Query 025700
Match_columns 249
No_of_seqs 435 out of 2295
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 15:42:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025700.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025700hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fxv_A ELAV-like protein 1; RN 99.9 1.4E-21 4.7E-26 145.1 12.1 82 3-92 17-98 (99)
2 2lxi_A RNA-binding protein 10; 99.9 1.4E-21 4.6E-26 142.8 8.3 85 5-97 1-87 (91)
3 3s8s_A Histone-lysine N-methyl 99.8 1.4E-20 4.7E-25 142.4 12.1 85 2-94 3-87 (110)
4 2cpe_A RNA-binding protein EWS 99.8 1.7E-20 5.8E-25 141.7 12.4 94 3-96 13-106 (113)
5 1h2v_Z 20 kDa nuclear CAP bind 99.8 1.6E-20 5.4E-25 150.0 12.9 85 3-95 37-121 (156)
6 1x5s_A Cold-inducible RNA-bind 99.8 1.9E-20 6.4E-25 138.9 11.1 88 1-96 8-95 (102)
7 1x5t_A Splicing factor 3B subu 99.8 2.6E-20 8.8E-25 136.5 11.7 87 2-96 2-89 (96)
8 2cqb_A Peptidyl-prolyl CIS-tra 99.8 1.9E-20 6.5E-25 138.8 11.0 89 1-97 8-96 (102)
9 2dnz_A Probable RNA-binding pr 99.8 3.4E-20 1.2E-24 135.6 12.2 86 2-95 2-87 (95)
10 1whw_A Hypothetical protein ri 99.8 4.9E-20 1.7E-24 135.8 12.0 86 3-96 6-91 (99)
11 2lkz_A RNA-binding protein 5; 99.8 8.9E-21 3.1E-25 139.8 7.9 82 5-92 9-94 (95)
12 3bs9_A Nucleolysin TIA-1 isofo 99.8 4.6E-20 1.6E-24 132.6 11.3 83 3-93 4-86 (87)
13 3mdf_A Peptidyl-prolyl CIS-tra 99.8 4.9E-20 1.7E-24 131.9 10.9 83 1-91 3-85 (85)
14 2dgo_A Cytotoxic granule-assoc 99.8 1.8E-19 6.1E-24 136.5 14.6 86 3-96 13-98 (115)
15 2cpz_A CUG triplet repeat RNA- 99.8 7.5E-20 2.6E-24 138.7 12.4 87 3-97 23-109 (115)
16 3md1_A Nuclear and cytoplasmic 99.8 7.8E-20 2.7E-24 130.2 11.7 82 5-94 1-82 (83)
17 2cqd_A RNA-binding region cont 99.8 1E-19 3.6E-24 138.1 12.9 85 3-96 15-99 (116)
18 2cpf_A RNA binding motif prote 99.8 7.2E-20 2.5E-24 134.7 11.6 87 2-96 2-91 (98)
19 2dgs_A DAZ-associated protein 99.8 7.6E-20 2.6E-24 134.9 11.7 86 3-97 8-93 (99)
20 2cq0_A Eukaryotic translation 99.8 6.1E-20 2.1E-24 136.4 10.9 86 3-96 13-98 (103)
21 3ex7_B RNA-binding protein 8A; 99.8 4.1E-20 1.4E-24 142.2 10.1 86 3-96 20-105 (126)
22 3q2s_C Cleavage and polyadenyl 99.8 7E-21 2.4E-25 161.8 6.2 82 4-93 67-150 (229)
23 2la6_A RNA-binding protein FUS 99.8 6.7E-20 2.3E-24 135.3 10.4 89 3-91 11-99 (99)
24 2dnm_A SRP46 splicing factor; 99.8 6.4E-20 2.2E-24 136.3 10.2 86 3-96 11-96 (103)
25 1x5u_A Splicing factor 3B subu 99.8 1.1E-19 3.7E-24 135.4 11.2 86 3-96 13-98 (105)
26 2x1f_A MRNA 3'-END-processing 99.8 1.3E-19 4.3E-24 133.1 11.3 84 4-95 1-84 (96)
27 1x4h_A RNA-binding protein 28; 99.8 1.9E-19 6.5E-24 135.3 12.1 87 3-97 13-105 (111)
28 2do4_A Squamous cell carcinoma 99.8 2.2E-19 7.4E-24 132.7 12.1 84 3-95 15-98 (100)
29 1u6f_A Tcubp1, RNA-binding pro 99.8 3.2E-19 1.1E-23 139.5 13.6 85 4-96 41-125 (139)
30 2fy1_A RNA-binding motif prote 99.8 2.6E-19 8.8E-24 136.4 12.5 85 2-95 4-88 (116)
31 2cph_A RNA binding motif prote 99.8 2.1E-19 7.1E-24 134.2 11.5 87 3-97 13-101 (107)
32 2cqc_A Arginine/serine-rich sp 99.8 1.8E-19 6.3E-24 131.5 10.9 82 3-92 13-94 (95)
33 3p5t_L Cleavage and polyadenyl 99.8 3.5E-20 1.2E-24 134.7 6.9 82 6-95 2-85 (90)
34 2dgp_A Bruno-like 4, RNA bindi 99.8 1.6E-19 5.3E-24 134.8 10.5 87 2-96 10-99 (106)
35 1p27_B RNA-binding protein 8A; 99.8 2E-19 7E-24 134.1 11.0 85 3-95 21-105 (106)
36 2dng_A Eukaryotic translation 99.8 2.9E-19 9.8E-24 132.8 11.8 84 3-96 13-96 (103)
37 2e5h_A Zinc finger CCHC-type a 99.8 1.7E-19 5.9E-24 131.5 10.3 82 2-91 13-94 (94)
38 2div_A TRNA selenocysteine ass 99.8 2.4E-19 8.2E-24 132.1 10.8 85 2-94 6-95 (99)
39 2dnh_A Bruno-like 5, RNA bindi 99.8 3.8E-19 1.3E-23 132.4 11.9 86 3-97 13-101 (105)
40 2do0_A HnRNP M, heterogeneous 99.8 9.9E-19 3.4E-23 132.0 14.3 84 3-95 13-96 (114)
41 2dhg_A TRNA selenocysteine ass 99.8 3E-19 1E-23 132.8 10.9 85 3-96 7-93 (104)
42 2d9p_A Polyadenylate-binding p 99.8 3E-19 1E-23 132.6 10.9 85 3-97 13-97 (103)
43 4a8x_A RNA-binding protein wit 99.8 2.7E-19 9.3E-24 128.7 10.3 84 3-94 2-86 (88)
44 1wi8_A EIF-4B, eukaryotic tran 99.8 2.7E-19 9.2E-24 133.2 10.5 84 3-96 13-97 (104)
45 1oo0_B CG8781-PA, drosophila Y 99.8 3.5E-19 1.2E-23 133.8 10.9 85 3-95 24-108 (110)
46 4f25_A Polyadenylate-binding p 99.8 4.9E-19 1.7E-23 134.5 11.6 82 4-95 4-85 (115)
47 2dh8_A DAZ-associated protein 99.8 3.5E-19 1.2E-23 132.7 10.5 85 3-96 14-98 (105)
48 3ns6_A Eukaryotic translation 99.8 6E-20 2E-24 136.2 6.1 83 4-94 5-94 (100)
49 2cqi_A Nucleolysin TIAR; RNA r 99.8 1.3E-18 4.4E-23 129.2 13.3 84 3-96 13-96 (103)
50 2jrs_A RNA-binding protein 39; 99.8 3.8E-19 1.3E-23 133.8 10.2 84 3-94 24-107 (108)
51 3ucg_A Polyadenylate-binding p 99.8 2.2E-19 7.6E-24 129.5 8.5 81 4-93 5-85 (89)
52 2cq3_A RNA-binding protein 9; 99.8 1.5E-18 5.3E-23 128.8 13.0 85 3-97 13-97 (103)
53 2cqp_A RNA-binding protein 12; 99.8 3.6E-19 1.2E-23 130.9 9.2 82 4-93 14-95 (98)
54 2ek1_A RNA-binding protein 12; 99.8 2.9E-19 9.8E-24 130.6 8.4 82 3-92 13-94 (95)
55 3ulh_A THO complex subunit 4; 99.8 9.6E-19 3.3E-23 130.7 11.5 80 3-91 27-106 (107)
56 2cqg_A TDP-43, TAR DNA-binding 99.8 2E-18 7E-23 128.1 13.1 84 3-96 13-96 (103)
57 3n9u_C Cleavage and polyadenyl 99.8 7.4E-19 2.5E-23 140.9 10.8 82 4-93 54-137 (156)
58 3s7r_A Heterogeneous nuclear r 99.8 1.6E-18 5.4E-23 124.7 11.5 79 3-90 9-87 (87)
59 2dgx_A KIAA0430 protein; RRM d 99.8 1.4E-18 4.8E-23 127.7 11.4 82 3-95 7-92 (96)
60 2ywk_A Putative RNA-binding pr 99.8 1E-18 3.5E-23 127.7 10.6 81 3-92 14-94 (95)
61 2kxn_B Transformer-2 protein h 99.8 3.9E-19 1.3E-23 138.0 8.7 84 3-94 44-127 (129)
62 2dgv_A HnRNP M, heterogeneous 99.8 1.4E-18 4.6E-23 126.3 10.9 84 2-95 5-88 (92)
63 2dgu_A Heterogeneous nuclear r 99.8 3.4E-18 1.2E-22 127.1 13.1 79 3-97 9-87 (103)
64 2rs2_A Musashi-1, RNA-binding 99.8 1.2E-18 4.1E-23 131.2 10.6 85 2-95 22-106 (109)
65 2dgw_A Probable RNA-binding pr 99.8 2.3E-18 7.8E-23 125.0 11.6 82 3-95 8-89 (91)
66 1x4b_A Heterogeneous nuclear r 99.8 1.5E-18 5E-23 131.7 11.0 83 5-96 27-109 (116)
67 2khc_A Testis-specific RNP-typ 99.8 5.3E-19 1.8E-23 134.5 8.5 81 3-91 38-118 (118)
68 2m2b_A RNA-binding protein 10; 99.8 4E-19 1.4E-23 138.0 7.8 87 3-96 21-111 (131)
69 2dis_A Unnamed protein product 99.8 9.5E-19 3.2E-23 131.1 9.6 87 2-96 5-95 (109)
70 1rk8_A CG8781-PA, CG8781-PA pr 99.8 2E-18 6.7E-23 139.2 11.8 86 3-96 70-155 (165)
71 2lcw_A RNA-binding protein FUS 99.6 2E-20 7E-25 142.1 0.0 94 2-95 4-97 (116)
72 1x4a_A Splicing factor, argini 99.8 4.2E-18 1.5E-22 127.7 12.6 82 3-95 20-101 (109)
73 1p1t_A Cleavage stimulation fa 99.8 1.2E-18 4.2E-23 129.3 9.5 84 4-95 7-90 (104)
74 1sjq_A Polypyrimidine tract-bi 99.8 1.7E-18 5.9E-23 129.6 10.2 82 2-97 13-96 (105)
75 2cpy_A RNA-binding protein 12; 99.8 3.2E-19 1.1E-23 135.3 6.0 82 3-94 13-95 (114)
76 2fc8_A NCL protein; structure 99.8 2.6E-18 8.8E-23 127.2 10.8 82 3-95 13-94 (102)
77 2cpi_A CCR4-NOT transcription 99.8 1.5E-18 5.1E-23 131.0 9.5 85 3-95 13-103 (111)
78 1wez_A HnRNP H', FTP-3, hetero 99.8 1.2E-18 3.9E-23 129.9 8.7 81 3-94 13-93 (102)
79 2fc9_A NCL protein; structure 99.8 2.9E-18 9.9E-23 126.8 10.5 82 2-95 12-93 (101)
80 1x4e_A RNA binding motif, sing 99.8 2.4E-19 8.1E-24 128.5 4.3 81 2-90 2-82 (85)
81 2kn4_A Immunoglobulin G-bindin 99.8 3E-18 1E-22 136.7 11.2 84 4-95 69-152 (158)
82 2jwn_A Embryonic polyadenylate 99.8 4.1E-18 1.4E-22 130.6 11.4 82 5-95 36-117 (124)
83 3pgw_S U1-70K; protein-RNA com 99.8 5.6E-18 1.9E-22 156.6 14.5 85 4-96 101-185 (437)
84 2kt5_A RNA and export factor-b 99.8 4.4E-18 1.5E-22 130.6 11.5 85 3-96 33-117 (124)
85 2cq4_A RNA binding motif prote 99.8 1.5E-18 5.3E-23 131.2 8.8 82 5-95 25-106 (114)
86 1x4c_A Splicing factor, argini 99.8 1E-17 3.5E-22 125.7 13.2 78 3-95 13-95 (108)
87 2mss_A Protein (musashi1); RNA 99.8 9E-19 3.1E-23 122.5 6.6 75 7-90 1-75 (75)
88 1s79_A Lupus LA protein; RRM, 99.8 1.5E-18 5.2E-23 129.6 8.2 80 3-92 9-88 (103)
89 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 3.2E-18 1.1E-22 133.5 10.4 80 3-90 61-140 (140)
90 3r27_A HnRNP L, heterogeneous 99.8 4.1E-18 1.4E-22 126.5 10.2 79 2-94 18-98 (100)
91 2dnq_A RNA-binding protein 4B; 99.8 9.1E-18 3.1E-22 121.6 11.5 79 2-96 5-83 (90)
92 2cpx_A Hypothetical protein FL 99.8 1.3E-18 4.4E-23 131.6 7.2 86 3-96 23-108 (115)
93 1uaw_A Mouse-musashi-1; RNP-ty 99.8 1.4E-18 4.8E-23 121.9 6.8 76 6-90 1-76 (77)
94 2j76_E EIF-4B, EIF4B, eukaryot 99.7 8.8E-19 3E-23 129.8 5.8 82 3-94 17-99 (100)
95 1wg5_A Heterogeneous nuclear r 99.7 4.1E-18 1.4E-22 127.1 9.3 85 3-96 13-97 (104)
96 2cq1_A PTB-like protein L; RRM 99.7 9.9E-18 3.4E-22 124.8 11.4 82 2-97 12-95 (101)
97 2lea_A Serine/arginine-rich sp 99.7 1.3E-18 4.5E-23 136.0 6.9 85 4-96 46-130 (135)
98 2ad9_A Polypyrimidine tract-bi 99.7 8E-18 2.7E-22 128.8 10.4 82 2-97 28-111 (119)
99 2db1_A Heterogeneous nuclear r 99.7 4.2E-18 1.4E-22 130.1 8.8 81 4-94 16-99 (118)
100 2ki2_A SS-DNA binding protein 99.7 8E-19 2.7E-23 127.1 4.5 81 6-95 2-82 (90)
101 1x5o_A RNA binding motif, sing 99.7 8.4E-18 2.9E-22 127.0 9.9 82 3-93 23-112 (114)
102 1why_A Hypothetical protein ri 99.7 1.1E-17 3.7E-22 122.9 10.2 80 2-95 14-95 (97)
103 2err_A Ataxin-2-binding protei 99.7 9.2E-18 3.1E-22 126.3 10.0 82 3-94 27-108 (109)
104 1fj7_A Nucleolin RBD1, protein 99.7 1.1E-18 3.7E-23 129.2 4.7 82 4-95 16-97 (101)
105 2wbr_A GW182, gawky, LD47780P; 99.7 1.4E-17 4.8E-22 120.1 10.2 75 3-91 5-79 (89)
106 1wex_A Hypothetical protein (r 99.7 8.7E-18 3E-22 125.7 9.4 81 2-96 12-94 (104)
107 1x4d_A Matrin 3; structural ge 99.7 5.1E-18 1.7E-22 126.6 8.0 80 2-95 12-94 (102)
108 1x4g_A Nucleolysin TIAR; struc 99.7 2.6E-17 8.8E-22 123.5 11.9 80 3-96 23-102 (109)
109 2dgt_A RNA-binding protein 30; 99.7 2.8E-17 9.6E-22 119.5 11.8 78 3-96 8-85 (92)
110 2hgl_A HNRPF protein, heteroge 99.7 4.7E-18 1.6E-22 133.2 8.0 82 3-94 42-126 (136)
111 2nlw_A Eukaryotic translation 99.7 8.9E-18 3.1E-22 125.4 9.0 82 4-95 14-102 (105)
112 2cqh_A IGF-II mRNA-binding pro 99.7 1.7E-17 5.9E-22 120.8 10.3 78 3-95 6-85 (93)
113 1wel_A RNA-binding protein 12; 99.7 2.2E-18 7.6E-23 132.5 5.7 82 4-94 24-105 (124)
114 2hgn_A Heterogeneous nuclear r 99.7 1.4E-18 4.8E-23 136.7 4.5 82 3-95 44-125 (139)
115 2dnn_A RNA-binding protein 12; 99.7 5.3E-18 1.8E-22 128.0 6.9 78 5-93 16-93 (109)
116 1iqt_A AUF1, heterogeneous nuc 99.7 3.8E-18 1.3E-22 119.2 5.5 75 7-90 1-75 (75)
117 2cpd_A Apobec-1 stimulating pr 99.7 7.6E-17 2.6E-21 118.8 12.6 77 3-95 13-91 (99)
118 2dnp_A RNA-binding protein 14; 99.7 5E-17 1.7E-21 117.7 11.3 77 3-95 7-83 (90)
119 2cpj_A Non-POU domain-containi 99.7 2.5E-17 8.5E-22 121.4 9.9 80 3-96 13-92 (99)
120 1nu4_A U1A RNA binding domain; 99.7 1.5E-17 5.1E-22 121.9 8.3 83 2-95 5-91 (97)
121 2hvz_A Splicing factor, argini 99.7 2E-17 6.7E-22 122.3 9.0 77 6-95 1-77 (101)
122 2e5j_A Methenyltetrahydrofolat 99.7 3E-17 1E-21 120.6 9.9 79 4-95 18-96 (97)
123 2jvr_A Nucleolar protein 3; RN 99.7 2.1E-17 7.2E-22 125.1 9.1 79 3-93 26-105 (111)
124 1fjc_A Nucleolin RBD2, protein 99.7 1.5E-17 5E-22 121.8 7.9 80 3-95 14-93 (96)
125 2krb_A Eukaryotic translation 99.7 6.2E-18 2.1E-22 120.2 5.7 73 5-87 1-80 (81)
126 2a3j_A U1 small nuclear ribonu 99.7 3E-17 1E-21 127.2 10.0 82 3-95 27-112 (127)
127 4f02_A Polyadenylate-binding p 99.7 5E-17 1.7E-21 135.9 12.1 84 3-94 13-96 (213)
128 1wf1_A RNA-binding protein RAL 99.7 5.9E-17 2E-21 121.7 11.0 76 4-95 26-102 (110)
129 2la4_A Nuclear and cytoplasmic 99.7 2.9E-17 9.8E-22 121.4 9.0 76 4-93 26-101 (101)
130 2xnq_A Nuclear polyadenylated 99.7 8.3E-17 2.8E-21 118.6 11.3 77 2-94 19-96 (97)
131 2kvi_A Nuclear polyadenylated 99.7 2.7E-17 9.3E-22 120.7 8.7 79 2-96 7-86 (96)
132 2dha_A FLJ20171 protein; RRM d 99.7 1.6E-17 5.4E-22 128.0 7.6 84 3-94 21-106 (123)
133 2e5g_A U6 snRNA-specific termi 99.7 5.8E-17 2E-21 118.4 10.2 79 3-95 6-84 (94)
134 1fxl_A Paraneoplastic encephal 99.7 1E-16 3.6E-21 127.2 12.2 83 4-94 1-83 (167)
135 2jvo_A Nucleolar protein 3; nu 99.7 7E-17 2.4E-21 121.4 10.5 77 3-95 29-105 (108)
136 3lqv_A PRE-mRNA branch site pr 99.7 6.3E-17 2.2E-21 122.3 10.3 82 2-94 5-86 (115)
137 2f3j_A RNA and export factor b 99.7 3.2E-17 1.1E-21 133.9 9.3 83 3-94 86-168 (177)
138 2lmi_A GRSF-1, G-rich sequence 99.7 6.7E-18 2.3E-22 126.5 4.6 82 3-94 9-93 (107)
139 1b7f_A Protein (SXL-lethal pro 99.7 7.2E-17 2.5E-21 128.6 10.9 84 4-95 2-85 (168)
140 2ytc_A PRE-mRNA-splicing facto 99.7 8.3E-17 2.8E-21 115.0 10.1 75 3-91 10-85 (85)
141 2xs2_A Deleted in azoospermia- 99.7 2.5E-17 8.6E-22 121.9 7.4 82 4-96 8-89 (102)
142 1x4f_A Matrin 3; structural ge 99.7 5.3E-17 1.8E-21 123.0 8.5 81 2-96 22-105 (112)
143 3md3_A Nuclear and cytoplasmic 99.7 1.7E-16 5.9E-21 125.9 11.6 82 3-92 85-166 (166)
144 2e44_A Insulin-like growth fac 99.7 8.3E-17 2.8E-21 117.7 8.8 79 4-94 14-93 (96)
145 3beg_B Splicing factor, argini 99.7 6.8E-17 2.3E-21 122.7 8.6 75 4-93 15-94 (115)
146 3egn_A RNA-binding protein 40; 99.7 5E-17 1.7E-21 127.7 7.8 90 3-95 43-132 (143)
147 1wg1_A KIAA1579 protein, homol 99.7 1.4E-16 4.7E-21 115.0 9.2 77 3-94 3-79 (88)
148 2qfj_A FBP-interacting repress 99.7 2.5E-16 8.5E-21 130.6 11.9 85 4-96 124-208 (216)
149 2hgm_A HNRPF protein, heteroge 99.7 3.2E-17 1.1E-21 126.8 5.8 81 3-94 40-122 (126)
150 1l3k_A Heterogeneous nuclear r 99.7 2.1E-16 7.3E-21 129.1 11.0 85 4-97 103-187 (196)
151 2i2y_A Fusion protein consists 99.7 1.2E-16 4.2E-21 126.5 9.1 79 3-94 71-149 (150)
152 1x5p_A Negative elongation fac 99.7 6.5E-16 2.2E-20 113.4 12.4 78 3-96 13-90 (97)
153 2yh0_A Splicing factor U2AF 65 99.7 3.4E-16 1.1E-20 128.1 12.0 85 3-95 112-196 (198)
154 1whx_A Hypothetical protein ri 99.7 9.3E-17 3.2E-21 121.2 7.3 77 4-94 9-85 (111)
155 2j8a_A Histone-lysine N-methyl 99.7 2.1E-16 7.3E-21 121.5 8.9 78 6-91 3-94 (136)
156 2g4b_A Splicing factor U2AF 65 99.7 4.4E-16 1.5E-20 124.6 11.1 79 5-91 94-172 (172)
157 2cq2_A Hypothetical protein LO 99.7 2.7E-16 9.2E-21 119.3 9.2 81 2-96 22-109 (114)
158 1l3k_A Heterogeneous nuclear r 99.7 4.5E-16 1.5E-20 127.2 10.8 83 4-95 12-94 (196)
159 2cjk_A Nuclear polyadenylated 99.7 1.5E-16 5.2E-21 126.7 7.6 80 5-93 87-166 (167)
160 3zzy_A Polypyrimidine tract-bi 99.6 1E-15 3.6E-20 118.7 11.2 76 7-95 30-108 (130)
161 1wf0_A TDP-43, TAR DNA-binding 99.6 1.9E-16 6.6E-21 114.1 6.5 80 2-96 2-81 (88)
162 1sjr_A Polypyrimidine tract-bi 99.6 7.2E-16 2.5E-20 124.0 10.4 77 6-94 47-125 (164)
163 4f02_A Polyadenylate-binding p 99.6 2.1E-16 7.1E-21 132.1 7.6 82 4-95 102-183 (213)
164 2diu_A KIAA0430 protein; struc 99.6 6.5E-16 2.2E-20 112.6 9.2 77 2-96 5-87 (96)
165 3nmr_A Cugbp ELAV-like family 99.6 1.1E-15 3.6E-20 122.4 10.5 85 3-95 1-90 (175)
166 3d2w_A TAR DNA-binding protein 99.6 9.7E-16 3.3E-20 111.1 9.2 77 2-95 8-86 (89)
167 2pe8_A Splicing factor 45; RRM 99.6 1.6E-15 5.6E-20 113.5 10.7 83 2-92 5-93 (105)
168 1b7f_A Protein (SXL-lethal pro 99.6 1.4E-15 4.8E-20 121.1 10.8 80 3-90 87-168 (168)
169 2qfj_A FBP-interacting repress 99.6 5.5E-16 1.9E-20 128.5 8.5 82 4-93 27-108 (216)
170 2dnl_A Cytoplasmic polyadenyla 99.6 6.4E-16 2.2E-20 117.0 8.1 77 3-90 6-85 (114)
171 2hzc_A Splicing factor U2AF 65 99.6 9.7E-16 3.3E-20 109.8 8.7 72 3-89 4-86 (87)
172 3md3_A Nuclear and cytoplasmic 99.6 2.1E-15 7.2E-20 119.5 11.0 81 6-95 1-81 (166)
173 3tyt_A Heterogeneous nuclear r 99.6 1.8E-15 6.2E-20 126.2 10.5 79 3-94 2-81 (205)
174 2e5i_A Heterogeneous nuclear r 99.6 2.9E-15 9.8E-20 115.4 10.5 78 4-95 22-104 (124)
175 1fxl_A Paraneoplastic encephal 99.6 2.6E-15 9.1E-20 119.0 10.7 79 4-90 87-167 (167)
176 2cjk_A Nuclear polyadenylated 99.6 1.5E-15 5.2E-20 120.9 7.9 80 4-93 2-81 (167)
177 3nmr_A Cugbp ELAV-like family 99.6 3.6E-15 1.2E-19 119.3 10.2 79 4-91 94-175 (175)
178 2bz2_A Negative elongation fac 99.6 4E-15 1.4E-19 114.1 9.7 78 3-96 37-114 (121)
179 1fje_B Nucleolin RBD12, protei 99.6 3.4E-15 1.2E-19 120.0 8.7 77 4-93 98-174 (175)
180 3pgw_A U1-A; protein-RNA compl 99.6 9.4E-15 3.2E-19 126.5 11.0 82 2-94 6-91 (282)
181 2ghp_A U4/U6 snRNA-associated 99.6 8E-15 2.7E-19 127.5 9.8 83 3-94 208-292 (292)
182 3smz_A Protein raver-1, ribonu 99.6 2.6E-14 8.8E-19 123.8 12.3 86 2-95 92-177 (284)
183 2voo_A Lupus LA protein; RNA-b 99.6 1.8E-14 6.3E-19 119.0 10.7 78 5-92 109-186 (193)
184 2adc_A Polypyrimidine tract-bi 99.5 1.5E-14 5.1E-19 122.1 9.7 79 3-94 32-111 (229)
185 2dit_A HIV TAT specific factor 99.5 6E-14 2E-18 105.7 11.0 81 3-95 13-104 (112)
186 1fje_B Nucleolin RBD12, protei 99.5 5.2E-15 1.8E-19 118.9 5.4 83 3-95 11-93 (175)
187 3u1l_A PRE-mRNA-splicing facto 99.5 1.6E-14 5.5E-19 123.1 8.7 79 3-95 132-231 (240)
188 3smz_A Protein raver-1, ribonu 99.5 3E-14 1E-18 123.3 10.5 83 4-95 183-266 (284)
189 3tyt_A Heterogeneous nuclear r 99.5 2.5E-14 8.6E-19 119.2 8.8 78 3-90 121-204 (205)
190 3pgw_A U1-A; protein-RNA compl 99.5 6.1E-14 2.1E-18 121.3 10.9 75 4-91 206-281 (282)
191 3v4m_A Splicing factor U2AF 65 99.5 5.5E-14 1.9E-18 105.1 8.6 82 3-92 3-96 (105)
192 1qm9_A Polypyrimidine tract-bi 99.5 2.4E-14 8.2E-19 117.5 7.2 78 4-94 2-80 (198)
193 2yh0_A Splicing factor U2AF 65 99.5 1.5E-14 5.3E-19 118.1 5.2 87 3-94 2-89 (198)
194 1qm9_A Polypyrimidine tract-bi 99.5 6E-14 2.1E-18 115.1 8.6 78 3-93 118-197 (198)
195 2adc_A Polypyrimidine tract-bi 99.5 1.5E-13 5.3E-18 115.8 10.0 78 3-93 149-228 (229)
196 3sde_A Paraspeckle component 1 99.5 1.9E-13 6.6E-18 117.5 10.7 84 2-94 93-180 (261)
197 3gj8_B Nuclear pore complex pr 99.5 1.5E-14 5.3E-19 105.5 2.7 87 145-241 5-91 (92)
198 2ghp_A U4/U6 snRNA-associated 99.5 1.6E-13 5.4E-18 119.3 9.6 83 4-95 116-199 (292)
199 3ue2_A Poly(U)-binding-splicin 99.5 2.4E-13 8.2E-18 103.7 9.3 82 3-92 18-108 (118)
200 2g4b_A Splicing factor U2AF 65 99.4 3.2E-13 1.1E-17 107.8 9.9 86 3-93 2-88 (172)
201 1jmt_A Splicing factor U2AF 35 99.4 5.7E-14 2E-18 104.8 4.9 72 10-90 20-103 (104)
202 3sde_A Paraspeckle component 1 99.4 2.5E-13 8.4E-18 116.8 9.2 75 4-92 21-95 (261)
203 2d9o_A DNAJ (HSP40) homolog, s 99.4 3.1E-12 1.1E-16 94.7 11.2 77 5-96 10-93 (100)
204 3tht_A Alkylated DNA repair pr 99.4 1.1E-12 3.8E-17 117.3 8.9 76 2-91 15-97 (345)
205 2k1p_A Zinc finger RAN-binding 99.3 7.6E-13 2.6E-17 77.8 2.9 31 212-242 3-33 (33)
206 3s6e_A RNA-binding protein 39; 99.3 2.4E-11 8.1E-16 92.1 9.5 78 3-92 5-92 (114)
207 2lk0_A RNA-binding protein 5; 99.3 2.3E-12 7.7E-17 75.2 2.9 30 212-241 2-31 (32)
208 1n0z_A ZNF265; zinc finger, RN 99.2 7.4E-12 2.5E-16 78.7 4.3 36 207-242 6-43 (45)
209 1n0z_A ZNF265; zinc finger, RN 99.2 6.8E-12 2.3E-16 78.8 3.6 36 143-178 9-44 (45)
210 2dnr_A Synaptojanin-1; RRM dom 99.2 4.8E-11 1.6E-15 86.1 8.3 76 1-93 3-86 (91)
211 2k1p_A Zinc finger RAN-binding 99.1 2.4E-11 8.3E-16 71.3 2.9 30 145-176 3-32 (33)
212 2lk0_A RNA-binding protein 5; 99.1 1.8E-11 6.1E-16 71.4 1.2 30 145-176 2-31 (32)
213 1owx_A Lupus LA protein, SS-B, 99.1 3.3E-10 1.1E-14 86.4 7.9 75 3-91 16-94 (121)
214 1ufw_A Synaptojanin 2; RNP dom 99.1 4.2E-10 1.5E-14 81.5 7.4 74 1-91 11-93 (95)
215 3dxb_A Thioredoxin N-terminall 98.8 7.3E-09 2.5E-13 86.5 8.0 69 16-92 140-212 (222)
216 2l9w_A U4/U6 snRNA-associated- 98.4 3.2E-06 1.1E-10 62.6 9.7 71 5-89 21-96 (117)
217 3gj7_B Nuclear pore complex pr 98.1 9.1E-07 3.1E-11 64.7 2.6 93 145-241 6-98 (98)
218 3gj5_B Nuclear pore complex pr 98.1 1.4E-06 4.6E-11 51.0 2.6 32 210-241 2-33 (34)
219 3gj3_B Nuclear pore complex pr 98.0 3.1E-06 1.1E-10 49.2 2.6 31 211-241 3-33 (33)
220 3gj8_B Nuclear pore complex pr 97.8 2.5E-06 8.6E-11 61.7 0.0 32 212-243 5-36 (92)
221 1uw4_A UPF3X; nonsense mediate 97.8 0.00016 5.4E-09 52.0 9.2 78 6-91 2-86 (91)
222 2dhx_A Poly (ADP-ribose) polym 97.7 0.00026 8.8E-09 51.8 9.5 76 3-95 6-86 (104)
223 1wey_A Calcipressin 1; structu 97.7 0.00014 4.8E-09 53.3 8.1 77 4-94 4-85 (104)
224 1whv_A Poly(A)-specific ribonu 97.7 0.00014 4.9E-09 52.6 7.7 54 5-75 16-69 (100)
225 2ebq_A Nuclear pore complex pr 97.7 5.3E-05 1.8E-09 47.4 4.2 33 211-243 7-39 (47)
226 2ebr_A Nuclear pore complex pr 97.6 8.4E-05 2.9E-09 46.6 4.6 35 210-244 6-40 (47)
227 3ctr_A Poly(A)-specific ribonu 97.4 0.00015 5.2E-09 52.6 4.4 54 6-76 7-60 (101)
228 2l08_A Regulator of nonsense t 97.2 0.00072 2.5E-08 49.0 6.1 79 5-91 9-94 (97)
229 2d9g_A YY1-associated factor 2 97.2 0.00045 1.5E-08 44.5 4.5 31 212-242 8-38 (53)
230 2ebv_A Nuclear pore complex pr 96.9 0.00053 1.8E-08 44.6 2.9 33 209-241 25-57 (57)
231 3p3d_A Nucleoporin 53; structu 96.7 0.0044 1.5E-07 47.2 6.8 88 2-91 4-97 (132)
232 1wwh_A Nucleoporin 35, nucleop 96.6 0.01 3.6E-07 44.5 8.2 70 5-90 24-94 (119)
233 2ebq_A Nuclear pore complex pr 96.6 0.0013 4.3E-08 41.1 2.6 35 142-178 5-39 (47)
234 2ebr_A Nuclear pore complex pr 96.5 0.0039 1.3E-07 38.9 4.5 34 144-179 7-40 (47)
235 3gj5_B Nuclear pore complex pr 96.4 0.001 3.5E-08 38.7 1.1 30 145-176 4-33 (34)
236 2crc_A Ubiquitin conjugating e 96.3 0.0062 2.1E-07 38.9 4.7 30 214-243 9-38 (52)
237 1nj3_A NPL4; NZF domain, rubre 96.3 0.0039 1.3E-07 35.3 3.4 26 214-239 5-30 (31)
238 3pq1_A Poly(A) RNA polymerase; 96.3 0.0024 8.1E-08 58.9 3.5 54 6-73 54-107 (464)
239 3gj3_B Nuclear pore complex pr 96.2 0.0016 5.3E-08 37.7 1.2 29 145-175 4-32 (33)
240 3a9j_C Mitogen-activated prote 96.2 0.004 1.4E-07 36.1 3.0 27 214-240 7-33 (34)
241 2kn4_A Immunoglobulin G-bindin 96.0 0.0062 2.1E-07 47.2 4.1 34 43-78 3-36 (158)
242 2c6a_A Ubiquitin-protein ligas 95.7 0.0061 2.1E-07 37.5 2.5 28 214-241 12-39 (46)
243 3b08_B Ranbp-type and C3HC4-ty 95.6 0.011 3.8E-07 39.3 3.5 29 214-242 7-35 (64)
244 2d9g_A YY1-associated factor 2 95.4 0.0094 3.2E-07 38.2 2.6 32 145-178 8-39 (53)
245 2cr8_A MDM4 protein; ZF-ranbp 94.9 0.034 1.2E-06 34.9 3.9 29 213-241 9-37 (53)
246 2i2y_A Fusion protein consists 94.7 0.01 3.6E-07 45.6 1.5 41 52-93 10-51 (150)
247 2crc_A Ubiquitin conjugating e 94.0 0.047 1.6E-06 34.7 3.3 30 146-177 8-37 (52)
248 3a9j_C Mitogen-activated prote 93.7 0.029 9.9E-07 32.3 1.7 28 146-175 6-33 (34)
249 1nj3_A NPL4; NZF domain, rubre 93.6 0.031 1E-06 31.5 1.6 27 146-174 4-30 (31)
250 2c6a_A Ubiquitin-protein ligas 93.2 0.026 8.9E-07 34.7 1.0 28 146-175 11-38 (46)
251 2ebv_A Nuclear pore complex pr 92.8 0.1 3.6E-06 33.7 3.4 31 143-175 26-56 (57)
252 3b08_B Ranbp-type and C3HC4-ty 92.3 0.043 1.5E-06 36.4 1.2 30 146-177 6-35 (64)
253 1w7p_D VPS36P, YLR417W; ESCRT- 91.6 0.033 1.1E-06 52.4 0.0 84 145-241 114-206 (566)
254 3d45_A Poly(A)-specific ribonu 91.3 0.41 1.4E-05 44.5 7.0 55 5-76 440-494 (507)
255 3gj7_B Nuclear pore complex pr 89.6 0.11 3.8E-06 37.5 1.2 30 144-175 68-97 (98)
256 2cr8_A MDM4 protein; ZF-ranbp 86.3 0.49 1.7E-05 29.6 2.5 29 145-175 8-36 (53)
257 3pwf_A Rubrerythrin; non heme 82.5 0.64 2.2E-05 36.8 2.3 27 214-240 137-164 (170)
258 1lko_A Rubrerythrin all-iron(I 80.5 0.8 2.7E-05 36.9 2.3 26 215-240 155-182 (191)
259 6rxn_A Rubredoxin; electron tr 79.9 0.92 3.2E-05 27.9 1.9 10 216-225 5-14 (46)
260 2g0c_A ATP-dependent RNA helic 79.4 5.9 0.0002 26.3 6.2 73 7-91 2-75 (76)
261 4rxn_A Rubredoxin; electron tr 73.1 1.3 4.3E-05 28.2 1.2 13 212-224 33-45 (54)
262 2v3b_B Rubredoxin 2, rubredoxi 72.7 2.2 7.5E-05 27.2 2.3 12 212-223 33-44 (55)
263 4b2u_A S67; toxin, ICK; NMR {S 71.9 0.94 3.2E-05 25.2 0.3 12 143-156 13-24 (36)
264 1yuz_A Nigerythrin; rubrythrin 71.7 2 6.7E-05 34.9 2.3 27 214-240 170-197 (202)
265 2kn9_A Rubredoxin; metalloprot 71.3 2.3 7.9E-05 29.4 2.3 27 214-240 26-71 (81)
266 2pk2_A Cyclin-T1, protein TAT; 68.6 1 3.5E-05 39.9 0.0 17 136-152 302-318 (358)
267 1yk4_A Rubredoxin, RD; electro 68.3 1.9 6.4E-05 27.2 1.2 13 212-224 32-44 (52)
268 2j9u_B VPS36, vacuolar protein 67.3 3.9 0.00013 27.7 2.6 29 212-240 14-51 (76)
269 1e8j_A Rubredoxin; iron-sulfur 64.7 5 0.00017 25.1 2.7 11 213-223 34-44 (52)
270 1dx8_A Rubredoxin; electron tr 64.1 3.3 0.00011 27.7 1.8 13 212-224 37-49 (70)
271 2gmg_A Hypothetical protein PF 63.2 4.6 0.00016 29.2 2.6 28 214-242 66-97 (105)
272 3j21_g 50S ribosomal protein L 62.4 5 0.00017 25.1 2.3 25 214-238 13-37 (51)
273 1s24_A Rubredoxin 2; electron 62.3 3.9 0.00013 28.6 2.0 27 214-240 34-79 (87)
274 2kdx_A HYPA, hydrogenase/ureas 57.8 6.5 0.00022 28.8 2.7 29 212-240 70-101 (119)
275 1qxf_A GR2, 30S ribosomal prot 56.8 5.7 0.0002 26.2 1.9 25 215-239 7-36 (66)
276 4e8u_A Putative uncharacterize 55.5 23 0.0008 27.8 5.7 56 7-73 14-81 (172)
277 2ayj_A 50S ribosomal protein L 54.6 7.6 0.00026 24.7 2.2 25 214-238 18-42 (56)
278 2k4x_A 30S ribosomal protein S 53.0 6.5 0.00022 24.9 1.7 26 147-174 17-46 (55)
279 3j20_W 30S ribosomal protein S 52.8 7.5 0.00026 25.4 2.0 25 215-239 15-44 (63)
280 2co8_A NEDD9 interacting prote 52.1 16 0.00053 24.5 3.8 27 144-172 11-47 (82)
281 3iz6_X 40S ribosomal protein S 49.2 16 0.00056 25.3 3.4 27 215-241 36-67 (86)
282 3a43_A HYPD, hydrogenase nicke 49.2 11 0.00036 28.6 2.7 29 212-240 67-118 (139)
283 1dl6_A Transcription factor II 48.3 13 0.00045 23.6 2.7 14 212-225 27-40 (58)
284 2xzm_6 RPS27E; ribosome, trans 44.4 12 0.0004 25.7 2.0 25 215-239 32-61 (81)
285 3u5c_b RP61, YS20, 40S ribosom 44.1 14 0.00047 25.4 2.3 26 215-240 34-64 (82)
286 2apo_B Ribosome biogenesis pro 42.9 18 0.00061 23.4 2.6 25 217-243 8-32 (60)
287 3irb_A Uncharacterized protein 40.0 12 0.0004 28.5 1.7 24 217-240 49-72 (145)
288 2aus_D NOP10, ribosome biogene 36.1 22 0.00074 23.0 2.2 26 217-244 7-32 (60)
289 2gnr_A Conserved hypothetical 35.4 15 0.00053 27.9 1.7 23 217-239 49-71 (145)
290 3j20_Y 30S ribosomal protein S 34.6 16 0.00054 22.6 1.3 24 148-173 19-46 (50)
291 3u5c_f 40S ribosomal protein S 33.8 21 0.00072 27.3 2.2 26 148-173 118-147 (152)
292 2lcq_A Putative toxin VAPC6; P 32.7 27 0.00093 26.7 2.8 27 212-238 129-157 (165)
293 4eyt_A Telomerase associated p 32.4 1.3E+02 0.0044 21.0 7.6 56 4-75 11-66 (129)
294 1xn9_A 30S ribosomal protein S 31.4 83 0.0028 22.3 4.9 50 15-71 28-80 (101)
295 4ev1_A Anabena TIC22; TIC22 fo 29.8 1.5E+02 0.005 24.7 6.9 61 17-77 2-63 (252)
296 1xwh_A Autoimmune regulator; P 29.5 39 0.0013 21.7 2.7 26 144-173 4-29 (66)
297 3j21_T 50S ribosomal protein L 29.3 1E+02 0.0034 21.2 4.9 58 7-73 24-81 (86)
298 1x62_A C-terminal LIM domain p 26.9 72 0.0025 20.7 3.8 24 214-237 14-46 (79)
299 2cu8_A Cysteine-rich protein 2 26.9 51 0.0017 21.3 3.0 24 214-237 8-41 (76)
300 2xzm_P RPS24E; ribosome, trans 24.0 1.5E+02 0.0052 22.6 5.4 50 15-71 31-83 (149)
301 1a7i_A QCRP2 (LIM1); LIM domai 23.6 32 0.0011 22.6 1.5 24 214-237 6-39 (81)
302 3nyb_B Protein AIR2; polya RNA 22.6 34 0.0012 23.4 1.4 15 163-177 4-18 (83)
303 1ywx_A 30S ribosomal protein S 21.7 1.7E+02 0.0059 20.7 5.1 49 15-70 28-79 (102)
304 3bn7_A Ferredoxin-like protein 21.4 2.2E+02 0.0075 20.3 5.9 61 8-70 24-91 (120)
305 3qt1_I DNA-directed RNA polyme 21.1 59 0.002 24.3 2.6 25 216-240 25-57 (133)
306 2lfv_A Protein DAMX; cell divi 26.2 21 0.00071 25.7 0.0 54 15-78 32-87 (106)
307 2yql_A PHD finger protein 21A; 20.7 85 0.0029 19.3 3.0 25 145-173 6-30 (56)
No 1
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.87 E-value=1.4e-21 Score=145.11 Aligned_cols=82 Identities=26% Similarity=0.329 Sum_probs=78.4
Q ss_pred CCCCeEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 025700 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (249)
Q Consensus 3 ~~~~tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~~~g 82 (249)
.+.++|||+|||.++|+++|+++|++||.|.. |+|++|+.|++++|||||+|.++++|++||+.||+..|.|
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~--------v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g 88 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVES--------AKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQS 88 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEE--------EEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEE--------eEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECC
Confidence 45689999999999999999999999999998 8899999999999999999999999999999999999999
Q ss_pred eEEEEEeccc
Q 025700 83 NLIGVFIAES 92 (249)
Q Consensus 83 ~~i~V~~a~~ 92 (249)
+.|+|++|+|
T Consensus 89 r~l~V~~AkP 98 (99)
T 4fxv_A 89 KTIKVSYARP 98 (99)
T ss_dssp EECEEEECCB
T ss_pred EEEEEEEeeC
Confidence 9999999976
No 2
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.85 E-value=1.4e-21 Score=142.85 Aligned_cols=85 Identities=20% Similarity=0.280 Sum_probs=77.6
Q ss_pred CCeEEecCCCCCCCHHHHHHHHHhcC-CeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhC-CceecC
Q 025700 5 NGSVYVCNLPHGTDEDMLAEYFGTIG-LLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFN-NKDFHG 82 (249)
Q Consensus 5 ~~tI~V~nLp~~~te~dL~~~F~~~G-~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~-g~~~~g 82 (249)
+++|||+|||+++||++|+++|++|| .|.. |+|++++.|++++|||||+|.++++|++||+.++ +..|.|
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~--------v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~g 72 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQARE--------VRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILG 72 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSB--------CCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEE--------EEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECC
Confidence 57999999999999999999999999 6877 7799999999999999999999999999999874 567999
Q ss_pred eEEEEEecccCCCCC
Q 025700 83 NLIGVFIAESRGKDD 97 (249)
Q Consensus 83 ~~i~V~~a~~~~~~~ 97 (249)
++|+|++|.++++..
T Consensus 73 r~i~V~~a~~~~~~~ 87 (91)
T 2lxi_A 73 QKVSMHYSDPKPKIN 87 (91)
T ss_dssp EEEEEECCCSCCCCS
T ss_pred EEEEEEEcCCCCCCC
Confidence 999999999876543
No 3
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.84 E-value=1.4e-20 Score=142.40 Aligned_cols=85 Identities=18% Similarity=0.187 Sum_probs=80.2
Q ss_pred CCCCCeEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceec
Q 025700 2 TMANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFH 81 (249)
Q Consensus 2 ~~~~~tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~~~ 81 (249)
.++..+|||+|||+++|+++|+++|++||.|.. |+|++|+.|++++|||||+|++.++|++||+.||+..|.
T Consensus 3 ~~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~--------v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~ 74 (110)
T 3s8s_A 3 QIPLKEVTFARLNDNVRETFLKDMCRKYGEVEE--------VEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVM 74 (110)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEE--------EEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCcEEEEECCCCCCCHHHHHHHHHhcCCeeE--------EEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 357889999999999999999999999999998 889999999999999999999999999999999999999
Q ss_pred CeEEEEEecccCC
Q 025700 82 GNLIGVFIAESRG 94 (249)
Q Consensus 82 g~~i~V~~a~~~~ 94 (249)
|+.|+|+++....
T Consensus 75 gr~i~V~~a~~~~ 87 (110)
T 3s8s_A 75 GNIIHAQLDIKGQ 87 (110)
T ss_dssp TEECEEEECSTTH
T ss_pred CeEEEEEECCCCc
Confidence 9999999987543
No 4
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.7e-20 Score=141.72 Aligned_cols=94 Identities=45% Similarity=0.732 Sum_probs=87.1
Q ss_pred CCCCeEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 025700 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (249)
Q Consensus 3 ~~~~tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~~~g 82 (249)
.++.+|||+|||.++|+++|+++|.+||.|..+..++.|.|+|+.++.|++++|||||+|.++++|++||+.|++..|.+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 92 (113)
T 2cpe_A 13 SDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQG 92 (113)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCC
Confidence 35789999999999999999999999999997767777789999999999999999999999999999999999999999
Q ss_pred eEEEEEecccCCCC
Q 025700 83 NLIGVFIAESRGKD 96 (249)
Q Consensus 83 ~~i~V~~a~~~~~~ 96 (249)
+.|+|++++++...
T Consensus 93 ~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 93 SKLKVSLARKKPPM 106 (113)
T ss_dssp EECEEECSSCCCCS
T ss_pred CEEEEEECCCCCCC
Confidence 99999999876553
No 5
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.84 E-value=1.6e-20 Score=149.97 Aligned_cols=85 Identities=24% Similarity=0.251 Sum_probs=80.3
Q ss_pred CCCCeEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 025700 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (249)
Q Consensus 3 ~~~~tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~~~g 82 (249)
.++.+|||+|||.++|+++|+++|++||.|.. |+|+.++.|+++++||||+|.++++|++||+.|++..|.+
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 108 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKK--------IIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDD 108 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEE--------EEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEE--------EEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 46789999999999999999999999999998 8899999999999999999999999999999999999999
Q ss_pred eEEEEEecccCCC
Q 025700 83 NLIGVFIAESRGK 95 (249)
Q Consensus 83 ~~i~V~~a~~~~~ 95 (249)
+.|+|+++++...
