Q 025693 160 FIAALLAARNSA---ATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDAAS 236 (249)
Q Consensus 160 LaTalLAaR~~~---~~VflGa~lAL~l~T~LsVl~G~~l~~i~~~LP~r~~~~~l~il~~iaaiLFl~FGl~tL~ea~~ 236 (249)
+..+-.++++++ +.+.+|...+-++...++++....+ .+..|.- ..++++++++.++++|+.+++++.+
T Consensus 12 ~~~i~~~~~~G~~~~~~~~~G~~~~~~i~~~~~~~g~~~l---~~~~~~~-----~~~l~~~G~~~L~~lg~~~~~~~~~ 83 (191)
T PF01810_consen 12 LLVISNGLRKGFKAGLPVALGAALGDLIYILLAVFGLSAL---LKSSPWL-----FMILKLLGALYLLYLGYKLLRSKFS 83 (191)
T ss_pred HHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhChHH-----HHHHHHHHHHHHHHHHHHHHhcccC
Confidence 445556667664 5778888888888877777666544 2223322 2458999999999999999998766
Q ss_pred CCC
Q 025693 237 TDG 239 (249)
Q Consensus 237 ~~~ 239 (249)
.+.
T Consensus 84 ~~~ 86 (191)
T PF01810_consen 84 SKS 86 (191)
T ss_pred cch
Confidence 554
No 13
>TIGR00779 cad cadmium resistance transporter (or sequestration) family protein. These proteins are members of the Cadmium Resistance (CadD) Family (TC 2.A.77). To date, this family of proteins has only been found in Gram-positive bacteria. The CadD family includes several closely related Staphylococcal proteins reported to function in cadmium resistance. Members are predicted to span the membrane five times; the mechanism of resistance is believed to be export but has also been suggested to be binding and sequestration in the membrane. Closely related but outside the scope of this model is another staphylococcal protein that has been reported to possibly function in quaternary ammonium ion export. Still more distant are other members of the broader LysE family (see Vrljic. et al, PubMed:10943564).
Probab=86.50 E-value=1.9 Score=38.57 Aligned_cols=55 Identities=13% Similarity=0.317 Sum_probs=40.0
Q ss_pred ccCCceeehHHHHHHHHHHHHHHHHhchhhhccccCCccccCCCchhHHHHHHHHHHHHHHHHHHh
Q 025693 168 RNSAATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLD 233 (249)
Q Consensus 168 R~~~~~VflGa~lAL~l~T~LsVl~G~~l~~i~~~LP~r~~~~~l~il~~iaaiLFl~FGl~tL~e 233 (249)
+++++.|.+|-.+|..+.-++|++.+..+ ..+|+.| +--.-|++=+++|+|-+++
T Consensus 21 ~~~~~~IviGqylGf~~Lv~~Sl~~a~gl----~~iP~~w-------IlGlLGliPI~lGi~~l~~ 75 (193)
T TIGR00779 21 RKEYKDIYIGQYLGSIILILVSLLLAFGV----NLIPEKW-------VLGLLGLIPIYLGIKVAIK 75 (193)
T ss_pred CCCeeEEEEeHHHHHHHHHHHHHHHHHHH----HhCCHHH-------HHhHHhHHHHHHHHHHHhc
Confidence 56789999999999887777777755433 4788877 4233455559999998886
No 14
>PRK10229 threonine efflux system; Provisional
Probab=84.35 E-value=4.9 Score=34.27 Aligned_cols=76 Identities=16% Similarity=0.145 Sum_probs=50.6
Q ss_pred HhhcCcHHHHHHHHHHhccCC---ceeehHHHHHHHHHHHHHHHHhchhhhccccCCccccCCCchhHHHHHHHHHHHHH
Q 025693 151 FSELGDKTFFIAALLAARNSA---ATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFG 227 (249)
Q Consensus 151 LAElGDKTQLaTalLAaR~~~---~~VflGa~lAL~l~T~LsVl~G~~l~~i~~~LP~r~~~~~l~il~~iaaiLFl~FG 227 (249)
..--|- ..+.++--+.++++ ....+|...|.++..+++++.-..+ -...|.-. .++++++++..+++|
T Consensus 16 ~~sPGP-~~~~vi~~~~~~G~~~~~~~~~G~~~g~~i~~~l~~~Gl~~l---l~~~p~~~-----~~l~~~Ga~yLlylg 86 (206)
T PRK10229 16 LMSPGP-DFFFVSQTAVSRSRKEAMMGVLGITCGVMVWAGVALLGLHLI---LEKMAWLH-----TIIMVGGGLYLCWMG 86 (206)
T ss_pred hcCCCc-hhHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhHHHH-----HHHHHHHHHHHHHHH
Confidence 333465 66667777777774 4667888888888766655544333 12334332 357899988889999
Q ss_pred HHHHHhhh
Q 025693 228 VSTLLDAA 235 (249)
Q Consensus 228 l~tL~ea~ 235 (249)
+.+++++.
T Consensus 87 ~~~~~~~~ 94 (206)
T PRK10229 87 YQMLRGAL 94 (206)
T ss_pred HHHHHhcc
Confidence 99998753
No 15
>TIGR00948 2a75 L-lysine exporter.
Probab=82.85 E-value=3.7 Score=34.29 Aligned_cols=67 Identities=10% Similarity=0.024 Sum_probs=44.0
Q ss_pred HHHHHhccCC-ceeehHHHHHHHHHHHHHHHHhchhhhccccCCccccCCCchhHHHHHHHHHHHHHHHHHHhhhc
Q 025693 162 AALLAARNSA-ATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDAAS 236 (249)
Q Consensus 162 TalLAaR~~~-~~VflGa~lAL~l~T~LsVl~G~~l~~i~~~LP~r~~~~~l~il~~iaaiLFl~FGl~tL~ea~~ 236 (249)
++..++++++ +.+.+|..+|.++...++++.-..+ -+..|.-. .++++++++..+++|+.+++.+.+
T Consensus 12 vi~~~~~~~~g~~~~~G~~~g~~i~~~~~~~Gl~~l---l~~~p~~~-----~~l~~~Ga~YLlylg~~~~r~~~~ 79 (177)
T TIGR00948 12 VLRQGIRREHVLLIVALCCICDLVLIAAGVFGVAAL---LAASPILL-----AVLTWGGALFLLWYGFLAAKTAWR 79 (177)
T ss_pred HHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHCHHHH-----HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444555443 4677888888888777666554433 23344333 347899999889999999997643
No 16
>PF01810 LysE: LysE type translocator; InterPro: IPR001123 Lysine exporter protein is involved in the efflux of excess L-lysine as a control for intracellular levels of L-lysine. A number of proteins belong to this family. These include the chemotactic transduction protein from Pseudomonas aeruginosa, the threonine efflux protein and a number of uncharacterised proteins from a variety of sources.; GO: 0006865 amino acid transport, 0016020 membrane
Probab=81.16 E-value=5.8 Score=33.02 Aligned_cols=21 Identities=24% Similarity=0.153 Sum_probs=18.6
Q ss_pred hHHHHHHHHHHHHHHHHHHhh
Q 025693 214 IDDIAAVCLLVYFGVSTLLDA 234 (249)
Q Consensus 214 il~~iaaiLFl~FGl~tL~ea 234 (249)
.++.+++++|++||+++++++
T Consensus 171 ~i~~~~g~~li~~av~l~~~g 191 (191)
T PF01810_consen 171 WINRISGLLLIGFAVYLLYSG 191 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHcC
Confidence 378999999999999999864
No 17
>COG1280 RhtB Putative threonine efflux protein [Amino acid transport and metabolism]
Probab=79.55 E-value=5.8 Score=34.64 Aligned_cols=83 Identities=13% Similarity=0.151 Sum_probs=52.1
Q ss_pred HHHHHHHHHhhcCcHHHHHHHHHHhccCC---ceeehHHHHHHHHHHHHHHHH-hchhhhccccCCccccCCCchhHHHH
Q 025693 143 ASAFLLIFFSELGDKTFFIAALLAARNSA---ATVFAGTFGALAAMTVISVIL-GRTFHYVDEILPFRFGQTDLPIDDIA 218 (249)
Q Consensus 143 ltAFllIFLAElGDKTQLaTalLAaR~~~---~~VflGa~lAL~l~T~LsVl~-G~~l~~i~~~LP~r~~~~~l~il~~i 218 (249)
+.+.....+. -|.-+ +.++.-++++++ +.+-+|..+|.++...++++. +..++ ..|.-+ .+++++
T Consensus 10 ~~~~~~~~~~-PGP~~-~~v~~~~~~~G~~~g~~~~~G~~~G~~v~~~l~~~Gl~all~----~~~~~f-----~~lk~~ 78 (208)
T COG1280 10 LLAALVLAAT-PGPDN-LLVLARSLSRGRRAGLATALGIALGDLVHMLLAALGLAALLA----TSPALF-----TVLKLA 78 (208)
T ss_pred HHHHHHHhcC-CCccH-HHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhHHHH-----HHHHHH
Confidence 3333333333 55433 444556666654 577888888887777666653 34332 223322 358999
Q ss_pred HHHHHHHHHHHHHHhhhc
Q 025693 219 AVCLLVYFGVSTLLDAAS 236 (249)
Q Consensus 219 aaiLFl~FGl~tL~ea~~ 236 (249)
+++-.+++|+.+++....
T Consensus 79 GaaYL~ylg~~~~ra~~~ 96 (208)
T COG1280 79 GAAYLLYLGWKALRAGGA 96 (208)
T ss_pred HHHHHHHHHHHHHhcccc
Confidence 999999999999997743
No 18
>TIGR00949 2A76 The Resistance to Homoserine/Threonine (RhtB) Family protein.
Probab=77.53 E-value=4.2 Score=33.86 Aligned_cols=65 Identities=15% Similarity=0.167 Sum_probs=43.6
Q ss_pred HHHHHHhccCC---ceeehHHHHHHHHHHHHHHH-HhchhhhccccCCccccCCCchhHHHHHHHHHHHHHHHHHHhh
Q 025693 161 IAALLAARNSA---ATVFAGTFGALAAMTVISVI-LGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDA 234 (249)
Q Consensus 161 aTalLAaR~~~---~~VflGa~lAL~l~T~LsVl-~G~~l~~i~~~LP~r~~~~~l~il~~iaaiLFl~FGl~tL~ea 234 (249)
.++.-++++++ +.+.+|..+|.++...++++ ++..+ +..|.-. .++++++++..+++|+.++++.
T Consensus 8 ~~~~~~~~~G~~~~~~~~~G~~~g~~~~~~~~~~Gl~~l~----~~~~~~~-----~~l~~~Ga~yLl~lg~~~~~~~ 76 (185)
T TIGR00949 8 VVMQTSLSSGRRAGVLTILGIALGDAIWIVLSLLGLAVLI----SKSVILF-----TVIKWLGGAYLIYLGIKMLRKK 76 (185)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhHHHH-----HHHHHHHHHHHHHHHHHHHHcc
Confidence 34444555543 57788888888888777766 33333 3344322 3478999999999999999854
No 19
>PRK10958 leucine export protein LeuE; Provisional
Probab=74.63 E-value=6.1 Score=34.42 Aligned_cols=74 Identities=20% Similarity=0.283 Sum_probs=46.2
Q ss_pred hcCcHHHHHHHHHHhccCC---ceeehHHHHHHHHHHHHHHH-HhchhhhccccCCccccCCCchhHHHHHHHHHHHHHH
Q 025693 153 ELGDKTFFIAALLAARNSA---ATVFAGTFGALAAMTVISVI-LGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGV 228 (249)
Q Consensus 153 ElGDKTQLaTalLAaR~~~---~~VflGa~lAL~l~T~LsVl-~G~~l~~i~~~LP~r~~~~~l~il~~iaaiLFl~FGl 228 (249)
--|.-. +..+.-+.++++ +.+.+|..+|..+...++++ +|..+ +..|.-. .++++++++..+++|+
T Consensus 23 sPGP~~-~~v~~~~~~~G~r~~~~~~~G~~~g~~~~~~~~~~G~~~l~----~~~p~~~-----~~l~~~G~~yL~~la~ 92 (212)
T PRK10958 23 LPGPNS-LYVLSTAARRGVKAGYRAACGVFIGDAVLMFLAAAGVASLL----KATPLLF-----NVVKYLGAAYLLYLGV 92 (212)
T ss_pred CCchHH-HHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhHHHH-----HHHHHHHHHHHHHHHH
Confidence 334433 334445555553 46677888887777666654 34333 2334332 4578999999999999
Q ss_pred HHHHhhhc
Q 025693 229 STLLDAAS 236 (249)
Q Consensus 229 ~tL~ea~~ 236 (249)
++++++..
