Query 025697
Match_columns 249
No_of_seqs 197 out of 1415
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 15:38:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025697.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025697hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gv2_A C-MYB, MYB proto-oncoge 100.0 8.2E-35 2.8E-39 226.5 11.3 103 2-104 2-104 (105)
2 2k9n_A MYB24; R2R3 domain, DNA 100.0 2E-34 6.9E-39 225.6 11.9 103 4-106 1-103 (107)
3 3osg_A MYB21; transcription-DN 100.0 2.1E-33 7.2E-38 225.9 12.4 102 2-104 9-110 (126)
4 3zqc_A MYB3; transcription-DNA 100.0 5.7E-34 1.9E-38 230.5 9.1 104 4-107 2-105 (131)
5 1h8a_C AMV V-MYB, MYB transfor 100.0 2.2E-33 7.5E-38 225.9 10.4 103 2-104 25-127 (128)
6 1h89_C C-MYB, MYB proto-oncoge 100.0 3.3E-31 1.1E-35 220.4 10.0 103 2-104 56-158 (159)
7 1h89_C C-MYB, MYB proto-oncoge 100.0 2.5E-30 8.5E-35 215.1 5.5 103 2-104 4-107 (159)
8 2dim_A Cell division cycle 5-l 99.9 1.7E-22 5.8E-27 146.6 4.1 63 2-64 7-69 (70)
9 1h8a_C AMV V-MYB, MYB transfor 99.8 3.5E-21 1.2E-25 154.6 4.8 75 30-104 1-76 (128)
10 1ign_A Protein (RAP1); RAP1,ye 99.8 7E-19 2.4E-23 154.2 8.7 103 2-104 6-200 (246)
11 2juh_A Telomere binding protei 99.7 1E-18 3.4E-23 139.5 4.9 79 2-80 15-103 (121)
12 1gvd_A MYB proto-oncogene prot 99.7 2.3E-18 7.8E-23 117.7 5.3 52 2-53 1-52 (52)
13 1guu_A C-MYB, MYB proto-oncoge 99.7 2.5E-18 8.5E-23 117.5 4.6 52 2-53 1-52 (52)
14 2d9a_A B-MYB, MYB-related prot 99.7 5.5E-18 1.9E-22 119.1 5.6 54 2-55 6-59 (60)
15 2roh_A RTBP1, telomere binding 99.7 1.1E-17 3.8E-22 133.6 7.2 76 2-77 29-114 (122)
16 2llk_A Cyclin-D-binding MYB-li 99.7 9.7E-18 3.3E-22 122.9 5.4 58 42-100 9-66 (73)
17 1ity_A TRF1; helix-turn-helix, 99.7 1.6E-17 5.6E-22 119.9 5.4 59 2-60 8-68 (69)
18 3sjm_A Telomeric repeat-bindin 99.7 2E-17 6.8E-22 118.3 4.5 54 2-55 9-64 (64)
19 2din_A Cell division cycle 5-l 99.7 1.2E-16 4E-21 114.4 6.6 58 49-107 2-59 (66)
20 2cu7_A KIAA1915 protein; nucle 99.6 2.2E-16 7.6E-21 114.9 6.9 58 50-107 3-60 (72)
21 1w0t_A Telomeric repeat bindin 99.6 1E-16 3.4E-21 110.1 4.7 49 3-51 1-51 (53)
22 1x41_A Transcriptional adaptor 99.6 1.2E-16 4.1E-21 112.5 5.3 52 2-53 6-57 (60)
23 2elk_A SPCC24B10.08C protein; 99.6 4.4E-16 1.5E-20 108.9 5.1 49 2-50 7-56 (58)
24 2d9a_A B-MYB, MYB-related prot 99.6 4.6E-16 1.6E-20 109.2 4.5 54 51-104 3-57 (60)
25 1guu_A C-MYB, MYB proto-oncoge 99.6 2E-15 7E-20 102.9 6.8 49 54-102 1-50 (52)
26 1w0t_A Telomeric repeat bindin 99.6 2.4E-15 8.3E-20 103.1 6.2 49 55-103 1-52 (53)
27 2din_A Cell division cycle 5-l 99.6 3.9E-16 1.3E-20 111.7 1.7 54 2-57 7-60 (66)
28 1ity_A TRF1; helix-turn-helix, 99.6 4.7E-15 1.6E-19 107.0 6.6 57 50-106 4-63 (69)
29 1gvd_A MYB proto-oncogene prot 99.6 4.1E-15 1.4E-19 101.4 5.9 49 54-102 1-50 (52)
30 1x41_A Transcriptional adaptor 99.6 4.9E-15 1.7E-19 104.2 6.1 52 51-102 3-55 (60)
31 2yum_A ZZZ3 protein, zinc fing 99.5 1.4E-15 4.6E-20 111.4 3.1 56 2-57 6-66 (75)
32 2dim_A Cell division cycle 5-l 99.5 2.9E-15 1E-19 108.3 4.3 57 51-107 4-61 (70)
33 2cu7_A KIAA1915 protein; nucle 99.5 2.3E-15 7.9E-20 109.5 3.3 54 2-56 7-60 (72)
34 3sjm_A Telomeric repeat-bindin 99.5 1.7E-14 5.8E-19 103.0 6.5 51 54-104 9-62 (64)
35 2ckx_A NGTRF1, telomere bindin 99.5 2.2E-14 7.4E-19 107.5 7.0 69 5-73 1-79 (83)
36 2yum_A ZZZ3 protein, zinc fing 99.5 1.1E-14 3.9E-19 106.4 5.2 56 51-106 3-64 (75)
37 2elk_A SPCC24B10.08C protein; 99.5 2.9E-14 9.9E-19 99.7 6.4 49 52-100 5-55 (58)
38 3zqc_A MYB3; transcription-DNA 99.5 2.8E-15 9.5E-20 120.7 -0.6 79 2-85 52-130 (131)
39 2ltp_A Nuclear receptor corepr 99.2 3.5E-15 1.2E-19 113.0 0.0 56 49-104 9-64 (89)
40 2aje_A Telomere repeat-binding 99.5 3.4E-14 1.2E-18 110.8 5.4 74 2-75 11-94 (105)
41 2llk_A Cyclin-D-binding MYB-li 99.5 7.5E-14 2.6E-18 102.1 6.0 47 2-50 21-67 (73)
42 2yus_A SWI/SNF-related matrix- 99.4 1.8E-13 6.2E-18 101.5 5.0 46 3-49 17-62 (79)
43 2cqr_A RSGI RUH-043, DNAJ homo 99.4 4.5E-13 1.5E-17 98.0 6.7 51 52-102 14-68 (73)
44 2cqr_A RSGI RUH-043, DNAJ homo 99.4 1.4E-13 4.8E-18 100.7 2.2 51 2-52 16-69 (73)
45 2yus_A SWI/SNF-related matrix- 99.3 5.1E-13 1.8E-17 99.1 4.6 48 53-100 15-62 (79)
46 2ltp_A Nuclear receptor corepr 99.0 1E-13 3.5E-18 104.9 0.0 50 2-52 14-63 (89)
47 1gv2_A C-MYB, MYB proto-oncoge 99.3 8.8E-13 3E-17 101.8 4.6 51 2-53 54-104 (105)
48 3osg_A MYB21; transcription-DN 99.3 1.2E-12 4.2E-17 104.5 5.4 58 51-108 6-63 (126)
49 2ckx_A NGTRF1, telomere bindin 99.3 7.3E-12 2.5E-16 93.7 7.0 48 57-104 1-53 (83)
50 1x58_A Hypothetical protein 49 99.3 7.7E-12 2.6E-16 88.3 5.9 50 54-103 6-58 (62)
51 2k9n_A MYB24; R2R3 domain, DNA 99.2 5.4E-12 1.9E-16 98.0 4.7 52 56-107 1-53 (107)
52 2juh_A Telomere binding protei 99.2 1.5E-11 5.1E-16 98.0 7.0 54 50-103 11-69 (121)
53 2aje_A Telomere repeat-binding 99.2 1.8E-11 6.1E-16 95.4 7.1 52 52-103 9-65 (105)
54 2cjj_A Radialis; plant develop 99.2 3E-11 1E-15 92.2 7.6 50 55-104 7-60 (93)
55 1ign_A Protein (RAP1); RAP1,ye 99.2 6.5E-12 2.2E-16 110.2 4.3 55 52-106 4-64 (246)
56 2cjj_A Radialis; plant develop 99.2 9.4E-12 3.2E-16 95.0 3.5 48 3-50 7-57 (93)
57 2roh_A RTBP1, telomere binding 99.1 7.4E-11 2.5E-15 94.1 7.1 53 52-104 27-84 (122)
58 2eqr_A N-COR1, N-COR, nuclear 99.0 4.7E-10 1.6E-14 78.9 6.4 47 55-101 11-57 (61)
59 1x58_A Hypothetical protein 49 99.0 2.2E-10 7.4E-15 80.9 3.6 48 3-51 7-57 (62)
60 3hm5_A DNA methyltransferase 1 99.0 1E-09 3.6E-14 83.5 7.2 65 40-108 18-87 (93)
61 2eqr_A N-COR1, N-COR, nuclear 98.9 6.4E-10 2.2E-14 78.2 4.7 47 3-50 11-57 (61)
62 2iw5_B Protein corest, REST co 98.8 3.9E-09 1.3E-13 91.9 6.4 77 26-103 104-180 (235)
63 2cqq_A RSGI RUH-037, DNAJ homo 98.8 6.9E-09 2.4E-13 75.5 6.4 50 53-103 5-58 (72)
64 2cqq_A RSGI RUH-037, DNAJ homo 98.8 2.8E-09 9.6E-14 77.5 3.9 49 2-51 6-57 (72)
65 2xag_B REST corepressor 1; ami 98.7 7.6E-09 2.6E-13 99.0 4.3 44 57-100 381-424 (482)
66 1wgx_A KIAA1903 protein; MYB D 98.7 1.4E-08 4.7E-13 74.0 4.6 51 2-52 6-59 (73)
67 2iw5_B Protein corest, REST co 98.6 4.8E-08 1.7E-12 85.0 5.4 48 3-51 132-179 (235)
68 1wgx_A KIAA1903 protein; MYB D 98.5 8.6E-08 3E-12 69.8 5.4 46 55-100 7-56 (73)
69 1fex_A TRF2-interacting telome 98.5 4.7E-08 1.6E-12 68.4 3.0 48 4-51 2-58 (59)
70 1ofc_X ISWI protein; nuclear p 98.4 1.4E-06 5E-11 79.0 10.9 105 5-109 111-281 (304)
71 1fex_A TRF2-interacting telome 98.3 9.3E-07 3.2E-11 61.7 5.0 46 56-101 2-57 (59)
72 2yqk_A Arginine-glutamic acid 98.3 1.9E-06 6.6E-11 60.7 6.7 49 52-100 5-54 (63)
73 4eef_G F-HB80.4, designed hema 98.2 2.9E-07 9.9E-12 66.8 1.1 44 4-47 20-66 (74)
74 4iej_A DNA methyltransferase 1 98.1 1E-05 3.5E-10 61.4 7.1 61 45-109 23-88 (93)
75 1ug2_A 2610100B20RIK gene prod 98.0 7.5E-06 2.6E-10 61.6 5.7 46 58-103 35-83 (95)
76 4eef_G F-HB80.4, designed hema 98.0 9.4E-07 3.2E-11 64.2 0.7 43 56-98 20-66 (74)
77 2yqk_A Arginine-glutamic acid 98.0 7.1E-06 2.4E-10 57.8 4.5 46 3-49 8-54 (63)
78 2crg_A Metastasis associated p 97.8 3.4E-05 1.2E-09 55.4 6.3 44 56-99 8-52 (70)
79 2lr8_A CAsp8-associated protei 97.1 2.3E-06 7.7E-11 61.2 0.0 45 58-103 16-63 (70)
80 2xag_B REST corepressor 1; ami 97.8 1.9E-05 6.4E-10 75.7 5.3 45 4-49 380-424 (482)
81 4a69_C Nuclear receptor corepr 97.8 4.7E-05 1.6E-09 57.8 6.5 45 56-100 43-87 (94)
82 2crg_A Metastasis associated p 97.7 2.4E-05 8.3E-10 56.2 4.1 44 4-48 8-52 (70)
83 4a69_C Nuclear receptor corepr 97.7 2.8E-05 9.5E-10 59.0 4.2 44 4-48 43-86 (94)
84 3hm5_A DNA methyltransferase 1 97.7 2.8E-05 9.4E-10 59.0 4.0 47 3-50 29-80 (93)
85 4b4c_A Chromodomain-helicase-D 97.5 0.0002 6.8E-09 60.9 6.6 101 4-104 7-197 (211)
86 2y9y_A Imitation switch protei 97.2 0.0013 4.3E-08 61.2 9.7 102 5-107 124-295 (374)
87 1ug2_A 2610100B20RIK gene prod 97.2 0.00026 8.8E-09 53.3 3.8 45 6-50 35-81 (95)
88 2ebi_A DNA binding protein GT- 97.2 0.00015 5.3E-09 53.5 2.3 48 3-50 3-63 (86)
89 2lr8_A CAsp8-associated protei 96.2 6.2E-05 2.1E-09 53.7 0.0 45 6-51 16-62 (70)
90 2ebi_A DNA binding protein GT- 97.1 0.0004 1.4E-08 51.2 4.3 51 56-106 4-68 (86)
91 4iej_A DNA methyltransferase 1 95.8 0.0062 2.1E-07 46.0 3.5 47 3-50 29-80 (93)
92 1ofc_X ISWI protein; nuclear p 94.5 0.066 2.3E-06 48.4 6.7 49 56-104 110-159 (304)
93 1irz_A ARR10-B; helix-turn-hel 94.1 0.089 3E-06 37.0 5.1 48 2-49 5-56 (64)
94 1irz_A ARR10-B; helix-turn-hel 93.9 0.3 1E-05 34.2 7.6 47 54-100 5-56 (64)
95 2xb0_X Chromo domain-containin 93.0 0.066 2.2E-06 47.7 3.8 27 6-32 170-196 (270)
96 4b4c_A Chromodomain-helicase-D 92.8 0.19 6.4E-06 42.2 6.2 52 54-105 5-61 (211)
97 2y9y_A Imitation switch protei 84.4 0.96 3.3E-05 41.9 4.6 45 3-47 227-286 (374)
98 2xb0_X Chromo domain-containin 82.6 3.5 0.00012 36.5 7.4 51 56-106 3-58 (270)
99 2li6_A SWI/SNF chromatin-remod 62.8 6.8 0.00023 29.9 3.7 39 66-104 53-99 (116)
100 2o8x_A Probable RNA polymerase 59.3 18 0.0006 23.7 5.0 41 62-103 18-58 (70)
101 2lm1_A Lysine-specific demethy 57.6 18 0.0006 26.9 5.2 39 65-103 47-97 (107)
102 2li6_A SWI/SNF chromatin-remod 56.4 6.2 0.00021 30.1 2.4 39 14-52 53-98 (116)
103 1ku3_A Sigma factor SIGA; heli 56.3 21 0.00071 24.0 5.0 42 62-104 13-58 (73)
104 1kkx_A Transcription regulator 53.5 11 0.00038 29.2 3.5 39 66-104 52-98 (123)
105 2jrz_A Histone demethylase jar 52.6 15 0.00051 28.0 4.1 39 65-103 43-93 (117)
106 2eqy_A RBP2 like, jumonji, at 49.3 22 0.00075 27.3 4.6 37 66-102 46-94 (122)
107 2cxy_A BAF250B subunit, HBAF25 49.1 22 0.00075 27.3 4.6 38 65-102 54-103 (125)
108 2p7v_B Sigma-70, RNA polymeras 49.1 23 0.00078 23.4 4.2 41 63-104 9-53 (68)
109 2jvw_A Uncharacterized protein 45.0 16 0.00056 26.8 3.0 45 12-68 18-69 (88)
110 3hug_A RNA polymerase sigma fa 44.8 43 0.0015 23.4 5.4 42 62-104 40-81 (92)
111 1x3u_A Transcriptional regulat 42.8 57 0.0019 21.7 5.6 42 60-104 18-59 (79)
112 3i4p_A Transcriptional regulat 41.8 14 0.00048 29.1 2.5 41 10-51 3-43 (162)
113 2jrz_A Histone demethylase jar 41.0 24 0.00081 26.8 3.6 39 14-52 44-93 (117)
114 1k78_A Paired box protein PAX5 40.4 1.1E+02 0.0039 22.9 9.8 79 4-85 30-118 (149)
115 2kk0_A AT-rich interactive dom 39.5 35 0.0012 27.0 4.5 40 65-104 67-119 (145)
116 1c20_A DEAD ringer protein; DN 39.1 34 0.0012 26.3 4.3 41 65-105 55-108 (128)
117 2rq5_A Protein jumonji; develo 39.1 19 0.00065 27.8 2.8 55 14-71 46-112 (121)
118 3c57_A Two component transcrip 39.0 55 0.0019 23.2 5.2 44 58-104 27-70 (95)
119 2jxj_A Histone demethylase jar 38.7 24 0.00081 25.6 3.1 39 14-52 40-89 (96)
120 1u78_A TC3 transposase, transp 38.2 1.1E+02 0.0039 22.2 11.5 93 1-97 1-100 (141)
121 3ulq_B Transcriptional regulat 37.9 73 0.0025 22.6 5.7 45 57-104 28-72 (90)
122 1ig6_A MRF-2, modulator recogn 37.8 20 0.0007 26.6 2.7 39 14-52 37-87 (107)
123 1fse_A GERE; helix-turn-helix 37.1 59 0.002 21.2 4.8 45 57-104 10-54 (74)
124 2jpc_A SSRB; DNA binding prote 36.4 67 0.0023 20.2 4.9 39 64-104 3-41 (61)
125 1je8_A Nitrate/nitrite respons 36.3 58 0.002 22.4 4.8 44 58-104 21-64 (82)
126 3cz6_A DNA-binding protein RAP 36.1 1.1E+02 0.0038 25.0 7.0 28 41-68 98-126 (168)
127 3i4p_A Transcriptional regulat 34.7 34 0.0012 26.8 3.7 43 62-105 3-46 (162)
128 2cxy_A BAF250B subunit, HBAF25 34.2 30 0.001 26.5 3.2 38 14-51 55-103 (125)
129 1or7_A Sigma-24, RNA polymeras 33.2 93 0.0032 24.0 6.2 29 74-103 155-183 (194)
130 2eqy_A RBP2 like, jumonji, at 33.0 33 0.0011 26.2 3.2 38 14-51 46-94 (122)
131 2rq5_A Protein jumonji; develo 32.1 51 0.0017 25.3 4.2 40 66-105 46-98 (121)
132 1tty_A Sigma-A, RNA polymerase 31.7 82 0.0028 21.8 5.0 42 62-104 21-66 (87)
133 3cz6_A DNA-binding protein RAP 31.1 23 0.00077 29.1 2.1 14 3-16 113-126 (168)
134 2p1m_A SKP1-like protein 1A; F 30.9 45 0.0015 26.4 3.9 36 27-69 118-153 (160)
135 2kvs_A Uncharacterized protein 30.2 8.6 0.00029 27.9 -0.5 13 193-205 3-15 (80)
136 2kk0_A AT-rich interactive dom 29.7 33 0.0011 27.1 2.8 39 14-52 68-118 (145)
137 1xsv_A Hypothetical UPF0122 pr 29.2 1.1E+02 0.0039 22.5 5.7 42 62-104 28-69 (113)
138 2dbb_A Putative HTH-type trans 29.1 1E+02 0.0034 23.4 5.6 44 62-106 9-53 (151)
139 2q1z_A RPOE, ECF SIGE; ECF sig 28.9 59 0.002 25.0 4.2 29 74-103 150-178 (184)
140 2rnj_A Response regulator prot 28.0 69 0.0023 22.3 4.1 43 59-104 30-72 (91)
141 2yqf_A Ankyrin-1; death domain 28.0 91 0.0031 23.0 5.0 34 60-94 14-47 (111)
142 3v7d_A Suppressor of kinetocho 27.0 52 0.0018 26.4 3.6 36 27-69 126-161 (169)
143 2e1c_A Putative HTH-type trans 25.5 56 0.0019 26.0 3.6 42 10-52 27-68 (171)
144 2k27_A Paired box protein PAX- 25.3 2.2E+02 0.0076 21.5 10.8 67 5-75 24-100 (159)
145 2e1c_A Putative HTH-type trans 24.8 85 0.0029 24.8 4.5 43 62-105 27-70 (171)
146 3mzy_A RNA polymerase sigma-H 23.9 1.3E+02 0.0045 22.1 5.3 29 74-103 123-151 (164)
147 3e7l_A Transcriptional regulat 23.8 1.1E+02 0.0037 20.0 4.2 32 62-94 19-50 (63)
148 1rp3_A RNA polymerase sigma fa 23.8 1.6E+02 0.0054 23.3 6.1 30 73-103 201-230 (239)
149 2cyy_A Putative HTH-type trans 23.2 1.3E+02 0.0045 22.7 5.3 43 62-105 7-50 (151)
150 2of5_H Leucine-rich repeat and 23.1 85 0.0029 23.6 4.0 28 65-93 14-41 (118)
151 1ntc_A Protein (nitrogen regul 22.7 1.4E+02 0.0049 20.9 5.0 33 62-95 51-83 (91)
152 2o71_A Death domain-containing 22.6 1E+02 0.0035 23.3 4.3 27 66-93 26-52 (115)
153 1p4w_A RCSB; solution structur 22.3 1.9E+02 0.0063 20.9 5.6 46 56-104 32-77 (99)
154 2of5_A Death domain-containing 21.6 98 0.0034 23.3 4.0 27 66-93 26-52 (114)
155 3eyi_A Z-DNA-binding protein 1 21.0 83 0.0028 22.2 3.2 38 7-44 7-44 (72)
156 1s7o_A Hypothetical UPF0122 pr 20.9 1.8E+02 0.0062 21.4 5.4 42 62-104 25-66 (113)
157 2ast_A S-phase kinase-associat 20.1 70 0.0024 25.1 3.1 36 27-69 119-154 (159)
158 2cyy_A Putative HTH-type trans 20.0 89 0.003 23.8 3.6 39 11-50 8-46 (151)
No 1
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=100.00 E-value=8.2e-35 Score=226.53 Aligned_cols=103 Identities=49% Similarity=1.034 Sum_probs=98.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCChhHhhHHhcCCChhhhhhhhhcccCCCCCCCCCCHHHHHHHHHHHHHhCCchHHH
Q 025697 2 CTRGHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLDPRINRSPFTEEEEERLLASHRIHGNRWAVI 81 (249)
Q Consensus 2 ~~Kg~WT~EED~~L~~~V~~~G~~~W~~IA~~l~~Rt~~qcr~Rw~~~L~p~lkkg~WT~EED~~Llelv~~~G~~Ws~I 81 (249)
++||+||+|||++|+++|..||..+|..||..||+||+.||+.||.++|+|.+++++||+|||.+|+++|.+||.+|+.|
T Consensus 2 l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~I 81 (105)
T 1gv2_A 2 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEI 81 (105)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCHHHH
Confidence 57999999999999999999998889999999999999999999999999999999999999999999999999999999
Q ss_pred hhhCCCCCHHHHHHHHHHHHHHH
Q 025697 82 ARLFPGRTDNAVKNHWHVIMARR 104 (249)
Q Consensus 82 A~~lpgRT~~~cknrW~~~lkr~ 104 (249)
|+.|||||+++|++||+.+++++
T Consensus 82 a~~l~gRt~~~~k~rw~~~~~~~ 104 (105)
T 1gv2_A 82 AKLLPGRTDNAIKNHWNSTMRRK 104 (105)
T ss_dssp HTTCTTCCHHHHHHHHHHHTC--
T ss_pred HHHcCCCCHHHHHHHHHHHHhcc
Confidence 99999999999999999988765
No 2
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=100.00 E-value=2e-34 Score=225.59 Aligned_cols=103 Identities=31% Similarity=0.673 Sum_probs=99.7
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCChhHhhHHhcCCChhhhhhhhhcccCCCCCCCCCCHHHHHHHHHHHHHhCCchHHHhh
Q 025697 4 RGHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLDPRINRSPFTEEEEERLLASHRIHGNRWAVIAR 83 (249)
Q Consensus 4 Kg~WT~EED~~L~~~V~~~G~~~W~~IA~~l~~Rt~~qcr~Rw~~~L~p~lkkg~WT~EED~~Llelv~~~G~~Ws~IA~ 83 (249)
||+||+|||++|+++|..||..+|..||..||+||+.||++||.++|+|.+++++||.|||.+|+++|.+||++|+.||+
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~~Ia~ 80 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPKWNKISK 80 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcCHHHHHH
Confidence 79999999999999999999889999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCCHHHHHHHHHHHHHHHHh
Q 025697 84 LFPGRTDNAVKNHWHVIMARRCR 106 (249)
Q Consensus 84 ~lpgRT~~~cknrW~~~lkr~~~ 106 (249)
.|||||+++|++||+.++++..+
T Consensus 81 ~l~gRt~~~~k~rw~~l~r~~~~ 103 (107)
T 2k9n_A 81 FLKNRSDNNIRNRWMMIARHRAK 103 (107)
T ss_dssp HHSSSCHHHHHHHHHHHHHHHHS
T ss_pred HCCCCCHHHHHHHHHHHHhhHHH
Confidence 99999999999999999887654
No 3
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=100.00 E-value=2.1e-33 Score=225.86 Aligned_cols=102 Identities=38% Similarity=0.778 Sum_probs=98.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCChhHhhHHhcCCChhhhhhhhhcccCCCCCCCCCCHHHHHHHHHHHHHhCCchHHH
Q 025697 2 CTRGHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLDPRINRSPFTEEEEERLLASHRIHGNRWAVI 81 (249)
Q Consensus 2 ~~Kg~WT~EED~~L~~~V~~~G~~~W~~IA~~l~~Rt~~qcr~Rw~~~L~p~lkkg~WT~EED~~Llelv~~~G~~Ws~I 81 (249)
.+||+||+|||++|+++|..||. +|..||+.|++|++.||++||.++|+|.+++++||.|||++|+++|.+||.+|+.|
T Consensus 9 ~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G~~W~~I 87 (126)
T 3osg_A 9 AKKQKFTPEEDEMLKRAVAQHGS-DWKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYGRQWAII 87 (126)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHTT-CHHHHHHTCTTCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHCSCHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcCCCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHCcCHHHH
Confidence 57999999999999999999996 89999999999999999999999999999999999999999999999999999999
Q ss_pred hhhCCCCCHHHHHHHHHHHHHHH
Q 025697 82 ARLFPGRTDNAVKNHWHVIMARR 104 (249)
Q Consensus 82 A~~lpgRT~~~cknrW~~~lkr~ 104 (249)
|+.|||||+.+|++||..++++.