T Consensus 109 ~~l~V~~a~~~~~ 121 (156)
T 1h2v_Z 109 RIIRTDWDAGFKE 121 (156)
T ss_dssp EECEEEEESCCCT
T ss_pred eEEEEEECCCCCC
Confidence 9999999987544
No 6
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.9e-20 Score=138.87 Aligned_cols=88 Identities=27% Similarity=0.384 Sum_probs=82.5
Q ss_pred CCCCCCeEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcee
Q 025700 1 MTMANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDF 80 (249)
Q Consensus 1 m~~~~~tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~~ 80 (249)
|..++.+|||+|||.++|+++|+++|.+||.|.. |+|++++.++++++||||+|.++++|++||+.|++..|
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~--------v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 79 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISE--------VVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSV 79 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCE--------EEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCT
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEE--------EEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEE
Confidence 4567899999999999999999999999999988 88999999999999999999999999999999999999
Q ss_pred cCeEEEEEecccCCCC
Q 025700 81 HGNLIGVFIAESRGKD 96 (249)
Q Consensus 81 ~g~~i~V~~a~~~~~~ 96 (249)
.++.|+|++++++...
T Consensus 80 ~g~~l~v~~a~~~~~~ 95 (102)
T 1x5s_A 80 DGRQIRVDQAGKSSDN 95 (102)
T ss_dssp TSCCCEEEEEECCCCC
T ss_pred CCeEEEEEECCCCCCC
Confidence 9999999999877653
No 7
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=2.6e-20 Score=136.51 Aligned_cols=87 Identities=24% Similarity=0.341 Sum_probs=81.4
Q ss_pred CCCCCeEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeE-EEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcee
Q 025700 2 TMANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKV-WLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDF 80 (249)
Q Consensus 2 ~~~~~tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V-~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~~ 80 (249)
.+++.+|||+|||.++|+++|+++|++||.|.. | +|++++.++++++||||+|.++++|++||+.|++..|
T Consensus 2 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~--------~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~ 73 (96)
T 1x5t_A 2 SSGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQ--------TPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYL 73 (96)
T ss_dssp CSCCCEEEEECCCTTCCHHHHHHHHHTTSCBSS--------CCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeE--------EEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEE
Confidence 367899999999999999999999999999987 6 8999989999999999999999999999999999999
Q ss_pred cCeEEEEEecccCCCC
Q 025700 81 HGNLIGVFIAESRGKD 96 (249)
Q Consensus 81 ~g~~i~V~~a~~~~~~ 96 (249)
.++.|+|+++.++...
T Consensus 74 ~g~~l~v~~a~~~~~~ 89 (96)
T 1x5t_A 74 CNRPITVSYAFKKDSK 89 (96)
T ss_dssp TTEECEEEESCCCCCC
T ss_pred CCEEEEEEEecccCCC
Confidence 9999999999877653
No 8
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.9e-20 Score=138.83 Aligned_cols=89 Identities=25% Similarity=0.333 Sum_probs=82.9
Q ss_pred CCCCCCeEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcee
Q 025700 1 MTMANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDF 80 (249)
Q Consensus 1 m~~~~~tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~~ 80 (249)
|..+..+|||+|||.++|+++|+++|.+||.|.. |+|++++.++++++||||+|.++++|++||+.|++..|
T Consensus 8 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~--------v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 79 (102)
T 2cqb_A 8 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITD--------IQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESEL 79 (102)
T ss_dssp SCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCC--------EECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEE--------EEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEE
Confidence 4567899999999999999999999999999988 88999999999999999999999999999999999999
Q ss_pred cCeEEEEEecccCCCCC
Q 025700 81 HGNLIGVFIAESRGKDD 97 (249)
Q Consensus 81 ~g~~i~V~~a~~~~~~~ 97 (249)
.++.|+|.+++++....
T Consensus 80 ~g~~l~V~~a~~~~~~~ 96 (102)
T 2cqb_A 80 FGRTIRVNLAKPMRIKE 96 (102)
T ss_dssp TTEEEEEEECCCCCCCC
T ss_pred CCcEEEEEeCCCCCCCC
Confidence 99999999998876543
No 9
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=3.4e-20 Score=135.57 Aligned_cols=86 Identities=27% Similarity=0.378 Sum_probs=81.2
Q ss_pred CCCCCeEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceec
Q 025700 2 TMANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFH 81 (249)
Q Consensus 2 ~~~~~tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~~~ 81 (249)
.+++++|||+|||.++|+++|+++|++||.|.. |+|++++.|+++++||||+|.++++|++||+.|++..|.
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~--------v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 73 (95)
T 2dnz_A 2 SSGSSGLYVGSLHFNITEDMLRGIFEPFGKIDN--------IVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELA 73 (95)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEE--------EEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSS
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeE--------EEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeC
Confidence 357899999999999999999999999999998 889999999999999999999999999999999999999
Q ss_pred CeEEEEEecccCCC
Q 025700 82 GNLIGVFIAESRGK 95 (249)
Q Consensus 82 g~~i~V~~a~~~~~ 95 (249)
++.|+|++++++..
T Consensus 74 g~~l~V~~a~~~~~ 87 (95)
T 2dnz_A 74 GRPMRVGHVTERLD 87 (95)
T ss_dssp SSCCEEEESSCCCC
T ss_pred CcEEEEEEcccccC
Confidence 99999999987654
No 10
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=4.9e-20 Score=135.83 Aligned_cols=86 Identities=26% Similarity=0.351 Sum_probs=81.1
Q ss_pred CCCCeEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 025700 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (249)
Q Consensus 3 ~~~~tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~~~g 82 (249)
.++++|||+|||.++|+++|+++|.+||.|.. |+|++++.++++++||||+|.++++|++||+.|++..|.+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 77 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSE--------LHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQG 77 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEE--------EECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeE--------EEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 56789999999999999999999999999988 8899999899999999999999999999999999999999
Q ss_pred eEEEEEecccCCCC
Q 025700 83 NLIGVFIAESRGKD 96 (249)
Q Consensus 83 ~~i~V~~a~~~~~~ 96 (249)
+.|+|++++++...
T Consensus 78 ~~l~V~~a~~~~~~ 91 (99)
T 1whw_A 78 RMLHVLPSTIKKEA 91 (99)
T ss_dssp CEEEEEECCCCSTT
T ss_pred cEEEEEEcCCCccc
Confidence 99999999887654
No 11
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.83 E-value=8.9e-21 Score=139.82 Aligned_cols=82 Identities=22% Similarity=0.265 Sum_probs=75.1
Q ss_pred CCeEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCc----ee
Q 025700 5 NGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNK----DF 80 (249)
Q Consensus 5 ~~tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~----~~ 80 (249)
=+||||+|||+++|+++|+++|++||.+.... |+|++|+.|+++||||||+|.++++|++||+.||+. .|
T Consensus 9 m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~------v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i 82 (95)
T 2lkz_A 9 MDTIILRNIAPHTVVDSIMTALSPYASLAVNN------IRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKI 82 (95)
T ss_dssp CCEEEEESCCTTCCHHHHHHHSTTTCCCCGGG------EECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEE
T ss_pred cCEEEEeCCCCcCCHHHHHHHHHhhCCccEEE------EEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceE
Confidence 36899999999999999999999999765433 899999999999999999999999999999999986 58
Q ss_pred cCeEEEEEeccc
Q 025700 81 HGNLIGVFIAES 92 (249)
Q Consensus 81 ~g~~i~V~~a~~ 92 (249)
+|++|.|++|+.
T Consensus 83 ~Gr~i~V~~Aks 94 (95)
T 2lkz_A 83 DGKTIGVDFAKS 94 (95)
T ss_dssp TTEEEEEEECCC
T ss_pred CCEEEEEEEccC
Confidence 999999999874
No 12
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.83 E-value=4.6e-20 Score=132.60 Aligned_cols=83 Identities=19% Similarity=0.230 Sum_probs=76.7
Q ss_pred CCCCeEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 025700 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (249)
Q Consensus 3 ~~~~tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~~~g 82 (249)
.++.+|||+|||.++|+++|+++|++||.|.. |+|+.++.+++++|||||+|.++++|++||+.|++..+.|
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 75 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISD--------ARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGG 75 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEE--------EEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeE--------EEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 46789999999999999999999999999988 8899999999999999999999999999999999999999
Q ss_pred eEEEEEecccC
Q 025700 83 NLIGVFIAESR 93 (249)
Q Consensus 83 ~~i~V~~a~~~ 93 (249)
+.|+|++++++
T Consensus 76 ~~l~v~~a~~k 86 (87)
T 3bs9_A 76 RQIRTNWATRK 86 (87)
T ss_dssp EECEEEEEC--
T ss_pred eEEEEEecCCC
Confidence 99999999865
No 13
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.82 E-value=4.9e-20 Score=131.88 Aligned_cols=83 Identities=27% Similarity=0.362 Sum_probs=78.7
Q ss_pred CCCCCCeEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcee
Q 025700 1 MTMANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDF 80 (249)
Q Consensus 1 m~~~~~tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~~ 80 (249)
|..++++|||+|||.++++++|+++|++||.|.. |+|++++.++++++||||+|.++++|++||+.|++..|
T Consensus 3 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~--------v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~ 74 (85)
T 3mdf_A 3 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITD--------IQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESEL 74 (85)
T ss_dssp CCCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEE--------EECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHhccCCEEE--------EEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEE
Confidence 4578899999999999999999999999999988 88999989999999999999999999999999999999
Q ss_pred cCeEEEEEecc
Q 025700 81 HGNLIGVFIAE 91 (249)
Q Consensus 81 ~g~~i~V~~a~ 91 (249)
.|+.|+|++|+
T Consensus 75 ~g~~l~v~~ak 85 (85)
T 3mdf_A 75 FGRTIRVNLAK 85 (85)
T ss_dssp TTEECEEEECC
T ss_pred CCcEEEEEEcC
Confidence 99999999874
No 14
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.82 E-value=1.8e-19 Score=136.48 Aligned_cols=86 Identities=17% Similarity=0.207 Sum_probs=80.9
Q ss_pred CCCCeEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 025700 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (249)
Q Consensus 3 ~~~~tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~~~g 82 (249)
.+..+|||+|||.++|+++|+++|.+||.|.. |+|++++.++++++||||+|.++++|++||+.|++..|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 84 (115)
T 2dgo_A 13 SNHFHVFVGDLSPEITTEDIKAAFAPFGRISD--------ARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGG 84 (115)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHGGGSCEEE--------EEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETT
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEE--------EEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 46789999999999999999999999999988 8899999999999999999999999999999999999999
Q ss_pred eEEEEEecccCCCC
Q 025700 83 NLIGVFIAESRGKD 96 (249)
Q Consensus 83 ~~i~V~~a~~~~~~ 96 (249)
+.|+|.+++++...
T Consensus 85 ~~l~V~~a~~~~~~ 98 (115)
T 2dgo_A 85 RQIRTNWATRKPPA 98 (115)
T ss_dssp EECEEEESSCCCCC
T ss_pred EEEEEEEccCCCCC
Confidence 99999999877654
No 15
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.82 E-value=7.5e-20 Score=138.67 Aligned_cols=87 Identities=22% Similarity=0.310 Sum_probs=81.2
Q ss_pred CCCCeEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 025700 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (249)
Q Consensus 3 ~~~~tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~~~g 82 (249)
.+..+|||+|||.++|+++|+++|.+||.|.. |+|++++.++++++||||+|.++++|++||+.|++..|.+
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 94 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVS--------AKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGM 94 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSE--------EEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEE--------EEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECC
Confidence 35689999999999999999999999999988 8899999999999999999999999999999999999999
Q ss_pred eEEEEEecccCCCCC
Q 025700 83 NLIGVFIAESRGKDD 97 (249)
Q Consensus 83 ~~i~V~~a~~~~~~~ 97 (249)
+.|+|++++++....
T Consensus 95 ~~l~V~~a~~~~~~~ 109 (115)
T 2cpz_A 95 KRLKVQLKRSKNDSK 109 (115)
T ss_dssp EECEEECCCCSCCCC
T ss_pred EEEEEEEcCCCCcCC
Confidence 999999998876543
No 16
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.82 E-value=7.8e-20 Score=130.24 Aligned_cols=82 Identities=17% Similarity=0.232 Sum_probs=78.1
Q ss_pred CCeEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeE
Q 025700 5 NGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGNL 84 (249)
Q Consensus 5 ~~tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~~~g~~ 84 (249)
+.+|||+|||.++|+++|+++|.+||.|.. |++++++.++++++||||+|.++++|++|++.|++..|.|+.
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~--------~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~ 72 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLS--------GHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRP 72 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEE--------EEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeE--------EEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcE
Confidence 468999999999999999999999999998 889999999999999999999999999999999999999999
Q ss_pred EEEEecccCC
Q 025700 85 IGVFIAESRG 94 (249)
Q Consensus 85 i~V~~a~~~~ 94 (249)
|+|+++++++
T Consensus 73 l~v~~a~~~~ 82 (83)
T 3md1_A 73 LRINWAAKLE 82 (83)
T ss_dssp CEEEECCCCC
T ss_pred EEEEecCcCC
Confidence 9999998764
No 17
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1e-19 Score=138.09 Aligned_cols=85 Identities=26% Similarity=0.272 Sum_probs=79.0
Q ss_pred CCCCeEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 025700 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (249)
Q Consensus 3 ~~~~tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~~~g 82 (249)
.+.++|||+|||.++|+++|+++|.+||.|.. |+|++++.|+++++||||+|.++++|++||+.|++ .|.+
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g 85 (116)
T 2cqd_A 15 TTFTKIFVGGLPYHTTDASLRKYFEGFGDIEE--------AVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDG 85 (116)
T ss_dssp CSSSEEEEECCCSSCCHHHHHHHHHTTSCEEE--------EEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeE--------EEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCC
Confidence 45789999999999999999999999999988 88999999999999999999999999999999998 8999
Q ss_pred eEEEEEecccCCCC
Q 025700 83 NLIGVFIAESRGKD 96 (249)
Q Consensus 83 ~~i~V~~a~~~~~~ 96 (249)
+.|+|+++.+....
T Consensus 86 ~~l~V~~a~~~~~~ 99 (116)
T 2cqd_A 86 RKANVNLAYLGAKP 99 (116)
T ss_dssp EECEEEESTTTCCC
T ss_pred EEEEEEEcccCCCc
Confidence 99999999866443
No 18
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=7.2e-20 Score=134.69 Aligned_cols=87 Identities=23% Similarity=0.344 Sum_probs=80.3
Q ss_pred CCCCCeEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCC---CCCcccEEEEEeCCHHHHHHHHHHhCCc
Q 025700 2 TMANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKT---TNEYKGDATVTYEDPHAALAAVEWFNNK 78 (249)
Q Consensus 2 ~~~~~tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~---tg~~rG~aFV~F~s~~~A~~Ai~~l~g~ 78 (249)
..++++|||+|||.++|+++|+++|++||.|.. |+|++++. |+++++||||+|.++++|++||+.|++.
T Consensus 2 s~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~ 73 (98)
T 2cpf_A 2 SSGSSGLFIKNLNFSTTEETLKGVFSKVGAIKS--------CTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGH 73 (98)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEE--------EEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEE--------EEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCC
Confidence 357899999999999999999999999999988 88888876 6799999999999999999999999999
Q ss_pred eecCeEEEEEecccCCCC
Q 025700 79 DFHGNLIGVFIAESRGKD 96 (249)
Q Consensus 79 ~~~g~~i~V~~a~~~~~~ 96 (249)
.|.++.|.|++++++...
T Consensus 74 ~~~g~~l~V~~a~~~~~~ 91 (98)
T 2cpf_A 74 TVDGHKLEVRISERATKP 91 (98)
T ss_dssp EETTEECEEECSSCSSCC
T ss_pred eeCCeEEEEEEccCCCCC
Confidence 999999999999876553
No 19
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=7.6e-20 Score=134.92 Aligned_cols=86 Identities=27% Similarity=0.439 Sum_probs=80.4
Q ss_pred CCCCeEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 025700 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (249)
Q Consensus 3 ~~~~tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~~~g 82 (249)
.++.+|||+|||.++|+++|+++|.+||.|.. |+|++++.|+++++||||+|.++++|++||+ |++..|.+
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g 78 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTE--------VVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMG 78 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEE--------EEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEE--------EEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECC
Confidence 46789999999999999999999999999988 8899999999999999999999999999999 99999999
Q ss_pred eEEEEEecccCCCCC
Q 025700 83 NLIGVFIAESRGKDD 97 (249)
Q Consensus 83 ~~i~V~~a~~~~~~~ 97 (249)
+.|+|.+++++....
T Consensus 79 ~~l~V~~a~~~~~~~ 93 (99)
T 2dgs_A 79 KKVEVKRAEPRDSKS 93 (99)
T ss_dssp CBCEEEECCCCCCCC
T ss_pred eEEEEEECCCCcccC
Confidence 999999998776543
No 20
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=6.1e-20 Score=136.39 Aligned_cols=86 Identities=26% Similarity=0.355 Sum_probs=80.9
Q ss_pred CCCCeEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 025700 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (249)
Q Consensus 3 ~~~~tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~~~g 82 (249)
.++.+|||+|||.++|+++|+++|++||.|.. |+|++++.++++++||||+|.++++|++||+.|++..|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~--------v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 84 (103)
T 2cq0_A 13 DDNATIRVTNLSEDTRETDLQELFRPFGSISR--------IYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDH 84 (103)
T ss_dssp SSSEEEEEESCCTTCCHHHHHTTSTTTCCEEE--------EEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEE--------EEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCC
Confidence 45789999999999999999999999999998 8899999999999999999999999999999999999999
Q ss_pred eEEEEEecccCCCC
Q 025700 83 NLIGVFIAESRGKD 96 (249)
Q Consensus 83 ~~i~V~~a~~~~~~ 96 (249)
+.|+|++++++...
T Consensus 85 ~~l~v~~a~~~~~~ 98 (103)
T 2cq0_A 85 LILNVEWAKPSTNS 98 (103)
T ss_dssp EECEEEESSCCCCS
T ss_pred cEEEEEECCCCCCC
Confidence 99999999877553
No 21
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.82 E-value=4.1e-20 Score=142.25 Aligned_cols=86 Identities=28% Similarity=0.354 Sum_probs=80.6
Q ss_pred CCCCeEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 025700 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (249)
Q Consensus 3 ~~~~tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~~~g 82 (249)
.++.+|||+|||.++|+++|+++|.+||.|.. |+|+.++.|+++++||||+|.++++|++||+.|++..|.+
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 91 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKN--------IHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMG 91 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTTSCEEE--------EECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEE--------EEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCC
Confidence 45679999999999999999999999999988 8899999999999999999999999999999999999999
Q ss_pred eEEEEEecccCCCC
Q 025700 83 NLIGVFIAESRGKD 96 (249)
Q Consensus 83 ~~i~V~~a~~~~~~ 96 (249)
+.|.|+++.++...
T Consensus 92 ~~l~v~~a~~~~~~ 105 (126)
T 3ex7_B 92 QPISVDWCFVRGPP 105 (126)
T ss_dssp SBCEEEESEESSSC
T ss_pred eEEEEEEecCCCCC
Confidence 99999999877553
No 22
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.82 E-value=7e-21 Score=161.84 Aligned_cols=82 Identities=17% Similarity=0.266 Sum_probs=76.5
Q ss_pred CCCeEEecCCCCCCCHHHHHHHHHhcC--CeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceec
Q 025700 4 ANGSVYVCNLPHGTDEDMLAEYFGTIG--LLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFH 81 (249)
Q Consensus 4 ~~~tI~V~nLp~~~te~dL~~~F~~~G--~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~~~ 81 (249)
...+|||+|||+++|+++|+++|.+|| .|.. |+|++++.|++++|||||+|.+.++|++||+.||++.|.
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~--------v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~ 138 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILE--------IKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELH 138 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEE--------EEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBT
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEE--------EEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeEC
Confidence 457899999999999999999999999 8887 889999999999999999999999999999999999999
Q ss_pred CeEEEEEecccC
Q 025700 82 GNLIGVFIAESR 93 (249)
Q Consensus 82 g~~i~V~~a~~~ 93 (249)
++.|+|.+++++
T Consensus 139 Gr~l~V~~a~~~ 150 (229)
T 3q2s_C 139 GQNPVVTPVNKQ 150 (229)
T ss_dssp TBCCEEEECCHH
T ss_pred CEEeEEEECCCC
Confidence 999999998754
No 23
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.82 E-value=6.7e-20 Score=135.32 Aligned_cols=89 Identities=40% Similarity=0.777 Sum_probs=83.1
Q ss_pred CCCCeEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 025700 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (249)
Q Consensus 3 ~~~~tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~~~g 82 (249)
.+..+|||+|||.++|+++|+++|++||.|..+..++.|.|+|++++.|++++|||||+|.+.++|++||+.|++..|.|
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g 90 (99)
T 2la6_A 11 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 90 (99)
T ss_dssp CCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 46789999999999999999999999999988666777778999999999999999999999999999999999999999
Q ss_pred eEEEEEecc
Q 025700 83 NLIGVFIAE 91 (249)
Q Consensus 83 ~~i~V~~a~ 91 (249)
+.|+|++|+
T Consensus 91 ~~l~V~~A~ 99 (99)
T 2la6_A 91 NPIKVSFAT 99 (99)
T ss_dssp SBCEEEECC
T ss_pred cEEEEEecC
Confidence 999999874
No 24
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=6.4e-20 Score=136.31 Aligned_cols=86 Identities=24% Similarity=0.276 Sum_probs=80.5
Q ss_pred CCCCeEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 025700 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (249)
Q Consensus 3 ~~~~tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~~~g 82 (249)
.+..+|||+|||.++|+++|+++|.+||.|.. |+|+.++.|+++++||||+|.++++|++||+.|++..|.+
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~--------v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 82 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGD--------VYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDG 82 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEE--------EECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTT
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEE--------EEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 45789999999999999999999999999988 8899999999999999999999999999999999999999
Q ss_pred eEEEEEecccCCCC
Q 025700 83 NLIGVFIAESRGKD 96 (249)
Q Consensus 83 ~~i~V~~a~~~~~~ 96 (249)
+.|+|+++++....
T Consensus 83 ~~l~V~~a~~~~~~ 96 (103)
T 2dnm_A 83 RELRVQVARYGRRD 96 (103)
T ss_dssp BCCEEEECSSCCSC
T ss_pred cEEEEEECCcCCCC
Confidence 99999999876543
No 25
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.1e-19 Score=135.40 Aligned_cols=86 Identities=23% Similarity=0.283 Sum_probs=80.9
Q ss_pred CCCCeEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 025700 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (249)
Q Consensus 3 ~~~~tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~~~g 82 (249)
.++.+|||+|||.++|+++|+++|.+||.|.. |+|+.++.+++++|||||+|.++++|++||+.|++..|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 84 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVN--------THMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYG 84 (105)
T ss_dssp CTTTEEEEECCCTTCCHHHHHHHHHTTSCEEE--------EECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEE--------EEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECC
Confidence 45789999999999999999999999999988 8899999999999999999999999999999999999999
Q ss_pred eEEEEEecccCCCC
Q 025700 83 NLIGVFIAESRGKD 96 (249)
Q Consensus 83 ~~i~V~~a~~~~~~ 96 (249)
+.|+|.+++++...
T Consensus 85 ~~l~v~~a~~~~~~ 98 (105)
T 1x5u_A 85 KPIRVNKASAHNKN 98 (105)
T ss_dssp CBCEEEETTTTSCC
T ss_pred eEEEEEECCCCCcC
Confidence 99999999877654
No 26
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.81 E-value=1.3e-19 Score=133.08 Aligned_cols=84 Identities=17% Similarity=0.269 Sum_probs=79.9
Q ss_pred CCCeEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCe
Q 025700 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGN 83 (249)
Q Consensus 4 ~~~tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~~~g~ 83 (249)
++++|||+|||.++++++|+++|++||.|.. |+|+.++.+++++|||||+|.+.++|++||+.|++..|.|+
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 72 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVIN--------LKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSR 72 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEE--------EECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEE--------EEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCe
Confidence 5789999999999999999999999999998 88999999999999999999999999999999999999999
Q ss_pred EEEEEecccCCC
Q 025700 84 LIGVFIAESRGK 95 (249)
Q Consensus 84 ~i~V~~a~~~~~ 95 (249)
.|+|++++++..
T Consensus 73 ~l~V~~a~~~~~ 84 (96)
T 2x1f_A 73 FLKCGYSSNSDI 84 (96)
T ss_dssp ECEEEECSCSSG
T ss_pred EEEEEEcCCCCC
Confidence 999999987654
No 27
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=1.9e-19 Score=135.27 Aligned_cols=87 Identities=23% Similarity=0.285 Sum_probs=81.1
Q ss_pred CCCCeEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhC------
Q 025700 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFN------ 76 (249)
Q Consensus 3 ~~~~tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~------ 76 (249)
.++.+|||+|||.++|+++|+++|.+||.|.. |+|++++.|++++|||||+|.+.++|++||+.|+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~ 84 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKY--------VRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGG 84 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEE--------EECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEE--------EEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccC
Confidence 45789999999999999999999999999988 8899999999999999999999999999999999
Q ss_pred CceecCeEEEEEecccCCCCC
Q 025700 77 NKDFHGNLIGVFIAESRGKDD 97 (249)
Q Consensus 77 g~~~~g~~i~V~~a~~~~~~~ 97 (249)
+..|.++.|+|.++.++....
T Consensus 85 ~~~~~g~~l~v~~a~~~~~~~ 105 (111)
T 1x4h_A 85 GLKLDGRQLKVDLAVTRDEAA 105 (111)
T ss_dssp CEESSSCEEEEECCCCCCCCC
T ss_pred CcEEcCEEEEEEECCCCccCC
Confidence 999999999999998775543
No 28
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=2.2e-19 Score=132.70 Aligned_cols=84 Identities=25% Similarity=0.358 Sum_probs=78.9
Q ss_pred CCCCeEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 025700 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (249)
Q Consensus 3 ~~~~tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~~~g 82 (249)
.++.+|||+|||.++|+++|+++|.+||.|.. |+|+.++ ++++++||||+|.++++|++||+.|++..|.+
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 85 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAHGTVKD--------LRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKE 85 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEE--------EEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEE--------EEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 45789999999999999999999999999988 8899998 89999999999999999999999999999999
Q ss_pred eEEEEEecccCCC
Q 025700 83 NLIGVFIAESRGK 95 (249)
Q Consensus 83 ~~i~V~~a~~~~~ 95 (249)
+.|+|.+++++..
T Consensus 86 ~~l~v~~a~~~~~ 98 (100)
T 2do4_A 86 NIIKVAISNSGPS 98 (100)
T ss_dssp CEEEEEECCCCSC
T ss_pred EEEEEEECCCCCC
Confidence 9999999987654
No 29
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.81 E-value=3.2e-19 Score=139.51 Aligned_cols=85 Identities=21% Similarity=0.274 Sum_probs=80.1
Q ss_pred CCCeEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCe
Q 025700 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGN 83 (249)
Q Consensus 4 ~~~tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~~~g~ 83 (249)
+.++|||+|||.++|+++|+++|++||.|.. |+|++++.|++++|||||+|.+.++|++||+.|++..|.++
T Consensus 41 ~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~--------v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 112 (139)
T 1u6f_A 41 VLRNLMVNYIPTTVDEVQLRQLFERYGPIES--------VKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNK 112 (139)
T ss_dssp TTSEEEEESCSTTCCHHHHHHHHHHHSCEEE--------EEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEE--------EEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCe
Confidence 4589999999999999999999999999998 88999999999999999999999999999999999999999
Q ss_pred EEEEEecccCCCC
Q 025700 84 LIGVFIAESRGKD 96 (249)
Q Consensus 84 ~i~V~~a~~~~~~ 96 (249)
.|+|.+++++...
T Consensus 113 ~l~v~~a~~~~~~ 125 (139)
T 1u6f_A 113 RLKVALAASGHQR 125 (139)
T ss_dssp EEEEEESSCCCCC
T ss_pred EEEEEECCCCCCC
Confidence 9999999876543
No 30
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.81 E-value=2.6e-19 Score=136.41 Aligned_cols=85 Identities=32% Similarity=0.467 Sum_probs=79.4
Q ss_pred CCCCCeEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceec
Q 025700 2 TMANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFH 81 (249)
Q Consensus 2 ~~~~~tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~~~ 81 (249)
..++.+|||+|||.++|+++|+++|++||.|.. |.|+.++ +++++|||||+|.+.++|++||+.|++..|.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~ 74 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISE--------VLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLH 74 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSE--------EEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEE--------EEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 456789999999999999999999999999988 8899998 8999999999999999999999999999999
Q ss_pred CeEEEEEecccCCC
Q 025700 82 GNLIGVFIAESRGK 95 (249)
Q Consensus 82 g~~i~V~~a~~~~~ 95 (249)
++.|+|++++++..
T Consensus 75 g~~l~V~~a~~~~~ 88 (116)
T 2fy1_A 75 GKAIKVEQAKKPSF 88 (116)
T ss_dssp SSBCEEEECCCSSC
T ss_pred CEEEEEEECCCCCC
Confidence 99999999987654
No 31
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=2.1e-19 Score=134.19 Aligned_cols=87 Identities=22% Similarity=0.269 Sum_probs=80.7
Q ss_pred CCCCeEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEec-CCCCCcccEEEEEeCCHHHHHHHHHHh-CCcee
Q 025700 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRD-KTTNEYKGDATVTYEDPHAALAAVEWF-NNKDF 80 (249)
Q Consensus 3 ~~~~tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d-~~tg~~rG~aFV~F~s~~~A~~Ai~~l-~g~~~ 80 (249)
.++.+|||+|||.++|+++|+++|.+||.|.. |+|+++ +.++++++||||+|.++++|++||+.| ++..|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~ 84 (107)
T 2cph_A 13 QTTSKILVRNIPFQANQREIRELFSTFGELKT--------VRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHL 84 (107)
T ss_dssp SCCCCEEEESCCTTCCHHHHHHHHHTTSCEEE--------EECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBS
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHccCCeEE--------EEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeE
Confidence 45789999999999999999999999999998 888888 789999999999999999999999999 99999
Q ss_pred cCeEEEEEecccCCCCC
Q 025700 81 HGNLIGVFIAESRGKDD 97 (249)
Q Consensus 81 ~g~~i~V~~a~~~~~~~ 97 (249)
.++.|+|++++++....
T Consensus 85 ~g~~l~v~~a~~~~~~~ 101 (107)
T 2cph_A 85 YGRRLVLEWADSEVTVQ 101 (107)
T ss_dssp SSCBCEEEECCCCCCCC
T ss_pred CCCEEEEEeCCCCCCCC
Confidence 99999999998876543
No 32
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.8e-19 Score=131.53 Aligned_cols=82 Identities=28% Similarity=0.239 Sum_probs=77.7
Q ss_pred CCCCeEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 025700 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (249)
Q Consensus 3 ~~~~tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~~~g 82 (249)
.++.+|||+|||.++|+++|+++|++||.|.. |+|++++.++++++||||+|.++++|++||+.|++..|.+
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~--------v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 84 (95)
T 2cqc_A 13 DPNCCLGVFGLSLYTTERDLREVFSKYGPIAD--------VSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDG 84 (95)
T ss_dssp CGGGCEEEESCCSSCCHHHHHHHHHTTSCEEE--------EEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeeE--------EEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 45689999999999999999999999999988 8899999999999999999999999999999999999999
Q ss_pred eEEEEEeccc
Q 025700 83 NLIGVFIAES 92 (249)
Q Consensus 83 ~~i~V~~a~~ 92 (249)
+.|+|+++++
T Consensus 85 ~~l~v~~a~~ 94 (95)
T 2cqc_A 85 RRIRVSGPSS 94 (95)
T ss_dssp EEEEEECCSC
T ss_pred EEEEEEecCC
Confidence 9999999864
No 33
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.81 E-value=3.5e-20 Score=134.66 Aligned_cols=82 Identities=17% Similarity=0.255 Sum_probs=71.8
Q ss_pred CeEEecCCCCCCCHHHHHHHHHhcC--CeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCe
Q 025700 6 GSVYVCNLPHGTDEDMLAEYFGTIG--LLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGN 83 (249)
Q Consensus 6 ~tI~V~nLp~~~te~dL~~~F~~~G--~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~~~g~ 83 (249)
.+|||+|||.++|+++|+++|++|| .|.. |+|+.++.|++++|||||+|.+.++|++||+.||+..|.|+
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~--------v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr 73 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILE--------IKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQ 73 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCC--------EEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEE--------EEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCE
Confidence 5899999999999999999999999 7776 88999999999999999999999999999999999999999
Q ss_pred EEEEEecccCCC
Q 025700 84 LIGVFIAESRGK 95 (249)
Q Consensus 84 ~i~V~~a~~~~~ 95 (249)
.|+|.++.+...
T Consensus 74 ~i~V~~~~~~~~ 85 (90)
T 3p5t_L 74 NPVVTPSNKLEH 85 (90)
T ss_dssp CCEECCC-----
T ss_pred EEEEEECCCCcc
Confidence 999999987654
No 34
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.81 E-value=1.6e-19 Score=134.77 Aligned_cols=87 Identities=23% Similarity=0.295 Sum_probs=80.5
Q ss_pred CCCCCeEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcee-
Q 025700 2 TMANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDF- 80 (249)
Q Consensus 2 ~~~~~tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~~- 80 (249)
..+..+|||+|||.++|+++|+++|.+||.|.. |+|+.++.|+++++||||+|.+.++|++||+.|++..+
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 81 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYE--------LTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTL 81 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCE--------EECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeE--------EEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCccc
Confidence 356789999999999999999999999999988 88999999999999999999999999999999999987
Q ss_pred --cCeEEEEEecccCCCC
Q 025700 81 --HGNLIGVFIAESRGKD 96 (249)
Q Consensus 81 --~g~~i~V~~a~~~~~~ 96 (249)
.++.|+|.++.++...
T Consensus 82 ~~~g~~l~v~~a~~~~~~ 99 (106)
T 2dgp_A 82 PGMNRPIQVKPADSESRG 99 (106)
T ss_dssp TTCSSCCEEEECCCCSCC
T ss_pred CCCCceEEEEECCccccc
Confidence 8899999999876543
No 35
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=2e-19 Score=134.12 Aligned_cols=85 Identities=28% Similarity=0.361 Sum_probs=79.8
Q ss_pred CCCCeEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 025700 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (249)
Q Consensus 3 ~~~~tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~~~g 82 (249)
.++.+|||+|||.++|+++|+++|++||.|.. |+|+.++.|++++|||||+|.+.++|++||+.|++..|.|
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~--------v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 92 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKN--------IHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMG 92 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEE--------EEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEE--------EEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECC
Confidence 34678999999999999999999999999998 8899999999999999999999999999999999999999
Q ss_pred eEEEEEecccCCC
Q 025700 83 NLIGVFIAESRGK 95 (249)
Q Consensus 83 ~~i~V~~a~~~~~ 95 (249)
+.|+|++++++..
T Consensus 93 ~~l~V~~a~~~~~ 105 (106)
T 1p27_B 93 QPISVDWCFVRGP 105 (106)
T ss_dssp SBCEEEESEESSC
T ss_pred cEEEEEeecCCCC
Confidence 9999999987643
No 36
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.81 E-value=2.9e-19 Score=132.84 Aligned_cols=84 Identities=27% Similarity=0.402 Sum_probs=78.0
Q ss_pred CCCCeEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 025700 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (249)
Q Consensus 3 ~~~~tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~~~g 82 (249)
.+..+|||+|||.++|+++|+++|.+|+ |.. |+|++++.|++++|||||+|.++++|++|| .|++..|.+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~--------v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g 82 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRS--------VRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGD 82 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHHTTTSC-EEE--------EEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETT
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceE--------EEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECC
Confidence 4578999999999999999999999997 777 889999999999999999999999999999 799999999
Q ss_pred eEEEEEecccCCCC
Q 025700 83 NLIGVFIAESRGKD 96 (249)
Q Consensus 83 ~~i~V~~a~~~~~~ 96 (249)
+.|+|+++.++...
T Consensus 83 ~~l~V~~a~~~~~~ 96 (103)
T 2dng_A 83 RSLRVDIAEGRKQD 96 (103)
T ss_dssp EECEEEECCCCCCC
T ss_pred eEEEEEEecCCCCC
Confidence 99999999876543
No 37
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=1.7e-19 Score=131.54 Aligned_cols=82 Identities=32% Similarity=0.425 Sum_probs=77.6
Q ss_pred CCCCCeEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceec
Q 025700 2 TMANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFH 81 (249)
Q Consensus 2 ~~~~~tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~~~ 81 (249)
.+++++|||+|||.++|+++|+++|.+||.|.. |+|+.++.++++++||||+|.++++|++||+.|++..|.
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~--------v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 84 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVK--------VTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLF 84 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEE--------EEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEET
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEE--------EEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeC
Confidence 356789999999999999999999999999998 889999999999999999999999999999999999999
Q ss_pred CeEEEEEecc
Q 025700 82 GNLIGVFIAE 91 (249)
Q Consensus 82 g~~i~V~~a~ 91 (249)
++.|+|++|+
T Consensus 85 g~~l~v~~ak 94 (94)
T 2e5h_A 85 GRVIKASIAI 94 (94)
T ss_dssp TEEEEEEECC
T ss_pred CcEEEEEecC
Confidence 9999999974
No 38
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=2.4e-19 Score=132.13 Aligned_cols=85 Identities=22% Similarity=0.273 Sum_probs=79.4
Q ss_pred CCCCCeEEecCCCCCCCHHHHHHHHHhcCCee-ecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcee
Q 025700 2 TMANGSVYVCNLPHGTDEDMLAEYFGTIGLLK-KDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDF 80 (249)
Q Consensus 2 ~~~~~tI~V~nLp~~~te~dL~~~F~~~G~i~-~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~~ 80 (249)
..++.+|||+|||.++|+++|+++|.+||.|. . |+|++++.|+++++||||+|.++++|++||+.||+..|
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~--------v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~ 77 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMS--------VKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPL 77 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCE--------EEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceE--------EEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCcc
Confidence 35678999999999999999999999999998 7 88999999999999999999999999999999999999
Q ss_pred cCeE----EEEEecccCC
Q 025700 81 HGNL----IGVFIAESRG 94 (249)
Q Consensus 81 ~g~~----i~V~~a~~~~ 94 (249)
.++. |+|+++++..
T Consensus 78 ~g~~~~~~l~v~~a~~~~ 95 (99)
T 2div_A 78 PGATPAKRFKLNYATYSG 95 (99)
T ss_dssp SSCSSCEECCEEETTCCS
T ss_pred CCCCcceeEEEeecCCCC
Confidence 9999 9999987653
No 39
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.80 E-value=3.8e-19 Score=132.41 Aligned_cols=86 Identities=17% Similarity=0.227 Sum_probs=79.6
Q ss_pred CCCCeEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 025700 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (249)
Q Consensus 3 ~~~~tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~~~g 82 (249)
.++.+|||+|||.++|+++|+++|.+||.|.. |+|++++ ++++++||||+|.+.++|++||+.|++..+.+
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 83 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDE--------CTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMP 83 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEE--------EEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEE--------EEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCC
Confidence 45789999999999999999999999999998 8899988 79999999999999999999999999999998
Q ss_pred ---eEEEEEecccCCCCC
Q 025700 83 ---NLIGVFIAESRGKDD 97 (249)
Q Consensus 83 ---~~i~V~~a~~~~~~~ 97 (249)
+.|.|.+++++....
T Consensus 84 g~~~~l~V~~a~~~~~~~ 101 (105)
T 2dnh_A 84 GASSSLVVKFADTDKESG 101 (105)
T ss_dssp TCSSCCEEEESCSSCCCS
T ss_pred CCCccEEEEECccCcccC
Confidence 999999998876543
No 40
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=9.9e-19 Score=132.05 Aligned_cols=84 Identities=25% Similarity=0.320 Sum_probs=77.9
Q ss_pred CCCCeEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 025700 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (249)
Q Consensus 3 ~~~~tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~~~g 82 (249)
.++.+|||+|||.++|+++|+++|.+||.|.. |+|++++ ++++++||||+|.+.++|++||+.|++..|.+
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~--------~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 83 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVVR--------ADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFD 83 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEE--------EEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEE--------EEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 45789999999999999999999999999988 8899988 59999999999999999999999999999999
Q ss_pred eEEEEEecccCCC
Q 025700 83 NLIGVFIAESRGK 95 (249)
Q Consensus 83 ~~i~V~~a~~~~~ 95 (249)
+.|+|++++....
T Consensus 84 ~~l~v~~a~~~~~ 96 (114)
T 2do0_A 84 RPMHVKMDERALP 96 (114)
T ss_dssp EECEEEECSCCCC
T ss_pred CEEEEEEcccCCC
Confidence 9999999876544
No 41
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=3e-19 Score=132.76 Aligned_cols=85 Identities=19% Similarity=0.179 Sum_probs=79.4
Q ss_pred CCCCeEEecCCCCCCCHHHHHHHHHh-cCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCce-e
Q 025700 3 MANGSVYVCNLPHGTDEDMLAEYFGT-IGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKD-F 80 (249)
Q Consensus 3 ~~~~tI~V~nLp~~~te~dL~~~F~~-~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~-~ 80 (249)
.++.+|||+|||.++|+++|+++|.+ ||.|.. |+|++++ ++++++||||+|.+.++|++||+.|++.. |
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~--------v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 77 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRG--------GKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGL 77 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEE--------EEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEE--------EEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCccc
Confidence 56789999999999999999999999 999988 8899998 89999999999999999999999999999 9
Q ss_pred cCeEEEEEecccCCCC
Q 025700 81 HGNLIGVFIAESRGKD 96 (249)
Q Consensus 81 ~g~~i~V~~a~~~~~~ 96 (249)
.++.|.|+++.++...
T Consensus 78 ~g~~l~v~~a~~~~~~ 93 (104)
T 2dhg_A 78 GSKPVRLSVAIPKASR 93 (104)
T ss_dssp SSSCCCCCBCCCCCSC
T ss_pred CCEeEEEEEccCCCcC
Confidence 9999999999876543
No 42
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=3e-19 Score=132.60 Aligned_cols=85 Identities=22% Similarity=0.305 Sum_probs=78.9
Q ss_pred CCCCeEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 025700 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (249)
Q Consensus 3 ~~~~tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~~~g 82 (249)
.+..+|||+|||+++|+++|+++|.+||.|.. |+|+.+ ++++++||||+|.+.++|++||+.|++..|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~--------v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 82 (103)
T 2d9p_A 13 YQVVNLYVKNLDDGIDDERLRKAFSPFGTITS--------AKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 82 (103)
T ss_dssp SSCCCEEEECCCTTCCHHHHHHTTTTTSCEEE--------EEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEE--------EEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 46789999999999999999999999999988 778887 79999999999999999999999999999999
Q ss_pred eEEEEEecccCCCCC
Q 025700 83 NLIGVFIAESRGKDD 97 (249)
Q Consensus 83 ~~i~V~~a~~~~~~~ 97 (249)
+.|.|++++++....
T Consensus 83 ~~l~V~~a~~~~~~~ 97 (103)
T 2d9p_A 83 KPLYVALAQRKEERQ 97 (103)
T ss_dssp SBCEEEECSSCCCCC
T ss_pred cEEEEEEecccccCC
Confidence 999999998876543
No 43
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.80 E-value=2.7e-19 Score=128.70 Aligned_cols=84 Identities=23% Similarity=0.288 Sum_probs=78.1
Q ss_pred CCCCeEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCC-cccEEEEEeCCHHHHHHHHHHhCCceec
Q 025700 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNE-YKGDATVTYEDPHAALAAVEWFNNKDFH 81 (249)
Q Consensus 3 ~~~~tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~-~rG~aFV~F~s~~~A~~Ai~~l~g~~~~ 81 (249)
.++++|||+|||.++|+++|+++|++||.|.. |+|+.++.++. +++||||+|.++++|++|++.|++..|.
T Consensus 2 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~--------~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 73 (88)
T 4a8x_A 2 MKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKM--------IDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQID 73 (88)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTTSCEEE--------EECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEE--------EEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeEC
Confidence 46789999999999999999999999999988 88999887766 8999999999999999999999999999
Q ss_pred CeEEEEEecccCC
Q 025700 82 GNLIGVFIAESRG 94 (249)
Q Consensus 82 g~~i~V~~a~~~~ 94 (249)
|+.|+|+++.++.
T Consensus 74 g~~l~v~~a~~~~ 86 (88)
T 4a8x_A 74 GQEITATAVLAPW 86 (88)
T ss_dssp TEECEEEEECCCC
T ss_pred CeEEEEEECCCCC
Confidence 9999999987654
No 44
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2.7e-19 Score=133.23 Aligned_cols=84 Identities=23% Similarity=0.367 Sum_probs=78.2
Q ss_pred CCCCeEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCC-CCcccEEEEEeCCHHHHHHHHHHhCCceec
Q 025700 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTT-NEYKGDATVTYEDPHAALAAVEWFNNKDFH 81 (249)
Q Consensus 3 ~~~~tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~t-g~~rG~aFV~F~s~~~A~~Ai~~l~g~~~~ 81 (249)
.+..+|||+|||.++|+++|+++|.+|| |.. |+|++++.| ++++|||||+|.++++|++|| .|++..|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~--------v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~ 82 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISA--------VRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLG 82 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEE--------EECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEET
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceE--------EEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeC
Confidence 4578999999999999999999999999 887 889999988 999999999999999999999 89999999
Q ss_pred CeEEEEEecccCCCC
Q 025700 82 GNLIGVFIAESRGKD 96 (249)
Q Consensus 82 g~~i~V~~a~~~~~~ 96 (249)
++.|+|++++++...
T Consensus 83 g~~l~V~~a~~~~~~ 97 (104)
T 1wi8_A 83 NKRIRVDVADQAQDK 97 (104)
T ss_dssp TEECEEEECCCCCCC
T ss_pred CcEEEEEEccCCCCC
Confidence 999999999877553
No 45
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.80 E-value=3.5e-19 Score=133.84 Aligned_cols=85 Identities=31% Similarity=0.363 Sum_probs=79.8
Q ss_pred CCCCeEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 025700 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (249)
Q Consensus 3 ~~~~tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~~~g 82 (249)
.++.+|||+|||.++|+++|+++|++||.|.. |+|+.++.+++++|||||+|.+.++|++||+.|++..|.|
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 95 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKN--------IHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMG 95 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEE--------EECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEE--------EEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 45678999999999999999999999999988 8899999999999999999999999999999999999999
Q ss_pred eEEEEEecccCCC
Q 025700 83 NLIGVFIAESRGK 95 (249)
Q Consensus 83 ~~i~V~~a~~~~~ 95 (249)
+.|+|.++.++..
T Consensus 96 ~~l~V~~a~~~~~ 108 (110)
T 1oo0_B 96 QTIQVDWCFVKGP 108 (110)
T ss_dssp EECEEEESEESSC
T ss_pred cEEEEEEcccCCC
Confidence 9999999987654
No 46
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.80 E-value=4.9e-19 Score=134.54 Aligned_cols=82 Identities=26% Similarity=0.303 Sum_probs=75.2
Q ss_pred CCCeEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCe
Q 025700 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGN 83 (249)
Q Consensus 4 ~~~tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~~~g~ 83 (249)
.+.+|||+|||+++|+++|+++|++||.|.. |+|++++ +.++|||||+|.++++|++||+.|++..|.|+
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~--------v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~ 73 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILS--------CKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDR 73 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEE--------EEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTE
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEE--------EEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 3678999999999999999999999999998 8899886 45899999999999999999999999999999
Q ss_pred EEEEEecccCCC
Q 025700 84 LIGVFIAESRGK 95 (249)
Q Consensus 84 ~i~V~~a~~~~~ 95 (249)
.|.|.++.++..
T Consensus 74 ~i~V~~a~~~~~ 85 (115)
T 4f25_A 74 KVFVGRFKSRKE 85 (115)
T ss_dssp ECEEEESSCCCC
T ss_pred EEEEEECCCccc
Confidence 999999887654
No 47
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=3.5e-19 Score=132.69 Aligned_cols=85 Identities=25% Similarity=0.380 Sum_probs=79.7
Q ss_pred CCCCeEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 025700 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (249)
Q Consensus 3 ~~~~tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~~~g 82 (249)
.+..+|||+|||.++|+++|+++|.+||.|.. |+|++++.+++++|||||+|.++++|++||+. ++..|.+
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~--------v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g 84 (105)
T 2dh8_A 14 DEIGKLFVGGLDWSTTQETLRSYFSQYGEVVD--------CVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDG 84 (105)
T ss_dssp SSSSEECCBSCCTTCCHHHHHHHHHTTSCEEE--------EEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEE--------EEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECC
Confidence 46789999999999999999999999999998 88999999999999999999999999999998 9999999
Q ss_pred eEEEEEecccCCCC
Q 025700 83 NLIGVFIAESRGKD 96 (249)
Q Consensus 83 ~~i~V~~a~~~~~~ 96 (249)
+.|.|.++.++...