T Consensus 93 ~~~~~~~~ 100 (212)
T PRK10958 93 KMLRAALR 100 (212)
T ss_pred HHHHhhcc
Confidence 99987643
No 20
>PF03741 TerC: Integral membrane protein TerC family; InterPro: IPR005496 A family containining a number of integral membrane proteins is named after TerC protein. TerC has been implicated in resistance to tellurium, and may be involved in efflux of tellurium ions. The tellurite-resistant Escherichia coli strain KL53 was found during testing of a group of clinical isolates for antibiotic and heavy metal ion resistance []. The determinant of the strain's tellurite resistance was located on a large conjugative plasmid, and analyses showed the genes terB, terC, terD and terE were essential for conservation of this resistance. Members of this family contain a number of conserved aspartates which may be involved in metal ion binding.; GO: 0016021 integral to membrane
Probab=73.42 E-value=12 Score=32.76 Aligned_cols=68 Identities=18% Similarity=0.317 Sum_probs=46.6
Q ss_pred CcHHHHHHHHHHh---ccCCceeehHHHHHHHHHHHHHHHHhchhhhccccCCccccCCCchhHHHHHHHHHHHHHHHHH
Q 025693 155 GDKTFFIAALLAA---RNSAATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTL 231 (249)
Q Consensus 155 GDKTQLaTalLAa---R~~~~~VflGa~lAL~l~T~LsVl~G~~l~~i~~~LP~r~~~~~l~il~~iaaiLFl~FGl~tL 231 (249)
+|.-.+++++..- ++.+...+.|...|+++-.++-..+...++ .. .+ +++++|+..++.|+.++
T Consensus 12 ~DN~~vi~~~~~~lp~~~r~kal~~Gi~~A~~lR~~~i~~~~~ll~----~~--~~-------i~~igG~~Ll~~a~k~~ 78 (183)
T PF03741_consen 12 IDNAFVIAMIFRKLPPEQRRKALFWGIIGAIVLRIIFIFLASWLLS----IF--PW-------ILLIGGLFLLYIAIKLL 78 (183)
T ss_pred hhHHHHHHHHHhCCCHHHhhhhHHHhHHHHHHHHHHHHHHHHHHHH----HH--HH-------HHHHHHHHHHHHHHHHH
Confidence 5655555544332 234679999999999877777666665442 22 22 78888888888999988
Q ss_pred Hhhh
Q 025693 232 LDAA 235 (249)
Q Consensus 232 ~ea~ 235 (249)
++..
T Consensus 79 ~~~~ 82 (183)
T PF03741_consen 79 HEER 82 (183)
T ss_pred Hhcc
Confidence 8765
No 21
>PRK10995 inner membrane protein; Provisional
Probab=71.69 E-value=7.6 Score=34.49 Aligned_cols=23 Identities=17% Similarity=0.219 Sum_probs=19.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhc
Q 025693 214 IDDIAAVCLLVYFGVSTLLDAAS 236 (249)
Q Consensus 214 il~~iaaiLFl~FGl~tL~ea~~ 236 (249)
-.++++|++.+.+|+.|++....
T Consensus 75 a~rIaGGilL~~igi~ml~~~~~ 97 (221)
T PRK10995 75 GLRIAGGLIVAFIGFRMLFPQQK 97 (221)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCC
Confidence 37899999999999999976533
No 22
>PRK10520 rhtB homoserine/homoserine lactone efflux protein; Provisional
Probab=71.38 E-value=19 Score=30.80 Aligned_cols=77 Identities=16% Similarity=0.108 Sum_probs=49.6
Q ss_pred HHHhhcCcHHHHHHHHHHhccCC---ceeehHHHHHHHHHHHHHHHHhchhhhccccCCccccCCCchhHHHHHHHHHHH
Q 025693 149 IFFSELGDKTFFIAALLAARNSA---ATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVY 225 (249)
Q Consensus 149 IFLAElGDKTQLaTalLAaR~~~---~~VflGa~lAL~l~T~LsVl~G~~l~~i~~~LP~r~~~~~l~il~~iaaiLFl~ 225 (249)
+...--|. ..+..+.-++++++ +...+|..+|..+...++++.-..+ -...|.-. .++++++++-.++
T Consensus 15 ~~~~sPGP-~~~~v~~~~~~~G~r~~~~~~~G~~~g~~v~~~~~~~Gl~~l---~~~~p~~~-----~~lk~~Ga~YL~~ 85 (205)
T PRK10520 15 ILSLSPGS-GAINTMSTSISHGYRGAVASIAGLQTGLAIHIVLVGVGLGAL---FSQSLLAF-----EVLKWAGAAYLIW 85 (205)
T ss_pred HHhcCCch-hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhHHHH-----HHHHHHHHHHHHH
Confidence 33334444 34455555666553 5777899999888877665544332 12334333 4579999999999
Q ss_pred HHHHHHHhh
Q 025693 226 FGVSTLLDA 234 (249)
Q Consensus 226 FGl~tL~ea 234 (249)
+|+++++..
T Consensus 86 lg~~~~~s~ 94 (205)
T PRK10520 86 LGIQQWRAA 94 (205)
T ss_pred HHHHHHhCC
Confidence 999999864
No 23
>COG1971 Predicted membrane protein [Function unknown]
Probab=69.30 E-value=9.9 Score=34.16 Aligned_cols=43 Identities=26% Similarity=0.420 Sum_probs=32.3
Q ss_pred HHHHHHHHHHhchhhhccccCCccccCCCchhHHHHHHHHHHHHHHHHHHhhhc
Q 025693 183 AAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDAAS 236 (249)
Q Consensus 183 ~l~T~LsVl~G~~l~~i~~~LP~r~~~~~l~il~~iaaiLFl~FGl~tL~ea~~ 236 (249)
++++.++..+|+.+ ...++.+ ..+++|++++.||++.+++.+.
T Consensus 147 ~il~~~G~~IG~~~---g~~~g~~--------ae~lgGiiLI~~G~~iL~~~~~ 189 (190)
T COG1971 147 LILSALGAIIGRKL---GKFLGKY--------AEILGGIILIGIGVKILLEHLS 189 (190)
T ss_pred HHHHHHHHHHHHHH---HHHHhhH--------HHHHHHHHHHHHHHHHHHHhcc
Confidence 45566677777655 4566554 5899999999999999998653
No 24
>TIGR03716 R_switched_YkoY integral membrane protein, YkoY family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains proteins YceF and YkoY from Bacillus subtilis. A transport function is proposed.
Probab=67.06 E-value=15 Score=33.23 Aligned_cols=74 Identities=28% Similarity=0.326 Sum_probs=54.8
Q ss_pred HHhhcCcHHHH---HHHHHHhccCCceeehHHHHHHHHHHHHHHHHhchhhhccccCCccccCCCchhHHHHHHHHHHHH
Q 025693 150 FFSELGDKTFF---IAALLAARNSAATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYF 226 (249)
Q Consensus 150 FLAElGDKTQL---aTalLAaR~~~~~VflGa~lAL~l~T~LsVl~G~~l~~i~~~LP~r~~~~~l~il~~iaaiLFl~F 226 (249)
..-|+=|=.+= +.++.|...+++.++.|-..+..+|-..+-++.+++ ++.| .++++++++..+.
T Consensus 100 ~~I~~~DlvFSlDSV~A~~git~~~~ii~~g~~~sIl~lr~~s~~l~~li----~r~p---------~L~~~~~~iL~~i 166 (215)
T TIGR03716 100 LKVELMDIAFSVDSILAAVALSGQFWVVFLGGIIGILIMRFAATIFVKLL----ERFP---------ELETAAFLLIGWI 166 (215)
T ss_pred HHHHHHHHHHHhhhHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHH----HHHH---------HHHHHHHHHHHHH
Confidence 33445565552 233344457789999999999999999999988866 3444 4789999999999
Q ss_pred HHHHHHhhhc
Q 025693 227 GVSTLLDAAS 236 (249)
Q Consensus 227 Gl~tL~ea~~ 236 (249)
|+.++.+++.
T Consensus 167 g~kLil~~~~ 176 (215)
T TIGR03716 167 GVKLLLETLA 176 (215)
T ss_pred HHHHHHHHHh
Confidence 9999998744
No 25
>TIGR03716 R_switched_YkoY integral membrane protein, YkoY family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains proteins YceF and YkoY from Bacillus subtilis. A transport function is proposed.
Probab=67.02 E-value=9.8 Score=34.39 Aligned_cols=66 Identities=12% Similarity=0.255 Sum_probs=43.7
Q ss_pred CcHHHHHHHHHH---hccCCceeehHHHHHHHHHHHHHHHHhchhhhccccCCccccCCCchhHHHHHHHHHHHHHHHHH
Q 025693 155 GDKTFFIAALLA---ARNSAATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTL 231 (249)
Q Consensus 155 GDKTQLaTalLA---aR~~~~~VflGa~lAL~l~T~LsVl~G~~l~~i~~~LP~r~~~~~l~il~~iaaiLFl~FGl~tL 231 (249)
+|.-.+++++.. .++.+...+.|...|+++--++-.+....++ +| + +++++|++.++.|+.++
T Consensus 9 ~DN~~via~~~~~LP~~~r~~al~~Gi~gAivlR~i~i~~~~~Ll~-----~~--~-------l~~iGG~~Ll~~~~k~l 74 (215)
T TIGR03716 9 ADNALVLAVMVKHLPEKQRKKALFYGLIGAYVFRFIALFLASFLIK-----FW--W-------IKAIGALYLLYLAIKHF 74 (215)
T ss_pred hhHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HH--H-------HHHHHHHHHHHHHHHHH
Confidence 455555544432 1233578999999999887777666554442 22 3 57888888888888888
Q ss_pred Hhh
Q 025693 232 LDA 234 (249)
Q Consensus 232 ~ea 234 (249)
++.
T Consensus 75 ~~~ 77 (215)
T TIGR03716 75 RKK 77 (215)
T ss_pred Hhc
Confidence 753
No 26
>PF03741 TerC: Integral membrane protein TerC family; InterPro: IPR005496 A family containining a number of integral membrane proteins is named after TerC protein. TerC has been implicated in resistance to tellurium, and may be involved in efflux of tellurium ions. The tellurite-resistant Escherichia coli strain KL53 was found during testing of a group of clinical isolates for antibiotic and heavy metal ion resistance []. The determinant of the strain's tellurite resistance was located on a large conjugative plasmid, and analyses showed the genes terB, terC, terD and terE were essential for conservation of this resistance. Members of this family contain a number of conserved aspartates which may be involved in metal ion binding.; GO: 0016021 integral to membrane
Probab=65.80 E-value=10 Score=33.11 Aligned_cols=75 Identities=24% Similarity=0.367 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHhhcCcHHH-----HHHHHHHhccCCceeehHHHHHHHHHHHHHHHHhchhhhccccCCccccCCCchhH
Q 025693 141 GFASAFLLIFFSELGDKTF-----FIAALLAARNSAATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPID 215 (249)
Q Consensus 141 aFltAFllIFLAElGDKTQ-----LaTalLAaR~~~~~VflGa~lAL~l~T~LsVl~G~~l~~i~~~LP~r~~~~~l~il 215 (249)
.++.+... -|+=|=.+ ++++.++ .+++.++.|.+.|..+|-..+-.+.+++ ++.| .+
T Consensus 104 ~~~~~v~~---I~~~DlvfSlDSV~a~~~it--~~~~iv~~g~i~si~~m~~~~~~~~~~l----~~~p---------~l 165 (183)
T PF03741_consen 104 SLWLAVIQ---IELADLVFSLDSVLAAVGIT--DDFFIVITGNIISILLMRFLSFLLAKLL----ERFP---------YL 165 (183)
T ss_pred HHHHHHHH---HHHHHHHHHHhHHHHHHHHh--hhHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHH---------HH
Confidence 34444443 34455554 3344444 6789999999999999999999999877 3444 37
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 025693 216 DIAAVCLLVYFGVSTLLD 233 (249)
Q Consensus 216 ~~iaaiLFl~FGl~tL~e 233 (249)
+++++++....|+.++.|
T Consensus 166 ~~~~~~~L~~ig~~li~~ 183 (183)
T PF03741_consen 166 KYLAAAILGFIGVKLILE 183 (183)
T ss_pred HHHHHHHHHHHHHHHhhC
Confidence 899999999999998864
No 27
>PRK09304 arginine exporter protein; Provisional
Probab=63.79 E-value=18 Score=31.26 Aligned_cols=65 Identities=11% Similarity=0.115 Sum_probs=40.2
Q ss_pred HHHHhccC-CceeehHHHHHHHHHHHHHHHHhchhhhccccCCccccCCCchhHHHHHHHHHHHHHHHHHHhhh
Q 025693 163 ALLAARNS-AATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDAA 235 (249)
Q Consensus 163 alLAaR~~-~~~VflGa~lAL~l~T~LsVl~G~~l~~i~~~LP~r~~~~~l~il~~iaaiLFl~FGl~tL~ea~ 235 (249)
+.-+.+++ .....+|...|.++...++++.-..+ -...|.-. .++++++++-.+.+|+.+++...
T Consensus 27 ~~~~~~~~~~~~~~~Gi~~g~~~~~~la~~Gl~~L---l~~~p~~~-----~~l~~~Ga~YLlyLg~~~~rs~~ 92 (207)
T PRK09304 27 MNQGIRRQYHLMIALLCALSDLVLICAGIFGGSAL---LMQSPWLL-----ALVTWGGVAFLLWYGFGAFKTAM 92 (207)
T ss_pred HHHHHcccchHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHhc
Confidence 33344543 34666777777777766654433322 12334332 45788999988999999998753
No 28
>COG0861 TerC Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism]
Probab=62.33 E-value=21 Score=33.07 Aligned_cols=79 Identities=22% Similarity=0.324 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHhhcCcHHH-----HHHHHHHhccCCceeehHHHHHHHHHHHHHHHHhchhhhccccCCccccCCCchh
Q 025693 140 RGFASAFLLIFFSELGDKTF-----FIAALLAARNSAATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPI 214 (249)
Q Consensus 140 ~aFltAFllIFLAElGDKTQ-----LaTalLAaR~~~~~VflGa~lAL~l~T~LsVl~G~~l~~i~~~LP~r~~~~~l~i 214 (249)
..|+.+...|-++ |=.| +++++++ ..++.|+.|.+.|..+|=..+-.+.++++ +.| .
T Consensus 131 ~~f~~ai~~I~i~---D~vFSlDSV~Aa~g~~--~~~~im~~a~i~aI~~m~~aa~~l~~ll~----r~p---------~ 192 (254)
T COG0861 131 TPFWGAIIQIELA---DLVFSLDSVIAAVGMA--GHPFVMVTAVIFAILVMRFAAFLLARLLE----RHP---------T 192 (254)
T ss_pred CcHHHHHHHHHHH---HHHHhhhHHHHHHHHh--cCchHHHHHHHHHHHHHHHHHHHHHHHHH----Hch---------H
Confidence 4455555544333 4333 3444444 66899999999999999999999998773 444 3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhc
Q 025693 215 DDIAAVCLLVYFGVSTLLDAAS 236 (249)
Q Consensus 215 l~~iaaiLFl~FGl~tL~ea~~ 236 (249)
+.+++.++.++.|+.++.++..