T Consensus 88 a~~l~gRt~~~~k~rw~~l~~k~ 110 (126)
T 3osg_A 88 AKFFPGRTDIHIKNRWVTISNKL 110 (126)
T ss_dssp HTTSTTCCHHHHHHHHHHHHHHT
T ss_pred HHHcCCCCHHHHHHHHHHHHHhc
Confidence 99999999999999999887653
No 4
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=100.00 E-value=5.7e-34 Score=230.48 Aligned_cols=104 Identities=44% Similarity=0.868 Sum_probs=101.0
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCChhHhhHHhcCCChhhhhhhhhcccCCCCCCCCCCHHHHHHHHHHHHHhCCchHHHhh
Q 025697 4 RGHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLDPRINRSPFTEEEEERLLASHRIHGNRWAVIAR 83 (249)
Q Consensus 4 Kg~WT~EED~~L~~~V~~~G~~~W~~IA~~l~~Rt~~qcr~Rw~~~L~p~lkkg~WT~EED~~Llelv~~~G~~Ws~IA~ 83 (249)
||+||+|||++|+.+|..||..+|..||..||+||+.||++||.++|+|.+++++||.|||++|+++|.+||++|+.||+
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia~ 81 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVIAK 81 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTTSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCCCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHHHHH
Confidence 79999999999999999999889999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCCHHHHHHHHHHHHHHHHhh
Q 025697 84 LFPGRTDNAVKNHWHVIMARRCRE 107 (249)
Q Consensus 84 ~lpgRT~~~cknrW~~~lkr~~~~ 107 (249)
.|||||+++|++||+.++++++..
T Consensus 82 ~l~gRt~~~~k~rw~~~l~~~~~~ 105 (131)
T 3zqc_A 82 LIPGRTDNAIKNRWNSSISKRIST 105 (131)
T ss_dssp TSTTCCHHHHHHHHHHTTGGGCCC
T ss_pred HcCCCCHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999887654
No 5
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=100.00 E-value=2.2e-33 Score=225.93 Aligned_cols=103 Identities=50% Similarity=1.026 Sum_probs=99.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCChhHhhHHhcCCChhhhhhhhhcccCCCCCCCCCCHHHHHHHHHHHHHhCCchHHH
Q 025697 2 CTRGHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLDPRINRSPFTEEEEERLLASHRIHGNRWAVI 81 (249)
Q Consensus 2 ~~Kg~WT~EED~~L~~~V~~~G~~~W~~IA~~l~~Rt~~qcr~Rw~~~L~p~lkkg~WT~EED~~Llelv~~~G~~Ws~I 81 (249)
+++|+||+|||++|+++|..||..+|..||..||+||+.||+.||.++|+|.+++++||+|||.+|+++|.+||.+|+.|
T Consensus 25 ~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~G~~W~~I 104 (128)
T 1h8a_C 25 LNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEI 104 (128)
T ss_dssp CCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCSSSCCSCCCHHHHHHHHHHHHHHCSCHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHCcCHHHH
Confidence 57899999999999999999998889999999999999999999999999999999999999999999999999999999
Q ss_pred hhhCCCCCHHHHHHHHHHHHHHH
Q 025697 82 ARLFPGRTDNAVKNHWHVIMARR 104 (249)
Q Consensus 82 A~~lpgRT~~~cknrW~~~lkr~ 104 (249)
|+.|||||+++|++||+.+++++
T Consensus 105 a~~l~gRt~~~~k~r~~~~~~~~ 127 (128)
T 1h8a_C 105 AKLLPGRTDNAVKNHWNSTMRRK 127 (128)
T ss_dssp GGGSTTCCHHHHHHHHHTTTTC-
T ss_pred HHHCCCCCHHHHHHHHHHHHhcc
Confidence 99999999999999999888765
No 6
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.97 E-value=3.3e-31 Score=220.38 Aligned_cols=103 Identities=49% Similarity=1.034 Sum_probs=99.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCChhHhhHHhcCCChhhhhhhhhcccCCCCCCCCCCHHHHHHHHHHHHHhCCchHHH
Q 025697 2 CTRGHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLDPRINRSPFTEEEEERLLASHRIHGNRWAVI 81 (249)
Q Consensus 2 ~~Kg~WT~EED~~L~~~V~~~G~~~W~~IA~~l~~Rt~~qcr~Rw~~~L~p~lkkg~WT~EED~~Llelv~~~G~~Ws~I 81 (249)
+++|+||+|||++|+.+|..||..+|..||..||+||+.||+.||.++|+|.+++++||+|||.+|++++.+||.+|+.|
T Consensus 56 ~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~g~~W~~I 135 (159)
T 1h89_C 56 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEI 135 (159)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTSTTCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHHHHCSCHHHH
T ss_pred cCCCCCChHHHHHHHHHHHHhCcccHHHHHHHcCCCCHHHHHHHHHHHhCccccccCCChHHHHHHHHHHHHHCCCHHHH
Confidence 57899999999999999999998789999999999999999999999999999999999999999999999999999999
Q ss_pred hhhCCCCCHHHHHHHHHHHHHHH
Q 025697 82 ARLFPGRTDNAVKNHWHVIMARR 104 (249)
Q Consensus 82 A~~lpgRT~~~cknrW~~~lkr~ 104 (249)
|+.|||||+++|++||+.+++++
T Consensus 136 a~~l~gRt~~~~knr~~~~~r~~ 158 (159)
T 1h89_C 136 AKLLPGRTDNAIKNHWNSTMRRK 158 (159)
T ss_dssp HTTSTTCCHHHHHHHHHTTTCC-
T ss_pred HHHCCCCCHHHHHHHHHHHHhcc
Confidence 99999999999999999888765
No 7
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.96 E-value=2.5e-30 Score=215.08 Aligned_cols=103 Identities=34% Similarity=0.741 Sum_probs=60.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCChhHhhHHhcCCChhhhhhhhhcccCCCCCCCCCCHHHHHHHHHHHHHhCC-chHH
Q 025697 2 CTRGHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLDPRINRSPFTEEEEERLLASHRIHGN-RWAV 80 (249)
Q Consensus 2 ~~Kg~WT~EED~~L~~~V~~~G~~~W~~IA~~l~~Rt~~qcr~Rw~~~L~p~lkkg~WT~EED~~Llelv~~~G~-~Ws~ 80 (249)
++||+||+|||++|+++|.+||..+|..||..||+|++.||+.||.++|+|.+++++||+|||++|+++|.+||. +|..
T Consensus 4 ~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~~ 83 (159)
T 1h89_C 4 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRWSV 83 (159)
T ss_dssp ---------------------------------------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccHHH
Confidence 478999999999999999999988999999999999999999999999999999999999999999999999995 7999
Q ss_pred HhhhCCCCCHHHHHHHHHHHHHHH
Q 025697 81 IARLFPGRTDNAVKNHWHVIMARR 104 (249)
Q Consensus 81 IA~~lpgRT~~~cknrW~~~lkr~ 104 (249)
||..|||||+.+|++||..++.+.
T Consensus 84 Ia~~l~~Rt~~qcr~Rw~~~l~p~ 107 (159)
T 1h89_C 84 IAKHLKGRIGKQCRERWHNHLNPE 107 (159)
T ss_dssp HHHTSTTCCHHHHHHHHHHTTCTT
T ss_pred HHHHcCCCCHHHHHHHHHHHhCcc
Confidence 999999999999999998876543
No 8
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=1.7e-22 Score=146.58 Aligned_cols=63 Identities=37% Similarity=0.801 Sum_probs=61.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCChhHhhHHhcCCChhhhhhhhhcccCCCCCCCCCCHHHH
Q 025697 2 CTRGHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLDPRINRSPFTEEEE 64 (249)
Q Consensus 2 ~~Kg~WT~EED~~L~~~V~~~G~~~W~~IA~~l~~Rt~~qcr~Rw~~~L~p~lkkg~WT~EED 64 (249)
+++|+||+|||++|+++|.+||..+|..||..|++||+.||+.||.++|+|.+++++||.|||
T Consensus 7 ~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd 69 (70)
T 2dim_A 7 GKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSGPSS 69 (70)
T ss_dssp STTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence 689999999999999999999988999999999999999999999999999999999999987
No 9
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.82 E-value=3.5e-21 Score=154.56 Aligned_cols=75 Identities=28% Similarity=0.696 Sum_probs=50.5
Q ss_pred hhHHhcCCChhhhhhhhhcccCCCCCCCCCCHHHHHHHHHHHHHhCC-chHHHhhhCCCCCHHHHHHHHHHHHHHH
Q 025697 30 IAEKLQGRSGKSCRLRWFNQLDPRINRSPFTEEEEERLLASHRIHGN-RWAVIARLFPGRTDNAVKNHWHVIMARR 104 (249)
Q Consensus 30 IA~~l~~Rt~~qcr~Rw~~~L~p~lkkg~WT~EED~~Llelv~~~G~-~Ws~IA~~lpgRT~~~cknrW~~~lkr~ 104 (249)
||+.||+||+.||+.||.++|+|.+++++||+|||++|+++|.+||. +|..||..|||||+.+|++||..++...
T Consensus 1 Ia~~~~~Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~ 76 (128)
T 1h8a_C 1 MEAVIKNRTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPE 76 (128)
T ss_dssp ---------------------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCSS
T ss_pred CccccCCCCHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhcccc
Confidence 78999999999999999999999999999999999999999999995 7999999999999999999998876543
No 10
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.76 E-value=7e-19 Score=154.21 Aligned_cols=103 Identities=17% Similarity=0.313 Sum_probs=91.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCC-----hhHhhHHhcCCChhhhhhhhhcccCCCCC---------------------
Q 025697 2 CTRGHWRPAEDEKLRELVERYGPHN-----WNAIAEKLQGRSGKSCRLRWFNQLDPRIN--------------------- 55 (249)
Q Consensus 2 ~~Kg~WT~EED~~L~~~V~~~G~~~-----W~~IA~~l~~Rt~~qcr~Rw~~~L~p~lk--------------------- 55 (249)
++|++||+|||++|+++|.++|..+ |..||+.|||||+.||+.||+.+|.+.+.
T Consensus 6 ~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln~vy~~ded~~Li~d~~Gn~ik 85 (246)
T 1ign_A 6 HNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDGNLIK 85 (246)
T ss_dssp --CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTSCBCE
T ss_pred CCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhcccccccCcchhhhhccCCCcee
Confidence 5789999999999999999998642 99999999999999999999999999886
Q ss_pred --------CCCCCHHHHHHHHHHHHH-h--------------------------------CC------------------
Q 025697 56 --------RSPFTEEEEERLLASHRI-H--------------------------------GN------------------ 76 (249)
Q Consensus 56 --------kg~WT~EED~~Llelv~~-~--------------------------------G~------------------ 76 (249)
+..||.+||-.|+..+.+ + |.
T Consensus 86 is~lp~siK~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~ 165 (246)
T 1ign_A 86 TKVLPPSIKRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYRTQSR 165 (246)
T ss_dssp ESSCCCCSCCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC-------------------------------CCCCC
T ss_pred eeccCccccCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCccccccCCcchhhhccccc
Confidence 789999999999998876 1 11
Q ss_pred -------chHHHhhhCCCCCHHHHHHHHHHHHHHH
Q 025697 77 -------RWAVIARLFPGRTDNAVKNHWHVIMARR 104 (249)
Q Consensus 77 -------~Ws~IA~~lpgRT~~~cknrW~~~lkr~ 104 (249)
.|..||+.+|+||..++|+||...++..
T Consensus 166 ~gp~~~~~fk~ia~~~P~HT~~SWRdRyrKfl~~~ 200 (246)
T 1ign_A 166 RGPIAREFFKHFAEEHAAHTENAWRDRFRKFLLAY 200 (246)
T ss_dssp CCCCCTTHHHHHHHHTTTSCHHHHHHHHHHTHHHH
T ss_pred cCcchHHHHHHHHHHCCCCChhhHHHHHHHHHhhc
Confidence 6999999999999999999998887665
No 11
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.74 E-value=1e-18 Score=139.52 Aligned_cols=79 Identities=24% Similarity=0.392 Sum_probs=75.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCChhHhhHHh----cCCChhhhhhhhhcccC-----CCCCCC-CCCHHHHHHHHHHH
Q 025697 2 CTRGHWRPAEDEKLRELVERYGPHNWNAIAEKL----QGRSGKSCRLRWFNQLD-----PRINRS-PFTEEEEERLLASH 71 (249)
Q Consensus 2 ~~Kg~WT~EED~~L~~~V~~~G~~~W~~IA~~l----~~Rt~~qcr~Rw~~~L~-----p~lkkg-~WT~EED~~Llelv 71 (249)
++|++||+|||+.|+++|++||.++|..|+..+ ++||+.+|++||+++|+ |.++++ +|+++|+.+|++++
T Consensus 15 r~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~~rv~~~h 94 (121)
T 2juh_A 15 RIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAH 94 (121)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhccCCcccCCCCCCHHHHHHHHHHH
Confidence 578999999999999999999988999999985 89999999999999997 999999 99999999999999
Q ss_pred HHhCCchHH
Q 025697 72 RIHGNRWAV 80 (249)
Q Consensus 72 ~~~G~~Ws~ 80 (249)
..+|++|+.
T Consensus 95 ~~~gn~~~~ 103 (121)
T 2juh_A 95 AYWSQQQGK 103 (121)
T ss_dssp HHHHHHHCC
T ss_pred HHHccchhc
Confidence 999999976
No 12
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.73 E-value=2.3e-18 Score=117.73 Aligned_cols=52 Identities=48% Similarity=1.085 Sum_probs=49.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCChhHhhHHhcCCChhhhhhhhhcccCCC
Q 025697 2 CTRGHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLDPR 53 (249)
Q Consensus 2 ~~Kg~WT~EED~~L~~~V~~~G~~~W~~IA~~l~~Rt~~qcr~Rw~~~L~p~ 53 (249)
++||+||+|||++|+++|.+||..+|..||..|++||+.||+.||.++|+|.
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPE 52 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcCcC
Confidence 5799999999999999999999878999999999999999999999999984
No 13
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.72 E-value=2.5e-18 Score=117.47 Aligned_cols=52 Identities=38% Similarity=0.810 Sum_probs=48.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCChhHhhHHhcCCChhhhhhhhhcccCCC
Q 025697 2 CTRGHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLDPR 53 (249)
Q Consensus 2 ~~Kg~WT~EED~~L~~~V~~~G~~~W~~IA~~l~~Rt~~qcr~Rw~~~L~p~ 53 (249)
|+||+||+|||++|+++|.+||.++|..||+.|++||+.||+.||.++|+|.
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPE 52 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCcC
Confidence 6899999999999999999999878999999999999999999999999984
No 14
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.72 E-value=5.5e-18 Score=119.11 Aligned_cols=54 Identities=30% Similarity=0.746 Sum_probs=51.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCChhHhhHHhcCCChhhhhhhhhcccCCCCC
Q 025697 2 CTRGHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLDPRIN 55 (249)
Q Consensus 2 ~~Kg~WT~EED~~L~~~V~~~G~~~W~~IA~~l~~Rt~~qcr~Rw~~~L~p~lk 55 (249)
++||+||+|||++|+++|.+||..+|..||+.|++||+.||+.||.++|+|.++
T Consensus 6 ~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~i~ 59 (60)
T 2d9a_A 6 SGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGPSS 59 (60)
T ss_dssp CCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSSSC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCccC
Confidence 679999999999999999999987899999999999999999999999999875
No 15
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.71 E-value=1.1e-17 Score=133.63 Aligned_cols=76 Identities=24% Similarity=0.330 Sum_probs=71.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCChhHhhHHh----cCCChhhhhhhhhccc-----CCCCCCCCCCHHH-HHHHHHHH
Q 025697 2 CTRGHWRPAEDEKLRELVERYGPHNWNAIAEKL----QGRSGKSCRLRWFNQL-----DPRINRSPFTEEE-EERLLASH 71 (249)
Q Consensus 2 ~~Kg~WT~EED~~L~~~V~~~G~~~W~~IA~~l----~~Rt~~qcr~Rw~~~L-----~p~lkkg~WT~EE-D~~Llelv 71 (249)
.+|++||+|||+.|+++|++||.++|..|+..+ ++||+.+|++||.+++ +|.++++.|+++| +.+|++++
T Consensus 29 r~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e~~~~v~~~h 108 (122)
T 2roh_A 29 RIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDRVLAAQ 108 (122)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCccccCCCCCCHHHHHHHHHHH
Confidence 368999999999999999999998999999975 8999999999999999 8999999999999 89999999
Q ss_pred HHhCCc
Q 025697 72 RIHGNR 77 (249)
Q Consensus 72 ~~~G~~ 77 (249)
..||++
T Consensus 109 ~~~g~~ 114 (122)
T 2roh_A 109 AYWSVD 114 (122)
T ss_dssp HHHHSS
T ss_pred HHHhhH
Confidence 999964
No 16
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.70 E-value=9.7e-18 Score=122.86 Aligned_cols=58 Identities=28% Similarity=0.400 Sum_probs=46.7
Q ss_pred hhhhhhcccCCCCCCCCCCHHHHHHHHHHHHHhCCchHHHhhhCCCCCHHHHHHHHHHH
Q 025697 42 CRLRWFNQLDPRINRSPFTEEEEERLLASHRIHGNRWAVIARLFPGRTDNAVKNHWHVI 100 (249)
Q Consensus 42 cr~Rw~~~L~p~lkkg~WT~EED~~Llelv~~~G~~Ws~IA~~lpgRT~~~cknrW~~~ 100 (249)
.--||.++|+|.+++++||+|||++|+++|.+||++|+.||+.| |||+++||+||+.+
T Consensus 9 ~~~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~~L 66 (73)
T 2llk_A 9 SGRENLYFQGDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRLM 66 (73)
T ss_dssp ----------CCCCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHHHC
T ss_pred cCcceeeecCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHHHH
Confidence 45689999999999999999999999999999999999999999 99999999999864
No 17
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.69 E-value=1.6e-17 Score=119.94 Aligned_cols=59 Identities=27% Similarity=0.429 Sum_probs=55.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCChhHhhHHhc--CCChhhhhhhhhcccCCCCCCCCCC
Q 025697 2 CTRGHWRPAEDEKLRELVERYGPHNWNAIAEKLQ--GRSGKSCRLRWFNQLDPRINRSPFT 60 (249)
Q Consensus 2 ~~Kg~WT~EED~~L~~~V~~~G~~~W~~IA~~l~--~Rt~~qcr~Rw~~~L~p~lkkg~WT 60 (249)
++||+||+|||++|+++|.+||.++|..||..|+ +||+.||++||.++|+|.+.++..+
T Consensus 8 ~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~~~ 68 (69)
T 1ity_A 8 RKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDSE 68 (69)
T ss_dssp SSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCCCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCCCC
Confidence 5799999999999999999999889999999999 9999999999999999999987753
No 18
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.68 E-value=2e-17 Score=118.25 Aligned_cols=54 Identities=26% Similarity=0.514 Sum_probs=49.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCChhHhhHHhc--CCChhhhhhhhhcccCCCCC
Q 025697 2 CTRGHWRPAEDEKLRELVERYGPHNWNAIAEKLQ--GRSGKSCRLRWFNQLDPRIN 55 (249)
Q Consensus 2 ~~Kg~WT~EED~~L~~~V~~~G~~~W~~IA~~l~--~Rt~~qcr~Rw~~~L~p~lk 55 (249)
.+|++||+|||++|+++|++||.++|..||+.++ +||+.||++||.++++|.++
T Consensus 9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~glN 64 (64)
T 3sjm_A 9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN 64 (64)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCCC
Confidence 4799999999999999999999889999999876 99999999999999988764
No 19
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=1.2e-16 Score=114.39 Aligned_cols=58 Identities=22% Similarity=0.458 Sum_probs=55.1
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHHHhCCchHHHhhhCCCCCHHHHHHHHHHHHHHHHhh
Q 025697 49 QLDPRINRSPFTEEEEERLLASHRIHGNRWAVIARLFPGRTDNAVKNHWHVIMARRCRE 107 (249)
Q Consensus 49 ~L~p~lkkg~WT~EED~~Llelv~~~G~~Ws~IA~~lpgRT~~~cknrW~~~lkr~~~~ 107 (249)
+|+|.+++++||.|||++|+++|.+||.+|..||. ++|||+.||++||..++++.++.
