BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025697
(249 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1A5J|A Chain A, Chicken B-Myb Dna Binding Domain, Repeat 2 And Repeat3,
Nmr, 32 Structures
Length = 110
Score = 119 bits (299), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 52/104 (50%), Positives = 72/104 (69%)
Query: 2 CTRGHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLDPRINRSPFTE 61
+G W ED+K+ ELV++YG W IA+ L+GR GK CR RW N L+P + +S +TE
Sbjct: 5 LVKGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKGRLGKQCRERWHNHLNPEVKKSSWTE 64
Query: 62 EEEERLLASHRIHGNRWAVIARLFPGRTDNAVKNHWHVIMARRC 105
EE+ + +H++ GNRWA IA+L PGRTDNAVKNHW+ + R+
Sbjct: 65 EEDRIIFEAHKVLGNRWAEIAKLLPGRTDNAVKNHWNSTIKRKV 108
>pdb|1MSE|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb
Dna- Binding Domain With Cooperative Recognition Helices
pdb|1MSF|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb
Dna- Binding Domain With Cooperative Recognition Helices
Length = 105
Score = 119 bits (298), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 51/105 (48%), Positives = 74/105 (70%)
Query: 1 MCTRGHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLDPRINRSPFT 60
M +G W ED+++ +LV++YGP W+ IA+ L+GR GK CR RW N L+P + ++ +T
Sbjct: 1 MLIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWT 60
Query: 61 EEEEERLLASHRIHGNRWAVIARLFPGRTDNAVKNHWHVIMARRC 105
EEE+ + +H+ GNRWA IA+L PGRTDNA+KNHW+ M R+
Sbjct: 61 EEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 105
>pdb|1H88|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex1
pdb|1H89|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex2
Length = 159
Score = 117 bits (292), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 50/102 (49%), Positives = 73/102 (71%)
Query: 4 RGHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLDPRINRSPFTEEE 63
+G W ED+++ +LV++YGP W+ IA+ L+GR GK CR RW N L+P + ++ +TEEE
Sbjct: 58 KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEE 117
Query: 64 EERLLASHRIHGNRWAVIARLFPGRTDNAVKNHWHVIMARRC 105
+ + +H+ GNRWA IA+L PGRTDNA+KNHW+ M R+
Sbjct: 118 DRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 159
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 54 INRSPFTEEEEERLLASHRIHG-NRWAVIARLFPGRTDNAVKNHWHVIM 101
+ ++ +T EE+E+L +G + W VIA P RTD ++ W ++
Sbjct: 4 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVL 52
>pdb|1GV2|A Chain A, Crystal Structure Of C-Myb R2r3
Length = 105
Score = 116 bits (291), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 50/104 (48%), Positives = 73/104 (70%)
Query: 2 CTRGHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLDPRINRSPFTE 61
+G W ED+++ +LV++YGP W+ IA+ L+GR GK CR RW N L+P + ++ +TE
Sbjct: 2 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTE 61
Query: 62 EEEERLLASHRIHGNRWAVIARLFPGRTDNAVKNHWHVIMARRC 105
EE+ + +H+ GNRWA IA+L PGRTDNA+KNHW+ M R+
Sbjct: 62 EEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 105
>pdb|1H8A|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex3
Length = 128
Score = 114 bits (286), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 72/102 (70%)
Query: 4 RGHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLDPRINRSPFTEEE 63
+G W ED+++ E V++YGP W+ IA+ L+GR GK CR RW N L+P + ++ +TEEE
Sbjct: 27 KGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEE 86
Query: 64 EERLLASHRIHGNRWAVIARLFPGRTDNAVKNHWHVIMARRC 105
+ + +H+ GNRWA IA+L PGRTDNAVKNHW+ M R+
Sbjct: 87 DRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRKV 128
>pdb|3ZQC|A Chain A, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|D Chain D, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|G Chain G, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|J Chain J, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
Length = 131
Score = 100 bits (248), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 46/102 (45%), Positives = 67/102 (65%)
Query: 4 RGHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLDPRINRSPFTEEE 63
+G + AED+ +RE V+ GP NW I L RS K CR RWFN LDP + + +T EE
