Query 025695
Match_columns 249
No_of_seqs 112 out of 1168
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 08:32:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025695.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025695hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1542 Cysteine proteinase Ca 100.0 2E-60 4.3E-65 399.2 16.4 204 1-228 161-370 (372)
2 cd02698 Peptidase_C1A_Cathepsi 100.0 9.2E-57 2E-61 376.7 24.8 217 1-229 5-238 (239)
3 cd02620 Peptidase_C1A_Cathepsi 100.0 1.2E-56 2.6E-61 375.3 23.5 223 1-226 4-235 (236)
4 cd02248 Peptidase_C1A Peptidas 100.0 1.4E-56 3E-61 368.9 22.7 203 1-226 4-209 (210)
5 cd02621 Peptidase_C1A_Cathepsi 100.0 1.3E-56 2.8E-61 376.9 22.7 214 1-229 5-242 (243)
6 PTZ00203 cathepsin L protease; 100.0 1.4E-55 3.1E-60 384.9 22.9 205 1-227 130-338 (348)
7 KOG1543 Cysteine proteinase Ca 100.0 7.2E-55 1.6E-59 377.9 21.7 207 1-229 113-323 (325)
8 PTZ00200 cysteine proteinase; 100.0 1.4E-54 3.1E-59 388.0 21.7 203 1-229 238-445 (448)
9 PTZ00021 falcipain-2; Provisio 100.0 5E-54 1.1E-58 385.8 21.6 204 1-229 270-488 (489)
10 PF00112 Peptidase_C1: Papain 100.0 4.4E-54 9.5E-59 355.4 17.6 207 1-228 5-219 (219)
11 PTZ00364 dipeptidyl-peptidase 100.0 4.7E-52 1E-56 377.1 23.2 218 1-234 209-464 (548)
12 PTZ00049 cathepsin C-like prot 100.0 1.1E-51 2.4E-56 378.5 23.2 235 1-237 385-684 (693)
13 cd02619 Peptidase_C1 C1 Peptid 100.0 6.6E-48 1.4E-52 319.2 20.7 195 1-214 2-212 (223)
14 smart00645 Pept_C1 Papain fami 100.0 7.3E-48 1.6E-52 307.9 18.1 164 1-225 5-171 (174)
15 PTZ00462 Serine-repeat antigen 100.0 1.1E-45 2.4E-50 347.8 22.7 226 9-243 544-795 (1004)
16 KOG1544 Predicted cysteine pro 100.0 7.1E-42 1.5E-46 284.3 6.9 226 7-234 221-465 (470)
17 COG4870 Cysteine protease [Pos 100.0 5.2E-32 1.1E-36 230.2 7.7 213 1-244 103-335 (372)
18 cd00585 Peptidase_C1B Peptidas 99.9 7.4E-27 1.6E-31 208.3 12.6 203 10-214 55-399 (437)
19 PF03051 Peptidase_C1_2: Pepti 99.8 1E-19 2.2E-24 162.7 13.3 204 10-214 56-400 (438)
20 COG3579 PepC Aminopeptidase C 99.3 3.3E-11 7.1E-16 102.2 9.5 74 138-212 305-400 (444)
21 KOG4128 Bleomycin hydrolases a 98.1 2.2E-06 4.8E-11 73.1 2.6 78 10-87 63-169 (457)
22 PF13529 Peptidase_C39_2: Pept 97.7 0.00029 6.3E-09 53.3 8.6 59 131-199 86-144 (144)
23 PF05543 Peptidase_C47: Stapho 97.6 0.00046 1E-08 54.1 8.4 133 12-216 16-156 (175)
24 COG4990 Uncharacterized protei 95.6 0.028 6.1E-07 44.3 5.2 49 132-201 121-169 (195)
25 PF09778 Guanylate_cyc_2: Guan 94.7 0.13 2.8E-06 42.1 6.8 64 130-197 109-180 (212)
26 PF14399 Transpep_BrtH: NlpC/p 92.9 0.32 6.9E-06 42.2 6.4 66 134-213 78-143 (317)
27 PF12385 Peptidase_C70: Papain 92.0 3.4 7.3E-05 32.2 10.1 37 134-185 98-134 (166)
28 cd00044 CysPc Calpains, domain 88.8 1.1 2.4E-05 39.0 6.0 27 174-201 235-263 (315)
29 cd02549 Peptidase_C39A A sub-f 88.3 1.7 3.6E-05 32.6 6.0 45 137-199 70-114 (141)
30 PF01640 Peptidase_C10: Peptid 73.3 18 0.00039 29.1 7.1 53 134-210 140-192 (192)
31 smart00230 CysPc Calpain-like 61.7 22 0.00048 31.1 5.8 27 174-201 227-255 (318)
32 KOG4621 Uncharacterized conser 40.8 83 0.0018 23.7 5.0 63 132-197 57-131 (167)
33 PF15528 Toxin_48: Putative to 35.3 34 0.00073 27.5 2.4 60 180-246 30-93 (189)
34 PF00648 Peptidase_C2: Calpain 33.9 27 0.00058 30.0 1.8 29 174-203 213-246 (298)
35 PF07910 Peptidase_C78: Peptid 29.6 58 0.0013 26.9 3.0 23 174-196 155-177 (218)
36 PF09028 Mac-1: Mac 1; InterP 29.0 1.1E+02 0.0025 26.8 4.7 38 134-187 233-270 (333)
37 PF15588 Imm7: Immunity protei 28.4 1.3E+02 0.0029 22.0 4.5 32 178-209 18-55 (115)
38 TIGR02608 delta_60_rpt delta-6 22.6 2.1E+02 0.0045 18.0 5.1 36 178-213 14-54 (55)
39 PLN00115 pollen allergen group 20.8 67 0.0014 23.8 1.6 24 176-204 48-73 (118)
40 PF00101 RuBisCO_small: Ribulo 20.1 3.3E+02 0.0071 19.4 5.0 61 135-196 18-96 (99)
No 1
>KOG1542 consensus Cysteine proteinase Cathepsin F [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-60 Score=399.19 Aligned_cols=204 Identities=33% Similarity=0.662 Sum_probs=183.2
Q ss_pred CCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHhCCCCCCCHHHHhhcCCCCCCCCCCCCChHHHHHH-HHHcCcc
Q 025695 1 MPFTNSEHVEILVIQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVNDLLACCGFLCGDGCDGGYPISAWRY-FVHHGVV 79 (249)
Q Consensus 1 ~d~~~~~~~tpV~dQg~~gsCwafA~~~~lE~~~~~~~~~~~~lS~q~l~~~~~~~~~~~c~gg~~~~al~~-~~~~Gi~ 79 (249)
+|||+.|.+|||||||+||+|||||+++++|++..+.++..+.||||+|+||.. .+++|+||.+..|+++ ++..|+.
T Consensus 161 fDWR~kgaVTpVKnQG~CGSCWAFS~tG~vEga~~i~~g~LvsLSEQeLvDCD~--~d~gC~GGl~~nA~~~~~~~gGL~ 238 (372)
T KOG1542|consen 161 FDWRDKGAVTPVKNQGMCGSCWAFSTTGAVEGAWAIATGKLVSLSEQELVDCDS--CDNGCNGGLMDNAFKYIKKAGGLE 238 (372)
T ss_pred cchhccCCccccccCCcCcchhhhhhhhhhhhHHHhhcCcccccchhhhhcccC--cCCcCCCCChhHHHHHHHHhCCcc
Confidence 799999999999999999999999999999999999999999999999999995 4789999999999999 5567899
Q ss_pred CCCcccCCCCCCCCCCCCCCCCCCcccccccccccccccccceEEeeeEE-eCCCHHHHHHHHHHcCCEEEEEEecccCc
Q 025695 80 TEECDPYFDSTGCSHPGCEPAYPTPKCVRKCVKKNQLWRNSKHYSISAYR-INSDPEDIMAEIYKNGPVEVSFTVYEDFA 158 (249)
Q Consensus 80 ~e~~~py~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~i~~~~-~~~~~~~ik~~L~~~gPV~~~~~~~~~~~ 158 (249)
.|.+|||.+. . ...|..+.. .....|..+. ++.++++|...|.+.|||+|++++ ..++
T Consensus 239 ~E~dYPY~g~-------------~---~~~C~~~~~----~~~v~I~~f~~l~~nE~~ia~wLv~~GPi~vgiNa-~~mQ 297 (372)
T KOG1542|consen 239 KEKDYPYTGK-------------K---GNQCHFDKS----KIVVSIKDFSMLSNNEDQIAAWLVTFGPLSVGINA-KPMQ 297 (372)
T ss_pred ccccCCcccc-------------C---CCccccchh----hceEEEeccEecCCCHHHHHHHHHhcCCeEEEEch-HHHH
Confidence 9999999876 1 126776553 5667888888 888999999999999999999997 5789
Q ss_pred cccCceEec---CCCCccCCeEEEEEEeccCCC-CccEEEEEccCCCCCCCCCeEEEEecCCccccCcceeEee
Q 025695 159 HYKSGVYKH---ITGDVMGGHAVKLIGWGTSDD-GEDYWILANQWNRSWGADGYFKIKRGSNECGIEEDVVAGL 228 (249)
Q Consensus 159 ~~~~gi~~~---~~~~~~~~Hav~IVGy~~~~~-~~~~wivkNSWG~~WG~~Gy~~is~~~~~c~~~~~~~~~~ 228 (249)
.|++||..+ .|....++|+||||||| ... .++|||||||||+.||++||+++.||.|.|||++.++.++
T Consensus 298 ~YrgGV~~P~~~~Cs~~~~~HaVLlvGyG-~~g~~~PYWIVKNSWG~~WGE~GY~~l~RG~N~CGi~~mvss~~ 370 (372)
T KOG1542|consen 298 FYRGGVSCPSKYICSPKLLNHAVLLVGYG-SSGYEKPYWIVKNSWGTSWGEKGYYKLCRGSNACGIADMVSSAA 370 (372)
T ss_pred HhcccccCCCcccCCccccCceEEEEeec-CCCCCCceEEEECCccccccccceEEEeccccccccccchhhhh
Confidence 999999987 35556689999999999 666 8999999999999999999999999999999999987643
No 2
>cd02698 Peptidase_C1A_CathepsinX Cathepsin X; the only papain-like lysosomal cysteine peptidase exhibiting carboxymonopeptidase activity. It can also act as a carboxydipeptidase, like cathepsin B, but has been shown to preferentially cleave substrates through a monopeptidyl carboxypeptidase pathway. The propeptide region of cathepsin X, the shortest among papain-like peptidases, is covalently attached to the active site cysteine in the inactive form of the enzyme. Little is known about the biological function of cathepsin X. Some studies point to a role in early tumorigenesis. A more recent study indicates that cathepsin X expression is restricted to immune cells suggesting a role in phagocytosis and the regulation of the immune response.
Probab=100.00 E-value=9.2e-57 Score=376.67 Aligned_cols=217 Identities=35% Similarity=0.716 Sum_probs=181.2
Q ss_pred CCCCCCC---CCCCCCCCC---CCCcHHHHHHHHHHHHHHHHHhC---CCCCCCHHHHhhcCCCCCCCCCCCCChHHHHH
Q 025695 1 MPFTNSE---HVEILVIQG---HCGSCWAFGAVEALSDRFCIHFG---MNLSLSVNDLLACCGFLCGDGCDGGYPISAWR 71 (249)
Q Consensus 1 ~d~~~~~---~~tpV~dQg---~~gsCwafA~~~~lE~~~~~~~~---~~~~lS~q~l~~~~~~~~~~~c~gg~~~~al~ 71 (249)
+|||+.+ .+||||||| .||+|||||++++||+++.++++ ..+.||+|+|++|.. +.+|+||++..+++
T Consensus 5 ~Dwr~~~~~~~v~~vk~Qg~~~~CGsCwAfa~~~aies~~~i~~~~~~~~~~lS~Q~lldC~~---~~gC~GG~~~~a~~ 81 (239)
T cd02698 5 WDWRNVNGVNYVSPTRNQHIPQYCGSCWAHGSTSALADRINIARKGAWPSVYLSVQVVIDCAG---GGSCHGGDPGGVYE 81 (239)
T ss_pred cccccCCCCcccCccccCCCCCCCCcchHHHhHHHHHHHHHHHHCCCCCCcccCHHHHHhCCC---CCCccCcCHHHHHH
Confidence 6999998 999999998 99999999999999999998865 467999999999997 68999999999999
Q ss_pred HHHHcCccCCCcccCCCCC-CCCCCCCCCCCCCccccc--ccccccccccccceEEeeeEEeCCCHHHHHHHHHHcCCEE
Q 025695 72 YFVHHGVVTEECDPYFDST-GCSHPGCEPAYPTPKCVR--KCVKKNQLWRNSKHYSISAYRINSDPEDIMAEIYKNGPVE 148 (249)
Q Consensus 72 ~~~~~Gi~~e~~~py~~~~-~~~~~~~~~~~~~~~~~~--~c~~~~~~~~~~~~~~i~~~~~~~~~~~ik~~L~~~gPV~ 148 (249)
|++++|+++|++|||.... .|. +......|.. .|.... ....+.+..|....++++||++|.++|||+
T Consensus 82 ~~~~~Gl~~e~~yPY~~~~~~C~-----~~~~~~~c~~~~~c~~~~----~~~~~~i~~~~~~~~~~~i~~~l~~~GPV~ 152 (239)
T cd02698 82 YAHKHGIPDETCNPYQAKDGECN-----PFNRCGTCNPFGECFAIK----NYTLYFVSDYGSVSGRDKMMAEIYARGPIS 152 (239)
T ss_pred HHHHcCcCCCCeeCCcCCCCCCc-----CCCCCCCcccCccccccc----ccceEEeeeceecCCHHHHHHHHHHcCCEE
Confidence 9999999999999996642 232 1111112221 222211 234456677763346789999999999999
Q ss_pred EEEEecccCccccCceEecCCCCccCCeEEEEEEeccCCCCccEEEEEccCCCCCCCCCeEEEEecC-----CccccCcc
Q 025695 149 VSFTVYEDFAHYKSGVYKHITGDVMGGHAVKLIGWGTSDDGEDYWILANQWNRSWGADGYFKIKRGS-----NECGIEED 223 (249)
Q Consensus 149 ~~~~~~~~~~~~~~gi~~~~~~~~~~~Hav~IVGy~~~~~~~~~wivkNSWG~~WG~~Gy~~is~~~-----~~c~~~~~ 223 (249)
++|.+.++|..|++|||...++...++|||+|||||++.++++|||||||||++||++|||||+|+. |.|+||..
T Consensus 153 v~i~~~~~f~~Y~~GIy~~~~~~~~~~HaV~IVGyG~~~~g~~YWiikNSWG~~WGe~Gy~~i~rg~~~~~~~~~~i~~~ 232 (239)
T cd02698 153 CGIMATEALENYTGGVYKEYVQDPLINHIISVAGWGVDENGVEYWIVRNSWGEPWGERGWFRIVTSSYKGARYNLAIEED 232 (239)
T ss_pred EEEEecccccccCCeEEccCCCCCcCCeEEEEEEEEecCCCCEEEEEEcCCCcccCcCceEEEEccCCcccccccccccc
Confidence 9999988999999999988776667899999999995444899999999999999999999999999 99999999
Q ss_pred eeEeee
Q 025695 224 VVAGLP 229 (249)
Q Consensus 224 ~~~~~~ 229 (249)
++++.|
T Consensus 233 ~~~~~~ 238 (239)
T cd02698 233 CAWADP 238 (239)
T ss_pred eEEEee
Confidence 999987
No 3
>cd02620 Peptidase_C1A_CathepsinB Cathepsin B group; composed of cathepsin B and similar proteins, including tubulointerstitial nephritis antigen (TIN-Ag). Cathepsin B is a lysosomal papain-like cysteine peptidase which is expressed in all tissues and functions primarily as an exopeptidase through its carboxydipeptidyl activity. Together with other cathepsins, it is involved in the degradation of proteins, proenzyme activation, Ag processing, metabolism and apoptosis. Cathepsin B has been implicated in a number of human diseases such as cancer, rheumatoid arthritis, osteoporosis and Alzheimer's disease. The unique carboxydipeptidyl activity of cathepsin B is attributed to the presence of an occluding loop in its active site which favors the binding of the C-termini of substrate proteins. Some members of this group do not possess the occluding loop. TIN-Ag is an extracellular matrix basement protein which was originally identified as a target Ag involved in anti-tubular basement membrane
Probab=100.00 E-value=1.2e-56 Score=375.29 Aligned_cols=223 Identities=51% Similarity=1.014 Sum_probs=177.5
Q ss_pred CCCCCC--CCC--CCCCCCCCCCcHHHHHHHHHHHHHHHHHhC--CCCCCCHHHHhhcCCCCCCCCCCCCChHHHHHHHH
Q 025695 1 MPFTNS--EHV--EILVIQGHCGSCWAFGAVEALSDRFCIHFG--MNLSLSVNDLLACCGFLCGDGCDGGYPISAWRYFV 74 (249)
Q Consensus 1 ~d~~~~--~~~--tpV~dQg~~gsCwafA~~~~lE~~~~~~~~--~~~~lS~q~l~~~~~~~~~~~c~gg~~~~al~~~~ 74 (249)
+|||+. +.+ +||+|||.||+|||||++++||+++.++++ ..+.||+|+|++|... .+.+|+||++..+|++++
T Consensus 4 ~DwR~~~~~~~~v~~v~dQg~CGsCwAfa~~~~le~~~~i~~~~~~~~~LS~Q~lidC~~~-~~~gC~GG~~~~a~~~i~ 82 (236)
T cd02620 4 FDAREKWPNCISIGEIRDQGNCGSCWAFSAVEAFSDRLCIQSNGKENVLLSAQDLLSCCSG-CGDGCNGGYPDAAWKYLT 82 (236)
T ss_pred ccchhhCCCCCCccccCCcccchhHHHHHHHHHHhhHHHHhcCCCCccccCHHHHHhhcCC-CCCCCCCCCHHHHHHHHH
Confidence 699997 444 599999999999999999999999999887 7899999999999873 357999999999999999
Q ss_pred HcCccCCCcccCCCCCCCCCC-CCCCCCCCccccccccccccc-ccccceEEeeeEE-eCCCHHHHHHHHHHcCCEEEEE
Q 025695 75 HHGVVTEECDPYFDSTGCSHP-GCEPAYPTPKCVRKCVKKNQL-WRNSKHYSISAYR-INSDPEDIMAEIYKNGPVEVSF 151 (249)
Q Consensus 75 ~~Gi~~e~~~py~~~~~~~~~-~~~~~~~~~~~~~~c~~~~~~-~~~~~~~~i~~~~-~~~~~~~ik~~L~~~gPV~~~~ 151 (249)
+.|+++|++|||.+....... ....-.....|...|...... +... .+++..+. +..++++||.+|+++|||++++
T Consensus 83 ~~G~~~e~~yPY~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~-~~~~~~~~~~~~~~~~ik~~l~~~GPv~v~i 161 (236)
T cd02620 83 TTGVVTGGCQPYTIPPCGHHPEGPPPCCGTPYCTPKCQDGCEKTYEED-KHKGKSAYSVPSDETDIMKEIMTNGPVQAAF 161 (236)
T ss_pred hcCCCcCCEecCcCCCCccCCCCCCCCCCCCCCCCCCCcCCcccccee-eeeecceeeeCCHHHHHHHHHHHCCCeEEEE
Confidence 999999999999765211100 000000112223345433211 2212 23333333 6667899999999999999999
Q ss_pred EecccCccccCceEecCCCCccCCeEEEEEEeccCCCCccEEEEEccCCCCCCCCCeEEEEecCCccccCcceeE
Q 025695 152 TVYEDFAHYKSGVYKHITGDVMGGHAVKLIGWGTSDDGEDYWILANQWNRSWGADGYFKIKRGSNECGIEEDVVA 226 (249)
Q Consensus 152 ~~~~~~~~~~~gi~~~~~~~~~~~Hav~IVGy~~~~~~~~~wivkNSWG~~WG~~Gy~~is~~~~~c~~~~~~~~ 226 (249)
.+.++|+.|++|||+.+++...++|||+||||+ ++++++|||||||||+.||++|||||+|++|.|||+..++.