T Consensus 2 ~L~P~~~k~~WT~eED~~L~~~~~~~g~~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~ 59 (66)
T 2din_A 2 SSGSSGKKTEWSREEEEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLEHYEFLLDKAAQR 59 (66)
T ss_dssp CCSSSSSCCCCCHHHHHHHHHHHHHCTTCHHHHHH-HHSSCHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCCCHHHHhc-ccCcCHHHHHHHHHHHhChHhcC
Confidence 78999999999999999999999999999999999 88999999999999999887754
No 20
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.65 E-value=2.2e-16 Score=114.91 Aligned_cols=58 Identities=22% Similarity=0.230 Sum_probs=54.6
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHhCCchHHHhhhCCCCCHHHHHHHHHHHHHHHHhh
Q 025697 50 LDPRINRSPFTEEEEERLLASHRIHGNRWAVIARLFPGRTDNAVKNHWHVIMARRCRE 107 (249)
Q Consensus 50 L~p~lkkg~WT~EED~~Llelv~~~G~~Ws~IA~~lpgRT~~~cknrW~~~lkr~~~~ 107 (249)
++|.+++++||.|||++|+++|.+||.+|..||..|||||+.||++||+.++++..+.
T Consensus 3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 3 SGSSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp CCCSSCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc
Confidence 5788999999999999999999999999999999999999999999999999887654
No 21
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.64 E-value=1e-16 Score=110.06 Aligned_cols=49 Identities=31% Similarity=0.539 Sum_probs=46.9
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCChhHhhHHhc--CCChhhhhhhhhcccC
Q 025697 3 TRGHWRPAEDEKLRELVERYGPHNWNAIAEKLQ--GRSGKSCRLRWFNQLD 51 (249)
Q Consensus 3 ~Kg~WT~EED~~L~~~V~~~G~~~W~~IA~~l~--~Rt~~qcr~Rw~~~L~ 51 (249)
+||+||+|||++|+++|.+||+++|..||..|+ +||+.||++||.+++.
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence 689999999999999999999889999999999 9999999999999875
No 22
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.64 E-value=1.2e-16 Score=112.47 Aligned_cols=52 Identities=19% Similarity=0.427 Sum_probs=49.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCChhHhhHHhcCCChhhhhhhhhcccCCC
Q 025697 2 CTRGHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLDPR 53 (249)
Q Consensus 2 ~~Kg~WT~EED~~L~~~V~~~G~~~W~~IA~~l~~Rt~~qcr~Rw~~~L~p~ 53 (249)
+.+++||+|||++|+++|.+||..+|..||+.|++||+.||+.||.++|.+.
T Consensus 6 ~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~~ 57 (60)
T 1x41_A 6 SGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSGP 57 (60)
T ss_dssp CCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTCS
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccCC
Confidence 5799999999999999999999889999999999999999999999998764
No 23
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.61 E-value=4.4e-16 Score=108.95 Aligned_cols=49 Identities=24% Similarity=0.489 Sum_probs=46.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCChhHhhHHhc-CCChhhhhhhhhccc
Q 025697 2 CTRGHWRPAEDEKLRELVERYGPHNWNAIAEKLQ-GRSGKSCRLRWFNQL 50 (249)
Q Consensus 2 ~~Kg~WT~EED~~L~~~V~~~G~~~W~~IA~~l~-~Rt~~qcr~Rw~~~L 50 (249)
+.+++||+|||++|+++|++||..+|..||+.|+ +||+.||+.||.+++
T Consensus 7 ~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 7 GFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp SCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 4589999999999999999999889999999999 999999999999865
No 24
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.60 E-value=4.6e-16 Score=109.20 Aligned_cols=54 Identities=30% Similarity=0.557 Sum_probs=50.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC-CchHHHhhhCCCCCHHHHHHHHHHHHHHH
Q 025697 51 DPRINRSPFTEEEEERLLASHRIHG-NRWAVIARLFPGRTDNAVKNHWHVIMARR 104 (249)
Q Consensus 51 ~p~lkkg~WT~EED~~Llelv~~~G-~~Ws~IA~~lpgRT~~~cknrW~~~lkr~ 104 (249)
+|.+++++||+|||++|+++|.+|| ++|..||..|||||+.||++||..+|++.
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~ 57 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGP 57 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCc
Confidence 4788999999999999999999999 69999999999999999999998877543
No 25
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.59 E-value=2e-15 Score=102.88 Aligned_cols=49 Identities=31% Similarity=0.674 Sum_probs=45.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCC-chHHHhhhCCCCCHHHHHHHHHHHHH
Q 025697 54 INRSPFTEEEEERLLASHRIHGN-RWAVIARLFPGRTDNAVKNHWHVIMA 102 (249)
Q Consensus 54 lkkg~WT~EED~~Llelv~~~G~-~Ws~IA~~lpgRT~~~cknrW~~~lk 102 (249)
+++++||.|||++|+++|.+||. +|..||..|||||+.||++||..+|.
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~ 50 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLN 50 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHS
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999997 99999999999999999999998874
No 26
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.58 E-value=2.4e-15 Score=103.11 Aligned_cols=49 Identities=24% Similarity=0.460 Sum_probs=46.2
Q ss_pred CCCCCCHHHHHHHHHHHHHhC-CchHHHhhhCC--CCCHHHHHHHHHHHHHH
Q 025697 55 NRSPFTEEEEERLLASHRIHG-NRWAVIARLFP--GRTDNAVKNHWHVIMAR 103 (249)
Q Consensus 55 kkg~WT~EED~~Llelv~~~G-~~Ws~IA~~lp--gRT~~~cknrW~~~lkr 103 (249)
++++||+|||++|+++|.+|| ++|+.||..|| |||+.||++||..+++.
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k~ 52 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKL 52 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence 478999999999999999999 79999999999 99999999999998764
No 27
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=3.9e-16 Score=111.66 Aligned_cols=54 Identities=28% Similarity=0.500 Sum_probs=49.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCChhHhhHHhcCCChhhhhhhhhcccCCCCCCC
Q 025697 2 CTRGHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLDPRINRS 57 (249)
Q Consensus 2 ~~Kg~WT~EED~~L~~~V~~~G~~~W~~IA~~l~~Rt~~qcr~Rw~~~L~p~lkkg 57 (249)
+++|+||+|||++|+++|..||. +|..||+ ++|||+.||+.||.++|+|.++++
T Consensus 7 ~~k~~WT~eED~~L~~~~~~~g~-~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~ 60 (66)
T 2din_A 7 GKKTEWSREEEEKLLHLAKLMPT-QWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRD 60 (66)
T ss_dssp SSCCCCCHHHHHHHHHHHHHCTT-CHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCHHHHHHHHHHHHHcCC-CHHHHhc-ccCcCHHHHHHHHHHHhChHhcCC
Confidence 68999999999999999999996 8999999 889999999999999998866554
No 28
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.56 E-value=4.7e-15 Score=106.97 Aligned_cols=57 Identities=21% Similarity=0.356 Sum_probs=52.4
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHhC-CchHHHhhhCC--CCCHHHHHHHHHHHHHHHHh
Q 025697 50 LDPRINRSPFTEEEEERLLASHRIHG-NRWAVIARLFP--GRTDNAVKNHWHVIMARRCR 106 (249)
Q Consensus 50 L~p~lkkg~WT~EED~~Llelv~~~G-~~Ws~IA~~lp--gRT~~~cknrW~~~lkr~~~ 106 (249)
..+..++++||+|||++|+++|.+|| ++|+.||..|+ |||+.||++||..+++..+.
T Consensus 4 ~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~ 63 (69)
T 1ity_A 4 KHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLI 63 (69)
T ss_dssp TTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCC
Confidence 45677899999999999999999999 79999999999 99999999999999987654
No 29
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.56 E-value=4.1e-15 Score=101.45 Aligned_cols=49 Identities=33% Similarity=0.717 Sum_probs=45.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCC-chHHHhhhCCCCCHHHHHHHHHHHHH
Q 025697 54 INRSPFTEEEEERLLASHRIHGN-RWAVIARLFPGRTDNAVKNHWHVIMA 102 (249)
Q Consensus 54 lkkg~WT~EED~~Llelv~~~G~-~Ws~IA~~lpgRT~~~cknrW~~~lk 102 (249)
+++++||+|||++|+++|.+||. +|..||..|+|||+.||++||..+|.
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~ 50 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLN 50 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTS
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence 47899999999999999999996 79999999999999999999987764
No 30
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.55 E-value=4.9e-15 Score=104.17 Aligned_cols=52 Identities=19% Similarity=0.311 Sum_probs=48.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC-CchHHHhhhCCCCCHHHHHHHHHHHHH
Q 025697 51 DPRINRSPFTEEEEERLLASHRIHG-NRWAVIARLFPGRTDNAVKNHWHVIMA 102 (249)
Q Consensus 51 ~p~lkkg~WT~EED~~Llelv~~~G-~~Ws~IA~~lpgRT~~~cknrW~~~lk 102 (249)
.+.+.+++||+|||++|+++|.+|| ++|..||++|||||+.||++||..++.
T Consensus 3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~ 55 (60)
T 1x41_A 3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFS 55 (60)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHcc
Confidence 3568899999999999999999999 899999999999999999999987764
No 31
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=1.4e-15 Score=111.37 Aligned_cols=56 Identities=23% Similarity=0.421 Sum_probs=51.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCC-----CChhHhhHHhcCCChhhhhhhhhcccCCCCCCC
Q 025697 2 CTRGHWRPAEDEKLRELVERYGP-----HNWNAIAEKLQGRSGKSCRLRWFNQLDPRINRS 57 (249)
Q Consensus 2 ~~Kg~WT~EED~~L~~~V~~~G~-----~~W~~IA~~l~~Rt~~qcr~Rw~~~L~p~lkkg 57 (249)
+.+++||+|||++|+++|..||. .+|..||+.|++||+.||+.||.++|.+.++.|
T Consensus 6 ~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k~g 66 (75)
T 2yum_A 6 SGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTKAG 66 (75)
T ss_dssp CCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGSTTC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcC
Confidence 57899999999999999999996 689999999999999999999999998876665
No 32
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=2.9e-15 Score=108.25 Aligned_cols=57 Identities=21% Similarity=0.347 Sum_probs=51.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC-CchHHHhhhCCCCCHHHHHHHHHHHHHHHHhh
Q 025697 51 DPRINRSPFTEEEEERLLASHRIHG-NRWAVIARLFPGRTDNAVKNHWHVIMARRCRE 107 (249)
Q Consensus 51 ~p~lkkg~WT~EED~~Llelv~~~G-~~Ws~IA~~lpgRT~~~cknrW~~~lkr~~~~ 107 (249)
.|.+++++||.|||++|+++|.+|| ++|..||..|||||+.||++||..+|...+.+
T Consensus 4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~~ 61 (70)
T 2dim_A 4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKK 61 (70)
T ss_dssp CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCcccC
Confidence 4678999999999999999999999 89999999999999999999999888765543
No 33
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.54 E-value=2.3e-15 Score=109.50 Aligned_cols=54 Identities=13% Similarity=0.274 Sum_probs=50.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCChhHhhHHhcCCChhhhhhhhhcccCCCCCC
Q 025697 2 CTRGHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLDPRINR 56 (249)
Q Consensus 2 ~~Kg~WT~EED~~L~~~V~~~G~~~W~~IA~~l~~Rt~~qcr~Rw~~~L~p~lkk 56 (249)
+++|+||+|||++|+++|..||. +|..||..||+||+.||+.||.++|.+.++.
T Consensus 7 ~~~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 7 GYSVKWTIEEKELFEQGLAKFGR-RWTKISKLIGSRTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp SCCCCCCHHHHHHHHHHHHHTCS-CHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS
T ss_pred cCCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc
Confidence 68999999999999999999996 7999999999999999999999998775554
No 34
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.52 E-value=1.7e-14 Score=102.95 Aligned_cols=51 Identities=27% Similarity=0.530 Sum_probs=46.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHhC-CchHHHhhhCC--CCCHHHHHHHHHHHHHHH
Q 025697 54 INRSPFTEEEEERLLASHRIHG-NRWAVIARLFP--GRTDNAVKNHWHVIMARR 104 (249)
Q Consensus 54 lkkg~WT~EED~~Llelv~~~G-~~Ws~IA~~lp--gRT~~~cknrW~~~lkr~ 104 (249)
.++++||+|||++|+++|.+|| ++|+.||+.+| |||+.||++||..+++..
T Consensus 9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~g 62 (64)
T 3sjm_A 9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLG 62 (64)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccC
Confidence 5788999999999999999999 69999999876 999999999999988754
No 35
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.51 E-value=2.2e-14 Score=107.47 Aligned_cols=69 Identities=26% Similarity=0.446 Sum_probs=61.3
Q ss_pred CCCCHHHHHHHHHHHHHHCCCChhHhhHH----hcCCChhhhhhhhhccc-----CCCCCCC-CCCHHHHHHHHHHHHH
Q 025697 5 GHWRPAEDEKLRELVERYGPHNWNAIAEK----LQGRSGKSCRLRWFNQL-----DPRINRS-PFTEEEEERLLASHRI 73 (249)
Q Consensus 5 g~WT~EED~~L~~~V~~~G~~~W~~IA~~----l~~Rt~~qcr~Rw~~~L-----~p~lkkg-~WT~EED~~Llelv~~ 73 (249)
++||+|||+.|+++|++||.++|..|++. |++||+.+|++||++++ +|.++++ +...+...+++.++..
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~~~p~~~~~~~~p~~~~~rv~~~~a~ 79 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHAY 79 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhccCCcccccCCCCCHHHHHHHHHHHHH
Confidence 58999999999999999999899999996 79999999999999988 6766665 7888888889888764
No 36
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=1.1e-14 Score=106.44 Aligned_cols=56 Identities=20% Similarity=0.210 Sum_probs=51.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC------CchHHHhhhCCCCCHHHHHHHHHHHHHHHHh
Q 025697 51 DPRINRSPFTEEEEERLLASHRIHG------NRWAVIARLFPGRTDNAVKNHWHVIMARRCR 106 (249)
Q Consensus 51 ~p~lkkg~WT~EED~~Llelv~~~G------~~Ws~IA~~lpgRT~~~cknrW~~~lkr~~~ 106 (249)
+|.+.+++||.|||++|+++|.+|| ++|..||.+|+|||..||++||+.++.+..+
T Consensus 3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k 64 (75)
T 2yum_A 3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTK 64 (75)
T ss_dssp CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGST
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHh
Confidence 4778999999999999999999999 7899999999999999999999888876554
No 37
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.50 E-value=2.9e-14 Score=99.67 Aligned_cols=49 Identities=22% Similarity=0.333 Sum_probs=45.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhC-CchHHHhhhCC-CCCHHHHHHHHHHH
Q 025697 52 PRINRSPFTEEEEERLLASHRIHG-NRWAVIARLFP-GRTDNAVKNHWHVI 100 (249)
Q Consensus 52 p~lkkg~WT~EED~~Llelv~~~G-~~Ws~IA~~lp-gRT~~~cknrW~~~ 100 (249)
..+.+++||+|||++|+++|.+|| ++|..||++|| |||+.||+.||..+
T Consensus 5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~ 55 (58)
T 2elk_A 5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKT 55 (58)
T ss_dssp CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 346688999999999999999999 89999999999 99999999999765
No 38
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.47 E-value=2.8e-15 Score=120.66 Aligned_cols=79 Identities=24% Similarity=0.481 Sum_probs=57.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCChhHhhHHhcCCChhhhhhhhhcccCCCCCCCCCCHHHHHHHHHHHHHhCCchHHH
Q 025697 2 CTRGHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLDPRINRSPFTEEEEERLLASHRIHGNRWAVI 81 (249)
Q Consensus 2 ~~Kg~WT~EED~~L~~~V~~~G~~~W~~IA~~l~~Rt~~qcr~Rw~~~L~p~lkkg~WT~EED~~Llelv~~~G~~Ws~I 81 (249)
+++|+||+|||++|+++|..|| .+|..||..|||||+.+|+.||+++|++.+..++|+.+- +......+..|+.|
T Consensus 52 ~~~~~Wt~eEd~~L~~~~~~~G-~~W~~Ia~~l~gRt~~~~k~rw~~~l~~~~~~~~~~~~~----~~p~~~kk~~~~~i 126 (131)
T 3zqc_A 52 VVKHAWTPEEDETIFRNYLKLG-SKWSVIAKLIPGRTDNAIKNRWNSSISKRISTNSNHKEI----LLPDRSKKRKAADV 126 (131)
T ss_dssp CCCSCCCHHHHHHHHHHHHHSC-SCHHHHTTTSTTCCHHHHHHHHHHTTGGGCCCCTTSCCC----CCCCCC--------
T ss_pred ccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCCCcccc----cCchhhhhhhhhhc
Confidence 6789999999999999999999 569999999999999999999999999999999887661 11111223457777
Q ss_pred hhhC
Q 025697 82 ARLF 85 (249)
Q Consensus 82 A~~l 85 (249)
++.|
T Consensus 127 ~k~~ 130 (131)
T 3zqc_A 127 PKKL 130 (131)
T ss_dssp ----
T ss_pred chhc
Confidence 6654
No 39
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=99.21 E-value=3.5e-15 Score=113.03 Aligned_cols=56 Identities=25% Similarity=0.315 Sum_probs=52.7
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHHHhCCchHHHhhhCCCCCHHHHHHHHHHHHHHH
Q 025697 49 QLDPRINRSPFTEEEEERLLASHRIHGNRWAVIARLFPGRTDNAVKNHWHVIMARR 104 (249)
Q Consensus 49 ~L~p~lkkg~WT~EED~~Llelv~~~G~~Ws~IA~~lpgRT~~~cknrW~~~lkr~ 104 (249)
.+.|.+++++||.|||++|+++|.+||.+|+.||..|||||+.||++||+.++++.
T Consensus 9 ~~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~ 64 (89)
T 2ltp_A 9 SGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQ 64 (89)
Confidence 46788999999999999999999999999999999999999999999999988764
No 40
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.47 E-value=3.4e-14 Score=110.76 Aligned_cols=74 Identities=23% Similarity=0.314 Sum_probs=64.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCChhHhhHHh----cCCChhhhhhhhhccc-----CCCCCCCCCCHHHHH-HHHHHH
Q 025697 2 CTRGHWRPAEDEKLRELVERYGPHNWNAIAEKL----QGRSGKSCRLRWFNQL-----DPRINRSPFTEEEEE-RLLASH 71 (249)
Q Consensus 2 ~~Kg~WT~EED~~L~~~V~~~G~~~W~~IA~~l----~~Rt~~qcr~Rw~~~L-----~p~lkkg~WT~EED~-~Llelv 71 (249)
++|++||+|||+.|+++|++||.++|..|++.+ ++||+.+|++||++++ +|.++++.=++.|-. ++++|+
T Consensus 11 r~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~~~p~~~rg~~~P~~~l~rv~~~~ 90 (105)
T 2aje_A 11 RIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQQRRGEPVPQELLNRVLNAH 90 (105)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTTCCTTTTTCCSCCCHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCcccccCCCCCHHHHHHHHHHH
Confidence 478999999999999999999998999999965 8999999999999998 688888876666555 488888
Q ss_pred HHhC
Q 025697 72 RIHG 75 (249)
Q Consensus 72 ~~~G 75 (249)
..+|
T Consensus 91 ~~~~ 94 (105)
T 2aje_A 91 GYWT 94 (105)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7766
No 41
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.46 E-value=7.5e-14 Score=102.15 Aligned_cols=47 Identities=36% Similarity=0.493 Sum_probs=43.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCChhHhhHHhcCCChhhhhhhhhccc
Q 025697 2 CTRGHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQL 50 (249)
Q Consensus 2 ~~Kg~WT~EED~~L~~~V~~~G~~~W~~IA~~l~~Rt~~qcr~Rw~~~L 50 (249)
++||+||+|||++|+++|.+||.. |..||+.| |||+.||+.||+.+.
T Consensus 21 i~k~~wT~EED~~L~~l~~~~G~k-W~~IA~~l-gRt~~q~knRw~~L~ 67 (73)
T 2llk_A 21 NHVGKYTPEEIEKLKELRIKHGND-WATIGAAL-GRSASSVKDRCRLMK 67 (73)
T ss_dssp CCCCSSCHHHHHHHHHHHHHHSSC-HHHHHHHH-TSCHHHHHHHHHHCS
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCC-HHHHHHHh-CCCHHHHHHHHHHHH
Confidence 689999999999999999999964 99999999 999999999998543
No 42
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.40 E-value=1.8e-13 Score=101.52 Aligned_cols=46 Identities=26% Similarity=0.575 Sum_probs=44.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCChhHhhHHhcCCChhhhhhhhhcc
Q 025697 3 TRGHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQ 49 (249)
Q Consensus 3 ~Kg~WT~EED~~L~~~V~~~G~~~W~~IA~~l~~Rt~~qcr~Rw~~~ 49 (249)
.+++||+|||++|+++|++|| .+|..||+.|++||+.||+.||.++
T Consensus 17 ~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~~v~~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 17 AGREWTEQETLLLLEALEMYK-DDWNKVSEHVGSRTQDECILHFLRL 62 (79)
T ss_dssp CSCCCCHHHHHHHHHHHHHSS-SCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred cCCCcCHHHHHHHHHHHHHhC-CCHHHHHHHcCCCCHHHHHHHHHHh
Confidence 478999999999999999999 7899999999999999999999997
No 43
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.40 E-value=4.5e-13 Score=97.98 Aligned_cols=51 Identities=18% Similarity=0.410 Sum_probs=46.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhC----CchHHHhhhCCCCCHHHHHHHHHHHHH
Q 025697 52 PRINRSPFTEEEEERLLASHRIHG----NRWAVIARLFPGRTDNAVKNHWHVIMA 102 (249)
Q Consensus 52 p~lkkg~WT~EED~~Llelv~~~G----~~Ws~IA~~lpgRT~~~cknrW~~~lk 102 (249)
+...+++||.+||.+|++++.+|| .+|..||.+|||||..+|++||..++.