T Consensus 193 l~~~~~~iL~~IG~kli~~~~~ 214 (254)
T COG0861 193 LKYLALVILLFIGVKLILEGLA 214 (254)
T ss_pred HHHHHHHHHHHHHHHHHHhhhc
Confidence 6788899999999999998743
No 29
>TIGR03717 R_switched_YjbE integral membrane protein, YjbE family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family commonly are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains protein YjbE from Bacillus subtilis. A transport function is proposed.
Probab=62.13 E-value=22 Score=30.92 Aligned_cols=64 Identities=27% Similarity=0.422 Sum_probs=46.8
Q ss_pred CcHHHHHHHHHHhccC----CceeehHHHHHHHHHHHHHHHHhchhhhccccCCccccCCCchhHHHHHHHHHHHHHHHH
Q 025693 155 GDKTFFIAALLAARNS----AATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVST 230 (249)
Q Consensus 155 GDKTQLaTalLAaR~~----~~~VflGa~lAL~l~T~LsVl~G~~l~~i~~~LP~r~~~~~l~il~~iaaiLFl~FGl~t 230 (249)
+|.-.++++ .+.+.+ +...+.|...|+++..+........++ +| + .++++|++.++.|+.|
T Consensus 14 ~DN~~vi~~-~t~~lp~~~r~~~~~~G~~~A~vlr~if~~~G~~ll~-----~~--~-------~~iaGGllLl~ia~~m 78 (176)
T TIGR03717 14 GDNAVVIAL-AARNLPAHQRKKAIFWGTAGAIVLRILLTAVAVYLLA-----IP--F-------LKLIGGLLLLWIGWKL 78 (176)
T ss_pred HHHHHHHHH-HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hH--H-------HHHHHHHHHHHHHHHH
Confidence 677777766 233333 368899999999988877776665442 22 2 6889999999999999
Q ss_pred HHh
Q 025693 231 LLD 233 (249)
Q Consensus 231 L~e 233 (249)
+.+
T Consensus 79 l~~ 81 (176)
T TIGR03717 79 LLE 81 (176)
T ss_pred Hhc
Confidence 874
No 30
>PRK10323 cysteine/O-acetylserine exporter; Provisional
Probab=61.75 E-value=18 Score=31.00 Aligned_cols=70 Identities=13% Similarity=0.109 Sum_probs=46.5
Q ss_pred HHHHHHHHHHhccCC---ceeehHHHHHHHHHHHHHHHHhchhhhccccCCccccCCCchhHHHHHHHHHHHHHHHHHHh
Q 025693 157 KTFFIAALLAARNSA---ATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLD 233 (249)
Q Consensus 157 KTQLaTalLAaR~~~---~~VflGa~lAL~l~T~LsVl~G~~l~~i~~~LP~r~~~~~l~il~~iaaiLFl~FGl~tL~e 233 (249)
=..+..+.-++++++ +...+|...|..+...+++.....+ .+..|.-. .++++++++-.+++|+++++.
T Consensus 22 P~~~~v~~~~~~~G~r~a~~~~~G~~~g~~~~~~~~~~g~~~l---~~~~p~~~-----~vlk~~Ga~YLlyLg~~~~~s 93 (195)
T PRK10323 22 PNNILALSSATSHGFRQSTRVLAGMSLGFLIVMLLCAGISFSL---AVIDPAAV-----HLLSWAGAAYIVWLAWKIATS 93 (195)
T ss_pred hHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH-----HHHHHHHHHHHHHHHHHHHhc
Confidence 345555566666663 5788899999988866666443222 22334332 357888888889999999986
Q ss_pred h
Q 025693 234 A 234 (249)
Q Consensus 234 a 234 (249)
+
T Consensus 94 ~ 94 (195)
T PRK10323 94 P 94 (195)
T ss_pred c
Confidence 4
No 31
>TIGR03718 R_switched_Alx integral membrane protein, TerC family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains TerC itself from Alcaligenes sp. plasmid IncHI2 pMER610 and from Proteus mirabilis. It also contains the alkaline-inducible E. coli protein Alx, which unlike the two TerC examples is preceded by a yybP-ykoY leader.
Probab=61.25 E-value=26 Score=33.36 Aligned_cols=75 Identities=25% Similarity=0.375 Sum_probs=55.5
Q ss_pred HHHHHhhcCcHHHH---HHHHHHhccCCceeehHHHHHHHHHHHHHHHHhchhhhccccCCccccCCCchhHHHHHHHHH
Q 025693 147 LLIFFSELGDKTFF---IAALLAARNSAATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLL 223 (249)
Q Consensus 147 llIFLAElGDKTQL---aTalLAaR~~~~~VflGa~lAL~l~T~LsVl~G~~l~~i~~~LP~r~~~~~l~il~~iaaiLF 223 (249)
..+..-|+=|=.|= +.+..|...+++.|+.|.+.|++.+-.+--++.+.+ ++.| .+++.++++.
T Consensus 193 ~vli~Ie~~DlvFslDSIpAi~aiT~d~~iV~tsnifaIlgLR~lyf~l~~ll----~rf~---------~L~~~~a~iL 259 (302)
T TIGR03718 193 LVLVLVETTDLIFAVDSIPAIFAITQDPFIVFTSNIFAILGLRSLYFLLAGLL----ERFH---------YLKYGLAVIL 259 (302)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHhhcCCeEEehHHHHHHHHHHHHHHHHHHHH----HHhH---------HHHHHHHHHH
Confidence 34455566666653 355667778899999999988887777766677655 3443 4789999999
Q ss_pred HHHHHHHHHhh
Q 025693 224 VYFGVSTLLDA 234 (249)
Q Consensus 224 l~FGl~tL~ea 234 (249)
.+.|++|+.++
T Consensus 260 ~fIGvkmll~~ 270 (302)
T TIGR03718 260 VFIGVKMLLHA 270 (302)
T ss_pred HHHHHHHHHhh
Confidence 99999999975
No 32
>PF01914 MarC: MarC family integral membrane protein; InterPro: IPR002771 Members of this family are integral membrane proteins that includes the antibiotic resistance protein MarC. These proteins may be transporters. ; GO: 0016021 integral to membrane
Probab=55.31 E-value=36 Score=29.99 Aligned_cols=75 Identities=17% Similarity=0.184 Sum_probs=46.8
Q ss_pred CcHHHHHHHHHHhccCCc---eeehHHHHHHHHHHHHHHHHhchhhhccccCCccccCCCchhHHHHHHHHHHHHHHHHH
Q 025693 155 GDKTFFIAALLAARNSAA---TVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTL 231 (249)
Q Consensus 155 GDKTQLaTalLAaR~~~~---~VflGa~lAL~l~T~LsVl~G~~l~~i~~~LP~r~~~~~l~il~~iaaiLFl~FGl~tL 231 (249)
|.-|-=+.+.++++++.+ .+.+++.+...+++.+.-..+.. +-++.+.+.+.++..+.|++...+|+.++
T Consensus 123 GPG~It~vi~~~~~~~~~~~~~~~~~ai~~~~~~~~l~l~~a~~-------i~~~lG~~g~~vi~Ri~Glil~aiavq~i 195 (203)
T PF01914_consen 123 GPGTITTVIVLSAEAGSLQSLLIVLIAILLVALITYLILRFADK-------IMRRLGKTGLQVITRIMGLILAAIAVQMI 195 (203)
T ss_pred ChHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHhHH-------HHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555666777777653 33333333333444444444433 23334555677789999999999999999
Q ss_pred Hhhhc
Q 025693 232 LDAAS 236 (249)
Q Consensus 232 ~ea~~ 236 (249)
.++.+
T Consensus 196 ~~Gl~ 200 (203)
T PF01914_consen 196 LSGLR 200 (203)
T ss_pred HHHHH
Confidence 98764
No 33
>TIGR03718 R_switched_Alx integral membrane protein, TerC family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains TerC itself from Alcaligenes sp. plasmid IncHI2 pMER610 and from Proteus mirabilis. It also contains the alkaline-inducible E. coli protein Alx, which unlike the two TerC examples is preceded by a yybP-ykoY leader.
Probab=54.63 E-value=20 Score=34.16 Aligned_cols=77 Identities=22% Similarity=0.320 Sum_probs=48.9
Q ss_pred HHHHHHHHhhc---CcHHHHHHHHHHhc-----cCCceeehHHHHHHHHHHHHHHHHhchhhhccccCCccccCCCchhH
Q 025693 144 SAFLLIFFSEL---GDKTFFIAALLAAR-----NSAATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPID 215 (249)
Q Consensus 144 tAFllIFLAEl---GDKTQLaTalLAaR-----~~~~~VflGa~lAL~l~T~LsVl~G~~l~~i~~~LP~r~~~~~l~il 215 (249)
..|....+-|. +|+-+..++.++.+ +.+...+.|...|+++-.++-. +|.++ -+.+| + +
T Consensus 63 ~~f~tg~llE~~LSvDN~fV~~~if~~f~vP~~~q~rvL~~Gi~gAlvlR~i~i~-~g~~L---i~~f~--w-------i 129 (302)
T TIGR03718 63 LEFLTGYLIEKSLSVDNLFVFLLIFSYFAVPREYQHRVLFWGILGALVLRAIFIA-LGAAL---IEQFH--W-------V 129 (302)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH---HHHhH--H-------H
Confidence 34444455554 79999888888763 3347889999998877655544 44433 12222 2 5
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 025693 216 DIAAVCLLVYFGVSTLLD 233 (249)
Q Consensus 216 ~~iaaiLFl~FGl~tL~e 233 (249)
.+++|+..++-|++++++
T Consensus 130 ~~ifG~fLi~~a~k~~~~ 147 (302)
T TIGR03718 130 LYIFGAFLLYTGIKMLFE 147 (302)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 667777777777777764
No 34
>PRK11469 hypothetical protein; Provisional
Probab=54.47 E-value=13 Score=32.56 Aligned_cols=44 Identities=23% Similarity=0.347 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHhchhhhccccCCccccCCCchhHHHHHHHHHHHHHHHHHHhhh
Q 025693 181 ALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDAA 235 (249)
Q Consensus 181 AL~l~T~LsVl~G~~l~~i~~~LP~r~~~~~l~il~~iaaiLFl~FGl~tL~ea~ 235 (249)
--++++..++.+|+.+ ++++- ++ ..+++|++++++|++++.+..
T Consensus 143 ~s~~~~~~G~~lG~~~---g~~~g-~~-------a~~lgG~iLI~iGi~il~~h~ 186 (188)
T PRK11469 143 ATLIMSTLGMMVGRFI---GSIIG-KK-------AEILGGLVLIGIGVQILWTHF 186 (188)
T ss_pred HHHHHHHHHHHHHHHH---HHHHH-HH-------HHHHHHHHHHHHHHHHHHHHc
Confidence 3445666677777754 23332 33 588999999999999998754
No 35
>PRK11111 hypothetical protein; Provisional
Probab=51.93 E-value=32 Score=30.80 Aligned_cols=31 Identities=19% Similarity=0.278 Sum_probs=24.9
Q ss_pred cccCCCchhHHHHHHHHHHHHHHHHHHhhhc
Q 025693 206 RFGQTDLPIDDIAAVCLLVYFGVSTLLDAAS 236 (249)
Q Consensus 206 r~~~~~l~il~~iaaiLFl~FGl~tL~ea~~ 236 (249)
+.+.+.+.++..+.|++...+|+.++.++..
T Consensus 176 ~LG~~G~~vi~RimGliL~aiaVq~i~~Gi~ 206 (214)
T PRK11111 176 LLGQTGINVITRIMGLLLMALGIEFIVTGIK 206 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345556678899999999999999998864
No 36
>PRK10995 inner membrane protein; Provisional
Probab=50.33 E-value=40 Score=29.96 Aligned_cols=29 Identities=21% Similarity=0.264 Sum_probs=23.6
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHHhhhc
Q 025693 208 GQTDLPIDDIAAVCLLVYFGVSTLLDAAS 236 (249)
Q Consensus 208 ~~~~l~il~~iaaiLFl~FGl~tL~ea~~ 236 (249)
+.+.+.++..+.|++...+|+.+++++..
T Consensus 186 G~~gl~ii~Ri~GliL~aiavq~i~~Gi~ 214 (221)
T PRK10995 186 GKGGIEAISRLMGFLLVCMGVQFIINGIL 214 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33446668899999999999999998864
No 37
>TIGR00145 FTR1 family protein. A characterized member from yeast acts as oxidase-coupled high affinity iron transporter. Note that the apparent member from E. coli K12-MG1655 has a frameshift by homology with member sequences from other species.
Probab=49.93 E-value=20 Score=33.51 Aligned_cols=61 Identities=21% Similarity=0.230 Sum_probs=40.4
Q ss_pred CceeehHHHHHHHHHHHHHHHHhchhhhccccCCccc-cC-CCchhHHHHHHHHHHHHHHHHHHhhhc
Q 025693 171 AATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRF-GQ-TDLPIDDIAAVCLLVYFGVSTLLDAAS 236 (249)
Q Consensus 171 ~~~VflGa~lAL~l~T~LsVl~G~~l~~i~~~LP~r~-~~-~~l~il~~iaaiLFl~FGl~tL~ea~~ 236 (249)
..+|+.|+.+|+++.-++++++-..+. .++... .+ -+ -++.++++++....++||...+.+
T Consensus 38 ~~~V~~G~~~gl~~s~~~a~~~~~~~~----~~~~~~~~el~e-g~~~lvAv~~l~~m~~Wm~~~~~~ 100 (283)
T TIGR00145 38 RGWVWVGVLAGFAACLAIGIGVIGAYG----SLQKDEFKELLE-GIFGVIAVVMLSYMGLWMLRMQRK 100 (283)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHh----hcCchhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 458999999999998887777665432 222110 00 01 125678889999999999966544
No 38
>TIGR00997 ispZ intracellular septation protein A. This partially characterized protein, whose absence can cause a cell division defect in an intracellularly replicating bacterium, is found only so far only in the Proteobacteria.
