BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025700
(249 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q92804|RBP56_HUMAN TATA-binding protein-associated factor 2N OS=Homo sapiens GN=TAF15
PE=1 SV=1
Length = 592
Score = 115 bits (287), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 63/179 (35%), Positives = 90/179 (50%), Gaps = 19/179 (10%)
Query: 5 NGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYED 64
N +++V L G D + E+F IG++K +K+TG+P + LY DK T + KG+ATV+++D
Sbjct: 233 NNTIFVQGLGEGVSTDQVGEFFKQIGIIKTNKKTGKPMINLYTDKDTGKPKGEATVSFDD 292
Query: 65 PHAALAAVEWFNNKDFHGNLIGVFIAESRGKDDHAYNSAAAAGDPTVAGDVSGLDENSRD 124
P +A AA++WF+ K+FHGN+I V A R P
Sbjct: 293 PPSAKAAIDWFDGKEFHGNIIKVSFATRR---------------PEFMRGGGSGGGRRGR 337
Query: 125 VNGFAGRGRGRGDAVGKTWQQDGDWMCPNTSCSNVNFAFRGVCNRCGTARPVGGPGAGG 183
G K+ GDW+CPN SC N+NFA R CN+C RP +GG
Sbjct: 338 GGYRGRGGFQGRGGDPKS----GDWVCPNPSCGNMNFARRNSCNQCNEPRPEDSRPSGG 392
Score = 39.7 bits (91), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
Query: 215 DWSCP--MCGNINWAKRTKCNICNTNKP 240
DW CP CGN+N+A+R CN CN +P
Sbjct: 357 DWVCPNPSCGNMNFARRNSCNQCNEPRP 384
>sp|Q01844|EWS_HUMAN RNA-binding protein EWS OS=Homo sapiens GN=EWSR1 PE=1 SV=1
Length = 656
Score = 108 bits (271), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 68/184 (36%), Positives = 91/184 (49%), Gaps = 18/184 (9%)
Query: 5 NGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYED 64
N ++YV L D LA++F G++K +KRTG+P + +Y DK T + KGDATV+YED
Sbjct: 360 NSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYED 419
Query: 65 PHAALAAVEWFNNKDFHGNLIGVFIAESR--------------GKDDHAYNSAAAAGDPT 110
P A AAVEWF+ KDF G+ + V +A + G+ G
Sbjct: 420 PPTAKAAVEWFDGKDFQGSKLKVSLARKKPPMNSMRGGLPPREGRGMPPPLRGGPGGPGG 479
Query: 111 VAGDVSGLDENSRDVNGFAGRG----RGRGDAVGKTWQQDGDWMCPNTSCSNVNFAFRGV 166
G + + D GF RG RG G + GDW CPN C N NFA+R
Sbjct: 480 PGGPMGRMGGRGGDRGGFPPRGPRGSRGNPSGGGNVQHRAGDWQCPNPGCGNQNFAWRTE 539
Query: 167 CNRC 170
CN+C
Sbjct: 540 CNQC 543
Score = 35.0 bits (79), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Query: 215 DWSCPM--CGNINWAKRTKCNICNTNK 239
DW CP CGN N+A RT+CN C K
Sbjct: 521 DWQCPNPGCGNQNFAWRTECNQCKAPK 547
>sp|Q61545|EWS_MOUSE RNA-binding protein EWS OS=Mus musculus GN=Ewsr1 PE=1 SV=2
Length = 655
Score = 108 bits (270), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 68/184 (36%), Positives = 91/184 (49%), Gaps = 18/184 (9%)
Query: 5 NGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYED 64
N ++YV L D LA++F G++K +KRTG+P + +Y DK T + KGDATV+YED
Sbjct: 359 NSAIYVQGLNDNVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYED 418
Query: 65 PHAALAAVEWFNNKDFHGNLIGVFIAESR--------------GKDDHAYNSAAAAGDPT 110
P A AAVEWF+ KDF G+ + V +A + G+ G
Sbjct: 419 PPTAKAAVEWFDGKDFQGSKLKVSLARKKPPMNSMRGGMPPREGRGMPPPLRGGPGGPGG 478
Query: 111 VAGDVSGLDENSRDVNGFAGRG----RGRGDAVGKTWQQDGDWMCPNTSCSNVNFAFRGV 166
G + + D GF RG RG G + GDW CPN C N NFA+R
Sbjct: 479 PGGPMGRMGGRGGDRGGFPPRGPRGSRGNPSGGGNVQHRAGDWQCPNPGCGNQNFAWRTE 538
Query: 167 CNRC 170
CN+C
Sbjct: 539 CNQC 542
Score = 34.7 bits (78), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 25/52 (48%), Gaps = 9/52 (17%)
Query: 190 RGRAGNESGSQGRQIGAATGLFGPNDWSCPM--CGNINWAKRTKCNICNTNK 239
RG GN SG Q A DW CP CGN N+A RT+CN C K
Sbjct: 502 RGSRGNPSGGGNVQHRAG-------DWQCPNPGCGNQNFAWRTECNQCKAPK 546
>sp|P56959|FUS_MOUSE RNA-binding protein FUS OS=Mus musculus GN=Fus PE=2 SV=1
Length = 518
Score = 103 bits (256), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 59/166 (35%), Positives = 89/166 (53%), Gaps = 2/166 (1%)
Query: 5 NGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYED 64
N +++V L + +A+YF IG++K +K+TG+P + LY D+ T + KG+ATV+++D
Sbjct: 277 NNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDD 336
Query: 65 PHAALAAVEWFNNKDFHGNLIGVFIAESRGKDDHAYNSAAAAGDPTVAGDVSGLDENSRD 124
P +A AA++WF+ K+F GN I V A R D G G +
Sbjct: 337 PPSAKAAIDWFDGKEFSGNPIKVSFATRRA--DFNRGGGNGRGGRGRGGPMGRGGYGGGG 394
Query: 125 VNGFAGRGRGRGDAVGKTWQQDGDWMCPNTSCSNVNFAFRGVCNRC 170