T Consensus 14 ~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 14 ARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVS 68 (73)
T ss_dssp TTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHS
T ss_pred cccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 456788999999999999999999 689999999999999999999988764
No 44
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.36 E-value=1.4e-13 Score=100.69 Aligned_cols=51 Identities=18% Similarity=0.398 Sum_probs=46.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCC---CChhHhhHHhcCCChhhhhhhhhcccCC
Q 025697 2 CTRGHWRPAEDEKLRELVERYGP---HNWNAIAEKLQGRSGKSCRLRWFNQLDP 52 (249)
Q Consensus 2 ~~Kg~WT~EED~~L~~~V~~~G~---~~W~~IA~~l~~Rt~~qcr~Rw~~~L~p 52 (249)
+.+++||++||++|+.+++.||. .+|.+||+.|||||..||+.||.+++..
T Consensus 16 ~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~d 69 (73)
T 2cqr_A 16 SAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVSG 69 (73)
T ss_dssp CSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHSS
T ss_pred cCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence 46899999999999999999993 4799999999999999999999987653
No 45
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.35 E-value=5.1e-13 Score=99.06 Aligned_cols=48 Identities=19% Similarity=0.291 Sum_probs=44.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCchHHHhhhCCCCCHHHHHHHHHHH
Q 025697 53 RINRSPFTEEEEERLLASHRIHGNRWAVIARLFPGRTDNAVKNHWHVI 100 (249)
Q Consensus 53 ~lkkg~WT~EED~~Llelv~~~G~~Ws~IA~~lpgRT~~~cknrW~~~ 100 (249)
...+++||.|||.+|+++|.+||++|..||++|++||+.||+.||..+
T Consensus 15 ~~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 15 ASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL 62 (79)
T ss_dssp SCCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred cccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence 356789999999999999999999999999999999999999999543
No 46
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=99.02 E-value=1e-13 Score=104.95 Aligned_cols=50 Identities=22% Similarity=0.357 Sum_probs=47.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCChhHhhHHhcCCChhhhhhhhhcccCC
Q 025697 2 CTRGHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLDP 52 (249)
Q Consensus 2 ~~Kg~WT~EED~~L~~~V~~~G~~~W~~IA~~l~~Rt~~qcr~Rw~~~L~p 52 (249)
+.+|+||+|||++|+++|..||. +|..||..|+|||+.||+.||.++|..
T Consensus 14 ~~~~~WT~eEd~~l~~~~~~~G~-~W~~IA~~l~gRt~~q~k~r~~~~lrk 63 (89)
T 2ltp_A 14 LYFQGWTEEEMGTAKKGLLEHGR-NWSAIARMVGSKTVSQCKNFYFNYKKR 63 (89)
Confidence 57899999999999999999996 799999999999999999999998864
No 47
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.32 E-value=8.8e-13 Score=101.83 Aligned_cols=51 Identities=24% Similarity=0.566 Sum_probs=46.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCChhHhhHHhcCCChhhhhhhhhcccCCC
Q 025697 2 CTRGHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLDPR 53 (249)
Q Consensus 2 ~~Kg~WT~EED~~L~~~V~~~G~~~W~~IA~~l~~Rt~~qcr~Rw~~~L~p~ 53 (249)
+++|+||+|||++|+.+|..||. +|..||+.|||||+.+|+.||..+++..
T Consensus 54 ~~~~~Wt~eEd~~L~~~~~~~G~-~W~~Ia~~l~gRt~~~~k~rw~~~~~~~ 104 (105)
T 1gv2_A 54 VKKTSWTEEEDRIIYQAHKRLGN-RWAEIAKLLPGRTDNAIKNHWNSTMRRK 104 (105)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHSS-CHHHHHTTCTTCCHHHHHHHHHHHTC--
T ss_pred ccccCCCHHHHHHHHHHHHHhCC-CHHHHHHHcCCCCHHHHHHHHHHHHhcc
Confidence 57999999999999999999994 6999999999999999999999988753
No 48
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.32 E-value=1.2e-12 Score=104.52 Aligned_cols=58 Identities=28% Similarity=0.514 Sum_probs=51.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCchHHHhhhCCCCCHHHHHHHHHHHHHHHHhhh
Q 025697 51 DPRINRSPFTEEEEERLLASHRIHGNRWAVIARLFPGRTDNAVKNHWHVIMARRCRER 108 (249)
Q Consensus 51 ~p~lkkg~WT~EED~~Llelv~~~G~~Ws~IA~~lpgRT~~~cknrW~~~lkr~~~~~ 108 (249)
.+..++++||+|||++|+++|.+||.+|..||..|||||..||+.||..++...+.+.
T Consensus 6 ~~~~kk~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~ 63 (126)
T 3osg_A 6 LKAAKKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYLAPSISHT 63 (126)
T ss_dssp -CBCSSCCCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHHHHTSTTSCCS
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHhhhcccccccc
Confidence 3567899999999999999999999999999999999999999999998886655443
No 49
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.27 E-value=7.3e-12 Score=93.69 Aligned_cols=48 Identities=25% Similarity=0.446 Sum_probs=44.3
Q ss_pred CCCCHHHHHHHHHHHHHhCC-chHHHhhh----CCCCCHHHHHHHHHHHHHHH
Q 025697 57 SPFTEEEEERLLASHRIHGN-RWAVIARL----FPGRTDNAVKNHWHVIMARR 104 (249)
Q Consensus 57 g~WT~EED~~Llelv~~~G~-~Ws~IA~~----lpgRT~~~cknrW~~~lkr~ 104 (249)
.+||.|||+.|+++|.+||. +|+.|++. |+|||+.+||+||+.+++..
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~ 53 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTA 53 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhc
Confidence 48999999999999999995 99999995 89999999999999988754
No 50
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.25 E-value=7.7e-12 Score=88.33 Aligned_cols=50 Identities=26% Similarity=0.480 Sum_probs=45.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCchHHHh---hhCCCCCHHHHHHHHHHHHHH
Q 025697 54 INRSPFTEEEEERLLASHRIHGNRWAVIA---RLFPGRTDNAVKNHWHVIMAR 103 (249)
Q Consensus 54 lkkg~WT~EED~~Llelv~~~G~~Ws~IA---~~lpgRT~~~cknrW~~~lkr 103 (249)
.++.+||+||++.|+++|.+||.+|+.|+ ..+++||..+++++|+.++++
T Consensus 6 ~~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~ 58 (62)
T 1x58_A 6 SGRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLISG 58 (62)
T ss_dssp CCSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHHTC
T ss_pred CCCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHHHhc
Confidence 46789999999999999999999999999 577899999999999888764
No 51
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.23 E-value=5.4e-12 Score=97.99 Aligned_cols=52 Identities=25% Similarity=0.429 Sum_probs=46.8
Q ss_pred CCCCCHHHHHHHHHHHHHhCC-chHHHhhhCCCCCHHHHHHHHHHHHHHHHhh
Q 025697 56 RSPFTEEEEERLLASHRIHGN-RWAVIARLFPGRTDNAVKNHWHVIMARRCRE 107 (249)
Q Consensus 56 kg~WT~EED~~Llelv~~~G~-~Ws~IA~~lpgRT~~~cknrW~~~lkr~~~~ 107 (249)
+++||+|||++|+++|.+||. +|..||..|||||+.||+.||..+|...+..
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~p~i~~ 53 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRT 53 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHSSSCCTT
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHHcccccc
Confidence 589999999999999999995 8999999999999999999998887655443
No 52
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.22 E-value=1.5e-11 Score=98.02 Aligned_cols=54 Identities=28% Similarity=0.453 Sum_probs=49.1
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHhCC-chHHHhhh----CCCCCHHHHHHHHHHHHHH
Q 025697 50 LDPRINRSPFTEEEEERLLASHRIHGN-RWAVIARL----FPGRTDNAVKNHWHVIMAR 103 (249)
Q Consensus 50 L~p~lkkg~WT~EED~~Llelv~~~G~-~Ws~IA~~----lpgRT~~~cknrW~~~lkr 103 (249)
+.+..++++||.|||+.|+++|.+||. +|+.|++. |+|||+.+||+||+.+++.
T Consensus 11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~ 69 (121)
T 2juh_A 11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHT 69 (121)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhh
Confidence 456678899999999999999999995 99999997 5899999999999999873
No 53
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.22 E-value=1.8e-11 Score=95.35 Aligned_cols=52 Identities=27% Similarity=0.442 Sum_probs=47.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCC-chHHHhhhC----CCCCHHHHHHHHHHHHHH
Q 025697 52 PRINRSPFTEEEEERLLASHRIHGN-RWAVIARLF----PGRTDNAVKNHWHVIMAR 103 (249)
Q Consensus 52 p~lkkg~WT~EED~~Llelv~~~G~-~Ws~IA~~l----pgRT~~~cknrW~~~lkr 103 (249)
+..++++||.|||+.|+++|.+||. +|+.|++.+ +|||+.+||+||+.+++.
T Consensus 9 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~ 65 (105)
T 2aje_A 9 QRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHT 65 (105)
T ss_dssp CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhh
Confidence 4567899999999999999999995 999999965 899999999999988864
No 54
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.21 E-value=3e-11 Score=92.19 Aligned_cols=50 Identities=26% Similarity=0.557 Sum_probs=45.3
Q ss_pred CCCCCCHHHHHHHHHHHHHhC----CchHHHhhhCCCCCHHHHHHHHHHHHHHH
Q 025697 55 NRSPFTEEEEERLLASHRIHG----NRWAVIARLFPGRTDNAVKNHWHVIMARR 104 (249)
Q Consensus 55 kkg~WT~EED~~Llelv~~~G----~~Ws~IA~~lpgRT~~~cknrW~~~lkr~ 104 (249)
.+++||.|||++|++++.+|| .+|..||..|||||..+|++||..++...
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv 60 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDI 60 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 467999999999999999996 68999999999999999999999887654
No 55
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.20 E-value=6.5e-12 Score=110.16 Aligned_cols=55 Identities=29% Similarity=0.577 Sum_probs=48.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCc------hHHHhhhCCCCCHHHHHHHHHHHHHHHHh
Q 025697 52 PRINRSPFTEEEEERLLASHRIHGNR------WAVIARLFPGRTDNAVKNHWHVIMARRCR 106 (249)
Q Consensus 52 p~lkkg~WT~EED~~Llelv~~~G~~------Ws~IA~~lpgRT~~~cknrW~~~lkr~~~ 106 (249)
+.+++++||+|||++|+++|.++|++ |..||++|||||+++||+||+.+|++++.
T Consensus 4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln 64 (246)
T 1ign_A 4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLE 64 (246)
T ss_dssp ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhcc
Confidence 35788999999999999999999875 99999999999999999999999988765
No 56
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.18 E-value=9.4e-12 Score=94.99 Aligned_cols=48 Identities=17% Similarity=0.491 Sum_probs=43.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHC---CCChhHhhHHhcCCChhhhhhhhhccc
Q 025697 3 TRGHWRPAEDEKLRELVERYG---PHNWNAIAEKLQGRSGKSCRLRWFNQL 50 (249)
Q Consensus 3 ~Kg~WT~EED~~L~~~V~~~G---~~~W~~IA~~l~~Rt~~qcr~Rw~~~L 50 (249)
.+++||+|||++|.+++++|| +..|..||+.|||||..+|+.||..++
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~ 57 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILV 57 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 478999999999999999997 457999999999999999999998874
No 57
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.14 E-value=7.4e-11 Score=94.11 Aligned_cols=53 Identities=28% Similarity=0.429 Sum_probs=46.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCC-chHHHhhh----CCCCCHHHHHHHHHHHHHHH
Q 025697 52 PRINRSPFTEEEEERLLASHRIHGN-RWAVIARL----FPGRTDNAVKNHWHVIMARR 104 (249)
Q Consensus 52 p~lkkg~WT~EED~~Llelv~~~G~-~Ws~IA~~----lpgRT~~~cknrW~~~lkr~ 104 (249)
...++++||.|||+.|+++|.+||. +|+.|++. |++||..+||+||+.+++..
T Consensus 27 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~ 84 (122)
T 2roh_A 27 QRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTA 84 (122)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc
Confidence 3457889999999999999999995 99999986 48999999999999988643
No 58
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.02 E-value=4.7e-10 Score=78.91 Aligned_cols=47 Identities=13% Similarity=0.128 Sum_probs=43.5
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCchHHHhhhCCCCCHHHHHHHHHHHH
Q 025697 55 NRSPFTEEEEERLLASHRIHGNRWAVIARLFPGRTDNAVKNHWHVIM 101 (249)
Q Consensus 55 kkg~WT~EED~~Llelv~~~G~~Ws~IA~~lpgRT~~~cknrW~~~l 101 (249)
...+||+||++++++++.+||.+|..||..||+||..+|..+|+...
T Consensus 11 ~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~~K 57 (61)
T 2eqr_A 11 FMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLTK 57 (61)
T ss_dssp CCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHHHT
T ss_pred cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhc
Confidence 45799999999999999999999999999999999999999997653
No 59
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.99 E-value=2.2e-10 Score=80.91 Aligned_cols=48 Identities=21% Similarity=0.296 Sum_probs=43.9
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCChhHhhH---HhcCCChhhhhhhhhcccC
Q 025697 3 TRGHWRPAEDEKLRELVERYGPHNWNAIAE---KLQGRSGKSCRLRWFNQLD 51 (249)
Q Consensus 3 ~Kg~WT~EED~~L~~~V~~~G~~~W~~IA~---~l~~Rt~~qcr~Rw~~~L~ 51 (249)
.|++||+|||+.|+++|++||. +|..|+. .+++||.-++++||+++..
T Consensus 7 ~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f~~~RT~VdLKdk~r~L~k 57 (62)
T 1x58_A 7 GRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQKGRRAVDLAHKYHRLIS 57 (62)
T ss_dssp CSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCTTCCHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCCccCcccchHHHHHHHHHh
Confidence 6889999999999999999997 8999995 5689999999999998765
No 60
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=98.98 E-value=1e-09 Score=83.49 Aligned_cols=65 Identities=20% Similarity=0.256 Sum_probs=59.0
Q ss_pred hhhhhhhhcccCCCCCCCCCCHHHHHHHHHHHHHhCCchHHHhhhC-----CCCCHHHHHHHHHHHHHHHHhhh
Q 025697 40 KSCRLRWFNQLDPRINRSPFTEEEEERLLASHRIHGNRWAVIARLF-----PGRTDNAVKNHWHVIMARRCRER 108 (249)
Q Consensus 40 ~qcr~Rw~~~L~p~lkkg~WT~EED~~Llelv~~~G~~Ws~IA~~l-----pgRT~~~cknrW~~~lkr~~~~~ 108 (249)
.=+.++|.++|.+ ++||.||+..|++|+++||.+|..|+..+ ++||..++|+||+.+.++.+..+
T Consensus 18 ~yt~eeY~~~L~~----~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~r 87 (93)
T 3hm5_A 18 VYSEQEYQLYLHD----DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR 87 (93)
T ss_dssp CCCHHHHHHHTCB----TTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred ccCHHHHHHHcCC----CCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 4577899999876 89999999999999999999999999988 58999999999999998877655
No 61
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.95 E-value=6.4e-10 Score=78.24 Aligned_cols=47 Identities=21% Similarity=0.333 Sum_probs=43.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCChhHhhHHhcCCChhhhhhhhhccc
Q 025697 3 TRGHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQL 50 (249)
Q Consensus 3 ~Kg~WT~EED~~L~~~V~~~G~~~W~~IA~~l~~Rt~~qcr~Rw~~~L 50 (249)
..++||+||++++.+++.+|| .+|..||..||+||..+|..+|....
T Consensus 11 ~~~~WT~eE~~~F~~~~~~~g-k~w~~Ia~~l~~rt~~~~v~~Yy~~K 57 (61)
T 2eqr_A 11 FMNVWTDHEKEIFKDKFIQHP-KNFGLIASYLERKSVPDCVLYYYLTK 57 (61)
T ss_dssp CCCSCCHHHHHHHHHHHHHST-TCHHHHHHHCTTSCHHHHHHHHHHHT
T ss_pred cCCCCCHHHHHHHHHHHHHhC-CCHHHHHHHcCCCCHHHHHHHHHHhc
Confidence 458999999999999999999 57999999999999999999997653
No 62
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.83 E-value=3.9e-09 Score=91.91 Aligned_cols=77 Identities=16% Similarity=0.126 Sum_probs=55.7
Q ss_pred ChhHhhHHhcCCChhhhhhhhhcccCCCCCCCCCCHHHHHHHHHHHHHhCCchHHHhhhCCCCCHHHHHHHHHHHHHH
Q 025697 26 NWNAIAEKLQGRSGKSCRLRWFNQLDPRINRSPFTEEEEERLLASHRIHGNRWAVIARLFPGRTDNAVKNHWHVIMAR 103 (249)
Q Consensus 26 ~W~~IA~~l~~Rt~~qcr~Rw~~~L~p~lkkg~WT~EED~~Llelv~~~G~~Ws~IA~~lpgRT~~~cknrW~~~lkr 103 (249)
+|..+-..|...+...+. +++.--......++||+||..++++++.+||++|..||+.|++||..||+++|+...++
T Consensus 104 ~~kQ~~~~L~~~~~~~Ie-~~R~pe~~~k~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kKR 180 (235)
T 2iw5_B 104 NIKQTNSALKEKLDGGIE-PYRLPEVIQKCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR 180 (235)
T ss_dssp HHHHHHHHHHHHSTTTTG-GGCCCCCCCCCCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHhhcc-cccCCCCCCccCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 466665555444432222 33321111234569999999999999999999999999999999999999999866543
No 63
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.82 E-value=6.9e-09 Score=75.47 Aligned_cols=50 Identities=24% Similarity=0.300 Sum_probs=44.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhC----CchHHHhhhCCCCCHHHHHHHHHHHHHH
Q 025697 53 RINRSPFTEEEEERLLASHRIHG----NRWAVIARLFPGRTDNAVKNHWHVIMAR 103 (249)
Q Consensus 53 ~lkkg~WT~EED~~Llelv~~~G----~~Ws~IA~~lpgRT~~~cknrW~~~lkr 103 (249)
..+.++||.||+++|.+++.+|+ .+|..||..+ |||..+|+.||+.+...
T Consensus 5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d 58 (72)
T 2cqq_A 5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDS 58 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHS
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHh
Confidence 35677999999999999999997 5799999998 99999999999877543
No 64
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.80 E-value=2.8e-09 Score=77.55 Aligned_cols=49 Identities=20% Similarity=0.341 Sum_probs=43.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCC---CChhHhhHHhcCCChhhhhhhhhcccC
Q 025697 2 CTRGHWRPAEDEKLRELVERYGP---HNWNAIAEKLQGRSGKSCRLRWFNQLD 51 (249)
Q Consensus 2 ~~Kg~WT~EED~~L~~~V~~~G~---~~W~~IA~~l~~Rt~~qcr~Rw~~~L~ 51 (249)
.+++.||.|||++|.+++++|+. ..|.+||+.+ |||..+|+.||..+..
T Consensus 6 ~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~ 57 (72)
T 2cqq_A 6 SGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKD 57 (72)
T ss_dssp CCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHH
Confidence 35789999999999999999983 4699999998 8999999999987654
No 65
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=98.69 E-value=7.6e-09 Score=99.03 Aligned_cols=44 Identities=20% Similarity=0.261 Sum_probs=41.3
Q ss_pred CCCCHHHHHHHHHHHHHhCCchHHHhhhCCCCCHHHHHHHHHHH
Q 025697 57 SPFTEEEEERLLASHRIHGNRWAVIARLFPGRTDNAVKNHWHVI 100 (249)
Q Consensus 57 g~WT~EED~~Llelv~~~G~~Ws~IA~~lpgRT~~~cknrW~~~ 100 (249)
.+||.||-.++++++.+||.+|..||+.+++||..||+++|...
T Consensus 381 ~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~ 424 (482)
T 2xag_B 381 ARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNY 424 (482)
T ss_dssp SCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHH
Confidence 48999999999999999999999999999999999999998643
No 66
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.69 E-value=1.4e-08 Score=74.04 Aligned_cols=51 Identities=18% Similarity=0.357 Sum_probs=45.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCC---CChhHhhHHhcCCChhhhhhhhhcccCC
Q 025697 2 CTRGHWRPAEDEKLRELVERYGP---HNWNAIAEKLQGRSGKSCRLRWFNQLDP 52 (249)
Q Consensus 2 ~~Kg~WT~EED~~L~~~V~~~G~---~~W~~IA~~l~~Rt~~qcr~Rw~~~L~p 52 (249)
...+.||.+|+++|..+++.|+. .+|.+||..||+||..+|+.||..++..
T Consensus 6 ~~~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~~ 59 (73)
T 1wgx_A 6 SGDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPRG 59 (73)
T ss_dssp CSSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSS
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHhc
Confidence 45678999999999999999975 4699999999999999999999987654
No 67
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.57 E-value=4.8e-08 Score=85.02 Aligned_cols=48 Identities=17% Similarity=0.350 Sum_probs=44.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCChhHhhHHhcCCChhhhhhhhhcccC
Q 025697 3 TRGHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLD 51 (249)
Q Consensus 3 ~Kg~WT~EED~~L~~~V~~~G~~~W~~IA~~l~~Rt~~qcr~Rw~~~L~ 51 (249)
..++||+||++++++++.+|| .+|..||+.|++||..||+.+|+++.+
T Consensus 132 ~s~~WTeEE~~lFleAl~kYG-KDW~~IAk~VgTKT~~QcKnfY~~~kK 179 (235)
T 2iw5_B 132 CNARWTTEEQLLAVQAIRKYG-RDFQAISDVIGNKSVVQVKNFFVNYRR 179 (235)
T ss_dssp CCSSCCHHHHHHHHHHHHHHS-SCHHHHHHHHSSCCHHHHHHHHHHTTT
T ss_pred cCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 357999999999999999999 679999999999999999999998764
No 68
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.55 E-value=8.6e-08 Score=69.82 Aligned_cols=46 Identities=13% Similarity=0.231 Sum_probs=41.9
Q ss_pred CCCCCCHHHHHHHHHHHHHhC----CchHHHhhhCCCCCHHHHHHHHHHH
Q 025697 55 NRSPFTEEEEERLLASHRIHG----NRWAVIARLFPGRTDNAVKNHWHVI 100 (249)
Q Consensus 55 kkg~WT~EED~~Llelv~~~G----~~Ws~IA~~lpgRT~~~cknrW~~~ 100 (249)
....||.+|+.+|.+++..|+ .+|..||..|||||..+|+.||..+
T Consensus 7 ~~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l 56 (73)
T 1wgx_A 7 GDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMEN 56 (73)
T ss_dssp SSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHS
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 346899999999999999998 4799999999999999999999765
No 69
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.51 E-value=4.7e-08 Score=68.39 Aligned_cols=48 Identities=25% Similarity=0.390 Sum_probs=43.2
Q ss_pred CCCCCHHHHHHHHHHHHHH--------CCCChhHhhH-HhcCCChhhhhhhhhcccC
Q 025697 4 RGHWRPAEDEKLRELVERY--------GPHNWNAIAE-KLQGRSGKSCRLRWFNQLD 51 (249)
Q Consensus 4 Kg~WT~EED~~L~~~V~~~--------G~~~W~~IA~-~l~~Rt~~qcr~Rw~~~L~ 51 (249)
|.+||+|||..|+.+|..| |..-|..+|+ .+|++|-.+||+||.++|.