Sbjct: 2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHLDPAVVKHAWTPEE 61
Query: 64 EERLLASHRIHGNRWAVIARLFPGRTDNAVKNHWHVIMARRC 105
+E + ++ G++W+VIA+L PGRTDNA+KN W+ +++R
Sbjct: 62 DETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSSISKRI 103
>pdb|3OSF|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-2f-13 Dna
pdb|3OSF|D Chain D, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-2f-13 Dna
pdb|3OSG|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-1-12 Dna
pdb|3OSG|D Chain D, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-1-12 Dna
Length = 126
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 56/92 (60%), Gaps = 1/92 (1%)
Query: 9 PAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLDPRINRSPFTEEEEERLL 68
P EDE L+ V ++G +W IA R+ + CR RW N L P I+ +P+T EE+ L+
Sbjct: 16 PEEDEMLKRAVAQHG-SDWKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTAEEDALLV 74
Query: 69 ASHRIHGNRWAVIARLFPGRTDNAVKNHWHVI 100
+ +G +WA+IA+ FPGRTD +KN W I
Sbjct: 75 QKIQEYGRQWAIIAKFFPGRTDIHIKNRWVTI 106
Score = 33.9 bits (76), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 12/54 (22%)
Query: 59 FTEEEEERLLASHRIHGNRWAVIARLFPGRTDNAVKNHWHVIMARRCRERSRLY 112
FT EE+E L + HG+ W +IA FP R AR+CR+R + Y
Sbjct: 14 FTPEEDEMLKRAVAQHGSDWKMIAATFPNRN------------ARQCRDRWKNY 55
>pdb|2K9N|A Chain A, Solution Nmr Structure Of The R2r3 Dna Binding Domain Of
Myb1 Protein From Protozoan Parasite Trichomonas
Vaginalis
pdb|2KDZ|A Chain A, Structure Of The R2r3 Dna Binding Domain Of Myb1 Protein
From Protozoan Parasite Trichomonas Vaginalis In Complex
With Mre-1MRE-2r Dna
Length = 107
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 56/96 (58%)
Query: 11 EDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLDPRINRSPFTEEEEERLLAS 70
ED KL++LV RYG +W I++ + R+ + CR RW N ++P + P++ EE+ L
Sbjct: 8 EDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQK 67
Query: 71 HRIHGNRWAVIARLFPGRTDNAVKNHWHVIMARRCR 106
+ +G +W I++ R+DN ++N W +I R +
Sbjct: 68 YAEYGPKWNKISKFLKNRSDNNIRNRWMMIARHRAK 103
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 7 WRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWF 47
W P ED L + YGP WN I++ L+ RS + R RW
Sbjct: 56 WSPEEDMLLDQKYAEYGPK-WNKISKFLKNRSDNNIRNRWM 95
>pdb|1IDY|A Chain A, Structure Of Myb Transforming Protein, Nmr, Minimized
Average Structure
pdb|1IDZ|A Chain A, Structure Of Myb Transforming Protein, Nmr, 20 Structures
Length = 54
Score = 64.3 bits (155), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 27/52 (51%), Positives = 38/52 (73%)
Query: 54 INRSPFTEEEEERLLASHRIHGNRWAVIARLFPGRTDNAVKNHWHVIMARRC 105
+ ++ +TEEE+ L +H+ GNRWA IA+L PGRTDNA+KNHW+ M R+
Sbjct: 3 VKKTSWTEEEDRILYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 54
>pdb|1MBJ|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3
pdb|1MBK|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3
Length = 53
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 38/52 (73%)
Query: 54 INRSPFTEEEEERLLASHRIHGNRWAVIARLFPGRTDNAVKNHWHVIMARRC 105
+ ++ +TEEE+ + +H+ GNRWA IA+L PGRTDNA+KNHW+ M R+
Sbjct: 1 VKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 52
>pdb|1MBG|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2
pdb|1MBH|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2
Length = 53
Score = 59.7 bits (143), Expect = 2e-09, Method: Composition-based stats.
Identities = 25/49 (51%), Positives = 35/49 (71%)
Query: 4 RGHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLDP 52
+G W ED+++ ELV++YGP W+ IA+ L+GR GK CR RW N L+P
Sbjct: 3 KGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP 51
Score = 33.5 bits (75), Expect = 0.12, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 56 RSPFTEEEEERLLASHRIHG-NRWAVIARLFPGRTDNAVKNHWH 98
+ P+T+EE++R++ + +G RW+VIA+ GR + WH
Sbjct: 3 KGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWH 46
>pdb|1GVD|A Chain A, Crystal Structure Of C-Myb R2 V103l Mutant
Length = 52
Score = 59.3 bits (142), Expect = 2e-09, Method: Composition-based stats.