G G G G Q+ GDW CPN +C N+NF++R CN+C
Sbjct: 395 SGGGGRGGFPSGGGGGGGQQRAGDWKCPNPTCENMNFSWRNECNQC 440
>sp|Q28009|FUS_BOVIN RNA-binding protein FUS OS=Bos taurus GN=FUS PE=2 SV=2
Length = 513
Score = 103 bits (256), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 59/166 (35%), Positives = 89/166 (53%), Gaps = 2/166 (1%)
Query: 5 NGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYED 64
N +++V L + +A+YF IG++K +K+TG+P + LY D+ T + KG+ATV+++D
Sbjct: 271 NNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDD 330
Query: 65 PHAALAAVEWFNNKDFHGNLIGVFIAESRGKDDHAYNSAAAAGDPTVAGDVSGLDENSRD 124
P +A AA++WF+ K+F GN I V A R D G G +
Sbjct: 331 PPSAKAAIDWFDGKEFSGNPIKVSFATRRA--DFNRGGGNGRGGRGRGGPMGRGGYGGGG 388
Query: 125 VNGFAGRGRGRGDAVGKTWQQDGDWMCPNTSCSNVNFAFRGVCNRC 170
G G G G Q+ GDW CPN +C N+NF++R CN+C
Sbjct: 389 SGGGGRGGFPSGGGGGGGQQRAGDWKCPNPTCENMNFSWRNECNQC 434
>sp|P35637|FUS_HUMAN RNA-binding protein FUS OS=Homo sapiens GN=FUS PE=1 SV=1
Length = 526
Score = 102 bits (255), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 59/166 (35%), Positives = 89/166 (53%), Gaps = 2/166 (1%)
Query: 5 NGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYED 64
N +++V L + +A+YF IG++K +K+TG+P + LY D+ T + KG+ATV+++D
Sbjct: 284 NNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDD 343
Query: 65 PHAALAAVEWFNNKDFHGNLIGVFIAESRGKDDHAYNSAAAAGDPTVAGDVSGLDENSRD 124
P +A AA++WF+ K+F GN I V A R D G G +
Sbjct: 344 PPSAKAAIDWFDGKEFSGNPIKVSFATRRA--DFNRGGGNGRGGRGRGGPMGRGGYGGGG 401
Query: 125 VNGFAGRGRGRGDAVGKTWQQDGDWMCPNTSCSNVNFAFRGVCNRC 170
G G G G Q+ GDW CPN +C N+NF++R CN+C
Sbjct: 402 SGGGGRGGFPSGGGGGGGQQRAGDWKCPNPTCENMNFSWRNECNQC 447
>sp|Q5ZLX5|ZRAB2_CHICK Zinc finger Ran-binding domain-containing protein 2 OS=Gallus
gallus GN=ZRANB2 PE=2 SV=1
Length = 334
Score = 89.0 bits (219), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 44/94 (46%), Positives = 54/94 (57%), Gaps = 11/94 (11%)
Query: 146 DGDWMCPNTSCSNVNFAFRGVCNRCGTARPVGGPGAGGRAGGRGRGRAGNESGSQGRQIG 205
DGDW+CP+ C NVNFA R CNRCG R +AGG G+ E
Sbjct: 10 DGDWICPDKKCGNVNFARRTSCNRCG--REKTTEAKMMKAGGTEIGKTLAEK-------- 59
Query: 206 AATGLFGPNDWSCPMCGNINWAKRTKCNICNTNK 239
+ GLF NDW C CGN+NWA+R++CN+CNT K
Sbjct: 60 -SRGLFSANDWQCKTCGNVNWARRSECNMCNTPK 92
Score = 30.8 bits (68), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 9/59 (15%)
Query: 136 GDAVGKTWQQDG-------DWMCPNTSCSNVNFAFRGVCNRCGTARPVGGPGAGGRAGG 187
G +GKT + DW C +C NVN+A R CN C T + G GG
Sbjct: 49 GTEIGKTLAEKSRGLFSANDWQCK--TCGNVNWARRSECNMCNTPKYAKLEERTGYGGG 105
>sp|O95218|ZRAB2_HUMAN Zinc finger Ran-binding domain-containing protein 2 OS=Homo sapiens
GN=ZRANB2 PE=1 SV=2
Length = 330
Score = 87.8 bits (216), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 43/94 (45%), Positives = 53/94 (56%), Gaps = 11/94 (11%)
Query: 146 DGDWMCPNTSCSNVNFAFRGVCNRCGTARPVGGPGAGGRAGGRGRGRAGNESGSQGRQIG 205
DGDW+CP+ C NVNFA R CNRCG R +AGG G+ E
Sbjct: 10 DGDWICPDKKCGNVNFARRTSCNRCG--REKTTEAKMMKAGGTEIGKTLAEK-------- 59
Query: 206 AATGLFGPNDWSCPMCGNINWAKRTKCNICNTNK 239
+ GLF NDW C C N+NWA+R++CN+CNT K
Sbjct: 60 -SRGLFSANDWQCKTCSNVNWARRSECNMCNTPK 92
Score = 33.5 bits (75), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 26/59 (44%), Gaps = 9/59 (15%)
Query: 136 GDAVGKTWQQDG-------DWMCPNTSCSNVNFAFRGVCNRCGTARPVGGPGAGGRAGG 187
G +GKT + DW C +CSNVN+A R CN C T + G GG
Sbjct: 49 GTEIGKTLAEKSRGLFSANDWQCK--TCSNVNWARRSECNMCNTPKYAKLEERTGYGGG 105
>sp|O35986|ZRAB2_RAT Zinc finger Ran-binding domain-containing protein 2 OS=Rattus
norvegicus GN=Zranb2 PE=2 SV=2
Length = 330
Score = 87.8 bits (216), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 43/94 (45%), Positives = 53/94 (56%), Gaps = 11/94 (11%)
Query: 146 DGDWMCPNTSCSNVNFAFRGVCNRCGTARPVGGPGAGGRAGGRGRGRAGNESGSQGRQIG 205
DGDW+CP+ C NVNFA R CNRCG R +AGG G+ E
Sbjct: 10 DGDWICPDKKCGNVNFARRTSCNRCG--REKTTEAKMMKAGGTEIGKTLAEK-------- 59
Query: 206 AATGLFGPNDWSCPMCGNINWAKRTKCNICNTNK 239
+ GLF NDW C C N+NWA+R++CN+CNT K