T Consensus 85 ~~l~V~~a~~~~~~ 98 (105)
T 2dh8_A 85 RNIDPKPCTPRGMQ 98 (105)
T ss_dssp EEEBCCCSCCSSCC
T ss_pred EEEEEEEccCCCCC
Confidence 99999999877653
No 48
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.79 E-value=6e-20 Score=136.23 Aligned_cols=83 Identities=16% Similarity=0.151 Sum_probs=78.7
Q ss_pred CCCeEEecCCCC------CCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCC
Q 025700 4 ANGSVYVCNLPH------GTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNN 77 (249)
Q Consensus 4 ~~~tI~V~nLp~------~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g 77 (249)
.+++|||+|||. ++++++|+++|++||.|.. |+|++++.|++++|||||+|.++++|++||+.||+
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~--------v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng 76 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVN--------MEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHG 76 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEE--------EECCEETTTTEECSEEEEEESSHHHHHHHHHHHTT
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeE--------EEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCC
Confidence 468999999999 9999999999999999998 88999999999999999999999999999999999
Q ss_pred ceecC-eEEEEEecccCC
Q 025700 78 KDFHG-NLIGVFIAESRG 94 (249)
Q Consensus 78 ~~~~g-~~i~V~~a~~~~ 94 (249)
..|.+ +.|+|.++.++.
T Consensus 77 ~~~~g~r~l~V~~a~~~~ 94 (100)
T 3ns6_A 77 KRLDLKHRLFLYTMKDVE 94 (100)
T ss_dssp CBSSSSCBCEEEESHHHH
T ss_pred cccCCCeEEEEEECchhh
Confidence 99999 999999998653
No 49
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.3e-18 Score=129.17 Aligned_cols=84 Identities=21% Similarity=0.272 Sum_probs=76.9
Q ss_pred CCCCeEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 025700 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (249)
Q Consensus 3 ~~~~tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~~~g 82 (249)
.+..+|||+|||.++|+++|+++|.+||.|.. |+|++++.+ +++||||+|.++++|++||+.|++..|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g 82 (103)
T 2cqi_A 13 GQPRTLYVGNLSRDVTEVLILQLFSQIGPCKS--------CKMITEHTS--NDPYCFVEFYEHRDAAAALAAMNGRKILG 82 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHHHHSCEEE--------EEEECCCCS--SCCEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHhcCCEeE--------EEEEecCCC--CCCEEEEEECCHHHHHHHHHHhCCCCcCC
Confidence 45789999999999999999999999999998 888888654 68999999999999999999999999999
Q ss_pred eEEEEEecccCCCC
Q 025700 83 NLIGVFIAESRGKD 96 (249)
Q Consensus 83 ~~i~V~~a~~~~~~ 96 (249)
+.|+|++++++...
T Consensus 83 ~~l~V~~a~~~~~~ 96 (103)
T 2cqi_A 83 KEVKVNWATTPSSQ 96 (103)
T ss_dssp EEEEEEECCCTTCC
T ss_pred CeEEEEECCCCccc
Confidence 99999999876554
No 50
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.79 E-value=3.8e-19 Score=133.79 Aligned_cols=84 Identities=27% Similarity=0.352 Sum_probs=79.5
Q ss_pred CCCCeEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 025700 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (249)
Q Consensus 3 ~~~~tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~~~g 82 (249)
+++.+|||+|||.++|+++|+++|++||.|.. |+|++++.+++++|||||+|.+.++|++||+.|++..|.|
T Consensus 24 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~--------v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g 95 (108)
T 2jrs_A 24 AGPMRLYVGSLHFNITEDMLRGIFEPFGRIES--------IQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAG 95 (108)
T ss_dssp SSCEEEEEECCCSSCCHHHHHHHHTTTSCEEE--------EEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEE--------EEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 45789999999999999999999999999988 8899999999999999999999999999999999999999
Q ss_pred eEEEEEecccCC
Q 025700 83 NLIGVFIAESRG 94 (249)
Q Consensus 83 ~~i~V~~a~~~~ 94 (249)
+.|+|++++++.
T Consensus 96 ~~l~V~~a~~k~ 107 (108)
T 2jrs_A 96 RPMKVGHVTERT 107 (108)
T ss_dssp SCCEEECSCSSC
T ss_pred EEEEEEEcccCC
Confidence 999999998764
No 51
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.79 E-value=2.2e-19 Score=129.54 Aligned_cols=81 Identities=23% Similarity=0.339 Sum_probs=76.9
Q ss_pred CCCeEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCe
Q 025700 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGN 83 (249)
Q Consensus 4 ~~~tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~~~g~ 83 (249)
++++|||+|||.++|+++|+++|++||.|.. |+++.++.++++++||||+|.+.++|++|| .|++..|.++
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~ 75 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNR--------VTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGR 75 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEE--------EEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTE
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEE--------EEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCc
Confidence 4689999999999999999999999999998 889999999999999999999999999999 8999999999
Q ss_pred EEEEEecccC
Q 025700 84 LIGVFIAESR 93 (249)
Q Consensus 84 ~i~V~~a~~~ 93 (249)
.|+|+++++.
T Consensus 76 ~l~V~~a~~~ 85 (89)
T 3ucg_A 76 QIKVIPKRTN 85 (89)
T ss_dssp ECEEEETTTT
T ss_pred EEEEEEccCC
Confidence 9999998764
No 52
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.5e-18 Score=128.77 Aligned_cols=85 Identities=25% Similarity=0.252 Sum_probs=77.9
Q ss_pred CCCCeEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 025700 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (249)
Q Consensus 3 ~~~~tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~~~g 82 (249)
.+..+|||+|||.++|+++|+++|.+||.|.. |+|+.++. .+++||||+|.+.++|++||+.|++..|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~--------v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 82 (103)
T 2cq3_A 13 STPKRLHVSNIPFRFRDPDLRQMFGQFGKILD--------VEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEG 82 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHGGGTSCEEE--------EEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEE--------EEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 46789999999999999999999999999988 88888864 389999999999999999999999999999
Q ss_pred eEEEEEecccCCCCC
Q 025700 83 NLIGVFIAESRGKDD 97 (249)
Q Consensus 83 ~~i~V~~a~~~~~~~ 97 (249)
+.|+|.++.++....
T Consensus 83 ~~l~v~~a~~~~~~~ 97 (103)
T 2cq3_A 83 RKIEVNNATARVMTN 97 (103)
T ss_dssp EECEEEECCSSCCCC
T ss_pred EEEEEEEcccCCCCC
Confidence 999999999876544
No 53
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=3.6e-19 Score=130.90 Aligned_cols=82 Identities=17% Similarity=0.229 Sum_probs=76.3
Q ss_pred CCCeEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCe
Q 025700 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGN 83 (249)
Q Consensus 4 ~~~tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~~~g~ 83 (249)
...+|||+|||.++|+++|+++|.+||.|.. +.++.++.+++++|||||+|.++++|++||+.|++..|.++
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~--------~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~ 85 (98)
T 2cqp_A 14 GPTIIKVQNMPFTVSIDEILDFFYGYQVIPG--------SVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSR 85 (98)
T ss_dssp SSEEEEEESCCTTCCHHHHHHHTTTSCCCTT--------TCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCccc--------eEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCe
Confidence 4578999999999999999999999999987 55888888999999999999999999999999999999999
Q ss_pred EEEEEecccC
Q 025700 84 LIGVFIAESR 93 (249)
Q Consensus 84 ~i~V~~a~~~ 93 (249)
.|+|+++..+
T Consensus 86 ~l~V~~a~~~ 95 (98)
T 2cqp_A 86 KVKLVLGSGP 95 (98)
T ss_dssp ECEEEESSCS
T ss_pred EEEEEEcCCC
Confidence 9999998754
No 54
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.79 E-value=2.9e-19 Score=130.63 Aligned_cols=82 Identities=18% Similarity=0.192 Sum_probs=74.8
Q ss_pred CCCCeEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 025700 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (249)
Q Consensus 3 ~~~~tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~~~g 82 (249)
+++.+|||+|||.++|+++|+++|.+||.|.. +.++.++.++++++||||+|.++++|++||+.|++..|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~--------~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g 84 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPG--------SVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGS 84 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTT--------CCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccc--------eEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECC
Confidence 34689999999999999999999999999987 5688888899999999999999999999999999999999
Q ss_pred eEEEEEeccc
Q 025700 83 NLIGVFIAES 92 (249)
Q Consensus 83 ~~i~V~~a~~ 92 (249)
+.|+|+++.+
T Consensus 85 r~l~v~~a~s 94 (95)
T 2ek1_A 85 RKVKLSGPSS 94 (95)
T ss_dssp EECEEECCC-
T ss_pred cEEEEEeccC
Confidence 9999998753
No 55
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.79 E-value=9.6e-19 Score=130.66 Aligned_cols=80 Identities=26% Similarity=0.427 Sum_probs=76.0
Q ss_pred CCCCeEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 025700 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (249)
Q Consensus 3 ~~~~tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~~~g 82 (249)
.++.+|||+|||.++|+++|+++|.+||.|.. |+|++++ ++++++||||+|.++++|++||+.|++..|.+
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 97 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKK--------AAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDG 97 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEE--------EEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEE--------EEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 45789999999999999999999999999988 8899998 89999999999999999999999999999999
Q ss_pred eEEEEEecc
Q 025700 83 NLIGVFIAE 91 (249)
Q Consensus 83 ~~i~V~~a~ 91 (249)
+.|+|+++.
T Consensus 98 ~~l~V~~a~ 106 (107)
T 3ulh_A 98 RPMNIQLVT 106 (107)
T ss_dssp EECEEEEEC
T ss_pred cEEEEEEeC
Confidence 999999975
No 56
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=2e-18 Score=128.10 Aligned_cols=84 Identities=23% Similarity=0.313 Sum_probs=77.8
Q ss_pred CCCCeEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 025700 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (249)
Q Consensus 3 ~~~~tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~~~g 82 (249)
.+..+|||+|||.++|+++|+++|.+||.|.. |+|++++.|++++|||||+|.+.++|++||+ +++.|.|
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g 82 (103)
T 2cqg_A 13 QKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLM--------VQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDG 82 (103)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHHGGGSCEEE--------EEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETT
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEE--------EEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCC
Confidence 45789999999999999999999999999998 8899999999999999999999999999998 4778999
Q ss_pred eEEEEEecccCCCC
Q 025700 83 NLIGVFIAESRGKD 96 (249)
Q Consensus 83 ~~i~V~~a~~~~~~ 96 (249)
+.|.|.++.++...
T Consensus 83 ~~l~v~~a~~~~~~ 96 (103)
T 2cqg_A 83 RWCDCKLPNSKQSQ 96 (103)
T ss_dssp EEEEEECCCTTCCC
T ss_pred eEEEEEecCCCCcC
Confidence 99999999887654
No 57
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.78 E-value=7.4e-19 Score=140.87 Aligned_cols=82 Identities=20% Similarity=0.268 Sum_probs=76.7
Q ss_pred CCCeEEecCCCCCCCHHHHHHHHHhcC--CeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceec
Q 025700 4 ANGSVYVCNLPHGTDEDMLAEYFGTIG--LLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFH 81 (249)
Q Consensus 4 ~~~tI~V~nLp~~~te~dL~~~F~~~G--~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~~~ 81 (249)
+..+|||+|||+++|+++|+++|.+|| .|.. |+|++|+.|++++|||||+|.+.++|++||+.|++..|.
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~--------v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~ 125 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVE--------LKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLN 125 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEE--------EEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEET
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEE--------EEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 457999999999999999999999999 7877 889999999999999999999999999999999999999
Q ss_pred CeEEEEEecccC
Q 025700 82 GNLIGVFIAESR 93 (249)
Q Consensus 82 g~~i~V~~a~~~ 93 (249)
|+.|.|.++.++
T Consensus 126 Gr~l~V~~a~~~ 137 (156)
T 3n9u_C 126 GEKVDVRPATRQ 137 (156)
T ss_dssp TEECEEEECCHH
T ss_pred CeEeEEEEcCCC
Confidence 999999998764
No 58
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.78 E-value=1.6e-18 Score=124.71 Aligned_cols=79 Identities=19% Similarity=0.309 Sum_probs=74.1
Q ss_pred CCCCeEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 025700 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (249)
Q Consensus 3 ~~~~tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~~~g 82 (249)
.+..+|||+|||+++|+++|+++|++||.|.. |+|++++.|++++|||||+|.+.++|++||+ +++..|.|
T Consensus 9 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g 79 (87)
T 3s7r_A 9 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVD--------CTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDG 79 (87)
T ss_dssp SCTTEEEEECCCTTCCHHHHHHHHTTTSCEEE--------EEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEE--------EEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECC
Confidence 46789999999999999999999999999998 8899999999999999999999999999997 57888999
Q ss_pred eEEEEEec
Q 025700 83 NLIGVFIA 90 (249)
Q Consensus 83 ~~i~V~~a 90 (249)
+.|.|++|
T Consensus 80 ~~i~v~~A 87 (87)
T 3s7r_A 80 RVIDPKKA 87 (87)
T ss_dssp EEEEEEEC
T ss_pred EEEEEEeC
Confidence 99999875
No 59
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.4e-18 Score=127.72 Aligned_cols=82 Identities=23% Similarity=0.181 Sum_probs=75.8
Q ss_pred CCCCeEEecCCCCCCCHHHHH----HHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCc
Q 025700 3 MANGSVYVCNLPHGTDEDMLA----EYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNK 78 (249)
Q Consensus 3 ~~~~tI~V~nLp~~~te~dL~----~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~ 78 (249)
.+..+|||+|||.++++++|+ ++|++||.|.. |+|+.++.+ ++||||+|.++++|++||+.||+.
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~--------v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~ 75 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKS--------VELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRY 75 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEE--------EEECSCCST---TCCEEEEESSHHHHHHHHHHHTTE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEE--------EEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCC
Confidence 356799999999999999999 99999999998 889998876 889999999999999999999999
Q ss_pred eecCeEEEEEecccCCC
Q 025700 79 DFHGNLIGVFIAESRGK 95 (249)
Q Consensus 79 ~~~g~~i~V~~a~~~~~ 95 (249)
.|.|+.|+|++++++..
T Consensus 76 ~~~gr~l~V~~a~~~~~ 92 (96)
T 2dgx_A 76 KIGSKKILVSLATGASG 92 (96)
T ss_dssp EETTEEEEEEECCCSSC
T ss_pred EECCeEEEEEEcCCCCC
Confidence 99999999999987654
No 60
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.78 E-value=1e-18 Score=127.66 Aligned_cols=81 Identities=28% Similarity=0.350 Sum_probs=75.8
Q ss_pred CCCCeEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 025700 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (249)
Q Consensus 3 ~~~~tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~~~g 82 (249)
.++.+|||+|||.++++++|+++|++||.|.. |+|+.++. +++++||||+|.++++|++||+.|++..|.+
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~--------v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 84 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQAGPLTK--------VTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYG 84 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGGGSCEEE--------EEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEE--------EEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 45689999999999999999999999999998 88999886 8999999999999999999999999999999
Q ss_pred eEEEEEeccc
Q 025700 83 NLIGVFIAES 92 (249)
Q Consensus 83 ~~i~V~~a~~ 92 (249)
+.|+|++++.
T Consensus 85 ~~l~V~~a~~ 94 (95)
T 2ywk_A 85 RPINVSGPSS 94 (95)
T ss_dssp EECEEECCCC
T ss_pred CEEEEEEcCC
Confidence 9999999763
No 61
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.78 E-value=3.9e-19 Score=138.02 Aligned_cols=84 Identities=26% Similarity=0.245 Sum_probs=79.6
Q ss_pred CCCCeEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 025700 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (249)
Q Consensus 3 ~~~~tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~~~g 82 (249)
.++.+|||+|||.++|+++|+++|.+||.|.. |+|++++.|++++|||||+|.+.++|++||+.|++..|.|
T Consensus 44 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~--------v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g 115 (129)
T 2kxn_B 44 DPNCCLGVFGLSLYTTERDLREVFSKYGPIAD--------VSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDG 115 (129)
T ss_dssp CCSSCBCEETCTTSCCHHHHHHHHTTTSCEEE--------EEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEE--------EEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 46789999999999999999999999999988 8899999999999999999999999999999999999999
Q ss_pred eEEEEEecccCC
Q 025700 83 NLIGVFIAESRG 94 (249)
Q Consensus 83 ~~i~V~~a~~~~ 94 (249)
+.|+|+++.++.
T Consensus 116 ~~l~V~~a~~~~ 127 (129)
T 2kxn_B 116 RRIRVDFSITKR 127 (129)
T ss_dssp SCCEESCCSSSS
T ss_pred EEEEEEEecCCC
Confidence 999999998764
No 62
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.78 E-value=1.4e-18 Score=126.25 Aligned_cols=84 Identities=24% Similarity=0.313 Sum_probs=77.1
Q ss_pred CCCCCeEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceec
Q 025700 2 TMANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFH 81 (249)
Q Consensus 2 ~~~~~tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~~~ 81 (249)
..++.+|||+|||.++|+++|+++|.+||.|.. |+|+++ ++++++||||+|.+.++|++||+.|++..|.
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~--------~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~ 74 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLY--------ADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLS 74 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEE--------EEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBT
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEE--------EEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 356889999999999999999999999999998 777763 7899999999999999999999999999999
Q ss_pred CeEEEEEecccCCC
Q 025700 82 GNLIGVFIAESRGK 95 (249)
Q Consensus 82 g~~i~V~~a~~~~~ 95 (249)
++.|+|+++++...
T Consensus 75 g~~l~v~~a~~~~~ 88 (92)
T 2dgv_A 75 GREIDVRIDRNASG 88 (92)
T ss_dssp TBCCCCEECSCCSS
T ss_pred CcEEEEEEcCCCCC
Confidence 99999999987654
No 63
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.78 E-value=3.4e-18 Score=127.08 Aligned_cols=79 Identities=25% Similarity=0.403 Sum_probs=71.5
Q ss_pred CCCCeEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 025700 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (249)
Q Consensus 3 ~~~~tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~~~g 82 (249)
.++++|||+|||.++|+++|+++|.+||.|.. |+|+ ++||||+|.++++|++||+.|++..|.+
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~--------v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g 72 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLER--------VKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEG 72 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEE--------EEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEE--------EEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCC
Confidence 45789999999999999999999999999987 6665 4599999999999999999999999999
Q ss_pred eEEEEEecccCCCCC
Q 025700 83 NLIGVFIAESRGKDD 97 (249)
Q Consensus 83 ~~i~V~~a~~~~~~~ 97 (249)
+.|+|++++++....
T Consensus 73 ~~l~v~~a~~~~~~~ 87 (103)
T 2dgu_A 73 ENIEIVFAKPPDQKR 87 (103)
T ss_dssp EEEEEEECCCCCCCC
T ss_pred CEEEEEEcCCCcccc
Confidence 999999998876544
No 64
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.78 E-value=1.2e-18 Score=131.18 Aligned_cols=85 Identities=22% Similarity=0.313 Sum_probs=76.4
Q ss_pred CCCCCeEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceec
Q 025700 2 TMANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFH 81 (249)
Q Consensus 2 ~~~~~tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~~~ 81 (249)
..+..+|||+|||.++|+++|+++|++||.|.. |+|++++.|++++|||||+|.+.++|++||+.++ ..|.
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~--------v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~-~~l~ 92 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKE--------CLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELD 92 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEEE--------EEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSC-EEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEE--------EEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCC-CcCC
Confidence 346789999999999999999999999999998 8899999999999999999999999999999764 8999
Q ss_pred CeEEEEEecccCCC
Q 025700 82 GNLIGVFIAESRGK 95 (249)
Q Consensus 82 g~~i~V~~a~~~~~ 95 (249)
|+.|.|.++.++..
T Consensus 93 g~~l~V~~a~~~~~ 106 (109)
T 2rs2_A 93 SKTIDPKVAFPRRA 106 (109)
T ss_dssp TEEEEEEECCCCCC
T ss_pred CEEEEEEEccCCCC
Confidence 99999999987654
No 65
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=2.3e-18 Score=125.00 Aligned_cols=82 Identities=17% Similarity=0.255 Sum_probs=76.0
Q ss_pred CCCCeEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 025700 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (249)
Q Consensus 3 ~~~~tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~~~g 82 (249)
.+..+|||+|||.++|+++|+++|.+| .|.. |+|+++ .+++++|||||+|.++++|++||+ |++..|.+
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~--------v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~g 76 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVA--------IRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGG 76 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSE--------EEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETT
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceE--------EEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCC
Confidence 456899999999999999999999999 7877 889999 789999999999999999999999 99999999
Q ss_pred eEEEEEecccCCC
Q 025700 83 NLIGVFIAESRGK 95 (249)
Q Consensus 83 ~~i~V~~a~~~~~ 95 (249)
+.|+|.++.++..
T Consensus 77 r~i~v~~a~~~~~ 89 (91)
T 2dgw_A 77 RYIEVFREKSGPS 89 (91)
T ss_dssp EEEEEEEESSCCC
T ss_pred cEEEEEECCcCCC
Confidence 9999999987653
No 66
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.5e-18 Score=131.72 Aligned_cols=83 Identities=20% Similarity=0.288 Sum_probs=78.0
Q ss_pred CCeEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeE
Q 025700 5 NGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGNL 84 (249)
Q Consensus 5 ~~tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~~~g~~ 84 (249)
..+|||+|||.++|+++|+++|.+||.|.. |+|+.++.|++++|||||+|.++++|++||+. ++..|.++.
T Consensus 27 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~--------v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~ 97 (116)
T 1x4b_A 27 FRKLFIGGLSFETTEESLRNYYEQWGKLTD--------CVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRV 97 (116)
T ss_dssp HTEEEEECCTTCCCHHHHHHHHTSSCCCSE--------EEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEE--------EEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEE
Confidence 479999999999999999999999999988 88999999999999999999999999999997 999999999
Q ss_pred EEEEecccCCCC
Q 025700 85 IGVFIAESRGKD 96 (249)
Q Consensus 85 i~V~~a~~~~~~ 96 (249)
|+|.++.++...
T Consensus 98 l~V~~a~~~~~~ 109 (116)
T 1x4b_A 98 VEPKRAVAREES 109 (116)
T ss_dssp EEEECCSSCCCC
T ss_pred EEEEECCCCccC
Confidence 999999887653
No 67
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.78 E-value=5.3e-19 Score=134.45 Aligned_cols=81 Identities=20% Similarity=0.270 Sum_probs=76.2
Q ss_pred CCCCeEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 025700 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (249)
Q Consensus 3 ~~~~tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~~~g 82 (249)
.+..+|||+|||.++|+++|+++|.+||.|.. |+|++++.+++++|||||+|.+.++|++||+.||+..|.+
T Consensus 38 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~--------~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 109 (118)
T 2khc_A 38 PEGCNLFIYHLPQEFTDTDLASTFLPFGNVIS--------AKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGT 109 (118)
T ss_dssp CCSEEEEEECSCTTCCHHHHHHHTTTSCEEEE--------EEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEE--------EEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 34689999999999999999999999999998 8899999999999999999999999999999999999999
Q ss_pred eEEEEEecc
Q 025700 83 NLIGVFIAE 91 (249)
Q Consensus 83 ~~i~V~~a~ 91 (249)
+.|+|++++
T Consensus 110 ~~l~V~~ak 118 (118)
T 2khc_A 110 KRLKVQLKK 118 (118)
T ss_dssp EECCEEEC-
T ss_pred EEEEEEecC
Confidence 999999874
No 68
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.77 E-value=4e-19 Score=138.00 Aligned_cols=87 Identities=21% Similarity=0.253 Sum_probs=79.7
Q ss_pred CCCCeEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCc----
Q 025700 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNK---- 78 (249)
Q Consensus 3 ~~~~tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~---- 78 (249)
.++++|||+|||+++|+++|+++|.+||.|.... |+|++|+.|++++|||||+|.++ +|++||+.|++.
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~------v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~ 93 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSN------VRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPL 93 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTT------EECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceee------EEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCc
Confidence 3578999999999999999999999999996543 78999999999999999999999 999999999999
Q ss_pred eecCeEEEEEecccCCCC
Q 025700 79 DFHGNLIGVFIAESRGKD 96 (249)
Q Consensus 79 ~~~g~~i~V~~a~~~~~~ 96 (249)
.|.|+.|+|++++++.+.
T Consensus 94 ~~~gr~l~V~~a~~~~~~ 111 (131)
T 2m2b_A 94 TIDGKTINVEFAKGSKRD 111 (131)
T ss_dssp CGGGCCCCCEECCCSCCC
T ss_pred cCCCEEEEEEECCCCCCC
Confidence 999999999999876543
No 69
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=9.5e-19 Score=131.13 Aligned_cols=87 Identities=21% Similarity=0.228 Sum_probs=79.2
Q ss_pred CCCCCeEEecCCCCCCCHHHHHHHHHhcCC-eeecCCCCCCeEEEE-ecCCCCCcccEEEEEeCCHHHHHHHHHHhC--C
Q 025700 2 TMANGSVYVCNLPHGTDEDMLAEYFGTIGL-LKKDKRTGRPKVWLY-RDKTTNEYKGDATVTYEDPHAALAAVEWFN--N 77 (249)
Q Consensus 2 ~~~~~tI~V~nLp~~~te~dL~~~F~~~G~-i~~~~~~g~p~V~i~-~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~--g 77 (249)
+.++++|||+|||.++|+++|+++|.+||. |.. |.|+ .++.|++++|||||+|.++++|++||+.|+ +
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~--------v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~ 76 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLD--------VIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGR 76 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEE--------EECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCC
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceE--------EEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCC
Confidence 356789999999999999999999999998 887 7787 788899999999999999999999999996 5
Q ss_pred ceecCeEEEEEecccCCCC
Q 025700 78 KDFHGNLIGVFIAESRGKD 96 (249)
Q Consensus 78 ~~~~g~~i~V~~a~~~~~~ 96 (249)
..|.++.|+|.+++++...
T Consensus 77 ~~~~g~~l~V~~a~~~~~~ 95 (109)
T 2dis_A 77 IQLWGHQIAVDWAEPEIDV 95 (109)
T ss_dssp SCBTTBCCEEEESCSSCST
T ss_pred ceecCCeEEEEEcCCCCCc
Confidence 8999999999999887653
No 70
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.77 E-value=2e-18 Score=139.23 Aligned_cols=86 Identities=30% Similarity=0.361 Sum_probs=79.1
Q ss_pred CCCCeEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 025700 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (249)
Q Consensus 3 ~~~~tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~~~g 82 (249)
.++.+|||+|||..+|+++|+++|.+||.|.. |.|+.++.|++++|||||+|.+.++|++||+.|++..|.+
T Consensus 70 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~--------v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 141 (165)
T 1rk8_A 70 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKN--------IHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMG 141 (165)
T ss_dssp C-CEEEEEESCCTTCCHHHHHHHHGGGSCEEE--------EEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEE--------EEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 34568999999999999999999999999998 8899999999999999999999999999999999999999
Q ss_pred eEEEEEecccCCCC
Q 025700 83 NLIGVFIAESRGKD 96 (249)
Q Consensus 83 ~~i~V~~a~~~~~~ 96 (249)
+.|.|.++.++...
T Consensus 142 ~~l~V~~a~~~~~~ 155 (165)
T 1rk8_A 142 QTIQVDWCFVKGPK 155 (165)
T ss_dssp EECEEEESEECC--
T ss_pred EEEEEEEecCCCCC
Confidence 99999999877653
No 71
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.64 E-value=2e-20 Score=142.12 Aligned_cols=94 Identities=39% Similarity=0.757 Sum_probs=86.9
Q ss_pred CCCCCeEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceec
Q 025700 2 TMANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFH 81 (249)
Q Consensus 2 ~~~~~tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~~~ 81 (249)
..++.+|||+|||.++|+++|+++|++||.|..+..++.|.|+|+.++.|++++|||||+|.+.++|++||+.|++..|.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 46789999999999999999999999999998866667777889999999999999999999999999999999999999
Q ss_pred CeEEEEEecccCCC
Q 025700 82 GNLIGVFIAESRGK 95 (249)
Q Consensus 82 g~~i~V~~a~~~~~ 95 (249)
++.|+|++++++..
T Consensus 84 g~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 84 GNPIKVSFATRRAD 97 (116)
Confidence 99999999987654
No 72
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=4.2e-18 Score=127.73 Aligned_cols=82 Identities=24% Similarity=0.259 Sum_probs=73.8
Q ss_pred CCCCeEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 025700 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (249)
Q Consensus 3 ~~~~tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~~~g 82 (249)
.++.+|||+|||.++|+++|+++|.+||.|.. |+|..+ +.+++||||+|.++++|++||+.|++..|.+
T Consensus 20 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~--------~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 88 (109)
T 1x4a_A 20 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRD--------IDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDG 88 (109)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEE--------EEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEE--------EEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 45689999999999999999999999999988 666543 4589999999999999999999999999999
Q ss_pred eEEEEEecccCCC
Q 025700 83 NLIGVFIAESRGK 95 (249)
Q Consensus 83 ~~i~V~~a~~~~~ 95 (249)
+.|+|++++++..
T Consensus 89 ~~l~V~~a~~~~~ 101 (109)
T 1x4a_A 89 YRLRVEFPRSGRG 101 (109)
T ss_dssp EECEEECCCCCCC
T ss_pred eEEEEEEcccCCC
Confidence 9999999987654
No 73
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.2e-18 Score=129.29 Aligned_cols=84 Identities=30% Similarity=0.437 Sum_probs=79.3
Q ss_pred CCCeEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCe
Q 025700 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGN 83 (249)
Q Consensus 4 ~~~tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~~~g~ 83 (249)
++++|||+|||.++|+++|+++|++||.|.. |+|+.++.+++++|||||+|.+.++|++||+.|++..|.|+
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~--------~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 78 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVS--------FRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGR 78 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSE--------EEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSS
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeE--------EEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCc
Confidence 4579999999999999999999999999988 88999999999999999999999999999999999999999
Q ss_pred EEEEEecccCCC
Q 025700 84 LIGVFIAESRGK 95 (249)
Q Consensus 84 ~i~V~~a~~~~~ 95 (249)
.|+|+++.++..
T Consensus 79 ~l~v~~a~~~~~ 90 (104)
T 1p1t_A 79 ALRVDNAASEKN 90 (104)
T ss_dssp CBEEEETTCTTH
T ss_pred EEEEEeCCCccc
Confidence 999999987654
No 74
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.7e-18 Score=129.63 Aligned_cols=82 Identities=13% Similarity=0.214 Sum_probs=73.1
Q ss_pred CCCCCeEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhC--Cce
Q 025700 2 TMANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFN--NKD 79 (249)
Q Consensus 2 ~~~~~tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~--g~~ 79 (249)
..++.+|||+|||+++||++|+++|++||.|.. |+|+++ ||||||+|+++++|++||+.|+ +..
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~--------v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~ 78 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTN--------LLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPV 78 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEE--------EEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEE--------EEEEcC------CCEEEEEECCHHHHHHHHHHhccCCce
Confidence 356889999999999999999999999999998 778764 6899999999999999999886 478
Q ss_pred ecCeEEEEEecccCCCCC
Q 025700 80 FHGNLIGVFIAESRGKDD 97 (249)
Q Consensus 80 ~~g~~i~V~~a~~~~~~~ 97 (249)
|.|++|.|.+++++....
T Consensus 79 l~Gr~l~V~~A~~~~~~~ 96 (105)
T 1sjq_A 79 LRGQPIYIQFSNHKELKT 96 (105)
T ss_dssp ETTEECCBCCCSSSSCCC
T ss_pred ECCEEEEEEEcCCCCCCc
Confidence 999999999998876544
No 75
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=3.2e-19 Score=135.28 Aligned_cols=82 Identities=16% Similarity=0.208 Sum_probs=76.3
Q ss_pred CCCCeEEecCCCCCCCHHHHHHHHHhcCCe-eecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceec
Q 025700 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLL-KKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFH 81 (249)
Q Consensus 3 ~~~~tI~V~nLp~~~te~dL~~~F~~~G~i-~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~~~ 81 (249)
.+..+|||+|||.++|+++|+++|.+||.| .. |+|++++ +++++|||||+|.++++|++||+. ++..|.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~--------v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~ 82 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENA--------VHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLN 82 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTT--------EEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEET
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCe--------EEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccC
Confidence 467899999999999999999999999998 55 8899998 899999999999999999999996 999999
Q ss_pred CeEEEEEecccCC
Q 025700 82 GNLIGVFIAESRG 94 (249)
Q Consensus 82 g~~i~V~~a~~~~ 94 (249)
++.|.|.++.++.
T Consensus 83 gr~i~v~~a~~~~ 95 (114)
T 2cpy_A 83 GREAFVHVVTLED 95 (114)
T ss_dssp TEEEEEEEECHHH
T ss_pred CeEEEEEECCHHH
Confidence 9999999998765
No 76
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=2.6e-18 Score=127.23 Aligned_cols=82 Identities=24% Similarity=0.341 Sum_probs=75.2
Q ss_pred CCCCeEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 025700 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (249)
Q Consensus 3 ~~~~tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~~~g 82 (249)
.++.+|||+|||.++|+++|+++|.+|. . |++++++.++++++||||+|.++++|++||+.|++..|.+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~--------~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 81 (102)
T 2fc8_A 13 QPSKTLFVKGLSEDTTEETLKESFDGSV---R--------ARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDG 81 (102)
T ss_dssp CCCSSEEEECCCTTCCHHHHHHTSTTCS---E--------EEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEeCCCCccCHHHHHHHhcCCe---E--------EEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECC
Confidence 4678999999999999999999999773 2 6688898899999999999999999999999999999999
Q ss_pred eEEEEEecccCCC
Q 025700 83 NLIGVFIAESRGK 95 (249)
Q Consensus 83 ~~i~V~~a~~~~~ 95 (249)
+.|+|++++++..
T Consensus 82 ~~l~V~~a~~~~~ 94 (102)
T 2fc8_A 82 NKVTLDWAKPKGE 94 (102)
T ss_dssp EECEEEECCCCCS
T ss_pred eEEEEEEecCCCC
Confidence 9999999987654
No 77
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=1.5e-18 Score=130.95 Aligned_cols=85 Identities=24% Similarity=0.337 Sum_probs=77.5
Q ss_pred CCCCeEEecCCCCCCCHHHHH---HHHHhcCCeeecCCCCCCeEEEEecCCCC---CcccEEEEEeCCHHHHHHHHHHhC
Q 025700 3 MANGSVYVCNLPHGTDEDMLA---EYFGTIGLLKKDKRTGRPKVWLYRDKTTN---EYKGDATVTYEDPHAALAAVEWFN 76 (249)
Q Consensus 3 ~~~~tI~V~nLp~~~te~dL~---~~F~~~G~i~~~~~~g~p~V~i~~d~~tg---~~rG~aFV~F~s~~~A~~Ai~~l~ 76 (249)
.+..+|||+|||+++++++|+ ++|.+||.|.. |+|++++.++ +++|||||+|.++++|++||+.||
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~--------v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~ln 84 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHK--------VVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVN 84 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEE--------EEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHT
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEE--------EEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhC
Confidence 357899999999999999999 99999999998 7888888754 456999999999999999999999
Q ss_pred CceecCeEEEEEecccCCC
Q 025700 77 NKDFHGNLIGVFIAESRGK 95 (249)
Q Consensus 77 g~~~~g~~i~V~~a~~~~~ 95 (249)
+..|.|+.|+|+++.++..
T Consensus 85 g~~~~gr~l~V~~a~~k~~ 103 (111)
T 2cpi_A 85 NVVVDGRTLKASLGTTKYC 103 (111)
T ss_dssp TEEETTEEEEEESCCCCSC
T ss_pred CCEECCEEEEEEecccccc
Confidence 9999999999999988763
No 78
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.2e-18 Score=129.93 Aligned_cols=81 Identities=17% Similarity=0.356 Sum_probs=73.7
Q ss_pred CCCCeEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 025700 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (249)
Q Consensus 3 ~~~~tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~~~g 82 (249)
.+..+|||+|||+++|++||+++|.+||.+ . |+|++++ +++++|||||+|.++++|++||+ +++..|.+
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~--------v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~g 81 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLNPM-R--------VHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQH 81 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCCCS-E--------EEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCce-E--------EEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECC
Confidence 456799999999999999999999999955 5 8899998 89999999999999999999996 79999999
Q ss_pred eEEEEEecccCC
Q 025700 83 NLIGVFIAESRG 94 (249)
Q Consensus 83 ~~i~V~~a~~~~ 94 (249)
+.|+|.++.+..
T Consensus 82 r~i~V~~~~~~~ 93 (102)
T 1wez_A 82 RYVELFLNSTAG 93 (102)
T ss_dssp SCCEEEEECCCC
T ss_pred cEEEEEECCCCC
Confidence 999999887654
No 79
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=2.9e-18 Score=126.81 Aligned_cols=82 Identities=21% Similarity=0.330 Sum_probs=73.9
Q ss_pred CCCCCeEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceec
Q 025700 2 TMANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFH 81 (249)
Q Consensus 2 ~~~~~tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~~~ 81 (249)
..++++|||+|||.++|+++|+++|.+||.|. ++.+ .++++++||||+|.++++|++||+.|++..|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~-----------~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 79 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFIK-----------VPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIE 79 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEEE-----------CCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEEE-----------EEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 35678999999999999999999999999763 5555 57899999999999999999999999999999
Q ss_pred CeEEEEEecccCCC
Q 025700 82 GNLIGVFIAESRGK 95 (249)
Q Consensus 82 g~~i~V~~a~~~~~ 95 (249)
++.|+|++++++..
T Consensus 80 g~~l~v~~a~~~~~ 93 (101)
T 2fc9_A 80 GRAIRLELQGPRGS 93 (101)
T ss_dssp TEEEEEEECSSCCC
T ss_pred CeEEEEEEcCCCCC
Confidence 99999999987654
No 80
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.4e-19 Score=128.51 Aligned_cols=81 Identities=23% Similarity=0.293 Sum_probs=75.3
Q ss_pred CCCCCeEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceec
Q 025700 2 TMANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFH 81 (249)
Q Consensus 2 ~~~~~tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~~~ 81 (249)
.+++.+|||+|||.++|+++|+++|++||.|.. |+|+.++.+++++|||||+|.++++|++||+.||+..|.
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~--------~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 73 (85)
T 1x4e_A 2 SSGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVS--------TKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQ 73 (85)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHTTSTTTSCEEE--------EEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEE--------EEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEe
Confidence 467899999999999999999999999999998 889999999999999999999999999999999999999
Q ss_pred CeEEEEEec
Q 025700 82 GNLIGVFIA 90 (249)
Q Consensus 82 g~~i~V~~a 90 (249)
++.|+|.++
T Consensus 74 g~~~~~~~~ 82 (85)
T 1x4e_A 74 AQMAKQSGP 82 (85)
T ss_dssp EESCCSSCC
T ss_pred eEEEeecCC
Confidence 988876653
No 81
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.76 E-value=3e-18 Score=136.69 Aligned_cols=84 Identities=27% Similarity=0.312 Sum_probs=79.4
Q ss_pred CCCeEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCe
Q 025700 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGN 83 (249)
Q Consensus 4 ~~~tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~~~g~ 83 (249)
+..+|||+|||.++|+++|+++|++||.|.. |+|++++.|++++|||||+|.+.++|++||+.|++..|.|+
T Consensus 69 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~--------~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 140 (158)
T 2kn4_A 69 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGD--------VYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGR 140 (158)
T ss_dssp BCCEEEEESCCTTCCHHHHHHHHHHHSCEEE--------EECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEE--------EEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCe
Confidence 4689999999999999999999999999988 88999999999999999999999999999999999999999
Q ss_pred EEEEEecccCCC
Q 025700 84 LIGVFIAESRGK 95 (249)
Q Consensus 84 ~i~V~~a~~~~~ 95 (249)
.|.|.+++++..
T Consensus 141 ~l~v~~a~~~~~ 152 (158)
T 2kn4_A 141 ELRVQMARYGRP 152 (158)
T ss_dssp EEEEEEECCSSC
T ss_pred EEEEEECCCCCC
Confidence 999999987644
No 82
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.76 E-value=4.1e-18 Score=130.61 Aligned_cols=82 Identities=26% Similarity=0.358 Sum_probs=77.0
Q ss_pred CCeEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeE
Q 025700 5 NGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGNL 84 (249)
Q Consensus 5 ~~tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~~~g~~ 84 (249)
..+|||+|||.++|+++|+++|++||.|.. |+|++++.+++++|||||+|.+.++|++|| .|++..|.|+.
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~ 106 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINR--------ITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRT 106 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEE--------EEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEE--------EEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeE
Confidence 579999999999999999999999999998 889999999999999999999999999999 79999999999
Q ss_pred EEEEecccCCC
Q 025700 85 IGVFIAESRGK 95 (249)
Q Consensus 85 i~V~~a~~~~~ 95 (249)
|+|+++++...
T Consensus 107 l~V~~a~~~~~ 117 (124)
T 2jwn_A 107 IKVLPKRTNMP 117 (124)
T ss_dssp CEEEESSCCCS
T ss_pred EEEEECCCCCC
Confidence 99999886543
No 83
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.76 E-value=5.6e-18 Score=156.55 Aligned_cols=85 Identities=21% Similarity=0.298 Sum_probs=80.0
Q ss_pred CCCeEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCe
Q 025700 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGN 83 (249)
Q Consensus 4 ~~~tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~~~g~ 83 (249)
+..+|||+|||..+|+++|+++|.+||.|.. |.|+.++.|++++|||||+|.++++|++||+.||++.|.++
T Consensus 101 ~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~--------v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr 172 (437)
T 3pgw_S 101 AFKTLFVARVNYDTTESKLRREFEVYGPIKR--------IHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGR 172 (437)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCeeE--------EEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCE
Confidence 4579999999999999999999999999998 88999999999999999999999999999999999999999
Q ss_pred EEEEEecccCCCC
Q 025700 84 LIGVFIAESRGKD 96 (249)
Q Consensus 84 ~i~V~~a~~~~~~ 96 (249)
.|.|.++.++...
T Consensus 173 ~i~V~~a~~~~~~ 185 (437)
T 3pgw_S 173 RVLVDVERGRTVK 185 (437)
T ss_pred EEEEEEeCCCCCC
Confidence 9999999876543
No 84
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.76 E-value=4.4e-18 Score=130.63 Aligned_cols=85 Identities=24% Similarity=0.345 Sum_probs=79.0
Q ss_pred CCCCeEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 025700 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (249)
Q Consensus 3 ~~~~tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~~~g 82 (249)
.++.+|||+|||.++++++|+++|.+||.|.. |+|+.++ +++++|||||+|.+.++|++||+.|++..|.|
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~--------v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 103 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKK--------AAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDG 103 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSE--------EEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeE--------EEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 35679999999999999999999999999988 8899998 89999999999999999999999999999999
Q ss_pred eEEEEEecccCCCC
Q 025700 83 NLIGVFIAESRGKD 96 (249)
Q Consensus 83 ~~i~V~~a~~~~~~ 96 (249)
+.|+|++|.+....
T Consensus 104 ~~l~V~~a~~~~~~ 117 (124)
T 2kt5_A 104 RPMDIQLVASQIDL 117 (124)
T ss_dssp CEEEEEEECCTTCC
T ss_pred cEEEEEEeCCCCCC
Confidence 99999999876543
No 85
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.5e-18 Score=131.18 Aligned_cols=82 Identities=18% Similarity=0.297 Sum_probs=77.4
Q ss_pred CCeEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeE
Q 025700 5 NGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGNL 84 (249)
Q Consensus 5 ~~tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~~~g~~ 84 (249)
..+|||+|||.++|+++|+++|.+||.|.. |+|+.++.|++++|||||+|.+.++|++|| .|++..|.|+.
T Consensus 25 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~ 95 (114)
T 2cq4_A 25 ARTVFCMQLAARIRPRDLEDFFSAVGKVRD--------VRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVP 95 (114)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHTTTSCEEE--------EEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEeE--------EEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeE
Confidence 469999999999999999999999999998 889999999999999999999999999999 89999999999
Q ss_pred EEEEecccCCC
Q 025700 85 IGVFIAESRGK 95 (249)
Q Consensus 85 i~V~~a~~~~~ 95 (249)
|+|++++++..
T Consensus 96 l~V~~a~~~~~ 106 (114)
T 2cq4_A 96 IIVQASQAEKN 106 (114)
T ss_dssp EEEEEHHHHHH
T ss_pred EEEEecCCCcc
Confidence 99999987543
No 86
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=1e-17 Score=125.68 Aligned_cols=78 Identities=23% Similarity=0.281 Sum_probs=71.7
Q ss_pred CCCCeEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 025700 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (249)
Q Consensus 3 ~~~~tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~~~g 82 (249)
....+|||+|||.++|+++|+++|.+||.|.. |+|+.+ +||||+|.++++|++||+.||+..|.+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~--------~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g 77 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCY--------ADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRS 77 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEE--------EEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeE--------EEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccC
Confidence 34689999999999999999999999999988 777765 799999999999999999999999999
Q ss_pred -----eEEEEEecccCCC
Q 025700 83 -----NLIGVFIAESRGK 95 (249)
Q Consensus 83 -----~~i~V~~a~~~~~ 95 (249)
+.|+|++++++..
T Consensus 78 ~~~~~~~i~V~~a~~~~~ 95 (108)
T 1x4c_A 78 HEGETAYIRVKVDGPRSP 95 (108)
T ss_dssp TTSCEEEEEEEESSCCSC
T ss_pred CcCcceEEEEEeCCCCCC
Confidence 9999999988654
No 87
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.76 E-value=9e-19 Score=122.51 Aligned_cols=75 Identities=24% Similarity=0.347 Sum_probs=71.3
Q ss_pred eEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeEEE
Q 025700 7 SVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGNLIG 86 (249)
Q Consensus 7 tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~~~g~~i~ 86 (249)
+|||+|||+++|+++|+++|++||.|.. |+++.++.+++++|||||+|.++++|++|++ +++..|.|+.|.
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~ 71 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDD--------AMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVE 71 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSE--------ECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCE
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEE--------EEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEE
Confidence 5999999999999999999999999988 7799999899999999999999999999998 999999999999
Q ss_pred EEec
Q 025700 87 VFIA 90 (249)
Q Consensus 87 V~~a 90 (249)
|++|
T Consensus 72 v~~A 75 (75)
T 2mss_A 72 CKKA 75 (75)
T ss_dssp EECC
T ss_pred EEeC
Confidence 9875
No 88
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.5e-18 Score=129.60 Aligned_cols=80 Identities=19% Similarity=0.342 Sum_probs=74.9
Q ss_pred CCCCeEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 025700 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (249)
Q Consensus 3 ~~~~tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~~~g 82 (249)
.+..+|||+|||+++|+++|+++|++||.|.. |+|++++. ++++|||||+|.++++|++||+ +++..|.|
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~--------v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~g 78 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLN--------IQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKE 78 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEE--------EEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTT
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEE--------EEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECC
Confidence 45689999999999999999999999999998 88999987 9999999999999999999999 89999999
Q ss_pred eEEEEEeccc
Q 025700 83 NLIGVFIAES 92 (249)
Q Consensus 83 ~~i~V~~a~~ 92 (249)
+.|.|.++..
T Consensus 79 r~l~V~~~~~ 88 (103)
T 1s79_A 79 TDLLILFKDD 88 (103)
T ss_dssp TTCEEEEHHH
T ss_pred EEEEEEEchH
Confidence 9999998664
No 89
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.76 E-value=3.2e-18 Score=133.47 Aligned_cols=80 Identities=26% Similarity=0.350 Sum_probs=75.6
Q ss_pred CCCCeEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 025700 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (249)
Q Consensus 3 ~~~~tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~~~g 82 (249)
.+..+|||+|||.++|+++|+++|++||.|.. |+|++++.+++++|||||+|.++++|++||+.|++..|.|
T Consensus 61 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~--------v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 132 (140)
T 2ku7_A 61 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITD--------IQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFG 132 (140)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHHGGGSCEEE--------EECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETT
T ss_pred CCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEE--------EEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 45789999999999999999999999999998 8899999999999999999999999999999999999999
Q ss_pred eEEEEEec
Q 025700 83 NLIGVFIA 90 (249)
Q Consensus 83 ~~i~V~~a 90 (249)
+.|+|++|
T Consensus 133 ~~l~v~~A 140 (140)
T 2ku7_A 133 RTIRVNLA 140 (140)
T ss_dssp EEEEEEC-
T ss_pred EEEEEEeC
Confidence 99999875
No 90
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.76 E-value=4.1e-18 Score=126.47 Aligned_cols=79 Identities=27% Similarity=0.231 Sum_probs=71.1
Q ss_pred CCCCCeEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCce--
Q 025700 2 TMANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKD-- 79 (249)
Q Consensus 2 ~~~~~tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~-- 79 (249)
.+|+.+|||+|||.++|+++|+++|++||.|.. |++++ .||||||+|++.++|++||+.|++..