T Consensus 162 ~~~~~f~~Y~~Giy~~~~~~~~~~HaV~iVGyg-~~~g~~YWivrNSWG~~WGe~Gy~ri~~~~~~cgi~~~~~~ 235 (236)
T cd02620 162 TVYEDFLYYKSGVYQHTSGKQLGGHAVKIIGWG-VENGVPYWLAANSWGTDWGENGYFRILRGSNECGIESEVVA 235 (236)
T ss_pred EechhhhhcCCcEEeecCCCCcCCeEEEEEEEe-ccCCeeEEEEEeCCCCCCCCCcEEEEEccCcccccccceec
Confidence 998899999999998766666679999999999 66889999999999999999999999999999999998775
No 4
>cd02248 Peptidase_C1A Peptidase C1A subfamily (MEROPS database nomenclature); composed of cysteine peptidases (CPs) similar to papain, including the mammalian CPs (cathepsins B, C, F, H, L, K, O, S, V, X and W). Papain is an endopeptidase with specific substrate preferences, primarily for bulky hydrophobic or aromatic residues at the S2 subsite, a hydrophobic pocket in papain that accommodates the P2 sidechain of the substrate (the second residue away from the scissile bond). Most members of the papain subfamily are endopeptidases. Some exceptions to this rule can be explained by specific details of the catalytic domains like the occluding loop in cathepsin B which confers an additional carboxydipeptidyl activity and the mini-chain of cathepsin H resulting in an N-terminal exopeptidase activity. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds. Parasitic CPs act extracellularly to help invade tissues and cells, to h
Probab=100.00 E-value=1.4e-56 Score=368.87 Aligned_cols=203 Identities=35% Similarity=0.705 Sum_probs=178.5
Q ss_pred CCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHhCCCCCCCHHHHhhcCCCCCCCCCCCCChHHHHHHHHHcCccC
Q 025695 1 MPFTNSEHVEILVIQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVNDLLACCGFLCGDGCDGGYPISAWRYFVHHGVVT 80 (249)
Q Consensus 1 ~d~~~~~~~tpV~dQg~~gsCwafA~~~~lE~~~~~~~~~~~~lS~q~l~~~~~~~~~~~c~gg~~~~al~~~~~~Gi~~ 80 (249)
+|||+.+.++||+|||.||+|||||++++||++++++++....||+|+|++|... .+.+|.||++..++++++++|+++
T Consensus 4 ~d~r~~~~~~~v~dQg~cgsCwAfa~~~~le~~~~i~~~~~~~lS~q~l~~c~~~-~~~gC~GG~~~~a~~~~~~~Gi~~ 82 (210)
T cd02248 4 VDWREKGAVTPVKDQGSCGSCWAFSTVGALEGAYAIKTGKLVSLSEQQLVDCSTS-GNNGCNGGNPDNAFEYVKNGGLAS 82 (210)
T ss_pred ccCCcCCCCCCCccCCCCcchHHhHHHHHHHHHHHHHcCCCcccCHHHHhccCCC-CCCCCCCCCHHHhHHHHHHCCcCc
Confidence 6999999999999999999999999999999999999988899999999999973 357999999999999999999999
Q ss_pred CCcccCCCCCCCCCCCCCCCCCCcccccccccccccccccceEEeeeEE-eCC-CHHHHHHHHHHcCCEEEEEEecccCc
Q 025695 81 EECDPYFDSTGCSHPGCEPAYPTPKCVRKCVKKNQLWRNSKHYSISAYR-INS-DPEDIMAEIYKNGPVEVSFTVYEDFA 158 (249)
Q Consensus 81 e~~~py~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~i~~~~-~~~-~~~~ik~~L~~~gPV~~~~~~~~~~~ 158 (249)
|++|||... . ..|..... ...+++..|. +.. ++++||++|+++|||++++.+.++|.
T Consensus 83 e~~yPY~~~-------------~----~~C~~~~~----~~~~~i~~~~~i~~~~~~~ik~~l~~~gPV~~~~~~~~~f~ 141 (210)
T cd02248 83 ESDYPYTGK-------------D----GTCKYNSS----KVGAKITGYSNVPPGDEEALKAALANYGPVSVAIDASSSFQ 141 (210)
T ss_pred cccCCccCC-------------C----CCccCCCC----cccEEEeeEEEcCCCcHHHHHHHHhhcCCEEEEEecCcccc
Confidence 999999663 1 23333221 4557777777 543 58999999999999999999998999
Q ss_pred cccCceEecCCC-CccCCeEEEEEEeccCCCCccEEEEEccCCCCCCCCCeEEEEecCCccccCcceeE
Q 025695 159 HYKSGVYKHITG-DVMGGHAVKLIGWGTSDDGEDYWILANQWNRSWGADGYFKIKRGSNECGIEEDVVA 226 (249)
Q Consensus 159 ~~~~gi~~~~~~-~~~~~Hav~IVGy~~~~~~~~~wivkNSWG~~WG~~Gy~~is~~~~~c~~~~~~~~ 226 (249)
.|++|||..+.+ ...++|||+||||| ++.+++|||||||||+.||++||+||+|+.|.|||+....+
T Consensus 142 ~y~~Giy~~~~~~~~~~~Hav~iVGy~-~~~~~~ywiv~NSWG~~WG~~Gy~~i~~~~~~cgi~~~~~~ 209 (210)
T cd02248 142 FYKGGIYSGPCCSNTNLNHAVLLVGYG-TENGVDYWIVKNSWGTSWGEKGYIRIARGSNLCGIASYASY 209 (210)
T ss_pred cCCCCceeCCCCCCCcCCEEEEEEEEe-ecCCceEEEEEcCCCCccccCcEEEEEcCCCccCceeeeec
Confidence 999999988765 56789999999999 56678999999999999999999999999999999977654
No 5
>cd02621 Peptidase_C1A_CathepsinC Cathepsin C; also known as Dipeptidyl Peptidase I (DPPI), an atypical papain-like cysteine peptidase with chloride dependency and dipeptidyl aminopeptidase activity, resulting from its tetrameric structure which limits substrate access. Each subunit of the tetramer is composed of three peptides: the heavy and light chains, which together adopts the papain fold and forms the catalytic domain; and the residual propeptide region, which forms a beta barrel and points towards the substrate's N-terminus. The subunit composition is the result of the unique characteristic of procathepsin C maturation involving the cleavage of the catalytic domain and the non-autocatalytic excision of an activation peptide within its propeptide region. By removing N-terminal dipeptide extensions, cathepsin C activates granule serine peptidases (granzymes) involved in cell-mediated apoptosis, inflammation and tissue remodelling. Loss-of-function mutations in cathepsin C are assoc
Probab=100.00 E-value=1.3e-56 Score=376.92 Aligned_cols=214 Identities=39% Similarity=0.798 Sum_probs=174.1
Q ss_pred CCCCCCC----CCCCCCCCCCCCcHHHHHHHHHHHHHHHHHhCC------CCCCCHHHHhhcCCCCCCCCCCCCChHHHH
Q 025695 1 MPFTNSE----HVEILVIQGHCGSCWAFGAVEALSDRFCIHFGM------NLSLSVNDLLACCGFLCGDGCDGGYPISAW 70 (249)
Q Consensus 1 ~d~~~~~----~~tpV~dQg~~gsCwafA~~~~lE~~~~~~~~~------~~~lS~q~l~~~~~~~~~~~c~gg~~~~al 70 (249)
||||+.+ .++|||||+.||+|||||++++||++++++.+. .+.||+|+|++|... +.+|+||++..++
T Consensus 5 fDwr~~~~~~~~v~~v~dQg~CGsCwAfa~~~~ies~~~i~~~~~~~~~~~~~lS~q~l~dC~~~--~~GC~GG~~~~a~ 82 (243)
T cd02621 5 FDWGDVNNGFNYVSPVRNQGGCGSCYAFASVYALEARIMIASNKTDPLGQQPILSPQHVLSCSQY--SQGCDGGFPFLVG 82 (243)
T ss_pred ccccccCCCCcccccCCCCCcCccHHHHHHHHHHHHHHHHHhCCCCccccCcccCHHHhhhhcCC--CCCCCCCCHHHHH
Confidence 7999998 999999999999999999999999999988765 789999999999862 5799999999999
Q ss_pred HHHHHcCccCCCcccCCCCCCCCCCCCCCCCCCcccccccccccccccccceEEeeeEEeCCCHHHHHHHHHHcCCEEEE
Q 025695 71 RYFVHHGVVTEECDPYFDSTGCSHPGCEPAYPTPKCVRKCVKKNQLWRNSKHYSISAYRINSDPEDIMAEIYKNGPVEVS 150 (249)
Q Consensus 71 ~~~~~~Gi~~e~~~py~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~i~~~~~~~~~~~ik~~L~~~gPV~~~ 150 (249)
++++++|+++|++|||... ....|.... ..+ ..+.......+..+....++++||++|+++|||+++
T Consensus 83 ~~~~~~Gi~~e~~yPY~~~---~~~~C~~~~------~~~----~~~~~~~~~~i~~~~~~~~~~~ik~~i~~~GPv~v~ 149 (243)
T cd02621 83 KFAEDFGIVTEDYFPYTAD---DDRPCKASP------SEC----RRYYFSDYNYVGGCYGCTNEDEMKWEIYRNGPIVVA 149 (243)
T ss_pred HHHHhcCcCCCceeCCCCC---CCCCCCCCc------ccc----ccccccceeEcccccccCCHHHHHHHHHHcCCEEEE
Confidence 9999999999999999651 011121100 000 011111122233333345789999999999999999
Q ss_pred EEecccCccccCceEecCC-----CC--------ccCCeEEEEEEeccCC-CCccEEEEEccCCCCCCCCCeEEEEecCC
Q 025695 151 FTVYEDFAHYKSGVYKHIT-----GD--------VMGGHAVKLIGWGTSD-DGEDYWILANQWNRSWGADGYFKIKRGSN 216 (249)
Q Consensus 151 ~~~~~~~~~~~~gi~~~~~-----~~--------~~~~Hav~IVGy~~~~-~~~~~wivkNSWG~~WG~~Gy~~is~~~~ 216 (249)
|.+.++|..|++|||.... .. ..++|||+|||||++. ++++|||||||||+.||++||+||.|+.|
T Consensus 150 ~~~~~~F~~Y~~GIy~~~~~~~~C~~~~~~~~~~~~~~HaV~iVGyg~~~~~g~~YWiirNSWG~~WGe~Gy~~i~~~~~ 229 (243)
T cd02621 150 FEVYSDFDFYKEGVYHHTDNDEVSDGDNDNFNPFELTNHAVLLVGWGEDEIKGEKYWIVKNSWGSSWGEKGYFKIRRGTN 229 (243)
T ss_pred EEecccccccCCeEECcCCcccccccccccccCcccCCeEEEEEEeeccCCCCCcEEEEEcCCCCCCCcCCeEEEecCCc
Confidence 9998899999999998752 11 2479999999999443 38899999999999999999999999999
Q ss_pred ccccCcceeEeee
Q 025695 217 ECGIEEDVVAGLP 229 (249)
Q Consensus 217 ~c~~~~~~~~~~~ 229 (249)
.|||++.+++++|
T Consensus 230 ~cgi~~~~~~~~~ 242 (243)
T cd02621 230 ECGIESQAVFAYP 242 (243)
T ss_pred ccCcccceEeecc
Confidence 9999999999887
No 6
>PTZ00203 cathepsin L protease; Provisional
Probab=100.00 E-value=1.4e-55 Score=384.95 Aligned_cols=205 Identities=28% Similarity=0.586 Sum_probs=172.5
Q ss_pred CCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHhCCCCCCCHHHHhhcCCCCCCCCCCCCChHHHHHHHHHc---C
Q 025695 1 MPFTNSEHVEILVIQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVNDLLACCGFLCGDGCDGGYPISAWRYFVHH---G 77 (249)
Q Consensus 1 ~d~~~~~~~tpV~dQg~~gsCwafA~~~~lE~~~~~~~~~~~~lS~q~l~~~~~~~~~~~c~gg~~~~al~~~~~~---G 77 (249)
+|||+.|.+|||||||.||+|||||++++||++++++++..+.||+|+|++|... +.||+||++..|++|+.++ |
T Consensus 130 ~DWR~~g~VtpVkdQg~CGSCWAfa~~~aiEs~~~i~~~~~~~LSeQqLvdC~~~--~~GC~GG~~~~a~~yi~~~~~gg 207 (348)
T PTZ00203 130 VDWREKGAVTPVKNQGACGSCWAFSAVGNIESQWAVAGHKLVRLSEQQLVSCDHV--DNGCGGGLMLQAFEWVLRNMNGT 207 (348)
T ss_pred CcCCcCCCCCCccccCCCccHHHHhhHHHHHHHHHHhcCCCccCCHHHHHhccCC--CCCCCCCCHHHHHHHHHHhcCCC
Confidence 7999999999999999999999999999999999999998999999999999863 6799999999999999764 5
Q ss_pred ccCCCcccCCCCCCCCCCCCCCCCCCcccccccccccccccccceEEeeeEE-eCCCHHHHHHHHHHcCCEEEEEEeccc
Q 025695 78 VVTEECDPYFDSTGCSHPGCEPAYPTPKCVRKCVKKNQLWRNSKHYSISAYR-INSDPEDIMAEIYKNGPVEVSFTVYED 156 (249)
Q Consensus 78 i~~e~~~py~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~i~~~~-~~~~~~~ik~~L~~~gPV~~~~~~~~~ 156 (249)
+++|++|||.+... . . ..|..... ......+..|. +..+++.|+.+|++.|||++++++. +
T Consensus 208 i~~e~~YPY~~~~~-~---------~----~~C~~~~~---~~~~~~i~~~~~i~~~e~~~~~~l~~~GPv~v~i~a~-~ 269 (348)
T PTZ00203 208 VFTEKSYPYVSGNG-D---------V----PECSNSSE---LAPGARIDGYVSMESSERVMAAWLAKNGPISIAVDAS-S 269 (348)
T ss_pred CCccccCCCccCCC-C---------C----CcCCCCcc---cccceEecceeecCcCHHHHHHHHHhCCCEEEEEEhh-h
Confidence 88999999976511 0 0 12332111 01123456666 6668899999999999999999984 8
Q ss_pred CccccCceEecCCCCccCCeEEEEEEeccCCCCccEEEEEccCCCCCCCCCeEEEEecCCccccCcceeEe
Q 025695 157 FAHYKSGVYKHITGDVMGGHAVKLIGWGTSDDGEDYWILANQWNRSWGADGYFKIKRGSNECGIEEDVVAG 227 (249)
Q Consensus 157 ~~~~~~gi~~~~~~~~~~~Hav~IVGy~~~~~~~~~wivkNSWG~~WG~~Gy~~is~~~~~c~~~~~~~~~ 227 (249)
|..|++|||.. +.....+|||+||||| .+++++|||||||||+.||++||+||.|+.|.|||+..++.+
T Consensus 270 f~~Y~~GIy~~-c~~~~~nHaVliVGYG-~~~g~~YWiikNSWG~~WGe~GY~ri~rg~n~Cgi~~~~~~~ 338 (348)
T PTZ00203 270 FMSYHSGVLTS-CIGEQLNHGVLLVGYN-MTGEVPYWVIKNSWGEDWGEKGYVRVTMGVNACLLTGYPVSV 338 (348)
T ss_pred hcCccCceeec-cCCCCCCeEEEEEEEe-cCCCceEEEEEcCCCCCcCcCceEEEEcCCCcccccceEEEE
Confidence 99999999974 4444569999999999 667889999999999999999999999999999999887775