Probab=49.58 E-value=43 Score=29.58 Aligned_cols=46 Identities=24% Similarity=0.178 Sum_probs=34.2
Q ss_pred ehHHHHHHHHHHHHHHHHhchhhhccccCCccccCCCchhHHHHHHHHHHHHHHHHHH
Q 025693 175 FAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLL 232 (249)
Q Consensus 175 flGa~lAL~l~T~LsVl~G~~l~~i~~~LP~r~~~~~l~il~~iaaiLFl~FGl~tL~ 232 (249)
..-++.++++.+++.+......+ +++|. +++++.++-++||..+++
T Consensus 22 I~~AT~~~~vat~~~~~~~~~~~---~~v~~---------m~~is~~lv~vFGglTl~ 67 (178)
T TIGR00997 22 IFAATIALLVATIIAIGLSYVKY---KKVEK---------MQWISFVLIVVFGGLTLI 67 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh---CCccH---------HHHHHHHHHHHHHHHHHH
Confidence 34456677788888888877552 45542 689999999999998887
No 39
>PRK10019 nickel/cobalt efflux protein RcnA; Provisional
Probab=49.33 E-value=27 Score=32.83 Aligned_cols=25 Identities=4% Similarity=0.054 Sum_probs=21.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhcC
Q 025693 213 PIDDIAAVCLLVYFGVSTLLDAAST 237 (249)
Q Consensus 213 ~il~~iaaiLFl~FGl~tL~ea~~~ 237 (249)
+.+..+++++.+++|+|++|.+...
T Consensus 88 ~~le~~S~~lii~lGl~ll~r~~r~ 112 (279)
T PRK10019 88 PWLQLISAVIIISTAFWMFWRTWRG 112 (279)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4478999999999999999987643
No 40
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=47.70 E-value=48 Score=26.95 Aligned_cols=24 Identities=25% Similarity=0.272 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHhchhhhccccCCcc
Q 025693 180 GALAAMTVISVILGRTFHYVDEILPFR 206 (249)
Q Consensus 180 lAL~l~T~LsVl~G~~l~~i~~~LP~r 206 (249)
..+++-+++++++|+|+ ++.+|..
T Consensus 50 ~~~v~pil~G~~lG~WL---D~~~~t~ 73 (100)
T TIGR02230 50 WSVAIPTLLGVAVGIWL---DRHYPSP 73 (100)
T ss_pred HHHHHHHHHHHHHHHHH---HhhcCCC
Confidence 34566778888889865 6777754
No 41
>TIGR03717 R_switched_YjbE integral membrane protein, YjbE family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family commonly are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains protein YjbE from Bacillus subtilis. A transport function is proposed.
Probab=46.98 E-value=42 Score=29.16 Aligned_cols=68 Identities=15% Similarity=0.157 Sum_probs=49.6
Q ss_pred hhcCcHHH----HHHHHHHhccCCceeehHHHHHHHHHHHHHHHHhchhhhccccCCccccCCCchhHHHHHHHHHHHHH
Q 025693 152 SELGDKTF----FIAALLAARNSAATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFG 227 (249)
Q Consensus 152 AElGDKTQ----LaTalLAaR~~~~~VflGa~lAL~l~T~LsVl~G~~l~~i~~~LP~r~~~~~l~il~~iaaiLFl~FG 227 (249)
-|+=|=.+ ..|+.=+++.+.+.++.|..++..+|-..+-++.+++ ++.| .++++++++..+.|
T Consensus 103 I~~~D~~fS~DsV~a~~~~~~~~~~li~~g~~i~i~~m~~~s~~~~~~~----~~~p---------~l~~~~~~~L~~ig 169 (176)
T TIGR03717 103 IVIADAVMSLDNVLAVAGAAHGHLGLLIFGLLLSIPIIVWGSTLILKLM----DRFP---------WIIYIGAALLGYVA 169 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHH----HHHH---------HHHHHHHHHHHHHH
Confidence 34445555 2333333345678999999999999999998888776 3443 47889999999999
Q ss_pred HHHHH
Q 025693 228 VSTLL 232 (249)
Q Consensus 228 l~tL~ 232 (249)
+.++.
T Consensus 170 ~kl~~ 174 (176)
T TIGR03717 170 GEMIV 174 (176)
T ss_pred HHHhc
Confidence 99986
No 42
>PF02659 DUF204: Domain of unknown function DUF; InterPro: IPR003810 Uncharacterised domain in proteins of unknown function.
Probab=46.86 E-value=35 Score=24.51 Aligned_cols=35 Identities=17% Similarity=0.501 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHhchhhhccccCCccccCCCchhHHHHHHHHHHHHH
Q 025693 182 LAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFG 227 (249)
Q Consensus 182 L~l~T~LsVl~G~~l~~i~~~LP~r~~~~~l~il~~iaaiLFl~FG 227 (249)
-.+++.++..+|+.+ .++++ ++ .+|+++++++++|
T Consensus 33 ~~~~~~~G~~~G~~~---~~~~~-~~-------~~~igg~iLi~iG 67 (67)
T PF02659_consen 33 QFIMPLLGLLLGRRL---GRFIG-SY-------AEWIGGIILIFIG 67 (67)
T ss_pred HHHHHHHHHHHHHHH---HHHHH-HH-------HHHHHHHHHHHHC
Confidence 467788888889876 35444 44 6899999988876
No 43
>PRK10621 hypothetical protein; Provisional
Probab=42.79 E-value=53 Score=29.40 Aligned_cols=47 Identities=11% Similarity=0.002 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHhchhhhccccCCccccCCCchhHHHHHHHHHHHHHHHHHHhhhc
Q 025693 180 GALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDAAS 236 (249)
Q Consensus 180 lAL~l~T~LsVl~G~~l~~i~~~LP~r~~~~~l~il~~iaaiLFl~FGl~tL~ea~~ 236 (249)
+.+++.+.+++.+|..+ .+++|++. .+++..++.++.|++++++.+.
T Consensus 210 l~l~~g~~~G~~lG~~l---~~~~~~~~-------lr~~~~~ll~~~~i~~~~~~~~ 256 (266)
T PRK10621 210 FVMLVGQFLGARLGARL---VLSKGQKL-------IRPMIVIVSAVMSAKLLYDSHG 256 (266)
T ss_pred HHHHHHHHHHHHHHHHH---HHHcCchH-------hHHHHHHHHHHHHHHHHHHHHh
Confidence 34556677788888755 57788887 7888888889999999988765
No 44
>PF01914 MarC: MarC family integral membrane protein; InterPro: IPR002771 Members of this family are integral membrane proteins that includes the antibiotic resistance protein MarC. These proteins may be transporters. ; GO: 0016021 integral to membrane
Probab=42.66 E-value=41 Score=29.64 Aligned_cols=26 Identities=27% Similarity=0.379 Sum_probs=20.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhhcC
Q 025693 212 LPIDDIAAVCLLVYFGVSTLLDAAST 237 (249)
Q Consensus 212 l~il~~iaaiLFl~FGl~tL~ea~~~ 237 (249)
++-.++++|++++.+|+.|+......
T Consensus 69 l~af~IaGGiiL~~ia~~ml~~~~~~ 94 (203)
T PF01914_consen 69 LPAFRIAGGIILFLIALEMLFGSPSS 94 (203)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCcc
Confidence 34478999999999999999865443
No 45
>PF02535 Zip: ZIP Zinc transporter; InterPro: IPR003689 These ZIP zinc transporter proteins define a family of metal ion transporters that are found in plants, protozoa, fungi, invertebrates, and vertebrates, making it now possible to address questions of metal ion accumulation and homeostasis in diverse organisms [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane
Probab=41.39 E-value=1e+02 Score=27.36 Aligned_cols=83 Identities=13% Similarity=0.023 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHhhcCcHHHHHHHHHHhccCCceeehHHHHHHHHHHHHHHHHhchhhhc-cccCCccccCCCchhHHHH
Q 025693 140 RGFASAFLLIFFSELGDKTFFIAALLAARNSAATVFAGTFGALAAMTVISVILGRTFHYV-DEILPFRFGQTDLPIDDIA 218 (249)
Q Consensus 140 ~aFltAFllIFLAElGDKTQLaTalLAaR~~~~~VflGa~lAL~l~T~LsVl~G~~l~~i-~~~LP~r~~~~~l~il~~i 218 (249)
..++..++=-+..++++=.++. .+..+++..++ ..+...+++-+++++|..+.+. ....... -..+..-+
T Consensus 202 ~~~~ai~~Hk~~e~~~~~~~l~----~~~~~~~~~~~-~~~~~sl~~piG~~ig~~~~~~~~~~~~~~----~~~~~~a~ 272 (317)
T PF02535_consen 202 SLFIAIILHKIPEGFALGSILV----KAGFSKRKALL-LLLLFSLSTPIGALIGIAISNSGSSSSSDI----VSGILLAF 272 (317)
T ss_pred HHHHHHHHhHhHHHhhhhhhhh----hhccccchhhH-HHHHHHHHHHHHHHHHHHhcccCccchhHH----HHHHHHHH
Confidence 3344444444455566554444 34455555555 7777888899999999765000 0111111 12234566
Q ss_pred HHHHHHHHHHHHH
Q 025693 219 AVCLLVYFGVSTL 231 (249)
Q Consensus 219 aaiLFl~FGl~tL 231 (249)
+++.|++.++.-+
T Consensus 273 aaG~~lyv~~~el 285 (317)
T PF02535_consen 273 AAGTFLYVAFVEL 285 (317)
T ss_pred HHHHHHHHHHHHH
Confidence 7777888887644
No 46
>PF03239 FTR1: Iron permease FTR1 family; InterPro: IPR004923 The Saccharomyces cerevisiae (Baker's yeast) iron permease FTR1 is a plasma membrane permease for high-affinity iron uptake. Also included in this family are bacterial hypothetical integral membrane proteins.; GO: 0055085 transmembrane transport, 0016020 membrane
Probab=40.09 E-value=58 Score=30.30 Aligned_cols=60 Identities=18% Similarity=0.146 Sum_probs=39.4
Q ss_pred CceeehHHHHHHHHHHHHHHHHhchhhhccccCCccccCCCc----hhHHHHHHHHHHHHHHHHHHhh
Q 025693 171 AATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDL----PIDDIAAVCLLVYFGVSTLLDA 234 (249)
Q Consensus 171 ~~~VflGa~lAL~l~T~LsVl~G~~l~~i~~~LP~r~~~~~l----~il~~iaaiLFl~FGl~tL~ea 234 (249)
..+||.|+.+|++...++++++-.... .++..+..... -++..++.++-...++||...+
T Consensus 35 ~~~V~~G~~~g~~~s~~~~~~~~~~~~----~~~~~~~~~~~e~~eg~~~liA~~li~~m~~wm~~~~ 98 (306)
T PF03239_consen 35 RRWVWLGVAAGLVASLVIGAVFAVIFY----TLSGDYWGISEELFEGAISLIAVALITWMVFWMRRHG 98 (306)
T ss_pred hheeeecHhHHHHHHHHHHHHHHHHHH----hhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 479999999999999998888776553 23320000000 1145666777788889998753
No 47
>PRK00259 intracellular septation protein A; Reviewed
Probab=39.72 E-value=78 Score=27.81 Aligned_cols=46 Identities=22% Similarity=0.225 Sum_probs=33.7
Q ss_pred ehHHHHHHHHHHHHHHHHhchhhhccccCCccccCCCchhHHHHHHHHHHHHHHHHHH
Q 025693 175 FAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLL 232 (249)
Q Consensus 175 flGa~lAL~l~T~LsVl~G~~l~~i~~~LP~r~~~~~l~il~~iaaiLFl~FGl~tL~ 232 (249)
...++.++++.+++.+...... .+++|. ++++++++-++||..+++
T Consensus 22 i~~AT~~~i~a~~~~~~~~~~~---~~~v~~---------m~~i~~~lv~vfGglTl~ 67 (179)
T PRK00259 22 IYAATAALIVATVIQLAISWIR---YRKVEK---------MQLISLVVVVVFGGLTLV 67 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---hCCcch---------hHHHHHHHHHHHHHHHHH
Confidence 4456667777888888777654 345543 578999999999999886
No 48
>COG0730 Predicted permeases [General function prediction only]
Probab=38.17 E-value=1.2e+02 Score=26.75 Aligned_cols=55 Identities=20% Similarity=0.149 Sum_probs=41.4
Q ss_pred CceeehHHHHHHHHHHHHHHHHhchhhhccccCCccccCCCchhHHHHHHHHHHHHHHHHHHhhh
Q 025693 171 AATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDAA 235 (249)
Q Consensus 171 ~~~VflGa~lAL~l~T~LsVl~G~~l~~i~~~LP~r~~~~~l~il~~iaaiLFl~FGl~tL~ea~ 235 (249)
+-.|-.-...-+.....+++.+|..+ ...+|.+. .+.+-+++.++.++++++...
T Consensus 68 ~~~v~~~~~~~l~~~~~~G~~lG~~l---~~~~~~~~-------l~~~~~~~ll~~~~~~~~~~~ 122 (258)
T COG0730 68 RGNVDWKLALILLLGALIGAFLGALL---ALLLPAEL-------LKLLFGLLLLLLALYMLLGPR 122 (258)
T ss_pred cCCccHHHHHHHHHHHHHHHHHHHHH---HHhCCHHH-------HHHHHHHHHHHHHHHHHHhcc
Confidence 34566666777777778888888644 46788776 677778888999999998754
No 49
>TIGR00427 membrane protein, MarC family. MarC is a protein that spans the plasma membrane multiple times and once was thought to be a multiple antibiotic resistance protein. The function for this family is unknown.