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~--------v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~ 83 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISY--------VVVMP------KKRQALVEFEDVLGACNAVNYAADNQIY 83 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEE--------EEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEE--------EEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCce
Confidence 467899999999999999999999999999988 66764 46899999999999999999998765
Q ss_pred ecCeEEEEEecccCC
Q 025700 80 FHGNLIGVFIAESRG 94 (249)
Q Consensus 80 ~~g~~i~V~~a~~~~ 94 (249)
|.|++|.|++++++.
T Consensus 84 i~Gr~i~V~~S~~k~ 98 (100)
T 3r27_A 84 IAGHPAFVNYSTSQK 98 (100)
T ss_dssp ETTEEEEEEECSCSC
T ss_pred eCCcEEEEEeccccc
Confidence 789999999998765
No 91
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=9.1e-18 Score=121.62 Aligned_cols=79 Identities=23% Similarity=0.293 Sum_probs=71.9
Q ss_pred CCCCCeEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceec
Q 025700 2 TMANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFH 81 (249)
Q Consensus 2 ~~~~~tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~~~ 81 (249)
..+..+|||+|||.++|+++|+++|++||.|.. |+|+ ++||||+|.++++|++||+.|++..|.
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~--------v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~ 68 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLE--------CDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLH 68 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEE--------EEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCS
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEE--------EEEE--------CCEEEEEECCHHHHHHHHHHhcCCccC
Confidence 356789999999999999999999999999988 6665 579999999999999999999999999
Q ss_pred CeEEEEEecccCCCC
Q 025700 82 GNLIGVFIAESRGKD 96 (249)
Q Consensus 82 g~~i~V~~a~~~~~~ 96 (249)
++.|+|++++++...
T Consensus 69 g~~l~v~~a~~~~~~ 83 (90)
T 2dnq_A 69 GVNINVEASKNKSKA 83 (90)
T ss_dssp SCBCEEECSSCCCCC
T ss_pred CcEEEEEECCCCCCC
Confidence 999999999877653
No 92
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.3e-18 Score=131.59 Aligned_cols=86 Identities=19% Similarity=0.258 Sum_probs=74.5
Q ss_pred CCCCeEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 025700 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (249)
Q Consensus 3 ~~~~tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~~~g 82 (249)
.++.+|||+|||.++|+++|+++|.+||.|..+. +..+..+++++|||||+|.+.++|++||+.|++..|.+
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~--------~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g 94 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPP--------IQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYG 94 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSC--------CEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceE--------EEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 4578999999999999999999999999986521 22222278899999999999999999999999999999
Q ss_pred eEEEEEecccCCCC
Q 025700 83 NLIGVFIAESRGKD 96 (249)
Q Consensus 83 ~~i~V~~a~~~~~~ 96 (249)
+.|+|++++++...
T Consensus 95 ~~l~v~~a~~~~~~ 108 (115)
T 2cpx_A 95 KILVIEFGKNKKQR 108 (115)
T ss_dssp CBCEEEECCCCSCC
T ss_pred cEEEEEEccCCCCC
Confidence 99999999877654
No 93
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=1.4e-18 Score=121.92 Aligned_cols=76 Identities=24% Similarity=0.355 Sum_probs=72.5
Q ss_pred CeEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeEE
Q 025700 6 GSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGNLI 85 (249)
Q Consensus 6 ~tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~~~g~~i 85 (249)
++|||+|||.++|+++|+++|++||.|.. |+++.++.+++++|||||+|.++++|++|++.++ ..+.|+.|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~--------v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l 71 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKE--------CLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTI 71 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCC--------EEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEE--------EEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEE
Confidence 47999999999999999999999999987 8899999999999999999999999999999999 99999999
Q ss_pred EEEec
Q 025700 86 GVFIA 90 (249)
Q Consensus 86 ~V~~a 90 (249)
.|++|
T Consensus 72 ~v~~a 76 (77)
T 1uaw_A 72 DPKVA 76 (77)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 99986
No 94
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.75 E-value=8.8e-19 Score=129.75 Aligned_cols=82 Identities=23% Similarity=0.364 Sum_probs=74.7
Q ss_pred CCCCeEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecC-CCCCcccEEEEEeCCHHHHHHHHHHhCCceec
Q 025700 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDK-TTNEYKGDATVTYEDPHAALAAVEWFNNKDFH 81 (249)
Q Consensus 3 ~~~~tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~-~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~~~ 81 (249)
...++|||+|||.++|+++|+++|++|| |.. |+|++++ .+++++|||||+|.+.++|++|| .|++..|.
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~--------v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~ 86 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISA--------VRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLG 86 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHHHHSCSSC-EEE--------EECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBT
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeE--------EEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEEC
Confidence 4578999999999999999999999999 887 8899988 68999999999999999999999 79999999
Q ss_pred CeEEEEEecccCC
Q 025700 82 GNLIGVFIAESRG 94 (249)
Q Consensus 82 g~~i~V~~a~~~~ 94 (249)
|+.|+|++++++.
T Consensus 87 g~~l~V~~a~~~~ 99 (100)
T 2j76_E 87 NRRIRVDVADQAQ 99 (100)
T ss_dssp TBCCCCEECCCSC
T ss_pred CeEEEEEeccCCC
Confidence 9999999998764
No 95
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=4.1e-18 Score=127.06 Aligned_cols=85 Identities=18% Similarity=0.305 Sum_probs=76.0
Q ss_pred CCCCeEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 025700 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (249)
Q Consensus 3 ~~~~tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~~~g 82 (249)
.+..+|||+|||+++|+++|+++|.+||.|... |+|+++ .+++++|||||+|.++++|++||+. ++..|.+
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~-------v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~g 83 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNG-------MTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGH 83 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEE-------EECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccee-------EEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCC
Confidence 457899999999999999999999999998753 667778 6899999999999999999999996 9999999
Q ss_pred eEEEEEecccCCCC
Q 025700 83 NLIGVFIAESRGKD 96 (249)
Q Consensus 83 ~~i~V~~a~~~~~~ 96 (249)
+.|+|.++.+++..
T Consensus 84 r~i~v~~~~~~~~~ 97 (104)
T 1wg5_A 84 RYIEIFKSSRAEVR 97 (104)
T ss_dssp SCCEEEEECTTTSC
T ss_pred cEEEEEECCHHHHH
Confidence 99999998766543
No 96
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=9.9e-18 Score=124.78 Aligned_cols=82 Identities=12% Similarity=0.189 Sum_probs=72.5
Q ss_pred CCCCCeEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHh--CCce
Q 025700 2 TMANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWF--NNKD 79 (249)
Q Consensus 2 ~~~~~tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l--~g~~ 79 (249)
..++.+|||+|||+++|+++|+++|++||.|.. |+|+++ ||||||+|+++++|++||+.| ++..
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~--------v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~ 77 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTN--------ILMLKG------KNQAFLELATEEAAITMVNYYSAVTPH 77 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEE--------EEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEE--------EEEECC------CCEEEEEECCHHHHHHHHHHhccCCce
Confidence 357889999999999999999999999999988 667654 689999999999999999976 4678
Q ss_pred ecCeEEEEEecccCCCCC
Q 025700 80 FHGNLIGVFIAESRGKDD 97 (249)
Q Consensus 80 ~~g~~i~V~~a~~~~~~~ 97 (249)
|.|++|.|.+++++....
T Consensus 78 ~~Gr~l~V~~a~~~~~~~ 95 (101)
T 2cq1_A 78 LRNQPIYIQYSNHKELKT 95 (101)
T ss_dssp ETTEECEEEECSCSSCCC
T ss_pred ECCcEEEEEEcCcccCcC
Confidence 999999999998776544
No 97
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.75 E-value=1.3e-18 Score=136.04 Aligned_cols=85 Identities=27% Similarity=0.305 Sum_probs=79.4
Q ss_pred CCCeEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCe
Q 025700 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGN 83 (249)
Q Consensus 4 ~~~tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~~~g~ 83 (249)
++++|||+|||.++|+++|+++|++||.|.. |+|+.++.+++++|||||+|.+.++|++||+.|++..|.++
T Consensus 46 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~--------v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~ 117 (135)
T 2lea_A 46 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGD--------VYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGR 117 (135)
T ss_dssp GCCCEEEECCCSSCHHHHHHHHHGGGSCCSE--------EECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEE--------EEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 4678999999999999999999999999988 88999999999999999999999999999999999999999
Q ss_pred EEEEEecccCCCC
Q 025700 84 LIGVFIAESRGKD 96 (249)
Q Consensus 84 ~i~V~~a~~~~~~ 96 (249)
.|+|+++++....
T Consensus 118 ~l~V~~a~~~~~~ 130 (135)
T 2lea_A 118 ELRVQMARYGRPP 130 (135)
T ss_dssp CCEEEECCCCCCC
T ss_pred EEEEEECCCCCCC
Confidence 9999999876543
No 98
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=8e-18 Score=128.84 Aligned_cols=82 Identities=13% Similarity=0.216 Sum_probs=73.3
Q ss_pred CCCCCeEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCC--ce
Q 025700 2 TMANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNN--KD 79 (249)
Q Consensus 2 ~~~~~tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g--~~ 79 (249)
.+++.+|||+|||+++||++|+++|++||.|.. |+|+++ ||||||+|+++++|++||+.|++ ..
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~--------v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~ 93 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTN--------LLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPV 93 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCE--------EEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEE--------EEEeCC------CCEEEEEECCHHHHHHHHHHhccCCce
Confidence 356889999999999999999999999999988 778765 68999999999999999998874 67
Q ss_pred ecCeEEEEEecccCCCCC
Q 025700 80 FHGNLIGVFIAESRGKDD 97 (249)
Q Consensus 80 ~~g~~i~V~~a~~~~~~~ 97 (249)
|.|++|.|.+++++....
T Consensus 94 l~Gr~l~V~~a~~k~~~~ 111 (119)
T 2ad9_A 94 LRGQPIYIQFSNHKELKT 111 (119)
T ss_dssp BTTBCCEEEECSSSSCCC
T ss_pred ECCeEEEEEEccCCCCCc
Confidence 999999999998876654
No 99
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.74 E-value=4.2e-18 Score=130.06 Aligned_cols=81 Identities=15% Similarity=0.208 Sum_probs=75.0
Q ss_pred CCCeEEecCCCCCCCHHHHHHHHHhcCC---eeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcee
Q 025700 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGL---LKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDF 80 (249)
Q Consensus 4 ~~~tI~V~nLp~~~te~dL~~~F~~~G~---i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~~ 80 (249)
+..+|||+|||+++|+++|+++|.+||. |.. |+|++++. ++++|||||+|.++++|++||+ +++..|
T Consensus 16 ~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~--------v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~ 85 (118)
T 2db1_A 16 EGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAG--------VHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESM 85 (118)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGG--------EEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCccCcee--------EEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeE
Confidence 4678999999999999999999999998 666 88999987 9999999999999999999999 999999
Q ss_pred cCeEEEEEecccCC
Q 025700 81 HGNLIGVFIAESRG 94 (249)
Q Consensus 81 ~g~~i~V~~a~~~~ 94 (249)
.++.|+|.++..++
T Consensus 86 ~gr~i~V~~a~~~~ 99 (118)
T 2db1_A 86 GHRYIEVFKSHRTE 99 (118)
T ss_dssp TTEEEEEEEECHHH
T ss_pred CCeEEEEEECCHHH
Confidence 99999999987654
No 100
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.74 E-value=8e-19 Score=127.06 Aligned_cols=81 Identities=27% Similarity=0.362 Sum_probs=73.5
Q ss_pred CeEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeEE
Q 025700 6 GSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGNLI 85 (249)
Q Consensus 6 ~tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~~~g~~i 85 (249)
++|||+|||.++++++|+++|++||.|.. |++++++.|++++|||||+|.+.+ |++|++.|++..+.|+.|
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l 72 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFN--------VKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTI 72 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSE--------EEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSC
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEE--------EEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEE
Confidence 48999999999999999999999999988 889999999999999999999999 999999999999999999
Q ss_pred EEEecccCCC
Q 025700 86 GVFIAESRGK 95 (249)
Q Consensus 86 ~V~~a~~~~~ 95 (249)
+|++|.++..
T Consensus 73 ~V~~a~~~~~ 82 (90)
T 2ki2_A 73 RVTEANPKKS 82 (90)
T ss_dssp SEEEC-----
T ss_pred EEEEcCCCCC
Confidence 9999987654
No 101
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=8.4e-18 Score=127.01 Aligned_cols=82 Identities=20% Similarity=0.275 Sum_probs=76.0
Q ss_pred CCCCeEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcee--
Q 025700 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDF-- 80 (249)
Q Consensus 3 ~~~~tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~~-- 80 (249)
.+..+|||+|||.++|+++|+++|.+||.|.. |+|++++ +++++|||||+|.+.++|++||+.||+..|
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~--------~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~ 93 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVIS--------TRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKT 93 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEE--------EEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEE--------EEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcC
Confidence 45689999999999999999999999999998 8899998 899999999999999999999999999998
Q ss_pred ------cCeEEEEEecccC
Q 025700 81 ------HGNLIGVFIAESR 93 (249)
Q Consensus 81 ------~g~~i~V~~a~~~ 93 (249)
.++.|.|.++.++
T Consensus 94 ~~~~~~~~~~l~v~~a~p~ 112 (114)
T 1x5o_A 94 PPGVSAPTEPLLCKFSGPS 112 (114)
T ss_dssp CTTSCCCSSCBEEEECCCS
T ss_pred CccccCCCCceeEEccCCC
Confidence 5788999998854
No 102
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=1.1e-17 Score=122.89 Aligned_cols=80 Identities=21% Similarity=0.181 Sum_probs=72.0
Q ss_pred CCCCCeEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceec
Q 025700 2 TMANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFH 81 (249)
Q Consensus 2 ~~~~~tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~~~ 81 (249)
..++.+|||+|||.++|+++|+++|++||.|.. |+++.+ ++||||+|.++++|++||+.||+..|.
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~--------v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~ 79 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRT--------IDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLG 79 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEE--------EEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeE--------EEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeC
Confidence 356789999999999999999999999999988 666543 679999999999999999999999999
Q ss_pred --CeEEEEEecccCCC
Q 025700 82 --GNLIGVFIAESRGK 95 (249)
Q Consensus 82 --g~~i~V~~a~~~~~ 95 (249)
++.|+|++++++..
T Consensus 80 ~~g~~l~V~~a~~~~~ 95 (97)
T 1why_A 80 GPDRRLRVDFAKSGPS 95 (97)
T ss_dssp SSSCBCEEEECCCCCC
T ss_pred CCCcEEEEEECCCCCC
Confidence 99999999987643
No 103
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=9.2e-18 Score=126.27 Aligned_cols=82 Identities=26% Similarity=0.257 Sum_probs=75.5
Q ss_pred CCCCeEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 025700 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (249)
Q Consensus 3 ~~~~tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~~~g 82 (249)
.+..+|||+|||.++|+++|+++|++||.|.. |+|++++ +.++|||||+|.+.++|++|++.|++..|.|
T Consensus 27 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~--------v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g 96 (109)
T 2err_A 27 SQPKRLHVSNIPFRFRDPDLRQMFGQFGKILD--------VEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEG 96 (109)
T ss_dssp TCCCEEEEESCCTTCCHHHHHHHGGGTCCCSC--------EEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEECCCCcCCHHHHHHHHHhcCCEEE--------EEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 45789999999999999999999999999988 7888886 3589999999999999999999999999999
Q ss_pred eEEEEEecccCC
Q 025700 83 NLIGVFIAESRG 94 (249)
Q Consensus 83 ~~i~V~~a~~~~ 94 (249)
+.|+|++++++.
T Consensus 97 ~~l~V~~a~~~~ 108 (109)
T 2err_A 97 RKIEVNNATARV 108 (109)
T ss_dssp EECEEEECCCSC
T ss_pred EEEEEEECCCCc
Confidence 999999998763
No 104
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.74 E-value=1.1e-18 Score=129.16 Aligned_cols=82 Identities=16% Similarity=0.106 Sum_probs=74.4
Q ss_pred CCCeEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCe
Q 025700 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGN 83 (249)
Q Consensus 4 ~~~tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~~~g~ 83 (249)
+..+|||+|||.++|+++|+++|.+||.|.. . ++.++.+++++|||||+|.+.++|++||+ |++..|.++
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~--------~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~ 85 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISELFAKND-L--------AVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGN 85 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-C--------CCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTB
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-E--------EEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCc
Confidence 5679999999999999999999999998876 2 56676788999999999999999999999 999999999
Q ss_pred EEEEEecccCCC
Q 025700 84 LIGVFIAESRGK 95 (249)
Q Consensus 84 ~i~V~~a~~~~~ 95 (249)
.|+|.+++++..
T Consensus 86 ~l~V~~a~~~~~ 97 (101)
T 1fj7_A 86 EIKLEKPKGRDG 97 (101)
T ss_dssp CCEEECCSCCCC
T ss_pred EEEEEEcCCCCC
Confidence 999999987654
No 105
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.74 E-value=1.4e-17 Score=120.15 Aligned_cols=75 Identities=20% Similarity=0.076 Sum_probs=69.4
Q ss_pred CCCCeEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 025700 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (249)
Q Consensus 3 ~~~~tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~~~g 82 (249)
..+..|||+||++.+||++|+++|.+||.|.. ++++. +||||||+|.++++|++|++.||+..+.+
T Consensus 5 ~~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~--------~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~g 70 (89)
T 2wbr_A 5 WGSSWLLLKNLTAQIDGPTLRTLCMQHGPLVS--------FHPYL------NQGIALCKYTTREEANKAQMALNNCVLAN 70 (89)
T ss_dssp CCCCEEEEECCCTTCCCHHHHHHHHHHSCEEE--------EEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred CccceEEEeCCCccCCHHHHHHHHHhhCCEEE--------EEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECC
Confidence 45778999999999999999999999999998 66654 68999999999999999999999999999
Q ss_pred eEEEEEecc
Q 025700 83 NLIGVFIAE 91 (249)
Q Consensus 83 ~~i~V~~a~ 91 (249)
++|+|++|.
T Consensus 71 r~I~V~~A~ 79 (89)
T 2wbr_A 71 TTIFAESPS 79 (89)
T ss_dssp EEEEEECCC
T ss_pred cEEEEEECC
Confidence 999999984
No 106
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=8.7e-18 Score=125.74 Aligned_cols=81 Identities=20% Similarity=0.120 Sum_probs=71.1
Q ss_pred CCCCCeEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCC--ce
Q 025700 2 TMANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNN--KD 79 (249)
Q Consensus 2 ~~~~~tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g--~~ 79 (249)
..++.+|||+|||+++|+++|+++|++||.|.. |+|+++ |+||||+|+++++|++||+.|++ ..
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~--------v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~ 77 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICY--------VMMMPF------KRQALVEFENIDSAKECVTFAADVPVY 77 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEE--------EEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEE--------EEEECC------CCEEEEEECCHHHHHHHHHHhccCCce
Confidence 356889999999999999999999999999988 667653 68999999999999999998865 45
Q ss_pred ecCeEEEEEecccCCCC
Q 025700 80 FHGNLIGVFIAESRGKD 96 (249)
Q Consensus 80 ~~g~~i~V~~a~~~~~~ 96 (249)
|.|+.|.|++++.+...
T Consensus 78 i~Gr~l~V~~a~~~~~~ 94 (104)
T 1wex_A 78 IAGQQAFFNYSTSKRIT 94 (104)
T ss_dssp SSSSBCEEEECSSSSCC
T ss_pred ECCEEEEEEEccCcccc
Confidence 89999999999876654
No 107
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=5.1e-18 Score=126.60 Aligned_cols=80 Identities=13% Similarity=0.221 Sum_probs=70.9
Q ss_pred CCCCCeEEecCCCC-CCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCC--c
Q 025700 2 TMANGSVYVCNLPH-GTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNN--K 78 (249)
Q Consensus 2 ~~~~~tI~V~nLp~-~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g--~ 78 (249)
..++.+|||+|||+ ++|++||+++|++||.|.. |+|+++ ++||||+|+++++|++||+.|++ .
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~--------v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~ 77 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISN--------HLILNK------INEAFIEMATTEDAQAAVDYYTTTPA 77 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEE--------EEECSS------SSCEEEEESSHHHHHHHHHHHHHSCC
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEE--------EEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCc
Confidence 45788999999999 9999999999999999998 777765 47999999999999999998885 4
Q ss_pred eecCeEEEEEecccCCC
Q 025700 79 DFHGNLIGVFIAESRGK 95 (249)
Q Consensus 79 ~~~g~~i~V~~a~~~~~ 95 (249)
.|.|++|.|++|+....
T Consensus 78 ~~~Gr~l~V~~a~~~~~ 94 (102)
T 1x4d_A 78 LVFGKPVRVHLSQKYKR 94 (102)
T ss_dssp EETTEECEEEEECCCTT
T ss_pred eECCcEEEEEECCCCCC
Confidence 59999999999986543
No 108
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2.6e-17 Score=123.50 Aligned_cols=80 Identities=16% Similarity=0.363 Sum_probs=73.1
Q ss_pred CCCCeEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 025700 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (249)
Q Consensus 3 ~~~~tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~~~g 82 (249)
.+..+|||+|||.++|+++|+++|.+||.|.. |+|+.+ ++||||+|.+.++|++||+.|++..|.|
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~--------v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g 88 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIME--------IRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEG 88 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEE--------EEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEE--------EEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 45789999999999999999999999999988 777765 6899999999999999999999999999
Q ss_pred eEEEEEecccCCCC
Q 025700 83 NLIGVFIAESRGKD 96 (249)
Q Consensus 83 ~~i~V~~a~~~~~~ 96 (249)
+.|+|.+++++...
T Consensus 89 ~~l~v~~a~~~~~~ 102 (109)
T 1x4g_A 89 HVVKCYWGKESPDM 102 (109)
T ss_dssp EECEEECCCCCCSS
T ss_pred cEEEEEecCCCCCC
Confidence 99999999877653
No 109
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=2.8e-17 Score=119.51 Aligned_cols=78 Identities=22% Similarity=0.268 Sum_probs=70.6
Q ss_pred CCCCeEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 025700 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (249)
Q Consensus 3 ~~~~tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~~~g 82 (249)
.++.+|||+|||.++|+++|+++|++||.|.. |++++ +||||+|.++++|++||+.|++..|.+
T Consensus 8 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~--------v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g 71 (92)
T 2dgt_A 8 KASTKLHVGNISPTCTNQELRAKFEEYGPVIE--------CDIVK--------DYAFVHMERAEDAVEAIRGLDNTEFQG 71 (92)
T ss_dssp CSSEEEEEESCCSSCCHHHHHHHHHTTSCCCE--------EEECS--------SEEEEEESCHHHHHHHHHHHTTEEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEE--------EEEEC--------CEEEEEECCHHHHHHHHHHhCCCeeCC
Confidence 46789999999999999999999999999987 66653 399999999999999999999999999
Q ss_pred eEEEEEecccCCCC
Q 025700 83 NLIGVFIAESRGKD 96 (249)
Q Consensus 83 ~~i~V~~a~~~~~~ 96 (249)
+.|+|++++++...
T Consensus 72 ~~l~V~~a~~~~~~ 85 (92)
T 2dgt_A 72 KRMHVQLSTSRLRT 85 (92)
T ss_dssp EEEEEEESSCCCSC
T ss_pred cEEEEEEccCCCCC
Confidence 99999999876553
No 110
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.73 E-value=4.7e-18 Score=133.21 Aligned_cols=82 Identities=13% Similarity=0.162 Sum_probs=75.4
Q ss_pred CCCCeEEecCCCCCCCHHHHHHHHHhcCC---eeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCce
Q 025700 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGL---LKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKD 79 (249)
Q Consensus 3 ~~~~tI~V~nLp~~~te~dL~~~F~~~G~---i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~ 79 (249)
.+..+|||+|||+++|+++|+++|++||. |.. |+|++++. ++++|||||+|.++++|++||+ |++..
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~--------v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~ 111 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAG--------VHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRES 111 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTT--------EEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeE--------EEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCE
Confidence 34679999999999999999999999998 555 88999987 9999999999999999999999 99999
Q ss_pred ecCeEEEEEecccCC
Q 025700 80 FHGNLIGVFIAESRG 94 (249)
Q Consensus 80 ~~g~~i~V~~a~~~~ 94 (249)
|.++.|+|.++.+++
T Consensus 112 l~gr~i~V~~a~~~e 126 (136)
T 2hgl_A 112 MGHRYIEVFKSHRTE 126 (136)
T ss_dssp SSSSEEEEEECCHHH
T ss_pred ECCEEEEEEECChHH
Confidence 999999999987554
No 111
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.73 E-value=8.9e-18 Score=125.43 Aligned_cols=82 Identities=17% Similarity=0.244 Sum_probs=74.2
Q ss_pred CCCeEEecCCCCCC------CHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCC
Q 025700 4 ANGSVYVCNLPHGT------DEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNN 77 (249)
Q Consensus 4 ~~~tI~V~nLp~~~------te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g 77 (249)
.+++|||+|||..+ |+++|+++|++||.|.. |+|+ +.|++++|||||+|.+.++|++||+.||+
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~--------v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g 83 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITN--------DFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADG 83 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEE--------EECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSS
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEE--------EEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCC
Confidence 36799999999999 78999999999999988 6666 56899999999999999999999999999
Q ss_pred ceecCe-EEEEEecccCCC
Q 025700 78 KDFHGN-LIGVFIAESRGK 95 (249)
Q Consensus 78 ~~~~g~-~i~V~~a~~~~~ 95 (249)
..|.|+ .|+|.++....+
T Consensus 84 ~~~~g~~~l~V~~a~~~~k 102 (105)
T 2nlw_A 84 YKLDKQHTFRVNLFTDFDK 102 (105)
T ss_dssp EECSTTCEEEEECSCCCCC
T ss_pred cccCCCceEEEEEcchHhh
Confidence 999998 999999876543
No 112
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.7e-17 Score=120.78 Aligned_cols=78 Identities=28% Similarity=0.362 Sum_probs=69.1
Q ss_pred CCCCeEEecCCCCCCCHHHHHHHHHhcCC-eeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCC-cee
Q 025700 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGL-LKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNN-KDF 80 (249)
Q Consensus 3 ~~~~tI~V~nLp~~~te~dL~~~F~~~G~-i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g-~~~ 80 (249)
.+.++|||+|||.++|+++|+++|.+||. |.. +.+ .+++||||+|.++++|++||+.||+ ..|
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~--------~~~-------~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 70 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAG--------QVL-------LKSGYAFVDYPDQNWAIRAIETLSGKVEL 70 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSS--------CEE-------EETTEEEECCSCHHHHHHHHHHHTTTCEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEE--------EEE-------cCCCEEEEEECCHHHHHHHHHHccCCeeE
Confidence 46789999999999999999999999999 544 333 2478999999999999999999999 999
Q ss_pred cCeEEEEEecccCCC
Q 025700 81 HGNLIGVFIAESRGK 95 (249)
Q Consensus 81 ~g~~i~V~~a~~~~~ 95 (249)
.++.|+|++++++..
T Consensus 71 ~g~~l~v~~a~~~~~ 85 (93)
T 2cqh_A 71 HGKIMEVDYSVSKKL 85 (93)
T ss_dssp TTEECEEEECCCCCC
T ss_pred CCEEEEEEEccCccc
Confidence 999999999987654
No 113
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2.2e-18 Score=132.45 Aligned_cols=82 Identities=16% Similarity=0.276 Sum_probs=74.8
Q ss_pred CCCeEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCe
Q 025700 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGN 83 (249)
Q Consensus 4 ~~~tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~~~g~ 83 (249)
+..+|||+|||+++|+++|+++|.+||.|.. +.++.+..|++++|||||+|.++++|++||+ |++..|.++
T Consensus 24 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~--------~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr 94 (124)
T 1wel_A 24 AGFCVYLKGLPFEAENKHVIDFFKKLDIVED--------SIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNR 94 (124)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHSCSSCBCTT--------TCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCccc--------eEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCc
Confidence 4579999999999999999999999999987 3366777799999999999999999999999 999999999
Q ss_pred EEEEEecccCC
Q 025700 84 LIGVFIAESRG 94 (249)
Q Consensus 84 ~i~V~~a~~~~ 94 (249)
.|.|.++.++.
T Consensus 95 ~i~V~~a~~~~ 105 (124)
T 1wel_A 95 FIQVHPITKKG 105 (124)
T ss_dssp CBEEEEECHHH
T ss_pred EEEEEECCHHH
Confidence 99999987654
No 114
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.73 E-value=1.4e-18 Score=136.71 Aligned_cols=82 Identities=18% Similarity=0.323 Sum_probs=73.7
Q ss_pred CCCCeEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 025700 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (249)
Q Consensus 3 ~~~~tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~~~g 82 (249)
.+..+|||+|||+++||+||+++|++|| |.. |+|++++. ++++|||||+|+++++|++|| .+++..|.+
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~--------v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~g 112 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVR--------VHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQH 112 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSE--------EECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeE--------EEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECC
Confidence 3467999999999999999999999999 555 88999986 999999999999999999999 689999999
Q ss_pred eEEEEEecccCCC
Q 025700 83 NLIGVFIAESRGK 95 (249)
Q Consensus 83 ~~i~V~~a~~~~~ 95 (249)
+.|+|.++.++..
T Consensus 113 R~i~V~~a~~~~~ 125 (139)
T 2hgn_A 113 RYIELFLNSTTGA 125 (139)
T ss_dssp CCCCCEECCCSCC
T ss_pred EEEEEEECCCCCC
Confidence 9999999876654
No 115
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=5.3e-18 Score=127.97 Aligned_cols=78 Identities=21% Similarity=0.299 Sum_probs=71.7
Q ss_pred CCeEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeE
Q 025700 5 NGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGNL 84 (249)
Q Consensus 5 ~~tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~~~g~~ 84 (249)
..+|||+|||+++|++||+++|++| .|.. |+|++++. ++++|||||+|.++++|++|| .+++..|.++.
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~--------v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~ 84 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDA--------VHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRY 84 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCE--------EEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeE--------EEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeE
Confidence 4689999999999999999999999 7766 88999986 999999999999999999999 59999999999
Q ss_pred EEEEecccC
Q 025700 85 IGVFIAESR 93 (249)
Q Consensus 85 i~V~~a~~~ 93 (249)
|.|..+.++
T Consensus 85 i~V~~a~~~ 93 (109)
T 2dnn_A 85 VEVSPATER 93 (109)
T ss_dssp EEEEECCHH
T ss_pred EEEEECCcc
Confidence 999988754
No 116
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.72 E-value=3.8e-18 Score=119.19 Aligned_cols=75 Identities=23% Similarity=0.352 Sum_probs=70.6
Q ss_pred eEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeEEE
Q 025700 7 SVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGNLIG 86 (249)
Q Consensus 7 tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~~~g~~i~ 86 (249)
+|||+|||.++|+++|+++|++||.|.. |++++++.+++++|||||+|.++++|++||+ +++..+.|+.|.
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~ 71 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVES--------IELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCE 71 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSE--------ECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEE--------EEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEE
Confidence 6999999999999999999999999988 7799999999999999999999999999999 588899999999
Q ss_pred EEec
Q 025700 87 VFIA 90 (249)
Q Consensus 87 V~~a 90 (249)
|++|
T Consensus 72 v~~a 75 (75)
T 1iqt_A 72 IKVA 75 (75)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 9875
No 117
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=7.6e-17 Score=118.77 Aligned_cols=77 Identities=29% Similarity=0.377 Sum_probs=69.3
Q ss_pred CCCCeEEecCCCCCCCHHHHHHHHHhc--CCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcee
Q 025700 3 MANGSVYVCNLPHGTDEDMLAEYFGTI--GLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDF 80 (249)
Q Consensus 3 ~~~~tI~V~nLp~~~te~dL~~~F~~~--G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~~ 80 (249)
.++.+|||+|||.++|+++|+++|.+| |.|.. |++ +++||||+|.+.++|++||+.|++..|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~--------~~~--------~~g~afV~f~~~~~A~~A~~~l~g~~~ 76 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVER--------VKK--------IRDYAFVHFSNREDAVEAMKALNGKVL 76 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEE--------EEE--------CSSEEEEEESSHHHHHHHHHHHSSEEE
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEE--------EEE--------eCCeEEEEeCCHHHHHHHHHHhCCCEe
Confidence 467899999999999999999999999 88876 444 257999999999999999999999999
Q ss_pred cCeEEEEEecccCCC
Q 025700 81 HGNLIGVFIAESRGK 95 (249)
Q Consensus 81 ~g~~i~V~~a~~~~~ 95 (249)
.++.|+|++++++..
T Consensus 77 ~g~~l~v~~a~~~~~ 91 (99)
T 2cpd_A 77 DGSPIEVTLAKPVDK 91 (99)
T ss_dssp TTEEEEEECCCCCCC
T ss_pred CCcEEEEEECCCCCC
Confidence 999999999987654
No 118
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=5e-17 Score=117.68 Aligned_cols=77 Identities=22% Similarity=0.230 Sum_probs=70.3
Q ss_pred CCCCeEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 025700 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (249)
Q Consensus 3 ~~~~tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~~~g 82 (249)
.++.+|||+|||.++|+++|+++|++||.|.. |+|++ +||||+|.++++|++||+.|++..|.+
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~--------~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g 70 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVIE--------CDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKG 70 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEEE--------EEECS--------SCEEEEESCHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEE--------EEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 46789999999999999999999999999988 66653 399999999999999999999999999
Q ss_pred eEEEEEecccCCC
Q 025700 83 NLIGVFIAESRGK 95 (249)
Q Consensus 83 ~~i~V~~a~~~~~ 95 (249)
+.|+|++++++..
T Consensus 71 ~~l~v~~a~~~~~ 83 (90)
T 2dnp_A 71 KRINVELSTKGQK 83 (90)
T ss_dssp EECEEEESCCCCC
T ss_pred cEEEEEECCCCCC
Confidence 9999999987644
No 119
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=2.5e-17 Score=121.39 Aligned_cols=80 Identities=23% Similarity=0.282 Sum_probs=72.4
Q ss_pred CCCCeEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 025700 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (249)
Q Consensus 3 ~~~~tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~~~g 82 (249)
.++.+|||+|||.++|+++|+++|.+||.|.. |+|+++ ++||||+|.++++|++||+.|++..|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~--------v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g 78 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGE--------VFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRG 78 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSE--------EEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEE--------EEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 46789999999999999999999999999987 667643 6899999999999999999999999999
Q ss_pred eEEEEEecccCCCC
Q 025700 83 NLIGVFIAESRGKD 96 (249)
Q Consensus 83 ~~i~V~~a~~~~~~ 96 (249)
+.|+|++++++...
T Consensus 79 ~~l~v~~a~~~~~~ 92 (99)
T 2cpj_A 79 KQLRVRFACHSASL 92 (99)
T ss_dssp BCCEEEESSCCSCC
T ss_pred ceEEEEEcCCCCCC
Confidence 99999999876543
No 120
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.72 E-value=1.5e-17 Score=121.88 Aligned_cols=83 Identities=20% Similarity=0.337 Sum_probs=74.4
Q ss_pred CCCCCeEEecCCCCCCCHHHHH----HHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCC
Q 025700 2 TMANGSVYVCNLPHGTDEDMLA----EYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNN 77 (249)
Q Consensus 2 ~~~~~tI~V~nLp~~~te~dL~----~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g 77 (249)
.+++.+|||+|||.++|+++|+ ++|.+||.|.. |+++. +++++|||||+|.+.++|++|++.|++
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~--------v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g 73 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILD--------ILVSR---SLKMRGQAFVIFKEVSSATNALRSMQG 73 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEE--------EECCH---HHHHTTCEEEEESSHHHHHHHHHHHTT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEE--------EEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCC
Confidence 4678899999999999999999 99999999987 55553 577899999999999999999999999
Q ss_pred ceecCeEEEEEecccCCC
Q 025700 78 KDFHGNLIGVFIAESRGK 95 (249)
Q Consensus 78 ~~~~g~~i~V~~a~~~~~ 95 (249)
..|.|+.|+|++++++..
T Consensus 74 ~~~~g~~l~v~~a~~~~~ 91 (97)
T 1nu4_A 74 FPFYDKPMRIQYAKTDSD 91 (97)
T ss_dssp CEETTEECEEEECSSCCT
T ss_pred CEECCcEEEEEEccCCCc
Confidence 999999999999987653
No 121
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.72 E-value=2e-17 Score=122.32 Aligned_cols=77 Identities=32% Similarity=0.454 Sum_probs=71.5
Q ss_pred CeEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeEE
Q 025700 6 GSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGNLI 85 (249)
Q Consensus 6 ~tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~~~g~~i 85 (249)
++|||+|||.++|+++|+++|++||.|.. |+|+.+ +++||||+|.++++|++||+.|++..+.|+.|
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~--------v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 67 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRT--------VWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRV 67 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSE--------EEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEE--------EEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEE
Confidence 48999999999999999999999999987 778776 68899999999999999999999999999999
Q ss_pred EEEecccCCC
Q 025700 86 GVFIAESRGK 95 (249)
Q Consensus 86 ~V~~a~~~~~ 95 (249)
+|++++++..
T Consensus 68 ~V~~a~~~~~ 77 (101)
T 2hvz_A 68 RVELSTGMPR 77 (101)
T ss_dssp EEEESSSCCC
T ss_pred EEEEccCCCC
Confidence 9999987764
No 122
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=3e-17 Score=120.56 Aligned_cols=79 Identities=23% Similarity=0.282 Sum_probs=70.6
Q ss_pred CCCeEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCe
Q 025700 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGN 83 (249)
Q Consensus 4 ~~~tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~~~g~ 83 (249)
.+.+|||+|||.++|+++|+++|.+||.|. +.++.+ ++++||||+|.++++|++||+.||+..|.|+
T Consensus 18 ~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~---------~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 84 (97)
T 2e5j_A 18 LAADVYVGNLPRDARVSDLKRALRELGSVP---------LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTD 84 (97)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHHTTCCC---------SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSS
T ss_pred CCCEEEEeCCCCcCcHHHHHHHHHhcCCEE---------EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence 478999999999999999999999999985 235543 5789999999999999999999999999999
Q ss_pred EEEEEecccCCC
Q 025700 84 LIGVFIAESRGK 95 (249)
Q Consensus 84 ~i~V~~a~~~~~ 95 (249)
.|+|++++++..
T Consensus 85 ~l~V~~a~~~~~ 96 (97)
T 2e5j_A 85 TLRVALARQQRD 96 (97)
T ss_dssp CCEEEECCCCCC
T ss_pred EEEEEEcCCCCC
Confidence 999999987643
No 123
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.72 E-value=2.1e-17 Score=125.09 Aligned_cols=79 Identities=18% Similarity=0.249 Sum_probs=69.4
Q ss_pred CCCCeEEecCCCCCCCHHHHHHHHHhcC-CeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceec
Q 025700 3 MANGSVYVCNLPHGTDEDMLAEYFGTIG-LLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFH 81 (249)
Q Consensus 3 ~~~~tI~V~nLp~~~te~dL~~~F~~~G-~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~~~ 81 (249)
....+|||+|||+++|+++|+++|.+|| .|.. |+|+. .+++|||||+|.+.++|++||+.||+..|.
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~--------v~i~~----~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~ 93 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTF--------SSVNT----RDFDGTGALEFPSEEILVEALERLNNIEFR 93 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSE--------EECSS----CSSSCCEEEEESSHHHHHHHHHHTTTEEET
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEE--------EEEEc----CCCCCEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 3456999999999999999999999999 7876 55543 247899999999999999999999999999
Q ss_pred CeEEEEEecccC
Q 025700 82 GNLIGVFIAESR 93 (249)
Q Consensus 82 g~~i~V~~a~~~ 93 (249)
|+.|+|+++...
T Consensus 94 Gr~i~V~~a~~~ 105 (111)
T 2jvr_A 94 GSVITVERDDNP 105 (111)
T ss_dssp TEEEEEEESCC-
T ss_pred CeEEEEEECCCC
Confidence 999999998754
No 124
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.71 E-value=1.5e-17 Score=121.77 Aligned_cols=80 Identities=20% Similarity=0.268 Sum_probs=72.0
Q ss_pred CCCCeEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 025700 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (249)
Q Consensus 3 ~~~~tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~~~g 82 (249)
.+..+|||+|||.++|+++|+++|.+||.|.. | ..+++++|||||+|.++++|++||+.|++..|.|
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~--------~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 80 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDALEIRL--------V-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDG 80 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSEEEECC--------E-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEE--------e-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 34679999999999999999999999998765 3 3468899999999999999999999999999999
Q ss_pred eEEEEEecccCCC
Q 025700 83 NLIGVFIAESRGK 95 (249)
Q Consensus 83 ~~i~V~~a~~~~~ 95 (249)
+.|+|+++.++..
T Consensus 81 ~~l~v~~a~~~~~ 93 (96)
T 1fjc_A 81 RSVSLYYTGEKGG 93 (96)
T ss_dssp EEEEEEECSSSCC
T ss_pred eEEEEEEcCCCCC
Confidence 9999999987654
No 125
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.71 E-value=6.2e-18 Score=120.22 Aligned_cols=73 Identities=18% Similarity=0.287 Sum_probs=66.9
Q ss_pred CCeEEecCCCCCC------CHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCc
Q 025700 5 NGSVYVCNLPHGT------DEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNK 78 (249)
Q Consensus 5 ~~tI~V~nLp~~~------te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~ 78 (249)
+++|||+|||..+ |+++|+++|++||.|.. |+|+ +.|++++|||||+|.++++|++||+.||+.
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~--------v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~ 70 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITN--------DFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGY 70 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEE--------EECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEE--------EEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCc
Confidence 4789999999999 78999999999999988 6665 568999999999999999999999999999
Q ss_pred eecCe-EEEE
Q 025700 79 DFHGN-LIGV 87 (249)
Q Consensus 79 ~~~g~-~i~V 87 (249)
.|.|+ +|+|
T Consensus 71 ~~~g~~~l~V 80 (81)
T 2krb_A 71 KLDKQHTFRV 80 (81)
T ss_dssp CCSSSSCCCC
T ss_pred ccCCceeEEe
Confidence 99998 8876
No 126
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.71 E-value=3e-17 Score=127.17 Aligned_cols=82 Identities=18% Similarity=0.271 Sum_probs=72.6
Q ss_pred CCCCeEEecCCCCCCCHHHHH----HHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCc
Q 025700 3 MANGSVYVCNLPHGTDEDMLA----EYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNK 78 (249)
Q Consensus 3 ~~~~tI~V~nLp~~~te~dL~----~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~ 78 (249)
.++.+|||+|||+.+++++|+ ++|++||.|.. |.+. .+++++|||||+|.+.++|+.||+.||+.
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~--------v~i~---~~~~~rG~aFV~F~~~~~A~~Ai~~lng~ 95 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILD--------IVVD---LSDDNSGKAYIVFATQESAQAFVEAFQGY 95 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEE--------EEEC---CCCSSCCCEEEEESSHHHHHHHHHHSTTC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEE--------EEec---cCCCcCCEEEEEECCHHHHHHHHHHHCCC
Confidence 467899999999999999876 69999999977 5553 36789999999999999999999999999
Q ss_pred eecCeEEEEEecccCCC
Q 025700 79 DFHGNLIGVFIAESRGK 95 (249)
Q Consensus 79 ~~~g~~i~V~~a~~~~~ 95 (249)
.|.|+.|+|.+++.+..
T Consensus 96 ~l~gr~l~V~~a~~~~~ 112 (127)
T 2a3j_A 96 PFQGNPLVITFSETPQS 112 (127)
T ss_dssp CCTTSCCEEEECCCCCH
T ss_pred EeCCCEEEEEEccCcch
Confidence 99999999999987543
No 127
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.71 E-value=5e-17 Score=135.88 Aligned_cols=84 Identities=25% Similarity=0.338 Sum_probs=77.8
Q ss_pred CCCCeEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 025700 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (249)
Q Consensus 3 ~~~~tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~~~g 82 (249)
.+.++|||+|||.++||++|+++|++||.|.. |+|++|+.|++++|||||+|.++++|++||+.+++..+.+
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~--------v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g 84 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILS--------IRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKG 84 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEE--------EEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEE--------EEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCC
Confidence 35689999999999999999999999999998 8899999999999999999999999999999999999999
Q ss_pred eEEEEEecccCC
Q 025700 83 NLIGVFIAESRG 94 (249)
Q Consensus 83 ~~i~V~~a~~~~ 94 (249)
+.|+|.++....
T Consensus 85 ~~i~~~~~~~~~ 96 (213)
T 4f02_A 85 KPVRIMWSQRDP 96 (213)
T ss_dssp EECEEEECCCCT
T ss_pred cccccccccccc
Confidence 999999876543
No 128
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.71 E-value=5.9e-17 Score=121.71 Aligned_cols=76 Identities=24% Similarity=0.271 Sum_probs=69.1
Q ss_pred CCCeEEecCCCCC-CCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 025700 4 ANGSVYVCNLPHG-TDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (249)
Q Consensus 4 ~~~tI~V~nLp~~-~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~~~g 82 (249)
++.+|||+|||.+ +|+++|+++|.+||.|.. |+| +++||||+|.++++|++||+.|++..|.+
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~--------v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g 89 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAG--------CSV--------HKGYAFVQYSNERHARAAVLGENGRVLAG 89 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSE--------EEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETT
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEE--------EEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 3479999999999 999999999999999988 555 57899999999999999999999999999
Q ss_pred eEEEEEecccCCC
Q 025700 83 NLIGVFIAESRGK 95 (249)
Q Consensus 83 ~~i~V~~a~~~~~ 95 (249)
+.|+|++++++..
T Consensus 90 ~~l~V~~a~~~~~ 102 (110)
T 1wf1_A 90 QTLDINMAGEPKP 102 (110)
T ss_dssp EECCEEESCCCCS
T ss_pred eEEEEEECCCCCC
Confidence 9999999986543
No 129
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.71 E-value=2.9e-17 Score=121.40 Aligned_cols=76 Identities=22% Similarity=0.326 Sum_probs=69.7
Q ss_pred CCCeEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCe
Q 025700 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGN 83 (249)
Q Consensus 4 ~~~tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~~~g~ 83 (249)
.+++|||+|||.++|+++|+++|++||.|.. |+++ ++++||||+|.+.++|++||+.|++..|.|+
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~--------~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 91 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILD--------FKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGR 91 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSE--------EEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEE--------EEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCe
Confidence 4689999999999999999999999999988 6676 3578999999999999999999999999999
Q ss_pred EEEEEecccC
Q 025700 84 LIGVFIAESR 93 (249)
Q Consensus 84 ~i~V~~a~~~ 93 (249)
.|+|.+++++
T Consensus 92 ~l~V~~a~~~ 101 (101)
T 2la4_A 92 NLRTGWGKER 101 (101)
T ss_dssp ECCCCBCCCC
T ss_pred EEEEEeccCC
Confidence 9999998763
No 130
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.71 E-value=8.3e-17 Score=118.57 Aligned_cols=77 Identities=14% Similarity=0.279 Sum_probs=70.2
Q ss_pred CCCCCeEEecCCCC-CCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcee
Q 025700 2 TMANGSVYVCNLPH-GTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDF 80 (249)
Q Consensus 2 ~~~~~tI~V~nLp~-~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~~ 80 (249)
.+++.+|||+|||. ++++++|+++|++||.|.. |+| ++|||||+|.+.++|++||+.|++..+
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~--------v~i--------~~g~afV~f~~~~~A~~Ai~~l~g~~~ 82 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQ--------INI--------KNAFGFIQFDNPQSVRDAIEXESQEMN 82 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEE--------EEE--------CSSEEEEEESSHHHHHHHHHHHTTSEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEE--------EEE--------eCCEEEEEECCHHHHHHHHHHcCCCEE
Confidence 46789999999998 9999999999999999988 555 268999999999999999999999999
Q ss_pred cCeEEEEEecccCC
Q 025700 81 HGNLIGVFIAESRG 94 (249)
Q Consensus 81 ~g~~i~V~~a~~~~ 94 (249)
.|+.|+|++++++.