No 7
>KOG1543 consensus Cysteine proteinase Cathepsin L [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.2e-55 Score=377.92 Aligned_cols=207 Identities=43% Similarity=0.862 Sum_probs=182.6
Q ss_pred CCCCCCC-CCCCCCCCCCCCcHHHHHHHHHHHHHHHHHhC-CCCCCCHHHHhhcCCCCCCCCCCCCChHHHHHHHHHcCc
Q 025695 1 MPFTNSE-HVEILVIQGHCGSCWAFGAVEALSDRFCIHFG-MNLSLSVNDLLACCGFLCGDGCDGGYPISAWRYFVHHGV 78 (249)
Q Consensus 1 ~d~~~~~-~~tpV~dQg~~gsCwafA~~~~lE~~~~~~~~-~~~~lS~q~l~~~~~~~~~~~c~gg~~~~al~~~~~~Gi 78 (249)
+|||+.+ +++|||||+.||+|||||++++||+++.++++ ..+.||+|+|++|... .++||+||.+..|++|+.++|+
T Consensus 113 ~DwR~~~~~~~~vkdQg~CgsCWAFaa~~aie~~~~i~~g~~l~sLSeq~lvdC~~~-~~~GC~GG~~~~A~~yi~~~G~ 191 (325)
T KOG1543|consen 113 FDWRDKGAVTPPVKDQGSCGSCWAFAATGALEDRYNIKTGGKLLSLSEQDLVDCCGE-CGDGCNGGEPKNAFKYIKKNGG 191 (325)
T ss_pred ccccccCCcCCCcCCCCcCcchHHHHHHHHHHHHHHHHhCCccCccChhhhhhccCC-CCCCcCCCCHHHHHHHHHHhCC
Confidence 6999995 77779999999999999999999999999999 9999999999999985 6789999999999999999999
Q ss_pred cC-CCcccCCCCCCCCCCCCCCCCCCcccccccccccccccccceEEeeeEEeCCCHHHHHHHHHHcCCEEEEEEecccC
Q 025695 79 VT-EECDPYFDSTGCSHPGCEPAYPTPKCVRKCVKKNQLWRNSKHYSISAYRINSDPEDIMAEIYKNGPVEVSFTVYEDF 157 (249)
Q Consensus 79 ~~-e~~~py~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~i~~~~~~~~~~~ik~~L~~~gPV~~~~~~~~~~ 157 (249)
++ ++.|||.+. . ..|..... .........+.++.++++|+.+++++|||.++|.+.++|
T Consensus 192 ~t~~~~Ypy~~~-------------~----~~C~~~~~---~~~~~~~~~~~~~~~e~~i~~~v~~~GPv~v~~~a~~~F 251 (325)
T KOG1543|consen 192 VTECENYPYIGK-------------D----GTCKSNKK---DKTVTIKGFYNVPANEEAIAEAVAKNGPVSVAIDAYEDF 251 (325)
T ss_pred CCCCcCCCCcCC-------------C----CCccCCCc---cceeEeeeeeecCcCHHHHHHHHHhcCCeEEEEeehhhh
Confidence 88 999999765 1 24555443 233333344448888999999999999999999999999
Q ss_pred ccccCceEecCCCCc-cCCeEEEEEEeccCCCCccEEEEEccCCCCCCCCCeEEEEecCCccccCcceeEeee
Q 025695 158 AHYKSGVYKHITGDV-MGGHAVKLIGWGTSDDGEDYWILANQWNRSWGADGYFKIKRGSNECGIEEDVVAGLP 229 (249)
Q Consensus 158 ~~~~~gi~~~~~~~~-~~~Hav~IVGy~~~~~~~~~wivkNSWG~~WG~~Gy~~is~~~~~c~~~~~~~~~~~ 229 (249)
..|++|||.++++.. .++|||+|||||. .++.+|||||||||+.||++||++|.|+.|.|+|+..++++.+
T Consensus 252 ~~Y~~GVy~~~~~~~~~~~Hav~iVGyG~-~~~~~YWivkNSWG~~WGe~Gy~ri~r~~~~~~I~~~~~~~p~ 323 (325)
T KOG1543|consen 252 SLYKGGVYAEEKGDDKEGDHAVLIVGYGT-GDGVDYWIVKNSWGTDWGEKGYFRIARGVNKCGIASEASYGPI 323 (325)
T ss_pred hhccCceEeCCCCCCCCCCceEEEEEEcC-CCCceeEEEEcCCCCCcccCceEEEecCCCchhhhcccccCCC
Confidence 999999999998776 4899999999995 7778999999999999999999999999999999999888444
No 8
>PTZ00200 cysteine proteinase; Provisional
Probab=100.00 E-value=1.4e-54 Score=388.05 Aligned_cols=203 Identities=31% Similarity=0.637 Sum_probs=171.9
Q ss_pred CCCCCCCCCCCCCCCC-CCCcHHHHHHHHHHHHHHHHHhCCCCCCCHHHHhhcCCCCCCCCCCCCChHHHHHHHHHcCcc
Q 025695 1 MPFTNSEHVEILVIQG-HCGSCWAFGAVEALSDRFCIHFGMNLSLSVNDLLACCGFLCGDGCDGGYPISAWRYFVHHGVV 79 (249)
Q Consensus 1 ~d~~~~~~~tpV~dQg-~~gsCwafA~~~~lE~~~~~~~~~~~~lS~q~l~~~~~~~~~~~c~gg~~~~al~~~~~~Gi~ 79 (249)
+|||+.|.+||||||| .||+|||||+++++|++++++++..+.||+|+|++|... +.||+||++..|++|++++|++
T Consensus 238 ~DWR~~g~vtpVkdQG~~CGSCWAFat~~aiEs~~~i~~~~~~~LSeQqLvDC~~~--~~GC~GG~~~~A~~yi~~~Gi~ 315 (448)
T PTZ00200 238 LDWRRADAVTKVKDQGLNCGSCWAFSSVGSVESLYKIYRDKSVDLSEQELVNCDTK--SQGCSGGYPDTALEYVKNKGLS 315 (448)
T ss_pred ccCCCCCCCCCcccCCCccchHHHHhHHHHHHHHHHHhcCCCeecCHHHHhhccCc--cCCCCCCcHHHHHHHHhhcCcc
Confidence 6999999999999999 999999999999999999999888999999999999862 6799999999999999999999
Q ss_pred CCCcccCCCCCCCCCCCCCCCCCCcccccccccccccccccceEEeeeEEeCCCHHHHHHHHHHcCCEEEEEEecccCcc
Q 025695 80 TEECDPYFDSTGCSHPGCEPAYPTPKCVRKCVKKNQLWRNSKHYSISAYRINSDPEDIMAEIYKNGPVEVSFTVYEDFAH 159 (249)
Q Consensus 80 ~e~~~py~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~i~~~~~~~~~~~ik~~L~~~gPV~~~~~~~~~~~~ 159 (249)
+|++|||.+. . ..|.... .....+..|.+....+.++..| ..|||++++.++++|..
T Consensus 316 ~e~~YPY~~~-------------~----~~C~~~~-----~~~~~i~~y~~~~~~~~l~~~l-~~GPV~v~i~~~~~f~~ 372 (448)
T PTZ00200 316 SSSDVPYLAK-------------D----GKCVVSS-----TKKVYIDSYLVAKGKDVLNKSL-VISPTVVYIAVSRELLK 372 (448)
T ss_pred ccccCCCCCC-------------C----CCCcCCC-----CCeeEecceEecCHHHHHHHHH-hcCCEEEEeeccccccc
Confidence 9999999765 1 2333221 1223466676444545555554 68999999999889999
Q ss_pred ccCceEecCCCCccCCeEEEEEEeccC-CCCccEEEEEccCCCCCCCCCeEEEEec---CCccccCcceeEeee
Q 025695 160 YKSGVYKHITGDVMGGHAVKLIGWGTS-DDGEDYWILANQWNRSWGADGYFKIKRG---SNECGIEEDVVAGLP 229 (249)
Q Consensus 160 ~~~gi~~~~~~~~~~~Hav~IVGy~~~-~~~~~~wivkNSWG~~WG~~Gy~~is~~---~~~c~~~~~~~~~~~ 229 (249)
|++|||..+++.. .+|||+|||||.+ +++.+|||||||||++||++||+||.|+ .|.|||+..+.+|+.
T Consensus 373 Yk~GIy~~~C~~~-~nHaV~lVGyG~d~~~g~~YWIIkNSWG~~WGe~GY~ri~r~~~g~n~CGI~~~~~~P~~ 445 (448)
T PTZ00200 373 YKSGVYNGECGKS-LNHAVLLVGEGYDEKTKKRYWIIKNSWGTDWGENGYMRLERTNEGTDKCGILTVGLTPVF 445 (448)
T ss_pred CCCCccccccCCC-CcEEEEEEEecccCCCCCceEEEEcCCCCCcccCeeEEEEeCCCCCCcCCccccceeeEE
Confidence 9999998766543 7999999999853 4678999999999999999999999995 489999999888765
No 9
>PTZ00021 falcipain-2; Provisional
Probab=100.00 E-value=5e-54 Score=385.83 Aligned_cols=204 Identities=30% Similarity=0.618 Sum_probs=171.0
Q ss_pred CCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHhCCCCCCCHHHHhhcCCCCCCCCCCCCChHHHHHHHHHc-Ccc
Q 025695 1 MPFTNSEHVEILVIQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVNDLLACCGFLCGDGCDGGYPISAWRYFVHH-GVV 79 (249)
Q Consensus 1 ~d~~~~~~~tpV~dQg~~gsCwafA~~~~lE~~~~~~~~~~~~lS~q~l~~~~~~~~~~~c~gg~~~~al~~~~~~-Gi~ 79 (249)
+|||+.|.+|||||||.||+|||||++++||++++++++..+.||+|+|++|... +.||.||++..|++++.+. |++
T Consensus 270 ~DWR~~g~VtpVKdQG~CGSCWAFAa~~alEs~~~I~~g~~v~LSeQqLVDCs~~--n~GC~GG~~~~Af~yi~~~gGl~ 347 (489)
T PTZ00021 270 YDWRLHNGVTPVKDQKNCGSCWAFSTVGVVESQYAIRKNELVSLSEQELVDCSFK--NNGCYGGLIPNAFEDMIELGGLC 347 (489)
T ss_pred cccccCCCCCCcccccccccHHHHHHHHHHHHHHHHHcCCCcccCHHHHhhhccC--CCCCCCcchHhhhhhhhhccccC
Confidence 6999999999999999999999999999999999999999999999999999863 6899999999999998765 899
Q ss_pred CCCcccCCCCCCCCCCCCCCCCCCcccccccccccccccccceEEeeeEE-eCCCHHHHHHHHHHcCCEEEEEEecccCc
Q 025695 80 TEECDPYFDSTGCSHPGCEPAYPTPKCVRKCVKKNQLWRNSKHYSISAYR-INSDPEDIMAEIYKNGPVEVSFTVYEDFA 158 (249)
Q Consensus 80 ~e~~~py~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~i~~~~-~~~~~~~ik~~L~~~gPV~~~~~~~~~~~ 158 (249)
+|++|||.+.. . ..|.... ....+++..|. ++ +++|+.+|+..|||++++.+.++|.
T Consensus 348 tE~~YPY~~~~------------~----~~C~~~~----~~~~~~i~~y~~i~--~~~lk~al~~~GPVsv~i~a~~~f~ 405 (489)
T PTZ00021 348 SEDDYPYVSDT------------P----ELCNIDR----CKEKYKIKSYVSIP--EDKFKEAIRFLGPISVSIAVSDDFA 405 (489)
T ss_pred cccccCccCCC------------C----Ccccccc----ccccceeeeEEEec--HHHHHHHHHhcCCeEEEEEeecccc
Confidence 99999996641 1 1232211 11234566666 43 4789999999999999999988999
Q ss_pred cccCceEecCCCCccCCeEEEEEEeccCC---------CCccEEEEEccCCCCCCCCCeEEEEecC----CccccCccee
Q 025695 159 HYKSGVYKHITGDVMGGHAVKLIGWGTSD---------DGEDYWILANQWNRSWGADGYFKIKRGS----NECGIEEDVV 225 (249)
Q Consensus 159 ~~~~gi~~~~~~~~~~~Hav~IVGy~~~~---------~~~~~wivkNSWG~~WG~~Gy~~is~~~----~~c~~~~~~~ 225 (249)
.|++|||..+++. ..+|||+|||||++. .+.+|||||||||+.||++||+||.|+. |.|||...+.
T Consensus 406 ~YkgGIy~~~C~~-~~nHAVlIVGYG~e~~~~~~~~~~~~~~YWIVKNSWGt~WGE~GY~rI~r~~~g~~n~CGI~t~a~ 484 (489)
T PTZ00021 406 FYKGGIFDGECGE-EPNHAVILVGYGMEEIYNSDTKKMEKRYYYIIKNSWGESWGEKGFIRIETDENGLMKTCSLGTEAY 484 (489)
T ss_pred cCCCCcCCCCCCC-ccceEEEEEEecCcCCcccccccCCCCCEEEEECCCCCCcccCeEEEEEcCCCCCCCCCCCcccce
Confidence 9999999876544 469999999999432 1246999999999999999999999986 5899999988
Q ss_pred Eeee
Q 025695 226 AGLP 229 (249)
Q Consensus 226 ~~~~ 229 (249)
+|+.
T Consensus 485 yP~~ 488 (489)
T PTZ00021 485 VPLI 488 (489)
T ss_pred eEec
Confidence 8763
No 10
>PF00112 Peptidase_C1: Papain family cysteine protease This is family C1 in the peptidase classification. ; InterPro: IPR000668 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of proteins belong to the peptidase family C1, sub-family C1A (papain family, clan CA). It includes proteins classed as non-peptidase homologs. These are have either been shown experimentally to lack peptidase activity or lack one or more of the active site residues. The papain family has a wide variety of activities, including broad-range (papain) and narrow-range endo-peptidases, aminopeptidases, dipeptidyl peptidases and enzymes with both exo- and endo-peptidase activity []. Members of the papain family are widespread, found in baculovirus [], eubacteria, yeast, and practically all protozoa, plants and mammals []. The proteins are typically lysosomal or secreted, and proteolytic cleavage of the propeptide is required for enzyme activation, although bleomycin hydrolase is cytosolic in fungi and mammals []. Papain-like cysteine proteinases are essentially synthesised as inactive proenzymes (zymogens) with N-terminal propeptide regions. The activation process of these enzymes includes the removal of propeptide regions. The propeptide regions serve a variety of functions in vivo and in vitro. The pro-region is required for the proper folding of the newly synthesised enzyme, the inactivation of the peptidase domain and stabilisation of the enzyme against denaturing at neutral to alkaline pH conditions. Amino acid residues within the pro-region mediate their membrane association, and play a role in the transport of the proenzyme to lysosomes. Among the most notable features of propeptides is their ability to inhibit the activity of their cognate enzymes and that certain propeptides exhibit high selectivity for inhibition of the peptidases from which they originate []. The catalytic residues of papain are Cys-25 and His-159, other important residues being Gln-19, which helps form the 'oxyanion hole', and Asn-175, which orientates the imidazole ring of His-159. ; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 3MOR_B 3HHI_B 1S4V_A 3F75_A 1MEG_A 1PCI_C 1PPO_A 3HD3_B 1F29_A 1EWL_A ....