Identities = 25/49 (51%), Positives = 35/49 (71%)
Query: 4 RGHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLDP 52
+G W ED++L +LV++YGP W+ IA+ L+GR GK CR RW N L+P
Sbjct: 3 KGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP 51
Score = 34.7 bits (78), Expect = 0.047, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 56 RSPFTEEEEERLLASHRIHG-NRWAVIARLFPGRTDNAVKNHWH 98
+ P+T+EE++RL+ + +G RW+VIA+ GR + WH
Sbjct: 3 KGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWH 46
>pdb|1GV5|A Chain A, Crystal Structure Of C-Myb R2
Length = 52
Score = 58.5 bits (140), Expect = 4e-09, Method: Composition-based stats.
Identities = 24/49 (48%), Positives = 35/49 (71%)
Query: 4 RGHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLDP 52
+G W ED+++ +LV++YGP W+ IA+ L+GR GK CR RW N L+P
Sbjct: 3 KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP 51
Score = 33.5 bits (75), Expect = 0.10, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 56 RSPFTEEEEERLLASHRIHG-NRWAVIARLFPGRTDNAVKNHWH 98
+ P+T+EE++R++ + +G RW+VIA+ GR + WH
Sbjct: 3 KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWH 46
>pdb|2DIM|A Chain A, Solution Structure Of The Myb_dna-Binding Domain Of
Human Cell Division Cycle 5-Like Protein
Length = 70
Score = 51.2 bits (121), Expect = 5e-07, Method: Composition-based stats.
Identities = 22/54 (40%), Positives = 33/54 (61%)
Query: 7 WRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLDPRINRSPFT 60
WR EDE L+ V +YG + W+ IA L +S K C+ RW+ LDP I ++ ++
Sbjct: 12 WRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWS 65
>pdb|1MBE|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 1
pdb|1MBF|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 1
Length = 53
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 27/46 (58%)
Query: 7 WRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLDP 52
W EDEKL++LVE+ G +W IA L R+ C+ RW L+P
Sbjct: 6 WTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP 51
Score = 30.8 bits (68), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 54 INRSPFTEEEEERLLASHRIHG-NRWAVIARLFPGRTDNAVKNHWHVIM 101
+ ++ +T EE+E+L +G + W VIA P RTD ++ W ++
Sbjct: 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVL 49
>pdb|1GUU|A Chain A, Crystal Structure Of C-Myb R1
Length = 52
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 27/46 (58%)
Query: 7 WRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLDP 52
W EDEKL++LVE+ G +W IA L R+ C+ RW L+P
Sbjct: 6 WTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP 51
Score = 30.8 bits (68), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 54 INRSPFTEEEEERLLASHRIHG-NRWAVIARLFPGRTDNAVKNHWHVIM 101
+ ++ +T EE+E+L +G + W VIA P RTD ++ W ++
Sbjct: 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVL 49
>pdb|2D9A|A Chain A, Solution Structure Of Rsgi Ruh-050, A Myb Dna-Binding
Domain In Mouse Cdna
Length = 60
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 24/44 (54%)
Query: 7 WRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQL 50
W EDE+LR LV ++G +W +A R+ + C+ RW L
Sbjct: 11 WTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVL 54
Score = 32.3 bits (72), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 14/68 (20%)
Query: 36 GRSGKSCRLRWFNQLDPRINRSPFTEEEEERLLASHRIHGNR-WAVIARLFPGRTDNAVK 94
G SG S +++W T EE+E+L A R G + W +A FP RTD +
Sbjct: 1 GSSGSSGKVKW-------------THEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQ 47
Query: 95 NHWHVIMA 102
W +++
Sbjct: 48 YRWLRVLS 55