T Consensus 83 ~g~~l~V~~a~~~~ 96 (97)
T 2xnq_A 83 FGKKLILEVSSSNA 96 (97)
T ss_dssp TTEECEEEECCCCC
T ss_pred CCEEEEEEecCCCC
Confidence 99999999987653
No 131
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.71 E-value=2.7e-17 Score=120.68 Aligned_cols=79 Identities=14% Similarity=0.276 Sum_probs=70.1
Q ss_pred CCCCCeEEecCCCC-CCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcee
Q 025700 2 TMANGSVYVCNLPH-GTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDF 80 (249)
Q Consensus 2 ~~~~~tI~V~nLp~-~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~~ 80 (249)
.+++.+|||+|||. ++|+++|+++|++||.|.. |+|. ++||||+|.+.++|++||+.|++..+
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~--------v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~ 70 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQ--------INIK--------NAFGFIQFDNPQSVRDAIECESQEMN 70 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCE--------EEEE--------TTEEEEEESCHHHHHHHHHHHTCSSC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEE--------EEEe--------CCEEEEEECCHHHHHHHHHHcCCCee
Confidence 35788999999998 9999999999999999988 5562 68999999999999999999999999
Q ss_pred cCeEEEEEecccCCCC
Q 025700 81 HGNLIGVFIAESRGKD 96 (249)
Q Consensus 81 ~g~~i~V~~a~~~~~~ 96 (249)
.++.|+|++++++...
T Consensus 71 ~g~~l~V~~a~~~~~~ 86 (96)
T 2kvi_A 71 FGKKLILEVSSSNARP 86 (96)
T ss_dssp BTTTBCEEEEECCCC-
T ss_pred CCcEEEEEEcCcCCCC
Confidence 9999999999876543
No 132
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=1.6e-17 Score=128.03 Aligned_cols=84 Identities=17% Similarity=0.197 Sum_probs=73.7
Q ss_pred CCCCeEEecCCCCCCCHHHHHHHHHhcCCee--ecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcee
Q 025700 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLK--KDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDF 80 (249)
Q Consensus 3 ~~~~tI~V~nLp~~~te~dL~~~F~~~G~i~--~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~~ 80 (249)
.+..+|||+|||+++|++||+++|++||.|. ... |+|++++ +++++|||||+|.++++|++||+. ++..|
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~------v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l 92 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEG------ILFVTYP-DGRPTGDAFVLFACEEYAQNALRK-HKDLL 92 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGG------EEEEECT-TSCEEEEEEECCSSHHHHHHHHTT-TTEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcce------EEEEECC-CCCEeeEEEEEECCHHHHHHHHHh-CCCee
Confidence 4568999999999999999999999999863 111 8899885 899999999999999999999995 99999
Q ss_pred cCeEEEEEecccCC
Q 025700 81 HGNLIGVFIAESRG 94 (249)
Q Consensus 81 ~g~~i~V~~a~~~~ 94 (249)
.++.|+|..+.+++
T Consensus 93 ~gR~i~V~~a~~~e 106 (123)
T 2dha_A 93 GKRYIELFRSTAAE 106 (123)
T ss_dssp SSCEECCEEECHHH
T ss_pred CCeEEEEEECCHHH
Confidence 99999999887544
No 133
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=5.8e-17 Score=118.36 Aligned_cols=79 Identities=27% Similarity=0.315 Sum_probs=71.1
Q ss_pred CCCCeEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 025700 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (249)
Q Consensus 3 ~~~~tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~~~g 82 (249)
....+|||+|||.++|+++|+++|.+||.|.. |+.++.+++ ||||+|.++++|++||+ |++..|.|
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~----------v~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g 71 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVAS----------VVMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGG 71 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEE----------EEECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETT
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEE----------EEEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECC
Confidence 45679999999999999999999999999976 477777776 99999999999999999 99999999
Q ss_pred eEEEEEecccCCC
Q 025700 83 NLIGVFIAESRGK 95 (249)
Q Consensus 83 ~~i~V~~a~~~~~ 95 (249)
+.|.|+++.++..
T Consensus 72 ~~l~V~~a~~~~~ 84 (94)
T 2e5g_A 72 HRLRVRPREQKEF 84 (94)
T ss_dssp EECCCBCSCCSCC
T ss_pred EEEEEEECCcCCC
Confidence 9999998876544
No 134
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.70 E-value=1e-16 Score=127.23 Aligned_cols=83 Identities=28% Similarity=0.387 Sum_probs=78.5
Q ss_pred CCCeEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCe
Q 025700 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGN 83 (249)
Q Consensus 4 ~~~tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~~~g~ 83 (249)
++++|||+|||.++|+++|+++|++||.|.. |++++++.+++++|||||+|.++++|++|++.|++..+.++
T Consensus 1 s~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~--------v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~ 72 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIES--------CKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTK 72 (167)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEE--------EEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCeEE--------EEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCc
Confidence 4689999999999999999999999999998 88999999999999999999999999999999999999999
Q ss_pred EEEEEecccCC
Q 025700 84 LIGVFIAESRG 94 (249)
Q Consensus 84 ~i~V~~a~~~~ 94 (249)
.|.|.++.+..
T Consensus 73 ~l~v~~~~~~~ 83 (167)
T 1fxl_A 73 TIKVSYARPSS 83 (167)
T ss_dssp ECEEEECCCCC
T ss_pred eEEEEecCCCc
Confidence 99999987654
No 135
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.70 E-value=7e-17 Score=121.37 Aligned_cols=77 Identities=29% Similarity=0.448 Sum_probs=70.5
Q ss_pred CCCCeEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 025700 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (249)
Q Consensus 3 ~~~~tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~~~g 82 (249)
.++.+|||+|||.++|+++|+++|++||.|.. |+|+ +|||||+|.+.++|++||+.|++..|.|
T Consensus 29 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~--------v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g 92 (108)
T 2jvo_A 29 LSNTRLFVRPFPLDVQESELNEIFGPFGPMKE--------VKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFAN 92 (108)
T ss_dssp CSCSEEEECSSCTTCCHHHHHHHHTTTSCCCE--------EEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEE--------EEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 45789999999999999999999999999988 6665 6899999999999999999999999999
Q ss_pred eEEEEEecccCCC
Q 025700 83 NLIGVFIAESRGK 95 (249)
Q Consensus 83 ~~i~V~~a~~~~~ 95 (249)
+.|.|++++++..
T Consensus 93 ~~l~V~~a~~~~~ 105 (108)
T 2jvo_A 93 QPLEVVYSKLPAK 105 (108)
T ss_dssp EECEEESCSCCC-
T ss_pred eEEEEEEecCCCC
Confidence 9999999987654
No 136
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.70 E-value=6.3e-17 Score=122.32 Aligned_cols=82 Identities=23% Similarity=0.366 Sum_probs=74.3
Q ss_pred CCCCCeEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceec
Q 025700 2 TMANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFH 81 (249)
Q Consensus 2 ~~~~~tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~~~ 81 (249)
..++++|||+|||.++|+++|+++|++||.|.. |+|+++. .++|||||+|.+.++|++||+.||+..|.
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~--------v~i~~~~---~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 73 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQ--------IRVGNTP---ETRGTAYVVYEDIFDAKNAVDHLSGFNVS 73 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEE--------EEEECST---TTTTCEEEEESSHHHHHHHHHHHTTCBSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEE--------EEEeeCC---CCCcEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 346789999999999999999999999999988 7787664 45899999999999999999999999999
Q ss_pred CeEEEEEecccCC
Q 025700 82 GNLIGVFIAESRG 94 (249)
Q Consensus 82 g~~i~V~~a~~~~ 94 (249)
|+.|.|.++.++.
T Consensus 74 g~~l~v~~a~~~~ 86 (115)
T 3lqv_A 74 NRYLVVLYYNANR 86 (115)
T ss_dssp SCBCEEEECCHHH
T ss_pred CeEEEEEEecCCh
Confidence 9999999998643
No 137
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.70 E-value=3.2e-17 Score=133.93 Aligned_cols=83 Identities=24% Similarity=0.368 Sum_probs=77.5
Q ss_pred CCCCeEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 025700 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (249)
Q Consensus 3 ~~~~tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~~~g 82 (249)
.++.+|||+|||.++|+++|+++|.+||.|.. |.|+.++ +++++|||||+|.+.++|++||+.|++..|.+
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~--------v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~G 156 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKK--------AAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDG 156 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSE--------EEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEE--------EEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECC
Confidence 34679999999999999999999999999988 8899998 89999999999999999999999999999999
Q ss_pred eEEEEEecccCC
Q 025700 83 NLIGVFIAESRG 94 (249)
Q Consensus 83 ~~i~V~~a~~~~ 94 (249)
+.|+|++|....
T Consensus 157 r~l~V~~a~~~~ 168 (177)
T 2f3j_A 157 RPMDIQLVASQI 168 (177)
T ss_dssp SBCEEEEESSGG
T ss_pred EEEEEEEecCCC
Confidence 999999987653
No 138
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.70 E-value=6.7e-18 Score=126.54 Aligned_cols=82 Identities=12% Similarity=0.184 Sum_probs=75.3
Q ss_pred CCCCeEEecCCCCCCCHHHHHHHHHhcCC---eeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCce
Q 025700 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGL---LKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKD 79 (249)
Q Consensus 3 ~~~~tI~V~nLp~~~te~dL~~~F~~~G~---i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~ 79 (249)
.+..+|||+|||+++|+++|+++|.+||. |.. |+|++++. ++++|||||+|.+.++|++||+ +++..
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~--------v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~ 78 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENG--------IHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMY 78 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTT--------EECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcce--------EEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcce
Confidence 45679999999999999999999999998 666 88999987 9999999999999999999999 99999
Q ss_pred ecCeEEEEEecccCC
Q 025700 80 FHGNLIGVFIAESRG 94 (249)
Q Consensus 80 ~~g~~i~V~~a~~~~ 94 (249)
|.++.|+|.++.++.
T Consensus 79 ~~gr~i~V~~a~~~~ 93 (107)
T 2lmi_A 79 MGQRYVEVYEINNED 93 (107)
T ss_dssp SSSSCCCCEECCHHH
T ss_pred eCCeEEEEEECCHHH
Confidence 999999999987654
No 139
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.70 E-value=7.2e-17 Score=128.63 Aligned_cols=84 Identities=23% Similarity=0.291 Sum_probs=79.3
Q ss_pred CCCeEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCe
Q 025700 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGN 83 (249)
Q Consensus 4 ~~~tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~~~g~ 83 (249)
++++|||+|||.++|+++|+++|++||.|.. |++++++.+++++|||||+|.++++|++|++.|++..+.++
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~--------v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~ 73 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINT--------CRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNK 73 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEE--------EECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeE--------EEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCc
Confidence 6789999999999999999999999999988 88999999999999999999999999999999999999999
Q ss_pred EEEEEecccCCC
Q 025700 84 LIGVFIAESRGK 95 (249)
Q Consensus 84 ~i~V~~a~~~~~ 95 (249)
.|.|.++.+...
T Consensus 74 ~l~v~~~~~~~~ 85 (168)
T 1b7f_A 74 RLKVSYARPGGE 85 (168)
T ss_dssp ECEEEECCCCSS
T ss_pred EEEEEecCCCcc
Confidence 999999886543
No 140
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=8.3e-17 Score=115.00 Aligned_cols=75 Identities=20% Similarity=0.181 Sum_probs=68.7
Q ss_pred CCCCeEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHh-CCceec
Q 025700 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWF-NNKDFH 81 (249)
Q Consensus 3 ~~~~tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l-~g~~~~ 81 (249)
.++.+|||+|||.++|+++|+++|.+||.|.. |++++ +++||||+|.+.++|++||+.| ++..+.
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~--------~~~~~------~kg~afV~f~~~~~A~~a~~~l~~~~~~~ 75 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFGEIRT--------ITVVQ------RQQCAFIQFATRQAAEVAAEKSFNKLIVN 75 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTSCEEE--------EEEEG------GGTEEEEEESSHHHHHHHHHTTTTTCEET
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCCCEeE--------EEEEC------CCCEEEEEECCHHHHHHHHHHhcCCeeEC
Confidence 45689999999999999999999999999988 77775 3689999999999999999988 999999
Q ss_pred CeEEEEEecc
Q 025700 82 GNLIGVFIAE 91 (249)
Q Consensus 82 g~~i~V~~a~ 91 (249)
|+.|+|++++
T Consensus 76 g~~l~v~~ak 85 (85)
T 2ytc_A 76 GRRLNVKWGR 85 (85)
T ss_dssp TEECCEEECC
T ss_pred CCEEEEEecC
Confidence 9999999874
No 141
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.70 E-value=2.5e-17 Score=121.94 Aligned_cols=82 Identities=23% Similarity=0.320 Sum_probs=75.2
Q ss_pred CCCeEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCe
Q 025700 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGN 83 (249)
Q Consensus 4 ~~~tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~~~g~ 83 (249)
++.+|||+|||.++|+++|+++|++||.|.. |+|+.++ +++++|||||+|.+.++|++||+ ++..|.|+
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~ 76 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKE--------VKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGK 76 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEE--------EEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEE--------EEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCE
Confidence 4579999999999999999999999999988 8899998 89999999999999999999998 89999999
Q ss_pred EEEEEecccCCCC
Q 025700 84 LIGVFIAESRGKD 96 (249)
Q Consensus 84 ~i~V~~a~~~~~~ 96 (249)
.|.|..+.++...
T Consensus 77 ~l~v~~a~~~~~~ 89 (102)
T 2xs2_A 77 KLKLGPAIRKQNL 89 (102)
T ss_dssp ECEEEEEEECC--
T ss_pred EEEEEECCcCcch
Confidence 9999998876543
No 142
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=5.3e-17 Score=122.96 Aligned_cols=81 Identities=23% Similarity=0.270 Sum_probs=70.7
Q ss_pred CCCCCeEEecCCCCC-CCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhC--Cc
Q 025700 2 TMANGSVYVCNLPHG-TDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFN--NK 78 (249)
Q Consensus 2 ~~~~~tI~V~nLp~~-~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~--g~ 78 (249)
..++.+|||+|||++ +|+++|+++|++||.|.. |+|++ +|+||||+|+++++|++||+.|+ +.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~--------v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~ 87 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKN--------YILMR------MKSQAFIEMETREDAMAMVDHCLKKAL 87 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSE--------EEEET------TTTEEEEECSSHHHHHHHHHHHHHSCC
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEE--------EEEec------CCCEEEEEECCHHHHHHHHHHhccCCc
Confidence 356889999999998 999999999999999988 76763 46899999999999999999885 45
Q ss_pred eecCeEEEEEecccCCCC
Q 025700 79 DFHGNLIGVFIAESRGKD 96 (249)
Q Consensus 79 ~~~g~~i~V~~a~~~~~~ 96 (249)
.|.|++|.|.+++.+...
T Consensus 88 ~l~Gr~l~V~~a~~~~~~ 105 (112)
T 1x4f_A 88 WFQGRCVKVDLSEKYKKL 105 (112)
T ss_dssp CSSSSCCEEEEECSCSSS
T ss_pred eECCEEEEEEECcccccc
Confidence 699999999999866543
No 143
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.69 E-value=1.7e-16 Score=125.86 Aligned_cols=82 Identities=17% Similarity=0.231 Sum_probs=77.5
Q ss_pred CCCCeEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 025700 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (249)
Q Consensus 3 ~~~~tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~~~g 82 (249)
.++.+|||+|||.++|+++|+++|++||.|.. |.++.++.++.++|||||+|.++++|++|++.|++..|.|
T Consensus 85 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~--------~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 156 (166)
T 3md3_A 85 DDTFNLFVGDLNVNVDDETLRNAFKDFPSYLS--------GHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNG 156 (166)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHTTSTTEEE--------EEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETT
T ss_pred CCCceEEECCCCCCCCHHHHHHHHhccCCeeE--------EEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCC
Confidence 35679999999999999999999999999998 8899999999999999999999999999999999999999
Q ss_pred eEEEEEeccc
Q 025700 83 NLIGVFIAES 92 (249)
Q Consensus 83 ~~i~V~~a~~ 92 (249)
+.|+|.+|++
T Consensus 157 ~~i~v~~a~~ 166 (166)
T 3md3_A 157 RPLRINWAAK 166 (166)
T ss_dssp EECEEEESCC
T ss_pred cEEEEEecCC
Confidence 9999999863
No 144
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=8.3e-17 Score=117.72 Aligned_cols=79 Identities=16% Similarity=0.180 Sum_probs=72.0
Q ss_pred CCCeEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeE-EEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 025700 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKV-WLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (249)
Q Consensus 4 ~~~tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V-~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~~~g 82 (249)
.+.+|||+|||+++|+++|+++|.+||.|.. | .|+.++.++. |||+|.+.++|++||+.|++..|.|
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~--------~~~i~~~~~~~~----afV~f~~~~~a~~Ai~~l~g~~~~g 81 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVES--------CEQVNTDSETAV----VNVTYSSKDQARQALDKLNGFQLEN 81 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEE--------EEEECCSSSSEE----EEEEESSHHHHHHHHHHHTTCBCSS
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEE--------EEEeecCCCCCE----EEEEECCHHHHHHHHHHhCCCEECC
Confidence 4689999999999999999999999999988 7 4788776543 9999999999999999999999999
Q ss_pred eEEEEEecccCC
Q 025700 83 NLIGVFIAESRG 94 (249)
Q Consensus 83 ~~i~V~~a~~~~ 94 (249)
+.|+|+++.++.
T Consensus 82 ~~l~V~~a~~~~ 93 (96)
T 2e44_A 82 FTLKVAYIPDEM 93 (96)
T ss_dssp CBCEEEECCCCC
T ss_pred cEEEEEEcCccc
Confidence 999999998874
No 145
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.69 E-value=6.8e-17 Score=122.69 Aligned_cols=75 Identities=24% Similarity=0.295 Sum_probs=64.6
Q ss_pred CCCeEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCe
Q 025700 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGN 83 (249)
Q Consensus 4 ~~~tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~~~g~ 83 (249)
...+|||+|||+++|+++|+++|.+||.|.. |.|+.+ +||||+|+++++|++||+.||+..|+|+
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~--------~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr 79 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCY--------ADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSH 79 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEE--------EEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCT
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEE--------EEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence 4579999999999999999999999999988 667655 7999999999999999999999999998
Q ss_pred E-----EEEEecccC
Q 025700 84 L-----IGVFIAESR 93 (249)
Q Consensus 84 ~-----i~V~~a~~~ 93 (249)
. |+|..+.++
T Consensus 80 ~~~~~~i~v~~~~~~ 94 (115)
T 3beg_B 80 EGETAYIRVKVDGPR 94 (115)
T ss_dssp TSCCCBCEEEECC--
T ss_pred EeeeEEEEeccCCCC
Confidence 8 666665543
No 146
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.68 E-value=5e-17 Score=127.71 Aligned_cols=90 Identities=23% Similarity=0.213 Sum_probs=73.6
Q ss_pred CCCCeEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 025700 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (249)
Q Consensus 3 ~~~~tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~~~g 82 (249)
.++.+|||+|||.++|+++|+++|.+||.|..+. ...+.-++...|++++|||||+|.+.++|++||+.||+..|.|
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~---~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g 119 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSET---QRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFG 119 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHH---HHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccccc---ccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCC
Confidence 4678999999999999999999999999887520 0000012223468899999999999999999999999999999
Q ss_pred eEEEEEecccCCC
Q 025700 83 NLIGVFIAESRGK 95 (249)
Q Consensus 83 ~~i~V~~a~~~~~ 95 (249)
+.|.|.++++...
T Consensus 120 ~~l~V~~a~~~~~ 132 (143)
T 3egn_A 120 KPMVVQFARSARP 132 (143)
T ss_dssp EECEEEECCCSCC
T ss_pred cEEEEEECCCCCC
Confidence 9999999987544
No 147
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.68 E-value=1.4e-16 Score=115.04 Aligned_cols=77 Identities=21% Similarity=0.270 Sum_probs=69.5
Q ss_pred CCCCeEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 025700 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (249)
Q Consensus 3 ~~~~tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~~~g 82 (249)
..+.+|||+|||+++|+++|+++|.+| .|.. |+|. +++|||||+|.++++|++||+.|++..+.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~--------~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g 67 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKY--------CYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRG 67 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCC--------EEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEE--------EEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECC
Confidence 457899999999999999999999999 8877 5563 578999999999999999999999999999
Q ss_pred eEEEEEecccCC
Q 025700 83 NLIGVFIAESRG 94 (249)
Q Consensus 83 ~~i~V~~a~~~~ 94 (249)
+.|+|+++....
T Consensus 68 ~~l~V~~a~~~~ 79 (88)
T 1wg1_A 68 KDLIVQLQPTDA 79 (88)
T ss_dssp EEEEEEECCCCC
T ss_pred cEEEEEEcCCCc
Confidence 999999987544
No 148
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.68 E-value=2.5e-16 Score=130.61 Aligned_cols=85 Identities=27% Similarity=0.331 Sum_probs=80.0
Q ss_pred CCCeEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCe
Q 025700 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGN 83 (249)
Q Consensus 4 ~~~tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~~~g~ 83 (249)
+..+|||.|||.++|+++|+++|++||.|.. |+|++++.+++++|||||+|.+.++|++||+.|++..|.|+
T Consensus 124 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~--------v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~ 195 (216)
T 2qfj_A 124 AFNRIYVASVHQDLSDDDIKSVFEAFGKIKS--------ATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQ 195 (216)
T ss_dssp TSCEEEEECCCTTCCHHHHHHHHTTSSCEEE--------EEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSS
T ss_pred CCcEEEEeCCCCcCCHHHHHHHHhccCCeeE--------EEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCc
Confidence 4679999999999999999999999999998 88999999999999999999999999999999999999999
Q ss_pred EEEEEecccCCCC
Q 025700 84 LIGVFIAESRGKD 96 (249)
Q Consensus 84 ~i~V~~a~~~~~~ 96 (249)
.|+|.++.++...
T Consensus 196 ~i~V~~a~~~~~~ 208 (216)
T 2qfj_A 196 YLRVGKAVTPPMP 208 (216)
T ss_dssp BCEEEECSSCSST
T ss_pred EEEEEEecCCCCC
Confidence 9999999877543
No 149
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.68 E-value=3.2e-17 Score=126.75 Aligned_cols=81 Identities=20% Similarity=0.315 Sum_probs=72.1
Q ss_pred CCCCeEEecCCCCCCCHHHHHHHHHhcCCee--ecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcee
Q 025700 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLK--KDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDF 80 (249)
Q Consensus 3 ~~~~tI~V~nLp~~~te~dL~~~F~~~G~i~--~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~~ 80 (249)
.+..+|||+|||+++|+++|+++|++| .|. . |+|++++. ++++|||||+|.++++|++||+. ++..|
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~--------v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~-~~~~l 108 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNG--------ITLPVDPE-GKITGEAFVQFASQELAEKALGK-HKERI 108 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEE--------EECCCCSS-SSSCSEEEEEESSTTHHHHHHTT-TTCCB
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeE--------EEEEECCC-CCCceEEEEEECCHHHHHHHHHH-CCCEE
Confidence 356899999999999999999999999 555 4 88999987 99999999999999999999984 77899
Q ss_pred cCeEEEEEecccCC
Q 025700 81 HGNLIGVFIAESRG 94 (249)
Q Consensus 81 ~g~~i~V~~a~~~~ 94 (249)
.++.|+|.++.+++
T Consensus 109 ~gR~I~V~~a~~~e 122 (126)
T 2hgm_A 109 GHRYIEVFKSSQEE 122 (126)
T ss_dssp TTBCCCCEEECHHH
T ss_pred CCEEEEEEECCHHH
Confidence 99999999886543
No 150
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.68 E-value=2.1e-16 Score=129.07 Aligned_cols=85 Identities=21% Similarity=0.288 Sum_probs=75.1
Q ss_pred CCCeEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCe
Q 025700 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGN 83 (249)
Q Consensus 4 ~~~tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~~~g~ 83 (249)
+..+|||+|||.++|+++|+++|++||.|.. |+|+.++.+++++|||||+|.++++|++||+. ++..|.|+
T Consensus 103 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~ 173 (196)
T 1l3k_A 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEV--------IEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGH 173 (196)
T ss_dssp CCSEEEEECCTTTCCHHHHHHHHTTTSCEEE--------EEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTE
T ss_pred CcceEEEeCCCCCCCHHHHHHHHhcCCCeEE--------EEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCE
Confidence 4579999999999999999999999999998 88999999999999999999999999999985 78999999
Q ss_pred EEEEEecccCCCCC
Q 025700 84 LIGVFIAESRGKDD 97 (249)
Q Consensus 84 ~i~V~~a~~~~~~~ 97 (249)
.|.|.++.++....
T Consensus 174 ~i~v~~a~~k~~~~ 187 (196)
T 1l3k_A 174 NCEVRKALSKQEMA 187 (196)
T ss_dssp ECEEEECC------
T ss_pred EEEEEecCChhHhc
Confidence 99999999876643
No 151
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.67 E-value=1.2e-16 Score=126.46 Aligned_cols=79 Identities=30% Similarity=0.459 Sum_probs=72.6
Q ss_pred CCCCeEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 025700 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (249)
Q Consensus 3 ~~~~tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~~~g 82 (249)
.+..+|||+|||+++|+++|+++|++||.|.. |+|+++ ++|||||+|.+.++|++||+.|++..|.|
T Consensus 71 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~--------v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g 137 (150)
T 2i2y_A 71 PLDCKVYVGNLGNNGNKTELERAFGYYGPLRS--------VWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCG 137 (150)
T ss_dssp TTSCEEEEESCCSCCSCHHHHHHHHHHSCEEE--------EEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEE--------EEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 35689999999999999999999999999988 778765 57899999999999999999999999999
Q ss_pred eEEEEEecccCC
Q 025700 83 NLIGVFIAESRG 94 (249)
Q Consensus 83 ~~i~V~~a~~~~ 94 (249)
+.|+|++++++.
T Consensus 138 ~~l~v~~a~~~~ 149 (150)
T 2i2y_A 138 CRVRVELSNGEK 149 (150)
T ss_dssp SCCEEEECCCCC
T ss_pred eEEEEEEcCCCC
Confidence 999999988763
No 152
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=6.5e-16 Score=113.39 Aligned_cols=78 Identities=22% Similarity=0.195 Sum_probs=69.8
Q ss_pred CCCCeEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 025700 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (249)
Q Consensus 3 ~~~~tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~~~g 82 (249)
.++.+|||+|| ++|+++|+++|.+||.|.. |+|. ++++||||+|.+.++|++||+.|++..|.+
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~--------v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g 76 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIID--------LSMD------PPRNCAFVTYEKMESADQAVAELNGTQVES 76 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEE--------EEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETT
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEE--------EEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECC
Confidence 35689999996 8999999999999999987 5563 467899999999999999999999999999
Q ss_pred eEEEEEecccCCCC
Q 025700 83 NLIGVFIAESRGKD 96 (249)
Q Consensus 83 ~~i~V~~a~~~~~~ 96 (249)
+.|+|.+++++...
T Consensus 77 ~~l~v~~a~~~~~~ 90 (97)
T 1x5p_A 77 VQLKVNIARKQPML 90 (97)
T ss_dssp EEEEEECCSSCCCC
T ss_pred eEEEEEECCCCCCC
Confidence 99999999876553
No 153
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.67 E-value=3.4e-16 Score=128.12 Aligned_cols=85 Identities=24% Similarity=0.263 Sum_probs=80.0
Q ss_pred CCCCeEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 025700 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (249)
Q Consensus 3 ~~~~tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~~~g 82 (249)
.+..+|||+|||.++|+++|+++|.+||.|.. |++++++.++.++|||||+|.++++|++||+.|++..|.|
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~--------~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 183 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKA--------FNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGD 183 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEE--------EEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccE--------EEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 45689999999999999999999999999988 8899999899999999999999999999999999999999
Q ss_pred eEEEEEecccCCC
Q 025700 83 NLIGVFIAESRGK 95 (249)
Q Consensus 83 ~~i~V~~a~~~~~ 95 (249)
+.|+|.++.++.+
T Consensus 184 ~~l~v~~a~~~~~ 196 (198)
T 2yh0_A 184 KKLLVQRASVGAK 196 (198)
T ss_dssp EECEEEESCCCCC
T ss_pred EEEEEEECCCCCC
Confidence 9999999987654
No 154
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=9.3e-17 Score=121.23 Aligned_cols=77 Identities=25% Similarity=0.223 Sum_probs=69.3
Q ss_pred CCCeEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCe
Q 025700 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGN 83 (249)
Q Consensus 4 ~~~tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~~~g~ 83 (249)
++++|||+|||.++|+++|+++|.+||.|.. |.|+. +++||||+|.+.++|++||+.||+..|.++
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~--------v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 74 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGR--------VLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHV 74 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEE--------EECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEE--------EEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCe
Confidence 4579999999999999999999999999987 55543 568999999999999999999999999999
Q ss_pred EEEEEecccCC
Q 025700 84 LIGVFIAESRG 94 (249)
Q Consensus 84 ~i~V~~a~~~~ 94 (249)
.|.|+++....
T Consensus 75 ~l~V~~a~~~~ 85 (111)
T 1whx_A 75 PLYLEWAPIGV 85 (111)
T ss_dssp BCEEEEEETTT
T ss_pred EEEEEECCCCc
Confidence 99999987643
No 155
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.66 E-value=2.1e-16 Score=121.54 Aligned_cols=78 Identities=14% Similarity=0.132 Sum_probs=70.7
Q ss_pred CeEEecCC----CCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCC----HHH----HHHHHH
Q 025700 6 GSVYVCNL----PHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYED----PHA----ALAAVE 73 (249)
Q Consensus 6 ~tI~V~nL----p~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s----~~~----A~~Ai~ 73 (249)
.+|||+|| |+.+++++|+++|++||.|.. +.++.|+.|+.++||+||+|.+ +++ |.+|+.
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~--------~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~ 74 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISH--------FEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVR 74 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSE--------EEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHH
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEE--------EEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHH
Confidence 68999999 999999999999999999999 8899999999999999999996 433 788888
Q ss_pred --HhCCceecCeEEEEEecc
Q 025700 74 --WFNNKDFHGNLIGVFIAE 91 (249)
Q Consensus 74 --~l~g~~~~g~~i~V~~a~ 91 (249)
.+++..|.|++|+|.+.+
T Consensus 75 ~~~lng~~I~Gr~irV~ln~ 94 (136)
T 2j8a_A 75 KHESSGCFIMGFKFEVILNK 94 (136)
T ss_dssp HTTTTCEEETTEEEEEEECC
T ss_pred HhhhcCCeecCcEEEEEECc
Confidence 789999999999999854
No 156
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.66 E-value=4.4e-16 Score=124.60 Aligned_cols=79 Identities=24% Similarity=0.284 Sum_probs=75.6
Q ss_pred CCeEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeE
Q 025700 5 NGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGNL 84 (249)
Q Consensus 5 ~~tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~~~g~~ 84 (249)
..+|||+|||.++|+++|+++|++||.|.. |++++++.+++++|||||+|.++++|++|++.|++..|.|+.
T Consensus 94 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~--------v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 165 (172)
T 2g4b_A 94 AHKLFIGGLPNYLNDDQVKELLTSFGPLKA--------FNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKK 165 (172)
T ss_dssp TTCEEEECCCTTCCHHHHHHHHHTTSCEEE--------EEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEE
T ss_pred CCEEEEEcCCCcCCHHHHHHHHHhcCCceE--------EEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeE
Confidence 589999999999999999999999999988 889999989999999999999999999999999999999999
Q ss_pred EEEEecc
Q 025700 85 IGVFIAE 91 (249)
Q Consensus 85 i~V~~a~ 91 (249)
|.|++|.
T Consensus 166 l~V~~As 172 (172)
T 2g4b_A 166 LLVQRAS 172 (172)
T ss_dssp CEEEECC
T ss_pred EEEEeCC
Confidence 9999873
No 157
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=2.7e-16 Score=119.34 Aligned_cols=81 Identities=17% Similarity=0.157 Sum_probs=70.2
Q ss_pred CCCCCeEEe--cCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCce
Q 025700 2 TMANGSVYV--CNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKD 79 (249)
Q Consensus 2 ~~~~~tI~V--~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~ 79 (249)
..++.+||| +||+.++|+++|+++|++||.|.. |.|+. .||||||+|+++++|++|++.||+.+
T Consensus 22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~--------v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~ 87 (114)
T 2cq2_A 22 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDA--------LLMPP------NKPYSFARYRTTEESKRAYVTLNGKE 87 (114)
T ss_dssp SSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEE--------EECCT------TCSCEEEEESSHHHHHHHHHHTTTCE
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEE--------EEEeC------CCCEEEEEECCHHHHHHHHHHhCCCE
Confidence 456789999 779999999999999999999987 55542 36899999999999999999999998
Q ss_pred e-----cCeEEEEEecccCCCC
Q 025700 80 F-----HGNLIGVFIAESRGKD 96 (249)
Q Consensus 80 ~-----~g~~i~V~~a~~~~~~ 96 (249)
| .+++|.|.++...+..
T Consensus 88 ~~~~lg~g~~l~v~~a~~~p~~ 109 (114)
T 2cq2_A 88 VVDDLGQKITLYLNFVEKVQWS 109 (114)
T ss_dssp EECTTSCEEECEEEEESCCCCS
T ss_pred EccccCCCcEEEEEecccCccc
Confidence 8 6889999998865543
No 158
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.66 E-value=4.5e-16 Score=127.16 Aligned_cols=83 Identities=23% Similarity=0.270 Sum_probs=75.6
Q ss_pred CCCeEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCe
Q 025700 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGN 83 (249)
Q Consensus 4 ~~~tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~~~g~ 83 (249)
++.+|||+|||.++|+++|+++|++||.|.. |+|++++.|++++|||||+|.++++|++||+. ++..|.++
T Consensus 12 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~--------v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~ 82 (196)
T 1l3k_A 12 QLRKLFIGGLSFETTDESLRSHFEQWGTLTD--------CVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGR 82 (196)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHGGGSCEEE--------EEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEE--------EEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCE
Confidence 4679999999999999999999999999998 88999999999999999999999999999985 88999999
Q ss_pred EEEEEecccCCC
Q 025700 84 LIGVFIAESRGK 95 (249)
Q Consensus 84 ~i~V~~a~~~~~ 95 (249)
.|.|.++.++..
T Consensus 83 ~l~v~~~~~~~~ 94 (196)
T 1l3k_A 83 VVEPKRAVSRED 94 (196)
T ss_dssp ECEEEECCC---
T ss_pred EeeeecccCccc
Confidence 999999876543
No 159
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.65 E-value=1.5e-16 Score=126.73 Aligned_cols=80 Identities=25% Similarity=0.346 Sum_probs=76.1
Q ss_pred CCeEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeE
Q 025700 5 NGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGNL 84 (249)
Q Consensus 5 ~~tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~~~g~~ 84 (249)
+.+|||+|||.++|+++|+++|++||.|.. |+++.++.++.++|||||+|.++++|++|++ +++..|.|+.
T Consensus 87 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~--------~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~ 157 (167)
T 2cjk_A 87 TGKIFVGGIGPDVRPKEFEEFFSQWGTIID--------AQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRK 157 (167)
T ss_dssp CEEEEEEEECTTCCHHHHHHHHHTTSCCSE--------EECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSC
T ss_pred CCeEEECCCCCCCCHHHHHHHHHhCccEEE--------EEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeE
Confidence 568999999999999999999999999988 8899999899999999999999999999998 8999999999
Q ss_pred EEEEecccC
Q 025700 85 IGVFIAESR 93 (249)
Q Consensus 85 i~V~~a~~~ 93 (249)
|+|.+|.++
T Consensus 158 i~V~~a~pk 166 (167)
T 2cjk_A 158 IEIKRAEPR 166 (167)
T ss_dssp EEEEECCCC
T ss_pred EEEeecCCC
Confidence 999999876
No 160
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.65 E-value=1e-15 Score=118.66 Aligned_cols=76 Identities=18% Similarity=0.209 Sum_probs=68.5
Q ss_pred eEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccE-EEEEeCCHHHHHHHHHHhCCceecC--e
Q 025700 7 SVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGD-ATVTYEDPHAALAAVEWFNNKDFHG--N 83 (249)
Q Consensus 7 tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~-aFV~F~s~~~A~~Ai~~l~g~~~~g--~ 83 (249)
.|||+||++.+|+++|+++|++||.|.. |+|+.+ .++| |||+|.+.++|++|++.|||..|.+ .
T Consensus 30 ~I~V~NL~~~vte~~L~~lFs~yG~V~~--------V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~ 96 (130)
T 3zzy_A 30 RIIVENLFYPVTLDVLHQIFSKFGTVLK--------IITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACC 96 (130)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTSSCEEE--------EEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEE
T ss_pred EEEECCCCCCCCHHHHHHHHhCcCCEEE--------EEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCc
Confidence 5779999999999999999999999998 767654 3678 9999999999999999999999998 8
Q ss_pred EEEEEecccCCC
Q 025700 84 LIGVFIAESRGK 95 (249)
Q Consensus 84 ~i~V~~a~~~~~ 95 (249)
.|+|++++++..
T Consensus 97 ~LrI~~ak~~~l 108 (130)
T 3zzy_A 97 TLRIDFSKLTSL 108 (130)
T ss_dssp EEEEEECSCSSC
T ss_pred EEEEEecCCCce
Confidence 999999987643
No 161
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=1.9e-16 Score=114.09 Aligned_cols=80 Identities=21% Similarity=0.290 Sum_probs=66.6
Q ss_pred CCCCCeEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceec
Q 025700 2 TMANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFH 81 (249)
Q Consensus 2 ~~~~~tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~~~ 81 (249)
+.++++|||+|||.++|+++|+++|++||.|.. |+|+++ ++|||||+|.++++|++|+.. ...+.
T Consensus 2 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~--------v~i~~~-----~~g~afV~f~~~~~a~~~~~~--~~~~~ 66 (88)
T 1wf0_A 2 SSGSSGVFVGRCTGDMTEDELREFFSQYGDVMD--------VFIPKP-----FRAFAFVTFADDQIAQSLCGE--DLIIK 66 (88)
T ss_dssp CSCCCEEEEESCCSSSCHHHHHHHSTTTSCCCE--------EECCSS-----CCSCCEEECSCHHHHHHTTTC--EEEET
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeE--------EEEecC-----CCCEEEEEECCHHHHHHHhcC--CceeC
Confidence 357899999999999999999999999999988 667654 689999999999999865431 34568
Q ss_pred CeEEEEEecccCCCC
Q 025700 82 GNLIGVFIAESRGKD 96 (249)
Q Consensus 82 g~~i~V~~a~~~~~~ 96 (249)
++.|.|.++.++...
T Consensus 67 g~~l~v~~a~~~~~~ 81 (88)
T 1wf0_A 67 GISVHISNAEPKHNS 81 (88)
T ss_dssp TEEEEEECCCCCCCC
T ss_pred CEEEEEEecCCCCCC
Confidence 999999998876553
No 162
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.64 E-value=7.2e-16 Score=123.98 Aligned_cols=77 Identities=18% Similarity=0.208 Sum_probs=69.2
Q ss_pred CeEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC--e
Q 025700 6 GSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG--N 83 (249)
Q Consensus 6 ~tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~~~g--~ 83 (249)
.+|||+||++.+|+++|+++|++||.|.. |+|+.++ +++||||+|++.++|++|++.|++..|.+ +
T Consensus 47 l~l~VgNL~~~vted~L~~~Fs~fG~V~~--------V~i~~k~----~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~ 114 (164)
T 1sjr_A 47 LRIIVENLFYPVTLDVLHQIFSKFGTVLK--------IITFTKN----NQFQALLQYADPVSAQHAKLSLDGQNIYNACC 114 (164)
T ss_dssp EEEEECSCCSCCCHHHHHHHHHHHSCEEE--------EEEEESS----SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCS
T ss_pred EEEEEeCcCCCCCHHHHHHHHHhcCCEEE--------EEEEeCC----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCc
Confidence 35899999999999999999999999998 7776432 57899999999999999999999999976 9
Q ss_pred EEEEEecccCC
Q 025700 84 LIGVFIAESRG 94 (249)
Q Consensus 84 ~i~V~~a~~~~ 94 (249)
.|+|++++++.
T Consensus 115 ~L~V~~Ak~~~ 125 (164)
T 1sjr_A 115 TLRIDFSKLTS 125 (164)
T ss_dssp CEEEEECSSSS
T ss_pred EEEEEEecCCc
Confidence 99999999764
No 163
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.64 E-value=2.1e-16 Score=132.10 Aligned_cols=82 Identities=26% Similarity=0.290 Sum_probs=75.1
Q ss_pred CCCeEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCe
Q 025700 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGN 83 (249)
Q Consensus 4 ~~~tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~~~g~ 83 (249)
...+|||+|||.++|+++|+++|.+||.|.. |+|++++ +.++|||||+|.++++|++||+.||+..|.|+
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~--------~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~ 171 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSAFGNILS--------CKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDR 171 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGGGSCEEE--------EEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred ccccceECCcccccHHHHHHHHHhhcCCeEE--------EEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCCCEECCE
Confidence 4578999999999999999999999999998 7888886 45799999999999999999999999999999
Q ss_pred EEEEEecccCCC
Q 025700 84 LIGVFIAESRGK 95 (249)
Q Consensus 84 ~i~V~~a~~~~~ 95 (249)
.|.|.+++++..
T Consensus 172 ~i~V~~a~~~~~ 183 (213)
T 4f02_A 172 KVFVGRFKSRKE 183 (213)
T ss_dssp ECEEEECCCHHH
T ss_pred EEEEEEcCCCcc
Confidence 999999987543
No 164
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=6.5e-16 Score=112.58 Aligned_cols=77 Identities=23% Similarity=0.285 Sum_probs=67.7
Q ss_pred CCCCCe-EEecCCCCCCCHHH----HHHHHHhcC-CeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHh
Q 025700 2 TMANGS-VYVCNLPHGTDEDM----LAEYFGTIG-LLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWF 75 (249)
Q Consensus 2 ~~~~~t-I~V~nLp~~~te~d----L~~~F~~~G-~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l 75 (249)
.+|+.| |||.|||..+++++ |+++|.+|| .|.. | |+ |+|||+|.+.++|++|++.|
T Consensus 5 ~~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~----------V-----tg---G~AfV~F~~~esA~~A~~~l 66 (96)
T 2diu_A 5 SSGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLS----------I-----TG---CSAILRFINQDSAERAQKRM 66 (96)
T ss_dssp CCCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEE----------C-----CT---TCEEEEESSHHHHHHHHHHH
T ss_pred CCCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEE----------E-----ec---CEEEEEECCHHHHHHHHHHh
Confidence 456777 99999999999988 558999994 9876 3 33 89999999999999999999
Q ss_pred CCceecCeEEEEEecccCCCC
Q 025700 76 NNKDFHGNLIGVFIAESRGKD 96 (249)
Q Consensus 76 ~g~~~~g~~i~V~~a~~~~~~ 96 (249)
++..|.|+.|+|++|+.+...
T Consensus 67 ~G~~l~gr~i~v~~A~~~sd~ 87 (96)
T 2diu_A 67 ENEDVFGNRIIVSFTPKNREL 87 (96)
T ss_dssp TTCCSSSSCCEEESSCCSCCC
T ss_pred cCCccCCceEEEEecCCCcce
Confidence 999999999999999977654
No 165
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.63 E-value=1.1e-15 Score=122.43 Aligned_cols=85 Identities=26% Similarity=0.294 Sum_probs=76.5
Q ss_pred CCCCeEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCC--CcccEEEEEeCCHHHHHHHHHHhCCcee
Q 025700 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTN--EYKGDATVTYEDPHAALAAVEWFNNKDF 80 (249)
Q Consensus 3 ~~~~tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg--~~rG~aFV~F~s~~~A~~Ai~~l~g~~~ 80 (249)
+++.+|||+|||.++|+++|+++|++||.|.. |+|++++.++ +++|||||+|.++++|++||+.|++..+
T Consensus 1 s~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~--------v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~ 72 (175)
T 3nmr_A 1 SDAIKMFVGQVPRTWSEKDLRELFEQYGAVYE--------INVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKV 72 (175)
T ss_dssp CCCEEEEEESCCTTCCHHHHHHHHHTTSCEEE--------EEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCC
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhCCCEEE--------EEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEE
Confidence 46789999999999999999999999999998 8899999887 8999999999999999999999999877
Q ss_pred c---CeEEEEEecccCCC
Q 025700 81 H---GNLIGVFIAESRGK 95 (249)
Q Consensus 81 ~---g~~i~V~~a~~~~~ 95 (249)
. .+.|.+.++.+...
T Consensus 73 ~~~~~~~~~~~~~~~~~~ 90 (175)
T 3nmr_A 73 LPGMHHPIQMKPADSEKN 90 (175)
T ss_dssp CTTCSSCCEEEECGGGCC
T ss_pred ccCCccceEEcccccccc
Confidence 6 57788888766543
No 166
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.63 E-value=9.7e-16 Score=111.10 Aligned_cols=77 Identities=19% Similarity=0.326 Sum_probs=61.4
Q ss_pred CCCCCeEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCce--
Q 025700 2 TMANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKD-- 79 (249)
Q Consensus 2 ~~~~~tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~-- 79 (249)
..+..+|||+|||+++||++|+++|++||.|.. |+|+++ +||||||+|+++++|++ +++..
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~--------v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~ 70 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVD--------VFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLI 70 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEE--------EECCSS-----CCSEEEEEESCHHHHHH----HTTCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEE--------EEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcc
Confidence 356789999999999999999999999999988 667764 78999999999999984 44444
Q ss_pred ecCeEEEEEecccCCC
Q 025700 80 FHGNLIGVFIAESRGK 95 (249)
Q Consensus 80 ~~g~~i~V~~a~~~~~ 95 (249)
+.++.|.|.++.++..
T Consensus 71 ~~g~~v~v~~a~~k~~ 86 (89)
T 3d2w_A 71 IKGISVHISNAEPKHN 86 (89)
T ss_dssp ETTEEEEEEECC----
T ss_pred cCCEEEEEEEcCCCCc
Confidence 4599999999987653
No 167
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.63 E-value=1.6e-15 Score=113.49 Aligned_cols=83 Identities=16% Similarity=0.131 Sum_probs=74.0
Q ss_pred CCCCCeEEecCCCC-----CCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCC-CCcccEEEEEeCCHHHHHHHHHHh
Q 025700 2 TMANGSVYVCNLPH-----GTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTT-NEYKGDATVTYEDPHAALAAVEWF 75 (249)
Q Consensus 2 ~~~~~tI~V~nLp~-----~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~t-g~~rG~aFV~F~s~~~A~~Ai~~l 75 (249)
..++.+|+|.||.. +-++++|+++|++||.|.. |+|++++.+ ++++||+||+|.++++|++|++.|
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~--------v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~l 76 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGK--------CVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDL 76 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEE--------EEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHH
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEE--------EEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHH
Confidence 46889999999962 2378999999999999998 889888754 689999999999999999999999
Q ss_pred CCceecCeEEEEEeccc
Q 025700 76 NNKDFHGNLIGVFIAES 92 (249)
Q Consensus 76 ~g~~~~g~~i~V~~a~~ 92 (249)
|+..|.|+.|.|.++.+
T Consensus 77 nG~~~~Gr~i~v~~a~~ 93 (105)
T 2pe8_A 77 NGRYFGGRVVKACFYNL 93 (105)
T ss_dssp TTCEETTEECEEEECCH
T ss_pred CCCEECCcEEEEEEcCH
Confidence 99999999999999875
No 168
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.63 E-value=1.4e-15 Score=121.06 Aligned_cols=80 Identities=31% Similarity=0.439 Sum_probs=75.4
Q ss_pred CCCCeEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 025700 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (249)
Q Consensus 3 ~~~~tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~~~g 82 (249)
.++.+|||.|||.++|+++|+++|++||.|.. |++++++.+++++|||||+|.+.++|++|++.|++..+.+
T Consensus 87 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~--------~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 158 (168)
T 1b7f_A 87 IKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQ--------KNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEG 158 (168)
T ss_dssp TTTCEEEEESCCTTCCHHHHHHHHTSSSCEEE--------EEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTT
T ss_pred CCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEE--------EEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecC
Confidence 35689999999999999999999999999998 8899999899999999999999999999999999999987
Q ss_pred --eEEEEEec
Q 025700 83 --NLIGVFIA 90 (249)
Q Consensus 83 --~~i~V~~a 90 (249)
++|+|.+|
T Consensus 159 ~~~~l~V~~A 168 (168)
T 1b7f_A 159 GSQPLSVRLA 168 (168)
T ss_dssp CSSCCEEEEC
T ss_pred CCeEEEEEeC
Confidence 99999885
No 169
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.63 E-value=5.5e-16 Score=128.53 Aligned_cols=82 Identities=30% Similarity=0.295 Sum_probs=73.9
Q ss_pred CCCeEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCe
Q 025700 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGN 83 (249)
Q Consensus 4 ~~~tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~~~g~ 83 (249)
++.+|||+|||.++|+++|+++|++||.|.. |+|++++.++++++||||+|.++++|++||+.|++..|.++
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~--------v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~ 98 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKS--------IDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGR 98 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEE--------EEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-C
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEE--------EEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCe
Confidence 3579999999999999999999999999998 88999998999999999999999999999999999999999
Q ss_pred EEEEEecccC
Q 025700 84 LIGVFIAESR 93 (249)
Q Consensus 84 ~i~V~~a~~~ 93 (249)
.|.|.++...