Sbjct: 60 -SRGLFSANDWQCKTCSNVNWARRSECNMCNTPK 92
Score = 33.1 bits (74), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 26/59 (44%), Gaps = 9/59 (15%)
Query: 136 GDAVGKTWQQDG-------DWMCPNTSCSNVNFAFRGVCNRCGTARPVGGPGAGGRAGG 187
G +GKT + DW C +CSNVN+A R CN C T + G GG
Sbjct: 49 GTEIGKTLAEKSRGLFSANDWQCK--TCSNVNWARRSECNMCNTPKYAKLEERTGYGGG 105
>sp|Q9R020|ZRAB2_MOUSE Zinc finger Ran-binding domain-containing protein 2 OS=Mus musculus
GN=Zranb2 PE=1 SV=2
Length = 330
Score = 87.8 bits (216), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 43/94 (45%), Positives = 53/94 (56%), Gaps = 11/94 (11%)
Query: 146 DGDWMCPNTSCSNVNFAFRGVCNRCGTARPVGGPGAGGRAGGRGRGRAGNESGSQGRQIG 205
DGDW+CP+ C NVNFA R CNRCG R +AGG G+ E
Sbjct: 10 DGDWICPDKKCGNVNFARRTSCNRCG--REKTTEAKMMKAGGTEIGKTLAEK-------- 59
Query: 206 AATGLFGPNDWSCPMCGNINWAKRTKCNICNTNK 239
+ GLF NDW C C N+NWA+R++CN+CNT K
Sbjct: 60 -SRGLFSANDWQCKTCSNVNWARRSECNMCNTPK 92
Score = 33.1 bits (74), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 26/59 (44%), Gaps = 9/59 (15%)
Query: 136 GDAVGKTWQQDG-------DWMCPNTSCSNVNFAFRGVCNRCGTARPVGGPGAGGRAGG 187
G +GKT + DW C +CSNVN+A R CN C T + G GG
Sbjct: 49 GTEIGKTLAEKSRGLFSANDWQCK--TCSNVNWARRSECNMCNTPKYAKLEERTGYGGG 105
>sp|Q5R580|ZRAB2_PONAB Zinc finger Ran-binding domain-containing protein 2 OS=Pongo abelii
GN=ZRANB2 PE=2 SV=1
Length = 320
Score = 87.4 bits (215), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 43/94 (45%), Positives = 53/94 (56%), Gaps = 11/94 (11%)
Query: 146 DGDWMCPNTSCSNVNFAFRGVCNRCGTARPVGGPGAGGRAGGRGRGRAGNESGSQGRQIG 205
DGDW+CP+ C NVNFA R CNRCG R +AGG G+ E
Sbjct: 10 DGDWICPDKKCGNVNFARRTSCNRCG--REKTTEAKMMKAGGTEIGKTLAEK-------- 59
Query: 206 AATGLFGPNDWSCPMCGNINWAKRTKCNICNTNK 239
+ GLF NDW C C N+NWA+R++CN+CNT K
Sbjct: 60 -SRGLFSANDWQCKTCSNVNWARRSECNMCNTPK 92
Score = 33.1 bits (74), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 26/59 (44%), Gaps = 9/59 (15%)
Query: 136 GDAVGKTWQQDG-------DWMCPNTSCSNVNFAFRGVCNRCGTARPVGGPGAGGRAGG 187
G +GKT + DW C +CSNVN+A R CN C T + G GG
Sbjct: 49 GTEIGKTLAEKSRGLFSANDWQCK--TCSNVNWARRSECNMCNTPKYAKLEERTGYGGG 105
>sp|Q19QU3|ZRAB2_PIG Zinc finger Ran-binding domain-containing protein 2 OS=Sus scrofa
GN=ZRANB2 PE=2 SV=1
Length = 328
Score = 87.4 bits (215), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 43/94 (45%), Positives = 53/94 (56%), Gaps = 11/94 (11%)
Query: 146 DGDWMCPNTSCSNVNFAFRGVCNRCGTARPVGGPGAGGRAGGRGRGRAGNESGSQGRQIG 205
DGDW+CP+ C NVNFA R CNRCG R +AGG G+ E
Sbjct: 10 DGDWICPDKKCGNVNFARRTSCNRCG--REKTTEAKMMKAGGTEIGKTLAEK-------- 59
Query: 206 AATGLFGPNDWSCPMCGNINWAKRTKCNICNTNK 239
+ GLF NDW C C N+NWA+R++CN+CNT K
Sbjct: 60 -SRGLFSANDWQCKTCSNVNWARRSECNMCNTPK 92
Score = 33.1 bits (74), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 26/59 (44%), Gaps = 9/59 (15%)
Query: 136 GDAVGKTWQQDG-------DWMCPNTSCSNVNFAFRGVCNRCGTARPVGGPGAGGRAGG 187
G +GKT + DW C +CSNVN+A R CN C T + G GG
Sbjct: 49 GTEIGKTLAEKSRGLFSANDWQCK--TCSNVNWARRSECNMCNTPKYAKLEERTGYGGG 105
>sp|Q8GZ43|YZR3_ARATH RanBP2-type zinc finger protein At1g67325 OS=Arabidopsis thaliana
GN=At1g67325 PE=1 SV=1
Length = 288
Score = 58.5 bits (140), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 49/106 (46%), Gaps = 26/106 (24%)
Query: 145 QDGDWMCPNTSCSNVNFAFRGVCN--RCGTARPVGGPGAGGRAGGRGRGRAGNESGSQGR 202
+D DW CPN C NVNF+FR VCN +C T +P G++ G
Sbjct: 194 RDNDWTCPN--CGNVNFSFRTVCNMRKCNTPKP------------------GSQQGGSSD 233
Query: 203 QIGAATGLFGPNDWSCPMCGNINWAKRTKCNI--CNTNKPGHNEGG 246
+I G W C CGNIN+ R+KCN C +KPG G
Sbjct: 234 KISKQNAPEG--SWKCDNCGNINYPFRSKCNRQNCGADKPGDRSNG 277
Score = 38.1 bits (87), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 20/27 (74%)
Query: 214 NDWSCPMCGNINWAKRTKCNICNTNKP 240
+DW CP CGN+N++ RT CN+ N +P
Sbjct: 24 DDWICPSCGNVNFSFRTTCNMRNCTQP 50
Score = 36.6 bits (83), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 4/35 (11%)
Query: 144 QQDGDWMCPNTSCSNVNFAFRGVCN--RCGTARPV 176
+++ DW+CP SC NVNF+FR CN C RP
Sbjct: 21 RREDDWICP--SCGNVNFSFRTTCNMRNCTQPRPA 53