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence 6789999999999999999 4335999999 7999999999999998875
No 70
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=98.41 E-value=1.4e-06 Score=79.05 Aligned_cols=105 Identities=17% Similarity=0.239 Sum_probs=82.9
Q ss_pred CCCCHHHHHHHHHHHHHHCCCChhHhhHHhcCCChhhhhhhhh----cc--c----------------------------
Q 025697 5 GHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWF----NQ--L---------------------------- 50 (249)
Q Consensus 5 g~WT~EED~~L~~~V~~~G~~~W~~IA~~l~~Rt~~qcr~Rw~----~~--L---------------------------- 50 (249)
+.||..+...++.++.+||..+|..||..|+|+|...++..+. ++ +
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~~~~~~l~ 190 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWERCTELQDIERIMGQIERGEGKIQRRLSIKKALD 190 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHHHGGGCTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4699999999999999999989999999999999877643221 11 0
Q ss_pred ----------------CCCCCCCCCCHHHHHHHHHHHHHhC----CchHHHhh------------hCCCCCHHHHHHHHH
Q 025697 51 ----------------DPRINRSPFTEEEEERLLASHRIHG----NRWAVIAR------------LFPGRTDNAVKNHWH 98 (249)
Q Consensus 51 ----------------~p~lkkg~WT~EED~~Llelv~~~G----~~Ws~IA~------------~lpgRT~~~cknrW~ 98 (249)
.+..+...||++||..|+-++.+|| +.|..|.. .+-.||+.+|..|..
T Consensus 191 ~Ki~~~~~P~~~L~i~y~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc~ 270 (304)
T 1ofc_X 191 QKMSRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCN 270 (304)
T ss_dssp HHHHTCSSHHHHCCCCCTTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHH
T ss_pred HHHHHhcCcHHHhccccCCCCCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHH
Confidence 1222445899999999999999999 47999962 345799999999999
Q ss_pred HHHHHHHhhhh
Q 025697 99 VIMARRCRERS 109 (249)
Q Consensus 99 ~~lkr~~~~~~ 109 (249)
++++-..+.-.
T Consensus 271 tLi~~iekE~~ 281 (304)
T 1ofc_X 271 TLITLIERENI 281 (304)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 99976655433
No 71
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.28 E-value=9.3e-07 Score=61.71 Aligned_cols=46 Identities=17% Similarity=0.414 Sum_probs=40.7
Q ss_pred CCCCCHHHHHHHHHHHHHh--------CC-chHHHhh-hCCCCCHHHHHHHHHHHH
Q 025697 56 RSPFTEEEEERLLASHRIH--------GN-RWAVIAR-LFPGRTDNAVKNHWHVIM 101 (249)
Q Consensus 56 kg~WT~EED~~Llelv~~~--------G~-~Ws~IA~-~lpgRT~~~cknrW~~~l 101 (249)
+.+||.|||..|++.|.+| |+ -|..+|+ .+|++|-.+||+||...|
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l 57 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHL 57 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHc
Confidence 5689999999999999999 43 3999999 899999999999996544
No 72
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.27 E-value=1.9e-06 Score=60.71 Aligned_cols=49 Identities=18% Similarity=0.287 Sum_probs=44.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCchHHHhh-hCCCCCHHHHHHHHHHH
Q 025697 52 PRINRSPFTEEEEERLLASHRIHGNRWAVIAR-LFPGRTDNAVKNHWHVI 100 (249)
Q Consensus 52 p~lkkg~WT~EED~~Llelv~~~G~~Ws~IA~-~lpgRT~~~cknrW~~~ 100 (249)
|.++..+||+||-.+..+++.+||.+|..|++ .||+||..+|...|+..
T Consensus 5 p~~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~w 54 (63)
T 2yqk_A 5 SSGIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYYYW 54 (63)
T ss_dssp CCCCCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHHHH
T ss_pred CCcCCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHhcc
Confidence 66778899999999999999999999999999 59999999999988644
No 73
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=98.20 E-value=2.9e-07 Score=66.85 Aligned_cols=44 Identities=14% Similarity=0.355 Sum_probs=39.1
Q ss_pred CCCCCHHHHHHHHHHHHHHCCC---ChhHhhHHhcCCChhhhhhhhh
Q 025697 4 RGHWRPAEDEKLRELVERYGPH---NWNAIAEKLQGRSGKSCRLRWF 47 (249)
Q Consensus 4 Kg~WT~EED~~L~~~V~~~G~~---~W~~IA~~l~~Rt~~qcr~Rw~ 47 (249)
.+.||.+|+++|..+++.|+.. .|.+||+.|||||..+|+.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 3579999999999999999753 6999999999999999999984
No 74
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=98.06 E-value=1e-05 Score=61.36 Aligned_cols=61 Identities=21% Similarity=0.306 Sum_probs=51.6
Q ss_pred hhhcccCCCCCCCCCCHHHHHHHHHHHHHhCCchHHHhhhCC-----CCCHHHHHHHHHHHHHHHHhhhh
Q 025697 45 RWFNQLDPRINRSPFTEEEEERLLASHRIHGNRWAVIARLFP-----GRTDNAVKNHWHVIMARRCRERS 109 (249)
Q Consensus 45 Rw~~~L~p~lkkg~WT~EED~~Llelv~~~G~~Ws~IA~~lp-----gRT~~~cknrW~~~lkr~~~~~~ 109 (249)
.|..+|. ...||.||...|++|+++|+.+|..|+..+. .||..++|.||+.+.++.+..+.
T Consensus 23 EY~~~L~----~~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~r~ 88 (93)
T 4iej_A 23 EYQLYLH----DDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVRA 88 (93)
T ss_dssp HHHHHTC----BTTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHhC----CCCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHhhC
Confidence 4445554 3689999999999999999999999998764 79999999999999988876553
No 75
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=98.03 E-value=7.5e-06 Score=61.63 Aligned_cols=46 Identities=20% Similarity=0.351 Sum_probs=42.9
Q ss_pred CCCHHHHHHHHHHHHHhCC---chHHHhhhCCCCCHHHHHHHHHHHHHH
Q 025697 58 PFTEEEEERLLASHRIHGN---RWAVIARLFPGRTDNAVKNHWHVIMAR 103 (249)
Q Consensus 58 ~WT~EED~~Llelv~~~G~---~Ws~IA~~lpgRT~~~cknrW~~~lkr 103 (249)
-||.|||..||....+.|. .|+.||+.|.+|++++|++||+.+++-
T Consensus 35 lWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~L 83 (95)
T 1ug2_A 35 LWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQL 83 (95)
T ss_dssp SSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHH
T ss_pred EeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 6999999999999999986 799999999999999999999988753
No 76
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=98.02 E-value=9.4e-07 Score=64.16 Aligned_cols=43 Identities=26% Similarity=0.482 Sum_probs=38.5
Q ss_pred CCCCCHHHHHHHHHHHHHhCC----chHHHhhhCCCCCHHHHHHHHH
Q 025697 56 RSPFTEEEEERLLASHRIHGN----RWAVIARLFPGRTDNAVKNHWH 98 (249)
Q Consensus 56 kg~WT~EED~~Llelv~~~G~----~Ws~IA~~lpgRT~~~cknrW~ 98 (249)
.++||.+|+++|..++..|+. +|.+||..|||||..+|+.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 458999999999999999984 7999999999999999999873
No 77
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.97 E-value=7.1e-06 Score=57.80 Aligned_cols=46 Identities=15% Similarity=0.282 Sum_probs=41.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCChhHhhH-HhcCCChhhhhhhhhcc
Q 025697 3 TRGHWRPAEDEKLRELVERYGPHNWNAIAE-KLQGRSGKSCRLRWFNQ 49 (249)
Q Consensus 3 ~Kg~WT~EED~~L~~~V~~~G~~~W~~IA~-~l~~Rt~~qcr~Rw~~~ 49 (249)
+...||+||-++..+++.+|| .+|..|++ .|++|+..+|...|...
T Consensus 8 ~~~~WT~eE~~~Fe~~l~~yG-Kdf~~I~~~~v~~Kt~~~~v~fYY~w 54 (63)
T 2yqk_A 8 IEKCWTEDEVKRFVKGLRQYG-KNFFRIRKELLPNKETGELITFYYYW 54 (63)
T ss_dssp CCCSCCHHHHHHHHHHHHHTC-SCHHHHHHHSCTTSCHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHhC-ccHHHHHHHHcCCCcHHHHHHHHhcc
Confidence 457899999999999999999 47999999 48999999999888653
No 78
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.84 E-value=3.4e-05 Score=55.42 Aligned_cols=44 Identities=9% Similarity=0.163 Sum_probs=40.9
Q ss_pred CCCCCHHHHHHHHHHHHHhCCchHHHhh-hCCCCCHHHHHHHHHH
Q 025697 56 RSPFTEEEEERLLASHRIHGNRWAVIAR-LFPGRTDNAVKNHWHV 99 (249)
Q Consensus 56 kg~WT~EED~~Llelv~~~G~~Ws~IA~-~lpgRT~~~cknrW~~ 99 (249)
..+||+||-.+..+++.+||.+|..|++ .||+||..+|...|+.
T Consensus 8 ~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~ 52 (70)
T 2crg_A 8 MEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYM 52 (70)
T ss_dssp SCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHHh
Confidence 4589999999999999999999999999 5999999999999874
No 79
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=97.05 E-value=2.3e-06 Score=61.15 Aligned_cols=45 Identities=18% Similarity=0.352 Sum_probs=41.7
Q ss_pred CCCHHHHHHHHHHHHHhCC---chHHHhhhCCCCCHHHHHHHHHHHHHH
Q 025697 58 PFTEEEEERLLASHRIHGN---RWAVIARLFPGRTDNAVKNHWHVIMAR 103 (249)
Q Consensus 58 ~WT~EED~~Llelv~~~G~---~Ws~IA~~lpgRT~~~cknrW~~~lkr 103 (249)
-||.|||..|+..+.+.|. .|+.||..| +||++||.+||..+++-
T Consensus 16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~L 63 (70)
T 2lr8_A 16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMKL 63 (70)
Confidence 6999999999999999996 799999999 99999999999888753
No 80
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=97.78 E-value=1.9e-05 Score=75.68 Aligned_cols=45 Identities=18% Similarity=0.395 Sum_probs=42.2
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCChhHhhHHhcCCChhhhhhhhhcc
Q 025697 4 RGHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQ 49 (249)
Q Consensus 4 Kg~WT~EED~~L~~~V~~~G~~~W~~IA~~l~~Rt~~qcr~Rw~~~ 49 (249)
..+||++|-.++++++.+|| .+|..||..|++||..||+.+|.++
T Consensus 380 ~~~WT~eE~~~f~~al~~yG-kdw~~IA~~VgTKT~~Qvk~fy~~~ 424 (482)
T 2xag_B 380 NARWTTEEQLLAVQAIRKYG-RDFQAISDVIGNKSVVQVKNFFVNY 424 (482)
T ss_dssp CSCCCHHHHHHHHHHHHHHT-TCHHHHHHHHSSCCHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHC-cCHHHHHHHhCCCCHHHHHHHHHHH
Confidence 57899999999999999999 5899999999999999999999765
No 81
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=97.78 E-value=4.7e-05 Score=57.76 Aligned_cols=45 Identities=16% Similarity=0.223 Sum_probs=41.7
Q ss_pred CCCCCHHHHHHHHHHHHHhCCchHHHhhhCCCCCHHHHHHHHHHH
Q 025697 56 RSPFTEEEEERLLASHRIHGNRWAVIARLFPGRTDNAVKNHWHVI 100 (249)
Q Consensus 56 kg~WT~EED~~Llelv~~~G~~Ws~IA~~lpgRT~~~cknrW~~~ 100 (249)
...||+||..++.++...||.+|..||..||+||..+|..+|+..
T Consensus 43 ~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY~~ 87 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLT 87 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHhcc
Confidence 458999999999999999999999999999999999999988644
No 82
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.74 E-value=2.4e-05 Score=56.20 Aligned_cols=44 Identities=25% Similarity=0.386 Sum_probs=39.8
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCChhHhhH-HhcCCChhhhhhhhhc
Q 025697 4 RGHWRPAEDEKLRELVERYGPHNWNAIAE-KLQGRSGKSCRLRWFN 48 (249)
Q Consensus 4 Kg~WT~EED~~L~~~V~~~G~~~W~~IA~-~l~~Rt~~qcr~Rw~~ 48 (249)
...||++|-++..+++.+||. +|..|++ .|++|+..+|...|..
T Consensus 8 ~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~~Kt~~~~v~fYY~ 52 (70)
T 2crg_A 8 MEEWSASEACLFEEALEKYGK-DFNDIRQDFLPWKSLTSIIEYYYM 52 (70)
T ss_dssp SCCCCHHHHHHHHHHHHHTCS-CHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCc-cHHHHHHHHcCCCCHHHHHHHHHh
Confidence 357999999999999999994 7999999 5899999999988864
No 83
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=97.70 E-value=2.8e-05 Score=59.02 Aligned_cols=44 Identities=25% Similarity=0.428 Sum_probs=40.4
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCChhHhhHHhcCCChhhhhhhhhc
Q 025697 4 RGHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFN 48 (249)
Q Consensus 4 Kg~WT~EED~~L~~~V~~~G~~~W~~IA~~l~~Rt~~qcr~Rw~~ 48 (249)
...||+||.+++.+++..|| .+|..||..||+||..+|...|..
T Consensus 43 ~~~WT~eE~~~F~~~~~~~g-K~F~~Ia~~l~~Kt~~~cV~~YY~ 86 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHP-KNFGLIASFLERKTVAECVLYYYL 86 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHST-TCHHHHHHTCTTCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcC-CCHHHHHHHcCCCCHHHHHHHHhc
Confidence 36799999999999999999 579999999999999999988864
No 84
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=97.70 E-value=2.8e-05 Score=59.03 Aligned_cols=47 Identities=21% Similarity=0.441 Sum_probs=42.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCChhHhhHHh-----cCCChhhhhhhhhccc
Q 025697 3 TRGHWRPAEDEKLRELVERYGPHNWNAIAEKL-----QGRSGKSCRLRWFNQL 50 (249)
Q Consensus 3 ~Kg~WT~EED~~L~~~V~~~G~~~W~~IA~~l-----~~Rt~~qcr~Rw~~~L 50 (249)
+-++||.||++.|++++.+||. .|..|+..+ ++||..+++.||..+.
T Consensus 29 ~~~~WTkEETd~Lf~L~~~fdl-RW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~ 80 (93)
T 3hm5_A 29 HDDAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHIC 80 (93)
T ss_dssp CBTTBCHHHHHHHHHHHHHTTT-CHHHHHHHSCTTTSCCCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCC-CeeeehhhhccCCCCCCCHHHHHHHHHHHH
Confidence 3479999999999999999994 699999999 4899999999998754
No 85
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=97.46 E-value=0.0002 Score=60.89 Aligned_cols=101 Identities=16% Similarity=0.176 Sum_probs=70.0
Q ss_pred CCCCCHHHHHHHHHHHHHHC--CCChhHhhHH--hcCCChhhhhhhhhcc-------c----------------------
Q 025697 4 RGHWRPAEDEKLRELVERYG--PHNWNAIAEK--LQGRSGKSCRLRWFNQ-------L---------------------- 50 (249)
Q Consensus 4 Kg~WT~EED~~L~~~V~~~G--~~~W~~IA~~--l~~Rt~~qcr~Rw~~~-------L---------------------- 50 (249)
...||..|-..|+.++.+|| ...|..|+.. |.+++...+...+... +
T Consensus 7 ~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (211)
T 4b4c_A 7 IKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNGCIKALKDSSSGTERTGGRLGKVKGPTF 86 (211)
T ss_dssp -CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHHHHHHHC-----------------CCEE
T ss_pred CCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccchhh
Confidence 46799999999999999999 4679999875 5677764443211110 0
Q ss_pred --------------------------------------C----CCCCCCCCCHHHHHHHHHHHHHhC-CchHHHhh--hC
Q 025697 51 --------------------------------------D----PRINRSPFTEEEEERLLASHRIHG-NRWAVIAR--LF 85 (249)
Q Consensus 51 --------------------------------------~----p~lkkg~WT~EED~~Llelv~~~G-~~Ws~IA~--~l 85 (249)
. +......||.+||..|+-.+.+|| ++|..|.. .|
T Consensus 87 ~~~~v~~nA~~il~R~~~l~~L~~~v~~~~~~~~~~~i~~~~~~~~~~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D~~l 166 (211)
T 4b4c_A 87 RISGVQVNAKLVISHEEELIPLHKSIPSDPEERKQYTIPCHTKAAHFDIDWGKEDDSNLLIGIYEYGYGSWEMIKMDPDL 166 (211)
T ss_dssp EETTEEEEHHHHHHHHHHHHHHHHHSCSSHHHHHTCCCCSCCCCCCSSSCCCHHHHHHHHHHHHHHCTTCHHHHHHCSSS
T ss_pred hhcccchhHHHHHHhHHHHHHHHHHHHhchhhHHHcCcCCCCCCCCCCCCccHHHHHHHHHHHHHHCcCcHHHHHhChhc
Confidence 0 000122599999999999999999 99999964 21
Q ss_pred --C--------CC--CHHHHHHHHHHHHHHH
Q 025697 86 --P--------GR--TDNAVKNHWHVIMARR 104 (249)
Q Consensus 86 --p--------gR--T~~~cknrW~~~lkr~ 104 (249)
. .+ +...+..|-..+++-.
T Consensus 167 ~~~~k~~~~~~~k~p~a~~L~rR~~~Ll~~l 197 (211)
T 4b4c_A 167 SLTHKILPDDPDKKPQAKQLQTRADYLIKLL 197 (211)
T ss_dssp SCTTTSSCSSTTSSCCHHHHHHHHHHHHHHH
T ss_pred CccccccccccccCCChHHHHHHHHHHHHHH
Confidence 1 23 4556888877776643
No 86
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=97.23 E-value=0.0013 Score=61.19 Aligned_cols=102 Identities=22% Similarity=0.367 Sum_probs=80.0
Q ss_pred CCCCHHHHHHHHHHHHHHCCCChhHhhHHhc-CCChhhhhhhhhccc---------------------------------
Q 025697 5 GHWRPAEDEKLRELVERYGPHNWNAIAEKLQ-GRSGKSCRLRWFNQL--------------------------------- 50 (249)
Q Consensus 5 g~WT~EED~~L~~~V~~~G~~~W~~IA~~l~-~Rt~~qcr~Rw~~~L--------------------------------- 50 (249)
+.||.-+=..++.++++||..+-..||..|. ++|...++ +|...+
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~-~Y~~vFw~Ry~Ei~d~erii~~IEkgE~ki~r~~~~~~~ 202 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVR-AYAKAFWSNIERIEDYEKYLKIIENEEEKIKRVKMQQEA 202 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHH-HHHHHHHHTCSSCSCCTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHH-HHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4699999999999999999889999999997 88887665 222211
Q ss_pred -------------------CCC-CCCCCCCHHHHHHHHHHHHHhC----CchHHHhhh------------CCCCCHHHHH
Q 025697 51 -------------------DPR-INRSPFTEEEEERLLASHRIHG----NRWAVIARL------------FPGRTDNAVK 94 (249)
Q Consensus 51 -------------------~p~-lkkg~WT~EED~~Llelv~~~G----~~Ws~IA~~------------lpgRT~~~ck 94 (249)
.+. .+...||++||..||-++.+|| +.|..|-.. |-.||+..|.
T Consensus 203 L~~Ki~~y~~P~~~L~i~y~~~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~ 282 (374)
T 2y9y_A 203 LRRKLSEYKNPFFDLKLKHPPSSNNKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELA 282 (374)
T ss_dssp HHHHHTTCSSHHHHCCCSSCCCCSSCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHH
T ss_pred HHHHHHHccCCHHHceeccCCCCCCCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHH
Confidence 111 1345799999999999999998 569999432 3579999999
Q ss_pred HHHHHHHHHHHhh
Q 025697 95 NHWHVIMARRCRE 107 (249)
Q Consensus 95 nrW~~~lkr~~~~ 107 (249)
.|...+++-..+.
T Consensus 283 rRc~tLi~~IeKE 295 (374)
T 2y9y_A 283 RRGNTLLQCLEKE 295 (374)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHH
Confidence 9999998765544
No 87
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.20 E-value=0.00026 Score=53.28 Aligned_cols=45 Identities=16% Similarity=0.403 Sum_probs=40.4
Q ss_pred CCCHHHHHHHHHHHHHHCC--CChhHhhHHhcCCChhhhhhhhhccc
Q 025697 6 HWRPAEDEKLRELVERYGP--HNWNAIAEKLQGRSGKSCRLRWFNQL 50 (249)
Q Consensus 6 ~WT~EED~~L~~~V~~~G~--~~W~~IA~~l~~Rt~~qcr~Rw~~~L 50 (249)
.||.|||..|+...++.|. ..|..||+.|++|++.|+.+|++.++
T Consensus 35 lWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm 81 (95)
T 1ug2_A 35 LWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELM 81 (95)
T ss_dssp SSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHH
T ss_pred EeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 4999999999999999986 36999999999999999999997643
No 88
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=97.17 E-value=0.00015 Score=53.50 Aligned_cols=48 Identities=25% Similarity=0.469 Sum_probs=39.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHCC------C---ChhHhhHHhc----CCChhhhhhhhhccc
Q 025697 3 TRGHWRPAEDEKLRELVERYGP------H---NWNAIAEKLQ----GRSGKSCRLRWFNQL 50 (249)
Q Consensus 3 ~Kg~WT~EED~~L~~~V~~~G~------~---~W~~IA~~l~----~Rt~~qcr~Rw~~~L 50 (249)
....||.+|...|+++...... . -|..||..|. .||+.||+.+|.++.
