BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 025696
         (249 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3RED|A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
           Isozyme-1
 pdb|3RED|B Chain B, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
           Isozyme-1
 pdb|3RED|C Chain C, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
           Isozyme-1
 pdb|3RED|D Chain D, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
           Isozyme-1
 pdb|3RED|E Chain E, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
           Isozyme-1
 pdb|3RED|F Chain F, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
           Isozyme-1
 pdb|3RED|G Chain G, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
           Isozyme-1
 pdb|3RED|H Chain H, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
           Isozyme-1
 pdb|3RED|I Chain I, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
           Isozyme-1
 pdb|3RED|J Chain J, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
           Isozyme-1
 pdb|3RED|K Chain K, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
           Isozyme-1
 pdb|3RED|L Chain L, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
           Isozyme-1
          Length = 521

 Score = 29.6 bits (65), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 12/28 (42%), Positives = 16/28 (57%)

Query: 50  PLSVPPFAFLSQPKQALAATLSSDFVSK 77
           P S+PPFAF   P   L  +  + FV+K
Sbjct: 335 PFSIPPFAFFPNPTYPLPNSTFAHFVNK 362


>pdb|2O26|X Chain X, Structure Of A Class Iii Rtk Signaling Assembly
 pdb|2O26|Y Chain Y, Structure Of A Class Iii Rtk Signaling Assembly
 pdb|2O26|U Chain U, Structure Of A Class Iii Rtk Signaling Assembly
 pdb|2O26|W Chain W, Structure Of A Class Iii Rtk Signaling Assembly
          Length = 290

 Score = 28.5 bits (62), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 4/43 (9%)

Query: 82  TAVYTVSNS----SNEFVLISDPNGAKSIGLLCFRQEDAEAFL 120
           T  YT SNS    S+ +V + DP     +GL  F +ED++A +
Sbjct: 69  TGTYTCSNSNGLTSSIYVFVRDPAKLFLVGLPLFGKEDSDALV 111


>pdb|4E6Z|A Chain A, Tic22 From Plasmodium Falciparum
          Length = 279

 Score = 27.7 bits (60), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 16/62 (25%), Positives = 32/62 (51%), Gaps = 1/62 (1%)

Query: 148 KVEGIAFRFLPDPAQIRNALELKAADVRTGFDGVPVFQSELLVVKKKNKRYCPVYFQKED 207
           K + I ++ +    Q++NAL   +   ++     PVF +E L ++K      P++F  ED
Sbjct: 160 KKQNIYWKLISSKRQLQNALYYLSFTKKSEL-XYPVFYAENLYIQKDGSNIIPLFFDLED 218

Query: 208 IE 209
           ++
Sbjct: 219 LK 220


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.134    0.373 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,117,906
Number of Sequences: 62578
Number of extensions: 214115
Number of successful extensions: 527
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 525
Number of HSP's gapped (non-prelim): 6
length of query: 249
length of database: 14,973,337
effective HSP length: 96
effective length of query: 153
effective length of database: 8,965,849
effective search space: 1371774897
effective search space used: 1371774897
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)