>pdb|2CJJ|A Chain A, Crystal Structure Of The Myb Domain Of The Rad
Transcription Factor From Antirrhinum Majus
Length = 93
Score = 30.4 bits (67), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 65 ERLLASH-RIHGNRWAVIARLFPGRTDNAVKNHWHVIM 101
ER LA + + +RWA +AR GRT VK H+ +++
Sbjct: 20 ERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILV 57
>pdb|1SDO|A Chain A, Crystal Structure Of Restriction Endonuclease Bstyi
pdb|1VRR|A Chain A, Crystal Structure Of The Restriction Endonuclease Bstyi
Complex With Dna
pdb|1VRR|B Chain B, Crystal Structure Of The Restriction Endonuclease Bstyi
Complex With Dna
pdb|2P0J|A Chain A, Structure Of Restriction Endonuclease Bstyi Bound To
Non-Cognate Dna
pdb|2P0J|B Chain B, Structure Of Restriction Endonuclease Bstyi Bound To
Non-Cognate Dna
Length = 203
Score = 28.5 bits (62), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 22 YGPHNWN-AIAEKLQGRSGKSCRLRWFNQLDPRINRSPFTEEEEER 66
Y P N A EKL+ + K R ++ DP++ R + E EE+
Sbjct: 55 YSPVALNEAFKEKLEAKGWKESRTNYYVTADPKLIRETLSLEPEEQ 100
>pdb|1IGN|A Chain A, Dna-Binding Domain Of Rap1 In Complex With Telomeric Dna
Site
pdb|1IGN|B Chain B, Dna-Binding Domain Of Rap1 In Complex With Telomeric Dna
Site
Length = 246
Score = 28.1 bits (61), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 32/60 (53%), Gaps = 6/60 (10%)
Query: 52 PRINRSPFTEEEEERLLASHRIHGNR------WAVIARLFPGRTDNAVKNHWHVIMARRC 105
P N++ FT+EE+E +L R + R + I+ P T N++++ + V +++R
Sbjct: 4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRL 63
>pdb|2M2E|A Chain A, Solution Nmr Structure Of The Sant Domain Of Human
Dnajc2, Northeast Structural Genomics Consortium Target
Hr8254a
Length = 73
Score = 28.1 bits (61), Expect = 5.3, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Query: 7 WRPAEDEKLRELVERY---GPHNWNAIAEKLQGRSGKSCRLRW 46
W E + L + ++ Y P W IAE + GR+ K C R+
Sbjct: 6 WTTEEQKLLEQALKTYPVNTPERWKKIAEAVPGRTKKDCMKRY 48
>pdb|3GDB|A Chain A, Crystal Structure Of Spr0440 Glycoside Hydrolase Domain,
Endo-D From Streptococcus Pneumoniae R6
Length = 937
Score = 27.7 bits (60), Expect = 7.1, Method: Composition-based stats.
Identities = 19/82 (23%), Positives = 35/82 (42%), Gaps = 2/82 (2%)
Query: 58 PFTEEEEERLLASHRIHGNRWAVIARLFPGRTDNAVKNHWHVIMARRCRERSRLYAKRAA 117
P + E+ L I N W + + PG ++ N V++A R L ++A+
Sbjct: 148 PDVPKNTEKTLKPKEIKFNSWEELLKWEPGAREDDAINRGSVVLAS--RRTGHLVNEKAS 205
Query: 118 QTFLNDQKSSSSSRPNHHAQTG 139
+ S+++S+ HA G
Sbjct: 206 KEAKVQALSNTNSKAKDHASVG 227
>pdb|2LLK|A Chain A, Solution Nmr Structure Of The N-Terminal Myb-Like 1 Domain
Of The Human Cyclin-D-Binding Transcription Factor 1
(Hdmp1), Northeast Structural Genomics Consortium (Nesg)
Target Id Hr8011a
Length = 73
Score = 27.3 bits (59), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 59 FTEEEEERLLASHRIHGNRWAVIARLFPGRTDNAVKNHWHVI 100
+T EE E+L HGN WA I GR+ ++VK+ ++
Sbjct: 26 YTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRLM 66
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.131 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,630,564
Number of Sequences: 62578
Number of extensions: 302365
Number of successful extensions: 706
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 659
Number of HSP's gapped (non-prelim): 47
length of query: 249
length of database: 14,973,337
effective HSP length: 96
effective length of query: 153
effective length of database: 8,965,849
effective search space: 1371774897
effective search space used: 1371774897
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)