Score = 36.2 bits (82), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Query: 134 GRGDAVGKTWQQDGDWMCPNTSCSNVNFAFRGVCNR--CGTARP 175
G D + K +G W C N C N+N+ FR CNR CG +P
Sbjct: 230 GSSDKISKQNAPEGSWKCDN--CGNINYPFRSKCNRQNCGADKP 271
>sp|Q29RT0|RBMX_BOVIN RNA-binding motif protein, X chromosome OS=Bos taurus GN=RBMX
PE=2 SV=1
Length = 396
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 40/85 (47%), Gaps = 8/85 (9%)
Query: 6 GSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDP 65
G +++ L TDE L FG G + + V L +D+ TN+ +G A +T+E P
Sbjct: 8 GKLFIGGLNLETDEKSLEATFGKYGRISE--------VLLMKDRETNKSRGFAFITFESP 59
Query: 66 HAALAAVEWFNNKDFHGNLIGVFIA 90
A AAV N K G I V A
Sbjct: 60 ADAKAAVRDMNGKSLDGKAIKVAQA 84
>sp|Q7ZWA3|RBMX_DANRE RNA-binding motif protein, X chromosome OS=Danio rerio GN=rbmx
PE=2 SV=1
Length = 379
Score = 44.7 bits (104), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 39/85 (45%), Gaps = 8/85 (9%)
Query: 6 GSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDP 65
G +++ L T E +L YF G + + V L +D+ TN+ +G A VTYE+P
Sbjct: 8 GKLFIGGLNTETSEKVLEAYFSKFGRISE--------VLLMKDRETNKSRGFAFVTYENP 59
Query: 66 HAALAAVEWFNNKDFHGNLIGVFIA 90
A A N K G I V A
Sbjct: 60 GDAKDAAREMNGKPLDGKPIKVEQA 84
>sp|Q4R813|RMXL2_MACFA RNA-binding motif protein, X-linked-like-2 OS=Macaca fascicularis
GN=RBMXL2 PE=2 SV=1
Length = 394
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 39/85 (45%), Gaps = 8/85 (9%)
Query: 6 GSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDP 65
G +++ L TDE L FG G + + V L +D+ TN+ +G A VT+E P
Sbjct: 8 GKLFIGGLNLETDEKALEAEFGKYGRIVE--------VLLMKDRETNKSRGFAFVTFESP 59
Query: 66 HAALAAVEWFNNKDFHGNLIGVFIA 90
A AA N K G I V A
Sbjct: 60 ANAKAAARDMNGKSLDGKAIKVAQA 84
>sp|P53830|CUS2_YEAST Cold sensitive U2 snRNA suppressor 2 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=CUS2 PE=1 SV=1
Length = 285
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 47/94 (50%), Gaps = 5/94 (5%)
Query: 5 NGSVYVCNLP-HGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLY-RDKTTNEYKGDATVTY 62
N S+Y+ LP T ++ L E F G+++ + R G P LY DK +KGDA +TY
Sbjct: 44 NTSIYISGLPTDKTTKEGLTEQFCKYGMIRTN-RDGEPLCKLYVNDKGA--FKGDALITY 100
Query: 63 EDPHAALAAVEWFNNKDFHGNLIGVFIAESRGKD 96
+ A+E N F G I V A+ + K+
Sbjct: 101 SKEESVTLAIEMMNESIFLGKQIRVERAQFQNKE 134
>sp|O75526|RMXL2_HUMAN RNA-binding motif protein, X-linked-like-2 OS=Homo sapiens
GN=RBMXL2 PE=1 SV=3
Length = 392
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 39/85 (45%), Gaps = 8/85 (9%)
Query: 6 GSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDP 65
G +++ L TDE L FG G + + V L +D+ TN+ +G A VT+E P
Sbjct: 8 GKLFIGGLNLETDEKALEAEFGKYGRIVE--------VLLMKDRETNKSRGFAFVTFESP 59
Query: 66 HAALAAVEWFNNKDFHGNLIGVFIA 90
A AA N K G I V A
Sbjct: 60 ADAKAAARDMNGKSLDGKAIKVAQA 84
>sp|Q499V6|ZCRB1_RAT Zinc finger CCHC-type and RNA-binding motif-containing protein 1
OS=Rattus norvegicus GN=Zcrb1 PE=2 SV=1
Length = 217
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 41/95 (43%), Gaps = 8/95 (8%)
Query: 1 MTMANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATV 60
+ + +VYV NLP + L F G + KV + +DK T + KG A +
Sbjct: 5 LAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKV--------VKVTIMKDKDTRKSKGVAFI 56
Query: 61 TYEDPHAALAAVEWFNNKDFHGNLIGVFIAESRGK 95
+ D +AL NNK G +I IA G+
Sbjct: 57 LFLDKDSALNCTRAINNKQLFGRVIKASIAIDNGR 91
>sp|P0C8Z4|RMXL3_PANTR RNA-binding motif protein, X-linked-like-3 OS=Pan troglodytes
GN=RBMXL3 PE=4 SV=1
Length = 992
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 8 VYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHA 67
++V L TDE L FG G + K V+L +D+ TN+ +G A VT+E P
Sbjct: 10 LFVGGLNLKTDEKALKAEFGKYGHIIK--------VFLIKDRKTNKSRGFAFVTFESPAD 61
Query: 68 ALAAVEWFNNKDFHGNLIGV 87
A AA N K G I V
Sbjct: 62 AKAAARDMNGKYLDGKAIMV 81
>sp|Q8N7X1|RMXL3_HUMAN RNA-binding motif protein, X-linked-like-3 OS=Homo sapiens
GN=RBMXL3 PE=2 SV=2
Length = 1067
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 8 VYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHA 67