T Consensus 3 R~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~ 63 (86)
T 2ebi_A 3 RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLL 63 (86)
T ss_dssp CSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 4578999999999999985311 1 4999999984 699999999998764
No 89
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=96.23 E-value=6.2e-05 Score=53.72 Aligned_cols=45 Identities=18% Similarity=0.384 Sum_probs=40.5
Q ss_pred CCCHHHHHHHHHHHHHHCC--CChhHhhHHhcCCChhhhhhhhhcccC
Q 025697 6 HWRPAEDEKLRELVERYGP--HNWNAIAEKLQGRSGKSCRLRWFNQLD 51 (249)
Q Consensus 6 ~WT~EED~~L~~~V~~~G~--~~W~~IA~~l~~Rt~~qcr~Rw~~~L~ 51 (249)
.||.|||..|+..+++.|+ .-|..||+.| +|++.|+..||..++.
T Consensus 16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~ 62 (70)
T 2lr8_A 16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMK 62 (70)
Confidence 4999999999999999986 2599999999 8999999999988654
No 90
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=97.14 E-value=0.0004 Score=51.19 Aligned_cols=51 Identities=14% Similarity=0.352 Sum_probs=41.4
Q ss_pred CCCCCHHHHHHHHHHHHHhCC----------chHHHhhhCC----CCCHHHHHHHHHHHHHHHHh
Q 025697 56 RSPFTEEEEERLLASHRIHGN----------RWAVIARLFP----GRTDNAVKNHWHVIMARRCR 106 (249)
Q Consensus 56 kg~WT~EED~~Llelv~~~G~----------~Ws~IA~~lp----gRT~~~cknrW~~~lkr~~~ 106 (249)
...||.+|-..||+++..+.. .|..||..|. .||+.||+.+|..+.+.-..
T Consensus 4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Yk~ 68 (86)
T 2ebi_A 4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEFKK 68 (86)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCS
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 468999999999999876431 5999998653 69999999999988766543
No 91
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=95.85 E-value=0.0062 Score=46.00 Aligned_cols=47 Identities=21% Similarity=0.440 Sum_probs=41.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCChhHhhHHhc-----CCChhhhhhhhhccc
Q 025697 3 TRGHWRPAEDEKLRELVERYGPHNWNAIAEKLQ-----GRSGKSCRLRWFNQL 50 (249)
Q Consensus 3 ~Kg~WT~EED~~L~~~V~~~G~~~W~~IA~~l~-----~Rt~~qcr~Rw~~~L 50 (249)
+-..||.||.+.|.+++..|+ ..|.-|+.... .||..+++.||..+.
T Consensus 29 ~~~~WT~eETd~LfdLc~~fd-lRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~ 80 (93)
T 4iej_A 29 HDDAWTKAETDHLFDLSRRFD-LRFVVIHDRYDHQQFKKRSVEDLKERYYHIC 80 (93)
T ss_dssp CBTTBCHHHHHHHHHHHHHTT-TCHHHHHHHCCTTTSCCCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcC-CCeEEEeeccccCCCCCCCHHHHHHHHHHHH
Confidence 346899999999999999999 56999999873 699999999998754
No 92
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=94.54 E-value=0.066 Score=48.44 Aligned_cols=49 Identities=18% Similarity=0.224 Sum_probs=44.0
Q ss_pred CCCCCHHHHHHHHHHHHHhC-CchHHHhhhCCCCCHHHHHHHHHHHHHHH
Q 025697 56 RSPFTEEEEERLLASHRIHG-NRWAVIARLFPGRTDNAVKNHWHVIMARR 104 (249)
Q Consensus 56 kg~WT~EED~~Llelv~~~G-~~Ws~IA~~lpgRT~~~cknrW~~~lkr~ 104 (249)
-+.||..|...++.++.+|| .+|..||..|+|+|...|+.+......+.
T Consensus 110 F~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw~ry 159 (304)
T 1ofc_X 110 FTAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWERC 159 (304)
T ss_dssp CTTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHHHG
T ss_pred hcccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHHHhH
Confidence 45799999999999999999 58999999999999999998887777655
No 93
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=94.06 E-value=0.089 Score=36.98 Aligned_cols=48 Identities=13% Similarity=0.102 Sum_probs=38.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCC--ChhHhhHHh--cCCChhhhhhhhhcc
Q 025697 2 CTRGHWRPAEDEKLRELVERYGPH--NWNAIAEKL--QGRSGKSCRLRWFNQ 49 (249)
Q Consensus 2 ~~Kg~WT~EED~~L~~~V~~~G~~--~W~~IA~~l--~~Rt~~qcr~Rw~~~ 49 (249)
..|-.||+|.-++++++|...|.. -+..|.+.| +|.|..+++.+.+.|
T Consensus 5 k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKY 56 (64)
T 1irz_A 5 KPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKF 56 (64)
T ss_dssp CSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred CCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 357789999999999999999943 278998887 578888888776543
No 94
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=93.94 E-value=0.3 Score=34.24 Aligned_cols=47 Identities=23% Similarity=0.183 Sum_probs=39.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCc---hHHHhhh--CCCCCHHHHHHHHHHH
Q 025697 54 INRSPFTEEEEERLLASHRIHGNR---WAVIARL--FPGRTDNAVKNHWHVI 100 (249)
Q Consensus 54 lkkg~WT~EED~~Llelv~~~G~~---Ws~IA~~--lpgRT~~~cknrW~~~ 100 (249)
..+-.||+|..+..+++|.++|.. +..|.+. ++|.|..+|+.|.+.+
T Consensus 5 k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKY 56 (64)
T 1irz_A 5 KPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKF 56 (64)
T ss_dssp CSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred CCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 345689999999999999999965 7888875 4589999999998655
No 95
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=93.04 E-value=0.066 Score=47.68 Aligned_cols=27 Identities=41% Similarity=0.716 Sum_probs=25.6
Q ss_pred CCCHHHHHHHHHHHHHHCCCChhHhhH
Q 025697 6 HWRPAEDEKLRELVERYGPHNWNAIAE 32 (249)
Q Consensus 6 ~WT~EED~~L~~~V~~~G~~~W~~IA~ 32 (249)
.|+.+||..|+-.|.+||.++|..|..
T Consensus 170 ~W~~~dD~~LLvGIykyGyG~We~Ir~ 196 (270)
T 2xb0_X 170 NWTKEEDEKLLIGVFKYGYGSWTQIRD 196 (270)
T ss_dssp CCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CcChHHHHHHHHHHHHHcCCcHHHHhc
Confidence 499999999999999999999999985
No 96
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=92.82 E-value=0.19 Score=42.22 Aligned_cols=52 Identities=19% Similarity=0.287 Sum_probs=42.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHhC---CchHHHhh--hCCCCCHHHHHHHHHHHHHHHH
Q 025697 54 INRSPFTEEEEERLLASHRIHG---NRWAVIAR--LFPGRTDNAVKNHWHVIMARRC 105 (249)
Q Consensus 54 lkkg~WT~EED~~Llelv~~~G---~~Ws~IA~--~lpgRT~~~cknrW~~~lkr~~ 105 (249)
-....||..|-..|+.++.+|| .+|..|+. .|.++|...++..+..++....
T Consensus 5 ~~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~c~ 61 (211)
T 4b4c_A 5 ENIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNGCI 61 (211)
T ss_dssp ---CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHHHHH
Confidence 3456899999999999999999 57999986 5889999999998877776543
No 97
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=84.36 E-value=0.96 Score=41.94 Aligned_cols=45 Identities=13% Similarity=0.250 Sum_probs=36.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHCC---CChhHhhHHh------------cCCChhhhhhhhh
Q 025697 3 TRGHWRPAEDEKLRELVERYGP---HNWNAIAEKL------------QGRSGKSCRLRWF 47 (249)
Q Consensus 3 ~Kg~WT~EED~~L~~~V~~~G~---~~W~~IA~~l------------~~Rt~~qcr~Rw~ 47 (249)
++..||.+||..|+-++.+||. ++|..|-..+ ..||+..+..|-.
T Consensus 227 k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~rRc~ 286 (374)
T 2y9y_A 227 NKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELARRGN 286 (374)
T ss_dssp SCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHH
Confidence 3567999999999999999998 8899997664 3477777766643
No 98
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=82.63 E-value=3.5 Score=36.49 Aligned_cols=51 Identities=12% Similarity=0.095 Sum_probs=44.9
Q ss_pred CCCCCHHHHHHHHHHHHHhC---CchHHHhh--hCCCCCHHHHHHHHHHHHHHHHh
Q 025697 56 RSPFTEEEEERLLASHRIHG---NRWAVIAR--LFPGRTDNAVKNHWHVIMARRCR 106 (249)
Q Consensus 56 kg~WT~EED~~Llelv~~~G---~~Ws~IA~--~lpgRT~~~cknrW~~~lkr~~~ 106 (249)
+++||+-|-..|+..+.+|| .+|..|+. .|+.++...++.-+..++.....
T Consensus 3 ~~~ltekEiR~l~Ra~~kfG~~~~R~e~I~~dA~L~~ks~~~i~~~~~~li~~c~~ 58 (270)
T 2xb0_X 3 LGSIGESEVRALYKAILKFGNLKEILDELIADGTLPVKSFEKYGETYDEMMEAAKD 58 (270)
T ss_dssp TCCCCHHHHHHHHHHHHHHSSCTTCHHHHHHTTSSCCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999 58999976 78899999999999888776554
No 99
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=62.81 E-value=6.8 Score=29.88 Aligned_cols=39 Identities=13% Similarity=0.244 Sum_probs=29.9
Q ss_pred HHHHHHHHhCC--------chHHHhhhCCCCCHHHHHHHHHHHHHHH
Q 025697 66 RLLASHRIHGN--------RWAVIARLFPGRTDNAVKNHWHVIMARR 104 (249)
Q Consensus 66 ~Llelv~~~G~--------~Ws~IA~~lpgRT~~~cknrW~~~lkr~ 104 (249)
.|..+|...|| .|..||..|.--....++..|..+|-.-
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~Lr~~Y~k~L~~y 99 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLPY 99 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHTSCCTTHHHHHHHHHHSHH
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhCCChHHHHHHHHHHHHHHH
Confidence 57788888886 6999999776444788999987776543
No 100
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=59.27 E-value=18 Score=23.68 Aligned_cols=41 Identities=12% Similarity=0.139 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHhCCchHHHhhhCCCCCHHHHHHHHHHHHHH
Q 025697 62 EEEERLLASHRIHGNRWAVIARLFPGRTDNAVKNHWHVIMAR 103 (249)
Q Consensus 62 EED~~Llelv~~~G~~Ws~IA~~lpgRT~~~cknrW~~~lkr 103 (249)
+.+..++.++-..|-.+..||..+ |-+...|+.+....+++
T Consensus 18 ~~~r~il~l~~~~g~s~~eIA~~l-gis~~tv~~~~~ra~~~ 58 (70)
T 2o8x_A 18 TDQREALLLTQLLGLSYADAAAVC-GCPVGTIRSRVARARDA 58 (70)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 455566666667789999999999 77999999887665443
No 101
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=57.62 E-value=18 Score=26.91 Aligned_cols=39 Identities=21% Similarity=0.334 Sum_probs=27.3
Q ss_pred HHHHHHHHHhCC--------chHHHhhhCCCCC----HHHHHHHHHHHHHH
Q 025697 65 ERLLASHRIHGN--------RWAVIARLFPGRT----DNAVKNHWHVIMAR 103 (249)
Q Consensus 65 ~~Llelv~~~G~--------~Ws~IA~~lpgRT----~~~cknrW~~~lkr 103 (249)
-.|..+|.+.|+ .|..||..|.--. ...++..|..+|-.
T Consensus 47 ~~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~~ 97 (107)
T 2lm1_A 47 YTLHRIVQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERILHP 97 (107)
T ss_dssp HHHHHHHHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHH
Confidence 357777888885 6999999885322 35677777666543
No 102
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=56.37 E-value=6.2 Score=30.13 Aligned_cols=39 Identities=28% Similarity=0.496 Sum_probs=28.8
Q ss_pred HHHHHHHHHCC-------CChhHhhHHhcCCChhhhhhhhhcccCC
Q 025697 14 KLRELVERYGP-------HNWNAIAEKLQGRSGKSCRLRWFNQLDP 52 (249)
Q Consensus 14 ~L~~~V~~~G~-------~~W~~IA~~l~~Rt~~qcr~Rw~~~L~p 52 (249)
+|..+|...|. ..|..||..|+--.+..++..|.++|-|
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~Lr~~Y~k~L~~ 98 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLP 98 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHTSCCTTHHHHHHHHHHSH
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence 46667777663 2599999999544478888888888765
No 103
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=56.26 E-value=21 Score=24.02 Aligned_cols=42 Identities=14% Similarity=0.204 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHH----hCCchHHHhhhCCCCCHHHHHHHHHHHHHHH
Q 025697 62 EEEERLLASHRI----HGNRWAVIARLFPGRTDNAVKNHWHVIMARR 104 (249)
Q Consensus 62 EED~~Llelv~~----~G~~Ws~IA~~lpgRT~~~cknrW~~~lkr~ 104 (249)
+.+..++.+.-- .|..+..||..+ |-|...|+.+....+++.
T Consensus 13 ~~er~il~l~~~l~~~~~~s~~eIA~~l-~is~~tV~~~~~ra~~kL 58 (73)
T 1ku3_A 13 EREAMVLKMRKGLIDGREHTLEEVGAYF-GVTRERIRQIENKALRKL 58 (73)
T ss_dssp HHHHHHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence 344455555544 578899999999 889999999877665544
No 104
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=53.54 E-value=11 Score=29.17 Aligned_cols=39 Identities=13% Similarity=0.244 Sum_probs=28.7
Q ss_pred HHHHHHHHhCC--------chHHHhhhCCCCCHHHHHHHHHHHHHHH
Q 025697 66 RLLASHRIHGN--------RWAVIARLFPGRTDNAVKNHWHVIMARR 104 (249)
Q Consensus 66 ~Llelv~~~G~--------~Ws~IA~~lpgRT~~~cknrW~~~lkr~ 104 (249)
.|..+|.+.|+ .|..||..|.--....++..|..+|-.-
T Consensus 52 ~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~Lr~~Y~k~L~~y 98 (123)
T 1kkx_A 52 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLPY 98 (123)
T ss_dssp HHHHHHTTTSCHHHHTTSHHHHHHHHHHTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHhccccccHHHHHHHHCCChHHHHHHHHHHHHHHH
Confidence 46677777775 6999999775444888888887776543
No 105
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=52.62 E-value=15 Score=27.97 Aligned_cols=39 Identities=21% Similarity=0.293 Sum_probs=27.3
Q ss_pred HHHHHHHHHhCC--------chHHHhhhCCCCC----HHHHHHHHHHHHHH
Q 025697 65 ERLLASHRIHGN--------RWAVIARLFPGRT----DNAVKNHWHVIMAR 103 (249)
Q Consensus 65 ~~Llelv~~~G~--------~Ws~IA~~lpgRT----~~~cknrW~~~lkr 103 (249)
-+|..+|...|| .|..||..|.--. ...++..|..+|-.
T Consensus 43 ~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~ 93 (117)
T 2jrz_A 43 YSLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYP 93 (117)
T ss_dssp HHHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 357788888885 6999999875322 45677777665543
No 106
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=49.34 E-value=22 Score=27.27 Aligned_cols=37 Identities=19% Similarity=0.341 Sum_probs=25.3
Q ss_pred HHHHHHHHhCC--------chHHHhhhCCCCC----HHHHHHHHHHHHH
Q 025697 66 RLLASHRIHGN--------RWAVIARLFPGRT----DNAVKNHWHVIMA 102 (249)
Q Consensus 66 ~Llelv~~~G~--------~Ws~IA~~lpgRT----~~~cknrW~~~lk 102 (249)
+|..+|.+.|+ .|..|+..|.--+ ...+|..|..+|-
T Consensus 46 ~Ly~~V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~ 94 (122)
T 2eqy_A 46 QLNKLVAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERILN 94 (122)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhH
Confidence 57778888885 6999999885322 2466666655553
No 107
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=49.13 E-value=22 Score=27.33 Aligned_cols=38 Identities=18% Similarity=0.286 Sum_probs=26.1
Q ss_pred HHHHHHHHHhCC--------chHHHhhhCCCCC----HHHHHHHHHHHHH
Q 025697 65 ERLLASHRIHGN--------RWAVIARLFPGRT----DNAVKNHWHVIMA 102 (249)
Q Consensus 65 ~~Llelv~~~G~--------~Ws~IA~~lpgRT----~~~cknrW~~~lk 102 (249)
-.|..+|...|+ .|..||..|.--+ ...+|..|..+|-
T Consensus 54 ~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~ 103 (125)
T 2cxy_A 54 FRLYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQYLF 103 (125)
T ss_dssp HHHHHHHHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHH
Confidence 357778888885 6999999885332 3466776755554
No 108
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=49.10 E-value=23 Score=23.44 Aligned_cols=41 Identities=10% Similarity=0.103 Sum_probs=29.7
Q ss_pred HHHHHHHHHH----HhCCchHHHhhhCCCCCHHHHHHHHHHHHHHH
Q 025697 63 EEERLLASHR----IHGNRWAVIARLFPGRTDNAVKNHWHVIMARR 104 (249)
Q Consensus 63 ED~~Llelv~----~~G~~Ws~IA~~lpgRT~~~cknrW~~~lkr~ 104 (249)
.+..++.+.- ..|-.+..||..+ |-|...|+.+....+++.
T Consensus 9 ~er~il~l~~~l~~~~g~s~~eIA~~l-gis~~tV~~~~~ra~~kL 53 (68)
T 2p7v_B 9 REAKVLRMRFGIDMNTDYTLEEVGKQF-DVTRERIRQIEAKALRKL 53 (68)
T ss_dssp HHHHHHHHHTTTTSSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 3444555443 3477899999999 889999999887665443
No 109
>2jvw_A Uncharacterized protein; solution structure, alpha helical protein, structural GE unknown function, PSI-2, protein structure initiative; NMR {Vibrio fischeri}
Probab=45.00 E-value=16 Score=26.76 Aligned_cols=45 Identities=29% Similarity=0.554 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHCCCChhHhhHHhcCCChhhhhhhhhcccCCC-------CCCCCCCHHHHHHHH
Q 025697 12 DEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLDPR-------INRSPFTEEEEERLL 68 (249)
Q Consensus 12 D~~L~~~V~~~G~~~W~~IA~~l~~Rt~~qcr~Rw~~~L~p~-------lkkg~WT~EED~~Ll 68 (249)
+.+|.++|+.|| |..+++.+.-|+-. -+|. +++.+|-.+..+.|.
T Consensus 18 E~ilt~Lv~~YG---W~~L~~~i~I~CF~---------~~PSikSSLKFLRKTpWAR~KVE~lY 69 (88)
T 2jvw_A 18 QKLLTELVEHYG---WEELSYMVNINCFK---------KDPSIKSSLKFLRKTDWARERVENIY 69 (88)
T ss_dssp HHHHHHHHHHTC---HHHHHHHTTSSSTT---------SSCCHHHHHHHHHHSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC---HHHHHhhcccccCC---------CCCchHHHHHHHhcCHhHHHHHHHHH
Confidence 568999999999 99999988655431 2333 356788888777654
No 110
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=44.76 E-value=43 Score=23.45 Aligned_cols=42 Identities=21% Similarity=0.228 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHhCCchHHHhhhCCCCCHHHHHHHHHHHHHHH
Q 025697 62 EEEERLLASHRIHGNRWAVIARLFPGRTDNAVKNHWHVIMARR 104 (249)
Q Consensus 62 EED~~Llelv~~~G~~Ws~IA~~lpgRT~~~cknrW~~~lkr~ 104 (249)
+.+..++.++-..|-.-..||..+ |-+...|+.+....+++.
T Consensus 40 ~~~r~vl~l~~~~g~s~~eIA~~l-gis~~tV~~~l~ra~~~L 81 (92)
T 3hug_A 40 AEHRAVIQRSYYRGWSTAQIATDL-GIAEGTVKSRLHYAVRAL 81 (92)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 445556666666788899999999 889999999886665443
No 111
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=42.75 E-value=57 Score=21.72 Aligned_cols=42 Identities=24% Similarity=0.268 Sum_probs=30.5
Q ss_pred CHHHHHHHHHHHHHhCCchHHHhhhCCCCCHHHHHHHHHHHHHHH
Q 025697 60 TEEEEERLLASHRIHGNRWAVIARLFPGRTDNAVKNHWHVIMARR 104 (249)
Q Consensus 60 T~EED~~Llelv~~~G~~Ws~IA~~lpgRT~~~cknrW~~~lkr~ 104 (249)
|+.| ..++.++ ..|-.-..||..+ |-+...|+.+...++++.
T Consensus 18 ~~~e-~~vl~l~-~~g~s~~eIA~~l-~is~~tV~~~~~r~~~kl 59 (79)
T 1x3u_A 18 SERE-RQVLSAV-VAGLPNKSIAYDL-DISPRTVEVHRANVMAKM 59 (79)
T ss_dssp CHHH-HHHHHHH-TTTCCHHHHHHHT-TSCHHHHHHHHHHHHHHT
T ss_pred CHHH-HHHHHHH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 4444 4444555 6678899999999 779999999887765543
No 112
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=41.84 E-value=14 Score=29.11 Aligned_cols=41 Identities=20% Similarity=0.246 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHCCCChhHhhHHhcCCChhhhhhhhhcccC
Q 025697 10 AEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLD 51 (249)
Q Consensus 10 EED~~L~~~V~~~G~~~W~~IA~~l~~Rt~~qcr~Rw~~~L~ 51 (249)
+-|.+|+.+++..|...|..||+.+ |-+...|+.|+..+..
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~~l-g~s~~tv~~rl~~L~~ 43 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKKV-GLSTTPCWRRIQKMEE 43 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHHH-TCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 4578899999988988999999999 7899999999877643
No 113
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=41.01 E-value=24 Score=26.83 Aligned_cols=39 Identities=23% Similarity=0.411 Sum_probs=26.3
Q ss_pred HHHHHHHHHCC-------CChhHhhHHhcCCC----hhhhhhhhhcccCC
Q 025697 14 KLRELVERYGP-------HNWNAIAEKLQGRS----GKSCRLRWFNQLDP 52 (249)
Q Consensus 14 ~L~~~V~~~G~-------~~W~~IA~~l~~Rt----~~qcr~Rw~~~L~p 52 (249)
+|..+|...|. ..|..||..|+--. +...+..|.++|-|
T Consensus 44 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~ 93 (117)
T 2jrz_A 44 SLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYP 93 (117)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 46777777763 25999999984322 35567778777754
No 114
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=40.43 E-value=1.1e+02 Score=22.86 Aligned_cols=79 Identities=15% Similarity=0.096 Sum_probs=47.9
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCChhHhhHHhcCCChhhhh---hhhhc--ccCCCCC----CCCCCHHHHHHHHHHHHHh
Q 025697 4 RGHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCR---LRWFN--QLDPRIN----RSPFTEEEEERLLASHRIH 74 (249)
Q Consensus 4 Kg~WT~EED~~L~~~V~~~G~~~W~~IA~~l~~Rt~~qcr---~Rw~~--~L~p~lk----kg~WT~EED~~Llelv~~~ 74 (249)
....|.++-..++.++. .| .....||+.+ |.+...++ .+|.. .+.+... ....+.+..+.|++++.+.
