Query 025693
Match_columns 249
No_of_seqs 151 out of 1128
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 15:33:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025693.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025693hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lx0_A Membrane fusion protein 32.3 46 0.0016 21.1 3.1 17 216-232 11-27 (32)
2 2i68_A Protein EMRE; transmemb 29.3 1.3E+02 0.0046 23.8 6.4 16 218-233 88-103 (137)
3 2knc_A Integrin alpha-IIB; tra 22.4 97 0.0033 21.7 3.7 19 215-233 17-35 (54)
4 1p7a_A BF3, BKLF, kruppel-like 12.0 1.4E+02 0.0047 16.3 2.1 20 9-28 1-20 (37)
5 1q90_G Cytochrome B6F complex 11.3 1.8E+02 0.006 19.2 2.6 25 174-198 5-29 (37)
6 2l8s_A Integrin alpha-1; trans 10.5 3.2E+02 0.011 19.2 3.9 19 215-233 14-32 (54)
7 2zy9_A Mg2+ transporter MGTE; 10.4 5.1E+02 0.018 23.9 6.5 32 172-203 407-438 (473)
8 3s8f_A Cytochrome C oxidase su 10.1 4.1E+02 0.014 26.0 5.9 21 172-193 433-453 (569)
9 2epx_A Zinc finger protein 28 9.9 1.8E+02 0.0062 16.7 2.2 20 8-27 1-20 (47)
10 1vf5_G Protein PET G; photosyn 9.3 1.4E+02 0.0047 19.7 1.5 25 174-198 5-29 (37)
No 1
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=32.29 E-value=46 Score=21.08 Aligned_cols=17 Identities=18% Similarity=0.295 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 025693 216 DIAAVCLLVYFGVSTLL 232 (249)
Q Consensus 216 ~~iaaiLFl~FGl~tL~ 232 (249)
-.++-+-|+.||+|+..
T Consensus 11 glvalltflafgfwlfk 27 (32)
T 2lx0_A 11 GLVALLTFLAFGFWLFK 27 (32)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44566779999999864
No 2
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=29.34 E-value=1.3e+02 Score=23.80 Aligned_cols=16 Identities=19% Similarity=0.094 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHh
Q 025693 218 AAVCLLVYFGVSTLLD 233 (249)
Q Consensus 218 iaaiLFl~FGl~tL~e 233 (249)
+.|+++++.|+..+..
T Consensus 88 ~~Gi~LIi~GV~ll~~ 103 (137)
T 2i68_A 88 IIGMMLICAGVLIINL 103 (137)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc
Confidence 5567779999988754
No 3
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=22.38 E-value=97 Score=21.74 Aligned_cols=19 Identities=16% Similarity=0.069 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 025693 215 DDIAAVCLLVYFGVSTLLD 233 (249)
Q Consensus 215 l~~iaaiLFl~FGl~tL~e 233 (249)
+..++|++.+..-+..||.
T Consensus 17 ~svl~GLllL~li~~~LwK 35 (54)
T 2knc_A 17 VGVLGGLLLLTILVLAMWK 35 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445666666666666665
No 4
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=12.04 E-value=1.4e+02 Score=16.28 Aligned_cols=20 Identities=10% Similarity=0.150 Sum_probs=14.1
Q ss_pred cccccccCCCCCCCCCCCCC
Q 025693 9 SGLKAHSLPSSASYPKASKS 28 (249)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~ 28 (249)
++.+.|.-..|+.|+.-.|.
T Consensus 1 ~H~~~h~~~k~~~C~~C~k~ 20 (37)
T 1p7a_A 1 GSTRGSTGIKPFQCPDCDRS 20 (37)
T ss_dssp CCSSTTCCSSSBCCTTTCCC
T ss_pred CCCCcCCCCCCccCCCCCcc
Confidence 35677887788888765553
No 5
>1q90_G Cytochrome B6F complex subunit PETG; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.26.1
Probab=11.33 E-value=1.8e+02 Score=19.23 Aligned_cols=25 Identities=16% Similarity=0.397 Sum_probs=19.6
Q ss_pred eehHHHHHHHHHHHHHHHHhchhhh
Q 025693 174 VFAGTFGALAAMTVISVILGRTFHY 198 (249)
Q Consensus 174 VflGa~lAL~l~T~LsVl~G~~l~~ 198 (249)
...|.+++++.+|..+..+-.+++|
T Consensus 5 lL~GIVlGlipvtlaGLfv~Ay~Qy 29 (37)
T 1q90_G 5 LLCGIVLGLVPVTIAGLFVTAYLQY 29 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHhhHHHHHHHHHHHHHHHH
Confidence 3568888999888888888776654
No 6
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=10.47 E-value=3.2e+02 Score=19.17 Aligned_cols=19 Identities=21% Similarity=0.065 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 025693 215 DDIAAVCLLVYFGVSTLLD 233 (249)
Q Consensus 215 l~~iaaiLFl~FGl~tL~e 233 (249)
+..++|++.+..-+..||.