Probab=37.77 E-value=70 Score=28.28 Aligned_cols=26 Identities=15% Similarity=0.137 Sum_probs=21.1
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHhh
Q 025693 209 QTDLPIDDIAAVCLLVYFGVSTLLDA 234 (249)
Q Consensus 209 ~~~l~il~~iaaiLFl~FGl~tL~ea 234 (249)
.+...++..+.|++...+|+.++.+|
T Consensus 175 ~~g~~il~Ri~GliL~aIaVq~i~~G 200 (201)
T TIGR00427 175 RTGINVITRIMGLLLAAIAVEFIVTG 200 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 33455688999999999999999875
No 50
>COG4280 Predicted membrane protein [Function unknown]
Probab=36.98 E-value=31 Score=31.98 Aligned_cols=67 Identities=24% Similarity=0.178 Sum_probs=47.7
Q ss_pred HHHHHHHHHhccCCc-eeehHHHHHHHHHHHHHHHHhchhhhccccCCccccCCCchhHHHHHHHHHHHHHHHHHHhhh
Q 025693 158 TFFIAALLAARNSAA-TVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDAA 235 (249)
Q Consensus 158 TQLaTalLAaR~~~~-~VflGa~lAL~l~T~LsVl~G~~l~~i~~~LP~r~~~~~l~il~~iaaiLFl~FGl~tL~ea~ 235 (249)
-.++.+.|.+.++.| .-..|+..|.++.-+++.++-+-+ .++|+.. +++.++++...||.+=+-|+.
T Consensus 133 v~~iVialgaa~sqwleAi~gagfA~vlvlvl~~~lh~pl----arvpe~~-------lKfvag~lL~sfGtfWlgegv 200 (236)
T COG4280 133 VSLIVIALGAASSQWLEAIMGAGFASVLVLVLTAILHSPL----ARVPEPH-------LKFVAGALLFSFGTFWLGEGV 200 (236)
T ss_pred eeeeeeeechhhhHHHHHHHHHHHHHHHHHHHHHHhccHH----hhCCchh-------HHHHHHHHHHHhhHHHhcccc
Confidence 345556666666543 566777777777777776666544 4788876 899999999999987776664
No 51
>PRK15071 lipopolysaccharide ABC transporter permease; Provisional
Probab=36.77 E-value=2e+02 Score=26.56 Aligned_cols=76 Identities=13% Similarity=-0.009 Sum_probs=44.7
Q ss_pred hHHHHHHHHHHHHhhcCcHHHHHHHHHHhccCC-----ceeehHHHHHHHH--HHHHHHHHhchhhhccccCCccccCCC
Q 025693 139 SRGFASAFLLIFFSELGDKTFFIAALLAARNSA-----ATVFAGTFGALAA--MTVISVILGRTFHYVDEILPFRFGQTD 211 (249)
Q Consensus 139 ~~aFltAFllIFLAElGDKTQLaTalLAaR~~~-----~~VflGa~lAL~l--~T~LsVl~G~~l~~i~~~LP~r~~~~~ 211 (249)
+.-+...+..+.++ ++++.++.+..+ ..+.+|..++++. ...++-.+|. ...+|+..
T Consensus 272 ~~r~a~Pl~~~~~~-------lla~~~~~~~~R~~~~~~~i~~~i~~~~~y~~~~~~~~~lg~-----~g~l~P~l---- 335 (356)
T PRK15071 272 WRKIFQPLSVAVMM-------LMALSFIFGPLRSVTMGARVVTGISFGFVFYVSNEIFGPLSL-----VYGIPPII---- 335 (356)
T ss_pred HHHHHHHHHHHHHH-------HHHHHHhcCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHH-----hcCccHHH----
Confidence 44455555555555 677777776433 2334443333332 3333334454 24577665
Q ss_pred chhHHHHHHHHHHHHHHHHHHh
Q 025693 212 LPIDDIAAVCLLVYFGVSTLLD 233 (249)
Q Consensus 212 l~il~~iaaiLFl~FGl~tL~e 233 (249)
.-|+--++|+++|+++++.
T Consensus 336 ---aaw~P~iif~~~~~~ll~r 354 (356)
T PRK15071 336 ---GALLPSLLFLGISLYLLRR 354 (356)
T ss_pred ---HHHHHHHHHHHHHHHHHhh
Confidence 6788889999999998874
No 52
>PF11139 DUF2910: Protein of unknown function (DUF2910); InterPro: IPR021315 Some members in this bacterial family annotate the proteins as cytochrome C biogenesis proteins however this cannot be confirmed. Currently no function for this family is known.
Probab=36.72 E-value=1.9e+02 Score=25.12 Aligned_cols=59 Identities=12% Similarity=0.014 Sum_probs=37.4
Q ss_pred ceeehHHHHHHHHHHHHHHHHhchhhhccccCCccccCCCchhHHHHHHHHHHHHHHHHHHhh
Q 025693 172 ATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDA 234 (249)
Q Consensus 172 ~~VflGa~lAL~l~T~LsVl~G~~l~~i~~~LP~r~~~~~l~il~~iaaiLFl~FGl~tL~ea 234 (249)
+..++|..++.+...++.....+.+ .+..... ++.-..+++++.|++++.+|++..+..
T Consensus 32 ~af~~g~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~l~lGv~ll~~a~~~~~~~ 90 (214)
T PF11139_consen 32 LAFLAGWFLGYLAVGLVLLFGLDAL---PSGSSSA-PSPVVGWLQLVLGVLLLLLAVRVWRRR 90 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh---ccccccC-CccHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4556677777776666666666544 2222111 123345678899999999999988765
No 53
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=36.09 E-value=61 Score=31.68 Aligned_cols=83 Identities=23% Similarity=0.193 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHhhcCcHHHHHHHHHHhccCCceeehHHHHHHHHHHHHHHHHhchhhh-ccccCCccccCCCchhHHHH
Q 025693 140 RGFASAFLLIFFSELGDKTFFIAALLAARNSAATVFAGTFGALAAMTVISVILGRTFHY-VDEILPFRFGQTDLPIDDIA 218 (249)
Q Consensus 140 ~aFltAFllIFLAElGDKTQLaTalLAaR~~~~~VflGa~lAL~l~T~LsVl~G~~l~~-i~~~LP~r~~~~~l~il~~i 218 (249)
..+..+++.=++=-+|--|+ .|++|| +.|=+|..+++-++++++.++.-.++- ....+..+ .-. -.+
T Consensus 71 ~~l~~~~l~G~lWGIGgltf----Gl~mry--LGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~----~g~--~vL 138 (344)
T PF06379_consen 71 STLFWTFLFGVLWGIGGLTF----GLAMRY--LGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATP----SGQ--IVL 138 (344)
T ss_pred hHHHHHHHHHHHHhcchhhH----hHHHHH--HhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCC----Cch--hhh
Confidence 35555566666677777554 788888 556666666666666666655433310 01111111 111 245
Q ss_pred HHHHHHHHHHHHHHhh
Q 025693 219 AVCLLVYFGVSTLLDA 234 (249)
Q Consensus 219 aaiLFl~FGl~tL~ea 234 (249)
.+++-.+.|+-..-.|
T Consensus 139 ~Gv~v~LiGIai~g~A 154 (344)
T PF06379_consen 139 LGVAVCLIGIAICGKA 154 (344)
T ss_pred hHHHHHHHHHHHHhHH
Confidence 5555566777655444
No 54
>TIGR00427 membrane protein, MarC family. MarC is a protein that spans the plasma membrane multiple times and once was thought to be a multiple antibiotic resistance protein. The function for this family is unknown.
Probab=35.75 E-value=69 Score=28.33 Aligned_cols=54 Identities=15% Similarity=0.186 Sum_probs=32.8
Q ss_pred ceeehHHHHHHHHHHHHHHHHhchhhhccccCCccccCCCchhHHHHHHHHHHHHHHHHHHhh
Q 025693 172 ATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDA 234 (249)
Q Consensus 172 ~~VflGa~lAL~l~T~LsVl~G~~l~~i~~~LP~r~~~~~l~il~~iaaiLFl~FGl~tL~ea 234 (249)
...+-.+..+.+++- +..++|.++ -+.+ +-+++-.++.+|++.+..|+.|+...
T Consensus 41 ~ia~~~~l~a~~ill-~f~~~G~~i---L~~f-----gIsl~afrIaGGiiL~~ia~~ml~~~ 94 (201)
T TIGR00427 41 KIAKKANISSFIILL-IFLVFGDTI---LKLF-----GISIDAFRIAGGILLFTIAMDMLSGE 94 (201)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHH---HHHh-----CCCHHHHHHHHHHHHHHHHHHHhCCC
Confidence 344445555555544 445556544 1222 12344478999999999999999653
No 55
>COG2917 Intracellular septation protein A [Cell division and chromosome partitioning]
Probab=34.74 E-value=61 Score=29.18 Aligned_cols=47 Identities=19% Similarity=0.121 Sum_probs=32.0
Q ss_pred ehHHHHHHHHHHHHHHHHhchhhhccccCCccccCCCchhHHHHHHHHHHHHHHHHHHh
Q 025693 175 FAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLD 233 (249)
Q Consensus 175 flGa~lAL~l~T~LsVl~G~~l~~i~~~LP~r~~~~~l~il~~iaaiLFl~FGl~tL~e 233 (249)
+-.++..++++|++.+.+..+.. +++ +.++++++++-++||..+++-
T Consensus 22 I~~AT~~livAt~i~l~~~w~~~---rkv---------~km~l~s~~~v~vFG~lTl~f 68 (180)
T COG2917 22 IYAATAVLIVATVIQLAILWIKY---RKV---------EKMQLISGVVVVVFGGLTLIF 68 (180)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---hhh---------HHHHHHHHHHHHHhchhHhhc
Confidence 34556677778888887776542 333 336788888888888888763
No 56
>PF12811 BaxI_1: Bax inhibitor 1 like ; InterPro: IPR010539 Bax inhibitor-1 (BI1) family contains six known genes in human. Some members of BI1 family have been proved to play important roles in cell death [, ].
Probab=34.38 E-value=3e+02 Score=26.08 Aligned_cols=60 Identities=22% Similarity=0.246 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHhhcCcHH--HHHHHHHHhccCCceeehHHHHHH---------------HHHHHHHHHHhchhhhcccc
Q 025693 140 RGFASAFLLIFFSELGDKT--FFIAALLAARNSAATVFAGTFGAL---------------AAMTVISVILGRTFHYVDEI 202 (249)
Q Consensus 140 ~aFltAFllIFLAElGDKT--QLaTalLAaR~~~~~VflGa~lAL---------------~l~T~LsVl~G~~l~~i~~~ 202 (249)
.+.+.+|++.++.-+.-|. -.++...|.-. .||+|++.+. ++...++|+++..+.|-...
T Consensus 93 ~g~i~glvl~lv~~F~~~~~sp~l~~~YA~~E---G~flG~iS~~f~~~~~~~~pGIv~qAvl~T~~vf~~ml~lYk~g~ 169 (274)
T PF12811_consen 93 VGAIGGLVLALVISFKRKVWSPALAPIYAVLE---GVFLGGISAVFENIYYSRYPGIVFQAVLGTFGVFAVMLALYKTGI 169 (274)
T ss_pred HHHHHHHHHHHHHHhCCccCChHHHHHHHHHH---HHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4455667777777776654 45555544433 3555555432 34445556666665553333
No 57
>PF03739 YjgP_YjgQ: Predicted permease YjgP/YjgQ family; InterPro: IPR005495 Members of this family are predicted integral membrane proteins of unknown function. They are about 350 amino acids long, contain about 6 transmembrane regions and may be permeases, although there is no verification of this.; GO: 0016021 integral to membrane
Probab=32.11 E-value=1.2e+02 Score=27.44 Aligned_cols=76 Identities=14% Similarity=0.196 Sum_probs=44.9
Q ss_pred hhHHHHHHHHHHHHhhcCcHHHHHHHHHHhccCCc----eeehHHHHHHH--HHHHHHHHHhchhhhccccCCccccCCC
Q 025693 138 ISRGFASAFLLIFFSELGDKTFFIAALLAARNSAA----TVFAGTFGALA--AMTVISVILGRTFHYVDEILPFRFGQTD 211 (249)
Q Consensus 138 ~~~aFltAFllIFLAElGDKTQLaTalLAaR~~~~----~VflGa~lAL~--l~T~LsVl~G~~l~~i~~~LP~r~~~~~ 211 (249)
+..-+...+..++++ ++++.++.++++. .++.|..++++ .+..++..+|. ...+|.-+
T Consensus 272 l~~R~~~p~~~l~~~-------lla~~l~~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~l~~-----~~~l~p~~---- 335 (354)
T PF03739_consen 272 LHKRIALPLSCLILV-------LLALPLGIRFPRSGRISSLFIALLLGFLYYILFSFFSSLGE-----NGNLPPFI---- 335 (354)
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHhhccccCCchHHHHHHHHHHHHHHHHHHHHHHHHH-----cCCccHHH----
Confidence 445566666666665 5667788886542 33333333333 22222333332 23566655
Q ss_pred chhHHHHHHHHHHHHHHHHHH
Q 025693 212 LPIDDIAAVCLLVYFGVSTLL 232 (249)
Q Consensus 212 l~il~~iaaiLFl~FGl~tL~ 232 (249)
.-|+.-++|+++|+++++
T Consensus 336 ---a~w~p~ii~~~~~~~l~~ 353 (354)
T PF03739_consen 336 ---AAWLPNIIFLILGLYLLR 353 (354)
T ss_pred ---HHHHHHHHHHHHHHHHHh
Confidence 789999999999998876
No 58
>COG0730 Predicted permeases [General function prediction only]
Probab=31.35 E-value=82 Score=27.72 Aligned_cols=45 Identities=18% Similarity=0.188 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHhchhhhccccCCccccCCCchhHHHHHHHHHHHHHHHHHHhhh
Q 025693 181 ALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDAA 235 (249)
Q Consensus 181 AL~l~T~LsVl~G~~l~~i~~~LP~r~~~~~l~il~~iaaiLFl~FGl~tL~ea~ 235 (249)
.+++.+.++..+|.++ ..++|++. .+.+-+.+.++.+++++++..