T Consensus 99 ~l~v~~~~~~ 108 (216)
T 2qfj_A 99 NIKVGRPSNI 108 (216)
T ss_dssp CCEEECCSCC
T ss_pred eEEEecCCCc
Confidence 9999887654
No 170
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=6.4e-16 Score=116.95 Aligned_cols=77 Identities=22% Similarity=0.243 Sum_probs=64.6
Q ss_pred CCCCeEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCC---CCcccEEEEEeCCHHHHHHHHHHhCCce
Q 025700 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTT---NEYKGDATVTYEDPHAALAAVEWFNNKD 79 (249)
Q Consensus 3 ~~~~tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~t---g~~rG~aFV~F~s~~~A~~Ai~~l~g~~ 79 (249)
.++.+|||+|||+++|+++|+++|++||.|. +.++.++.| ++++|||||+|+++++|++||+.|+ .
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~---------~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~ 74 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV---------VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--E 74 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC---------EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--E
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE---------EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--h
Confidence 4678999999999999999999999999987 346777766 7999999999999999999999883 3
Q ss_pred ecCeEEEEEec
Q 025700 80 FHGNLIGVFIA 90 (249)
Q Consensus 80 ~~g~~i~V~~a 90 (249)
++|+.|.+..+
T Consensus 75 ~~G~~~~~~~~ 85 (114)
T 2dnl_A 75 EDGKLYLCVSS 85 (114)
T ss_dssp ETTEEEEEECC
T ss_pred cCCcEEEeccC
Confidence 55655555443
No 171
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.63 E-value=9.7e-16 Score=109.77 Aligned_cols=72 Identities=22% Similarity=0.381 Sum_probs=63.8
Q ss_pred CCCCeEEecCCCCCCCHHHHHHHHHhc----C-------CeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHH
Q 025700 3 MANGSVYVCNLPHGTDEDMLAEYFGTI----G-------LLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAA 71 (249)
Q Consensus 3 ~~~~tI~V~nLp~~~te~dL~~~F~~~----G-------~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~A 71 (249)
.++.+|||+|||.++|+++|+++|.+| | .|.. |++.++ ++||||+|.++++|++|
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~--------~~~~~~------kg~afV~f~~~~~a~~A 69 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLA--------VQINQD------KNFAFLEFRSVDETTQA 69 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEE--------EEECSS------SSEEEEEESSHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceE--------EEecCC------CcEEEEEcCCHHHHHHH
Confidence 467899999999999999999999999 7 6665 555533 68999999999999999
Q ss_pred HHHhCCceecCeEEEEEe
Q 025700 72 VEWFNNKDFHGNLIGVFI 89 (249)
Q Consensus 72 i~~l~g~~~~g~~i~V~~ 89 (249)
| .|++..|.|+.|+|+.
T Consensus 70 ~-~l~g~~~~g~~l~V~r 86 (87)
T 2hzc_A 70 M-AFDGIIFQGQSLKIRR 86 (87)
T ss_dssp G-GGTTCEETTEECEEEC
T ss_pred H-hcCCCEECCeEEEEeC
Confidence 9 8999999999999974
No 172
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.62 E-value=2.1e-15 Score=119.52 Aligned_cols=81 Identities=28% Similarity=0.391 Sum_probs=74.3
Q ss_pred CeEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeEE
Q 025700 6 GSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGNLI 85 (249)
Q Consensus 6 ~tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~~~g~~i 85 (249)
++|||+|||.++|+++|+++|++||.|.. |+|++++. ++++|||||+|.++++|++|++.|++..+.++.|
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~--------v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i 71 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIAN--------IKIMIDKN-NKNVNYAFVEYHQSHDANIALQTLNGKQIENNIV 71 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEE--------EEEECCCC--CCEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEE--------EEEEECCC-CCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCee
Confidence 58999999999999999999999999998 88988874 7799999999999999999999999999999999
Q ss_pred EEEecccCCC
Q 025700 86 GVFIAESRGK 95 (249)
Q Consensus 86 ~V~~a~~~~~ 95 (249)
.|.++.+...
T Consensus 72 ~v~~~~~~~~ 81 (166)
T 3md3_A 72 KINWAFQSQQ 81 (166)
T ss_dssp EEEECCCCCC
T ss_pred EEEEcCCCCC
Confidence 9999876543
No 173
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.62 E-value=1.8e-15 Score=126.19 Aligned_cols=79 Identities=22% Similarity=0.246 Sum_probs=72.2
Q ss_pred CCCCeEEecCCC-CCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceec
Q 025700 3 MANGSVYVCNLP-HGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFH 81 (249)
Q Consensus 3 ~~~~tI~V~nLp-~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~~~ 81 (249)
.++.+|||+||| ..+|+++|+++|++||.|.. |+|+++ .+|||||+|.++++|++||+.||+..|.
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~--------v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~ 68 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEK--------VKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMF 68 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTTTSCEEE--------EEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCeEE--------EEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 468899999999 89999999999999999998 778765 3789999999999999999999999999
Q ss_pred CeEEEEEecccCC
Q 025700 82 GNLIGVFIAESRG 94 (249)
Q Consensus 82 g~~i~V~~a~~~~ 94 (249)
|+.|+|.+++.+.
T Consensus 69 g~~l~v~~s~~~~ 81 (205)
T 3tyt_A 69 GQKMNVCVSKQPA 81 (205)
T ss_dssp TEECEEEECSCSC
T ss_pred CceEEEEEccCCc
Confidence 9999999987543
No 174
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.61 E-value=2.9e-15 Score=115.43 Aligned_cols=78 Identities=18% Similarity=0.210 Sum_probs=68.0
Q ss_pred CCCe--EEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccE-EEEEeCCHHHHHHHHHHhCCcee
Q 025700 4 ANGS--VYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGD-ATVTYEDPHAALAAVEWFNNKDF 80 (249)
Q Consensus 4 ~~~t--I~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~-aFV~F~s~~~A~~Ai~~l~g~~~ 80 (249)
++.+ |||+||++.+|+++|+++|++||.|.. |+|+. + .|| |||+|++.++|++||+.||+..|
T Consensus 22 ps~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~--------v~i~~-~-----~Gf~aFVef~~~~~A~~A~~~LnG~~i 87 (124)
T 2e5i_A 22 GNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQR--------IVIFK-R-----NGIQAMVEFESVLCAQKAKAALNGADI 87 (124)
T ss_dssp CCSEEEEEEESCCSCCCHHHHHHHHTTTSCEEE--------EEEEE-S-----SSEEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred CCcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEE--------EEEEe-C-----CCCEEEEEECCHHHHHHHHHHhCCCEe
Confidence 3444 679999999999999999999999998 76754 2 276 99999999999999999999999
Q ss_pred cC--eEEEEEecccCCC
Q 025700 81 HG--NLIGVFIAESRGK 95 (249)
Q Consensus 81 ~g--~~i~V~~a~~~~~ 95 (249)
.+ +.|+|++|+++..
T Consensus 88 ~g~~~~l~V~~Ak~~~l 104 (124)
T 2e5i_A 88 YAGCCTLKIEYARPTRL 104 (124)
T ss_dssp BTTBSEEEEECCSCSCC
T ss_pred cCCCeEEEEEEecCCcc
Confidence 87 6899999987753
No 175
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.61 E-value=2.6e-15 Score=119.05 Aligned_cols=79 Identities=22% Similarity=0.335 Sum_probs=73.4
Q ss_pred CCCeEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCe
Q 025700 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGN 83 (249)
Q Consensus 4 ~~~tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~~~g~ 83 (249)
+..+|||.|||.++|+++|+++|++||.|.. |+++.++.++.++|||||+|.+.++|++|++.|++..+.|+
T Consensus 87 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~--------~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 158 (167)
T 1fxl_A 87 RDANLYVSGLPKTMTQKELEQLFSQYGRIIT--------SRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGA 158 (167)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHHGGGSCEEE--------EEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTC
T ss_pred CCCcEEECCCCCcCCHHHHHHHHHhcCCEeE--------EEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCC
Confidence 4678999999999999999999999999998 88999998999999999999999999999999999999996
Q ss_pred E--EEEEec
Q 025700 84 L--IGVFIA 90 (249)
Q Consensus 84 ~--i~V~~a 90 (249)
. |+|.+|
T Consensus 159 ~~~i~v~~A 167 (167)
T 1fxl_A 159 TEPITVKFA 167 (167)
T ss_dssp SSCCEEEEC
T ss_pred ccceEEEeC
Confidence 5 777765
No 176
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.60 E-value=1.5e-15 Score=120.91 Aligned_cols=80 Identities=25% Similarity=0.398 Sum_probs=73.5
Q ss_pred CCCeEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCe
Q 025700 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGN 83 (249)
Q Consensus 4 ~~~tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~~~g~ 83 (249)
++.+|||+|||.++|+++|+++|++||.|.. |+|++++.|++++|||||+|.++++|++||+. ...+.|+
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~ 71 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTD--------LKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGK 71 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEE--------EECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEE--------EEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCe
Confidence 5789999999999999999999999999998 88999999999999999999999999999984 5688999
Q ss_pred EEEEEecccC
Q 025700 84 LIGVFIAESR 93 (249)
Q Consensus 84 ~i~V~~a~~~ 93 (249)
.|.|.++.++
T Consensus 72 ~i~v~~~~~~ 81 (167)
T 2cjk_A 72 VIDPKRAIPR 81 (167)
T ss_dssp ECCCEECCCH
T ss_pred Ecccccccch
Confidence 9999887653
No 177
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.60 E-value=3.6e-15 Score=119.29 Aligned_cols=79 Identities=15% Similarity=0.245 Sum_probs=72.6
Q ss_pred CCCeEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceec--
Q 025700 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFH-- 81 (249)
Q Consensus 4 ~~~tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~~~-- 81 (249)
+..+|||+|||.++|+++|+++|++||.|.. |++++++ +++++|||||+|.++++|++||+.||+..+.
T Consensus 94 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~--------v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g 164 (175)
T 3nmr_A 94 EDRKLFIGMISKKCTENDIRVMFSSFGQIEE--------CRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEG 164 (175)
T ss_dssp GGSEEEEESCCTTCCHHHHHHHHGGGSCEEE--------EEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTT
T ss_pred CCCeEEEcCCCCcCCHHHHHHHHHhCCCEEE--------EEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCC
Confidence 4679999999999999999999999999988 8898886 5899999999999999999999999998776
Q ss_pred -CeEEEEEecc
Q 025700 82 -GNLIGVFIAE 91 (249)
Q Consensus 82 -g~~i~V~~a~ 91 (249)
++.|.|.+|.
T Consensus 165 ~~~~l~V~~ad 175 (175)
T 3nmr_A 165 CSSPMVVKFAD 175 (175)
T ss_dssp CSSCCEEEECC
T ss_pred CCCCeEEEecC
Confidence 3999999874
No 178
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.60 E-value=4e-15 Score=114.09 Aligned_cols=78 Identities=22% Similarity=0.195 Sum_probs=69.4
Q ss_pred CCCCeEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 025700 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (249)
Q Consensus 3 ~~~~tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~~~g 82 (249)
.++.+|||+|| ++|+++|+++|++||.|.. |.|. +++|||||+|.+.++|++||+.|++..|.+
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~--------v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g 100 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIID--------LSMD------PPRNCAFVTYEKMESADQAVAELNGTQVES 100 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSC--------EEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSS
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEE--------EEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 35789999996 6999999999999999987 6664 467899999999999999999999999999
Q ss_pred eEEEEEecccCCCC
Q 025700 83 NLIGVFIAESRGKD 96 (249)
Q Consensus 83 ~~i~V~~a~~~~~~ 96 (249)
+.|+|.+++++...
T Consensus 101 ~~l~V~~a~~~~~~ 114 (121)
T 2bz2_A 101 VQLKVNIARKQPML 114 (121)
T ss_dssp CBCEEEECCSSCC-
T ss_pred eEEEEEEeCCCCCC
Confidence 99999999877543
No 179
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.58 E-value=3.4e-15 Score=120.01 Aligned_cols=77 Identities=18% Similarity=0.243 Sum_probs=70.8
Q ss_pred CCCeEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCe
Q 025700 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGN 83 (249)
Q Consensus 4 ~~~tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~~~g~ 83 (249)
+..+|||+|||.++|+++|+++|++||.|.. + ..++.++|||||+|.+.++|++||+.|++..|.|+
T Consensus 98 ~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~-----------~--~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 164 (175)
T 1fje_B 98 AARTLLAKNLSFNITEDELKEVFEDALEIRL-----------V--SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGR 164 (175)
T ss_dssp GGGEEEEESCCSSCCHHHHHHHCTTCSEEEE-----------E--CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTE
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhcCeEEE-----------e--cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCe
Confidence 4579999999999999999999999997754 3 56789999999999999999999999999999999
Q ss_pred EEEEEecccC
Q 025700 84 LIGVFIAESR 93 (249)
Q Consensus 84 ~i~V~~a~~~ 93 (249)
.|+|+++.++
T Consensus 165 ~i~v~~a~~k 174 (175)
T 1fje_B 165 SVSLYYTGEK 174 (175)
T ss_dssp EEEEEECSSC
T ss_pred EEEEEecCCC
Confidence 9999999876
No 180
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.57 E-value=9.4e-15 Score=126.46 Aligned_cols=82 Identities=21% Similarity=0.340 Sum_probs=73.9
Q ss_pred CCCCCeEEecCCCCCCCHHHHH----HHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCC
Q 025700 2 TMANGSVYVCNLPHGTDEDMLA----EYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNN 77 (249)
Q Consensus 2 ~~~~~tI~V~nLp~~~te~dL~----~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g 77 (249)
..++++|||+|||.++|+++|+ ++|.+||.|.. |+|++ +++++|||||+|.+.++|++||+.|++
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~--------v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g 74 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILD--------ILVSR---SLKMRGQAFVIFKEVSSATNALRSMQG 74 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEE--------EEEcC---CCCcceEEEEEECCHHHHHHHHHHhcC
Confidence 3568899999999999999977 89999999988 66664 678999999999999999999999999
Q ss_pred ceecCeEEEEEecccCC
Q 025700 78 KDFHGNLIGVFIAESRG 94 (249)
Q Consensus 78 ~~~~g~~i~V~~a~~~~ 94 (249)
..|.++.|+|.+++...
T Consensus 75 ~~~~g~~l~v~~a~~~~ 91 (282)
T 3pgw_A 75 FPFYDKPMRIQYAKTDS 91 (282)
T ss_pred CeeCCcEEEEEEeccCc
Confidence 99999999999987654
No 181
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.56 E-value=8e-15 Score=127.51 Aligned_cols=83 Identities=20% Similarity=0.274 Sum_probs=75.6
Q ss_pred CCCCeEEecCCCCC-CCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCC-CCCcccEEEEEeCCHHHHHHHHHHhCCcee
Q 025700 3 MANGSVYVCNLPHG-TDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKT-TNEYKGDATVTYEDPHAALAAVEWFNNKDF 80 (249)
Q Consensus 3 ~~~~tI~V~nLp~~-~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~-tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~~ 80 (249)
.+..+|||.|||.+ +|+++|+++|.+||.|.. |+|+++.. |+.++|||||+|.++++|++|| .|++..|
T Consensus 208 ~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~--------v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~ 278 (292)
T 2ghp_A 208 LEGREIMIRNLSTELLDENLLRESFEGFGSIEK--------INIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLL 278 (292)
T ss_dssp CTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEE--------EECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEE
T ss_pred CCCceEEEECCCcccCCHHHHHHHHhccCCeeE--------EEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEE
Confidence 35689999999999 999999999999999998 88888876 6999999999999999999999 9999999
Q ss_pred cCeEEEEEecccCC
Q 025700 81 HGNLIGVFIAESRG 94 (249)
Q Consensus 81 ~g~~i~V~~a~~~~ 94 (249)
.|+.|.|.++.+++
T Consensus 279 ~g~~i~V~~a~~k~ 292 (292)
T 2ghp_A 279 GNREISVSLADKKP 292 (292)
T ss_dssp TTEEEEEEECCCCC
T ss_pred CCcEEEEEEecCCC
Confidence 99999999998763
No 182
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.56 E-value=2.6e-14 Score=123.80 Aligned_cols=86 Identities=19% Similarity=0.217 Sum_probs=80.1
Q ss_pred CCCCCeEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceec
Q 025700 2 TMANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFH 81 (249)
Q Consensus 2 ~~~~~tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~~~ 81 (249)
.+++.+|||+|||.++|+++|+++|.+||.|.. |+++.++.++.++|||||+|.+.++|++|++.|++..+.
T Consensus 92 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~--------~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~ 163 (284)
T 3smz_A 92 QPTDALLCVANLPPSLTQQQFEELVRPFGSLER--------CFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLG 163 (284)
T ss_dssp CCCSCEEEEESCCTTCCHHHHHHHHGGGSCEEE--------EEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred cCCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeE--------EEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 346789999999999999999999999999998 889999999999999999999999999999999999999
Q ss_pred CeEEEEEecccCCC
Q 025700 82 GNLIGVFIAESRGK 95 (249)
Q Consensus 82 g~~i~V~~a~~~~~ 95 (249)
++.|.|.++.++..
T Consensus 164 g~~i~v~~a~~~~~ 177 (284)
T 3smz_A 164 PRTLYVHWTDAGQL 177 (284)
T ss_dssp TEECEEEECCGGGC
T ss_pred CcEEEEEECCCCCC
Confidence 99999999987643
No 183
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.55 E-value=1.8e-14 Score=119.04 Aligned_cols=78 Identities=19% Similarity=0.328 Sum_probs=71.0
Q ss_pred CCeEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeE
Q 025700 5 NGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGNL 84 (249)
Q Consensus 5 ~~tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~~~g~~ 84 (249)
..+|||+|||.++|+++|+++|++||.|.. |+|+++. +++++|||||+|+++++|++||+.++ ..|.|+.
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~--------v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr~ 178 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLN--------IQMRRTL-HKAFKGSIFVVFDSIESAKKFVETPG-QKYKETD 178 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEE--------EEEEECT-TCCEEEEEEEEESSHHHHHHHHHCTT-CEETTEE
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEE--------EEEEECC-CCCcccEEEEEECCHHHHHHHHHhCC-CeECCEE
Confidence 478999999999999999999999999998 8888887 48999999999999999999998655 5899999
Q ss_pred EEEEeccc
Q 025700 85 IGVFIAES 92 (249)
Q Consensus 85 i~V~~a~~ 92 (249)
|.|.++..
T Consensus 179 l~V~~~~~ 186 (193)
T 2voo_A 179 LLILFKDD 186 (193)
T ss_dssp CEEEETTT
T ss_pred EEEEEhHH
Confidence 99998764
No 184
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.55 E-value=1.5e-14 Score=122.07 Aligned_cols=79 Identities=25% Similarity=0.358 Sum_probs=72.7
Q ss_pred CCCCeEEecCCCC-CCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceec
Q 025700 3 MANGSVYVCNLPH-GTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFH 81 (249)
Q Consensus 3 ~~~~tI~V~nLp~-~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~~~ 81 (249)
+++.+|||+|||. ++|+++|+++|++||.|.. |+|++++ ++||||+|.++++|++||+.|++..|.
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~--------v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~ 98 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQR--------VKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLH 98 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEE--------EEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCS
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEE--------EEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeEC
Confidence 4678999999999 9999999999999999988 7788775 689999999999999999999999999
Q ss_pred CeEEEEEecccCC
Q 025700 82 GNLIGVFIAESRG 94 (249)
Q Consensus 82 g~~i~V~~a~~~~ 94 (249)
++.|.|.++..+.
T Consensus 99 g~~l~v~~a~~~~ 111 (229)
T 2adc_A 99 GKPIRITLSKHQN 111 (229)
T ss_dssp SSBCEEECCSCCC
T ss_pred CeEEEEEEecCcc
Confidence 9999999988653
No 185
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=6e-14 Score=105.74 Aligned_cols=81 Identities=21% Similarity=0.259 Sum_probs=69.3
Q ss_pred CCCCeEEecCCCCCC-----------CHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHH
Q 025700 3 MANGSVYVCNLPHGT-----------DEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAA 71 (249)
Q Consensus 3 ~~~~tI~V~nLp~~~-----------te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~A 71 (249)
.++.+|+|.||.... ++++|+++|++||.|.. |.| .++ .++|||||+|.++++|++|
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~--------v~i-~~~---~~~G~afV~f~~~~~A~~A 80 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRK--------LLL-FDR---HPDGVASVSFRDPEEADYC 80 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSE--------EEE-ETT---CTTCEEEEECSCHHHHHHH
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeE--------EEE-ecC---CCCEEEEEEECCHHHHHHH
Confidence 568899999994433 26899999999999988 644 554 3799999999999999999
Q ss_pred HHHhCCceecCeEEEEEecccCCC
Q 025700 72 VEWFNNKDFHGNLIGVFIAESRGK 95 (249)
Q Consensus 72 i~~l~g~~~~g~~i~V~~a~~~~~ 95 (249)
|+.||+..|.++.|+|.++.++..
T Consensus 81 i~~lng~~~~gr~l~v~~a~~~~~ 104 (112)
T 2dit_A 81 IQTLDGRWFGGRQITAQAWDGTTD 104 (112)
T ss_dssp HHHSTTCEETTEECEEEECCSCCC
T ss_pred HHHcCCCEECCcEEEEEEeCCCCC
Confidence 999999999999999999987654
No 186
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.53 E-value=5.2e-15 Score=118.91 Aligned_cols=83 Identities=16% Similarity=0.099 Sum_probs=72.1
Q ss_pred CCCCeEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 025700 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (249)
Q Consensus 3 ~~~~tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~~~g 82 (249)
.++.+|||+|||.++|+++|+++|.+||.+... ++++..+++++|||||+|.++++|++||+ |++..|.+
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~---------~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g 80 (175)
T 1fje_B 11 TTPFNLFIGNLNPNKSVAELKVAISELFAKNDL---------AVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFG 80 (175)
T ss_dssp SSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTC---------CCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETT
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceE---------EEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCC
Confidence 457899999999999999999999999987641 34455578899999999999999999995 99999999
Q ss_pred eEEEEEecccCCC
Q 025700 83 NLIGVFIAESRGK 95 (249)
Q Consensus 83 ~~i~V~~a~~~~~ 95 (249)
+.|.|.++.++..
T Consensus 81 ~~l~v~~~~~~~~ 93 (175)
T 1fje_B 81 NEIKLEKPKGRDS 93 (175)
T ss_dssp EEEEEECCCCSSC
T ss_pred eEEEEecCCCccc
Confidence 9999999886543
No 187
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.53 E-value=1.6e-14 Score=123.10 Aligned_cols=79 Identities=19% Similarity=0.175 Sum_probs=69.4
Q ss_pred CCCCeEEecCCCCCC---------CHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHH
Q 025700 3 MANGSVYVCNLPHGT---------DEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVE 73 (249)
Q Consensus 3 ~~~~tI~V~nLp~~~---------te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~ 73 (249)
.++.+|||+||+..+ +|++|+++|++||.|.. |+|+. ++|||||+|.+.++|+.|++
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~--------v~v~~------~kG~AFV~F~~~~~Ae~A~~ 197 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDR--------IRYVE------SKNCGFVKFKYQANAEFAKE 197 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEE--------EEEEG------GGTEEEEEESSHHHHHHHHH
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEE--------EEEEC------CCCEEEEEeCCHHHHHHHHH
Confidence 457899999999998 79999999999999998 77774 47899999999999999999
Q ss_pred HhCCcee------------cCeEEEEEecccCCC
Q 025700 74 WFNNKDF------------HGNLIGVFIAESRGK 95 (249)
Q Consensus 74 ~l~g~~~------------~g~~i~V~~a~~~~~ 95 (249)
.|++..| .++.|.|.+|+..+.
T Consensus 198 am~g~~l~~~~~~e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 198 AMSNQTLLLPSDKEWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp HHTTCCCCCTTSTTGGGGGGSCCCEEEECC----
T ss_pred HhCCCEEeccccccccccCCCCEEEEEEccCCCC
Confidence 9999999 899999999986543
No 188
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.53 E-value=3e-14 Score=123.34 Aligned_cols=83 Identities=20% Similarity=0.200 Sum_probs=77.2
Q ss_pred CCCeEEecCCCCCC-CHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 025700 4 ANGSVYVCNLPHGT-DEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (249)
Q Consensus 4 ~~~tI~V~nLp~~~-te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~~~g 82 (249)
+..+|||.|||.++ |+++|+++|++||.|.. |+|+.+. +++++|+|||+|.++++|.+|++.|++..|.|
T Consensus 183 ~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~--------v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 253 (284)
T 3smz_A 183 HSRCLCVDRLPPGFNDVDALCRALSAVHSPTF--------CQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQADGLSLGG 253 (284)
T ss_dssp SCSEEEEECCCTTCCCHHHHHHHTCSSSCCSE--------EEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred CccEEEEecCCcccCCHHHHHHHhhCCCCeEE--------EEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhCCCccCC
Confidence 56799999999995 99999999999999988 7888887 69999999999999999999999999999999
Q ss_pred eEEEEEecccCCC
Q 025700 83 NLIGVFIAESRGK 95 (249)
Q Consensus 83 ~~i~V~~a~~~~~ 95 (249)
+.|.|.++.++..
T Consensus 254 ~~l~v~~a~~~~~ 266 (284)
T 3smz_A 254 SHLRVSFCAPGPP 266 (284)
T ss_dssp EECEEEECCSSSC
T ss_pred eEEEEEEecCCCc
Confidence 9999999987654
No 189
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.52 E-value=2.5e-14 Score=119.21 Aligned_cols=78 Identities=14% Similarity=0.251 Sum_probs=67.8
Q ss_pred CCCCeEEecCCCCCCCHHHHHHHHHhcCCe--eecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcee
Q 025700 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLL--KKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDF 80 (249)
Q Consensus 3 ~~~~tI~V~nLp~~~te~dL~~~F~~~G~i--~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~~ 80 (249)
+++.+|||.|||+++|+++|+++|++||.| .. |+++.++ +..+|||||+|.+.++|.+||+.||+..|
T Consensus 121 ~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~--------v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~ 190 (205)
T 3tyt_A 121 HPSNVLHFFNAPLEVTEENFFEICDELGVKRPTS--------VKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQM 190 (205)
T ss_dssp CCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSE--------EEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEE--------EEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCc
Confidence 457799999999999999999999999998 55 7777765 55679999999999999999999999999
Q ss_pred cCe----EEEEEec
Q 025700 81 HGN----LIGVFIA 90 (249)
Q Consensus 81 ~g~----~i~V~~a 90 (249)
.+. ++.|.++
T Consensus 191 ~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 191 KNPNGPYPYTLKLC 204 (205)
T ss_dssp CCSSSSSCEECEEE
T ss_pred cCCCCCcceEEEec
Confidence 875 5666654
No 190
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.51 E-value=6.1e-14 Score=121.32 Aligned_cols=75 Identities=25% Similarity=0.309 Sum_probs=69.5
Q ss_pred CCCeEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceec-C
Q 025700 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFH-G 82 (249)
Q Consensus 4 ~~~tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~~~-g 82 (249)
++.+|||+|||.++|+++|+++|++||.|.. |+|+.++ +|||||+|.+.++|++||+.||+..|. +
T Consensus 206 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~--------v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g 272 (282)
T 3pgw_A 206 PNHILFLTNLPEETNELMLSMLFNQFPGFKE--------VRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQN 272 (282)
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHhcCCeEE--------EEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCC
Confidence 5688999999999999999999999999998 7787554 589999999999999999999999999 9
Q ss_pred eEEEEEecc
Q 025700 83 NLIGVFIAE 91 (249)
Q Consensus 83 ~~i~V~~a~ 91 (249)
+.|+|.+++
T Consensus 273 ~~l~v~~ak 281 (282)
T 3pgw_A 273 NAMKISFAK 281 (282)
T ss_pred CEEEEEEec
Confidence 999999986
No 191
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.50 E-value=5.5e-14 Score=105.09 Aligned_cols=82 Identities=12% Similarity=0.154 Sum_probs=71.6
Q ss_pred CCCCeEEecCC--CCCCC--------HHHHHHHHHhcCCeeecCCCCCCeEEEEecCCC--CCcccEEEEEeCCHHHHHH
Q 025700 3 MANGSVYVCNL--PHGTD--------EDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTT--NEYKGDATVTYEDPHAALA 70 (249)
Q Consensus 3 ~~~~tI~V~nL--p~~~t--------e~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~t--g~~rG~aFV~F~s~~~A~~ 70 (249)
.|++.|.|.|| |.++. ++||+++|++||.|.. |+|++++.+ .+++|++||+|.++++|++
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~--------v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~ 74 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKS--------IEIPRPVDGVEVPGCGKIFVEFTSVFDCQK 74 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEE--------EECCCCBTTBCCTTTTEEEEEESSHHHHHH
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEE--------EEEeccCCCCCcCCcEEEEEEECCHHHHHH
Confidence 47889999998 44443 3689999999999998 888888765 4689999999999999999
Q ss_pred HHHHhCCceecCeEEEEEeccc
Q 025700 71 AVEWFNNKDFHGNLIGVFIAES 92 (249)
Q Consensus 71 Ai~~l~g~~~~g~~i~V~~a~~ 92 (249)
|++.||+..|.|+.|.|.++..
T Consensus 75 Ai~~lnG~~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 75 AMQGLTGRKFANRVVVTKYCDP 96 (105)
T ss_dssp HHHHHTTCEETTEECEEEEECH
T ss_pred HHHHhCCCEeCCCEEEEEEeCH
Confidence 9999999999999999999764
No 192
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.50 E-value=2.4e-14 Score=117.47 Aligned_cols=78 Identities=26% Similarity=0.366 Sum_probs=71.7
Q ss_pred CCCeEEecCCCC-CCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 025700 4 ANGSVYVCNLPH-GTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (249)
Q Consensus 4 ~~~tI~V~nLp~-~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~~~g 82 (249)
.+++|||+|||+ ++|+++|+++|++||.|.. |++++++ +|||||+|.++++|++||+.|++..|.+
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~--------v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g 68 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQR--------VKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHG 68 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSE--------EECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSS
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEE--------EEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecC
Confidence 578999999999 9999999999999999987 7777664 6899999999999999999999999999
Q ss_pred eEEEEEecccCC
Q 025700 83 NLIGVFIAESRG 94 (249)
Q Consensus 83 ~~i~V~~a~~~~ 94 (249)
+.|.|.++....
T Consensus 69 ~~l~v~~a~~~~ 80 (198)
T 1qm9_A 69 KPIRITLSKHQN 80 (198)
T ss_dssp CCCEEEECCCCS
T ss_pred eEEEEEEecCCC
Confidence 999999988654
No 193
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.49 E-value=1.5e-14 Score=118.14 Aligned_cols=87 Identities=20% Similarity=0.297 Sum_probs=65.8
Q ss_pred CCCCeEEecCCCCCCCHHHHHHHHHhcCCeeecCCC-CCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceec
Q 025700 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRT-GRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFH 81 (249)
Q Consensus 3 ~~~~tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~-g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~~~ 81 (249)
..+++|||+|||.++|+++|+++|++||.|...... +.+.+.+. +++++|||||+|.++++|++|| .|++..|.
T Consensus 2 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~----~~~~~g~afV~F~~~~~A~~Al-~l~g~~~~ 76 (198)
T 2yh0_A 2 AMARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQ----INQDKNFAFLEFRSVDETTQAM-AFDGIIFQ 76 (198)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEE----EETTTTEEEEEESCSHHHHHHG-GGTTEEET
T ss_pred CceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeE----ecCCCCEEEEEeCCHHHHHHHH-HhcCCEEc
Confidence 467899999999999999999999999533221000 00001121 2456899999999999999999 79999999
Q ss_pred CeEEEEEecccCC
Q 025700 82 GNLIGVFIAESRG 94 (249)
Q Consensus 82 g~~i~V~~a~~~~ 94 (249)
++.|.|.++....
T Consensus 77 g~~i~v~~~~~~~ 89 (198)
T 2yh0_A 77 GQSLKIRRPHDYQ 89 (198)
T ss_dssp TEEEEEECCCCCC
T ss_pred CceEEEeCCCCCC
Confidence 9999999887653
No 194
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.49 E-value=6e-14 Score=115.07 Aligned_cols=78 Identities=18% Similarity=0.276 Sum_probs=70.3
Q ss_pred CCCCeEEecCCCCCCCHHHHHHHHHhcC-CeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceec
Q 025700 3 MANGSVYVCNLPHGTDEDMLAEYFGTIG-LLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFH 81 (249)
Q Consensus 3 ~~~~tI~V~nLp~~~te~dL~~~F~~~G-~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~~~ 81 (249)
+++.+|||+|||.++|+++|+++|.+|| .|.. |+|+.+ .+|+|||+|.++++|++||+.|++..+.
T Consensus 118 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~--------v~i~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~ 184 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKG--------FKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLG 184 (198)
T ss_dssp CCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCE--------EEESST-----TSSCEEEECSSHHHHHHHHHHHTSSCCS
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHcCCCceE--------EEEEeC-----CCcEEEEEeCCHHHHHHHHHHhcCCccC
Confidence 4578999999999999999999999999 8887 666553 2689999999999999999999999999
Q ss_pred -CeEEEEEecccC
Q 025700 82 -GNLIGVFIAESR 93 (249)
Q Consensus 82 -g~~i~V~~a~~~ 93 (249)
++.|+|.+++++
T Consensus 185 ~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 185 ENHHLRVSFSKST 197 (198)
T ss_dssp SCCSCCEEEECCC
T ss_pred CCCeEEEEeeccc
Confidence 999999998764
No 195
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.47 E-value=1.5e-13 Score=115.79 Aligned_cols=78 Identities=18% Similarity=0.276 Sum_probs=70.2
Q ss_pred CCCCeEEecCCCCCCCHHHHHHHHHhcC-CeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceec
Q 025700 3 MANGSVYVCNLPHGTDEDMLAEYFGTIG-LLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFH 81 (249)
Q Consensus 3 ~~~~tI~V~nLp~~~te~dL~~~F~~~G-~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~~~ 81 (249)
.++.+|||.|||.++|+++|+++|.+|| .|.. |+|+.+ .++||||+|.+.++|++||+.|++..|.
T Consensus 149 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~--------v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 215 (229)
T 2adc_A 149 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKG--------FKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLG 215 (229)
T ss_dssp CSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEE--------EEECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSS
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeE--------EEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccC
Confidence 3578999999999999999999999999 8887 666542 3689999999999999999999999999
Q ss_pred -CeEEEEEecccC
Q 025700 82 -GNLIGVFIAESR 93 (249)
Q Consensus 82 -g~~i~V~~a~~~ 93 (249)
++.|+|.+++++
T Consensus 216 ~g~~l~v~~a~~~ 228 (229)
T 2adc_A 216 ENHHLRVSFSKST 228 (229)
T ss_dssp SSCBCEEEECSSC
T ss_pred CCCeEEEEEecCC
Confidence 999999998864
No 196
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.47 E-value=1.9e-13 Score=117.47 Aligned_cols=84 Identities=18% Similarity=0.158 Sum_probs=74.5
Q ss_pred CCCCCeEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhC-Ccee
Q 025700 2 TMANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFN-NKDF 80 (249)
Q Consensus 2 ~~~~~tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~-g~~~ 80 (249)
..++.+|||+|||..+|+++|+++|.+||.|.. |+|+.+ .+++++|||||+|.+.++|.+||+.|+ +..+
T Consensus 93 a~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~--------v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~ 163 (261)
T 3sde_A 93 ATHGAALTVKNLSPVVSNELLEQAFSQFGPVEK--------AVVVVD-DRGRATGKGFVEFAAKPPARKALERCGDGAFL 163 (261)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEE--------EEEEEE-TTSCEEEEEEEEESSHHHHHHHHHHHHHSCEE
T ss_pred cccCCcccccCCCCCCCHHHHHHHHHhcCCeEE--------EEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEE
Confidence 346789999999999999999999999999998 889999 489999999999999999999999995 4444
Q ss_pred c---CeEEEEEecccCC
Q 025700 81 H---GNLIGVFIAESRG 94 (249)
Q Consensus 81 ~---g~~i~V~~a~~~~ 94 (249)
. ++.|.|.++.+..
T Consensus 164 ~~~~~r~i~v~~~~~~~ 180 (261)
T 3sde_A 164 LTTTPRPVIVEPMEQFD 180 (261)
T ss_dssp SSSSCCBCEEEECCCEE
T ss_pred ecCCCceEEEeeccccC
Confidence 4 8999999987654
No 197
>3gj8_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.82A {Rattus norvegicus} PDB: 3gj4_B*
Probab=99.46 E-value=1.5e-14 Score=105.46 Aligned_cols=87 Identities=29% Similarity=0.523 Sum_probs=26.7
Q ss_pred CCCCCccCCCcCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeecCCCCCe
Q 025700 145 QDGDWMCPNTSCSNVNFAFRGVCNRCGTARPVGGPGAGGRAGGRGRGRAGNESGSQGRQIGAATGLFGPNDWSCPMCGNI 224 (249)
Q Consensus 145 r~Gdw~C~~~~c~~~nf~~r~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dw~c~~c~~~ 224 (249)
+.|||.|+ .|...||+.+..|++|.++||........... . . ....+...+......++++|.|..|.++
T Consensus 5 ~~g~W~C~--~C~~~N~~~~~~C~~C~~pkp~~~~~~~~~~~---~--~---~~~~~~~~g~~~f~~~~g~W~C~~C~~~ 74 (92)
T 3gj8_B 5 SVGSWECP--VCCVSNKAEDSRCVSCTSEKPGLVSASSSNSV---P--V---SLPSGGCLGLDKFKKPEGSWDCEVCLVQ 74 (92)
T ss_dssp ---------------------------------------------------------------------CCEECTTTCCE
T ss_pred CCcCCCCC--cCCCEeccccceecccCCCCCCCCCccccccC---c--c---cccccccccccccCCCCCcccCCcCCcC
Confidence 57899999 99999999999999999999864322100000 0 0 0000000000111236799999999999
Q ss_pred eeeccccCccCCCCCCC
Q 025700 225 NWAKRTKCNICNTNKPG 241 (249)
Q Consensus 225 n~~~r~~c~~C~~~~~~ 241 (249)
|++.+++|+.|.+|||+
T Consensus 75 N~a~~~~C~~C~~pkp~ 91 (92)
T 3gj8_B 75 NKADSTKCIACESAKPG 91 (92)
T ss_dssp ECSSCSBCTTTCCBCC-
T ss_pred ChhhcccccccCCCCCC
Confidence 99999999999999986
No 198
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.46 E-value=1.6e-13 Score=119.26 Aligned_cols=83 Identities=14% Similarity=0.166 Sum_probs=70.3
Q ss_pred CCCeEEecCCCCCCCHHHHHHHHHhcC-CeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 025700 4 ANGSVYVCNLPHGTDEDMLAEYFGTIG-LLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (249)
Q Consensus 4 ~~~tI~V~nLp~~~te~dL~~~F~~~G-~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~~~g 82 (249)
++.+|||+|||.++|+++|+++|.+|| .|.. |+|+.++. +.++|||||+|.+.++|++||+.|++..|.+
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~--------v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 186 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALS--------IRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEG 186 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCE--------EECC--------CCEEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEE--------EEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 578999999999999999999999999 9887 77888875 7899999999999999999999999999999
Q ss_pred eEEEEEecccCCC
Q 025700 83 NLIGVFIAESRGK 95 (249)
Q Consensus 83 ~~i~V~~a~~~~~ 95 (249)
+.|.|.++.++..
T Consensus 187 ~~l~v~~a~~~~~ 199 (292)
T 2ghp_A 187 YTLVTKVSNPLEK 199 (292)
T ss_dssp EECEEEECCCC--
T ss_pred cEEEEEECCCCcc
Confidence 9999999887654
No 199
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.46 E-value=2.4e-13 Score=103.75 Aligned_cols=82 Identities=17% Similarity=0.234 Sum_probs=71.8
Q ss_pred CCCCeEEecCCC--CCC---CHHHHHHHHHhcCCeeecCCCCCCeEEEEecCC----CCCcccEEEEEeCCHHHHHHHHH
Q 025700 3 MANGSVYVCNLP--HGT---DEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKT----TNEYKGDATVTYEDPHAALAAVE 73 (249)
Q Consensus 3 ~~~~tI~V~nLp--~~~---te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~----tg~~rG~aFV~F~s~~~A~~Ai~ 73 (249)
+++.+|+|.||- .++ .++||+++|++||.|.. |+|++++. +++++|++||+|.++++|++|++
T Consensus 18 ~ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~--------v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~ 89 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNR--------VIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQ 89 (118)
T ss_dssp HSCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEE--------EEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeE--------EEEeecCCCcccCCcceEEEEEEECCHHHHHHHHH
Confidence 478999999993 222 36899999999999998 88888865 46788999999999999999999
Q ss_pred HhCCceecCeEEEEEeccc
Q 025700 74 WFNNKDFHGNLIGVFIAES 92 (249)
Q Consensus 74 ~l~g~~~~g~~i~V~~a~~ 92 (249)
.||+..|.|+.|.|.++..
T Consensus 90 ~LnGr~f~GR~i~v~~~~~ 108 (118)
T 3ue2_A 90 ALNGRWFAGRKVVAEVYDQ 108 (118)
T ss_dssp HHTTCEETTEECEEEEECH
T ss_pred HHCCCEECCcEEEEEEcCh
Confidence 9999999999999999764
No 200
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.45 E-value=3.2e-13 Score=107.85 Aligned_cols=86 Identities=20% Similarity=0.290 Sum_probs=64.8
Q ss_pred CCCCeEEecCCCCCCCHHHHHHHHHhcCCeeecC-CCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceec
Q 025700 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDK-RTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFH 81 (249)
Q Consensus 3 ~~~~tI~V~nLp~~~te~dL~~~F~~~G~i~~~~-~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~~~ 81 (249)
.++++|||+|||.++|+++|+++|++||.+.... ..+.+.+.+. +++++|||||+|.++++|++|| .|++..+.
T Consensus 2 r~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~----~~~~~g~afV~f~~~~~A~~A~-~~~~~~~~ 76 (172)
T 2g4b_A 2 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQ----INQDKNFAFLEFRSVDETTQAM-AFDGIIFQ 76 (172)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEE----EETTTTEEEEEESSHHHHHHHG-GGTTCEET
T ss_pred CcccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeE----ecCCCCEEEEEeCCHHHHHHHH-HhCCcEec
Confidence 3678999999999999999999999993221100 0000001122 2345899999999999999999 79999999
Q ss_pred CeEEEEEecccC
Q 025700 82 GNLIGVFIAESR 93 (249)
Q Consensus 82 g~~i~V~~a~~~ 93 (249)
++.|.|.++...
T Consensus 77 g~~i~v~~~~~~ 88 (172)
T 2g4b_A 77 GQSLKIRRPHDY 88 (172)
T ss_dssp TEECEEECCSSC
T ss_pred CceeeecCCccc
Confidence 999999987654
No 201
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.45 E-value=5.7e-14 Score=104.81 Aligned_cols=72 Identities=18% Similarity=0.229 Sum_probs=61.3
Q ss_pred ecCCCCCCCHHHHHHHH------------HhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCC
Q 025700 10 VCNLPHGTDEDMLAEYF------------GTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNN 77 (249)
Q Consensus 10 V~nLp~~~te~dL~~~F------------~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g 77 (249)
+.+||..+++++|+++| ++||.|.. |+|++++. ++++|||||+|.++++|++|++.||+
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~--------v~i~~~~~-~~~~G~~fV~f~~~~~A~~A~~~lng 90 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEE--------MNVCDNLG-DHLVGNVYVKFRREEDAEKAVIDLNN 90 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEE--------EEECCSSS-SSSEEEEEEEESCHHHHHHHHHHHTT
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEE--------EEEEeCCC-CCccEEEEEEECCHHHHHHHHHHHCC
Confidence 44555566777666655 99999998 88888764 78999999999999999999999999
Q ss_pred ceecCeEEEEEec
Q 025700 78 KDFHGNLIGVFIA 90 (249)
Q Consensus 78 ~~~~g~~i~V~~a 90 (249)
..+.|+.|+|+++
T Consensus 91 ~~~~Gr~i~v~~s 103 (104)
T 1jmt_A 91 RWFNGQPIHAELS 103 (104)
T ss_dssp CEETTEECCEEEC
T ss_pred CEECCEEEEEEEc
Confidence 9999999999986
No 202
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.44 E-value=2.5e-13 Score=116.83 Aligned_cols=75 Identities=19% Similarity=0.242 Sum_probs=68.5
Q ss_pred CCCeEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCe
Q 025700 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGN 83 (249)
Q Consensus 4 ~~~tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~~~g~ 83 (249)
++++|||+|||.++|+++|+++|++||.|.. |+|.+ ++|||||+|.++++|++||+.|++..|.++
T Consensus 21 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~--------v~i~~------~kg~afV~f~~~~~A~~A~~~l~g~~i~g~ 86 (261)
T 3sde_A 21 QRCRLFVGNLPTDITEEDFKRLFERYGEPSE--------VFINR------DRGFGFIRLESRTLAEIAKAELDGTILKSR 86 (261)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHTGGGCCCSE--------EEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCEEE--------EEEeC------CCcEEEEEECCHHHHHHHHHHcCCcEECCc
Confidence 4578999999999999999999999999988 66653 368999999999999999999999999999
Q ss_pred EEEEEeccc
Q 025700 84 LIGVFIAES 92 (249)
Q Consensus 84 ~i~V~~a~~ 92 (249)
.|.|.++.+
T Consensus 87 ~l~v~~a~~ 95 (261)
T 3sde_A 87 PLRIRFATH 95 (261)
T ss_dssp ECEEEECCC
T ss_pred eeEeeeccc
Confidence 999999875
No 203
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=3.1e-12 Score=94.75 Aligned_cols=77 Identities=19% Similarity=0.152 Sum_probs=63.0
Q ss_pred CCeEEecCCC-------CCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCC
Q 025700 5 NGSVYVCNLP-------HGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNN 77 (249)
Q Consensus 5 ~~tI~V~nLp-------~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g 77 (249)
..+|.|.-.. .++|+++|+++|.+||.|.. |+|+ ++++|||||+|+++++|+.||+.+++
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~--------v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~ 76 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLN--------LVLS-----SKKPGTAVVEFATVKAAELAVQNEVG 76 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEE--------EEEE-----SSSSSEEEEEESCHHHHHHHHHTCCB
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEE--------EEEc-----cCCCCEEEEEECCHHHHHHHHHhcCC
Confidence 4566666543 46899999999999999988 6676 36899999999999999999997544
Q ss_pred ceecCeEEEEEecccCCCC
Q 025700 78 KDFHGNLIGVFIAESRGKD 96 (249)
Q Consensus 78 ~~~~g~~i~V~~a~~~~~~ 96 (249)
+.++.|+|++++++...
T Consensus 77 --~~g~~l~V~~a~~~~~~ 93 (100)
T 2d9o_A 77 --LVDNPLKISWLEGQPQD 93 (100)
T ss_dssp --CSSSBCEEECSSCCCCC
T ss_pred --CCCCeEEEEEccCCCCC
Confidence 67999999998876543
No 204
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.37 E-value=1.1e-12 Score=117.30 Aligned_cols=76 Identities=21% Similarity=0.254 Sum_probs=64.3
Q ss_pred CCCCCeEEecC--CCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCce
Q 025700 2 TMANGSVYVCN--LPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKD 79 (249)
Q Consensus 2 ~~~~~tI~V~n--Lp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~ 79 (249)
+.++.+|||+| |+..+||++|+++|++||.|.. |.+.. +||||||+|++.++|++||+.||+.+
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~--------v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~ 80 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDA--------LLMPP------NKPYSFARYRTTEESKRAYVTLNGKE 80 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEE--------EECCT------TCSEEEEEESSHHHHHHHHHHTTTCE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEE--------EEEeC------CCCEEEEEECCHHHHHHHHHHhCCCc
Confidence 56789999999 5789999999999999999987 54432 47899999999999999999999998
Q ss_pred ec---Ce--EEEEEecc
Q 025700 80 FH---GN--LIGVFIAE 91 (249)
Q Consensus 80 ~~---g~--~i~V~~a~ 91 (249)
+. |+ .|.|.++.