Probab=100.00 E-value=4.4e-54 Score=355.45 Aligned_cols=207 Identities=40% Similarity=0.786 Sum_probs=172.6
Q ss_pred CCCCCC-CCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHh-CCCCCCCHHHHhhcCCCCCCCCCCCCChHHHHHHHHH-cC
Q 025695 1 MPFTNS-EHVEILVIQGHCGSCWAFGAVEALSDRFCIHF-GMNLSLSVNDLLACCGFLCGDGCDGGYPISAWRYFVH-HG 77 (249)
Q Consensus 1 ~d~~~~-~~~tpV~dQg~~gsCwafA~~~~lE~~~~~~~-~~~~~lS~q~l~~~~~~~~~~~c~gg~~~~al~~~~~-~G 77 (249)
||||+. +.++||+||+.||+|||||++++||++++++. ...+.||+|+|++|.. ..+.+|+||++..+++++++ .|
T Consensus 5 ~D~r~~~~~~~~v~dQg~~gsCwafa~~~~~e~~~~~~~~~~~~~lS~q~l~~~~~-~~~~~c~gg~~~~a~~~~~~~~G 83 (219)
T PF00112_consen 5 FDWRDKGGRITPVRDQGSCGSCWAFAAAAALESRLAIQNNGKNVDLSEQYLIDCSN-KYNKGCDGGSPFDALKYIKNNNG 83 (219)
T ss_dssp EEGGGTTTCSG---BTTSSBTHHHHHHHHHHHHHHHHHHTSSCEEB-HHHHHHHST-GTSSTTBBBEHHHHHHHHHHHTS
T ss_pred EecccCCCCcCccccCCcccccccchhccceecccccccccccccccccccccccc-ccccccccCcccccceeecccCc
Confidence 699998 49999999999999999999999999999999 7999999999999997 44679999999999999999 99
Q ss_pred ccCCCcccCCCCCCCCCCCCCCCCCCcccccccccccccccccceEEeeeEE-eCC-CHHHHHHHHHHcCCEEEEEEecc
Q 025695 78 VVTEECDPYFDSTGCSHPGCEPAYPTPKCVRKCVKKNQLWRNSKHYSISAYR-INS-DPEDIMAEIYKNGPVEVSFTVYE 155 (249)
Q Consensus 78 i~~e~~~py~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~i~~~~-~~~-~~~~ik~~L~~~gPV~~~~~~~~ 155 (249)
+++|++|||..... ..|...... ....++..|. +.. ++++||++|+++|||++++.+.+
T Consensus 84 i~~e~~~pY~~~~~----------------~~c~~~~~~---~~~~~i~~~~~~~~~~~~~ik~~L~~~gpV~~~~~~~~ 144 (219)
T PF00112_consen 84 IVTEEDYPYNGNEN----------------PTCKSKKSN---SYYVKIKGYGKVKDNDIEDIKKALMKYGPVVASIDVSS 144 (219)
T ss_dssp BEBTTTS--SSSSS----------------CSSCHSGGG---EEEBEESEEEEEESTCHHHHHHHHHHHSSEEEEEEEES
T ss_pred cccccccccccccc----------------ccccccccc---cccccccccccccccchhHHHHHHhhCceeeeeeeccc
Confidence 99999999976410 234433211 1145677777 444 69999999999999999999988
Q ss_pred -cCccccCceEecCC-CCccCCeEEEEEEeccCCCCccEEEEEccCCCCCCCCCeEEEEecCC-ccccCcceeEee
Q 025695 156 -DFAHYKSGVYKHIT-GDVMGGHAVKLIGWGTSDDGEDYWILANQWNRSWGADGYFKIKRGSN-ECGIEEDVVAGL 228 (249)
Q Consensus 156 -~~~~~~~gi~~~~~-~~~~~~Hav~IVGy~~~~~~~~~wivkNSWG~~WG~~Gy~~is~~~~-~c~~~~~~~~~~ 228 (249)
+|..|++|||..+. ....++|||+||||| ++.+++|||||||||+.||++||+||+|+.+ .|||++.+++|+
T Consensus 145 ~~f~~~~~gi~~~~~~~~~~~~Hav~iVGy~-~~~~~~~wiv~NSWG~~WG~~Gy~~i~~~~~~~c~i~~~~~~~~ 219 (219)
T PF00112_consen 145 EDFQNYKSGIYDPPDCSNESGGHAVLIVGYD-DENGKGYWIVKNSWGTDWGDNGYFRISYDYNNECGIESQAVYPI 219 (219)
T ss_dssp HHHHTEESSEECSTSSSSSSEEEEEEEEEEE-EETTEEEEEEE-SBTTTSTBTTEEEEESSSSSGGGTTSSEEEEE
T ss_pred cccccccceeeeccccccccccccccccccc-cccceeeEeeehhhCCccCCCeEEEEeeCCCCcCccCceeeecC
Confidence 59999999999874 346789999999999 6668999999999999999999999999987 999999999975
No 11
>PTZ00364 dipeptidyl-peptidase I precursor; Provisional
Probab=100.00 E-value=4.7e-52 Score=377.05 Aligned_cols=218 Identities=27% Similarity=0.530 Sum_probs=177.3
Q ss_pred CCCCCCC---CCCCCCCCCC---CCcHHHHHHHHHHHHHHHHHhC------CCCCCCHHHHhhcCCCCCCCCCCCCChHH
Q 025695 1 MPFTNSE---HVEILVIQGH---CGSCWAFGAVEALSDRFCIHFG------MNLSLSVNDLLACCGFLCGDGCDGGYPIS 68 (249)
Q Consensus 1 ~d~~~~~---~~tpV~dQg~---~gsCwafA~~~~lE~~~~~~~~------~~~~lS~q~l~~~~~~~~~~~c~gg~~~~ 68 (249)
+|||+.| .++|||||+. ||+|||||++++||++++++++ ..+.||+|+|++|... +.||+||++..
T Consensus 209 fDWR~~gg~~~VtpVrdQg~~~~CGSCWAFAav~alEsr~~I~tn~~~~~g~~~~LS~QqLVDCs~~--n~GCdGG~p~~ 286 (548)
T PTZ00364 209 WSWGDVGGASFLPAAPPASPGRGCNSSYVEAALAAMMARVMVASNRTDPLGQQTFLSARHVLDCSQY--GQGCAGGFPEE 286 (548)
T ss_pred cccCcCCCCccCCCCcCCCCCCCCcCHHHHHHHHHHHHHHHHHhCCCcccCcccCcCHHHHhcccCC--CCCCCCCcHHH
Confidence 7999997 8999999999 9999999999999999999873 4688999999999863 68999999999
Q ss_pred HHHHHHHcCccCCCcc--cCCCCCCCCCCCCCCCCCCccccccccccc--ccccccceEEeeeEE-eCCCHHHHHHHHHH
Q 025695 69 AWRYFVHHGVVTEECD--PYFDSTGCSHPGCEPAYPTPKCVRKCVKKN--QLWRNSKHYSISAYR-INSDPEDIMAEIYK 143 (249)
Q Consensus 69 al~~~~~~Gi~~e~~~--py~~~~~~~~~~~~~~~~~~~~~~~c~~~~--~~~~~~~~~~i~~~~-~~~~~~~ik~~L~~ 143 (249)
+++|++++|+++|++| ||.+... ... .|.... ..+.......+..|. +..++++|+.+|++
T Consensus 287 A~~yi~~~GI~tE~dY~~PY~~~dg-~~~-------------~Ck~~~~~~~y~~~~~~~I~gyy~~~~~e~~I~~eI~~ 352 (548)
T PTZ00364 287 VGKFAETFGILTTDSYYIPYDSGDG-VER-------------ACKTRRPSRRYYFTNYGPLGGYYGAVTDPDEIIWEIYR 352 (548)
T ss_pred HHHHHHhCCcccccccCCCCCCCCC-CCC-------------CCCCCcccceeeeeeeEEecceeecCCcHHHHHHHHHH
Confidence 9999999999999999 9965421 001 122211 111122233455554 45678899999999
Q ss_pred cCCEEEEEEecccCccccCceEecC---------CC----------CccCCeEEEEEEeccCCCCccEEEEEccCCC--C
Q 025695 144 NGPVEVSFTVYEDFAHYKSGVYKHI---------TG----------DVMGGHAVKLIGWGTSDDGEDYWILANQWNR--S 202 (249)
Q Consensus 144 ~gPV~~~~~~~~~~~~~~~gi~~~~---------~~----------~~~~~Hav~IVGy~~~~~~~~~wivkNSWG~--~ 202 (249)
+|||+++|++.++|+.|++|||... +. ....+|||+|||||.++++++|||||||||+ +
T Consensus 353 ~GPVsVaIda~~df~~YksGiy~gi~~~~~~~~~~~~~~~~~~~~~~~~~nHAVlIVGYG~de~G~~YWIVKNSWGt~~~ 432 (548)
T PTZ00364 353 HGPVPASVYANSDWYNCDENSTEDVRYVSLDDYSTASADRPLRHYFASNVNHTVLIIGWGTDENGGDYWLVLDPWGSRRS 432 (548)
T ss_pred cCCeEEEEEechHHHhcCCCCccCeeccccccccccccCCcccccccccCCeEEEEEEecccCCCceEEEEECCCCCCCC
Confidence 9999999999889999999987521 00 1346899999999965678899999999999 9
Q ss_pred CCCCCeEEEEecCCccccCcceeEeeeCCCcc
Q 025695 203 WGADGYFKIKRGSNECGIEEDVVAGLPSSKNL 234 (249)
Q Consensus 203 WG~~Gy~~is~~~~~c~~~~~~~~~~~~~~~~ 234 (249)
||++||+||.|+.|.|||++.++++.|...+.
T Consensus 433 WGE~GYfRI~RG~N~CGIes~~v~~~~~~~~~ 464 (548)
T PTZ00364 433 WCDGGTRKIARGVNAYNIESEVVVMYWAPYPD 464 (548)
T ss_pred cccCCeEEEEcCCCcccccceeeeeeeecCCC
Confidence 99999999999999999999999888844443
No 12
>PTZ00049 cathepsin C-like protein; Provisional
Probab=100.00 E-value=1.1e-51 Score=378.55 Aligned_cols=235 Identities=28% Similarity=0.521 Sum_probs=178.0
Q ss_pred CCCCCC----CCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHhCC----------CCCCCHHHHhhcCCCCCCCCCCCCCh
Q 025695 1 MPFTNS----EHVEILVIQGHCGSCWAFGAVEALSDRFCIHFGM----------NLSLSVNDLLACCGFLCGDGCDGGYP 66 (249)
Q Consensus 1 ~d~~~~----~~~tpV~dQg~~gsCwafA~~~~lE~~~~~~~~~----------~~~lS~q~l~~~~~~~~~~~c~gg~~ 66 (249)
||||+. +.++||+|||.||+|||||++++||+++.++.+. ...||+|+|++|... +.||+||++
T Consensus 385 fDWRd~~~~~~~vtpVkdQG~CGSCWAFAat~alEsR~~Ia~~~~l~~~~~~~~~~~LS~QqLLDCs~~--nqGC~GG~~ 462 (693)
T PTZ00049 385 FTWGDPFNNNTREYDVTNQLLCGSCYIASQMYAFKRRIEIALTKNLDKKYLNNFDDLLSIQTVLSCSFY--DQGCNGGFP 462 (693)
T ss_pred EecCcCCCCCCcccCCCCCccCcHHHHHHHHHHHHHHHHHHhccccccccccccccCcCHHHhcccCCC--CCCcCCCcH
Confidence 699985 6799999999999999999999999999998632 237999999999863 689999999
Q ss_pred HHHHHHHHHcCccCCCcccCCCC-CCCCCCCCCCCCC---------------Cccccccccccccc--ccccceEEeeeE
Q 025695 67 ISAWRYFVHHGVVTEECDPYFDS-TGCSHPGCEPAYP---------------TPKCVRKCVKKNQL--WRNSKHYSISAY 128 (249)
Q Consensus 67 ~~al~~~~~~Gi~~e~~~py~~~-~~~~~~~~~~~~~---------------~~~~~~~c~~~~~~--~~~~~~~~i~~~ 128 (249)
..+++|+++.||++|++|||.+. ..|....+..... ...|...|...... -.....+....|
T Consensus 463 ~~A~kya~~~GI~tEscYPY~a~~g~C~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~y~k~y 542 (693)
T PTZ00049 463 YLVSKMAKLQGIPLDKVFPYTATEQTCPYQVDQSANSMNGSANLRQINAVFFSSETQSDMHADFEAPISSEPARWYAKDY 542 (693)
T ss_pred HHHHHHHHHCCCCcCCccCCcCCCCCCCCCCCCccccccccccccccccccccccccccccccccccccccccceeeeee
Confidence 99999999999999999999654 3354321110000 00111111110000 001122334444
Q ss_pred E-e--------CCCHHHHHHHHHHcCCEEEEEEecccCccccCceEecC-------CCC--------------ccCCeEE
Q 025695 129 R-I--------NSDPEDIMAEIYKNGPVEVSFTVYEDFAHYKSGVYKHI-------TGD--------------VMGGHAV 178 (249)
Q Consensus 129 ~-~--------~~~~~~ik~~L~~~gPV~~~~~~~~~~~~~~~gi~~~~-------~~~--------------~~~~Hav 178 (249)
. + ..++++|+.+|+..|||+|+|+++++|..|++|||..+ +.. ...+|||
T Consensus 543 ~yI~g~y~~~~~~~E~~Im~eI~~~GPVsVsIda~~dF~~YksGVY~~~~~~h~~~C~~d~~~~~~~~~~~G~e~~NHAV 622 (693)
T PTZ00049 543 NYIGGCYGCNQCNGEKIMMNEIYRNGPIVASFEASPDFYDYADGVYYVEDFPHARRCTVDLPKHNGVYNITGWEKVNHAI 622 (693)
T ss_pred EEecccccccCCCCHHHHHHHHHhcCCEEEEEEechhhhcCCCccccCcccccccccCCccccccccccccccccCceEE
Confidence 4 3 24689999999999999999999889999999999853 211 1358999
Q ss_pred EEEEeccCC-CCc--cEEEEEccCCCCCCCCCeEEEEecCCccccCcceeEeeeCCCccccc
Q 025695 179 KLIGWGTSD-DGE--DYWILANQWNRSWGADGYFKIKRGSNECGIEEDVVAGLPSSKNLVKE 237 (249)
Q Consensus 179 ~IVGy~~~~-~~~--~~wivkNSWG~~WG~~Gy~~is~~~~~c~~~~~~~~~~~~~~~~~~~ 237 (249)
+|||||.++ ++. +|||||||||+.||++||+||.|+.|.|||++.+++..|....-..+
T Consensus 623 lIVGwG~d~enG~~~~YWIVRNSWGt~WGenGYfKI~RG~N~CGIEs~a~~~~pd~~rg~~~ 684 (693)
T PTZ00049 623 VLVGWGEEEINGKLYKYWIGRNSWGKNWGKEGYFKIIRGKNFSGIESQSLFIEPDFSRGAGK 684 (693)
T ss_pred EEEEeccccCCCcccCEEEEECCCCCCcccCceEEEEcCCCccCCccceeEEeeeccccHHH
Confidence 999999543 453 79999999999999999999999999999999999999987654443
No 13
>cd02619 Peptidase_C1 C1 Peptidase family (MEROPS database nomenclature), also referred to as the papain family; composed of two subfamilies of cysteine peptidases (CPs), C1A (papain) and C1B (bleomycin hydrolase). Papain-like enzymes are mostly endopeptidases with some exceptions like cathepsins B, C, H and X, which are exopeptidases. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds while mammalian CPs are primarily lysosomal enzymes responsible for protein degradation in the lysosome. Papain-like CPs are synthesized as inactive proenzymes with N-terminal propeptide regions, which are removed upon activation. Bleomycin hydrolase (BH) is a CP that detoxifies bleomycin by hydrolysis of an amide group. It acts as a carboxypeptidase on its C-terminus to convert itself into an aminopeptidase and peptide ligase. BH is found in all tissues in mammals as well as in many other eukaryotes. It forms a hexameric ring barrel str
Probab=100.00 E-value=6.6e-48 Score=319.20 Aligned_cols=195 Identities=31% Similarity=0.558 Sum_probs=162.2
Q ss_pred CCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHhC--CCCCCCHHHHhhcCCCCC---CCCCCCCChHHHHH-HHH
Q 025695 1 MPFTNSEHVEILVIQGHCGSCWAFGAVEALSDRFCIHFG--MNLSLSVNDLLACCGFLC---GDGCDGGYPISAWR-YFV 74 (249)
Q Consensus 1 ~d~~~~~~~tpV~dQg~~gsCwafA~~~~lE~~~~~~~~--~~~~lS~q~l~~~~~~~~---~~~c~gg~~~~al~-~~~ 74 (249)
+|||+.+ ++||+|||.||+|||||+++++|+.++++.. ..+.||+|+|++|..... ..+|.||++..++. +++
T Consensus 2 ~d~r~~~-~~~v~dQg~~gsCwafa~~~~les~~~~~~~~~~~~~lS~q~l~~c~~~~~~~~~~~c~gG~~~~~~~~~~~ 80 (223)
T cd02619 2 VDLRPLR-LTPVKNQGSRGSCWAFASAYALESAYRIKGGEDEYVDLSPQYLYICANDECLGINGSCDGGGPLSALLKLVA 80 (223)
T ss_pred CcchhcC-CCCcccCCCCcCcHHHHHHHHHHHHHHHhcCCcccccCCHHHHHHhccccccccCCCCCCCcHHHHHHHHHH
Confidence 6999999 9999999999999999999999999999987 889999999999997432 26899999999998 999
Q ss_pred HcCccCCCcccCCCCCCCCCCCCCCCCCCcccccccccccccccccceEEeeeEE-eC-CCHHHHHHHHHHcCCEEEEEE
Q 025695 75 HHGVVTEECDPYFDSTGCSHPGCEPAYPTPKCVRKCVKKNQLWRNSKHYSISAYR-IN-SDPEDIMAEIYKNGPVEVSFT 152 (249)
Q Consensus 75 ~~Gi~~e~~~py~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~i~~~~-~~-~~~~~ik~~L~~~gPV~~~~~ 152 (249)
++|+++|++|||..... .|...+ .........++..|. +. .++++||++|+++|||++++.
T Consensus 81 ~~Gi~~e~~~Py~~~~~-------------~~~~~~----~~~~~~~~~~~~~y~~~~~~~~~~ik~aL~~~gPv~~~~~ 143 (223)
T cd02619 81 LKGIPPEEDYPYGAESD-------------GEEPKS----EAALNAAKVKLKDYRRVLKNNIEDIKEALAKGGPVVAGFD 143 (223)
T ss_pred HcCCCccccCCCCCCCC-------------CCCCCC----ccchhhcceeecceeEeCchhHHHHHHHHHHCCCEEEEEE
Confidence 99999999999976511 111111 011223456677777 43 357999999999999999999
Q ss_pred ecccCccccCceEe------cCCCCccCCeEEEEEEeccCCC--CccEEEEEccCCCCCCCCCeEEEEec
Q 025695 153 VYEDFAHYKSGVYK------HITGDVMGGHAVKLIGWGTSDD--GEDYWILANQWNRSWGADGYFKIKRG 214 (249)
Q Consensus 153 ~~~~~~~~~~gi~~------~~~~~~~~~Hav~IVGy~~~~~--~~~~wivkNSWG~~WG~~Gy~~is~~ 214 (249)
+.+.|..++++++. ..+....++|||+||||| ++. +++|||||||||+.||++||+||+|+
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Hav~ivGy~-~~~~~~~~~~i~~NSwG~~wg~~Gy~~i~~~ 212 (223)
T cd02619 144 VYSGFDRLKEGIIYEEIVYLLYEDGDLGGHAVVIVGYD-DNYVEGKGAFIVKNSWGTDWGDNGYGRISYE 212 (223)
T ss_pred cccchhcccCccccccccccccCCCccCCeEEEEEeec-CCCCCCCCEEEEEeCCCCccccCCEEEEehh
Confidence 99999999998862 234455689999999999 544 78999999999999999999999997
No 14
>smart00645 Pept_C1 Papain family cysteine protease.