T Consensus 30 ~~~~s~e~r~~iv~~~~-~G-~s~~~iA~~l-gis~~TV~rw~~~~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~~~~~~ 106 (149)
T 1k78_A 30 GRPLPDVVRQRIVELAH-QG-VRPCDISRQL-RVSHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVEKIAEYKRQN 106 (149)
T ss_dssp TSCCCHHHHHHHHHHHH-TT-CCHHHHHHHH-TCCHHHHHHHHHHHHHHSCCCCCCCCCCCCSSSCHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHH-cC-CCHHHHHHHH-CcCHHHHHHHHHHHHHcCCCCccCCCCCCCCCCCHHHHHHHHHHHHhC
Confidence 45688888888888874 46 4689999988 55555443 22322 1222211 2347888888888888765
Q ss_pred C-CchHHHhhhC
Q 025697 75 G-NRWAVIARLF 85 (249)
Q Consensus 75 G-~~Ws~IA~~l 85 (249)
+ ..-..|+..+
T Consensus 107 ~~~s~~~i~~~l 118 (149)
T 1k78_A 107 PTMFAWEIRDRL 118 (149)
T ss_dssp TTCCHHHHHHHH
T ss_pred cchhHHHHHHHH
Confidence 4 2233454433
No 115
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=39.52 E-value=35 Score=26.96 Aligned_cols=40 Identities=10% Similarity=0.088 Sum_probs=28.3
Q ss_pred HHHHHHHHHhCC--------chHHHhhhCCC--C---CHHHHHHHHHHHHHHH
Q 025697 65 ERLLASHRIHGN--------RWAVIARLFPG--R---TDNAVKNHWHVIMARR 104 (249)
Q Consensus 65 ~~Llelv~~~G~--------~Ws~IA~~lpg--R---T~~~cknrW~~~lkr~ 104 (249)
-.|..+|.+.|+ .|..||..|.- . ....++..|..+|-.-
T Consensus 67 ~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~y 119 (145)
T 2kk0_A 67 FMLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYPY 119 (145)
T ss_dssp HHHHHHHHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSHH
T ss_pred HHHHHHHHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHHH
Confidence 357788888886 69999997742 1 2467888887766543
No 116
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=39.12 E-value=34 Score=26.30 Aligned_cols=41 Identities=10% Similarity=0.073 Sum_probs=29.5
Q ss_pred HHHHHHHHHhCC--------chHHHhhhCCC--C---CHHHHHHHHHHHHHHHH
Q 025697 65 ERLLASHRIHGN--------RWAVIARLFPG--R---TDNAVKNHWHVIMARRC 105 (249)
Q Consensus 65 ~~Llelv~~~G~--------~Ws~IA~~lpg--R---T~~~cknrW~~~lkr~~ 105 (249)
-.|..+|...|| .|..||..|.- . ....++..|..+|-.--
T Consensus 55 ~~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~yE 108 (128)
T 1c20_A 55 YELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYE 108 (128)
T ss_dssp HHHHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 467788888885 69999997742 2 14678888877765543
No 117
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=39.08 E-value=19 Score=27.83 Aligned_cols=55 Identities=20% Similarity=0.260 Sum_probs=35.5
Q ss_pred HHHHHHHHHCC-------CChhHhhHHhcC-C----ChhhhhhhhhcccCCCCCCCCCCHHHHHHHHHHH
Q 025697 14 KLRELVERYGP-------HNWNAIAEKLQG-R----SGKSCRLRWFNQLDPRINRSPFTEEEEERLLASH 71 (249)
Q Consensus 14 ~L~~~V~~~G~-------~~W~~IA~~l~~-R----t~~qcr~Rw~~~L~p~lkkg~WT~EED~~Llelv 71 (249)
+|..+|.+.|. ..|..||..|+- . .....+..|.++|.|-- ..+.+|-..|.+-|
T Consensus 46 ~Ly~~V~~~GG~~~Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~YE---~~~~~e~~~l~~~v 112 (121)
T 2rq5_A 46 CFFRLINEMGGMQQVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSYD---SLSPEEHRRLEKEV 112 (121)
T ss_dssp HHHHHHHHTTSHHHHHHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHHHH---HCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCcHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHHHH---CcCHHHHhhHHHHH
Confidence 34455555542 259999999932 1 13567888988887632 36778888877654
No 118
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=38.99 E-value=55 Score=23.25 Aligned_cols=44 Identities=23% Similarity=0.159 Sum_probs=32.6
Q ss_pred CCCHHHHHHHHHHHHHhCCchHHHhhhCCCCCHHHHHHHHHHHHHHH
Q 025697 58 PFTEEEEERLLASHRIHGNRWAVIARLFPGRTDNAVKNHWHVIMARR 104 (249)
Q Consensus 58 ~WT~EED~~Llelv~~~G~~Ws~IA~~lpgRT~~~cknrW~~~lkr~ 104 (249)
..|+.|-+. +.++ ..|-.-..||..+ |-+...|+.+...++++.
T Consensus 27 ~Lt~~e~~v-l~l~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~kL 70 (95)
T 3c57_A 27 GLTDQERTL-LGLL-SEGLTNKQIADRM-FLAEKTVKNYVSRLLAKL 70 (95)
T ss_dssp CCCHHHHHH-HHHH-HTTCCHHHHHHHH-TCCHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHH-HHHH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 355555544 4445 7788899999999 789999999887765543
No 119
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=38.69 E-value=24 Score=25.62 Aligned_cols=39 Identities=21% Similarity=0.386 Sum_probs=24.9
Q ss_pred HHHHHHHHHCC-------CChhHhhHHhcCCC----hhhhhhhhhcccCC
Q 025697 14 KLRELVERYGP-------HNWNAIAEKLQGRS----GKSCRLRWFNQLDP 52 (249)
Q Consensus 14 ~L~~~V~~~G~-------~~W~~IA~~l~~Rt----~~qcr~Rw~~~L~p 52 (249)
+|..+|...|. ..|..||..|+--. +..++..|.++|-|
T Consensus 40 ~Ly~~V~~~GG~~~V~~~~~W~~v~~~lg~~~~~~~~~~Lk~~Y~k~L~~ 89 (96)
T 2jxj_A 40 ALSKIVASKGGFEMVTKEKKWSKVGSRLGYLPGKGTGSLLKSHYERILYP 89 (96)
T ss_dssp HHHHHHHHHHTTHHHHHHTTHHHHHHHHTCCSCSCHHHHHHHHHTTTTHH
T ss_pred HHHHHHHHcCCHHHHccCCcHHHHHHHhCCCCcCcHHHHHHHHHHHHHHH
Confidence 45566666642 25999999984211 35667778777643
No 120
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=38.24 E-value=1.1e+02 Score=22.23 Aligned_cols=93 Identities=12% Similarity=0.116 Sum_probs=56.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCChhHhhHHhcCCChhhhhhhhhcccCC-----CCCCCCCCHHHHHHHHHHHHHhC
Q 025697 1 MCTRGHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLDP-----RINRSPFTEEEEERLLASHRIHG 75 (249)
Q Consensus 1 ~~~Kg~WT~EED~~L~~~V~~~G~~~W~~IA~~l~~Rt~~qcr~Rw~~~L~p-----~lkkg~WT~EED~~Llelv~~~G 75 (249)
|-+....|.++-..++.++. .| ..-..||+.+ |.+...++.-...+... .......+.+++..|+.+ ...+
T Consensus 1 Mgr~~~~s~~~r~~i~~~~~-~G-~s~~~ia~~l-gis~~Tv~r~~~~~~~~g~~~~~gr~~~l~~~~~~~i~~~-~~~~ 76 (141)
T 1u78_A 1 MPRGSALSDTERAQLDVMKL-LN-VSLHEMSRKI-SRSRHCIRVYLKDPVSYGTSKRAPRRKALSVRDERNVIRA-ASNS 76 (141)
T ss_dssp -CCSCCCCHHHHHHHHHHHH-TT-CCHHHHHHHH-TCCHHHHHHHHHSGGGTTCCCCCCCCCSSCHHHHHHHHHH-HHHC
T ss_pred CCCcccCCHHHHHHHHHHHH-cC-CCHHHHHHHH-CcCHHHHHHHHHcccccCCcCCCCCCCcCCHHHHHHHHHH-HhCC
Confidence 44556788888888888774 46 4689999988 56666654322222111 112235788888888877 3333
Q ss_pred -CchHHHhhhCCC-CCHHHHHHHH
Q 025697 76 -NRWAVIARLFPG-RTDNAVKNHW 97 (249)
Q Consensus 76 -~~Ws~IA~~lpg-RT~~~cknrW 97 (249)
-.-..|+..|+- -+...|....
T Consensus 77 ~~s~~~i~~~lg~~~s~~tV~r~l 100 (141)
T 1u78_A 77 CKTARDIRNELQLSASKRTILNVI 100 (141)
T ss_dssp CCCHHHHHHHTTCCSCHHHHHHHH
T ss_pred CCCHHHHHHHHCCCccHHHHHHHH
Confidence 345778887731 4666665543
No 121
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=37.90 E-value=73 Score=22.61 Aligned_cols=45 Identities=16% Similarity=0.089 Sum_probs=34.2
Q ss_pred CCCCHHHHHHHHHHHHHhCCchHHHhhhCCCCCHHHHHHHHHHHHHHH
Q 025697 57 SPFTEEEEERLLASHRIHGNRWAVIARLFPGRTDNAVKNHWHVIMARR 104 (249)
Q Consensus 57 g~WT~EED~~Llelv~~~G~~Ws~IA~~lpgRT~~~cknrW~~~lkr~ 104 (249)
...|..|-+.|.-++ .|..-..||..| |-+...|+.+...++++.
T Consensus 28 ~~Lt~rE~~Vl~l~~--~G~s~~eIA~~L-~iS~~TV~~~~~~i~~Kl 72 (90)
T 3ulq_B 28 DVLTPRECLILQEVE--KGFTNQEIADAL-HLSKRSIEYSLTSIFNKL 72 (90)
T ss_dssp -CCCHHHHHHHHHHH--TTCCHHHHHHHH-TCCHHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHH--cCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 356777666555443 788999999999 889999999998776543
No 122
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=37.78 E-value=20 Score=26.62 Aligned_cols=39 Identities=18% Similarity=0.433 Sum_probs=26.3
Q ss_pred HHHHHHHHHCC-------CChhHhhHHhcCC-----ChhhhhhhhhcccCC
Q 025697 14 KLRELVERYGP-------HNWNAIAEKLQGR-----SGKSCRLRWFNQLDP 52 (249)
Q Consensus 14 ~L~~~V~~~G~-------~~W~~IA~~l~~R-----t~~qcr~Rw~~~L~p 52 (249)
+|..+|...|. ..|..||..|+-- .+.+++..|.++|-+
T Consensus 37 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L~~ 87 (107)
T 1ig6_A 37 TMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERLILP 87 (107)
T ss_dssp HHHHHHHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHHHHHTTT
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 45666666652 2599999999421 235678888888865
No 123
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=37.10 E-value=59 Score=21.18 Aligned_cols=45 Identities=20% Similarity=0.180 Sum_probs=33.1
Q ss_pred CCCCHHHHHHHHHHHHHhCCchHHHhhhCCCCCHHHHHHHHHHHHHHH
Q 025697 57 SPFTEEEEERLLASHRIHGNRWAVIARLFPGRTDNAVKNHWHVIMARR 104 (249)
Q Consensus 57 g~WT~EED~~Llelv~~~G~~Ws~IA~~lpgRT~~~cknrW~~~lkr~ 104 (249)
..+|+.|-+.|.- + ..|..-..||..+ |-+...|+.+...+.++.
T Consensus 10 ~~L~~~e~~il~~-~-~~g~s~~eIA~~l-~is~~tV~~~~~~~~~kl 54 (74)
T 1fse_A 10 PLLTKREREVFEL-L-VQDKTTKEIASEL-FISEKTVRNHISNAMQKL 54 (74)
T ss_dssp CCCCHHHHHHHHH-H-TTTCCHHHHHHHH-TSCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHH-H-HcCCCHHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence 3566666655544 4 6678899999999 779999999887765443
No 124
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=36.44 E-value=67 Score=20.24 Aligned_cols=39 Identities=18% Similarity=0.119 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhCCchHHHhhhCCCCCHHHHHHHHHHHHHHH
Q 025697 64 EERLLASHRIHGNRWAVIARLFPGRTDNAVKNHWHVIMARR 104 (249)
Q Consensus 64 D~~Llelv~~~G~~Ws~IA~~lpgRT~~~cknrW~~~lkr~ 104 (249)
+..++.+ -..|-.-..||..+ |-+...|+.+...++++.
T Consensus 3 e~~vl~l-~~~g~s~~eIA~~l-~is~~tV~~~~~~~~~kl 41 (61)
T 2jpc_A 3 ERQVLKL-IDEGYTNHGISEKL-HISIKTVETHRMNMMRKL 41 (61)
T ss_dssp HHHHHHH-HHTSCCSHHHHHHT-CSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHcCCCHHHHHHHh-CCCHHHHHHHHHHHHHHH
Confidence 3445555 35677889999999 789999999987766543
No 125
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=36.31 E-value=58 Score=22.44 Aligned_cols=44 Identities=25% Similarity=0.275 Sum_probs=32.3
Q ss_pred CCCHHHHHHHHHHHHHhCCchHHHhhhCCCCCHHHHHHHHHHHHHHH
Q 025697 58 PFTEEEEERLLASHRIHGNRWAVIARLFPGRTDNAVKNHWHVIMARR 104 (249)
Q Consensus 58 ~WT~EED~~Llelv~~~G~~Ws~IA~~lpgRT~~~cknrW~~~lkr~ 104 (249)
..|+.|-+.| .++ ..|-.-.+||..+ |-+...|+.+...++++.
T Consensus 21 ~Lt~~e~~vl-~l~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~kL 64 (82)
T 1je8_A 21 QLTPRERDIL-KLI-AQGLPNKMIARRL-DITESTVKVHVKHMLKKM 64 (82)
T ss_dssp GSCHHHHHHH-HHH-TTTCCHHHHHHHH-TSCHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHH-HHH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 3566655444 444 6788899999999 789999999887665443
No 126
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=36.12 E-value=1.1e+02 Score=24.99 Aligned_cols=28 Identities=14% Similarity=0.194 Sum_probs=19.0
Q ss_pred hhhhhhhcccC-CCCCCCCCCHHHHHHHH
Q 025697 41 SCRLRWFNQLD-PRINRSPFTEEEEERLL 68 (249)
Q Consensus 41 qcr~Rw~~~L~-p~lkkg~WT~EED~~Ll 68 (249)
.+-..|..-.. |.-..|-||.++|+.|.
T Consensus 98 ~VL~~l~~GkgiP~N~pGIWT~eDDe~L~ 126 (168)
T 3cz6_A 98 YFLNMFKDNVNPPPNVPGIWTHDDDESLK 126 (168)
T ss_dssp HHHHHHHHTCSSCTTCTTCCCHHHHHHHH
T ss_pred HHHHHHHhCCCCCCCCCCCCChhhHHHHH
Confidence 34444444333 45678999999999987
No 127
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=34.67 E-value=34 Score=26.79 Aligned_cols=43 Identities=9% Similarity=0.047 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHhC-CchHHHhhhCCCCCHHHHHHHHHHHHHHHH
Q 025697 62 EEEERLLASHRIHG-NRWAVIARLFPGRTDNAVKNHWHVIMARRC 105 (249)
Q Consensus 62 EED~~Llelv~~~G-~~Ws~IA~~lpgRT~~~cknrW~~~lkr~~ 105 (249)
+-|..|+.+..+.| -.|..||+.+ |=|...|+.|++.+....+
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~~l-g~s~~tv~~rl~~L~~~g~ 46 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKKV-GLSTTPCWRRIQKMEEDGV 46 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHHH-TCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCC
Confidence 45778888887776 5799999999 8899999999977765544
No 128
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=34.21 E-value=30 Score=26.50 Aligned_cols=38 Identities=21% Similarity=0.365 Sum_probs=24.8
Q ss_pred HHHHHHHHHCC-------CChhHhhHHhcCCC----hhhhhhhhhcccC
Q 025697 14 KLRELVERYGP-------HNWNAIAEKLQGRS----GKSCRLRWFNQLD 51 (249)
Q Consensus 14 ~L~~~V~~~G~-------~~W~~IA~~l~~Rt----~~qcr~Rw~~~L~ 51 (249)
+|..+|...|. ..|..||..|+--+ +..++..|.++|-
T Consensus 55 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~ 103 (125)
T 2cxy_A 55 RLYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQYLF 103 (125)
T ss_dssp HHHHHHHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHH
Confidence 46667777663 25999999984322 3456777777664
No 129
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=33.19 E-value=93 Score=24.01 Aligned_cols=29 Identities=14% Similarity=0.150 Sum_probs=23.2
Q ss_pred hCCchHHHhhhCCCCCHHHHHHHHHHHHHH
Q 025697 74 HGNRWAVIARLFPGRTDNAVKNHWHVIMAR 103 (249)
Q Consensus 74 ~G~~Ws~IA~~lpgRT~~~cknrW~~~lkr 103 (249)
.|-....||..+ |-+...|+++....+++
T Consensus 155 ~g~s~~EIA~~l-gis~~tV~~~l~ra~~~ 183 (194)
T 1or7_A 155 DGLSYEEIAAIM-DCPVGTVRSRIFRAREA 183 (194)
T ss_dssp TCCCHHHHHHHT-TSCHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 366799999999 78999999988666544
No 130
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=32.95 E-value=33 Score=26.24 Aligned_cols=38 Identities=29% Similarity=0.438 Sum_probs=24.9
Q ss_pred HHHHHHHHHCC-------CChhHhhHHhcCCC----hhhhhhhhhcccC
Q 025697 14 KLRELVERYGP-------HNWNAIAEKLQGRS----GKSCRLRWFNQLD 51 (249)
Q Consensus 14 ~L~~~V~~~G~-------~~W~~IA~~l~~Rt----~~qcr~Rw~~~L~ 51 (249)
+|..+|...|. ..|..||..|+--. +...+..|.++|-
T Consensus 46 ~Ly~~V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~ 94 (122)
T 2eqy_A 46 QLNKLVAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERILN 94 (122)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhH
Confidence 46677777763 25999999984322 2456777777664
No 131
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=32.12 E-value=51 Score=25.32 Aligned_cols=40 Identities=8% Similarity=0.149 Sum_probs=28.9
Q ss_pred HHHHHHHHhCC--------chHHHhhhCCC-C----CHHHHHHHHHHHHHHHH
Q 025697 66 RLLASHRIHGN--------RWAVIARLFPG-R----TDNAVKNHWHVIMARRC 105 (249)
Q Consensus 66 ~Llelv~~~G~--------~Ws~IA~~lpg-R----T~~~cknrW~~~lkr~~ 105 (249)
+|..+|.+.|+ .|..||..|.- . ....++.+|..+|-.--
T Consensus 46 ~Ly~~V~~~GG~~~Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~YE 98 (121)
T 2rq5_A 46 CFFRLINEMGGMQQVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSYD 98 (121)
T ss_dssp HHHHHHHHTTSHHHHHHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHcCcHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHHHH
Confidence 57788888886 69999997742 1 24678888877776543
No 132
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=31.68 E-value=82 Score=21.82 Aligned_cols=42 Identities=10% Similarity=0.067 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHH----hCCchHHHhhhCCCCCHHHHHHHHHHHHHHH
Q 025697 62 EEEERLLASHRI----HGNRWAVIARLFPGRTDNAVKNHWHVIMARR 104 (249)
Q Consensus 62 EED~~Llelv~~----~G~~Ws~IA~~lpgRT~~~cknrW~~~lkr~ 104 (249)
+.+..++.+.-- .|-.+..||..+ |-|...|+.+-...+++.
T Consensus 21 ~~er~vl~l~~~l~~~~~~s~~EIA~~l-gis~~tV~~~~~ra~~kL 66 (87)
T 1tty_A 21 PREAMVLRMRYGLLDGKPKTLEEVGQYF-NVTRERIRQIEVKALRKL 66 (87)
T ss_dssp HHHHHHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence 344455555443 567899999999 889999999876665443
No 133
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=31.14 E-value=23 Score=29.11 Aligned_cols=14 Identities=36% Similarity=0.807 Sum_probs=12.6
Q ss_pred CCCCCCHHHHHHHH
Q 025697 3 TRGHWRPAEDEKLR 16 (249)
Q Consensus 3 ~Kg~WT~EED~~L~ 16 (249)
.+|-||+++|+.|.