T Consensus 211 ~l~~g~~~G~~lG~~l---~~~~~~~~-------lr~~~~~~~~~~~~~~~~~~~ 255 (258)
T COG0730 211 LLAVGSILGAYLGARL---ARRLSPKV-------LRRLFALVLLAVAIKLLLRGL 255 (258)
T ss_pred HHHHHHHHHHHHHHHH---HHhcCHHH-------HHHHHHHHHHHHHHHHHHHhc
Confidence 6788888888889865 46788776 788888888999999987654
No 59
>PRK09304 arginine exporter protein; Provisional
Probab=30.23 E-value=3.6e+02 Score=23.23 Aligned_cols=24 Identities=8% Similarity=0.250 Sum_probs=20.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhc
Q 025693 213 PIDDIAAVCLLVYFGVSTLLDAAS 236 (249)
Q Consensus 213 ~il~~iaaiLFl~FGl~tL~ea~~ 236 (249)
++++.++|++|+++|++++.++..
T Consensus 181 ~~in~~~g~~l~~~~~~l~~~~~~ 204 (207)
T PRK09304 181 RIINLFVGCVMWFIALQLARQGIA 204 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhh
Confidence 347889999999999999988754
No 60
>PF03239 FTR1: Iron permease FTR1 family; InterPro: IPR004923 The Saccharomyces cerevisiae (Baker's yeast) iron permease FTR1 is a plasma membrane permease for high-affinity iron uptake. Also included in this family are bacterial hypothetical integral membrane proteins.; GO: 0055085 transmembrane transport, 0016020 membrane
Probab=29.18 E-value=1.4e+02 Score=27.72 Aligned_cols=65 Identities=29% Similarity=0.346 Sum_probs=40.6
Q ss_pred chhHHHHHHHHHHHHhhcCcHHHHHHHHHHhccC--CceeehHHHHHHHHHHHHHHHHhchhhhccccCCccc
Q 025693 137 DISRGFASAFLLIFFSELGDKTFFIAALLAARNS--AATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRF 207 (249)
Q Consensus 137 ~~~~aFltAFllIFLAElGDKTQLaTalLAaR~~--~~~VflGa~lAL~l~T~LsVl~G~~l~~i~~~LP~r~ 207 (249)
+.+..|+.+|+.+ +=| |=-|=+.-..+++..+ ...+..|+.+|+++..+++.++-+.. ..+|.+.
T Consensus 131 ~~~~l~~~afl~v-lRE-G~E~vLfl~a~~~~~~~~~~~~~~g~~~G~~~a~~~~~~~~~~~----~~i~~~~ 197 (306)
T PF03239_consen 131 SKWALFLLAFLIV-LRE-GLEAVLFLAALAASLRKDAASILLGAILGIAAAVVLGWLLYRGL----IRISLRS 197 (306)
T ss_pred hhhHHHHHHHHHH-HHh-hHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHH----HhcChHH
Confidence 3456677777443 333 4445455555555433 57888888888888888887776543 3566654
No 61
>PF01925 TauE: Sulfite exporter TauE/SafE; InterPro: IPR002781 This family is found in integral membrane proteins of prokaryotes which are uncharacterised.; GO: 0016021 integral to membrane
Probab=28.52 E-value=93 Score=26.51 Aligned_cols=45 Identities=16% Similarity=0.135 Sum_probs=31.0
Q ss_pred ehHHHHHHHHHHHHHHHHhchhhhccccCCccccCCCchhHHHHHHHHHHHHHHH
Q 025693 175 FAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVS 229 (249)
Q Consensus 175 flGa~lAL~l~T~LsVl~G~~l~~i~~~LP~r~~~~~l~il~~iaaiLFl~FGl~ 229 (249)
.+...+.+.....+++.+|+.+ .+++|+++ .+.+..++.++.|+.
T Consensus 195 ~~~~~~~~~~~~~~G~~lG~~~---~~~i~~~~-------~~~~~~~ll~~~~~~ 239 (240)
T PF01925_consen 195 MLLLSLILLPGAFLGAFLGAKL---ARKIPQKV-------FRRIFLILLLLSGLK 239 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHhCCHHH-------HHHHHHHHHHHHHHH
Confidence 3344455777778888888765 47788776 677777777777765
No 62
>PF05360 YiaAB: yiaA/B two helix domain; InterPro: IPR008024 This domain consists of two transmembrane helices and a conserved linking section.
Probab=28.48 E-value=1.6e+02 Score=20.95 Aligned_cols=48 Identities=17% Similarity=0.115 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHhchhhhccccCCccccCCCchhHHHHHHHHHHHHHHHHHHhh
Q 025693 177 GTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDA 234 (249)
Q Consensus 177 Ga~lAL~l~T~LsVl~G~~l~~i~~~LP~r~~~~~l~il~~iaaiLFl~FGl~tL~ea 234 (249)
+..-+.++.++....+|-+- .+--+.+| -.++.+.+|.+|+..++-+.
T Consensus 3 ~~~~~~f~i~~~~~~iGl~~--~~~~l~~K--------Gy~~~~~l~~l~s~~tl~K~ 50 (53)
T PF05360_consen 3 GQSWISFGISIVLMLIGLWN--APLDLSEK--------GYYAMGLLFLLFSAFTLQKT 50 (53)
T ss_pred hHHHHHHHHHHHHHHHHHHh--CCCCHHHH--------HHHHHHHHHHHHHHHhhhhh
Confidence 33444455566666667542 22222233 46889999999999988654
No 63
>COG2215 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=28.18 E-value=1.4e+02 Score=28.82 Aligned_cols=23 Identities=17% Similarity=0.258 Sum_probs=20.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhc
Q 025693 214 IDDIAAVCLLVYFGVSTLLDAAS 236 (249)
Q Consensus 214 il~~iaaiLFl~FGl~tL~ea~~ 236 (249)
.+..++.++-+.+|+|++|....
T Consensus 132 ~lE~~S~~Ll~~~G~w~~~r~lr 154 (303)
T COG2215 132 WLELISFLLLILLGLWLLWRTLR 154 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 38999999999999999998855
No 64
>PF06724 DUF1206: Domain of Unknown Function (DUF1206); InterPro: IPR009597 This region consists of two a pair of transmembrane helices and occurs three times in each of the family member proteins.
Probab=26.97 E-value=82 Score=23.05 Aligned_cols=23 Identities=17% Similarity=0.004 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcC
Q 025693 215 DDIAAVCLLVYFGVSTLLDAAST 237 (249)
Q Consensus 215 l~~iaaiLFl~FGl~tL~ea~~~ 237 (249)
+-++.++.++.+|+|.+++++..
T Consensus 49 ll~~vg~gli~~gi~~~~~a~~~ 71 (73)
T PF06724_consen 49 LLGAVGLGLIGYGIWQFVKAVYR 71 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 45778888999999999998754
No 65
>PRK11111 hypothetical protein; Provisional
Probab=26.97 E-value=44 Score=29.94 Aligned_cols=52 Identities=19% Similarity=0.224 Sum_probs=32.2
Q ss_pred eeehHHHHHHHHHHHHHHHHhchhhhccccCCccccCCCchhHHHHHHHHHHHHHHHHHHh
Q 025693 173 TVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLD 233 (249)
Q Consensus 173 ~VflGa~lAL~l~T~LsVl~G~~l~~i~~~LP~r~~~~~l~il~~iaaiLFl~FGl~tL~e 233 (249)
..+-.+..+.+++. +..++|+++ -+.+ .=+++-.++++|++.+.+|+.|+..
T Consensus 45 ia~~a~l~a~~ill-~f~~~G~~i---L~~f-----GIsl~afrIaGGiiL~~ial~Ml~g 96 (214)
T PRK11111 45 TNLTANLSVAIILL-ISLFLGDFI---LNLF-----GISIDSFRIAGGILVVTIAMSMISG 96 (214)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHH---HHHh-----CCCHHHHHHHHHHHHHHHHHHHhCC
Confidence 33444444544444 556777755 1222 1133447899999999999999964
No 66
>TIGR00949 2A76 The Resistance to Homoserine/Threonine (RhtB) Family protein.
Probab=26.47 E-value=2e+02 Score=23.79 Aligned_cols=18 Identities=28% Similarity=0.217 Sum_probs=14.1
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 025693 213 PIDDIAAVCLLVYFGVST 230 (249)
Q Consensus 213 ~il~~iaaiLFl~FGl~t 230 (249)
++++.++|++++++|+++
T Consensus 168 ~~in~~~g~~l~~~~v~~ 185 (185)
T TIGR00949 168 KWIDGITGALFVGFGIRL 185 (185)
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 346788999999999863
No 67
>KOG3415 consensus Putative Rab5-interacting protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.45 E-value=1.5e+02 Score=25.34 Aligned_cols=17 Identities=24% Similarity=0.278 Sum_probs=13.7
Q ss_pred hhcCcHHHHHHHHHHhc
Q 025693 152 SELGDKTFFIAALLAAR 168 (249)
Q Consensus 152 AElGDKTQLaTalLAaR 168 (249)
|||-||-||.-++.=.|
T Consensus 33 a~W~DKdellDViyW~r 49 (129)
T KOG3415|consen 33 AEWPDKDELLDVIYWIR 49 (129)
T ss_pred ccCCCHHHHHHHHHHHH
Confidence 79999999988776444
No 68
>PRK10621 hypothetical protein; Provisional
Probab=26.32 E-value=1.3e+02 Score=26.89 Aligned_cols=51 Identities=18% Similarity=0.081 Sum_probs=38.1
Q ss_pred eeehHHHHHHHHHHHHHHHHhchhhhccccCCccccCCCchhHHHHHHHHHHHHHHHHHHh
Q 025693 173 TVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLD 233 (249)
Q Consensus 173 ~VflGa~lAL~l~T~LsVl~G~~l~~i~~~LP~r~~~~~l~il~~iaaiLFl~FGl~tL~e 233 (249)
.|=.-...-+.+..++++.+|.++ ...+|++. .+++-+++.++.++++++.
T Consensus 74 ~v~~~~~~~l~~~~l~Ga~~G~~l---~~~l~~~~-------l~~~~~~~ll~~~~~~l~~ 124 (266)
T PRK10621 74 VVNLADQKLNIAMTFVGSMSGALL---VQYVQADI-------LRQILPILVIGIGLYFLLM 124 (266)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHH---HHhCCHHH-------HHHHHHHHHHHHHHHHHHC
Confidence 444556666777888889999765 46788876 7777778888888888764
No 69
>PF11364 DUF3165: Protein of unknown function (DUF3165); InterPro: IPR021506 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=26.22 E-value=3.1e+02 Score=21.92 Aligned_cols=49 Identities=24% Similarity=0.324 Sum_probs=31.5
Q ss_pred eehHHHHHHHHHHHHHHHHhchhhhccccCCccccCCCchhHHHHHHHHHHHHHHHHHHhhhcCCC
Q 025693 174 VFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDAASTDG 239 (249)
Q Consensus 174 VflGa~lAL~l~T~LsVl~G~~l~~i~~~LP~r~~~~~l~il~~iaaiLFl~FGl~tL~ea~~~~~ 239 (249)
.++|..+++++..+++++ +.+ .+|. .+..++..++.|.+.++|-..+++
T Consensus 30 ~~v~~~vlLivla~ls~~--ki~-----q~P~----------Eifv~~~Mi~l~y~alrDi~~l~~ 78 (81)
T PF11364_consen 30 GLVGLVVLLIVLAVLSFI--KIF-----QLPP----------EIFVGLAMIVLGYFALRDISKLST 78 (81)
T ss_pred HHHHHHHHHHHHHHHHHH--HHH-----hCCH----------HHHHHHHHHHHHHHHHHHHHhCCc
Confidence 345555555555555554 222 2443 467788889999999999877554
No 70
>PRK10019 nickel/cobalt efflux protein RcnA; Provisional
Probab=25.80 E-value=3.3e+02 Score=25.72 Aligned_cols=74 Identities=15% Similarity=0.040 Sum_probs=45.4
Q ss_pred HHHHHHhhcCcHHHHHHHHHHhccCCceeehHHHHHHHHHHHHHHHHhchhhhccccCC--ccccCCCchhHH---HHHH
Q 025693 146 FLLIFFSELGDKTFFIAALLAARNSAATVFAGTFGALAAMTVISVILGRTFHYVDEILP--FRFGQTDLPIDD---IAAV 220 (249)
Q Consensus 146 FllIFLAElGDKTQLaTalLAaR~~~~~VflGa~lAL~l~T~LsVl~G~~l~~i~~~LP--~r~~~~~l~il~---~iaa 220 (249)
+++++..-+|+=+.=++.++++- +|+.+.+.+...+.+.-.+.. .++.+ .++ .+ ++++
T Consensus 197 ~VLL~a~~lg~~~~Gi~~vlafs-------lGtaltm~~vgll~~~~~r~~---~~~~~~~~~~-------~~~~p~~s~ 259 (279)
T PRK10019 197 TVLLICIQLKALTLGATLVLSFS-------IGLALTLVTVGVGAAISVQQA---AKRWSGFNTL-------ARRAPYFSS 259 (279)
T ss_pred HHHHHHHHhchHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH---HHHHhhHHHH-------HHHHHHHHH
Confidence 44666667777666666666654 466666666666654333311 12222 222 34 8899
Q ss_pred HHHHHHHHHHHHhhhc
Q 025693 221 CLLVYFGVSTLLDAAS 236 (249)
Q Consensus 221 iLFl~FGl~tL~ea~~ 236 (249)
++=+++|+++.|+++.
