Query 025693
Match_columns 249
No_of_seqs 151 out of 1128
Neff 3.6
Searched_HMMs 13730
Date Mon Mar 25 15:33:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025693.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/025693hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1q90g_ f.23.26.1 (G:) PetG su 18.1 45 0.0032 19.6 2.6 25 174-198 5-29 (30)
2 d1kqfb2 f.23.22.1 (B:246-290) 13.8 74 0.0054 20.1 3.0 14 215-228 12-25 (45)
3 d2yvxa3 f.57.1.1 (A:276-448) M 9.8 2.7E+02 0.02 21.0 5.9 54 174-229 111-168 (173)
4 d1zuea1 g.9.1.1 (A:1-42) Defen 9.2 37 0.0027 21.2 0.3 11 70-80 31-41 (42)
5 d1q90m_ f.23.25.1 (M:) PetM su 7.4 1.5E+02 0.011 17.5 2.5 22 175-196 5-26 (34)
6 d2axtj1 f.23.32.1 (J:7-40) Pho 5.5 2.2E+02 0.016 16.9 2.5 18 175-192 6-23 (34)
7 d1dnva_ b.121.5.3 (A:) Densovi 5.2 53 0.0039 29.3 -0.7 35 31-68 69-103 (415)
8 d2mrba_ g.46.1.1 (A:) Metallot 4.6 1.5E+02 0.011 17.2 1.3 24 62-85 5-28 (31)
9 d1z1ba1 d.10.1.4 (A:11-59) lam 4.0 1.1E+02 0.008 19.6 0.4 19 34-56 2-20 (49)
10 d1m0ka_ f.13.1.1 (A:) Bacterio 3.7 8.2E+02 0.06 18.5 6.2 22 215-236 132-153 (227)
No 1
>d1q90g_ f.23.26.1 (G:) PetG subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=18.14 E-value=45 Score=19.57 Aligned_cols=25 Identities=16% Similarity=0.397 Sum_probs=18.7
Q ss_pred eehHHHHHHHHHHHHHHHHhchhhh
Q 025693 174 VFAGTFGALAAMTVISVILGRTFHY 198 (249)
Q Consensus 174 VflGa~lAL~l~T~LsVl~G~~l~~ 198 (249)
...|..++++-+|..+.++-.+++|
T Consensus 5 ll~GivlGlipiTl~Glfv~AylQY 29 (30)
T d1q90g_ 5 LLCGIVLGLVPVTIAGLFVTAYLQY 29 (30)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHhhHHHHHHHHHHHHHHHh
Confidence 3568888888888888877766544
No 2
>d1kqfb2 f.23.22.1 (B:246-290) Iron-sulfur subunit of formate dehydrogenase N, transmembrane anchor {Escherichia coli [TaxId: 562]}
Probab=13.79 E-value=74 Score=20.12 Aligned_cols=14 Identities=7% Similarity=-0.308 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHH
Q 025693 215 DDIAAVCLLVYFGV 228 (249)
Q Consensus 215 l~~iaaiLFl~FGl 228 (249)
++.++.+.|.+-.+
T Consensus 12 ~Kpl~~~~~~~~~~ 25 (45)
T d1kqfb2 12 LKPLAAAGFIATFA 25 (45)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34455444443333
No 3
>d2yvxa3 f.57.1.1 (A:276-448) Mg2+ transporter MgtE {Thermus thermophilus [TaxId: 274]}
Probab=9.75 E-value=2.7e+02 Score=21.04 Aligned_cols=54 Identities=13% Similarity=0.269 Sum_probs=33.3
Q ss_pred eehHHHHHHHHHHHHHHHHhchhhhccccCCccccCCCch----hHHHHHHHHHHHHHHH
Q 025693 174 VFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLP----IDDIAAVCLLVYFGVS 229 (249)
Q Consensus 174 VflGa~lAL~l~T~LsVl~G~~l~~i~~~LP~r~~~~~l~----il~~iaaiLFl~FGl~ 229 (249)
+......++++...++.++|..+..+.+++-..-...+-| +.++.+.. ++||+-
T Consensus 111 l~~vi~~sl~~~~~ia~~~G~~lPlll~klg~DPA~aS~P~itti~Di~g~~--iyf~iA 168 (173)
T d2yvxa3 111 LLPVVGVSLVLIVFFANLVGAMLPFLLRRLGVDPALVSNPLVATLSDVTGLL--IYLSVA 168 (173)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCGGGSCSTTHHHHHHHHHHH--HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHHHH--HHHHHH
Confidence 4455668888999999999998877666663322222333 24555544 444443
No 4
>d1zuea1 g.9.1.1 (A:1-42) Defensin-like peptide, DLP {Duckbilled platypus (Ornithorhynchus anatinus), DLP-2 [TaxId: 9258]}
Probab=9.17 E-value=37 Score=21.22 Aligned_cols=11 Identities=55% Similarity=1.035 Sum_probs=8.4
Q ss_pred cccccCCcccc
Q 025693 70 SCENRNDVDCK 80 (249)
Q Consensus 70 ~~~~~~~~~~~ 80 (249)
-|||+|.+-|+
T Consensus 31 ycen~nq~cc~ 41 (42)
T d1zuea1 31 YCENRNQKCCE 41 (42)
T ss_dssp BCSSTTEEEEC