T Consensus 81 ~~~~~g~~~~ly~~~~~ 97 (345)
T 3tht_A 81 VVDDLGQKITLYLNFVE 97 (345)
T ss_dssp EECTTSCEEECEEEECS
T ss_pred cccccCCceEEEEEEee
Confidence 84 34 57777764
No 205
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A
Probab=99.31 E-value=7.6e-13 Score=77.79 Aligned_cols=31 Identities=52% Similarity=1.279 Sum_probs=29.2
Q ss_pred CCCCeecCCCCCeeeeccccCccCCCCCCCC
Q 025700 212 GPNDWSCPMCGNINWAKRTKCNICNTNKPGH 242 (249)
Q Consensus 212 ~~~dw~c~~c~~~n~~~r~~c~~C~~~~~~~ 242 (249)
+++||+|+.|+++||++|..|++|++|++++
T Consensus 3 ~~gDW~C~~C~~~Nfa~R~~C~~C~~pk~~~ 33 (33)
T 2k1p_A 3 SANDWQCKTCSNVNWARRSECNMCNTPKYAK 33 (33)
T ss_dssp SSSSCBCSSSCCBCCTTCSBCSSSCCBTTCC
T ss_pred CCCCcccCCCCCccccccccccccCCcCCCC
Confidence 6799999999999999999999999999864
No 206
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.26 E-value=2.4e-11 Score=92.06 Aligned_cols=78 Identities=19% Similarity=0.233 Sum_probs=64.8
Q ss_pred CCCCeEEecCCC--CCC--------CHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHH
Q 025700 3 MANGSVYVCNLP--HGT--------DEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAV 72 (249)
Q Consensus 3 ~~~~tI~V~nLp--~~~--------te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai 72 (249)
.+++.|.|.||= .+. .++||+++|++||.|.. |.|.++. ++||+||+|.+.++|++|+
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~--------v~i~~~~----~~G~~fV~f~~~e~A~~Ai 72 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIH--------IYVDKNS----AQGNVYVKCPSIAAAIAAV 72 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSE--------EEECTTC----TTCCEEEECSSHHHHHHHH
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEE--------EEEecCC----CcEEEEEEECCHHHHHHHH
Confidence 467889999983 221 23578999999999987 6665542 5899999999999999999
Q ss_pred HHhCCceecCeEEEEEeccc
Q 025700 73 EWFNNKDFHGNLIGVFIAES 92 (249)
Q Consensus 73 ~~l~g~~~~g~~i~V~~a~~ 92 (249)
+.|||..|.|+.|.|+++..
T Consensus 73 ~~lnG~~f~GR~i~v~~~~~ 92 (114)
T 3s6e_A 73 NALHGRWFAGKMITAAYVPL 92 (114)
T ss_dssp HHHTTCEETTEECEEEEECH
T ss_pred HHhCCCEECCEEEEEEEEcH
Confidence 99999999999999999753
No 207
>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*
Probab=99.26 E-value=2.3e-12 Score=75.23 Aligned_cols=30 Identities=37% Similarity=0.695 Sum_probs=28.6
Q ss_pred CCCCeecCCCCCeeeeccccCccCCCCCCC
Q 025700 212 GPNDWSCPMCGNINWAKRTKCNICNTNKPG 241 (249)
Q Consensus 212 ~~~dw~c~~c~~~n~~~r~~c~~C~~~~~~ 241 (249)
+++||.|+.|+++||++|..|++|++|+++
T Consensus 2 k~gDW~C~~C~~~Nfa~r~~C~~C~~pr~~ 31 (32)
T 2lk0_A 2 KFEDWLCNKCCLNNFRKRLKCFRCGADKFD 31 (32)
T ss_dssp CCSEEECTTTCCEEETTCCBCTTTCCBTTC
T ss_pred CCCCCCcCcCcCCcChhcceecCCCCcCCC
Confidence 578999999999999999999999999986
No 208
>1n0z_A ZNF265; zinc finger, RNA splicing, transcription; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=99.23 E-value=7.4e-12 Score=78.70 Aligned_cols=36 Identities=39% Similarity=0.899 Sum_probs=32.6
Q ss_pred CCCCCCCCCeecC--CCCCeeeeccccCccCCCCCCCC
Q 025700 207 ATGLFGPNDWSCP--MCGNINWAKRTKCNICNTNKPGH 242 (249)
Q Consensus 207 ~~~~~~~~dw~c~--~c~~~n~~~r~~c~~C~~~~~~~ 242 (249)
.+..++++||+|+ .|+++||++|+.|++|++||++.
T Consensus 6 ~~~~~~~GDW~C~~~~C~~~Nfa~R~~C~~C~~pr~~~ 43 (45)
T 1n0z_A 6 KNFRVSDGDWICPDKKCGNVNFARRTSCDRCGREKTTG 43 (45)
T ss_dssp SSCSSCSSSCBCSSTTTCCBCCSSCSBCSSSCCBCCCC
T ss_pred ccCCCCCCCcCCCCCCCCCEEccccccccccCCcCCCC
Confidence 3456789999998 99999999999999999999875
No 209
>1n0z_A ZNF265; zinc finger, RNA splicing, transcription; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=99.21 E-value=6.8e-12 Score=78.85 Aligned_cols=36 Identities=50% Similarity=1.175 Sum_probs=32.6
Q ss_pred ccCCCCCccCCCcCCCCCcccccccccccccCCCCC
Q 025700 143 WQQDGDWMCPNTSCSNVNFAFRGVCNRCGTARPVGG 178 (249)
Q Consensus 143 ~~r~Gdw~C~~~~c~~~nf~~r~~C~~C~~~~~~~~ 178 (249)
..+.|||+|+++.|+++||++|+.||+|+++|+++.
T Consensus 9 ~~~~GDW~C~~~~C~~~Nfa~R~~C~~C~~pr~~~~ 44 (45)
T 1n0z_A 9 RVSDGDWICPDKKCGNVNFARRTSCDRCGREKTTGP 44 (45)
T ss_dssp SSCSSSCBCSSTTTCCBCCSSCSBCSSSCCBCCCCC
T ss_pred CCCCCCcCCCCCCCCCEEccccccccccCCcCCCCC
Confidence 347899999999999999999999999999998763
No 210
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.21 E-value=4.8e-11 Score=86.07 Aligned_cols=76 Identities=21% Similarity=0.283 Sum_probs=64.9
Q ss_pred CCCCCCeEEecCCCC----CCCH----HHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHH
Q 025700 1 MTMANGSVYVCNLPH----GTDE----DMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAV 72 (249)
Q Consensus 1 m~~~~~tI~V~nLp~----~~te----~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai 72 (249)
|-+|..||+|.-++. ++-. .+|.+.|.+||.|.. |+++.++ +||+|.+.++|.+||
T Consensus 3 ~GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~--------vr~~~d~--------~fVtF~d~~sAlaAi 66 (91)
T 2dnr_A 3 SGSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVIL--------IRFVEDK--------MWVTFLEGSSALNVL 66 (91)
T ss_dssp CCCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEE--------EEECSSS--------EEEEESSHHHHHHGG
T ss_pred CCCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEE--------EEEecCC--------EEEEECChHHHHHHH
Confidence 457889999988772 3333 678899999999888 7888775 899999999999999
Q ss_pred HHhCCceecCeEEEEEecccC
Q 025700 73 EWFNNKDFHGNLIGVFIAESR 93 (249)
Q Consensus 73 ~~l~g~~~~g~~i~V~~a~~~ 93 (249)
+ |++..+.|+.|+|+++.+.
T Consensus 67 ~-mnG~~v~Gr~LkV~lkt~d 86 (91)
T 2dnr_A 67 S-LNGKELLNRTITIALKSPS 86 (91)
T ss_dssp G-GTTCEETTEEEEEEECCCS
T ss_pred h-cCCeEeCCeEEEEEeCCCC
Confidence 8 9999999999999998764
No 211
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A
Probab=99.13 E-value=2.4e-11 Score=71.32 Aligned_cols=30 Identities=47% Similarity=0.991 Sum_probs=28.3
Q ss_pred CCCCCccCCCcCCCCCcccccccccccccCCC
Q 025700 145 QDGDWMCPNTSCSNVNFAFRGVCNRCGTARPV 176 (249)
Q Consensus 145 r~Gdw~C~~~~c~~~nf~~r~~C~~C~~~~~~ 176 (249)
+.|||+|+ .|+++||++|+.|++|++||+.
T Consensus 3 ~~gDW~C~--~C~~~Nfa~R~~C~~C~~pk~~ 32 (33)
T 2k1p_A 3 SANDWQCK--TCSNVNWARRSECNMCNTPKYA 32 (33)
T ss_dssp SSSSCBCS--SSCCBCCTTCSBCSSSCCBTTC
T ss_pred CCCCcccC--CCCCccccccccccccCCcCCC
Confidence 68999999 9999999999999999999974
No 212
>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*
Probab=99.09 E-value=1.8e-11 Score=71.40 Aligned_cols=30 Identities=37% Similarity=0.755 Sum_probs=28.3
Q ss_pred CCCCCccCCCcCCCCCcccccccccccccCCC
Q 025700 145 QDGDWMCPNTSCSNVNFAFRGVCNRCGTARPV 176 (249)
Q Consensus 145 r~Gdw~C~~~~c~~~nf~~r~~C~~C~~~~~~ 176 (249)
+.|||+|+ .|+++||++|..|++|++||++
T Consensus 2 k~gDW~C~--~C~~~Nfa~r~~C~~C~~pr~~ 31 (32)
T 2lk0_A 2 KFEDWLCN--KCCLNNFRKRLKCFRCGADKFD 31 (32)
T ss_dssp CCSEEECT--TTCCEEETTCCBCTTTCCBTTC
T ss_pred CCCCCCcC--cCcCCcChhcceecCCCCcCCC
Confidence 57999999 8999999999999999999986
No 213
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.07 E-value=3.3e-10 Score=86.43 Aligned_cols=75 Identities=15% Similarity=0.121 Sum_probs=66.0
Q ss_pred CCCCeEEecCCCCC-CCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCC-HHHHHHHHHHhC--Cc
Q 025700 3 MANGSVYVCNLPHG-TDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYED-PHAALAAVEWFN--NK 78 (249)
Q Consensus 3 ~~~~tI~V~nLp~~-~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s-~~~A~~Ai~~l~--g~ 78 (249)
++...|||+||+.+ +++++|+++|++||.|.. |.+.++.. .|||+|.+ +++|++|++.|+ +.
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~G~V~~--------Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~ 81 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKW--------IDFVRGAK------EGIILFKEKAKEALGKAKDANNGNL 81 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEE--------EECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCB
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEE--------EEEecCCC------EEEEEECCChHHHHHHHHHhhcCCc
Confidence 45678999999999 999999999999999998 77877765 59999999 899999999985 67
Q ss_pred eecCeEEEEEecc
Q 025700 79 DFHGNLIGVFIAE 91 (249)
Q Consensus 79 ~~~g~~i~V~~a~ 91 (249)
.|.+..+++++..
T Consensus 82 ~i~g~~~~~evL~ 94 (121)
T 1owx_A 82 QLRNKEVTWEVLE 94 (121)
T ss_dssp CTTSSSEEEEECC
T ss_pred EEeCcEEEEEECC
Confidence 7889888888755
No 214
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.05 E-value=4.2e-10 Score=81.54 Aligned_cols=74 Identities=19% Similarity=0.261 Sum_probs=62.9
Q ss_pred CCCCCCeEEecCCCCC------CCH---HHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHH
Q 025700 1 MTMANGSVYVCNLPHG------TDE---DMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAA 71 (249)
Q Consensus 1 m~~~~~tI~V~nLp~~------~te---~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~A 71 (249)
|-+|..||+|.-++.. ..+ .+|.+.|.+||.|.. |+++.++ +||+|.+.++|.+|
T Consensus 11 ~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vil--------vr~v~d~--------~fVtF~d~~sAl~A 74 (95)
T 1ufw_A 11 QGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVL--------VRINQGQ--------MLVTFADSHSALSV 74 (95)
T ss_dssp CCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSE--------EEEETTE--------EEEECSCSHHHHHH
T ss_pred cCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEE--------EEEecCc--------EEEEEcChHHHHHH
Confidence 4578899999988743 232 568899999998877 7888775 99999999999999
Q ss_pred HHHhCCceecCeEEEEEecc
Q 025700 72 VEWFNNKDFHGNLIGVFIAE 91 (249)
Q Consensus 72 i~~l~g~~~~g~~i~V~~a~ 91 (249)
|+ |++..+.++.|+|++..
T Consensus 75 I~-ldG~~v~Gr~L~V~~k~ 93 (95)
T 1ufw_A 75 LD-VDGMKVKGRAVKISGPS 93 (95)
T ss_dssp HH-GGGSEETTEEEEEECCC
T ss_pred Hh-cCCeeeCCeEEEEeccC
Confidence 99 99999999999999754
No 215
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.83 E-value=7.3e-09 Score=86.54 Aligned_cols=69 Identities=19% Similarity=0.264 Sum_probs=60.6
Q ss_pred CCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecC----CCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEecc
Q 025700 16 GTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDK----TTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGNLIGVFIAE 91 (249)
Q Consensus 16 ~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~----~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~~~g~~i~V~~a~ 91 (249)
+-.+++|.+.|++||.|.. |.|+++. .++.++|++||+|.+.++|++||+.|+|..+.|+.|.|.++.
T Consensus 140 ~e~~~dl~~e~~~~G~v~~--------~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 140 DDLEGEVTEECGKFGAVNR--------VIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp TTHHHHHHHHHTTTSCEEE--------EEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHHHccCCeEE--------EEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 3456889999999999998 7787554 455899999999999999999999999999999999999975
Q ss_pred c
Q 025700 92 S 92 (249)
Q Consensus 92 ~ 92 (249)
.
T Consensus 212 ~ 212 (222)
T 3dxb_A 212 Q 212 (222)
T ss_dssp H
T ss_pred H
Confidence 3
No 216
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.36 E-value=3.2e-06 Score=62.58 Aligned_cols=71 Identities=15% Similarity=0.276 Sum_probs=61.0
Q ss_pred CCeEEecCCCCCCCHHHHHHHHHhc-----CCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCce
Q 025700 5 NGSVYVCNLPHGTDEDMLAEYFGTI-----GLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKD 79 (249)
Q Consensus 5 ~~tI~V~nLp~~~te~dL~~~F~~~-----G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~ 79 (249)
.++|-|-+||..+++..|+.+++.+ +.+.. |.|..|. +-|+|+|.+...|-+|.-.|+|.+
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~K--------I~L~pDH------~GAivef~d~~~AgKasLaL~G~e 86 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRK--------ILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQ 86 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSE--------EEEETTT------TEEEEECSCHHHHHHHHHHHSSEE
T ss_pred CcEEEEecCCCCCCHHHHHHHHhhhhccCccceeE--------EEEecCC------CceEEEEccchhhHHHHhhcCCee
Confidence 6789999999999999999999999 66654 5455443 369999999999999998899999
Q ss_pred ecCeEEEEEe
Q 025700 80 FHGNLIGVFI 89 (249)
Q Consensus 80 ~~g~~i~V~~ 89 (249)
|.+++|++--
T Consensus 87 f~gr~Lr~gT 96 (117)
T 2l9w_A 87 FQGKVIRSGT 96 (117)
T ss_dssp ETTEEEEEEC
T ss_pred ecCeEEEecC
Confidence 9999999864
No 217
>3gj7_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.93A {Rattus norvegicus} PDB: 2k0c_A 3ch5_B* 3gj6_B*
Probab=98.14 E-value=9.1e-07 Score=64.70 Aligned_cols=93 Identities=23% Similarity=0.329 Sum_probs=26.5
Q ss_pred CCCCCccCCCcCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeecCCCCCe
Q 025700 145 QDGDWMCPNTSCSNVNFAFRGVCNRCGTARPVGGPGAGGRAGGRGRGRAGNESGSQGRQIGAATGLFGPNDWSCPMCGNI 224 (249)
Q Consensus 145 r~Gdw~C~~~~c~~~nf~~r~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dw~c~~c~~~ 224 (249)
....|.|. .|-..|......|..|..+|+..................- .. -......+......++.|.|..|-..
T Consensus 6 ~~~~W~C~--~C~~~N~~~~~kC~aC~~pr~~~~~~~~~~~~~~~s~~~~-~~-~~~~~gfgd~fk~~~g~W~C~~C~~~ 81 (98)
T 3gj7_B 6 AGSSWQCD--TCLLQNKVTDNKCIACQAAKLPLKETAKQTGIGTPSKSDK-PA-STSGTGFGDKFKPAIGTWDCDTCLVQ 81 (98)
T ss_dssp ---------------------------------------------------------------------CCEECTTTCCE
T ss_pred CCCcccCC--ccccCChhhcccccccCCCCCCCcccccccCccCcccccc-cc-cccccchhhccCCCCCcccCCcCcCC
Confidence 45689999 9999999999999999999985432110000000000000 00 00000001111235689999999999
Q ss_pred eeeccccCccCCCCCCC
Q 025700 225 NWAKRTKCNICNTNKPG 241 (249)
Q Consensus 225 n~~~r~~c~~C~~~~~~ 241 (249)
|.+....|..|.+|||+
T Consensus 82 N~~~~~~C~aC~tpkPg 98 (98)
T 3gj7_B 82 NKPEAVKCVACETPKPG 98 (98)
T ss_dssp ECTTCSBCTTTCCBCC-
T ss_pred ChhhcceecccCCCCCC
Confidence 99999999999999985
No 218
>3gj5_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1
Probab=98.12 E-value=1.4e-06 Score=50.97 Aligned_cols=32 Identities=41% Similarity=0.890 Sum_probs=25.8
Q ss_pred CCCCCCeecCCCCCeeeeccccCccCCCCCCC
Q 025700 210 LFGPNDWSCPMCGNINWAKRTKCNICNTNKPG 241 (249)
Q Consensus 210 ~~~~~dw~c~~c~~~n~~~r~~c~~C~~~~~~ 241 (249)
+++++.|.|+.|...|.+....|..|.+|||+
T Consensus 2 ~~~~G~W~C~~C~v~N~~~~~kC~aCet~Kpg 33 (34)
T 3gj5_B 2 PLGSGSWDCEVCLVQNKADSTKCIACESAKPG 33 (34)
T ss_dssp ----CCEECTTTCCEECSSCSBCTTTCCBC--
T ss_pred CCCCCceECCeeEeECccccCEEcccCCcCCC
Confidence 46789999999999999999999999999986
No 219
>3gj3_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1 PDB: 2gqe_A
Probab=98.01 E-value=3.1e-06 Score=49.16 Aligned_cols=31 Identities=39% Similarity=0.877 Sum_probs=26.5
Q ss_pred CCCCCeecCCCCCeeeeccccCccCCCCCCC
Q 025700 211 FGPNDWSCPMCGNINWAKRTKCNICNTNKPG 241 (249)
Q Consensus 211 ~~~~dw~c~~c~~~n~~~r~~c~~C~~~~~~ 241 (249)
.+++.|.|+.|-..|.+....|..|.+|||+
T Consensus 3 ~~~g~W~C~~C~~~N~~~~~kC~aC~tpkPg 33 (33)
T 3gj3_B 3 LGSGTWDCDTCLVQNKPEAVKCVACETPKPG 33 (33)
T ss_dssp ---CCEECTTTCCEECTTCSBCTTTCCBCC-
T ss_pred CCCCceeCCcccCCCccccCEEcccCCCCCC
Confidence 4678999999999999999999999999985
No 220
>3gj8_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.82A {Rattus norvegicus} PDB: 3gj4_B*
Probab=97.82 E-value=2.5e-06 Score=61.74 Aligned_cols=32 Identities=34% Similarity=0.865 Sum_probs=0.0
Q ss_pred CCCCeecCCCCCeeeeccccCccCCCCCCCCC
Q 025700 212 GPNDWSCPMCGNINWAKRTKCNICNTNKPGHN 243 (249)
Q Consensus 212 ~~~dw~c~~c~~~n~~~r~~c~~C~~~~~~~~ 243 (249)
+++||.|+.|.++||+.++.|..|.+||+...
T Consensus 5 ~~g~W~C~~C~~~N~~~~~~C~~C~~pkp~~~ 36 (92)
T 3gj8_B 5 SVGSWECPVCCVSNKAEDSRCVSCTSEKPGLV 36 (92)
T ss_dssp --------------------------------
T ss_pred CCcCCCCCcCCCEeccccceecccCCCCCCCC
Confidence 57899999999999999999999999998743
No 221
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.80 E-value=0.00016 Score=52.02 Aligned_cols=78 Identities=15% Similarity=0.156 Sum_probs=57.3
Q ss_pred CeEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCC--cccEEEEEeCCHHHHHHHHHHhCCceecCe
Q 025700 6 GSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNE--YKGDATVTYEDPHAALAAVEWFNNKDFHGN 83 (249)
Q Consensus 6 ~tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~--~rG~aFV~F~s~~~A~~Ai~~l~g~~~~g~ 83 (249)
.+|.|+.||+.+||+++.+.+.....+.. ...+.-+.+.+ .-.-|||.|.+.+++....+.++++.|.+.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~--------~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~ 73 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDY--------FEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDN 73 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEE--------EEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECT
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceE--------EEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcC
Confidence 47999999999999999999987765433 33333333222 234699999999999999999999988642
Q ss_pred -----EEEEEecc
Q 025700 84 -----LIGVFIAE 91 (249)
Q Consensus 84 -----~i~V~~a~ 91 (249)
...|++|-
T Consensus 74 kg~~~~a~VE~AP 86 (91)
T 1uw4_A 74 KGQEYPAIVEFAP 86 (91)
T ss_dssp TCCEEECEEEECS
T ss_pred CCCEeeeEEEEcC
Confidence 33566654
No 222
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.73 E-value=0.00026 Score=51.79 Aligned_cols=76 Identities=20% Similarity=0.280 Sum_probs=59.0
Q ss_pred CCCCeEEecCCCCCCCHHHHHHHHHhc-----CCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCC
Q 025700 3 MANGSVYVCNLPHGTDEDMLAEYFGTI-----GLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNN 77 (249)
Q Consensus 3 ~~~~tI~V~nLp~~~te~dL~~~F~~~-----G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g 77 (249)
+-..+|.|.|||+.+.++.|+-+|+.- |.|.. |+. .. .-|+|+|.+.+.|++.|+ -..
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~--------v~~--~~------~~AvItF~d~~va~rVL~-k~~ 68 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLS--------WQR--LG------CGGVLTFREPADAERVLA-QAD 68 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEE--------EEE--ET------TEEEEEESSHHHHHHHHT-CSC
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeE--------EEE--cC------CcEEEEEcChHHHHHHhc-CCc
Confidence 345789999999999999999999862 45554 333 22 369999999999999987 346
Q ss_pred ceecCeEEEEEecccCCC
Q 025700 78 KDFHGNLIGVFIAESRGK 95 (249)
Q Consensus 78 ~~~~g~~i~V~~a~~~~~ 95 (249)
+.|++..|.|....++..
T Consensus 69 H~L~~~~LsV~P~~~~~~ 86 (104)
T 2dhx_A 69 HELHGAQLSLRPAPPRAP 86 (104)
T ss_dssp CBSSSSBCEEEECCCCCC
T ss_pred ceecCeEEEEEcCCCCCc
Confidence 789999999987665543
No 223
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.73 E-value=0.00014 Score=53.34 Aligned_cols=77 Identities=12% Similarity=0.253 Sum_probs=62.1
Q ss_pred CCCeEEecCCCCCC-C----HHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCc
Q 025700 4 ANGSVYVCNLPHGT-D----EDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNK 78 (249)
Q Consensus 4 ~~~tI~V~nLp~~~-t----e~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~ 78 (249)
-.++|+|.||+.++ + .+.++++|.+|..+.. ...++.- .-..|.|.++++|.+|-..|++.
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~t--------F~~lkSF------RRirv~F~~~~~A~~AR~~Lh~~ 69 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTT--------FQYFKSF------KRVRINFSNPLSAADARLRLHKT 69 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCE--------EEEETTT------TEEEEECSSTTHHHHHHHTSTTS
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcc--------eeecCcc------eEEEEEeCChHHHHHHHHHhccc
Confidence 35789999998765 2 2567899999998866 3344332 25799999999999999999999
Q ss_pred eecCeEEEEEecccCC
Q 025700 79 DFHGNLIGVFIAESRG 94 (249)
Q Consensus 79 ~~~g~~i~V~~a~~~~ 94 (249)
.|+|+.|+|-++.+..
T Consensus 70 ~f~g~~~r~YFgq~~~ 85 (104)
T 1wey_A 70 EFLGKEMKLYFAQTLH 85 (104)
T ss_dssp EETTEECEEECCCCSS
T ss_pred eecCceeEEEecCCCC
Confidence 9999999999988543
No 224
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.71 E-value=0.00014 Score=52.60 Aligned_cols=54 Identities=20% Similarity=0.267 Sum_probs=46.3
Q ss_pred CCeEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHh
Q 025700 5 NGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWF 75 (249)
Q Consensus 5 ~~tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l 75 (249)
++.++| ..|+++...||.++|+.||.|. |+++.|- .|||.|.+++.|..||..+
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fggv~---------I~WidDT-------sAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGNIQ---------ISWIDDT-------SAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCSCC---------CEEEETT-------EEEEECSCHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCCEE---------EEEEcCC-------eEEEEecCHHHHHHHHHhc
Confidence 345666 9999999999999999999765 6677764 6999999999999999866
No 225
>2ebq_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.66 E-value=5.3e-05 Score=47.44 Aligned_cols=33 Identities=33% Similarity=0.595 Sum_probs=30.2
Q ss_pred CCCCCeecCCCCCeeeeccccCccCCCCCCCCC
Q 025700 211 FGPNDWSCPMCGNINWAKRTKCNICNTNKPGHN 243 (249)
Q Consensus 211 ~~~~dw~c~~c~~~n~~~r~~c~~C~~~~~~~~ 243 (249)
..++.|.|..|...|.+....|..|.+|+++..
T Consensus 7 ~~~g~W~C~~C~v~N~a~~~kC~aCetpKpgs~ 39 (47)
T 2ebq_A 7 GVIGTWDCDTCLVQNKPEAIKCVACETPKPGTC 39 (47)
T ss_dssp CCSSSEECSSSCCEECSSCSBCSSSCCBCSCSS
T ss_pred CCCCceECCeeeccCccCCceecCcCCCCCCCc
Confidence 367899999999999999999999999999764
No 226
>2ebr_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.61 E-value=8.4e-05 Score=46.60 Aligned_cols=35 Identities=34% Similarity=0.677 Sum_probs=31.2
Q ss_pred CCCCCCeecCCCCCeeeeccccCccCCCCCCCCCC
Q 025700 210 LFGPNDWSCPMCGNINWAKRTKCNICNTNKPGHNE 244 (249)
Q Consensus 210 ~~~~~dw~c~~c~~~n~~~r~~c~~C~~~~~~~~~ 244 (249)
.+..+.|.|..|...|.+....|..|.+|+++...
T Consensus 6 k~~~gsW~C~~C~v~N~a~~~kC~aC~~pkpg~~p 40 (47)
T 2ebr_A 6 SGPEGSWDCELCLVQNKADSTKCLACESAKPGTKS 40 (47)
T ss_dssp SSCCSSCCCSSSCCCCCSSCSBCSSSCCBCCCCCS
T ss_pred cCCCCeeECCeeecCCcCCcceecCcCCCCCCCcc
Confidence 34678999999999999999999999999998753
No 227
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.41 E-value=0.00015 Score=52.63 Aligned_cols=54 Identities=20% Similarity=0.255 Sum_probs=46.2
Q ss_pred CeEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhC
Q 025700 6 GSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFN 76 (249)
Q Consensus 6 ~tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~ 76 (249)
..++| +.|.++...||.++|+.||.|. |+++.|- .|||.|.+++.|..||..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fggv~---------I~WidDT-------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGNIQ---------ISWIDDT-------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEEEE---------EEEEETT-------EEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCCEE---------EEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 34566 9999999999999999999665 6677664 69999999999999999764
No 228
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=97.21 E-value=0.00072 Score=48.98 Aligned_cols=79 Identities=16% Similarity=0.173 Sum_probs=53.0
Q ss_pred CCeEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCC--cccEEEEEeCCHHHHHHHHHHhCCceecC
Q 025700 5 NGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNE--YKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (249)
Q Consensus 5 ~~tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~--~rG~aFV~F~s~~~A~~Ai~~l~g~~~~g 82 (249)
+-+|.|+.||+.+||+++.+.+...=.+.. ...+.-+.+-+ .-..|||.|.+.++.....+.++++.|.+
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~--------~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D 80 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDY--------FEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLD 80 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEE--------CCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEEC
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccce--------EEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEe
Confidence 568999999999999998877665432211 11111111111 12358999999999999999999998864
Q ss_pred -----eEEEEEecc
Q 025700 83 -----NLIGVFIAE 91 (249)
Q Consensus 83 -----~~i~V~~a~ 91 (249)
....|++|.
T Consensus 81 ~kg~~~~a~VE~AP 94 (97)
T 2l08_A 81 SKGLEYPAVVEFAP 94 (97)
T ss_dssp TTCCEEEEEEEECC
T ss_pred CCCCEeeeEEEecC
Confidence 234566653
No 229
>2d9g_A YY1-associated factor 2; ZF-ranbp domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.21 E-value=0.00045 Score=44.48 Aligned_cols=31 Identities=29% Similarity=0.655 Sum_probs=28.1
Q ss_pred CCCCeecCCCCCeeeeccccCccCCCCCCCC
Q 025700 212 GPNDWSCPMCGNINWAKRTKCNICNTNKPGH 242 (249)
Q Consensus 212 ~~~dw~c~~c~~~n~~~r~~c~~C~~~~~~~ 242 (249)
..+.|.|+.|-++|......|.+|..||+..
T Consensus 8 ~~~~W~C~~CT~~N~~~~~~C~~C~~pr~~s 38 (53)
T 2d9g_A 8 DEGYWDCSVCTFRNSAEAFKCMMCDVRKGTS 38 (53)
T ss_dssp CCCCEECSSSCCEECSSCSSCSSSCCCCCCC
T ss_pred CCCCcCCCCCccCCCCCCCccCCCCCcCCcc
Confidence 4568999999999999999999999999864
No 230
>2ebv_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.94 E-value=0.00053 Score=44.65 Aligned_cols=33 Identities=33% Similarity=0.641 Sum_probs=29.8
Q ss_pred CCCCCCCeecCCCCCeeeeccccCccCCCCCCC
Q 025700 209 GLFGPNDWSCPMCGNINWAKRTKCNICNTNKPG 241 (249)
Q Consensus 209 ~~~~~~dw~c~~c~~~n~~~r~~c~~C~~~~~~ 241 (249)
..+.++.|.|..|...|-+....|.-|.+|+|+
T Consensus 25 FK~~~GsWeC~~C~V~N~a~~~kC~ACetpKPG 57 (57)
T 2ebv_A 25 FKRPIGSWECSVCCVSNNAEDNKCVSCMSEKPG 57 (57)
T ss_dssp CCCCSSSCCCSSSCCCCCSSCSBCSSSCCBCCC
T ss_pred cCCCCCeeeCCeeEccCccCCceeeEcCCcCCC
Confidence 345679999999999999999999999999985
No 231
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.70 E-value=0.0044 Score=47.24 Aligned_cols=88 Identities=22% Similarity=0.281 Sum_probs=56.4
Q ss_pred CCCCCeEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeE--EEE---ecCCCC-CcccEEEEEeCCHHHHHHHHHHh
Q 025700 2 TMANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKV--WLY---RDKTTN-EYKGDATVTYEDPHAALAAVEWF 75 (249)
Q Consensus 2 ~~~~~tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V--~i~---~d~~tg-~~rG~aFV~F~s~~~A~~Ai~~l 75 (249)
......|.|-+.|++.+ ..|.+.|++||.|.++...-.+.. .+. ..+... ....+..|+|+++.+|++||. .
T Consensus 4 ~~~e~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~ 81 (132)
T 3p3d_A 4 SNGELAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-E 81 (132)
T ss_dssp ----CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-T
T ss_pred ccCceEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-h
Confidence 44567788889977655 557778999999977410000000 000 000000 124589999999999999998 8
Q ss_pred CCceecCeEEEEEecc
Q 025700 76 NNKDFHGNLIGVFIAE 91 (249)
Q Consensus 76 ~g~~~~g~~i~V~~a~ 91 (249)
|+..|.|..|-|.+..
T Consensus 82 NG~ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 82 NGAVFNGVLLGVIPYT 97 (132)
T ss_dssp TTCEETTEECEEEECC
T ss_pred CCeEeCcEEEEEEECC
Confidence 9999999988888754
No 232
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.60 E-value=0.01 Score=44.48 Aligned_cols=70 Identities=19% Similarity=0.196 Sum_probs=54.4
Q ss_pred CCeEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC-e
Q 025700 5 NGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG-N 83 (249)
Q Consensus 5 ~~tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~~~g-~ 83 (249)
..-|.|-+.|+.. .+.|...|++||.|.. .... ....+..|.|.+..+|++||. .|+..|.+ .
T Consensus 24 ~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~----------~~~~----~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~ 87 (119)
T 1wwh_A 24 DTWVTVFGFPQAS-ASYILLQFAQYGNILK----------HVMS----NTGNWMHIRYQSKLQARKALS-KDGRIFGESI 87 (119)
T ss_dssp GGEEEEECCCGGG-HHHHHHHHHTTSCEEE----------EEEC----SSSSEEEEEESSHHHHHHHHT-TTTCEETTTE
T ss_pred CCEEEEECCCHHH-HHHHHHHHHhhCcEEE----------eccC----CCCCeEEEEeCCHHHHHHHHH-hCCeEecCCE
Confidence 4568888998885 5678889999999976 2221 123599999999999999998 79998875 6
Q ss_pred EEEEEec
Q 025700 84 LIGVFIA 90 (249)
Q Consensus 84 ~i~V~~a 90 (249)
.|-|...
T Consensus 88 mIGV~p~ 94 (119)
T 1wwh_A 88 MIGVKPC 94 (119)
T ss_dssp ECEEEEC
T ss_pred EEEEEEC
Confidence 6777763
No 233
>2ebq_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.58 E-value=0.0013 Score=41.12 Aligned_cols=35 Identities=26% Similarity=0.419 Sum_probs=30.7
Q ss_pred cccCCCCCccCCCcCCCCCcccccccccccccCCCCC
Q 025700 142 TWQQDGDWMCPNTSCSNVNFAFRGVCNRCGTARPVGG 178 (249)
Q Consensus 142 ~~~r~Gdw~C~~~~c~~~nf~~r~~C~~C~~~~~~~~ 178 (249)
.....|.|.|. .|-..|.+....|+.|.+|++...
T Consensus 5 ~~~~~g~W~C~--~C~v~N~a~~~kC~aCetpKpgs~ 39 (47)
T 2ebq_A 5 SSGVIGTWDCD--TCLVQNKPEAIKCVACETPKPGTC 39 (47)
T ss_dssp CCCCSSSEECS--SSCCEECSSCSBCSSSCCBCSCSS
T ss_pred cCCCCCceECC--eeeccCccCCceecCcCCCCCCCc
Confidence 34467899999 999999999999999999998654
No 234
>2ebr_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.52 E-value=0.0039 Score=38.94 Aligned_cols=34 Identities=29% Similarity=0.564 Sum_probs=30.4
Q ss_pred cCCCCCccCCCcCCCCCcccccccccccccCCCCCC
Q 025700 144 QQDGDWMCPNTSCSNVNFAFRGVCNRCGTARPVGGP 179 (249)
Q Consensus 144 ~r~Gdw~C~~~~c~~~nf~~r~~C~~C~~~~~~~~~ 179 (249)
...|.|.|. .|-..|.+....|+.|.+|+|....
T Consensus 7 ~~~gsW~C~--~C~v~N~a~~~kC~aC~~pkpg~~p 40 (47)
T 2ebr_A 7 GPEGSWDCE--LCLVQNKADSTKCLACESAKPGTKS 40 (47)
T ss_dssp SCCSSCCCS--SSCCCCCSSCSBCSSSCCBCCCCCS
T ss_pred CCCCeeECC--eeecCCcCCcceecCcCCCCCCCcc
Confidence 456899999 9999999999999999999987653
No 235
>3gj5_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1
Probab=96.36 E-value=0.001 Score=38.66 Aligned_cols=30 Identities=33% Similarity=0.651 Sum_probs=25.5
Q ss_pred CCCCCccCCCcCCCCCcccccccccccccCCC
Q 025700 145 QDGDWMCPNTSCSNVNFAFRGVCNRCGTARPV 176 (249)
Q Consensus 145 r~Gdw~C~~~~c~~~nf~~r~~C~~C~~~~~~ 176 (249)
+.|.|.|. .|-..|.+....|..|.++||.
T Consensus 4 ~~G~W~C~--~C~v~N~~~~~kC~aCet~Kpg 33 (34)
T 3gj5_B 4 GSGSWDCE--VCLVQNKADSTKCIACESAKPG 33 (34)
T ss_dssp --CCEECT--TTCCEECSSCSBCTTTCCBC--
T ss_pred CCCceECC--eeEeECccccCEEcccCCcCCC
Confidence 57899999 9999999999999999999973
No 236
>2crc_A Ubiquitin conjugating enzyme 7 interacting protein 3; ZF-ranbp domain, hepatitis B virus X-associated protein 4, HBV associated factor 4; NMR {Homo sapiens}
Probab=96.31 E-value=0.0062 Score=38.89 Aligned_cols=30 Identities=33% Similarity=0.833 Sum_probs=27.6
Q ss_pred CCeecCCCCCeeeeccccCccCCCCCCCCC
Q 025700 214 NDWSCPMCGNINWAKRTKCNICNTNKPGHN 243 (249)
Q Consensus 214 ~dw~c~~c~~~n~~~r~~c~~C~~~~~~~~ 243 (249)
..|.|+.|-++|-.....|.+|..+++...
T Consensus 9 ~~W~Cp~CTf~N~p~~~~CemC~~prp~~~ 38 (52)
T 2crc_A 9 VGWQCPGCTFINKPTRPGCEMCCRARPEAY 38 (52)
T ss_dssp SSBCCTTTCCCBCTTCSSCSSSCCCCCTTS
T ss_pred CCccCCCcccccCCCCCeeCCCCCcCCccc
Confidence 479999999999999999999999998764
No 237
>1nj3_A NPL4; NZF domain, rubredoxin knuckle, beta-ribbon, zinc- finger, ubiquitin, protein binding; NMR {Rattus norvegicus} SCOP: g.41.11.1 PDB: 1q5w_A
Probab=96.31 E-value=0.0039 Score=35.35 Aligned_cols=26 Identities=23% Similarity=0.759 Sum_probs=24.6
Q ss_pred CCeecCCCCCeeeeccccCccCCCCC
Q 025700 214 NDWSCPMCGNINWAKRTKCNICNTNK 239 (249)
Q Consensus 214 ~dw~c~~c~~~n~~~r~~c~~C~~~~ 239 (249)
..|.|+.|-++|......|.+|..|+
T Consensus 5 ~~W~C~~CTf~N~~~~~~Ce~C~~~r 30 (31)
T 1nj3_A 5 AMWACQHCTFMNQPGTGHCEMCSLPR 30 (31)
T ss_dssp CCEECSSSCCEECSSCSSCSSSCCCC
T ss_pred ccccCCcccccCCCCCCccCCcCCCC
Confidence 47999999999999999999999987
No 238
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.25 E-value=0.0024 Score=58.91 Aligned_cols=54 Identities=15% Similarity=0.268 Sum_probs=39.1
Q ss_pred CeEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHH
Q 025700 6 GSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVE 73 (249)
Q Consensus 6 ~tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~ 73 (249)
++|+|. .|..+++.+|.++|++||.|.. +..++++ | -||.|||.+.+++.+++.
T Consensus 54 rsv~v~-~~~~~~~~~l~~y~~~~g~i~~--------~~~~~~~--g---~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 54 RTVLIH-CPEKISENKFLKYLSQFGPINN--------HFFYESF--G---LYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp TEEEEE-ECCC---CHHHHHHGGGSCCCC--------EEEECSS--S---EEEEEECC---CCHHHHS
T ss_pred ceEEEE-cCCCCCHHHHHHHHHhcCCcce--------EEEEccC--C---eEEEEEeCCHHHHHHHHh
Confidence 689997 7999999999999999999988 4444332 3 599999999999987764
No 239
>3gj3_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1 PDB: 2gqe_A
Probab=96.19 E-value=0.0016 Score=37.65 Aligned_cols=29 Identities=31% Similarity=0.679 Sum_probs=26.2
Q ss_pred CCCCCccCCCcCCCCCcccccccccccccCC
Q 025700 145 QDGDWMCPNTSCSNVNFAFRGVCNRCGTARP 175 (249)
Q Consensus 145 r~Gdw~C~~~~c~~~nf~~r~~C~~C~~~~~ 175 (249)
..+.|.|+ .|-..|.+....|..|.+|||
T Consensus 4 ~~g~W~C~--~C~~~N~~~~~kC~aC~tpkP 32 (33)
T 3gj3_B 4 GSGTWDCD--TCLVQNKPEAVKCVACETPKP 32 (33)
T ss_dssp --CCEECT--TTCCEECTTCSBCTTTCCBCC
T ss_pred CCCceeCC--cccCCCccccCEEcccCCCCC
Confidence 46899999 999999999999999999997
No 240
>3a9j_C Mitogen-activated protein kinase kinase kinase 7- interacting protein 2; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 2wwz_C 2wx0_C 2wx1_C 3a9k_C
Probab=96.16 E-value=0.004 Score=36.06 Aligned_cols=27 Identities=22% Similarity=0.772 Sum_probs=25.3
Q ss_pred CCeecCCCCCeeeeccccCccCCCCCC
Q 025700 214 NDWSCPMCGNINWAKRTKCNICNTNKP 240 (249)
Q Consensus 214 ~dw~c~~c~~~n~~~r~~c~~C~~~~~ 240 (249)
..|.|+.|-++|-.....|.+|..+++
T Consensus 7 ~~W~C~~CT~~N~~~~~~Ce~C~~~r~ 33 (34)
T 3a9j_C 7 AQWNCTACTFLNHPALIRCEQCEMPRH 33 (34)
T ss_dssp CCEECTTTCCEECTTCSBCTTTCCBSC
T ss_pred CcCCCCCCccccCCCCCeeCCCCCcCc
Confidence 479999999999999999999999986
No 241
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=95.95 E-value=0.0062 Score=47.23 Aligned_cols=34 Identities=21% Similarity=0.206 Sum_probs=29.2
Q ss_pred EEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCc
Q 025700 43 VWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNK 78 (249)
Q Consensus 43 V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~ 78 (249)
++|+++.. +++||+||+|.++++|++|++.+++.
T Consensus 3 ~kl~ln~~--~~~G~~fV~f~~~~~A~~al~~~~~~ 36 (158)
T 2kn4_A 3 YKLILNGK--TLKGETTTEAVDAATAEKVFKQYAND 36 (158)
T ss_dssp EEEEEECS--SCEEEEEEECSSHHHHHHHHHHHHHH
T ss_pred EEEEecCc--cccchhHHHHHHHHhHHHHHHhhccc
Confidence 56788874 68999999999999999999887754
No 242
>2c6a_A Ubiquitin-protein ligase E3 MDM2; zinc finger, human MDM2, phosphorylation, alternative splicing, metal-binding, nuclear protein, proto- oncogene; NMR {Homo sapiens} SCOP: g.41.11.1 PDB: 2c6b_A
Probab=95.74 E-value=0.0061 Score=37.48 Aligned_cols=28 Identities=25% Similarity=0.695 Sum_probs=25.8
Q ss_pred CCeecCCCCCeeeeccccCccCCCCCCC
Q 025700 214 NDWSCPMCGNINWAKRTKCNICNTNKPG 241 (249)
Q Consensus 214 ~dw~c~~c~~~n~~~r~~c~~C~~~~~~ 241 (249)
+.|+|..|...|...+..|++|-+-|.+
T Consensus 12 D~WkC~~C~~~N~Pl~r~C~rCw~LRk~ 39 (46)
T 2c6a_A 12 DYWKCTSCNEMNPPLPSHCNRCWALREN 39 (46)
T ss_dssp GCEECTTTCCEECSSCSSCTTTCCCCSS
T ss_pred ceEecccccccCCCccchhhHHHhhccc
Confidence 6799999999999999999999988765
No 243
>3b08_B Ranbp-type and C3HC4-type zinc finger-containing; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Mus musculus} PDB: 3b0a_B*
Probab=95.56 E-value=0.011 Score=39.27 Aligned_cols=29 Identities=34% Similarity=0.883 Sum_probs=27.1
Q ss_pred CCeecCCCCCeeeeccccCccCCCCCCCC
Q 025700 214 NDWSCPMCGNINWAKRTKCNICNTNKPGH 242 (249)
Q Consensus 214 ~dw~c~~c~~~n~~~r~~c~~C~~~~~~~ 242 (249)
..|.|+.|-++|-.....|.+|.++++..
T Consensus 7 ~~W~CP~CTf~N~p~~p~CEmC~~prp~~ 35 (64)
T 3b08_B 7 VGWQCPGCTFINKPTRPGCEMCCRARPET 35 (64)
T ss_dssp CSEECTTTCCEECTTCSBCTTTCCBCCSS
T ss_pred CCCcCCCccccCCCCCCccCcCCCCCCcc
Confidence 47999999999999999999999999875
No 244
>2d9g_A YY1-associated factor 2; ZF-ranbp domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.40 E-value=0.0094 Score=38.20 Aligned_cols=32 Identities=25% Similarity=0.505 Sum_probs=28.5
Q ss_pred CCCCCccCCCcCCCCCcccccccccccccCCCCC
Q 025700 145 QDGDWMCPNTSCSNVNFAFRGVCNRCGTARPVGG 178 (249)
Q Consensus 145 r~Gdw~C~~~~c~~~nf~~r~~C~~C~~~~~~~~ 178 (249)
..+.|.|+ .|.+.|......|..|..+|+...
T Consensus 8 ~~~~W~C~--~CT~~N~~~~~~C~~C~~pr~~s~ 39 (53)
T 2d9g_A 8 DEGYWDCS--VCTFRNSAEAFKCMMCDVRKGTST 39 (53)
T ss_dssp CCCCEECS--SSCCEECSSCSSCSSSCCCCCCCC
T ss_pred CCCCcCCC--CCccCCCCCCCccCCCCCcCCccc
Confidence 45689999 999999999999999999998643
No 245
>2cr8_A MDM4 protein; ZF-ranbp domain, P53-binding protein MDM4, MDM2-like P53-binding DE protein, MDMX protein, double minute 4 protein; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=94.90 E-value=0.034 Score=34.86 Aligned_cols=29 Identities=21% Similarity=0.639 Sum_probs=25.4
Q ss_pred CCCeecCCCCCeeeeccccCccCCCCCCC
Q 025700 213 PNDWSCPMCGNINWAKRTKCNICNTNKPG 241 (249)
Q Consensus 213 ~~dw~c~~c~~~n~~~r~~c~~C~~~~~~ 241 (249)
.+-|.|..|...|-.-...|.+|-+-|.+
T Consensus 9 eD~WkC~~C~k~N~Pl~ryC~rCwaLRk~ 37 (53)
T 2cr8_A 9 EDEWQCTECKKFNSPSKRYCFRCWALRKD 37 (53)
T ss_dssp SCCEECSSSCCEECSSCCBCTTTCCBCCC
T ss_pred cceeecccccccCCCccchhHHHHHhhcc
Confidence 45699999999999999999999987764
No 246
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=94.66 E-value=0.01 Score=45.63 Aligned_cols=41 Identities=20% Similarity=0.173 Sum_probs=36.8
Q ss_pred CCcccEEEEEeCCHHHHHHHHHHh-CCceecCeEEEEEecccC
Q 025700 52 NEYKGDATVTYEDPHAALAAVEWF-NNKDFHGNLIGVFIAESR 93 (249)
Q Consensus 52 g~~rG~aFV~F~s~~~A~~Ai~~l-~g~~~~g~~i~V~~a~~~ 93 (249)
.+.+|+++|+|.+.++|++|++.+ ++..+.| .|.+.++..+
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~ 51 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKT 51 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTE
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCc
Confidence 467899999999999999999999 9999999 9999987653
No 247
>2crc_A Ubiquitin conjugating enzyme 7 interacting protein 3; ZF-ranbp domain, hepatitis B virus X-associated protein 4, HBV associated factor 4; NMR {Homo sapiens}
Probab=94.02 E-value=0.047 Score=34.73 Aligned_cols=30 Identities=37% Similarity=0.816 Sum_probs=27.3
Q ss_pred CCCCccCCCcCCCCCcccccccccccccCCCC
Q 025700 146 DGDWMCPNTSCSNVNFAFRGVCNRCGTARPVG 177 (249)
Q Consensus 146 ~Gdw~C~~~~c~~~nf~~r~~C~~C~~~~~~~ 177 (249)
...|.|+ .|.+.|......|..|..+++..