T Consensus 260 ~l~i~~G~~~~~~~~~ 275 (279)
T PRK10019 260 LLIGLVGVYMGVHGFM 275 (279)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999998754
No 71
>PF01925 TauE: Sulfite exporter TauE/SafE; InterPro: IPR002781 This family is found in integral membrane proteins of prokaryotes which are uncharacterised.; GO: 0016021 integral to membrane
Probab=25.75 E-value=1e+02 Score=26.32 Aligned_cols=48 Identities=19% Similarity=0.220 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHhchhhhccccCCccccCCCchhHHHHHHHHHHHHHHHHHHhhh
Q 025693 178 TFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDAA 235 (249)
Q Consensus 178 a~lAL~l~T~LsVl~G~~l~~i~~~LP~r~~~~~l~il~~iaaiLFl~FGl~tL~ea~ 235 (249)
...-+.+..++++.+|.++ ...+|++. .+++-+++.+++++++++...
T Consensus 65 ~~~~~~~~~~~g~~iG~~l---~~~l~~~~-------l~~~~~~~ll~~~~~~~~~~~ 112 (240)
T PF01925_consen 65 IVLPLIIGALIGVVIGAWL---LSLLPDDI-------LKLIFGLFLLLLAIYMLLKKR 112 (240)
T ss_pred hhhhhhhHhHHHHHHHHhh---hcchhHHH-------HHHHHHHHHHHHHHHHHhccc
Confidence 3455667777888888755 45778776 788888888999999988543
No 72
>COG2095 MarC Multiple antibiotic transporter [Intracellular trafficking and secretion]
Probab=25.65 E-value=1.9e+02 Score=25.90 Aligned_cols=75 Identities=17% Similarity=0.157 Sum_probs=44.6
Q ss_pred CcHHHHHHHHHHhccCC-ceeehHHHHHHHHHHHHHHHHhchhhhccccCCccccCCCchhHHHHHHHHHHHHHHHHHHh
Q 025693 155 GDKTFFIAALLAARNSA-ATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLD 233 (249)
Q Consensus 155 GDKTQLaTalLAaR~~~-~~VflGa~lAL~l~T~LsVl~G~~l~~i~~~LP~r~~~~~l~il~~iaaiLFl~FGl~tL~e 233 (249)
|+-|-=+++.++.+++. ..+.+++++...+.+.+.-..... +-+..|.+.+.++..+.|++...+|+.++.+
T Consensus 122 GPg~Ist~i~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~s~~-------i~r~lG~~G~~~~~RimGllL~al~vq~i~~ 194 (203)
T COG2095 122 GPGTIATVIVLSSQYGNSKLAVVLAILLASLLTYLILLSSSR-------IMRLLGKTGLNALTRIMGLLLAALGVQMILD 194 (203)
T ss_pred CcHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555566777777661 233333333333333333333322 2223355566678899999999999999998
Q ss_pred hhc
Q 025693 234 AAS 236 (249)
Q Consensus 234 a~~ 236 (249)
+.+
T Consensus 195 Gl~ 197 (203)
T COG2095 195 GLR 197 (203)
T ss_pred HHH
Confidence 754
No 73
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=25.20 E-value=1.1e+02 Score=31.03 Aligned_cols=47 Identities=19% Similarity=0.258 Sum_probs=30.3
Q ss_pred ehHHHHHHHHHHHHHHHHhchhhhccccCCccccCCCchhHHHHHHHHHHHHHHHHH
Q 025693 175 FAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTL 231 (249)
Q Consensus 175 flGa~lAL~l~T~LsVl~G~~l~~i~~~LP~r~~~~~l~il~~iaaiLFl~FGl~tL 231 (249)
.+|.++.+.+..+++.++|..++ ..+ +.|...++.+++|++||+.++
T Consensus 216 ~lG~~~ty~~lG~~a~~~G~~~~---~~~-------q~~~~~~~~~~l~v~lgL~~~ 262 (571)
T PRK00293 216 VQGMALTYTLLGLVVAAAGLQFQ---AAL-------QHPYVLIGLSILFVLLALSMF 262 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHh-------hhHHHHHHHHHHHHHHHHHHh
Confidence 45666666666666667776542 111 112256788899999999885
No 74
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=25.20 E-value=2.9e+02 Score=25.39 Aligned_cols=62 Identities=19% Similarity=0.193 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhhcCcHHHHHHHHHHhc-cC--CceeehHHHHHHHHHHHHHHHHhchhhhccccCCccc
Q 025693 142 FASAFLLIFFSELGDKTFFIAALLAAR-NS--AATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRF 207 (249)
Q Consensus 142 FltAFllIFLAElGDKTQLaTalLAaR-~~--~~~VflGa~lAL~l~T~LsVl~G~~l~~i~~~LP~r~ 207 (249)
|..-++..+++.+||.+...++..-.+ .+ ...+-.....-.+...+...+.|.. .+++.+|.
T Consensus 5 f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~l----aDr~grr~ 69 (393)
T PRK11195 5 FYAIMAAQFFSALADNALLFAAIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAF----ADSFPKGR 69 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHh----hhccCCch
Confidence 444556677788888776555544333 21 2222222223333444445555643 45665554
No 75
>PF04279 IspA: Intracellular septation protein A ; InterPro: IPR006008 Intracellular septation protein A is a family of proteins which are essential for both normal cell division and bacterial virulence and are believed to play a role in the septation process [].; GO: 0016021 integral to membrane
Probab=24.47 E-value=2e+02 Score=24.93 Aligned_cols=44 Identities=23% Similarity=0.207 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHhchhhhccccCCccccCCCchhHHHHHHHHHHHHHHHHHHh
Q 025693 178 TFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLD 233 (249)
Q Consensus 178 a~lAL~l~T~LsVl~G~~l~~i~~~LP~r~~~~~l~il~~iaaiLFl~FGl~tL~e 233 (249)
++.++++.+++.++..... .+++| .++++++++-++||..+++-
T Consensus 25 At~~~i~~~~~~v~~~~~~---~r~v~---------~~~~is~~lv~vfG~lTl~~ 68 (176)
T PF04279_consen 25 ATAVLIVATLAQVAYSWIR---RRKVP---------KMQWISLVLVLVFGGLTLLF 68 (176)
T ss_pred HHHHHHHHHHHHHHHHHHH---hCcCc---------hhHHHHHHHHHHHHHHHHHh
Confidence 4445555666666665543 24443 26789999999999888873
No 76
>PRK04201 zinc transporter ZupT; Provisional
Probab=24.21 E-value=4e+02 Score=24.11 Aligned_cols=84 Identities=13% Similarity=0.085 Sum_probs=50.1
Q ss_pred HHHHHHHHHhhcCcHHHHHHHHHHhccCCceeehHHHHHHHHHHHHHHHHhchhhhccccCCccccCCCchhHHHHHHHH
Q 025693 143 ASAFLLIFFSELGDKTFFIAALLAARNSAATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCL 222 (249)
Q Consensus 143 ltAFllIFLAElGDKTQLaTalLAaR~~~~~VflGa~lAL~l~T~LsVl~G~~l~~i~~~LP~r~~~~~l~il~~iaaiL 222 (249)
+..++.|.+-|+-+-==+++.++.++.+++..+.- .....+++.+++++|..+. ...++..+ ..++.-+++..
T Consensus 152 ~~~~~aI~~H~iPeg~a~~~~l~~~~~s~~~~~~~-~~~~~l~~p~G~~~g~~~~--~~~~~~~~----~~~~l~~aaG~ 224 (265)
T PRK04201 152 FPIALAIAIHNIPEGIAVAVPVYYATGSKKKAFLY-SFLSGLAEPLGAVLGYLLL--GPFISPVV----MGAIFAAVAGI 224 (265)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHccCcHHHHHHH-HHHHHHHHHHHHHHHHHHH--ccccchhH----HHHHHHHHHHH
Confidence 56677788888877665666666666666544433 3345677888888886541 11122221 22345667777
Q ss_pred HHHHHHHHHHh
Q 025693 223 LVYFGVSTLLD 233 (249)
Q Consensus 223 Fl~FGl~tL~e 233 (249)
|++.++--+..
T Consensus 225 ~lyv~~~el~p 235 (265)
T PRK04201 225 MVFISLDELLP 235 (265)
T ss_pred HHHHHHHHHHH
Confidence 77777665543
No 77
>COG2095 MarC Multiple antibiotic transporter [Intracellular trafficking and secretion]
Probab=24.09 E-value=1.6e+02 Score=26.43 Aligned_cols=60 Identities=20% Similarity=0.282 Sum_probs=35.2
Q ss_pred ceeehHHHHHHHHHHHHHHHHhchh-hhccccCCccccCCCchhHHHHHHHHHHHHHHHHHHhhhcCCCCC
Q 025693 172 ATVFAGTFGALAAMTVISVILGRTF-HYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDAASTDGLK 241 (249)
Q Consensus 172 ~~VflGa~lAL~l~T~LsVl~G~~l-~~i~~~LP~r~~~~~l~il~~iaaiLFl~FGl~tL~ea~~~~~~~ 241 (249)
..++-.+..|+.++-+. .++|+.+ .+.+ ++. +-.++++|++.+..|+.|+....+.++++
T Consensus 41 ~v~~ra~i~a~~ill~f-~~~G~~il~~fg--Isi-------~a~rIAGGilLf~ia~~ml~~~~~~~~~~ 101 (203)
T COG2095 41 RVALRASIIALLILLVF-LLLGEGILRFFG--ISI-------DAFRIAGGILLFLIALRMLFGPTSRPKKK 101 (203)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHhC--Cch-------hHHHHhhhHHHHHHHHHHhcCCcCcCCCC
Confidence 34445555555554443 3445443 2111 222 22678999999999999998766544433
No 78
>PF02683 DsbD: Cytochrome C biogenesis protein transmembrane region; InterPro: IPR003834 DsbA and DsbC, periplasmic proteins of Escherichia coli, are two key players involved in disulphide bond formation. DsbD generates a reducing source in the periplasm, which is required for maintaining proper redox conditions []. DipZ is essential for maintaining cytochrome c apoproteins in the correct conformations for the covalent attachment of haem groups to the appropriate pairs of cysteine residues [].; GO: 0017004 cytochrome complex assembly, 0055114 oxidation-reduction process, 0016020 membrane
Probab=23.59 E-value=1.8e+02 Score=25.08 Aligned_cols=47 Identities=30% Similarity=0.270 Sum_probs=32.4
Q ss_pred eehHHHHHHHHHHHHHHHHhchhhhccccCCccccCCCchhHHHHHHHHHHHHHHHHHH
Q 025693 174 VFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLL 232 (249)
Q Consensus 174 VflGa~lAL~l~T~LsVl~G~~l~~i~~~LP~r~~~~~l~il~~iaaiLFl~FGl~tL~ 232 (249)
..+|..+.+.+.......+|+.+. .. ..+ ..++++++++++|+.++.
T Consensus 47 f~~G~~~~~~~lG~~~~~~g~~~~---~~--~~~-------~~~i~g~~~i~~Gl~~l~ 93 (211)
T PF02683_consen 47 FVLGFALVFALLGLGAGALGSFFG---QI--SPW-------LYIIAGVLLILFGLSLLG 93 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HH--HHH-------HHHHHHHHHHHHHHHHHH
Confidence 446777777777777777777652 11 122 678899999999998773
No 79
>PF14007 YtpI: YtpI-like protein
Probab=22.96 E-value=2.1e+02 Score=22.87 Aligned_cols=22 Identities=9% Similarity=0.227 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhc
Q 025693 215 DDIAAVCLLVYFGVSTLLDAAS 236 (249)
Q Consensus 215 l~~iaaiLFl~FGl~tL~ea~~ 236 (249)
+.++-+++|+++|+..++.+++
T Consensus 58 ~~~iV~~ifl~lG~~n~~~G~r 79 (89)
T PF14007_consen 58 VRLIVGAIFLVLGLFNLFAGIR 79 (89)
T ss_pred HHHHHHHHHHHHhHHHHHHHHH
Confidence 5788899999999999988754
No 80
>PRK01637 hypothetical protein; Reviewed
Probab=22.48 E-value=1.8e+02 Score=26.44 Aligned_cols=26 Identities=8% Similarity=-0.051 Sum_probs=22.9
Q ss_pred CceeehHHHHHHHHHHHHHHHHhchh
Q 025693 171 AATVFAGTFGALAAMTVISVILGRTF 196 (249)
Q Consensus 171 ~~~VflGa~lAL~l~T~LsVl~G~~l 196 (249)
...++.|+..+.+++.++..+++..+
T Consensus 201 ~r~~~~Ga~~a~~~w~~~~~~f~~Yv 226 (286)
T PRK01637 201 FRHALVGALVAALLFELGKKGFALYI 226 (286)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35899999999999999999998755
No 81
>COG0795 Predicted permeases [General function prediction only]
Probab=22.38 E-value=2.5e+02 Score=26.03 Aligned_cols=79 Identities=19% Similarity=0.193 Sum_probs=44.0
Q ss_pred hHHHHHHHHHHHHhhcCcHHHHHHHHHHhccCC----ceeehHHHHHHHHHHHHHHHHhchhhhccccCCccccCCCchh
Q 025693 139 SRGFASAFLLIFFSELGDKTFFIAALLAARNSA----ATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPI 214 (249)
Q Consensus 139 ~~aFltAFllIFLAElGDKTQLaTalLAaR~~~----~~VflGa~lAL~l~T~LsVl~G~~l~~i~~~LP~r~~~~~l~i 214 (249)
+.-+...|.++.++ ++++.++.++++ ....+++++.-++--++..+.+... ....+|.-.