T ss_pred eecCCCccccc
Confidence 47999987764
No 5
>d1q90m_ f.23.25.1 (M:) PetM subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=7.38 E-value=1.5e+02 Score=17.49 Aligned_cols=22 Identities=27% Similarity=0.472 Sum_probs=17.0
Q ss_pred ehHHHHHHHHHHHHHHHHhchh
Q 025693 175 FAGTFGALAAMTVISVILGRTF 196 (249)
Q Consensus 175 flGa~lAL~l~T~LsVl~G~~l 196 (249)
.+|+..-++-||.++..+|-.+
T Consensus 5 iagta~tmig~tl~glaigfvl 26 (34)
T d1q90m_ 5 IAGTALTMVGMTLVGLAIGFVL 26 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecchhHHHHHHHHHHHHHHHhh
Confidence 4677888888888888888654
No 6
>d2axtj1 f.23.32.1 (J:7-40) Photosystem II reaction center protein J, PsbJ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=5.50 E-value=2.2e+02 Score=16.90 Aligned_cols=18 Identities=6% Similarity=0.418 Sum_probs=12.5
Q ss_pred ehHHHHHHHHHHHHHHHH
Q 025693 175 FAGTFGALAAMTVISVIL 192 (249)
Q Consensus 175 flGa~lAL~l~T~LsVl~ 192 (249)
++|++.++.+.+++++++
T Consensus 6 lv~tv~G~~vi~~vG~Ff 23 (34)
T d2axtj1 6 IVATVAGMGVIVIVGLFF 23 (34)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred EeeehhhhhhHhheeeee
Confidence 357777777777777664
No 7
>d1dnva_ b.121.5.3 (A:) Densovirus capsid protein {Galleria mellonella densovirus [TaxId: 37138]}
Probab=5.18 E-value=53 Score=29.31 Aligned_cols=35 Identities=17% Similarity=0.146 Sum_probs=28.3
Q ss_pred cccccCCccccccCCCcccccccCCcchhhhhhhcCCC
Q 025693 31 SKLFPFNSLCKNQTSTSKKLSLRNPYLNFSRELCRDPG 68 (249)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (249)
+.++|.-++|++- +.|.-.||||+.|.--+....-
T Consensus 69 F~lLP~Gs~v~e~---~vkvv~rn~RiAFeTnSS~T~l 103 (415)
T d1dnva_ 69 FDLLPPGSRVVEC---NVKVIFRTNRIAFETSSTVTKQ 103 (415)
T ss_dssp HHTCCTTCBCCCE---EEEEEEEEEEECCCCSCTTSCC
T ss_pred HhhcCCCceEEEE---EEEEEEecCeeEEEecCccccc
Confidence 4489999999988 8999999999999766554333
No 8
>d2mrba_ g.46.1.1 (A:) Metallothionein {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=4.64 E-value=1.5e+02 Score=17.16 Aligned_cols=24 Identities=42% Similarity=0.809 Sum_probs=16.1
Q ss_pred hhhcCCCCcccccCCccccccccc
Q 025693 62 ELCRDPGASCENRNDVDCKNCKMT 85 (249)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~ 85 (249)
+++.--|+||.-.++-.|+.+|-+
T Consensus 5 cscaaagdsc~ca~sctck~ckct 28 (31)
T d2mrba_ 5 CSCAAAGDSCTCANSCTCKACKCT 28 (31)
T ss_dssp CCCCCSSSCCCCSSCCCCSSCCCT
T ss_pred ccccccCCcccccCceeecceeee
Confidence 455566788877777677766654
No 9
>d1z1ba1 d.10.1.4 (A:11-59) lambda integrase N-terminal domain {Bacteriophage lambda [TaxId: 10710]}
Probab=4.02 E-value=1.1e+02 Score=19.57 Aligned_cols=19 Identities=26% Similarity=0.408 Sum_probs=13.4
Q ss_pred ccCCccccccCCCcccccccCCc
Q 025693 34 FPFNSLCKNQTSTSKKLSLRNPY 56 (249)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~ 56 (249)
+|+|-.||.. .-+.+|||.
T Consensus 2 LPpNLY~k~~----~y~~yr~P~ 20 (49)
T d1z1ba1 2 LPPNLYIRNN----GYYCYRDPR 20 (49)
T ss_dssp CCTTEEEETT----TEEEEECTT
T ss_pred CCccceeccC----CeEEeecCC
Confidence 5788888754 357788886
No 10
>d1m0ka_ f.13.1.1 (A:) Bacteriorhodopsin {Archaeon Halobacterium salinarum [TaxId: 2242]}
Probab=3.65 E-value=8.2e+02 Score=18.47 Aligned_cols=22 Identities=9% Similarity=-0.132 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhc
Q 025693 215 DDIAAVCLLVYFGVSTLLDAAS 236 (249)
Q Consensus 215 l~~iaaiLFl~FGl~tL~ea~~ 236 (249)
.-++-+.++.+.-++.++.+..
T Consensus 132 ~~~~is~~~f~~i~~~l~~~~~ 153 (227)
T d1m0ka_ 132 VWWAISTAAMLYILYVLFFGFT 153 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555566665543
Done!