Probab=100.00 E-value=7.3e-48 Score=307.91 Aligned_cols=164 Identities=45% Similarity=0.929 Sum_probs=144.8
Q ss_pred CCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHhCCCCCCCHHHHhhcCCCCCCCCCCCCChHHHHHHHHHc-Ccc
Q 025695 1 MPFTNSEHVEILVIQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVNDLLACCGFLCGDGCDGGYPISAWRYFVHH-GVV 79 (249)
Q Consensus 1 ~d~~~~~~~tpV~dQg~~gsCwafA~~~~lE~~~~~~~~~~~~lS~q~l~~~~~~~~~~~c~gg~~~~al~~~~~~-Gi~ 79 (249)
+|||+.+.+|||+||+.||+|||||++++||++++++++..+.||+|+|++|... .+.+|+||++..+++++++. |++
T Consensus 5 ~D~R~~~~~~~v~dQg~CGsCwAfa~~~~ie~~~~i~~~~~~~lS~q~l~~C~~~-~~~gC~GG~~~~a~~~~~~~~Gi~ 83 (174)
T smart00645 5 FDWRKKGAVTPVKDQGQCGSCWAFSATGALEGRYCIKTGKLVSLSEQQLVDCSTG-GNNGCNGGLPDNAFEYIKKNGGLE 83 (174)
T ss_pred CcccccCCCCccccCcccchHHHHHHHHHHHHHHHHhcCCccccCHHHHhhhcCC-CCCCCCCcCHHHHHHHHHHcCCcc
Confidence 6999999999999999999999999999999999999988999999999999974 34589999999999999998 999
Q ss_pred CCCcccCCCCCCCCCCCCCCCCCCcccccccccccccccccceEEeeeEEeCCCHHHHHHHHHHcCCEEEEEEecccCcc
Q 025695 80 TEECDPYFDSTGCSHPGCEPAYPTPKCVRKCVKKNQLWRNSKHYSISAYRINSDPEDIMAEIYKNGPVEVSFTVYEDFAH 159 (249)
Q Consensus 80 ~e~~~py~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~i~~~~~~~~~~~ik~~L~~~gPV~~~~~~~~~~~~ 159 (249)
+|++|||.. ++.+.+. +|..
T Consensus 84 ~e~~~PY~~-----------------------------------------------------------~~~~~~~-~f~~ 103 (174)
T smart00645 84 TESCYPYTG-----------------------------------------------------------SVAIDAS-DFQF 103 (174)
T ss_pred cccccCccc-----------------------------------------------------------EEEEEcc-cccC
Confidence 999999921 4455554 6999
Q ss_pred ccCceEecC-CCCccCCeEEEEEEeccCCCCccEEEEEccCCCCCCCCCeEEEEecC-CccccCccee
Q 025695 160 YKSGVYKHI-TGDVMGGHAVKLIGWGTSDDGEDYWILANQWNRSWGADGYFKIKRGS-NECGIEEDVV 225 (249)
Q Consensus 160 ~~~gi~~~~-~~~~~~~Hav~IVGy~~~~~~~~~wivkNSWG~~WG~~Gy~~is~~~-~~c~~~~~~~ 225 (249)
|++|||+.+ +.....+|+|+||||+.+.++++|||||||||+.||++||+||.++. |.|+|+....
T Consensus 104 Y~~Gi~~~~~~~~~~~~Hav~ivGyg~~~~g~~yWii~NSwG~~WG~~G~~~i~~~~~~~c~i~~~~~ 171 (174)
T smart00645 104 YKSGIYDHPGCGSGTLDHAVLIVGYGTEENGKDYWIVKNSWGTDWGENGYFRIARGKNNECGIEASVA 171 (174)
T ss_pred CcCeEECCCCCCCCcccEEEEEEEEeecCCCeeEEEEECCCCCCcccCeEEEEEcCCCCccCceeeee
Confidence 999999875 44444799999999994437889999999999999999999999987 9999977653
No 15
>PTZ00462 Serine-repeat antigen protein; Provisional
Probab=100.00 E-value=1.1e-45 Score=347.80 Aligned_cols=226 Identities=21% Similarity=0.359 Sum_probs=169.9
Q ss_pred CCCCCCCCCCCcHHHHHHHHHHHHHHHHHhCCCCCCCHHHHhhcCCCCCCCCCCCCC-hHHHHHHHHHcC-ccCCCcccC
Q 025695 9 VEILVIQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVNDLLACCGFLCGDGCDGGY-PISAWRYFVHHG-VVTEECDPY 86 (249)
Q Consensus 9 ~tpV~dQg~~gsCwafA~~~~lE~~~~~~~~~~~~lS~q~l~~~~~~~~~~~c~gg~-~~~al~~~~~~G-i~~e~~~py 86 (249)
..||||||.||+|||||+++++|+++.++++..+.||+|+|++|.....+.+|.||+ +..++.+++++| ++.|++|||
T Consensus 544 ~i~VKDQG~CGSCWAFASaaaLES~~cIkgg~~v~LSeQqLVDCs~~~gn~GC~GG~~~~efl~yI~e~GgLptESdYPY 623 (1004)
T PTZ00462 544 KIQIEDQGNCAISWIFASKYHLETIKCMKGYEPHAISALYIANCSKGEHKDRCDEGSNPLEFLQIIEDNGFLPADSNYLY 623 (1004)
T ss_pred CCCcccCCcchHHHHHHHHHHHHHHHHHhcCCCcccCHHHHHhcccccCCCCCCCCCcHHHHHHHHHHcCCCcccccCCC
Confidence 479999999999999999999999999998889999999999999754467999886 556779998886 788999999
Q ss_pred CCC---CCCCCCCCCCCCCCccccccccccccc--c--cccceEEeeeEE-eCC---------CHHHHHHHHHHcCCEEE
Q 025695 87 FDS---TGCSHPGCEPAYPTPKCVRKCVKKNQL--W--RNSKHYSISAYR-INS---------DPEDIMAEIYKNGPVEV 149 (249)
Q Consensus 87 ~~~---~~~~~~~~~~~~~~~~~~~~c~~~~~~--~--~~~~~~~i~~~~-~~~---------~~~~ik~~L~~~gPV~~ 149 (249)
... ..|......+. .|....+. + .......+..|. +.. .+++|+.+|+..|||+|
T Consensus 624 t~k~~~g~Cp~~~~~w~--------n~~~~~kll~~~~~~~~~i~~kgY~~~~s~~~~~n~d~~i~~IK~eI~~kGPVaV 695 (1004)
T PTZ00462 624 NYTKVGEDCPDEEDHWM--------NLLDHGKILNHNKKEPNSLDGKAYRAYESEHFHDKMDAFIKIIKDEIMNKGSVIA 695 (1004)
T ss_pred ccCCCCCCCCCCccccc--------ccccccccccccccccceeeccceEEecccccccchhhHHHHHHHHHHhcCCEEE
Confidence 642 11221100000 00000000 0 001122233443 221 14789999999999999
Q ss_pred EEEecccCcccc-CceEecC-CCCccCCeEEEEEEeccCC----CCccEEEEEccCCCCCCCCCeEEEEe-cCCccccCc
Q 025695 150 SFTVYEDFAHYK-SGVYKHI-TGDVMGGHAVKLIGWGTSD----DGEDYWILANQWNRSWGADGYFKIKR-GSNECGIEE 222 (249)
Q Consensus 150 ~~~~~~~~~~~~-~gi~~~~-~~~~~~~Hav~IVGy~~~~----~~~~~wivkNSWG~~WG~~Gy~~is~-~~~~c~~~~ 222 (249)
.|.+. +|+.|. +|||... ++....+|||+|||||... +++.|||||||||+.||++|||||.| ++|.||+++
T Consensus 696 ~IdAs-df~~Y~~sGIyv~~~Cgs~~~nHAVlIVGYGt~in~eg~gk~YWIVRNSWGt~WGEnGYFKI~r~g~n~CGin~ 774 (1004)
T PTZ00462 696 YIKAE-NVLGYEFNGKKVQNLCGDDTADHAVNIVGYGNYINDEDEKKSYWIVRNSWGKYWGDEGYFKVDMYGPSHCEDNF 774 (1004)
T ss_pred EEEee-hHHhhhcCCccccCCCCCCcCCceEEEEEecccccccCCCCceEEEEcCCCCCcCCCeEEEEEeCCCCCCccch
Confidence 99985 688884 8886554 5545579999999999531 25689999999999999999999998 789999999
Q ss_pred ceeEeeeCCCccccccccccc
Q 025695 223 DVVAGLPSSKNLVKEITSADM 243 (249)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~ 243 (249)
.+++++|++.++..+....+.
T Consensus 775 i~t~~~fn~d~~~~~~~~~~~ 795 (1004)
T PTZ00462 775 IHSVVIFNIDLPKNKKSPKKE 795 (1004)
T ss_pred heeeeeEeeccccccCCcccc
Confidence 999999999999888766544
No 16
>KOG1544 consensus Predicted cysteine proteinase TIN-ag [General function prediction only]
Probab=100.00 E-value=7.1e-42 Score=284.34 Aligned_cols=226 Identities=35% Similarity=0.645 Sum_probs=185.9
Q ss_pred CCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHhC--CCCCCCHHHHhhcCCCCCCCCCCCCChHHHHHHHHHcCccCCCcc
Q 025695 7 EHVEILVIQGHCGSCWAFGAVEALSDRFCIHFG--MNLSLSVNDLLACCGFLCGDGCDGGYPISAWRYFVHHGVVTEECD 84 (249)
Q Consensus 7 ~~~tpV~dQg~~gsCwafA~~~~lE~~~~~~~~--~~~~lS~q~l~~~~~~~~~~~c~gg~~~~al~~~~~~Gi~~e~~~ 84 (249)
|++.||.|||+|++.|||+++++...++.|+.. ....||+|+|+.|... ...||.||.+..|+=||.+.|+|...+|
T Consensus 221 ~liH~plDQgnCa~SWafSTaavasDRiAI~S~GR~t~~LSpQnLlSC~~h-~q~GC~gG~lDRAWWYlRKrGvVsdhCY 299 (470)
T KOG1544|consen 221 NLIHEPLDQGNCAGSWAFSTAAVASDRVAIHSLGRMTPVLSPQNLLSCDTH-QQQGCRGGRLDRAWWYLRKRGVVSDHCY 299 (470)
T ss_pred ccccCccccCCcccceeeeeehhccceeEEeeccccccccChHHhcchhhh-hhccCccCcccchheeeecccccccccc
Confidence 899999999999999999999999999988754 6678999999999873 3589999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCCCCCC-----cccccccccccccccccceEEeeeEEeCCCHHHHHHHHHHcCCEEEEEEecccCcc
Q 025695 85 PYFDSTGCSHPGCEPAYPT-----PKCVRKCVKKNQLWRNSKHYSISAYRINSDPEDIMAEIYKNGPVEVSFTVYEDFAH 159 (249)
Q Consensus 85 py~~~~~~~~~~~~~~~~~-----~~~~~~c~~~~~~~~~~~~~~i~~~~~~~~~~~ik~~L~~~gPV~~~~~~~~~~~~ 159 (249)
||......+.+.|-..... -.....|...... .+..+.-...|+|.+++++|+.+|+++|||-+.+.|+++|+.
T Consensus 300 P~~~dQ~~~~~~C~m~sR~~grgkRqat~~CPn~~~~-Sn~iyq~tPPYrVSSnE~eImkElM~NGPVQA~m~VHEDFF~ 378 (470)
T KOG1544|consen 300 PFSGDQAGPAPPCMMHSRAMGRGKRQATAHCPNSYVN-SNDIYQVTPPYRVSSNEKEIMKELMENGPVQALMEVHEDFFL 378 (470)
T ss_pred cccCCCCCCCCCceeeccccCcccccccCcCCCcccc-cCceeeecCCeeccCCHHHHHHHHHhCCChhhhhhhhhhhhh
Confidence 9977766677777665541 1111223322211 112233445677999999999999999999999999999999
Q ss_pred ccCceEecCCC--------CccCCeEEEEEEeccCCC----CccEEEEEccCCCCCCCCCeEEEEecCCccccCcceeEe
Q 025695 160 YKSGVYKHITG--------DVMGGHAVKLIGWGTSDD----GEDYWILANQWNRSWGADGYFKIKRGSNECGIEEDVVAG 227 (249)
Q Consensus 160 ~~~gi~~~~~~--------~~~~~Hav~IVGy~~~~~----~~~~wivkNSWG~~WG~~Gy~~is~~~~~c~~~~~~~~~ 227 (249)
|++|||.+... ...+.|+|-|+|||.+.. ..+|||..||||+.||++|||+|-||.|+|.||++++.+
T Consensus 379 YkgGiY~H~~~~~~~~e~yr~~gtHsVk~tGWG~~~~~~G~~~KyW~aANSWG~~WGE~GYFriLRGvNecdIEsfvIgA 458 (470)
T KOG1544|consen 379 YKGGIYSHTPVSLGRPERYRRHGTHSVKITGWGEETLPDGRTLKYWTAANSWGPAWGERGYFRILRGVNECDIESFVIGA 458 (470)
T ss_pred hccceeeccccccCCchhhhhcccceEEEeecccccCCCCCeeEEEEeecccccccccCceEEEeccccchhhhHhhhhh
Confidence 99999986542 234789999999995432 357999999999999999999999999999999999999
Q ss_pred eeCCCcc
Q 025695 228 LPSSKNL 234 (249)
Q Consensus 228 ~~~~~~~ 234 (249)
|..+++.
T Consensus 459 WGr~~m~ 465 (470)
T KOG1544|consen 459 WGRVGME 465 (470)
T ss_pred hhccccc
Confidence 9977664
No 17
>COG4870 Cysteine protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=5.2e-32 Score=230.22 Aligned_cols=213 Identities=24% Similarity=0.297 Sum_probs=134.8
Q ss_pred CCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHhCCCCCCCHHHHhhcCCCCCCCCCC-----CCChHHHH-HHHH
Q 025695 1 MPFTNSEHVEILVIQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVNDLLACCGFLCGDGCD-----GGYPISAW-RYFV 74 (249)
Q Consensus 1 ~d~~~~~~~tpV~dQg~~gsCwafA~~~~lE~~~~~~~~~~~~lS~q~l~~~~~~~~~~~c~-----gg~~~~al-~~~~ 74 (249)
+|||..|.++||||||.||+|||||+++++|+.+.-.. ...+|+..+..........+|+ +|....+. ....
T Consensus 103 fd~r~~g~vs~v~dQg~~Gscwaf~t~~sles~l~~~~--~w~~s~~nm~~ll~~~ye~~fd~~~~d~g~~~m~~a~l~e 180 (372)
T COG4870 103 FDRRDEGKVSPVKDQGSGGSCWAFATTRSLESYLNPES--AWDFSENNMKNLLGVPYEKGFDYTSNDGGNADMSAAYLTE 180 (372)
T ss_pred eeeeccCCcccccccCcccceEeeeehhhhhheecccc--cccccccchhhhcCCCccccCCCccccCCccccccccccc
Confidence 68999999999999999999999999999999985443 4567776665544322122222 44433333 3344
Q ss_pred HcCccCCCcccCCCCCCCCCCCCCCCCCCcccccccccccccccccceEEeeeEE----eCCCHHHHHHHHHHcCCEEEE
Q 025695 75 HHGVVTEECDPYFDSTGCSHPGCEPAYPTPKCVRKCVKKNQLWRNSKHYSISAYR----INSDPEDIMAEIYKNGPVEVS 150 (249)
Q Consensus 75 ~~Gi~~e~~~py~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~i~~~~----~~~~~~~ik~~L~~~gPV~~~ 150 (249)
..|.+.|...||..... .|....+. -++.....+. -..+.-.|++.+...|.+...
T Consensus 181 ~sgpv~et~d~y~~~s~-----------------~~~~~~p~---~k~~~~~~~i~~~~~~LdnG~i~~~~~~yg~~s~~ 240 (372)
T COG4870 181 WSGPVYETDDPYSENSY-----------------FSPTNLPV---TKHVQEAQIIPSRKKYLDNGNIKAMFGFYGAVSSS 240 (372)
T ss_pred cCCcchhhcCccccccc-----------------cCCcCCch---hhccccceecccchhhhcccchHHHHhhhccccce
Confidence 56889999999965411 11110000 0000111111 111224477777777777655
Q ss_pred EEec-ccCccccCceEecCCCCccCCeEEEEEEeccC---------CCCccEEEEEccCCCCCCCCCeEEEEecCCcccc
Q 025695 151 FTVY-EDFAHYKSGVYKHITGDVMGGHAVKLIGWGTS---------DDGEDYWILANQWNRSWGADGYFKIKRGSNECGI 220 (249)
Q Consensus 151 ~~~~-~~~~~~~~gi~~~~~~~~~~~Hav~IVGy~~~---------~~~~~~wivkNSWG~~WG~~Gy~~is~~~~~c~~ 220 (249)
+.+. ..+.....+.+..... ...+|||+||||||. ..+.++||||||||++||++|||||+|..-.-+
T Consensus 241 ~~id~~~~~~~~~~~~~~~s~-~~~gHAv~iVGyDDs~~~n~~~~~~~g~GAfiikNSWGt~wG~~GYfwisY~ya~~g- 318 (372)
T COG4870 241 MYIDATNSLGICIPYPYVDSG-ENWGHAVLIVGYDDSFDINNFKYGPPGDGAFIIKNSWGTNWGENGYFWISYYYALNG- 318 (372)
T ss_pred eEEecccccccccCCCCCCcc-ccccceEEEEeccccccccccccCCCCCceEEEECccccccccCceEEEEeeecccc-
Confidence 5542 1222223333333333 667999999999962 246789999999999999999999999743333
Q ss_pred CcceeEeeeCCCcccccccccccc
Q 025695 221 EEDVVAGLPSSKNLVKEITSADMF 244 (249)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~ 244 (249)
+ .+..++...++|+|+.