T Consensus 14 ~svl~GLLLL~Lii~~LwK 32 (54)
T 2l8s_A 14 LSAFAGLLLLMLLILALWK 32 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4456666666666666665
No 7
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A
Probab=10.43 E-value=5.1e+02 Score=23.90 Aligned_cols=32 Identities=9% Similarity=0.144 Sum_probs=21.1
Q ss_pred ceeehHHHHHHHHHHHHHHHHhchhhhccccC
Q 025693 172 ATVFAGTFGALAAMTVISVILGRTFHYVDEIL 203 (249)
Q Consensus 172 ~~VflGa~lAL~l~T~LsVl~G~~l~~i~~~L 203 (249)
+.+.+-..+|+++...++.++|..+.++..++
T Consensus 407 ~~~~~~v~~a~~~~~~~a~~~g~~~p~~~~~~ 438 (473)
T 2zy9_A 407 PLLLPVVGVSLVLIVFFANLVGAMLPFLLRRL 438 (473)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34444556667777778888888776555444
No 8
>3s8f_A Cytochrome C oxidase subunit 1; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 3s8g_A* 1xme_A* 3qjq_A* 3qjr_A* 3qju_A* 3qjv_A* 3s33_A* 3s38_A* 3s39_A* 3s3a_A* 3s3b_A* 3s3c_A* 3s3d_A* 4esl_A* 4f05_A* 4fa7_A* 3qjs_A* 2qpd_A* 3bvd_A* 2qpe_A* ...
Probab=10.11 E-value=4.1e+02 Score=26.00 Aligned_cols=21 Identities=10% Similarity=0.075 Sum_probs=16.5
Q ss_pred ceeehHHHHHHHHHHHHHHHHh
Q 025693 172 ATVFAGTFGALAAMTVISVILG 193 (249)
Q Consensus 172 ~~VflGa~lAL~l~T~LsVl~G 193 (249)
|..++|..+-.+.++.++.. |
T Consensus 433 wl~fiG~~l~f~pmh~lGl~-G 453 (569)
T 3s8f_A 433 WLWFLGMMIMAVGLHWAGLL-N 453 (569)
T ss_dssp HHHHHHHHHHHHHHHHHHHT-T
T ss_pred HHHHHHHHHHHHHHHHhccc-c
Confidence 56778888888888888876 6
No 9
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=9.93 E-value=1.8e+02 Score=16.70 Aligned_cols=20 Identities=10% Similarity=-0.144 Sum_probs=15.1
Q ss_pred ccccccccCCCCCCCCCCCC
Q 025693 8 WSGLKAHSLPSSASYPKASK 27 (249)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~ 27 (249)
+++.+.|.-..|+.|+.=.|
T Consensus 1 ~~H~~~H~~~k~~~C~~C~k 20 (47)
T 2epx_A 1 GSSGSSGTGKKPYECIECGK 20 (47)
T ss_dssp CCCCCCCCCCCSBCCSSSCC
T ss_pred CccccccCCCCCEECCccCc
Confidence 46788898888888876444
No 10
>1vf5_G Protein PET G; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.26.1 PDB: 2d2c_G* 2e74_G* 2e75_G* 2e76_G* 2zt9_G*
Probab=9.33 E-value=1.4e+02 Score=19.72 Aligned_cols=25 Identities=16% Similarity=0.182 Sum_probs=17.0
Q ss_pred eehHHHHHHHHHHHHHHHHhchhhh
Q 025693 174 VFAGTFGALAAMTVISVILGRTFHY 198 (249)
Q Consensus 174 VflGa~lAL~l~T~LsVl~G~~l~~ 198 (249)
...|.+++++.+|..+..+-.+++|
T Consensus 5 lL~GIVlGlipvtl~GLfv~Ay~Qy 29 (37)
T 1vf5_G 5 LLDGLVLGLVFATLGGLFYAAYQQY 29 (37)
T ss_dssp ----CHHHHHHHHHHHHTHHHHHHT
T ss_pred hhhhHHHhhHHHHHHHHHHHHHHHH
Confidence 4568888899888888888777654
Done!