+++ L TDE L FG G + K V+L +D+ TN+ +G A VT+E P
Sbjct: 10 LFIGGLNLKTDEKALKAEFGKYGHIIK--------VFLMKDRKTNKSRGFAFVTFESPAD 61
Query: 68 ALAAVEWFNNKDFHGNLIGV 87
A AA N K G I V
Sbjct: 62 AKAAARDMNGKYLDGKAIMV 81
>sp|Q9CZ96|ZCRB1_MOUSE Zinc finger CCHC-type and RNA-binding motif-containing protein 1
OS=Mus musculus GN=Zcrb1 PE=1 SV=1
Length = 217
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 41/95 (43%), Gaps = 8/95 (8%)
Query: 1 MTMANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATV 60
+ + +VYV NLP + L F G + KV + +DK T + KG A +
Sbjct: 5 LAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKV--------VKVTIMKDKDTRKSKGVAFI 56
Query: 61 TYEDPHAALAAVEWFNNKDFHGNLIGVFIAESRGK 95
+ D +AL NNK G +I IA G+
Sbjct: 57 LFLDKDSALNCTRAINNKQLFGRVIKASIAIDNGR 91
>sp|Q4PC17|MRD1_USTMA Multiple RNA-binding domain-containing protein 1 OS=Ustilago maydis
(strain 521 / FGSC 9021) GN=MRD1 PE=3 SV=1
Length = 858
Score = 42.7 bits (99), Expect = 0.002, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 8/91 (8%)
Query: 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTY 62
M +G +++ NLP D + +F + G +K+ V + DK T KG A V++
Sbjct: 311 MESGRLFIRNLPFAASGDEILAFFESFGTVKQ--------VHIPLDKQTKASKGLAFVSF 362
Query: 63 EDPHAALAAVEWFNNKDFHGNLIGVFIAESR 93
DP ALAA + F G L+ + A ++
Sbjct: 363 SDPAHALAAYRAKDGSTFQGRLLHLLPAVNK 393
>sp|P0DJD4|RBY1C_HUMAN RNA-binding motif protein, Y chromosome, family 1 member C
OS=Homo sapiens GN=RBMY1C PE=1 SV=1
Length = 496
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 9/86 (10%)
Query: 6 GSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDP 65
G +++ L T+E ML FG G + + V L +D+T+ +G A +T+E+P
Sbjct: 8 GKLFIGGLNRETNEKMLKAVFGKHGPISE--------VLLIKDRTSKS-RGFAFITFENP 58
Query: 66 HAALAAVEWFNNKDFHGNLIGVFIAE 91
A A + N K HG I V A+
Sbjct: 59 ADAKNAAKDMNGKSLHGKAIKVEQAQ 84
>sp|P0C7P1|RBY1D_HUMAN RNA-binding motif protein, Y chromosome, family 1 member D
OS=Homo sapiens GN=RBMY1D PE=2 SV=1
Length = 496
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 9/86 (10%)
Query: 6 GSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDP 65
G +++ L T+E ML FG G + + V L +D+T+ +G A +T+E+P
Sbjct: 8 GKLFIGGLNRETNEKMLKAVFGKHGPISE--------VLLIKDRTSKS-RGFAFITFENP 58
Query: 66 HAALAAVEWFNNKDFHGNLIGVFIAE 91
A A + N K HG I V A+
Sbjct: 59 ADAKNAAKDMNGKSLHGKAIKVEQAK 84
>sp|A6NEQ0|RBY1E_HUMAN RNA-binding motif protein, Y chromosome, family 1 member E
OS=Homo sapiens GN=RBMY1E PE=2 SV=1
Length = 496
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 9/86 (10%)
Query: 6 GSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDP 65
G +++ L T+E ML FG G + + V L +D+T+ +G A +T+E+P
Sbjct: 8 GKLFIGGLNRETNEKMLKAVFGKHGPISE--------VLLIKDRTSKS-RGFAFITFENP 58
Query: 66 HAALAAVEWFNNKDFHGNLIGVFIAE 91
A A + N K HG I V A+
Sbjct: 59 ADAKNAAKDMNGKSLHGKAIKVEQAK 84
>sp|P0DJD3|RBY1A_HUMAN RNA-binding motif protein, Y chromosome, family 1 member A1
OS=Homo sapiens GN=RBMY1A1 PE=1 SV=1
Length = 496
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 9/86 (10%)
Query: 6 GSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDP 65
G +++ L T+E ML FG G + + V L +D+T+ +G A +T+E+P
Sbjct: 8 GKLFIGGLNRETNEKMLKAVFGKHGPISE--------VLLIKDRTSKS-RGFAFITFENP 58
Query: 66 HAALAAVEWFNNKDFHGNLIGVFIAE 91
A A + N K HG I V A+
Sbjct: 59 ADAKNAAKDMNGKSLHGKAIKVEQAK 84
>sp|A6NDE4|RBY1B_HUMAN RNA-binding motif protein, Y chromosome, family 1 member B
OS=Homo sapiens GN=RBMY1B PE=2 SV=2
Length = 496
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 9/86 (10%)
Query: 6 GSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDP 65
G +++ L T+E ML FG G + + V L +D+T+ +G A +T+E+P
Sbjct: 8 GKLFIGGLNRETNEKMLKAVFGKHGPISE--------VLLIKDRTSKS-RGFAFITFENP 58
Query: 66 HAALAAVEWFNNKDFHGNLIGVFIAE 91
A A + N K HG I V A+
Sbjct: 59 ADAKNAAKDMNGKSLHGKAIKVEQAK 84
>sp|P53927|NOP15_YEAST Ribosome biogenesis protein 15 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=NOP15 PE=1 SV=1
Length = 220