T Consensus 319 ~-------a~~~D~y~~i~qydpl 335 (372)
T COG4870 319 D-------AEALDFYVYIYQYDPL 335 (372)
T ss_pred c-------ccccCcceEEeeccCc
Confidence 1 4567777888887764
No 18
>cd00585 Peptidase_C1B Peptidase C1B subfamily (MEROPS database nomenclature); composed of eukaryotic bleomycin hydrolases (BH) and bacterial aminopeptidases C (pepC). The proteins of this subfamily contain a large insert relative to the C1A peptidase (papain) subfamily. BH is a cysteine peptidase that detoxifies bleomycin by hydrolysis of an amide group. It acts as a carboxypeptidase on its C-terminus to convert itself into an aminopeptidase and peptide ligase. BH is found in all tissues in mammals as well as in many other eukaryotes. Bleomycin, a glycopeptide derived from the fungus Streptomyces verticullus, is an effective anticancer drug due to its ability to induce DNA strand breaks. Human BH is the major cause of tumor cell resistance to bleomycin chemotherapy, and is also genetically linked to Alzheimer's disease. In addition to its peptidase activity, the yeast BH (Gal6) binds DNA and acts as a repressor in the Gal4 regulatory system. BH forms a hexameric ring barrel structure w
Probab=99.94 E-value=7.4e-27 Score=208.34 Aligned_cols=203 Identities=23% Similarity=0.309 Sum_probs=135.2
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHHHHHHH-hCCCCCCCHHHHhhcCC----------------CC----------CCCCCC
Q 025695 10 EILVIQGHCGSCWAFGAVEALSDRFCIH-FGMNLSLSVNDLLACCG----------------FL----------CGDGCD 62 (249)
Q Consensus 10 tpV~dQg~~gsCwafA~~~~lE~~~~~~-~~~~~~lS~q~l~~~~~----------------~~----------~~~~c~ 62 (249)
+||+||+..|.||.||++..|+..+.+. +...++||+.|+..-.+ .. ...-.+
T Consensus 55 ~~vtnQ~~SGrCW~FA~Ln~lr~~~~k~~~~~~felSq~Yl~f~dklEkaN~fle~ii~~~~~~~~~R~v~~ll~~~~~D 134 (437)
T cd00585 55 EPVTNQKSSGRCWLFAALNVLRHQFMKKLNLKEFEFSQSYLFFWDKLEKANYFLENIIETADEPLDDRLVQFLLANPQND 134 (437)
T ss_pred CCcccCCCCchhHHHHCHHHHHHHHHHHcCCCCEEeCcHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHhCCcCC
Confidence 5999999999999999999999998774 45889999999876211 00 133457
Q ss_pred CCChHHHHHHHHHcCccCCCcccCCCCCCCCC----------------------CCCCCC-----CC-------------
Q 025695 63 GGYPISAWRYFVHHGVVTEECDPYFDSTGCSH----------------------PGCEPA-----YP------------- 102 (249)
Q Consensus 63 gg~~~~al~~~~~~Gi~~e~~~py~~~~~~~~----------------------~~~~~~-----~~------------- 102 (249)
||.-.-++..++++|+++++.||-...+.-+. ...+.. ..
T Consensus 135 GGqw~m~~~li~KYGvVPk~~~pet~~s~~t~~~n~~L~~kLr~~a~~lr~~~~~~~~~~~l~~~~~~~~~~iy~il~~~ 214 (437)
T cd00585 135 GGQWDMLVNLIEKYGLVPKSVMPESFNSENSRRLNYLLNRKLREDALELRKLVAKGASKEEIEAKKEEMLKEVYRILAIA 214 (437)
T ss_pred CCchHHHHHHHHHcCCCcccccCCCcCccchHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999743211100 000000 00
Q ss_pred Ccccccccccc---------------------------ccccc---c-----c---ceEEee-----------eEEeCCC
Q 025695 103 TPKCVRKCVKK---------------------------NQLWR---N-----S---KHYSIS-----------AYRINSD 133 (249)
Q Consensus 103 ~~~~~~~c~~~---------------------------~~~~~---~-----~---~~~~i~-----------~~~~~~~ 133 (249)
.+..+...... ...|. + . +.+.+. .| +...
T Consensus 215 lG~pP~~F~~~y~dkd~~~~~~~~~TP~~F~~~yv~~~~~dyV~l~~~p~~~~p~~~~y~ve~~~Nv~~g~~~~y-~Nvp 293 (437)
T cd00585 215 LGEPPEKFDWEYRDKDKKYHEIKELTPLEFYKKYVKFDLDDYVSLINDPRPDKPYNKLYTVEYLGNVVGGRPILY-LNVP 293 (437)
T ss_pred cCCCCceEEEEEEeCCCCeeeCCCcCHHHHHHHhcCCCccceEEEEeCCCCCCCCCceEEEecCCcccccccceE-EecC
Confidence 00111111100 00000 0 0 001110 11 1113
Q ss_pred HHHHH----HHHHHcCCEEEEEEecccCccccCceEecC---------------------CCCccCCeEEEEEEeccCCC
Q 025695 134 PEDIM----AEIYKNGPVEVSFTVYEDFAHYKSGVYKHI---------------------TGDVMGGHAVKLIGWGTSDD 188 (249)
Q Consensus 134 ~~~ik----~~L~~~gPV~~~~~~~~~~~~~~~gi~~~~---------------------~~~~~~~Hav~IVGy~~~~~ 188 (249)
++.++ .+|.+++||.++.+++ .|..+++||++.. ...+..+|||+||||+.+++
T Consensus 294 ~d~l~~~~~~~L~~g~pV~~g~Dv~-~~~~~k~GI~d~~~~~~~~~f~~~~~~~KaeRl~~~es~~tHAM~ivGv~~D~~ 372 (437)
T cd00585 294 MDVLKKAAIAQLKDGEPVWFGCDVG-KFSDRKSGILDTDLFDYELLFGIDFGLNKAERLDYGESLMTHAMVLTGVDLDED 372 (437)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEEcC-hhhccCCccccCcccchhhhcCccccCCHHHHHhhcCCcCCeEEEEEEEEecCC
Confidence 44455 7888899999999996 5678999998543 22344689999999997776
Q ss_pred Cc-cEEEEEccCCCCCCCCCeEEEEec
Q 025695 189 GE-DYWILANQWNRSWGADGYFKIKRG 214 (249)
Q Consensus 189 ~~-~~wivkNSWG~~WG~~Gy~~is~~ 214 (249)
|+ .||+||||||+.||++||++|+.+
T Consensus 373 g~p~yw~VkNSWG~~~G~~Gy~~ms~~ 399 (437)
T cd00585 373 GKPVKWKVENSWGEKVGKKGYFVMSDD 399 (437)
T ss_pred CCcceEEEEcccCCCCCCCcceehhHH
Confidence 76 699999999999999999999974
No 19
>PF03051 Peptidase_C1_2: Peptidase C1-like family This family is a subfamily of the Prosite entry; InterPro: IPR004134 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of proteins belong to MEROPS peptidase family C1, sub-family C1B (bleomycin hydrolase, clan CA). This family contains prokaryotic and eukaryotic aminopeptidases and bleomycin hydrolases.; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis; PDB: 3PW3_F 2CB5_A 1CB5_C 2DZZ_A 2E02_A 2E01_A 2E03_A 1A6R_A 1GCB_A 3GCB_A ....
Probab=99.82 E-value=1e-19 Score=162.75 Aligned_cols=204 Identities=22% Similarity=0.294 Sum_probs=114.9
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHHHHHHHhC-CCCCCCHHHHhh----------------cCCCC----------CCCCCC
Q 025695 10 EILVIQGHCGSCWAFGAVEALSDRFCIHFG-MNLSLSVNDLLA----------------CCGFL----------CGDGCD 62 (249)
Q Consensus 10 tpV~dQg~~gsCwafA~~~~lE~~~~~~~~-~~~~lS~q~l~~----------------~~~~~----------~~~~c~ 62 (249)
+||.||+..|.||.||++..|+..+.++.+ ....||+.|+.. ..... ...-.+
T Consensus 56 ~~vtnQk~SGRCW~FA~lN~lR~~~~kk~~l~~felSq~Yl~F~DKlEKaN~fLe~ii~~~~~~~d~R~v~~ll~~~~~D 135 (438)
T PF03051_consen 56 GPVTNQKSSGRCWLFAALNVLRHEIMKKLNLKDFELSQNYLFFWDKLEKANYFLENIIDTADEPLDDRLVRFLLKNPVSD 135 (438)
T ss_dssp -S--B--BSSTHHHHHHHHHHHHHHHHHCT-SS--B-HHHHHHHHHHHHHHHHHHHHHHCCTS-TTSHHHHHHHHSTT-S
T ss_pred CCCCCCCCCCCcchhhchHHHHHHHHHHcCCCceEeechHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHhcCCCC
Confidence 499999999999999999999999987765 889999999852 12110 022457
Q ss_pred CCChHHHHHHHHHcCccCCCcccCCCCCCCCC----------------------CCCCCCCC------------------
Q 025695 63 GGYPISAWRYFVHHGVVTEECDPYFDSTGCSH----------------------PGCEPAYP------------------ 102 (249)
Q Consensus 63 gg~~~~al~~~~~~Gi~~e~~~py~~~~~~~~----------------------~~~~~~~~------------------ 102 (249)
||.-..+...+++||+|+.+.||-...+..+. ........
T Consensus 136 GGqw~~~~nli~KYGvVPk~~mpet~~s~~t~~~n~~l~~~Lr~~a~~LR~~~~~~~~~~~l~~~k~~~l~~iy~il~~~ 215 (438)
T PF03051_consen 136 GGQWDMVVNLIKKYGVVPKSVMPETFSSSNTSEMNEMLNTKLREYALELRKLVKAGKSEEELRKLKEEMLAEIYRILAIY 215 (438)
T ss_dssp -B-HHHHHHHHHHH---BGGGSTTGCGCHBHHHHHHHHHHHHHHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHcCcCcHhhCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99888899999999999999999853311111 00000000
Q ss_pred Ccccccccccc---------------------------ccccc-----------ccceEEe-----------eeE-EeCC
Q 025695 103 TPKCVRKCVKK---------------------------NQLWR-----------NSKHYSI-----------SAY-RINS 132 (249)
Q Consensus 103 ~~~~~~~c~~~---------------------------~~~~~-----------~~~~~~i-----------~~~-~~~~ 132 (249)
.+.++...... ...|. -.+.+.+ ..| +++-
T Consensus 216 lG~PP~~F~~ey~dkd~~~~~~~~~TP~eF~~kyv~~~~ddyVsLin~P~~~~py~~~y~ve~~~Nv~~g~~~~ylNvpi 295 (438)
T PF03051_consen 216 LGEPPEKFTWEYRDKDKKYHRGKNYTPLEFYKKYVGFDLDDYVSLINDPRSHHPYNKLYTVEYLGNVVGGRPVRYLNVPI 295 (438)
T ss_dssp H---SSSEEEEEE-TTS-EEEEEEE-HHHHHHHCTTS-GGGEEEEE--T-TTS-TTCEEEETTTTSSTT-EEEEEEE--H
T ss_pred cCCCChheeEEEeccccccccccccCchhHHHHHhCCCCcceEEEeeCCCccCccceeEEEccCCCEECCcceeEeccCH
Confidence 00011111100 00000 0000100 011 1222
Q ss_pred C--HHHHHHHHHHcCCEEEEEEecccCccccCceEecCC---------------------CCccCCeEEEEEEeccCCCC
Q 025695 133 D--PEDIMAEIYKNGPVEVSFTVYEDFAHYKSGVYKHIT---------------------GDVMGGHAVKLIGWGTSDDG 189 (249)
Q Consensus 133 ~--~~~ik~~L~~~gPV~~~~~~~~~~~~~~~gi~~~~~---------------------~~~~~~Hav~IVGy~~~~~~ 189 (249)
+ .+.+..+|..+.||-++-+|.. +.+.+.||.+... ..+..+|||+|||.+.|++|
T Consensus 296 d~lk~~~i~~Lk~G~~VwfgcDV~k-~~~~k~Gi~D~~~~d~~~~fg~~~~~~K~~Rl~~~eS~~tHAM~itGv~~D~~g 374 (438)
T PF03051_consen 296 DELKDAAIKSLKAGYPVWFGCDVGK-FFDRKNGIMDTDLYDYDSLFGVDFNMSKAERLDYGESTMTHAMVITGVDLDEDG 374 (438)
T ss_dssp HHHHHHHHHHHHTT--EEEEEETTT-TEETTTTEE-TTSB-HHHHHT--S-S-HHHHHHTTSS--EEEEEEEEEEE-TTS
T ss_pred HHHHHHHHHHHHcCCcEEEeccCCc-cccccchhhccchhhhhhhhccccccCHHHHHHhCCCCCceeEEEEEEEeccCC
Confidence 2 2677788888999999999965 4566778775322 12445899999999987887
Q ss_pred c-cEEEEEccCCCCCCCCCeEEEEec
Q 025695 190 E-DYWILANQWNRSWGADGYFKIKRG 214 (249)
Q Consensus 190 ~-~~wivkNSWG~~WG~~Gy~~is~~ 214 (249)
+ .+|+|+||||+..|..||++|+..
T Consensus 375 ~p~~wkVeNSWG~~~g~kGy~~msd~ 400 (438)
T PF03051_consen 375 KPVRWKVENSWGTDNGDKGYFYMSDD 400 (438)
T ss_dssp SEEEEEEE-SBTTTSTBTTEEEEEHH
T ss_pred CeeEEEEEcCCCCCCCCCcEEEECHH
Confidence 6 599999999999999999999853
No 20
>COG3579 PepC Aminopeptidase C [Amino acid transport and metabolism]
Probab=99.25 E-value=3.3e-11 Score=102.16 Aligned_cols=74 Identities=23% Similarity=0.487 Sum_probs=53.1
Q ss_pred HHHHHHcCCEEEEEEecccCccccCceEecC-----C----------------CCccCCeEEEEEEeccCCCCcc-EEEE
Q 025695 138 MAEIYKNGPVEVSFTVYEDFAHYKSGVYKHI-----T----------------GDVMGGHAVKLIGWGTSDDGED-YWIL 195 (249)
Q Consensus 138 k~~L~~~gPV~~~~~~~~~~~~~~~gi~~~~-----~----------------~~~~~~Hav~IVGy~~~~~~~~-~wiv 195 (249)
..+|..+-+|=++-++ ..+..-+.||.+.. . +.+.-.|||+|.|.+-+++|.. -|.|
T Consensus 305 ~~q~qagetVwFG~dv-gq~s~rk~Gimdtd~~~~~s~~g~~~~q~KA~RldY~eSLmTHAMvlTGvd~d~~g~p~rwkV 383 (444)
T COG3579 305 IKQMQAGETVWFGCDV-GQLSDRKTGIMDTDIYDYESSLGINLTQDKAGRLDYGESLMTHAMVLTGVDLDETGNPLRWKV 383 (444)
T ss_pred HHHHhcCCcEEeecCc-hhhcccccceeeehhccchhhhCCCcccchhhccccchHHHHHHHHhhccccccCCCceeeEe
Confidence 3445567788888877 34455555654311 0 1123369999999997777654 8999
Q ss_pred EccCCCCCCCCCeEEEE
Q 025695 196 ANQWNRSWGADGYFKIK 212 (249)
Q Consensus 196 kNSWG~~WG~~Gy~~is 212 (249)
.||||++=|.+|||-++
T Consensus 384 ENSWG~d~G~~GyfvaS 400 (444)
T COG3579 384 ENSWGKDVGKKGYFVAS 400 (444)
T ss_pred ecccccccCCCceEeeh
Confidence 99999999999999987
No 21
>KOG4128 consensus Bleomycin hydrolases and aminopeptidases of cysteine protease family [Amino acid transport and metabolism]
Probab=98.06 E-value=2.2e-06 Score=73.07 Aligned_cols=78 Identities=21% Similarity=0.225 Sum_probs=57.1
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHHHHHHHhC-CCCCCCHHHHhhcCC--------------------C--------CCCCC
Q 025695 10 EILVIQGHCGSCWAFGAVEALSDRFCIHFG-MNLSLSVNDLLACCG--------------------F--------LCGDG 60 (249)
Q Consensus 10 tpV~dQg~~gsCwafA~~~~lE~~~~~~~~-~~~~lS~q~l~~~~~--------------------~--------~~~~~ 60 (249)
+||-||.+.|-||.|+.+..+--.+.++-+ ....||..+|+.-.+ . -.+..
T Consensus 63 ~pvtnqkssGrcWift~ln~lrl~~~~kLnl~eFElSqayLFFwdKlErcnyFL~~vvd~a~r~ep~DgRlvq~Ll~nP~ 142 (457)
T KOG4128|consen 63 QPVTNQKSSGRCWIFTGLNLLRLEMDRKLNLPEFELSQAYLFFWDKLERCNYFLWTVVDLAMRCEPLDGRLVQNLLKNPV 142 (457)
T ss_pred cccccCcCCCceEEEechhHHHHHHHhcCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccHHHHHHHhCCC
Confidence 699999999999999999877655544433 778899888744221 0 01233
Q ss_pred CCCCChHHHHHHHHHcCccCCCcccCC
Q 025695 61 CDGGYPISAWRYFVHHGVVTEECDPYF 87 (249)
Q Consensus 61 c~gg~~~~al~~~~~~Gi~~e~~~py~ 87 (249)
-+||.-.-.++.++++|+.+..+|+-.
T Consensus 143 ~DGGqw~MfvNlVkKYGviPKkcy~~s 169 (457)
T KOG4128|consen 143 PDGGQWQMFVNLVKKYGVIPKKCYLHS 169 (457)
T ss_pred CCCchHHHHHHHHHHhCCCcHHhcccc
Confidence 457777778888999999999988764
No 22
>PF13529 Peptidase_C39_2: Peptidase_C39 like family; PDB: 3ERV_A.