T Consensus 113 ~pGIWT~eDDe~L~ 126 (168)
T 3cz6_A 113 VPGIWTHDDDESLK 126 (168)
T ss_dssp CTTCCCHHHHHHHH
T ss_pred CCCCCChhhHHHHH
Confidence 37999999999998
No 134
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=30.92 E-value=45 Score=26.39 Aligned_cols=36 Identities=28% Similarity=0.504 Sum_probs=27.6
Q ss_pred hhHhhHHhcCCChhhhhhhhhcccCCCCCCCCCCHHHHHHHHH
Q 025697 27 WNAIAEKLQGRSGKSCRLRWFNQLDPRINRSPFTEEEEERLLA 69 (249)
Q Consensus 27 W~~IA~~l~~Rt~~qcr~Rw~~~L~p~lkkg~WT~EED~~Lle 69 (249)
-..||..+.|+|+..||..+. + ...+|+||++.+.+
T Consensus 118 c~~vA~~ikgkt~eeir~~f~------I-~nd~t~eEe~~ir~ 153 (160)
T 2p1m_A 118 CQTVADMIKGKTPEEIRTTFN------I-KNDFTPEEEEEVRR 153 (160)
T ss_dssp HHHHHHTTTTCCHHHHHHHTT------C-CCCCCHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHcC------C-CCCCCHHHHHHHHH
Confidence 467888889999999998762 2 22589999988764
No 135
>2kvs_A Uncharacterized protein MW0776; PSI-2, NESG, BIG target, structural genomics, protein structure initiative; NMR {Staphylococcus aureus}
Probab=30.16 E-value=8.6 Score=27.93 Aligned_cols=13 Identities=31% Similarity=0.764 Sum_probs=10.7
Q ss_pred CCccccccceeec
Q 025697 193 NQPVEFYDFLQVN 205 (249)
Q Consensus 193 ~~~~~~~~~~~~~ 205 (249)
+..|+||+|||.-
T Consensus 3 ~~~MSFY~flmtf 15 (80)
T 2kvs_A 3 GDPMTFYNFIMGF 15 (80)
T ss_dssp CCCCHHHHHHTTT
T ss_pred CccccHHHHHHHc
Confidence 5689999999863
No 136
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=29.75 E-value=33 Score=27.05 Aligned_cols=39 Identities=26% Similarity=0.370 Sum_probs=26.9
Q ss_pred HHHHHHHHHCC-------CChhHhhHHhcC--C---ChhhhhhhhhcccCC
Q 025697 14 KLRELVERYGP-------HNWNAIAEKLQG--R---SGKSCRLRWFNQLDP 52 (249)
Q Consensus 14 ~L~~~V~~~G~-------~~W~~IA~~l~~--R---t~~qcr~Rw~~~L~p 52 (249)
+|..+|...|. ..|..||..|+- . .+..++..|.++|-|
T Consensus 68 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~ 118 (145)
T 2kk0_A 68 MLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYP 118 (145)
T ss_dssp HHHHHHHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSH
T ss_pred HHHHHHHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHH
Confidence 46667777663 259999999842 1 135678888888876
No 137
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=29.21 E-value=1.1e+02 Score=22.45 Aligned_cols=42 Identities=14% Similarity=0.098 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHhCCchHHHhhhCCCCCHHHHHHHHHHHHHHH
Q 025697 62 EEEERLLASHRIHGNRWAVIARLFPGRTDNAVKNHWHVIMARR 104 (249)
Q Consensus 62 EED~~Llelv~~~G~~Ws~IA~~lpgRT~~~cknrW~~~lkr~ 104 (249)
+.+..++.++-..|-....||..+ |-+...|+.+.+..+++.
T Consensus 28 ~~~r~vl~l~~~~g~s~~EIA~~l-giS~~tV~~~l~ra~~kL 69 (113)
T 1xsv_A 28 NKQRNYLELFYLEDYSLSEIADTF-NVSRQAVYDNIRRTGDLV 69 (113)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHT-TCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 344556666666788899999999 889999999876665443
No 138
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=29.06 E-value=1e+02 Score=23.38 Aligned_cols=44 Identities=7% Similarity=0.052 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHhC-CchHHHhhhCCCCCHHHHHHHHHHHHHHHHh
Q 025697 62 EEEERLLASHRIHG-NRWAVIARLFPGRTDNAVKNHWHVIMARRCR 106 (249)
Q Consensus 62 EED~~Llelv~~~G-~~Ws~IA~~lpgRT~~~cknrW~~~lkr~~~ 106 (249)
+-|..|+.+....| -.+..||+.+ |=+...|..+.+.+.+..+-
T Consensus 9 ~~d~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l~~L~~~G~i 53 (151)
T 2dbb_A 9 RVDMQLVKILSENSRLTYRELADIL-NTTRQRIARRIDKLKKLGII 53 (151)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHT-TSCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCE
Confidence 44566777777666 5799999999 77999999999777655543
No 139
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=28.88 E-value=59 Score=25.01 Aligned_cols=29 Identities=14% Similarity=0.095 Sum_probs=23.4
Q ss_pred hCCchHHHhhhCCCCCHHHHHHHHHHHHHH
Q 025697 74 HGNRWAVIARLFPGRTDNAVKNHWHVIMAR 103 (249)
Q Consensus 74 ~G~~Ws~IA~~lpgRT~~~cknrW~~~lkr 103 (249)
.|-....||..+ |-|...|+++....+++
T Consensus 150 ~g~s~~eIA~~l-gis~~tV~~~l~ra~~~ 178 (184)
T 2q1z_A 150 GDLTHRELAAET-GLPLGTIKSRIRLALDR 178 (184)
T ss_dssp SCCSSCCSTTTC-CCCCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 466789999999 78999999988766544
No 140
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=28.04 E-value=69 Score=22.34 Aligned_cols=43 Identities=30% Similarity=0.187 Sum_probs=31.6
Q ss_pred CCHHHHHHHHHHHHHhCCchHHHhhhCCCCCHHHHHHHHHHHHHHH
Q 025697 59 FTEEEEERLLASHRIHGNRWAVIARLFPGRTDNAVKNHWHVIMARR 104 (249)
Q Consensus 59 WT~EED~~Llelv~~~G~~Ws~IA~~lpgRT~~~cknrW~~~lkr~ 104 (249)
.|+.|-+.| .++ ..|-.-..||..| |-+...|+.+...++++.
T Consensus 30 Lt~~e~~vl-~l~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~kL 72 (91)
T 2rnj_A 30 LTEREMEIL-LLI-AKGYSNQEIASAS-HITIKTVKTHVSNILSKL 72 (91)
T ss_dssp CCSHHHHHH-HHH-HTTCCTTHHHHHH-TCCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHH-HHH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 454554444 444 6788899999999 889999999987766543
No 141
>2yqf_A Ankyrin-1; death domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yvi_A
Probab=27.96 E-value=91 Score=23.02 Aligned_cols=34 Identities=24% Similarity=0.337 Sum_probs=26.9
Q ss_pred CHHHHHHHHHHHHHhCCchHHHhhhCCCCCHHHHH
Q 025697 60 TEEEEERLLASHRIHGNRWAVIARLFPGRTDNAVK 94 (249)
Q Consensus 60 T~EED~~Llelv~~~G~~Ws~IA~~lpgRT~~~ck 94 (249)
++.-+..|..+....|..|..+|+.| |=+..+|.
T Consensus 14 ~~~~~~~~~~ia~~lg~~Wk~LAr~L-g~s~~~I~ 47 (111)
T 2yqf_A 14 TEQAEMKMAVISEHLGLSWAELAREL-QFSVEDIN 47 (111)
T ss_dssp SHHHHHHHHHHHHHHTTTHHHHHHHT-TCCHHHHH
T ss_pred HhHHHHHHHHHHHHHhhhHHHHHHHc-CCCHHHHH
Confidence 66677788888899999999999999 55555443
No 142
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*
Probab=27.04 E-value=52 Score=26.42 Aligned_cols=36 Identities=33% Similarity=0.446 Sum_probs=28.1
Q ss_pred hhHhhHHhcCCChhhhhhhhhcccCCCCCCCCCCHHHHHHHHH
Q 025697 27 WNAIAEKLQGRSGKSCRLRWFNQLDPRINRSPFTEEEEERLLA 69 (249)
Q Consensus 27 W~~IA~~l~~Rt~~qcr~Rw~~~L~p~lkkg~WT~EED~~Lle 69 (249)
-..||..+.|+|+.++|..+. +. ..+|+||++.+.+
T Consensus 126 c~~vA~~ikgktpeeiR~~f~------I~-nd~t~eEe~~ir~ 161 (169)
T 3v7d_A 126 CKVVAEMIRGRSPEEIRRTFN------IV-NDFTPEEEAAIRR 161 (169)
T ss_dssp HHHHHHHHTTCCHHHHHHHHT------CC-CCCCHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHcC------CC-CCCCHHHHHHHHH
Confidence 677888889999999998762 22 2599999988654
No 143
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=25.51 E-value=56 Score=25.96 Aligned_cols=42 Identities=14% Similarity=0.172 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHCCCChhHhhHHhcCCChhhhhhhhhcccCC
Q 025697 10 AEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLDP 52 (249)
Q Consensus 10 EED~~L~~~V~~~G~~~W~~IA~~l~~Rt~~qcr~Rw~~~L~p 52 (249)
+-|.+|+.++...|...+..||+.+ |-+...|+.|...+...
T Consensus 27 ~~d~~IL~~L~~~~~~s~~eLA~~l-glS~~tv~~rl~~L~~~ 68 (171)
T 2e1c_A 27 EIDKKIIKILQNDGKAPLREISKIT-GLAESTIHERIRKLRES 68 (171)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHH-TSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHC
Confidence 4567888888888888999999998 67999999888765433
No 144
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=25.26 E-value=2.2e+02 Score=21.51 Aligned_cols=67 Identities=13% Similarity=0.122 Sum_probs=42.6
Q ss_pred CCCCHHHHHHHHHHHHHHCCCChhHhhHHhcCCChhhhhhhhhcc------cCCCCC----CCCCCHHHHHHHHHHHHHh
Q 025697 5 GHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQ------LDPRIN----RSPFTEEEEERLLASHRIH 74 (249)
Q Consensus 5 g~WT~EED~~L~~~V~~~G~~~W~~IA~~l~~Rt~~qcr~Rw~~~------L~p~lk----kg~WT~EED~~Llelv~~~ 74 (249)
...|.++-..++.++. .| .....||+.+ +.+...++ +|... +.+... ....+.++.+.|++++.+.
T Consensus 24 ~~~s~e~r~~ii~l~~-~G-~s~~~IA~~l-gis~~TV~-rwl~r~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~~~~~~ 99 (159)
T 2k27_A 24 RPLPEVVRQRIVDLAH-QG-VRPCDISRQL-RVSHGCVS-KILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQN 99 (159)
T ss_dssp CSSCHHHHHHHHHHHH-HT-CCHHHHHHHH-TCCSHHHH-HHHCCSSTTSCCCCCCCCCCCCCCCCTTHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHH-cC-CCHHHHHHHH-CcCHHHHH-HHHHHHHhcCCccCCCCCCCCCCCCCHHHHHHHHHHHHHC
Confidence 4678888888888874 56 4689999988 45555443 34332 222111 2346777788888887654
Q ss_pred C
Q 025697 75 G 75 (249)
Q Consensus 75 G 75 (249)
+
T Consensus 100 ~ 100 (159)
T 2k27_A 100 P 100 (159)
T ss_dssp S
T ss_pred c
Confidence 3
No 145
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=24.77 E-value=85 Score=24.85 Aligned_cols=43 Identities=9% Similarity=0.235 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHhC-CchHHHhhhCCCCCHHHHHHHHHHHHHHHH
Q 025697 62 EEEERLLASHRIHG-NRWAVIARLFPGRTDNAVKNHWHVIMARRC 105 (249)
Q Consensus 62 EED~~Llelv~~~G-~~Ws~IA~~lpgRT~~~cknrW~~~lkr~~ 105 (249)
+-|..|+.+....| -.+..||+.+ |-+...|..+.+.+.+..+
T Consensus 27 ~~d~~IL~~L~~~~~~s~~eLA~~l-glS~~tv~~rl~~L~~~G~ 70 (171)
T 2e1c_A 27 EIDKKIIKILQNDGKAPLREISKIT-GLAESTIHERIRKLRESGV 70 (171)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHH-TSCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCC
Confidence 45667777777766 5799999999 7799999999977765444
No 146
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=23.88 E-value=1.3e+02 Score=22.13 Aligned_cols=29 Identities=17% Similarity=0.332 Sum_probs=22.4
Q ss_pred hCCchHHHhhhCCCCCHHHHHHHHHHHHHH
Q 025697 74 HGNRWAVIARLFPGRTDNAVKNHWHVIMAR 103 (249)
Q Consensus 74 ~G~~Ws~IA~~lpgRT~~~cknrW~~~lkr 103 (249)
.|-....||..+ |-|...|+++....+++
T Consensus 123 ~g~s~~EIA~~l-gis~~tV~~~~~ra~~~ 151 (164)
T 3mzy_A 123 RGYSYREIATIL-SKNLKSIDNTIQRIRKK 151 (164)
T ss_dssp TTCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 456789999999 78999999887665443
No 147
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=23.82 E-value=1.1e+02 Score=20.02 Aligned_cols=32 Identities=13% Similarity=-0.110 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHhCCchHHHhhhCCCCCHHHHH
Q 025697 62 EEEERLLASHRIHGNRWAVIARLFPGRTDNAVK 94 (249)
Q Consensus 62 EED~~Llelv~~~G~~Ws~IA~~lpgRT~~~ck 94 (249)
-|...|.++...+|++++..|+.| |=+...+.
T Consensus 19 ~E~~~i~~aL~~~~gn~~~aA~~L-Gisr~tL~ 50 (63)
T 3e7l_A 19 FEKIFIEEKLREYDYDLKRTAEEI-GIDLSNLY 50 (63)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHH-TCCHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHH-CcCHHHHH
Confidence 366678889999999999999988 43544433
No 148
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=23.79 E-value=1.6e+02 Score=23.31 Aligned_cols=30 Identities=10% Similarity=0.036 Sum_probs=23.5
Q ss_pred HhCCchHHHhhhCCCCCHHHHHHHHHHHHHH
Q 025697 73 IHGNRWAVIARLFPGRTDNAVKNHWHVIMAR 103 (249)
Q Consensus 73 ~~G~~Ws~IA~~lpgRT~~~cknrW~~~lkr 103 (249)
..|-....||..+ |-|...|+.+....+++
T Consensus 201 ~~g~s~~EIA~~l-gis~~~V~~~~~ra~~~ 230 (239)
T 1rp3_A 201 YEELPAKEVAKIL-ETSVSRVSQLKAKALER 230 (239)
T ss_dssp TSCCCHHHHHHHT-TSCHHHHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHh-CCCHHHHHHHHHHHHHH
Confidence 3467899999999 88999998887655443
No 149
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=23.21 E-value=1.3e+02 Score=22.74 Aligned_cols=43 Identities=9% Similarity=0.235 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHhC-CchHHHhhhCCCCCHHHHHHHHHHHHHHHH
Q 025697 62 EEEERLLASHRIHG-NRWAVIARLFPGRTDNAVKNHWHVIMARRC 105 (249)
Q Consensus 62 EED~~Llelv~~~G-~~Ws~IA~~lpgRT~~~cknrW~~~lkr~~ 105 (249)
+-|..|+.+....| ..+..||+.+ |-+...|..+...+....+
T Consensus 7 ~~~~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l~~L~~~G~ 50 (151)
T 2cyy_A 7 EIDKKIIKILQNDGKAPLREISKIT-GLAESTIHERIRKLRESGV 50 (151)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHH-CSCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCC
Confidence 34556777777666 5799999999 7799999999977765544
No 150
>2of5_H Leucine-rich repeat and death domain-containing protein; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=23.13 E-value=85 Score=23.58 Aligned_cols=28 Identities=25% Similarity=0.368 Sum_probs=21.8
Q ss_pred HHHHHHHHHhCCchHHHhhhCCCCCHHHH
Q 025697 65 ERLLASHRIHGNRWAVIARLFPGRTDNAV 93 (249)
Q Consensus 65 ~~Llelv~~~G~~Ws~IA~~lpgRT~~~c 93 (249)
..|..+....|..|..+|+.| |=+..+|
T Consensus 14 ~~l~~ia~~lg~dWk~LAr~L-g~s~~~I 41 (118)
T 2of5_H 14 SNLLSVAGRLGLDWPAVALHL-GVSYREV 41 (118)
T ss_dssp HHHHHHHHTCCTTHHHHHHHT-TCCHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHc-CCCHHHH
Confidence 467778888999999999998 5455544
No 151
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=22.72 E-value=1.4e+02 Score=20.94 Aligned_cols=33 Identities=21% Similarity=0.162 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHhCCchHHHhhhCCCCCHHHHHH
Q 025697 62 EEEERLLASHRIHGNRWAVIARLFPGRTDNAVKN 95 (249)
Q Consensus 62 EED~~Llelv~~~G~~Ws~IA~~lpgRT~~~ckn 95 (249)
-|...|.+++..+|++.+..|+.| |=+...+..
T Consensus 51 ~E~~~i~~aL~~~~gn~~~aA~~L-GIsr~tL~r 83 (91)
T 1ntc_A 51 LERTLLTTALRHTQGHKQEAARLL-GWGAATLTA 83 (91)
T ss_dssp HHHHHHHHHHHHTTTCTTHHHHHT-TCCHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHH-CcCHHHHHH
Confidence 466778889999999999999999 556555543
No 152
>2o71_A Death domain-containing protein cradd; raidd, apoptosis; 2.00A {Homo sapiens}
Probab=22.56 E-value=1e+02 Score=23.26 Aligned_cols=27 Identities=11% Similarity=0.302 Sum_probs=20.1
Q ss_pred HHHHHHHHhCCchHHHhhhCCCCCHHHH
Q 025697 66 RLLASHRIHGNRWAVIARLFPGRTDNAV 93 (249)
Q Consensus 66 ~Llelv~~~G~~Ws~IA~~lpgRT~~~c 93 (249)
.|..++...|..|..+|+.| |=+..+|
T Consensus 26 ~l~~Ia~~LG~~Wk~LAR~L-Glse~dI 52 (115)
T 2o71_A 26 QINQLAQRLGPEWEPMVLSL-GLSQTDI 52 (115)
T ss_dssp HHHHHHHHCCTTHHHHHHHT-TCCHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHc-CCCHHHH
Confidence 45666788999999999998 4444443
No 153
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=22.31 E-value=1.9e+02 Score=20.86 Aligned_cols=46 Identities=17% Similarity=0.169 Sum_probs=34.2
Q ss_pred CCCCCHHHHHHHHHHHHHhCCchHHHhhhCCCCCHHHHHHHHHHHHHHH
Q 025697 56 RSPFTEEEEERLLASHRIHGNRWAVIARLFPGRTDNAVKNHWHVIMARR 104 (249)
Q Consensus 56 kg~WT~EED~~Llelv~~~G~~Ws~IA~~lpgRT~~~cknrW~~~lkr~ 104 (249)
....|+.|-+.|. ++ ..|-.-.+||..| |-+...|+.+...++++.
T Consensus 32 ~~~Lt~re~~Vl~-l~-~~G~s~~EIA~~L-~iS~~TV~~~l~ri~~KL 77 (99)
T 1p4w_A 32 DKRLSPKESEVLR-LF-AEGFLVTEIAKKL-NRSIKTISSQKKSAMMKL 77 (99)
T ss_dssp SSSCCHHHHHHHH-HH-HHTCCHHHHHHHH-TSCHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHH-HH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 3456777776654 43 3688899999999 779999999887766543
No 154
>2of5_A Death domain-containing protein cradd; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=21.56 E-value=98 Score=23.31 Aligned_cols=27 Identities=11% Similarity=0.302 Sum_probs=20.1
Q ss_pred HHHHHHHHhCCchHHHhhhCCCCCHHHH
Q 025697 66 RLLASHRIHGNRWAVIARLFPGRTDNAV 93 (249)
Q Consensus 66 ~Llelv~~~G~~Ws~IA~~lpgRT~~~c 93 (249)
.|..++...|..|..+|+.| |=+..+|
T Consensus 26 ~l~~Ia~~lG~~Wk~LAR~L-Glse~dI 52 (114)
T 2of5_A 26 QINQLAQRLGPEWEPMVLSL-GLSQTDI 52 (114)
T ss_dssp HHHHHHHTCCSTHHHHHHTT-TCCHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHc-CCCHHHH
Confidence 45566788999999999998 4454444
No 155
>3eyi_A Z-DNA-binding protein 1; alternative splicing, DNA-binding, polymorphism, DNA binding protein/Z-DNA complex, DNA binding protein/DNA complex; 1.45A {Homo sapiens} PDB: 2l4m_A
Probab=20.98 E-value=83 Score=22.18 Aligned_cols=38 Identities=21% Similarity=0.350 Sum_probs=31.2
Q ss_pred CCHHHHHHHHHHHHHHCCCChhHhhHHhcCCChhhhhh
Q 025697 7 WRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRL 44 (249)
Q Consensus 7 WT~EED~~L~~~V~~~G~~~W~~IA~~l~~Rt~~qcr~ 44 (249)
.|..-++++..+....|+..=-.||+.|+-|+.+++-.
T Consensus 7 ls~~~ee~I~~fL~~~Gp~~AL~IAK~LGlktAK~VNp 44 (72)
T 3eyi_A 7 FSQQREEDIYRFLKDNGPQRALVIAQALGMRTAKDVNR 44 (72)
T ss_dssp CSSHHHHHHHHHHHHHCSEEHHHHHHHTTCCSGGGTHH
T ss_pred hhhhhHHHHHHHHHHcCCchHHHHHHHhCcchhhhcCH
Confidence 34555777888889999888899999999999998743
No 156
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=20.86 E-value=1.8e+02 Score=21.43 Aligned_cols=42 Identities=17% Similarity=0.094 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHhCCchHHHhhhCCCCCHHHHHHHHHHHHHHH
Q 025697 62 EEEERLLASHRIHGNRWAVIARLFPGRTDNAVKNHWHVIMARR 104 (249)
Q Consensus 62 EED~~Llelv~~~G~~Ws~IA~~lpgRT~~~cknrW~~~lkr~ 104 (249)
+.+..++.++-..|-.-..||..+ |-|...|+.+.....++.
T Consensus 25 ~~~r~vl~l~y~~g~s~~EIA~~l-giS~~tV~~~l~ra~~kL 66 (113)
T 1s7o_A 25 DKQMNYIELYYADDYSLAEIADEF-GVSRQAVYDNIKRTEKIL 66 (113)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHH-TCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 344556666667788999999999 889999999887665443
No 157
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=20.12 E-value=70 Score=25.09 Aligned_cols=36 Identities=28% Similarity=0.497 Sum_probs=27.0
Q ss_pred hhHhhHHhcCCChhhhhhhhhcccCCCCCCCCCCHHHHHHHHH
Q 025697 27 WNAIAEKLQGRSGKSCRLRWFNQLDPRINRSPFTEEEEERLLA 69 (249)
Q Consensus 27 W~~IA~~l~~Rt~~qcr~Rw~~~L~p~lkkg~WT~EED~~Lle 69 (249)
-..||..+.|+|+.+||..+. + ...+|+||++.+.+
T Consensus 119 c~~va~~i~gkt~eeir~~f~------I-~~d~t~eEe~~ir~ 154 (159)
T 2ast_A 119 CKTVANMIKGKTPEEIRKTFN------I-KNDFTEEEEAQVRK 154 (159)
T ss_dssp HHHHHHHHSSCCHHHHHHHTT------C-CCCSCTTHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHcC------C-CCCCCHHHHHHHHH
Confidence 456888889999999999863 2 23589898887654
No 158
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=20.02 E-value=89 Score=23.79 Aligned_cols=39 Identities=15% Similarity=0.158 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHCCCChhHhhHHhcCCChhhhhhhhhccc
Q 025697 11 EDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQL 50 (249)
Q Consensus 11 ED~~L~~~V~~~G~~~W~~IA~~l~~Rt~~qcr~Rw~~~L 50 (249)
-|..|+.++...|...+..||+.+ |-+...|+.|.....
T Consensus 8 ~~~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l~~L~ 46 (151)
T 2cyy_A 8 IDKKIIKILQNDGKAPLREISKIT-GLAESTIHERIRKLR 46 (151)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHH-CSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHH
Confidence 456777888888888999999998 678888888876653
Done!