Score = 41.2 bits (95), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 44/97 (45%), Gaps = 8/97 (8%)
Query: 5 NGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYED 64
+G +YV LPHG E L++YF G LK +V L R+K T + + + +
Sbjct: 90 SGIIYVSRLPHGFHEKELSKYFAQFGDLK--------EVRLARNKKTGNSRHYGFLEFVN 141
Query: 65 PHAALAAVEWFNNKDFHGNLIGVFIAESRGKDDHAYN 101
A+ A E NN G+L+ V + K + Y
Sbjct: 142 KEDAMIAQESMNNYLLMGHLLQVRVLPKGAKIEKLYK 178
>sp|A8NS61|EIF3G_BRUMA Eukaryotic translation initiation factor 3 subunit G OS=Brugia
malayi GN=Bm1_08615 PE=3 SV=1
Length = 287
Score = 41.2 bits (95), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 35/67 (52%), Gaps = 8/67 (11%)
Query: 10 VCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAAL 69
V NLP DE L FGT+G + + V++ +DK TN+ KG A VT+E
Sbjct: 212 VTNLPEECDEMELRALFGTVGTVNR--------VFIAKDKHTNKPKGFAFVTFEHRSQTE 263
Query: 70 AAVEWFN 76
AA++ N
Sbjct: 264 AAIQKLN 270
>sp|Q9H0L4|CSTFT_HUMAN Cleavage stimulation factor subunit 2 tau variant OS=Homo sapiens
GN=CSTF2T PE=1 SV=1
Length = 616
Score = 40.4 bits (93), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 45/100 (45%), Gaps = 8/100 (8%)
Query: 7 SVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPH 66
SV+V N+P+ E+ L + F +G + + L D+ T + KG Y+D
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGSVVSFR--------LVYDRETGKPKGYGFCEYQDQE 68
Query: 67 AALAAVEWFNNKDFHGNLIGVFIAESRGKDDHAYNSAAAA 106
AL+A+ N ++F G + V A S + + AA
Sbjct: 69 TALSAMRNLNGREFSGRALRVDNAASEKNKEELKSLGPAA 108
>sp|Q6DJI9|ZCRB1_XENLA Zinc finger CCHC-type and RNA-binding motif-containing protein 1
OS=Xenopus laevis GN=zcrb1 PE=2 SV=1
Length = 218
Score = 40.4 bits (93), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 41/95 (43%), Gaps = 8/95 (8%)
Query: 1 MTMANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATV 60
+ + +VYV NLP + L F G + KV + +DK + + KG + V
Sbjct: 5 LAPSKSTVYVSNLPFSLTNNDLHRIFSKYGKV--------VKVTILKDKDSRKSKGVSFV 56
Query: 61 TYEDPHAALAAVEWFNNKDFHGNLIGVFIAESRGK 95
+ D +A V NNK G I IA+ G+
Sbjct: 57 LFLDKESAQNCVRGLNNKQLFGRAIKASIAKDNGR 91
>sp|Q5RDA3|CSTF2_PONAB Cleavage stimulation factor subunit 2 OS=Pongo abelii GN=CSTF2
PE=2 SV=1
Length = 577
Score = 40.4 bits (93), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 8/81 (9%)
Query: 7 SVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPH 66
SV+V N+P+ E+ L + F +G + + L D+ T + KG Y+D
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFR--------LVYDRETGKPKGYGFCEYQDQE 68
Query: 67 AALAAVEWFNNKDFHGNLIGV 87
AL+A+ N ++F G + V
Sbjct: 69 TALSAMRNLNGREFSGRALRV 89
>sp|P33240|CSTF2_HUMAN Cleavage stimulation factor subunit 2 OS=Homo sapiens GN=CSTF2
PE=1 SV=1
Length = 577
Score = 40.4 bits (93), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 8/81 (9%)
Query: 7 SVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPH 66
SV+V N+P+ E+ L + F +G + + L D+ T + KG Y+D
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFR--------LVYDRETGKPKGYGFCEYQDQE 68
Query: 67 AALAAVEWFNNKDFHGNLIGV 87
AL+A+ N ++F G + V
Sbjct: 69 TALSAMRNLNGREFSGRALRV 89
>sp|Q8BIQ5|CSTF2_MOUSE Cleavage stimulation factor subunit 2 OS=Mus musculus GN=Cstf2
PE=1 SV=2
Length = 580
Score = 40.4 bits (93), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 8/81 (9%)
Query: 7 SVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPH 66
SV+V N+P+ E+ L + F +G + + L D+ T + KG Y+D
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFR--------LVYDRETGKPKGYGFCEYQDQE 68
Query: 67 AALAAVEWFNNKDFHGNLIGV 87
AL+A+ N ++F G + V
Sbjct: 69 TALSAMRNLNGREFSGRALRV 89
>sp|Q8HXM1|CSTF2_BOVIN Cleavage stimulation factor subunit 2 OS=Bos taurus GN=CSTF2 PE=2
SV=1
Length = 572
Score = 40.0 bits (92), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 8/81 (9%)
Query: 7 SVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPH 66
SV+V N+P+ E+ L + F +G + + L D+ T + KG Y+D
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFR--------LVYDRETGKPKGYGFCEYQDQE 68
Query: 67 AALAAVEWFNNKDFHGNLIGV 87
AL+A+ N ++F G + V
Sbjct: 69 TALSAMRNLNGREFSGRALRV 89