T Consensus 278 ~~r~a~pl~~~~~~-------lla~~l~~~~~R~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~l~p~~------- 341 (364)
T COG0795 278 YRRLALPLLVLAMA-------LLALPLSLRNPRSGRLGLRLLGGILLGLLFYVLLFLLGALA--LAGKLPPFL------- 341 (364)
T ss_pred HHHHHHHHHHHHHH-------HHHHHHhhcCccccchhHHHHHHHHHHHHHHHHHHHHHHHH--HcCCcCHHH-------
Confidence 34455555555554 667788887664 2222222222222223333333322 234566555
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 025693 215 DDIAAVCLLVYFGVSTLLD 233 (249)
Q Consensus 215 l~~iaaiLFl~FGl~tL~e 233 (249)
.-|+-.++|++.|+|.++.
T Consensus 342 a~~~p~~i~l~~~~~l~~~ 360 (364)
T COG0795 342 AAWLPNLVFLALGLWLLRR 360 (364)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 6788889999999999874
No 82
>PF04306 DUF456: Protein of unknown function (DUF456); InterPro: IPR007403 This is a family of putative membrane proteins.
Probab=21.73 E-value=3.6e+02 Score=22.60 Aligned_cols=89 Identities=21% Similarity=0.228 Sum_probs=51.9
Q ss_pred hHHHHHHHHHHHHhhcCcHHHHHHHHHHhccC--C---ceeehHHHHHHHHHHHHHHHHhchh-hhccccCCccccCCCc
Q 025693 139 SRGFASAFLLIFFSELGDKTFFIAALLAARNS--A---ATVFAGTFGALAAMTVISVILGRTF-HYVDEILPFRFGQTDL 212 (249)
Q Consensus 139 ~~aFltAFllIFLAElGDKTQLaTalLAaR~~--~---~~VflGa~lAL~l~T~LsVl~G~~l-~~i~~~LP~r~~~~~l 212 (249)
+.-+....++..++|..| .++...-+-||+ + +.-.+|++++.++...++.++|-.+ .++.|++ ...|.
T Consensus 30 ~~~l~~~~~l~~l~~~~d--~~~~~~~ak~~G~s~~~~~ga~iG~IvG~f~~~p~G~iiG~~~Ga~l~El~----~~~~~ 103 (140)
T PF04306_consen 30 WWFLAILAVLALLGEVLD--YLAGAYGAKRFGASRWGIWGAIIGGIVGFFVLPPLGLIIGPFLGAFLGELL----RGKDF 103 (140)
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH----hCCCH
Confidence 456667777777888877 355555555676 2 3455666677777666666666554 2334443 23344
Q ss_pred hhHHHHHHHHHHHHHHHHHHh
Q 025693 213 PIDDIAAVCLLVYFGVSTLLD 233 (249)
Q Consensus 213 ~il~~iaaiLFl~FGl~tL~e 233 (249)
+-.-..+...++.+..-++.+
T Consensus 104 ~~A~~~~~ga~~g~~~g~~~k 124 (140)
T PF04306_consen 104 RRALRAGIGALVGFLAGTLIK 124 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333445555566666665554
No 83
>PF14143 YrhC: YrhC-like protein
Probab=21.50 E-value=59 Score=25.13 Aligned_cols=38 Identities=11% Similarity=0.230 Sum_probs=23.3
Q ss_pred hccccCCc-cccCCCchhHHHHHHHHHHHHHHHHHHhhhc
Q 025693 198 YVDEILPF-RFGQTDLPIDDIAAVCLLVYFGVSTLLDAAS 236 (249)
Q Consensus 198 ~i~~~LP~-r~~~~~l~il~~iaaiLFl~FGl~tL~ea~~ 236 (249)
|++.+||. ..+..+.+ .-..+.++|+.+++.-.+.+..
T Consensus 25 YiG~viP~~~~~~~~~~-~m~~~~~~~l~~a~~f~~rs~~ 63 (72)
T PF14143_consen 25 YIGTVIPIGAKETAQKY-IMMGAICIFLAGAFLFFRRSKK 63 (72)
T ss_pred HHHhhCCccchhHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 67788883 33222333 3566677777777777776644
No 84
>COG1280 RhtB Putative threonine efflux protein [Amino acid transport and metabolism]
Probab=21.23 E-value=2e+02 Score=25.04 Aligned_cols=21 Identities=33% Similarity=0.295 Sum_probs=18.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHh
Q 025693 213 PIDDIAAVCLLVYFGVSTLLD 233 (249)
Q Consensus 213 ~il~~iaaiLFl~FGl~tL~e 233 (249)
++.+++.|++|+.+|++++++
T Consensus 186 ~~~~~~~G~~li~~g~~l~~~ 206 (208)
T COG1280 186 RIINRLFGVLLIGFGVKLALS 206 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 458999999999999999875
No 85
>COG1238 Predicted membrane protein [Function unknown]
Probab=21.15 E-value=4.7e+02 Score=22.78 Aligned_cols=92 Identities=18% Similarity=0.089 Sum_probs=59.7
Q ss_pred hHHHHHHHHHHHHhhcCcHHHHHHHHHHhccCCceeehHHHHHHHHHHHHHHHHhchhhhccccCCccccCCCchhHHHH
Q 025693 139 SRGFASAFLLIFFSELGDKTFFIAALLAARNSAATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIA 218 (249)
Q Consensus 139 ~~aFltAFllIFLAElGDKTQLaTalLAaR~~~~~VflGa~lAL~l~T~LsVl~G~~l~~i~~~LP~r~~~~~l~il~~i 218 (249)
...|+.+|+--.+-=++---.++.+.++- ++++.+.+=+++|-.+-++++-++|+.+ .+.+..+.-.......+..
T Consensus 20 ~~Lf~vaF~eat~lP~~sE~~l~~m~~~~-~~~~~~~~vAt~gs~lG~~~~y~lG~~~---~~~~~~~~~~~~~~~~~~~ 95 (161)
T COG1238 20 AGLFIVAFLEATLLPVPSEVLLAPMLLLG-LNAWILALVATLGSVLGGLVNYALGRFL---PEFIARRWFPGSEEALEKL 95 (161)
T ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHcC-CchHHHHHHHHHHhhHhHHHHHHHHhcc---hHHHHHHhhcchHHHHHHH
Confidence 35666777766666777778888888888 8888888888888888888888888865 3444332100011123444
Q ss_pred HHHHHHHHHHHHHHhh
Q 025693 219 AVCLLVYFGVSTLLDA 234 (249)
Q Consensus 219 aaiLFl~FGl~tL~ea 234 (249)
..-.|-=+|+|++.-+
T Consensus 96 ~~~~~~ryg~~~ll~s 111 (161)
T COG1238 96 QEKWYRRYGVWTLLLS 111 (161)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4445566666666543
No 86
>PRK10958 leucine export protein LeuE; Provisional
Probab=20.92 E-value=3.8e+02 Score=23.23 Aligned_cols=19 Identities=16% Similarity=0.065 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 025693 215 DDIAAVCLLVYFGVSTLLD 233 (249)
Q Consensus 215 l~~iaaiLFl~FGl~tL~e 233 (249)
++++.|++|+.+|++++.+
T Consensus 192 i~~~~g~~l~~~~i~l~~~ 210 (212)
T PRK10958 192 GNSLVGLLFVGFAAKLATA 210 (212)
T ss_pred HHHHHHHHHHHHHHHHhcc
Confidence 6888999999999998753
No 87
>COG1279 Lysine efflux permease [General function prediction only]
Probab=20.86 E-value=2.5e+02 Score=25.70 Aligned_cols=68 Identities=18% Similarity=0.139 Sum_probs=44.2
Q ss_pred HHHHHHHHHhccC---CceeehHHHHHHHHHHHHHHHHhchhhhccccC--CccccCCCchhHHHHHHHHHHHHHHHHHH
Q 025693 158 TFFIAALLAARNS---AATVFAGTFGALAAMTVISVILGRTFHYVDEIL--PFRFGQTDLPIDDIAAVCLLVYFGVSTLL 232 (249)
Q Consensus 158 TQLaTalLAaR~~---~~~VflGa~lAL~l~T~LsVl~G~~l~~i~~~L--P~r~~~~~l~il~~iaaiLFl~FGl~tL~ 232 (249)
|-++--.++++|+ +|..-+|++.|=++.=..=.+.++++. +.. |.. .++++.+.+++....|+.+.+
T Consensus 129 tvvliGs~~~~~~~~~k~~F~~Ga~~aS~~WF~~L~~~a~~l~---~~~~~pk~-----~riin~vva~vM~~ia~~L~~ 200 (202)
T COG1279 129 TVVLIGSLAAQLSDEAKWFFALGAISASFLWFFLLALGARWLS---PLLANPKA-----WRIINLVVAVVMWALAVKLAV 200 (202)
T ss_pred hHhhhhhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHc---hhccCcHH-----HHHHHHHHHHHHHHHHHHHhh
Confidence 4445556777876 466777777776665544445555542 222 332 467899999999999998776
Q ss_pred h
Q 025693 233 D 233 (249)
Q Consensus 233 e 233 (249)
+
T Consensus 201 ~ 201 (202)
T COG1279 201 Q 201 (202)
T ss_pred c
Confidence 4
No 88
>PRK15120 lipopolysaccharide ABC transporter permease LptF; Provisional
Probab=20.81 E-value=3.6e+02 Score=25.14 Aligned_cols=63 Identities=11% Similarity=-0.009 Sum_probs=34.7
Q ss_pred HHHHHHHhccCCc----eeehHHHHHHHHHHHHHHHHhchhhhccccCCccccCCCchhHHHHHHHHHHHHHHHHHH
Q 025693 160 FIAALLAARNSAA----TVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLL 232 (249)
Q Consensus 160 LaTalLAaR~~~~----~VflGa~lAL~l~T~LsVl~G~~l~~i~~~LP~r~~~~~l~il~~iaaiLFl~FGl~tL~ 232 (249)
++++.|+.+.++- .+++|..++++--.+ -.+++.+. ....+|... .-|+--++|++.|+++++
T Consensus 281 llavpl~~~~~R~g~~~~i~~~i~~~~~y~~l-~~~~~~l~--~~g~lpp~l-------a~Wlp~i~~~~~~~~l~~ 347 (366)
T PRK15120 281 LMVVPLSVVNPRQGRVLSMLPAMLLYLIFFLL-QTSLRSNG--GKGKLDPMI-------WMWAVNLIYLALAIVLNL 347 (366)
T ss_pred HHHhhhcccCCccccchhHHHHHHHHHHHHHH-HHHHHHHH--HCCCCChHH-------HHHHHHHHHHHHHHHHHh
Confidence 3467777775543 344443333322211 11112211 134677665 678888999999999884
No 89
>TIGR02840 spore_YtaF putative sporulation protein YtaF. This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein.
Probab=20.74 E-value=1.9e+02 Score=25.50 Aligned_cols=38 Identities=18% Similarity=0.270 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHhchhhhccccC-CccccCCCchhHHHHHHHHHHHHHHH
Q 025693 181 ALAAMTVISVILGRTFHYVDEIL-PFRFGQTDLPIDDIAAVCLLVYFGVS 229 (249)
Q Consensus 181 AL~l~T~LsVl~G~~l~~i~~~L-P~r~~~~~l~il~~iaaiLFl~FGl~ 229 (249)
--++++.+++.+|+.+. +.. -.++ . +++|++++++|++
T Consensus 166 vs~i~~~~G~~lG~~~~---~~~~~g~~-------a-~igGliLI~iG~~ 204 (206)
T TIGR02840 166 MSFIFVSLGLFLGKKIS---KKSIIGKF-------S-FLSGILLILLGVW 204 (206)
T ss_pred HHHHHHHHHHHHHHHHh---hhhhccch-------H-HHHHHHHHHHHHh
Confidence 33455666666776542 221 2333 4 8999999999986
No 90
>PF13386 DsbD_2: Cytochrome C biogenesis protein transmembrane region
Probab=20.16 E-value=1.5e+02 Score=25.27 Aligned_cols=42 Identities=26% Similarity=0.204 Sum_probs=26.4
Q ss_pred eeehHHHHHHHHHHHHHHHHhchhhhccccCCccccCCCchhHHHHHHHHHHHHHHH
Q 025693 173 TVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVS 229 (249)
Q Consensus 173 ~VflGa~lAL~l~T~LsVl~G~~l~~i~~~LP~r~~~~~l~il~~iaaiLFl~FGl~ 229 (249)
...+|+..+++++..++..+++.+ ..+ ...+++++++++|+|
T Consensus 158 ~FgLGT~p~ll~~~~~~~~l~~~~-------~~~--------~~r~~g~~~i~~G~~ 199 (199)
T PF13386_consen 158 AFGLGTLPALLLAGLLAGKLSRRL-------RRR--------LLRLAGVLLIILGIY 199 (199)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHH-------HHH--------HHHHHHHHHHHHHHC
Confidence 445666666666666665555433 223 345888888999985
No 91
>KOG1397 consensus Ca2+/H+ antiporter VCX1 and related proteins [Inorganic ion transport and metabolism]
Probab=20.09 E-value=1.7e+02 Score=29.69 Aligned_cols=19 Identities=26% Similarity=0.413 Sum_probs=12.0
Q ss_pred cCcHHHHHHHHHHhccCCc
Q 025693 154 LGDKTFFIAALLAARNSAA 172 (249)
Q Consensus 154 lGDKTQLaTalLAaR~~~~ 172 (249)
+|.-|-++...+|-|.+..
T Consensus 136 fGnaiElii~ilALk~g~~ 154 (441)
T KOG1397|consen 136 FGNAIELIIYILALKNGKV 154 (441)
T ss_pred hccHHHHHHHHHHhhcCce
Confidence 4666666666666666543
Done!