Probab=97.69 E-value=0.00029 Score=53.29 Aligned_cols=59 Identities=29% Similarity=0.460 Sum_probs=34.4
Q ss_pred CCCHHHHHHHHHHcCCEEEEEEecccCccccCceEecCCCCccCCeEEEEEEeccCCCCccEEEEEccC
Q 025695 131 NSDPEDIMAEIYKNGPVEVSFTVYEDFAHYKSGVYKHITGDVMGGHAVKLIGWGTSDDGEDYWILANQW 199 (249)
Q Consensus 131 ~~~~~~ik~~L~~~gPV~~~~~~~~~~~~~~~gi~~~~~~~~~~~Hav~IVGy~~~~~~~~~wivkNSW 199 (249)
..+.+.|+.+|.++.||++.+.....-. ....+ ....++|.|+|+||+ +.. +++|..+|
T Consensus 86 ~~~~~~i~~~i~~G~Pvi~~~~~~~~~~--~~~~~----~~~~~~H~vvi~Gy~---~~~-~~~v~DP~ 144 (144)
T PF13529_consen 86 DASFDDIKQEIDAGRPVIVSVNSGWRPP--NGDGY----DGTYGGHYVVIIGYD---EDG-YVYVNDPW 144 (144)
T ss_dssp TS-HHHHHHHHHTT--EEEEEETTSS----TTEEE----EE-TTEEEEEEEEE----SSE--EEEE-TT
T ss_pred CCcHHHHHHHHHCCCcEEEEEEcccccC--CCCCc----CCCcCCEEEEEEEEe---CCC-EEEEeCCC
Confidence 3455899999999999999998531100 11111 122358999999999 222 78888877
No 23
>PF05543 Peptidase_C47: Staphopain peptidase C47; InterPro: IPR008750 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the peptidase family C47 (staphopain family, clan CA). The type example are the staphopains, which are one of four major families of proteinases secreted by the Gram-positive Staphylococcus aureus. These staphylococcal cysteine proteases are secreted as preproenzymes that are proteolytically cleaved to generate the mature enzyme [, , ].; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 1X9Y_D 1Y4H_B 1PXV_B 1CV8_A.
Probab=97.60 E-value=0.00046 Score=54.14 Aligned_cols=133 Identities=17% Similarity=0.202 Sum_probs=76.6
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHHHH--------HhCCCCCCCHHHHhhcCCCCCCCCCCCCChHHHHHHHHHcCccCCCc
Q 025695 12 LVIQGHCGSCWAFGAVEALSDRFCI--------HFGMNLSLSVNDLLACCGFLCGDGCDGGYPISAWRYFVHHGVVTEEC 83 (249)
Q Consensus 12 V~dQg~~gsCwafA~~~~lE~~~~~--------~~~~~~~lS~q~l~~~~~~~~~~~c~gg~~~~al~~~~~~Gi~~e~~ 83 (249)
-..||.-+-|-+||.+++|.+.... ++.....+|+++|..+ +-.+...++|.+..|..+.
T Consensus 16 ~EtQg~~pWCa~Ya~aailN~~~~~~~~~A~~iMr~~yPn~s~~~l~~~----------~~~~~~~i~y~ks~g~~~~-- 83 (175)
T PF05543_consen 16 RETQGYNPWCAGYAMAAILNATTNTKIYNAKDIMRYLYPNVSEEQLKFT----------SLTPNQMIKYAKSQGRNPQ-- 83 (175)
T ss_dssp ----SSSS-HHHHHHHHHHHHHCT-S---HHHHHHHHSTTS-CCCHHH------------B-HHHHHHHHHHTTEEEE--
T ss_pred eeccCcCcHHHHHHHHHHHHhhhCcCcCCHHHHHHHHCCCCCHHHHhhc----------CCCHHHHHHHHHHcCcchh--
Confidence 3578999999999999998876422 1223344455555333 2345677888777664321
Q ss_pred ccCCCCCCCCCCCCCCCCCCcccccccccccccccccceEEeeeEEeCCCHHHHHHHHHHcCCEEEEEEecccCccccCc
Q 025695 84 DPYFDSTGCSHPGCEPAYPTPKCVRKCVKKNQLWRNSKHYSISAYRINSDPEDIMAEIYKNGPVEVSFTVYEDFAHYKSG 163 (249)
Q Consensus 84 ~py~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~i~~~~~~~~~~~ik~~L~~~gPV~~~~~~~~~~~~~~~g 163 (249)
|.. ...+.+++++++.++.|+.+.....+.-
T Consensus 84 --~~n-----------------------------------------~~~s~~eV~~~~~~nk~i~i~~~~v~~~------ 114 (175)
T PF05543_consen 84 --YNN-----------------------------------------RMPSFDEVKKLIDNNKGIAILADRVEQT------ 114 (175)
T ss_dssp --EEC-----------------------------------------S---HHHHHHHHHTT-EEEEEEEETTSC------
T ss_pred --Hhc-----------------------------------------CCCCHHHHHHHHHcCCCeEEEecccccC------
Confidence 111 1123488999999999998877643211
Q ss_pred eEecCCCCccCCeEEEEEEeccCCCCccEEEEEccCCCCCCCCCeEEEEecCC
Q 025695 164 VYKHITGDVMGGHAVKLIGWGTSDDGEDYWILANQWNRSWGADGYFKIKRGSN 216 (249)
Q Consensus 164 i~~~~~~~~~~~Hav~IVGy~~~~~~~~~wivkNSWG~~WG~~Gy~~is~~~~ 216 (249)
.....+|||+||||....++.++.++-|=|= ++++-++-+.+
T Consensus 115 ------~~~~~gHAlavvGya~~~~g~~~y~~WNPW~-----~~~~~~sa~s~ 156 (175)
T PF05543_consen 115 ------NGPHAGHALAVVGYAKPNNGQKTYYFWNPWW-----NDVMIQSAKSN 156 (175)
T ss_dssp ------TTB--EEEEEEEEEEEETTSEEEEEEE-TT------SS-EEEETT--
T ss_pred ------CCCccceeEEEEeeeecCCCCeEEEEeCCcc-----CCcEEEecCCC
Confidence 1233589999999995567799999999984 44666666543
No 24
>COG4990 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.60 E-value=0.028 Score=44.32 Aligned_cols=49 Identities=18% Similarity=0.306 Sum_probs=39.2
Q ss_pred CCHHHHHHHHHHcCCEEEEEEecccCccccCceEecCCCCccCCeEEEEEEeccCCCCccEEEEEccCCC
Q 025695 132 SDPEDIMAEIYKNGPVEVSFTVYEDFAHYKSGVYKHITGDVMGGHAVKLIGWGTSDDGEDYWILANQWNR 201 (249)
Q Consensus 132 ~~~~~ik~~L~~~gPV~~~~~~~~~~~~~~~gi~~~~~~~~~~~Hav~IVGy~~~~~~~~~wivkNSWG~ 201 (249)
.++.+||.+|.++.||.+-.....+ +.-|+|+|+||| +.++..-++||-
T Consensus 121 ksl~~ik~ql~kg~PV~iw~T~~~~----------------~s~H~v~itgyD-----k~n~yynDpyG~ 169 (195)
T COG4990 121 KSLSDIKGQLLKGRPVVIWVTNFHS----------------YSIHSVLITGYD-----KYNIYYNDPYGY 169 (195)
T ss_pred CcHHHHHHHHhcCCcEEEEEecccc----------------cceeeeEeeccc-----ccceEecccccc
Confidence 5789999999999999876655222 236999999999 778888888863
No 25
>PF09778 Guanylate_cyc_2: Guanylylate cyclase; InterPro: IPR018616 Members of this family of proteins catalyse the conversion of guanosine triphosphate (GTP) to 3',5'-cyclic guanosine monophosphate (cGMP) and pyrophosphate.
Probab=94.72 E-value=0.13 Score=42.07 Aligned_cols=64 Identities=17% Similarity=0.223 Sum_probs=40.7
Q ss_pred eCCCHHHHHHHHHHcCCEEEEEEecccCc--cccCceEe---c---CCCCccCCeEEEEEEeccCCCCccEEEEEc
Q 025695 130 INSDPEDIMAEIYKNGPVEVSFTVYEDFA--HYKSGVYK---H---ITGDVMGGHAVKLIGWGTSDDGEDYWILAN 197 (249)
Q Consensus 130 ~~~~~~~ik~~L~~~gPV~~~~~~~~~~~--~~~~gi~~---~---~~~~~~~~Hav~IVGy~~~~~~~~~wivkN 197 (249)
..-..++|..+|..++|+++-++.. -.. .-+.-... . .....+.||-|+|+||+ -..+-|++||
T Consensus 109 rsvs~~ei~~hl~~g~~aIvLVd~~-~L~C~~Ck~~~~~~~~~~~~~~~~~Y~GHYVVlcGyd---~~~~~~~yrd 180 (212)
T PF09778_consen 109 RSVSIQEIIEHLSSGGPAIVLVDAS-LLHCDLCKSNCFDPIGSKCFGRSPDYQGHYVVLCGYD---AATKEFEYRD 180 (212)
T ss_pred eeccHHHHHHHHhCCCcEEEEEccc-cccChhhcccccccccccccCCCCCccEEEEEEEeec---CCCCeEEEeC
Confidence 3456799999999999998888763 111 00111111 1 11345679999999999 4445567766
No 26
>PF14399 Transpep_BrtH: NlpC/p60-like transpeptidase
Probab=92.86 E-value=0.32 Score=42.18 Aligned_cols=66 Identities=14% Similarity=0.283 Sum_probs=41.1
Q ss_pred HHHHHHHHHHcCCEEEEEEecccCccccCceEecCCCCccCCeEEEEEEeccCCCCccEEEEEccCCCCCCCCCeEEEEe
Q 025695 134 PEDIMAEIYKNGPVEVSFTVYEDFAHYKSGVYKHITGDVMGGHAVKLIGWGTSDDGEDYWILANQWNRSWGADGYFKIKR 213 (249)
Q Consensus 134 ~~~ik~~L~~~gPV~~~~~~~~~~~~~~~gi~~~~~~~~~~~Hav~IVGy~~~~~~~~~wivkNSWG~~WG~~Gy~~is~ 213 (249)
.+.|++.|.++.||++.++.. +..|...-+ .....+|.|+|+||| ++ ++.+.++-+ ....+..+++
T Consensus 78 ~~~l~~~l~~g~pv~~~~D~~--~lpy~~~~~----~~~~~~H~i~v~G~d-~~-~~~~~v~D~------~~~~~~~~~~ 143 (317)
T PF14399_consen 78 WEELKEALDAGRPVIVWVDMY--YLPYRPNYY----KKHHADHYIVVYGYD-EE-EDVFYVSDP------PSYEPGRLPY 143 (317)
T ss_pred HHHHHHHHhCCCceEEEeccc--cCCCCcccc----ccccCCcEEEEEEEe-CC-CCEEEEEcC------CCCcceeecH
Confidence 478999999999999998873 233332111 223358999999999 32 344555433 2234556654
No 27
>PF12385 Peptidase_C70: Papain-like cysteine protease AvrRpt2; InterPro: IPR022118 This is a family of cysteine proteases, found in actinobacteria, protobacteria and firmicutes. Papain-like cysteine proteases play a crucial role in plant-pathogen/pest interactions. On entering the host they act on non-self substrates, thereby manipulating the host to evade proteolysis []. AvrRpt2 from Pseudomonas syringae pv tomato DC3000 triggers resistance to P. syringae-2-dependent defence responses, including hypersensitive cell death, by cleaving the Arabidopsis RIN4 protein which is monitored by the cognate resistance protein RPS2 [].
Probab=91.98 E-value=3.4 Score=32.18 Aligned_cols=37 Identities=22% Similarity=0.284 Sum_probs=28.2
Q ss_pred HHHHHHHHHHcCCEEEEEEecccCccccCceEecCCCCccCCeEEEEEEecc
Q 025695 134 PEDIMAEIYKNGPVEVSFTVYEDFAHYKSGVYKHITGDVMGGHAVKLIGWGT 185 (249)
Q Consensus 134 ~~~ik~~L~~~gPV~~~~~~~~~~~~~~~gi~~~~~~~~~~~Hav~IVGy~~ 185 (249)
.+.+...|.++||+-++..... .....|+++|+|-+.
T Consensus 98 ~e~~~~LL~~yGPLwv~~~~P~---------------~~~~~H~~ViTGI~~ 134 (166)
T PF12385_consen 98 AEGLANLLREYGPLWVAWEAPG---------------DSWVAHASVITGIDG 134 (166)
T ss_pred HHHHHHHHHHcCCeEEEecCCC---------------CcceeeEEEEEeecC
Confidence 3889999999999999855531 122369999999883
No 28
>cd00044 CysPc Calpains, domains IIa, IIb; calcium-dependent cytoplasmic cysteine proteinases, papain-like. Functions in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction.
Probab=88.81 E-value=1.1 Score=39.02 Aligned_cols=27 Identities=26% Similarity=0.399 Sum_probs=23.0
Q ss_pred CCeEEEEEEeccCCC--CccEEEEEccCCC
Q 025695 174 GGHAVKLIGWGTSDD--GEDYWILANQWNR 201 (249)
Q Consensus 174 ~~Hav~IVGy~~~~~--~~~~wivkNSWG~ 201 (249)
.+||-.|++.. ..+ +.+...|||-||.
T Consensus 235 ~~HaY~Vl~~~-~~~~~~~~lv~lrNPWg~ 263 (315)
T cd00044 235 KGHAYSVLDVR-EVQEEGLRLLRLRNPWGV 263 (315)
T ss_pred cCcceEEeEEE-EEccCceEEEEecCCccC
Confidence 58999999998 444 7889999999994
No 29
>cd02549 Peptidase_C39A A sub-family of peptidase family C39. Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic). The cleavage is mediated by the transporter as part of the secretion process. Bacteriocins are antibiotic proteins secreted by some species of bacteria that inhibit the growth of other bacterial species. The bacteriocin is synthesized as a precursor with an N-terminal leader peptide, and processing involves removal of the leader peptide by cleavage at a Gly-Gly bond, followed by translocation of the mature bacteriocin across the cytoplasmic membrane. Most endopeptidases of family C39 are N-terminal domains in larger proteins (ABC transporters) that serve both functions. The proposed protease active site is conserved in this sub-family of proteins with a single peptidase domain, which are
Probab=88.30 E-value=1.7 Score=32.58 Aligned_cols=45 Identities=20% Similarity=0.299 Sum_probs=31.7
Q ss_pred HHHHHHHcCCEEEEEEecccCccccCceEecCCCCccCCeEEEEEEeccCCCCccEEEEEccC
Q 025695 137 IMAEIYKNGPVEVSFTVYEDFAHYKSGVYKHITGDVMGGHAVKLIGWGTSDDGEDYWILANQW 199 (249)
Q Consensus 137 ik~~L~~~gPV~~~~~~~~~~~~~~~gi~~~~~~~~~~~Hav~IVGy~~~~~~~~~wivkNSW 199 (249)
++++|.++.||++.+... + .....+|.|+|+||+ + ...++|.+.|
T Consensus 70 ~~~~l~~~~Pvi~~~~~~--~------------~~~~~gH~vVv~g~~---~-~~~~~i~DP~ 114 (141)
T cd02549 70 LLRQLAAGHPVIVSVNLG--V------------SITPSGHAMVVIGYD---R-KGNVYVNDPG 114 (141)
T ss_pred HHHHHHCCCeEEEEEecC--c------------ccCCCCeEEEEEEEc---C-CCCEEEECCC
Confidence 788899999999988751 0 112258999999998 2 2235666665
No 30
>PF01640 Peptidase_C10: Peptidase C10 family classification.; InterPro: IPR000200 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C10 (streptopain family, clan CA). Streptopain is a cysteine protease found in Streptococcus pyogenes that shows some structural and functional similarity to papain (family C1) [, ]. The order of the catalytic cysteine/histidine dyad is the same and the surrounding sequences are similar. The two proteins also show similar specificities, both preferring a hydrophobic residue at the P2 site [, ]. Streptopain shows a high degree of sequence similarity to the S. pyogenes exotoxin B, and strong similarity to the prtT gene product of Porphyromonas gingivalis (Bacteroides gingivalis), both of which have been included in the family [].; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 4D8I_A 4D8E_A 4D8B_A 3BBA_B 3BB7_A 2JTC_A 1PVJ_A 1DKI_D 2UZJ_A.
Probab=73.30 E-value=18 Score=29.10 Aligned_cols=53 Identities=26% Similarity=0.458 Sum_probs=32.4
Q ss_pred HHHHHHHHHHcCCEEEEEEecccCccccCceEecCCCCccCCeEEEEEEeccCCCCccEEEEEccCCCCCCCCCeEE
Q 025695 134 PEDIMAEIYKNGPVEVSFTVYEDFAHYKSGVYKHITGDVMGGHAVKLIGWGTSDDGEDYWILANQWNRSWGADGYFK 210 (249)
Q Consensus 134 ~~~ik~~L~~~gPV~~~~~~~~~~~~~~~gi~~~~~~~~~~~Hav~IVGy~~~~~~~~~wivkNSWG~~WG~~Gy~~ 210 (249)
.+.|+.+|.++.||...-..... +||.+|=||+ ...||-+-=.||-. .+||+.
T Consensus 140 ~~~i~~el~~~rPV~~~g~~~~~------------------GHawViDGy~----~~~~~H~NwGW~G~--~nGyy~ 192 (192)
T PF01640_consen 140 MDMIRNELDNGRPVLYSGNSKSG------------------GHAWVIDGYD----SDGYFHCNWGWGGS--SNGYYR 192 (192)
T ss_dssp HHHHHHHHHTT--EEEEEEETTE------------------EEEEEEEEEE----SSSEEEEE-SSTTT--T-EEEE
T ss_pred HHHHHHHHHcCCCEEEEEecCCC------------------CeEEEEcCcc----CCCeEEEeeCccCC--CCCccC
Confidence 36789999999999866443211 7999999997 23455443334332 568864
No 31
>smart00230 CysPc Calpain-like thiol protease family. Calpain-like thiol protease family (peptidase family C2). Calcium activated neutral protease (large subunit).