>sp|Q27294|CAZ_DROME RNA-binding protein cabeza OS=Drosophila melanogaster GN=caz PE=2
SV=2
Length = 399
Score = 40.0 bits (92), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 21/30 (70%), Gaps = 2/30 (6%)
Query: 145 QDGDWMCPNTSCSNVNFAFRGVCNRCGTAR 174
+DGDW C SC+N NFA+R CNRC T +
Sbjct: 275 RDGDWKC--NSCNNTNFAWRNECNRCKTPK 302
Score = 31.6 bits (70), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 215 DWSCPMCGNINWAKRTKCNICNTNK 239
DW C C N N+A R +CN C T K
Sbjct: 278 DWKCNSCNNTNFAWRNECNRCKTPK 302
>sp|O13620|MRD1_SCHPO Multiple RNA-binding domain-containing protein 1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=mrd1 PE=3 SV=1
Length = 833
Score = 40.0 bits (92), Expect = 0.014, Method: Composition-based stats.
Identities = 30/95 (31%), Positives = 45/95 (47%), Gaps = 11/95 (11%)
Query: 8 VYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHA 67
+++ NL + ED L FG G L++ V + DK TN KG A + + D
Sbjct: 325 LFLRNLTYSCAEDDLKSLFGPFGQLEQ--------VHMPIDKKTNNPKGFAYIDFHDADD 376
Query: 68 ALAAVEWFNNKDFHGNLIGVFIAESRGK---DDHA 99
A+ A + K F G L+ V A++R DD+A
Sbjct: 377 AVRAYLELDAKPFQGRLLHVLPAKARSSILLDDYA 411
>sp|Q8TBF4|ZCRB1_HUMAN Zinc finger CCHC-type and RNA-binding motif-containing protein 1
OS=Homo sapiens GN=ZCRB1 PE=1 SV=2
Length = 217
Score = 40.0 bits (92), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 39/92 (42%), Gaps = 8/92 (8%)
Query: 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYE 63
+ +VYV NLP + L F G + KV + +DK T + KG A + +
Sbjct: 8 SKSTVYVSNLPFSLTNNDLYRIFSKYGKV--------VKVTIMKDKDTRKSKGVAFILFL 59
Query: 64 DPHAALAAVEWFNNKDFHGNLIGVFIAESRGK 95
D +A NNK G +I IA G+
Sbjct: 60 DKDSAQNCTRAINNKQLFGRVIKASIAIDNGR 91
>sp|Q9FNR1|RBG3_ARATH Glycine-rich RNA-binding protein 3, mitochondrial OS=Arabidopsis
thaliana GN=RBG3 PE=2 SV=1
Length = 309
Score = 40.0 bits (92), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 8/91 (8%)
Query: 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTY 62
M++ +++ + + DED L E F G + +V L D+ T +G VT+
Sbjct: 37 MSSSKLFIGGMAYSMDEDSLREAFTKYGEVVD------TRVIL--DRETGRSRGFGFVTF 88
Query: 63 EDPHAALAAVEWFNNKDFHGNLIGVFIAESR 93
AA +A++ + +D HG ++ V A R
Sbjct: 89 TSSEAASSAIQALDGRDLHGRVVKVNYANDR 119
>sp|Q8C7E9|CSTFT_MOUSE Cleavage stimulation factor subunit 2 tau variant OS=Mus musculus
GN=Cstf2t PE=1 SV=2
Length = 632
Score = 40.0 bits (92), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 45/100 (45%), Gaps = 8/100 (8%)
Query: 7 SVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPH 66
SV+V N+P+ E+ L + F +G + + L D+ T + KG Y+D
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGSVVSFR--------LVYDRETGKPKGYGFCEYQDQE 68
Query: 67 AALAAVEWFNNKDFHGNLIGVFIAESRGKDDHAYNSAAAA 106
AL+A+ N ++F G + V A S + + AA
Sbjct: 69 TALSAMRNLNGREFSGRALRVDNAASEKNKEELKSLGPAA 108
>sp|Q56JZ7|ZCRB1_BOVIN Zinc finger CCHC-type and RNA-binding motif-containing protein 1
OS=Bos taurus GN=ZCRB1 PE=2 SV=1
Length = 217
Score = 40.0 bits (92), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 38/92 (41%), Gaps = 8/92 (8%)
Query: 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYE 63
+ +VYV NLP + L F G + KV + +DK T KG A + +
Sbjct: 8 SKSTVYVSNLPFSLTNNDLYRIFSKYGKV--------VKVTIMKDKDTRRSKGVAFILFL 59
Query: 64 DPHAALAAVEWFNNKDFHGNLIGVFIAESRGK 95
D +A NNK G +I IA G+
Sbjct: 60 DKDSAQNCTRAINNKQLFGRVIKASIAIDNGR 91
>sp|Q19706|EIF3G_CAEEL Eukaryotic translation initiation factor 3 subunit G
OS=Caenorhabditis elegans GN=eif-3.G PE=3 SV=1
Length = 256
Score = 39.7 bits (91), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 8/78 (10%)
Query: 10 VCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAAL 69
V NLP +ED L + FG IG + ++++ RDK T KG A VT+E A
Sbjct: 180 VTNLPQEMNEDELRDLFGKIGRV--------IRIFIARDKVTGLPKGFAFVTFESRDDAA 231
Query: 70 AAVEWFNNKDFHGNLIGV 87
A+ N+ + ++ V
Sbjct: 232 RAIAELNDIRMYHMVLKV 249
>sp|A8WLV5|EIF3G_CAEBR Eukaryotic translation initiation factor 3 subunit G
OS=Caenorhabditis briggsae GN=eif-3.G.1 PE=3 SV=2
Length = 261
Score = 39.7 bits (91), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 8/78 (10%)
Query: 10 VCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAAL 69
V NLP +ED L + FG IG + ++++ RDK T KG A VT+E A
Sbjct: 185 VTNLPQEMNEDELRDVFGRIGRV--------IRIFIARDKITGLPKGFAFVTFESRDDAA 236
Query: 70 AAVEWFNNKDFHGNLIGV 87
A+ N+ + ++ V
Sbjct: 237 RAIAELNDIRMYHMVLKV 254
>sp|Q9WV02|RBMX_MOUSE RNA-binding motif protein, X chromosome OS=Mus musculus GN=Rbmx
PE=1 SV=1
Length = 391
Score = 39.7 bits (91), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 38/85 (44%), Gaps = 8/85 (9%)
Query: 6 GSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDP 65
G +++ L T+E L FG G + + V L +D+ TN+ +G A VT+E P
Sbjct: 8 GKLFIGGLNTETNEKALEAVFGKYGRIVE--------VLLMKDRETNKSRGFAFVTFESP 59
Query: 66 HAALAAVEWFNNKDFHGNLIGVFIA 90
A A N K G I V A
Sbjct: 60 ADAKDAARDMNGKSLDGKAIKVEQA 84
>sp|Q4V898|RBMX_RAT RNA-binding motif protein, X chromosome OS=Rattus norvegicus
GN=Rbmx PE=1 SV=1
Length = 390
Score = 39.3 bits (90), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 38/85 (44%), Gaps = 8/85 (9%)
Query: 6 GSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDP 65
G +++ L T+E L FG G + + V L +D+ TN+ +G A VT+E P
Sbjct: 8 GKLFIGGLNTETNEKALEAVFGKYGRIVE--------VLLMKDRETNKSRGFAFVTFESP 59
Query: 66 HAALAAVEWFNNKDFHGNLIGVFIA 90
A A N K G I V A
Sbjct: 60 ADAKDAARDMNGKSLDGKAIKVEQA 84
>sp|Q4R7F0|RBMX_MACFA RNA-binding motif protein, X chromosome OS=Macaca fascicularis
GN=RBMX PE=2 SV=1
Length = 391
Score = 39.3 bits (90), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 8/82 (9%)
Query: 6 GSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDP 65
G +++ L T+E L FG G + + V L +D+ TN+ +G A VT+E P
Sbjct: 8 GKLFIGGLNTETNEKALEAVFGKYGRIVE--------VLLMKDRETNKSRGFAFVTFESP 59
Query: 66 HAALAAVEWFNNKDFHGNLIGV 87
A A N K G I V
Sbjct: 60 ADAKDAARDMNGKSLDGKAIKV 81
>sp|O43120|UAP2_SCHPO Splicing factor U2AF-associated protein 2 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=uap2 PE=1 SV=1
Length = 367
Score = 39.3 bits (90), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTY 62
+ N +VY+ LP D + E F G++ K+ G P++ +YR + KGDA + +
Sbjct: 107 VINKAVYIQGLPLDVTVDEIEEVFKKCGVIAKNIDNGTPRIKIYRTEDGTP-KGDALIVF 165
Query: 63 EDPHAALAAVEWFNNKDFH 81
+ A + F++ +F
Sbjct: 166 FRSESVELAEQLFDDTEFR 184
>sp|A5A6M3|RBMX_PANTR RNA-binding motif protein, X chromosome OS=Pan troglodytes
GN=RBMX PE=2 SV=1
Length = 391
Score = 39.3 bits (90), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 8/82 (9%)
Query: 6 GSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDP 65
G +++ L T+E L FG G + + V L +D+ TN+ +G A VT+E P
Sbjct: 8 GKLFIGGLNTETNEKALEAVFGKYGRIVE--------VLLMKDRETNKSRGFAFVTFESP 59
Query: 66 HAALAAVEWFNNKDFHGNLIGV 87
A A N K G I V
Sbjct: 60 ADAKDAARDMNGKSLDGKAIKV 81
>sp|P38159|RBMX_HUMAN RNA-binding motif protein, X chromosome OS=Homo sapiens GN=RBMX
PE=1 SV=3
Length = 391
Score = 39.3 bits (90), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 8/82 (9%)
Query: 6 GSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDP 65
G +++ L T+E L FG G + + V L +D+ TN+ +G A VT+E P
Sbjct: 8 GKLFIGGLNTETNEKALEAVFGKYGRIVE--------VLLMKDRETNKSRGFAFVTFESP 59
Query: 66 HAALAAVEWFNNKDFHGNLIGV 87
A A N K G I V
Sbjct: 60 ADAKDAARDMNGKSLDGKAIKV 81
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.136 0.446
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 114,611,587
Number of Sequences: 539616
Number of extensions: 5470931
Number of successful extensions: 33382
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 211
Number of HSP's successfully gapped in prelim test: 386
Number of HSP's that attempted gapping in prelim test: 26427
Number of HSP's gapped (non-prelim): 5311
length of query: 249
length of database: 191,569,459
effective HSP length: 115
effective length of query: 134
effective length of database: 129,513,619
effective search space: 17354824946
effective search space used: 17354824946
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)