Probab=61.73 E-value=22 Score=31.07 Aligned_cols=27 Identities=26% Similarity=0.439 Sum_probs=21.4
Q ss_pred CCeEEEEEEeccCCCCcc--EEEEEccCCC
Q 025695 174 GGHAVKLIGWGTSDDGED--YWILANQWNR 201 (249)
Q Consensus 174 ~~Hav~IVGy~~~~~~~~--~wivkNSWG~ 201 (249)
.+||-.|++.. ..++.+ ...|||-||.
T Consensus 227 ~~HaYsVl~v~-~~~~~~~~Ll~lrNPWg~ 255 (318)
T smart00230 227 KGHAYSVTDVR-EVQGRRQELLRLRNPWGQ 255 (318)
T ss_pred cCccEEEEEEE-EEecCCeEEEEEECCCCC
Confidence 58999999988 434445 8999999983
No 32
>KOG4621 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.82 E-value=83 Score=23.68 Aligned_cols=63 Identities=16% Similarity=0.307 Sum_probs=36.5
Q ss_pred CCHHHHHHHHHHcCCEEEEEEecc----cC--ccccCceEecCC------CCccCCeEEEEEEeccCCCCccEEEEEc
Q 025695 132 SDPEDIMAEIYKNGPVEVSFTVYE----DF--AHYKSGVYKHIT------GDVMGGHAVKLIGWGTSDDGEDYWILAN 197 (249)
Q Consensus 132 ~~~~~ik~~L~~~gPV~~~~~~~~----~~--~~~~~gi~~~~~------~~~~~~Hav~IVGy~~~~~~~~~wivkN 197 (249)
..+.+|..+|+++.-|++.+.-.. +| ...+++.+.+.. .+-+.+|-|+|-||+ --++-|.++|
T Consensus 57 VSi~dIqahLaqGnhiAIaLVdq~~Lhcdlceeplk~ccfspnghhcfcrtp~YqGHfiVi~GYd---~a~~c~~~nd 131 (167)
T KOG4621|consen 57 VSIHDIQAHLAQGNHIAIALVDQDKLHCDLCEEPLKSCCFSPNGHHCFCRTPCYQGHFIVICGYD---AARDCFEIND 131 (167)
T ss_pred eeHHHHHHHHhcCCeEEEEEecCCceehHHHHhHHHHhccCCCCccccccCCcccccEEEEeccc---cccCeEEEcC
Confidence 456889999988766655443222 22 112334443321 124569999999999 3344455555
No 33
>PF15528 Toxin_48: Putative toxin 48
Probab=35.33 E-value=34 Score=27.48 Aligned_cols=60 Identities=18% Similarity=0.369 Sum_probs=38.0
Q ss_pred EEEeccCCCCccEEEEEccCCCCC----CCCCeEEEEecCCccccCcceeEeeeCCCcccccccccccccc
Q 025695 180 LIGWGTSDDGEDYWILANQWNRSW----GADGYFKIKRGSNECGIEEDVVAGLPSSKNLVKEITSADMFED 246 (249)
Q Consensus 180 IVGy~~~~~~~~~wivkNSWG~~W----G~~Gy~~is~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (249)
-+||+ +..|+.+++||..| +.-||+.-.+- .....+..+..+-..-+..+=..-.|.+.|
T Consensus 30 ~~G~g-----k~~~~~~~~~~~g~~~~~~~~gy~~~~y~--~~~~tsQ~tG~i~~~~g~f~l~~END~lGd 93 (189)
T PF15528_consen 30 YFGWG-----KSAWEQRKGWGAGFSKRFGQTGYSYSTYM--DNGKTSQRTGSIGFQFGDFSLRYENDFLGD 93 (189)
T ss_pred ccccC-----ccchhhhhhhcccccccCCceeEEEEEEe--ccccceeeeeEEEEecCcEEEEEeeccccc
Confidence 35888 88999999999999 88899866662 123444444444444444444444444444
No 34
>PF00648 Peptidase_C2: Calpain family cysteine protease This is family C2 in the peptidase classification. ; InterPro: IPR001300 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C2 (calpain family, clan CA). A type example is calpain, which is an intracellular protease involved in many important cellular functions that are regulated by calcium []. The protein is a complex of 2 polypeptide chains (light and heavy), with three known forms in mammals [, ]: a highly calcium-sensitive (i.e., micro-molar range) form known as mu-calpain, mu-CANP or calpain I; a form sensitive to calcium in the milli-molar range, known as m-calpain, m-CANP or calpain II; and a third form, known as p94, which is found in skeletal muscle only []. All forms have identical light but different heavy chains. Both mu- and m-calpain are heterodimers containing an identical 28kDa subunit and an 80kDa subunit that shares 55-65% sequence homology between the two proteases [, ]. The crystallographic structure of m-calpain reveals six "domains" in the 80kDa subunit: A 19-amino acid NH2-terminal sequence; Active site domain IIa; Active site domain IIb. Domain 2 shows low levels of sequence similarity to papain; although the catalytic His has not been located by biochemical means, it is likely that calpain and papain are related []. Domain III; An 18-amino acid extended sequence linking domain III to domain IV; Domain IV, which resembles the penta EF-hand family of polypeptides, binds calcium and regulates activity []. />]. Ca2+-binding causes a rearrangement of the protein backbone, the net effect of which is that a Trp side chain, which acts as a wedge between catalytic domains IIa and IIb in the apo state, moves away from the active site cleft allowing for the proper formation of the catalytic triad []. Calpain-like mRNAs have been identified in other organisms including bacteria, but the molecules encoded by these mRNAs have not been isolated, so little is known about their properties. How calpain activity is regulated in these organisms cells is still unclear In metazoans, the activity of calpain is controlled by a single proteinase inhibitor, calpastatin (IPR001259 from INTERPRO). The calpastatin gene can produce eight or more calpastatin polypeptides ranging from 17 to 85 kDa by use of different promoters and alternative splicing events. The physiological significance of these different calpastatins is unclear, although all bind to three different places on the calpain molecule; binding to at least two of the sites is Ca2+ dependent. The calpains ostensibly participate in a variety of cellular processes including remodelling of cytoskeletal/membrane attachments, different signal transduction pathways, and apoptosis. Deregulated calpain activity following loss of Ca2+ homeostasis results in tissue damage in response to events such as myocardial infarcts, stroke, and brain trauma []. Calpains are a family of cytosolic cysteine proteinases (see PDOC00126 from PROSITEDOC). Members of the calpain family are believed to function in various biological processes, including integrin-mediated cell migration, cytoskeletal remodeling, cell differentiation and apoptosis [, ]. The calpain family includes numerous members from C. elegans to mammals and with homologues in yeast and bacteria. The best characterised members are the m- and mu-calpains, both proteins are heterodimer composed of a large catalytic subunit and a small regulatory subunit. The large subunit comprises four domains (dI-dIV) while the small subunit has two domains (dV-dVI). Domain dI is a short region cleaved by autolysis, dII is the catalytic core, dIII is a C2-like domain, dIV consists of five calcium binding EF-hand motifs []. The crystal structure of calpain has been solved [, ]. The catalytic region consists of two distinct structural domains (dIIa and dIIb). dIIa contains a central helix flanked on three faces by a cluster of alpha-helices and is entirely unrelated to the corresponding domain in the typical thiol proteinases. The fold of dIIb is similar to the corresponding domain in other cysteine proteinases and contains two three-stranded anti-parallel beta-sheets. The catalytic triad residues (C,H,N) are located in dIIa and dIIb. The activation of the domain is dependent on the binding of two calcium atoms in two non EF-hand calcium binding sites located in the catalytic core, one close to the Cys active site in dIIa and one at the end of dIIb. Calcium-binding induced conformational changes in the catalytic domain which align the active site [][]. The profile covers the whole catalytic domain.; GO: 0004198 calcium-dependent cysteine-type endopeptidase activity, 0006508 proteolysis, 0005622 intracellular; PDB: 2NQA_A 1KFU_L 1KFX_L 1QXP_B 2R9C_A 1TL9_A 2G8E_A 1KXR_B 2G8J_A 2NQG_A ....
Probab=33.91 E-value=27 Score=30.01 Aligned_cols=29 Identities=28% Similarity=0.579 Sum_probs=0.0
Q ss_pred CCeEEEEEEeccCCCC----ccEEEEEccCCC-CC
Q 025695 174 GGHAVKLIGWGTSDDG----EDYWILANQWNR-SW 203 (249)
Q Consensus 174 ~~Hav~IVGy~~~~~~----~~~wivkNSWG~-~W 203 (249)
.+||-.|++.. ..++ .+.-.|||-||. .|
T Consensus 213 ~~HaY~Vl~~~-~~~~~~~~~~lv~LrNPwg~~~w 246 (298)
T PF00648_consen 213 PGHAYAVLDVR-EVNGNGEGHRLVKLRNPWGSTEW 246 (298)
T ss_dssp TTS-EEEEEEE-EEEETTEEEEEEEEE-TTSS---
T ss_pred cceeEEEEEEE-eeccccceeEEEEEcCCCccccc
No 35
>PF07910 Peptidase_C78: Peptidase family C78; InterPro: IPR012462 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This entry contains UfSP1 and UfSP2, which are cysteine peptidases required for the processing and activation of Ubiquitin fold modifier 1 (Ufm1, IPR005375 from INTERPRO) and for its release from conjugated cellular proteins. UfSP1 and UfSP2 are 217 aa and 461 aa respectively [, ]. The peptidases belong to MEROPS peptidase family C78, clan CA. The UfSP2 family have an N-terminal extension with one or more zinc finger domains of the C2H2 type (IPR007087 from INTERPRO), which have been shown to be involved in protein:protein interaction. UfSP2 is present in most, if not all, multi-cellular organisms including plants, nematodes, flies, and mammals, whereas UfSP1 is not present in plants and nematodes []. ; PDB: 3OQC_B 2Z84_A.
Probab=29.56 E-value=58 Score=26.89 Aligned_cols=23 Identities=26% Similarity=0.527 Sum_probs=15.7
Q ss_pred CCeEEEEEEeccCCCCccEEEEE
Q 025695 174 GGHAVKLIGWGTSDDGEDYWILA 196 (249)
Q Consensus 174 ~~Hav~IVGy~~~~~~~~~wivk 196 (249)
.+|+.+|||+....+++.++||-
T Consensus 155 ~ghS~TIvGie~~~~g~~~LLVl 177 (218)
T PF07910_consen 155 DGHSRTIVGIERNKDGEVNLLVL 177 (218)
T ss_dssp TTEEEEEEEEEE-TT--EEEEEE
T ss_pred cccceEEEEEEECCCCCEEEEEE
Confidence 48999999999666666666653
No 36
>PF09028 Mac-1: Mac 1; InterPro: IPR015117 The bacterial protein Mac 1 adopts an alpha/beta fold, with 14 beta strands and 9 alpha helices. The N-terminal domain is made up predominantly of alpha helices, whereas the C-terminal domain consists predominantly of beta sheets. Mac 1 blocks polymorphonuclear opsonophagocytosis, inhibits the production of reactive oxygen species and contains IgG endopeptidase activity. ; PDB: 1Y08_A 2AVW_C 2AU1_A.
Probab=28.99 E-value=1.1e+02 Score=26.79 Aligned_cols=38 Identities=21% Similarity=0.330 Sum_probs=24.0
Q ss_pred HHHHHHHHHHcCCEEEEEEecccCccccCceEecCCCCccCCeEEEEEEeccCC
Q 025695 134 PEDIMAEIYKNGPVEVSFTVYEDFAHYKSGVYKHITGDVMGGHAVKLIGWGTSD 187 (249)
Q Consensus 134 ~~~ik~~L~~~gPV~~~~~~~~~~~~~~~gi~~~~~~~~~~~Hav~IVGy~~~~ 187 (249)
.+.|+.+|..++.|..+.... ....+|+|++=|.+-|+
T Consensus 233 s~~ik~~L~~g~aigLs~~~~----------------n~~~~HiItlWGae~D~ 270 (333)
T PF09028_consen 233 SEKIKEALDNGKAIGLSYSPG----------------NSSGNHIITLWGAEYDD 270 (333)
T ss_dssp HHHHHHHHHTT-EEEEEE--S----------------STTS-EEEEEEEEEE-T
T ss_pred HHHHHHHHhcCCEEEEEeecC----------------CCCCCcEEEEeeeEEcC
Confidence 378999998888887766331 12248999999976544
No 37
>PF15588 Imm7: Immunity protein 7
Probab=28.42 E-value=1.3e+02 Score=21.98 Aligned_cols=32 Identities=31% Similarity=0.792 Sum_probs=23.3
Q ss_pred EEEEEeccCCC-CccEEEEEccC-----CCCCCCCCeE
Q 025695 178 VKLIGWGTSDD-GEDYWILANQW-----NRSWGADGYF 209 (249)
Q Consensus 178 v~IVGy~~~~~-~~~~wivkNSW-----G~~WG~~Gy~ 209 (249)
|++||+.++++ .+.|.|++.+- -..=|.+||.
T Consensus 18 v~~vG~ADd~~~~~~yiilQR~~~~de~D~~~~~d~~~ 55 (115)
T PF15588_consen 18 VLMVGFADDEDGPKEYIILQRSLEFDEQDEDLGSDGYY 55 (115)
T ss_pred EEEEEEecCCCCCceEEEEEccCCCCCcccccCcCcEE
Confidence 89999997664 45699999863 4455567775
No 38
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=22.63 E-value=2.1e+02 Score=17.99 Aligned_cols=36 Identities=14% Similarity=0.324 Sum_probs=20.0
Q ss_pred EEEEEeccCC-CCccEEEE-EccCCC---CCCCCCeEEEEe
Q 025695 178 VKLIGWGTSD-DGEDYWIL-ANQWNR---SWGADGYFKIKR 213 (249)
Q Consensus 178 v~IVGy~~~~-~~~~~wiv-kNSWG~---~WG~~Gy~~is~ 213 (249)
++++|+.... ....+.++ -|+=|+ .||.+|..++..
T Consensus 14 Ilv~G~~~~~~~~~~~~l~Rln~DGsLDttFg~~G~v~~d~ 54 (55)
T TIGR02608 14 ILVAGYVDNSSGNNDFVLARLNADGSLDTTFGTGGKVTFDL 54 (55)
T ss_pred EEEEEEeecCCCcccEEEEEECCCCCccCCcCCCcEEEEeC
Confidence 5666665222 11223333 365564 888889988753
No 39
>PLN00115 pollen allergen group 3; Provisional
Probab=20.76 E-value=67 Score=23.81 Aligned_cols=24 Identities=21% Similarity=0.545 Sum_probs=17.6
Q ss_pred eEEEEEEeccCCCCccEEE--EEccCCCCCC
Q 025695 176 HAVKLIGWGTSDDGEDYWI--LANQWNRSWG 204 (249)
Q Consensus 176 Hav~IVGy~~~~~~~~~wi--vkNSWG~~WG 204 (249)
++|-|=+-+ ...|+ ++-|||..|-
T Consensus 48 ~~V~Ik~~g-----~~~W~~~M~rswGavW~ 73 (118)
T PLN00115 48 SEVEIKEKG-----AKDWVDDLKESSTNTWT 73 (118)
T ss_pred EEEEEeecC-----CCcccCccccCccceeE
Confidence 555555543 45698 9999999996
No 40
>PF00101 RuBisCO_small: Ribulose bisphosphate carboxylase, small chain; InterPro: IPR000894 RuBisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) is a bifunctional enzyme that catalyses both the carboxylation and oxygenation of ribulose-1,5-bisphosphate (RuBP) [], thus fixing carbon dioxide as the first step of the Calvin cycle. RuBisCO is the major protein in the stroma of chloroplasts, and in higher plants exists as a complex of 8 large and 8 small subunits. The function of the small subunit is unknown []. While the large subunit is coded for by a single gene, the small subunit is coded for by several different genes, which are distributed in a tissue specific manner. They are transcriptionally regulated by light receptor phytochrome [], which results in RuBisCO being more abundant during the day when it is required. The RuBisCo small subunit consists of a central four-stranded beta-sheet, with two helices packed against it [].; PDB: 1BWV_W 1IWA_P 3AXM_X 1WDD_S 3AXK_T 1IR2_K 1RBL_N 1UZH_J 1RSC_P 1UW9_C ....
Probab=20.10 E-value=3.3e+02 Score=19.45 Aligned_cols=61 Identities=13% Similarity=0.186 Sum_probs=34.4
Q ss_pred HHHHHHHHHcCCEEEEEEecccCc-----cccCceEecCC-----------CCccCCeEEEEEEeccCCCCcc--EEEEE
Q 025695 135 EDIMAEIYKNGPVEVSFTVYEDFA-----HYKSGVYKHIT-----------GDVMGGHAVKLIGWGTSDDGED--YWILA 196 (249)
Q Consensus 135 ~~ik~~L~~~gPV~~~~~~~~~~~-----~~~~gi~~~~~-----------~~~~~~Hav~IVGy~~~~~~~~--~wivk 196 (249)
++|...|.++--+++.+.-.+.|. .++-..+...+ -....+|-|-|||+| +..... .|||+
T Consensus 18 ~Qv~~ll~qG~~i~iE~ad~r~~r~~~W~mW~~p~~~~~~~~~Vl~el~~c~~~~p~~yVRlig~D-~~~q~r~~~~iVq 96 (99)
T PF00101_consen 18 KQVRYLLSQGWIIGIEHADPRRFRTSYWQMWKLPMFGCTDPAQVLAELEACLAEHPGEYVRLIGFD-NKRQRRVLEFIVQ 96 (99)
T ss_dssp HHHHHHHHTT-EEEEEEESCGGSTSSS-EEESSEBTTBSSHHHHHHHHHHHHHHSTTSEEEEEEEE-TTTTEEEEEEEEE
T ss_pred HHHHhhhhcCceeeEEecCCCCCCCCEeecCCCCCcCCCCHHHHHHHHHHHHHhCCCceEEEEEEc-CcccEEEEEEEEE
Confidence 677778877777888877644332 22222221111 123569999999999 333222 56664
Done!