T Consensus 8 ~~~W~Cp--~CTf~N~p~~~~CemC~~prp~~ 37 (52)
T 2crc_A 8 PVGWQCP--GCTFINKPTRPGCEMCCRARPEA 37 (52)
T ss_dssp SSSBCCT--TTCCCBCTTCSSCSSSCCCCCTT
T ss_pred CCCccCC--CcccccCCCCCeeCCCCCcCCcc
Confidence 3489999 99999999999999999999865
No 248
>3a9j_C Mitogen-activated protein kinase kinase kinase 7- interacting protein 2; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 2wwz_C 2wx0_C 2wx1_C 3a9k_C
Probab=93.66 E-value=0.029 Score=32.32 Aligned_cols=28 Identities=25% Similarity=0.700 Sum_probs=25.8
Q ss_pred CCCCccCCCcCCCCCcccccccccccccCC
Q 025700 146 DGDWMCPNTSCSNVNFAFRGVCNRCGTARP 175 (249)
Q Consensus 146 ~Gdw~C~~~~c~~~nf~~r~~C~~C~~~~~ 175 (249)
...|.|+ .|.+.|......|..|..+|+
T Consensus 6 ~~~W~C~--~CT~~N~~~~~~Ce~C~~~r~ 33 (34)
T 3a9j_C 6 GAQWNCT--ACTFLNHPALIRCEQCEMPRH 33 (34)
T ss_dssp CCCEECT--TTCCEECTTCSBCTTTCCBSC
T ss_pred CCcCCCC--CCccccCCCCCeeCCCCCcCc
Confidence 4589999 999999999999999999986
No 249
>1nj3_A NPL4; NZF domain, rubredoxin knuckle, beta-ribbon, zinc- finger, ubiquitin, protein binding; NMR {Rattus norvegicus} SCOP: g.41.11.1 PDB: 1q5w_A
Probab=93.58 E-value=0.031 Score=31.50 Aligned_cols=27 Identities=30% Similarity=0.754 Sum_probs=24.9
Q ss_pred CCCCccCCCcCCCCCcccccccccccccC
Q 025700 146 DGDWMCPNTSCSNVNFAFRGVCNRCGTAR 174 (249)
Q Consensus 146 ~Gdw~C~~~~c~~~nf~~r~~C~~C~~~~ 174 (249)
...|.|+ .|.+.|......|..|..+|
T Consensus 4 ~~~W~C~--~CTf~N~~~~~~Ce~C~~~r 30 (31)
T 1nj3_A 4 SAMWACQ--HCTFMNQPGTGHCEMCSLPR 30 (31)
T ss_dssp SCCEECS--SSCCEECSSCSSCSSSCCCC
T ss_pred CccccCC--cccccCCCCCCccCCcCCCC
Confidence 3589999 99999999999999999987
No 250
>2c6a_A Ubiquitin-protein ligase E3 MDM2; zinc finger, human MDM2, phosphorylation, alternative splicing, metal-binding, nuclear protein, proto- oncogene; NMR {Homo sapiens} SCOP: g.41.11.1 PDB: 2c6b_A
Probab=93.20 E-value=0.026 Score=34.67 Aligned_cols=28 Identities=36% Similarity=0.826 Sum_probs=25.8
Q ss_pred CCCCccCCCcCCCCCcccccccccccccCC
Q 025700 146 DGDWMCPNTSCSNVNFAFRGVCNRCGTARP 175 (249)
Q Consensus 146 ~Gdw~C~~~~c~~~nf~~r~~C~~C~~~~~ 175 (249)
++.|.|. +|...|+.....|++|-+-|+
T Consensus 11 ~D~WkC~--~C~~~N~Pl~r~C~rCw~LRk 38 (46)
T 2c6a_A 11 ADYWKCT--SCNEMNPPLPSHCNRCWALRE 38 (46)
T ss_dssp GGCEECT--TTCCEECSSCSSCTTTCCCCS
T ss_pred cceEecc--cccccCCCccchhhHHHhhcc
Confidence 4789999 999999999999999998875
No 251
>2ebv_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.79 E-value=0.1 Score=33.72 Aligned_cols=31 Identities=29% Similarity=0.636 Sum_probs=28.3
Q ss_pred ccCCCCCccCCCcCCCCCcccccccccccccCC
Q 025700 143 WQQDGDWMCPNTSCSNVNFAFRGVCNRCGTARP 175 (249)
Q Consensus 143 ~~r~Gdw~C~~~~c~~~nf~~r~~C~~C~~~~~ 175 (249)
....+.|.|. .|-..|-+....|.-|.+|+|
T Consensus 26 K~~~GsWeC~--~C~V~N~a~~~kC~ACetpKP 56 (57)
T 2ebv_A 26 KRPIGSWECS--VCCVSNNAEDNKCVSCMSEKP 56 (57)
T ss_dssp CCCSSSCCCS--SSCCCCCSSCSBCSSSCCBCC
T ss_pred CCCCCeeeCC--eeEccCccCCceeeEcCCcCC
Confidence 3457999999 999999999999999999997
No 252
>3b08_B Ranbp-type and C3HC4-type zinc finger-containing; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Mus musculus} PDB: 3b0a_B*
Probab=92.29 E-value=0.043 Score=36.40 Aligned_cols=30 Identities=37% Similarity=0.799 Sum_probs=27.4
Q ss_pred CCCCccCCCcCCCCCcccccccccccccCCCC
Q 025700 146 DGDWMCPNTSCSNVNFAFRGVCNRCGTARPVG 177 (249)
Q Consensus 146 ~Gdw~C~~~~c~~~nf~~r~~C~~C~~~~~~~ 177 (249)
...|.|+ .|.++|......|..|..+++..
T Consensus 6 ~~~W~CP--~CTf~N~p~~p~CEmC~~prp~~ 35 (64)
T 3b08_B 6 PVGWQCP--GCTFINKPTRPGCEMCCRARPET 35 (64)
T ss_dssp CCSEECT--TTCCEECTTCSBCTTTCCBCCSS
T ss_pred CCCCcCC--CccccCCCCCCccCcCCCCCCcc
Confidence 3589999 99999999999999999999865
No 253
>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting, protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54
Probab=91.64 E-value=0.033 Score=52.42 Aligned_cols=84 Identities=19% Similarity=0.391 Sum_probs=0.0
Q ss_pred CCCCCccCCCcCCCCCcc---------cccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 025700 145 QDGDWMCPNTSCSNVNFA---------FRGVCNRCGTARPVGGPGAGGRAGGRGRGRAGNESGSQGRQIGAATGLFGPND 215 (249)
Q Consensus 145 r~Gdw~C~~~~c~~~nf~---------~r~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 215 (249)
....|+|+ .|.+.|-. ....|--|+.+.+............ -+.. .. ... ... -...+
T Consensus 114 ~~~tWvC~--ICsfsN~~~~~f~~~~~~~p~C~~CGi~p~~~~~k~~i~~~~---~~~~-~~--~~~--~~~---~~~~~ 180 (566)
T 1w7p_D 114 VVSTWVCP--ICMVSNETQGEFTKDTLPTPICINCGVPADYELTKSSINCSN---AIDP-NA--NPQ--NQF---GVNSE 180 (566)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccceecc--ccccCCCCCCCCCcccCCCCcccccCCCCchhhhhhhhhccc---cCCC-cc--cCc--ccc---ccccC
Confidence 46799999 99999875 3445999999987554222111000 0000 00 000 000 01235
Q ss_pred eecCCCCCeeeeccccCccCCCCCCC
Q 025700 216 WSCPMCGNINWAKRTKCNICNTNKPG 241 (249)
Q Consensus 216 w~c~~c~~~n~~~r~~c~~C~~~~~~ 241 (249)
-.||.|-++|-..=..|.+|+++.+.
T Consensus 181 ~~CP~CTF~NHPsl~~CEiCg~~L~~ 206 (566)
T 1w7p_D 181 NICPACTFANHPQIGNCEICGHRLPN 206 (566)
T ss_dssp --------------------------
T ss_pred CCCCcccccCChhhhcccccCCcCCC
Confidence 67999999999999999999999986
No 254
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=91.27 E-value=0.41 Score=44.54 Aligned_cols=55 Identities=20% Similarity=0.261 Sum_probs=44.5
Q ss_pred CCeEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhC
Q 025700 5 NGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFN 76 (249)
Q Consensus 5 ~~tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~ 76 (249)
+..++|+ +|..+...+|.++|+.||.+. |+++.+. .|||.|.+.+.|..++..+.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v~---------V~widdt-------~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNIQ---------ISWIDDT-------SAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCCE---------EEECSSS-------EEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCEE---------EEEEcCC-------eEEEEECCHHHHHHHHHHHH
Confidence 3456665 899999999999999999654 5555443 69999999999999999875
No 255
>3gj7_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.93A {Rattus norvegicus} PDB: 2k0c_A 3ch5_B* 3gj6_B*
Probab=89.57 E-value=0.11 Score=37.51 Aligned_cols=30 Identities=30% Similarity=0.616 Sum_probs=26.3
Q ss_pred cCCCCCccCCCcCCCCCcccccccccccccCC
Q 025700 144 QQDGDWMCPNTSCSNVNFAFRGVCNRCGTARP 175 (249)
Q Consensus 144 ~r~Gdw~C~~~~c~~~nf~~r~~C~~C~~~~~ 175 (249)
...+.|.|. .|-..|.+....|..|.++||
T Consensus 68 ~~~g~W~C~--~C~~~N~~~~~~C~aC~tpkP 97 (98)
T 3gj7_B 68 PAIGTWDCD--TCLVQNKPEAVKCVACETPKP 97 (98)
T ss_dssp ---CCEECT--TTCCEECTTCSBCTTTCCBCC
T ss_pred CCCCcccCC--cCcCCChhhcceecccCCCCC
Confidence 357899999 999999999999999999997
No 256
>2cr8_A MDM4 protein; ZF-ranbp domain, P53-binding protein MDM4, MDM2-like P53-binding DE protein, MDMX protein, double minute 4 protein; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=86.26 E-value=0.49 Score=29.60 Aligned_cols=29 Identities=28% Similarity=0.763 Sum_probs=26.1
Q ss_pred CCCCCccCCCcCCCCCcccccccccccccCC
Q 025700 145 QDGDWMCPNTSCSNVNFAFRGVCNRCGTARP 175 (249)
Q Consensus 145 r~Gdw~C~~~~c~~~nf~~r~~C~~C~~~~~ 175 (249)
-++-|.|. .|...|--....|++|-+-|.
T Consensus 8 ~eD~WkC~--~C~k~N~Pl~ryC~rCwaLRk 36 (53)
T 2cr8_A 8 SEDEWQCT--ECKKFNSPSKRYCFRCWALRK 36 (53)
T ss_dssp CSCCEECS--SSCCEECSSCCBCTTTCCBCC
T ss_pred Ccceeecc--cccccCCCccchhHHHHHhhc
Confidence 46789999 999999999999999988875
No 257
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=82.49 E-value=0.64 Score=36.84 Aligned_cols=27 Identities=26% Similarity=0.735 Sum_probs=21.9
Q ss_pred CCeecCCCCCeee-eccccCccCCCCCC
Q 025700 214 NDWSCPMCGNINW-AKRTKCNICNTNKP 240 (249)
Q Consensus 214 ~dw~c~~c~~~n~-~~r~~c~~C~~~~~ 240 (249)
.-|.|+.|+++-. .-+..|+.|+.|+.
T Consensus 137 ~~~~C~~CG~i~~~~~p~~CP~Cg~~~~ 164 (170)
T 3pwf_A 137 KVYICPICGYTAVDEAPEYCPVCGAPKE 164 (170)
T ss_dssp CEEECTTTCCEEESCCCSBCTTTCCBGG
T ss_pred CeeEeCCCCCeeCCCCCCCCCCCCCCHH
Confidence 4699999999865 34569999999874
No 258
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=80.45 E-value=0.8 Score=36.86 Aligned_cols=26 Identities=27% Similarity=0.768 Sum_probs=21.5
Q ss_pred CeecCCCCCeee--eccccCccCCCCCC
Q 025700 215 DWSCPMCGNINW--AKRTKCNICNTNKP 240 (249)
Q Consensus 215 dw~c~~c~~~n~--~~r~~c~~C~~~~~ 240 (249)
-|.|+.|+++-. ..+..|+.|+.|+.
T Consensus 155 ~~~C~~CG~~~~g~~~p~~CP~C~~~k~ 182 (191)
T 1lko_A 155 KWRCRNCGYVHEGTGAPELCPACAHPKA 182 (191)
T ss_dssp EEEETTTCCEEEEEECCSBCTTTCCBGG
T ss_pred eEEECCCCCEeeCCCCCCCCCCCcCCHH
Confidence 599999999964 34669999999865
No 259
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=79.92 E-value=0.92 Score=27.89 Aligned_cols=10 Identities=30% Similarity=0.929 Sum_probs=5.7
Q ss_pred eecCCCCCee
Q 025700 216 WSCPMCGNIN 225 (249)
Q Consensus 216 w~c~~c~~~n 225 (249)
|.|..|+++.
T Consensus 5 y~C~vCGyvy 14 (46)
T 6rxn_A 5 YVCNVCGYEY 14 (46)
T ss_dssp EEETTTCCEE
T ss_pred EECCCCCeEE
Confidence 5555565554
No 260
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=79.40 E-value=5.9 Score=26.25 Aligned_cols=73 Identities=12% Similarity=0.093 Sum_probs=43.0
Q ss_pred eEEecC-CCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeEE
Q 025700 7 SVYVCN-LPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGNLI 85 (249)
Q Consensus 7 tI~V~n-Lp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l~g~~~~g~~i 85 (249)
+|||.. --..++..+|..++..-+.+.... .=+|+|. + .|.||+.... .|+.+++.|+...+.++.+
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~---IG~I~i~-d-------~~s~v~v~~~-~~~~~~~~l~~~~i~g~~~ 69 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADD---IGIITIM-D-------NASYVEILNG-KGPHVLKVMKNTTVKGKQL 69 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGG---EEEEEEC-S-------SCEEEEECTT-CHHHHHHHHTTCCC---CC
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhh---ccEEEEe-C-------CcEEEEECHH-HHHHHHHHhccccCcCceE
Confidence 456632 235677788888888666555432 0013332 2 2789998764 4777888899999999999
Q ss_pred EEEecc
Q 025700 86 GVFIAE 91 (249)
Q Consensus 86 ~V~~a~ 91 (249)
.|+.++
T Consensus 70 ~v~~~~ 75 (76)
T 2g0c_A 70 KVNKAN 75 (76)
T ss_dssp CEEECC
T ss_pred EEEECC
Confidence 998764
No 261
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=73.10 E-value=1.3 Score=28.24 Aligned_cols=13 Identities=54% Similarity=1.446 Sum_probs=11.0
Q ss_pred CCCCeecCCCCCe
Q 025700 212 GPNDWSCPMCGNI 224 (249)
Q Consensus 212 ~~~dw~c~~c~~~ 224 (249)
-+.||.||.|+..
T Consensus 33 lP~dw~CP~Cg~~ 45 (54)
T 4rxn_A 33 IPDDWVCPLCGVG 45 (54)
T ss_dssp SCTTCBCTTTCCB
T ss_pred CCCCCcCcCCCCc
Confidence 4789999999975
No 262
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=72.74 E-value=2.2 Score=27.19 Aligned_cols=12 Identities=58% Similarity=1.461 Sum_probs=8.0
Q ss_pred CCCCeecCCCCC
Q 025700 212 GPNDWSCPMCGN 223 (249)
Q Consensus 212 ~~~dw~c~~c~~ 223 (249)
-+.||.|+.|+.
T Consensus 33 lP~dw~CP~Cga 44 (55)
T 2v3b_B 33 IPADWVCPDCGV 44 (55)
T ss_dssp SCTTCCCTTTCC
T ss_pred CCCCCcCCCCCC
Confidence 356777777765
No 263
>4b2u_A S67; toxin, ICK; NMR {Sicarius dolichocephalus}
Probab=71.93 E-value=0.94 Score=25.16 Aligned_cols=12 Identities=42% Similarity=1.304 Sum_probs=9.9
Q ss_pred ccCCCCCccCCCcC
Q 025700 143 WQQDGDWMCPNTSC 156 (249)
Q Consensus 143 ~~r~Gdw~C~~~~c 156 (249)
.+|.|||-|. +|
T Consensus 13 npregdwcch--kc 24 (36)
T 4b2u_A 13 NPREGDWCCH--KC 24 (36)
T ss_dssp CGGGCCSSSS--EE
T ss_pred CCCccCeeee--cc
Confidence 3578999998 77
No 264
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=71.71 E-value=2 Score=34.93 Aligned_cols=27 Identities=37% Similarity=0.725 Sum_probs=21.6
Q ss_pred CCeecCCCCCeeee-ccccCccCCCCCC
Q 025700 214 NDWSCPMCGNINWA-KRTKCNICNTNKP 240 (249)
Q Consensus 214 ~dw~c~~c~~~n~~-~r~~c~~C~~~~~ 240 (249)
.-|.|..|+++... -+..|+.|+.|+.
T Consensus 170 ~~~~C~~CG~i~~g~~p~~CP~C~~~k~ 197 (202)
T 1yuz_A 170 KFHLCPICGYIHKGEDFEKCPICFRPKD 197 (202)
T ss_dssp CEEECSSSCCEEESSCCSBCTTTCCBGG
T ss_pred cEEEECCCCCEEcCcCCCCCCCCCCChH
Confidence 36999999999653 2468999999875
No 265
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=71.29 E-value=2.3 Score=29.37 Aligned_cols=27 Identities=22% Similarity=0.415 Sum_probs=18.6
Q ss_pred CCeecCCCCCeeee-----------------ccc--cCccCCCCCC
Q 025700 214 NDWSCPMCGNINWA-----------------KRT--KCNICNTNKP 240 (249)
Q Consensus 214 ~dw~c~~c~~~n~~-----------------~r~--~c~~C~~~~~ 240 (249)
.-|.|..|+++... -.. .|..|+++|.
T Consensus 26 ~~y~C~vCGyvYD~~~Gdp~~gI~pGT~fedlPddW~CPvCga~K~ 71 (81)
T 2kn9_A 26 KLFRCIQCGFEYDEALGWPEDGIAAGTRWDDIPDDWSCPDCGAAKS 71 (81)
T ss_dssp CEEEETTTCCEEETTTCBTTTTBCTTCCTTTSCTTCCCTTTCCCGG
T ss_pred ceEEeCCCCEEEcCCcCCcccCcCCCCChhHCCCCCcCCCCCCCHH
Confidence 45888888888642 122 6888888765
No 266
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=68.55 E-value=1 Score=39.85 Aligned_cols=17 Identities=12% Similarity=-0.017 Sum_probs=0.0
Q ss_pred CCCCCCcccCCCCCccC
Q 025700 136 GDAVGKTWQQDGDWMCP 152 (249)
Q Consensus 136 gg~~~~~~~r~Gdw~C~ 152 (249)
|+.++......++|-|.
T Consensus 302 ~~~~~~~~~~~~~~~~~ 318 (358)
T 2pk2_A 302 GGVPGQNTGGQEARPNY 318 (358)
T ss_dssp -----------------
T ss_pred CCCCCccCCCCCCccce
Confidence 33445666778899887
No 267
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=68.31 E-value=1.9 Score=27.17 Aligned_cols=13 Identities=54% Similarity=1.546 Sum_probs=10.9
Q ss_pred CCCCeecCCCCCe
Q 025700 212 GPNDWSCPMCGNI 224 (249)
Q Consensus 212 ~~~dw~c~~c~~~ 224 (249)
-+.||.|+.|+..
T Consensus 32 lP~dw~CP~Cg~~ 44 (52)
T 1yk4_A 32 LPDDWVCPLCGAP 44 (52)
T ss_dssp SCTTCBCTTTCCB
T ss_pred CCCCCcCCCCCCC
Confidence 4789999999874
No 268
>2j9u_B VPS36, vacuolar protein sorting-associated protein 36; zinc-finger, metal-binding, protein transport; 2.00A {Saccharomyces cerevisiae} SCOP: g.41.11.1
Probab=67.25 E-value=3.9 Score=27.75 Aligned_cols=29 Identities=24% Similarity=0.562 Sum_probs=19.3
Q ss_pred CCCCeecCCCCCeeeeccc---------cCccCCCCCC
Q 025700 212 GPNDWSCPMCGNINWAKRT---------KCNICNTNKP 240 (249)
Q Consensus 212 ~~~dw~c~~c~~~n~~~r~---------~c~~C~~~~~ 240 (249)
...+|.|+.|.+.|-..-. .|..|+++.+
T Consensus 14 ~~~tWVCpICsfsN~v~s~fdp~~~~lPpC~aCGIkP~ 51 (76)
T 2j9u_B 14 VVSTWVCPICMVSNETQGEFTKDTLPTPICINCGVPAD 51 (76)
T ss_dssp -CEEEECTTTCCEEEESSCCCTTCSSCCBCTTTCCBCC
T ss_pred cccceECccccccCcCccccCCCCCCCCcccccCccCC
Confidence 3468999999988864433 3666666543
No 269
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=64.71 E-value=5 Score=25.13 Aligned_cols=11 Identities=64% Similarity=2.065 Sum_probs=8.0
Q ss_pred CCCeecCCCCC
Q 025700 213 PNDWSCPMCGN 223 (249)
Q Consensus 213 ~~dw~c~~c~~ 223 (249)
+.||.|+.|+.
T Consensus 34 P~dw~CP~Cg~ 44 (52)
T 1e8j_A 34 PDDWACPVCGA 44 (52)
T ss_dssp CTTCCCSSSCC
T ss_pred CCCCcCCCCCC
Confidence 67777777775
No 270
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=64.13 E-value=3.3 Score=27.74 Aligned_cols=13 Identities=23% Similarity=0.721 Sum_probs=8.2
Q ss_pred CCCCeecCCCCCe
Q 025700 212 GPNDWSCPMCGNI 224 (249)
Q Consensus 212 ~~~dw~c~~c~~~ 224 (249)
-+.||.||.|+..
T Consensus 37 lPddw~CP~Cga~ 49 (70)
T 1dx8_A 37 LSDSFMCPACRSP 49 (70)
T ss_dssp SCTTCBCTTTCCB
T ss_pred CCCCCcCCCCCCC
Confidence 3567777777653
No 271
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=63.17 E-value=4.6 Score=29.24 Aligned_cols=28 Identities=18% Similarity=0.539 Sum_probs=22.6
Q ss_pred CCeecCCCCCeee----eccccCccCCCCCCCC
Q 025700 214 NDWSCPMCGNINW----AKRTKCNICNTNKPGH 242 (249)
Q Consensus 214 ~dw~c~~c~~~n~----~~r~~c~~C~~~~~~~ 242 (249)
-+-.|..|++. | ..+..|.+|+...-+.
T Consensus 66 ~p~~C~~CG~~-F~~~~~kPsrCP~CkSe~Ie~ 97 (105)
T 2gmg_A 66 KPAQCRKCGFV-FKAEINIPSRCPKCKSEWIEE 97 (105)
T ss_dssp CCCBBTTTCCB-CCCCSSCCSSCSSSCCCCBCC
T ss_pred ECcChhhCcCe-ecccCCCCCCCcCCCCCccCC
Confidence 45679999998 8 5778999999876554
No 272
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=62.43 E-value=5 Score=25.12 Aligned_cols=25 Identities=28% Similarity=0.619 Sum_probs=17.7
Q ss_pred CCeecCCCCCeeeeccccCccCCCC
Q 025700 214 NDWSCPMCGNINWAKRTKCNICNTN 238 (249)
Q Consensus 214 ~dw~c~~c~~~n~~~r~~c~~C~~~ 238 (249)
...+|+.|+..|-..-..|.+|+..
T Consensus 13 ~k~iCpkC~a~~~~gaw~CrKCG~~ 37 (51)
T 3j21_g 13 KKYVCLRCGATNPWGAKKCRKCGYK 37 (51)
T ss_dssp SEEECTTTCCEECTTCSSCSSSSSC
T ss_pred CCccCCCCCCcCCCCceecCCCCCc
Confidence 3467777777777777777777754
No 273
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=62.32 E-value=3.9 Score=28.60 Aligned_cols=27 Identities=30% Similarity=0.638 Sum_probs=18.3
Q ss_pred CCeecCCCCCeeee-----------------ccc--cCccCCCCCC
Q 025700 214 NDWSCPMCGNINWA-----------------KRT--KCNICNTNKP 240 (249)
Q Consensus 214 ~dw~c~~c~~~n~~-----------------~r~--~c~~C~~~~~ 240 (249)
.-|.|..|+++... -.. .|..|++++.
T Consensus 34 ~~y~C~vCGyvYD~~~Gdp~~gI~pGT~fedlPddW~CPvCga~K~ 79 (87)
T 1s24_A 34 LKWICITCGHIYDEALGDEAEGFTPGTRFEDIPDDWCCPDCGATKE 79 (87)
T ss_dssp CEEEETTTTEEEETTSCCTTTTCCSCCCGGGCCTTCCCSSSCCCGG
T ss_pred ceEECCCCCeEecCCcCCcccCcCCCCChhHCCCCCCCCCCCCCHH
Confidence 45888888877542 112 6888888764
No 274
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=57.76 E-value=6.5 Score=28.81 Aligned_cols=29 Identities=17% Similarity=0.424 Sum_probs=22.3
Q ss_pred CCCCeecCCCCCeee--eccc-cCccCCCCCC
Q 025700 212 GPNDWSCPMCGNINW--AKRT-KCNICNTNKP 240 (249)
Q Consensus 212 ~~~dw~c~~c~~~n~--~~r~-~c~~C~~~~~ 240 (249)
.+..|.|..|+..-- .... .|+.|+.+..
T Consensus 70 ~p~~~~C~~CG~~~e~~~~~~~~CP~Cgs~~~ 101 (119)
T 2kdx_A 70 EKVELECKDCSHVFKPNALDYGVCEKCHSKNV 101 (119)
T ss_dssp ECCEEECSSSSCEECSCCSTTCCCSSSSSCCC
T ss_pred ccceEEcCCCCCEEeCCCCCCCcCccccCCCc
Confidence 467899999998733 3456 8999999864
No 275
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=56.81 E-value=5.7 Score=26.18 Aligned_cols=25 Identities=28% Similarity=0.622 Sum_probs=20.7
Q ss_pred CeecCCCCCeee-----eccccCccCCCCC
Q 025700 215 DWSCPMCGNINW-----AKRTKCNICNTNK 239 (249)
Q Consensus 215 dw~c~~c~~~n~-----~~r~~c~~C~~~~ 239 (249)
|.+|+.|.+++- +..+.|..|++..
T Consensus 7 ~VKCp~C~niq~VFShA~tvV~C~~Cg~~L 36 (66)
T 1qxf_A 7 KVKCPDCEHEQVIFDHPSTIVKCIICGRTV 36 (66)
T ss_dssp EEECTTTCCEEEEESSCSSCEECSSSCCEE
T ss_pred EEECCCCCCceEEEecCceEEEcccCCCEE
Confidence 679999999876 5567899999866
No 276
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=55.54 E-value=23 Score=27.82 Aligned_cols=56 Identities=14% Similarity=0.163 Sum_probs=38.0
Q ss_pred eEEecCCCC-C--------CCHHHHHHHH--HhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCH-HHHHHHHH
Q 025700 7 SVYVCNLPH-G--------TDEDMLAEYF--GTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDP-HAALAAVE 73 (249)
Q Consensus 7 tI~V~nLp~-~--------~te~dL~~~F--~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~-~~A~~Ai~ 73 (249)
+++|-|+|. . .+..+|++.| ..|..++ |+.+.++. -.+|+|.|+|.+- .--..|+.
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k---------v~~l~~~~--Gh~g~aIv~F~~dw~Gf~~A~~ 81 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR---------VRPLWNYL--GHSGTAIVEFNKDWNGLHNGLL 81 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE---------EEEEECSS--BEEEEEEEECCSSHHHHHHHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce---------eEecccCC--CCceeEEEEecCChHHHHHHHH
Confidence 567788886 2 3447899977 8898877 44555543 3678999999853 34445554
No 277
>2ayj_A 50S ribosomal protein L40E; Zn-binding, beta-strand protein, structural genomics, PSI, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: g.41.8.7
Probab=54.56 E-value=7.6 Score=24.71 Aligned_cols=25 Identities=32% Similarity=0.703 Sum_probs=22.3
Q ss_pred CCeecCCCCCeeeeccccCccCCCC
Q 025700 214 NDWSCPMCGNINWAKRTKCNICNTN 238 (249)
Q Consensus 214 ~dw~c~~c~~~n~~~r~~c~~C~~~ 238 (249)
.-++|-.|.+.|-...+.|-+|+..
T Consensus 18 ~k~ICrkC~ARnp~~A~~CRKCg~~ 42 (56)
T 2ayj_A 18 LKKVCRKCGALNPIRATKCRRCHST 42 (56)
T ss_dssp CCEEETTTCCEECTTCSSCTTTCCC
T ss_pred chhhhccccCcCCcccccccCCCCC
Confidence 4589999999999999999999853
No 278
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=53.01 E-value=6.5 Score=24.90 Aligned_cols=26 Identities=38% Similarity=0.796 Sum_probs=20.8
Q ss_pred CCCccCCCcCCCCCc----ccccccccccccC
Q 025700 147 GDWMCPNTSCSNVNF----AFRGVCNRCGTAR 174 (249)
Q Consensus 147 Gdw~C~~~~c~~~nf----~~r~~C~~C~~~~ 174 (249)
-.+.|| .|++.-| ..|..|-+|+..-
T Consensus 17 ~~~fCP--kCG~~~~ma~~~dr~~C~kCgyt~ 46 (55)
T 2k4x_A 17 KHRFCP--RCGPGVFLAEHADRYSCGRCGYTE 46 (55)
T ss_dssp SSCCCT--TTTTTCCCEECSSEEECTTTCCCE
T ss_pred ccccCc--CCCCceeEeccCCEEECCCCCCEE
Confidence 368999 8998766 5688899998763
No 279
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=52.82 E-value=7.5 Score=25.38 Aligned_cols=25 Identities=32% Similarity=0.700 Sum_probs=20.0
Q ss_pred CeecCCCCCeee-----eccccCccCCCCC
Q 025700 215 DWSCPMCGNINW-----AKRTKCNICNTNK 239 (249)
Q Consensus 215 dw~c~~c~~~n~-----~~r~~c~~C~~~~ 239 (249)
|.+|+.|.+++- +....|..|++..
T Consensus 15 ~VkCp~C~~~q~VFSha~t~V~C~~Cgt~L 44 (63)
T 3j20_W 15 RVKCIDCGNEQIVFSHPATKVRCLICGATL 44 (63)
T ss_dssp EEECSSSCCEEEEESSCSSCEECSSSCCEE
T ss_pred EEECCCCCCeeEEEecCCeEEEccCcCCEE
Confidence 689999999876 4567899998754
No 280
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=52.09 E-value=16 Score=24.52 Aligned_cols=27 Identities=26% Similarity=0.635 Sum_probs=18.4
Q ss_pred cCCCCCccCCCcCCCCCc----------ccccccccccc
Q 025700 144 QQDGDWMCPNTSCSNVNF----------AFRGVCNRCGT 172 (249)
Q Consensus 144 ~r~Gdw~C~~~~c~~~nf----------~~r~~C~~C~~ 172 (249)
...+...|. .|+...+ .|+..||+|..
T Consensus 11 ~~~~~~~C~--~C~~~I~~~e~v~a~~~~wH~~CF~C~~ 47 (82)
T 2co8_A 11 EAGAGDLCA--LCGEHLYVLERLCVNGHFFHRSCFRCHT 47 (82)
T ss_dssp CCCSSCBCS--SSCCBCCTTTBCCBTTBCCBTTTCBCSS
T ss_pred CCCCCCCCc--ccCCCcccceEEEECCCeeCCCcCEEcC
Confidence 345678888 8876553 46778888854
No 281
>3iz6_X 40S ribosomal protein S27 (S27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=49.21 E-value=16 Score=25.27 Aligned_cols=27 Identities=30% Similarity=0.368 Sum_probs=22.0
Q ss_pred CeecCCCCCeee-----eccccCccCCCCCCC
Q 025700 215 DWSCPMCGNINW-----AKRTKCNICNTNKPG 241 (249)
Q Consensus 215 dw~c~~c~~~n~-----~~r~~c~~C~~~~~~ 241 (249)
|.+|+.|.+++- +.-+.|..|++-...
T Consensus 36 ~VkCp~C~~~~~VFShA~t~V~C~~CgtvL~~ 67 (86)
T 3iz6_X 36 DVKCQGCFNITTVFSHSQTVVVCPGCQTVLCQ 67 (86)
T ss_dssp EEECTTTCCEEEEETTCSSCCCCSSSCCCCSC
T ss_pred EEECCCCCCeeEEEecCCcEEEccCCCCEeec
Confidence 689999999876 556789999987654
No 282
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=49.19 E-value=11 Score=28.60 Aligned_cols=29 Identities=14% Similarity=0.260 Sum_probs=21.8
Q ss_pred CCCCeecCCCCCeeee-------------c----------cccCccCCCCCC
Q 025700 212 GPNDWSCPMCGNINWA-------------K----------RTKCNICNTNKP 240 (249)
Q Consensus 212 ~~~dw~c~~c~~~n~~-------------~----------r~~c~~C~~~~~ 240 (249)
.+.-|.|..|++.--. . ...|+.|+.+..
T Consensus 67 ~p~~~~C~~CG~~~~~~~~~~~~~~~~~~~~h~~p~~~~~~~~CP~Cgs~~~ 118 (139)
T 3a43_A 67 EEAVFKCRNCNYEWKLKEVKDKFDERIKEDIHFIPEVVHAFLACPKCGSHDF 118 (139)
T ss_dssp ECCEEEETTTCCEEEGGGCTTCCSCCCGGGCCCCGGGCGGGCSCSSSSCCCE
T ss_pred cCCcEECCCCCCEEecccccccccccccccccccccccccCCcCccccCCcc
Confidence 3568999999987331 2 467999998864
No 283
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=48.34 E-value=13 Score=23.62 Aligned_cols=14 Identities=36% Similarity=0.826 Sum_probs=11.1
Q ss_pred CCCCeecCCCCCee
Q 025700 212 GPNDWSCPMCGNIN 225 (249)
Q Consensus 212 ~~~dw~c~~c~~~n 225 (249)
..+++.|..|+.+.
T Consensus 27 ~~ge~vC~~CGlVl 40 (58)
T 1dl6_A 27 RAGDMICPECGLVV 40 (58)
T ss_dssp SSCCEECTTTCCEE
T ss_pred CCCeEEeCCCCCEE
Confidence 34799999999774
No 284
>2xzm_6 RPS27E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_6
Probab=44.41 E-value=12 Score=25.72 Aligned_cols=25 Identities=28% Similarity=0.619 Sum_probs=20.5
Q ss_pred CeecCCCCCeee-----eccccCccCCCCC
Q 025700 215 DWSCPMCGNINW-----AKRTKCNICNTNK 239 (249)
Q Consensus 215 dw~c~~c~~~n~-----~~r~~c~~C~~~~ 239 (249)
|..|+.|.+++- +.-+.|..|++..
T Consensus 32 ~VkCp~C~n~q~VFShA~t~V~C~~Cg~~L 61 (81)
T 2xzm_6 32 DVKCAQCQNIQMIFSNAQSTIICEKCSAIL 61 (81)
T ss_dssp EEECSSSCCEEEEETTCSSCEECSSSCCEE
T ss_pred EeECCCCCCeeEEEecCccEEEccCCCCEE
Confidence 689999999876 5567899999763
No 285
>3u5c_b RP61, YS20, 40S ribosomal protein S27-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_X 3u5g_b
Probab=44.12 E-value=14 Score=25.40 Aligned_cols=26 Identities=35% Similarity=0.598 Sum_probs=21.3
Q ss_pred CeecCCCCCeee-----eccccCccCCCCCC
Q 025700 215 DWSCPMCGNINW-----AKRTKCNICNTNKP 240 (249)
Q Consensus 215 dw~c~~c~~~n~-----~~r~~c~~C~~~~~ 240 (249)
|..|+.|.+++- +.-+.|..|++-..
T Consensus 34 ~VkCp~C~~~q~VFSha~t~V~C~~Cg~~L~ 64 (82)
T 3u5c_b 34 DVKCPGCLNITTVFSHAQTAVTCESCSTILC 64 (82)
T ss_dssp EEECTTSCSCEEEESBCSSCCCCSSSCCCCE
T ss_pred EEECCCCCCeeEEEecCCeEEEccccCCEEe
Confidence 789999999876 55678999998654
No 286
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=42.90 E-value=18 Score=23.37 Aligned_cols=25 Identities=24% Similarity=0.628 Sum_probs=19.7
Q ss_pred ecCCCCCeeeeccccCccCCCCCCCCC
Q 025700 217 SCPMCGNINWAKRTKCNICNTNKPGHN 243 (249)
Q Consensus 217 ~c~~c~~~n~~~r~~c~~C~~~~~~~~ 243 (249)
.|+.|+.-.+ ...|..|+++-....
T Consensus 8 ~C~~CgvYTL--k~~CP~CG~~T~~~h 32 (60)
T 2apo_B 8 KCPKCGLYTL--KEICPKCGEKTVIPK 32 (60)
T ss_dssp ECTTTCCEES--SSBCSSSCSBCBCCC
T ss_pred eCCCCCCEec--cccCcCCCCcCCCCC
Confidence 6999997766 788999998765443
No 287
>3irb_A Uncharacterized protein from DUF35 family; 13815350, protein with unknown function from DUF35 family, S genomics; 1.80A {Sulfolobus solfataricus}
Probab=40.04 E-value=12 Score=28.53 Aligned_cols=24 Identities=29% Similarity=0.668 Sum_probs=21.6
Q ss_pred ecCCCCCeeeeccccCccCCCCCC
Q 025700 217 SCPMCGNINWAKRTKCNICNTNKP 240 (249)
Q Consensus 217 ~c~~c~~~n~~~r~~c~~C~~~~~ 240 (249)
.|..|+.+.|--|..|..|.....
T Consensus 49 rC~~CG~~~~PPr~~Cp~C~s~~~ 72 (145)
T 3irb_A 49 KCSKCGRIFVPARSYCEHCFVKIE 72 (145)
T ss_dssp ECTTTCCEEESCCSEETTTTEECC
T ss_pred EeCCCCcEEcCchhhCcCCCCCce
Confidence 599999999999999999997654
No 288
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=36.13 E-value=22 Score=22.96 Aligned_cols=26 Identities=23% Similarity=0.774 Sum_probs=19.4
Q ss_pred ecCCCCCeeeeccccCccCCCCCCCCCC
Q 025700 217 SCPMCGNINWAKRTKCNICNTNKPGHNE 244 (249)
Q Consensus 217 ~c~~c~~~n~~~r~~c~~C~~~~~~~~~ 244 (249)
.|+.|+.-.+ ...|..|+.+-....+
T Consensus 7 ~C~~Cg~YTL--k~~CP~CG~~t~~ahP 32 (60)
T 2aus_D 7 KCPKCGRYTL--KETCPVCGEKTKVAHP 32 (60)
T ss_dssp ECTTTCCEES--SSBCTTTCSBCEESSC
T ss_pred ECCCCCCEEc--cccCcCCCCccCCCCC
Confidence 6999997666 7889999987554433
No 289
>2gnr_A Conserved hypothetical protein; 13815350, structural genomics, PSI, protein structure initiative; 1.80A {Sulfolobus solfataricus P2} PDB: 3irb_A
Probab=35.39 E-value=15 Score=27.92 Aligned_cols=23 Identities=30% Similarity=0.705 Sum_probs=20.7
Q ss_pred ecCCCCCeeeeccccCccCCCCC
Q 025700 217 SCPMCGNINWAKRTKCNICNTNK 239 (249)
Q Consensus 217 ~c~~c~~~n~~~r~~c~~C~~~~ 239 (249)
.|..|+...|--|..|..|....
T Consensus 49 rC~~CG~~~fPPr~~Cp~C~s~~ 71 (145)
T 2gnr_A 49 KCSKCGRIFVPARSYCEHCFVKI 71 (145)
T ss_dssp ECTTTCCEEESCCSEETTTTEEC
T ss_pred EECCCCcEEeCCCCCCCCCCCCc
Confidence 69999999999999999998763
No 290
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=34.59 E-value=16 Score=22.58 Aligned_cols=24 Identities=33% Similarity=0.845 Sum_probs=18.0
Q ss_pred CCccCCCcCCCCCccc----cccccccccc
Q 025700 148 DWMCPNTSCSNVNFAF----RGVCNRCGTA 173 (249)
Q Consensus 148 dw~C~~~~c~~~nf~~----r~~C~~C~~~ 173 (249)
...|| .|+...|.. |..|-+|+..
T Consensus 19 ~k~CP--~CG~~~fm~~~~~R~~C~kCG~t 46 (50)
T 3j20_Y 19 NKFCP--RCGPGVFMADHGDRWACGKCGYT 46 (50)
T ss_dssp SEECS--SSCSSCEEEECSSEEECSSSCCE
T ss_pred cccCC--CCCCceEEecCCCeEECCCCCCE
Confidence 56788 898865555 8889999764
No 291
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=33.78 E-value=21 Score=27.34 Aligned_cols=26 Identities=27% Similarity=0.622 Sum_probs=20.9
Q ss_pred CCccCCCcCCCCCccc----cccccccccc
Q 025700 148 DWMCPNTSCSNVNFAF----RGVCNRCGTA 173 (249)
Q Consensus 148 dw~C~~~~c~~~nf~~----r~~C~~C~~~ 173 (249)
.+.||.+.|+...|.. |..|-+|+..
T Consensus 118 ~~~c~~~~cg~g~fma~h~~r~~cgkc~~t 147 (152)
T 3u5c_f 118 RRECSNPTCGAGVFLANHKDRLYCGKCHSV 147 (152)
T ss_dssp SCBCCSTTSCSSSBEEECSSCEEESSSSSC
T ss_pred cCcCCCccCCCceEecccCCCcccCCCceE
Confidence 6889977799876654 7889999865
No 292
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=32.72 E-value=27 Score=26.74 Aligned_cols=27 Identities=19% Similarity=0.326 Sum_probs=20.5
Q ss_pred CCCCeecCCCCCeee--eccccCccCCCC
Q 025700 212 GPNDWSCPMCGNINW--AKRTKCNICNTN 238 (249)
Q Consensus 212 ~~~dw~c~~c~~~n~--~~r~~c~~C~~~ 238 (249)
+.....|..|+..-- .....|+.|+.+
T Consensus 129 ~~~~y~C~~Cg~~~~~~~~~~~Cp~CG~~ 157 (165)
T 2lcq_A 129 IKWRYVCIGCGRKFSTLPPGGVCPDCGSK 157 (165)
T ss_dssp CCCCEEESSSCCEESSCCGGGBCTTTCCB
T ss_pred ccEEEECCCCCCcccCCCCCCcCCCCCCc
Confidence 567899999997642 235689999975
No 293
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=32.36 E-value=1.3e+02 Score=21.03 Aligned_cols=56 Identities=20% Similarity=0.349 Sum_probs=41.9
Q ss_pred CCCeEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHh
Q 025700 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWF 75 (249)
Q Consensus 4 ~~~tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~~l 75 (249)
.+.-|-|-|||..+-..++.-.....|.- ++.|.. -|.|.|.|.+.++...||..|
T Consensus 11 qnclikiinipqgtlkaevvlavrhlgye------------fycdyi----dgqamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 11 QNCLIKIINIPQGTLKAEVVLAVRHLGYE------------FYCDYI----DGQAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHTTCCC------------EEEEEC----SSCEEEEESSHHHHHHHHHHH
T ss_pred hCcEEEEEecCCCceeeeeEEeehhcCee------------Eeeeee----cCeeEEEecCChHHHHHHHHH
Confidence 45678888999999988887666666643 333322 246999999999999999865
No 294
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=31.36 E-value=83 Score=22.34 Aligned_cols=50 Identities=14% Similarity=0.111 Sum_probs=29.9
Q ss_pred CCCCHHHHHHHHHhcCCeeecCCCCCCeEEE---EecCCCCCcccEEEEEeCCHHHHHHH
Q 025700 15 HGTDEDMLAEYFGTIGLLKKDKRTGRPKVWL---YRDKTTNEYKGDATVTYEDPHAALAA 71 (249)
Q Consensus 15 ~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i---~~d~~tg~~rG~aFV~F~s~~~A~~A 71 (249)
..++..+|++.+.+.-.+..+. |.+ ...--.+++.|||. .|+|.+.|++.
T Consensus 28 ~tpsk~eirekLAk~~~~~~~~------Vvv~~~~t~fG~gkstG~a~-IYds~e~akk~ 80 (101)
T 1xn9_A 28 STPSRNDVRNKLAAMLNAPLEL------LVIQRIKTEYGMQESKGYAK-LYEDADRMKQV 80 (101)
T ss_dssp SCCCHHHHHHHHHHHTTCCTTT------EEEEEEEECSSSSEEEEEEE-ECSCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCE------EEEEeeEecCCCceEEEEEE-EECCHHHHHhh
Confidence 5678899999888653333221 322 22223466777774 47777777655
No 295
>4ev1_A Anabena TIC22; TIC22 fold, chaperon, protein transport, TIC22-like family, thylakoids, chaperone; HET: NHE; 1.95A {Anabaena SP}
Probab=29.81 E-value=1.5e+02 Score=24.65 Aligned_cols=61 Identities=16% Similarity=0.203 Sum_probs=36.9
Q ss_pred CCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCc-ccEEEEEeCCHHHHHHHHHHhCC
Q 025700 17 TDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEY-KGDATVTYEDPHAALAAVEWFNN 77 (249)
Q Consensus 17 ~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~-rG~aFV~F~s~~~A~~Ai~~l~g 77 (249)
.++++|.+.+...-........|.|-+....+...+.. ..-.+..|-+.++|+++|..|..
T Consensus 2 L~e~eV~ekL~~VPVF~Itn~~G~Pll~~~~~~~~~~~~~~~V~~~F~s~~dA~~~L~~lk~ 63 (252)
T 4ev1_A 2 LSEQQIKEKLDSVPIYLVTNEKGLPLSRPLPNAPNGQKAGGSITGAYMSRQEAQAFINELRN 63 (252)
T ss_dssp CCHHHHHHHHTTSEEEEEECTTCCBCEEECCCCTTSCCSCSEEEEEESCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhcCCcEEEEECCCCCeEEEecCCccccccCCCeEEEEEecHHHHHHHHHHHHh
Confidence 47888998888654433334456666654443211110 11246667789999999987755
No 296
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=29.50 E-value=39 Score=21.71 Aligned_cols=26 Identities=23% Similarity=0.443 Sum_probs=18.5
Q ss_pred cCCCCCccCCCcCCCCCccccccccccccc
Q 025700 144 QQDGDWMCPNTSCSNVNFAFRGVCNRCGTA 173 (249)
Q Consensus 144 ~r~Gdw~C~~~~c~~~nf~~r~~C~~C~~~ 173 (249)
....||.|. .|+... .-..|..|...
T Consensus 4 ~~~~~~~C~--vC~~~g--~ll~CD~C~~~ 29 (66)
T 1xwh_A 4 AQKNEDECA--VCRDGG--ELICCDGCPRA 29 (66)
T ss_dssp CCSCCCSBS--SSSCCS--SCEECSSCCCE
T ss_pred CCCCCCCCc--cCCCCC--CEEEcCCCChh
Confidence 356899999 898653 55678877554
No 297
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=29.30 E-value=1e+02 Score=21.21 Aligned_cols=58 Identities=12% Similarity=0.005 Sum_probs=39.2
Q ss_pred eEEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHH
Q 025700 7 SVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVE 73 (249)
Q Consensus 7 tI~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~aFV~F~s~~~A~~Ai~ 73 (249)
..|+--+....+..+|++.++++-.|+..+ |..+.-+. + .--|||++....+|.....
T Consensus 24 n~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~------VNTl~~~~-~--~KKA~V~L~~~~~a~dva~ 81 (86)
T 3j21_T 24 NKLTFIVDRRATKQDIKRAVEEIFNVKVEK------VNTLITPR-G--EKKAYVKLKPEYSASEVAA 81 (86)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHTTCCEEE------EEEEECTT-S--CEEEEEEECTTSCHHHHHH
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHcCCCceE------EEEeEcCC-C--ceEEEEEcCCCCcHHHHHH
Confidence 345556788999999999998865565533 55554432 1 2249999998877776543
No 298
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.90 E-value=72 Score=20.74 Aligned_cols=24 Identities=21% Similarity=0.522 Sum_probs=16.1
Q ss_pred CCeecCCCCCeee---------eccccCccCCC
Q 025700 214 NDWSCPMCGNINW---------AKRTKCNICNT 237 (249)
Q Consensus 214 ~dw~c~~c~~~n~---------~~r~~c~~C~~ 237 (249)
....|..|..... .|+..|++|..
T Consensus 14 ~~~~C~~C~~~I~~~~~~a~~~~~H~~CF~C~~ 46 (79)
T 1x62_A 14 KLPMCDKCGTGIVGVFVKLRDRHRHPECYVCTD 46 (79)
T ss_dssp CCCCCSSSCCCCCSSCEECSSCEECTTTTSCSS
T ss_pred CCCccccCCCCccCcEEEECcceeCcCcCeeCC
Confidence 3457887776433 67888888753
No 299
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.88 E-value=51 Score=21.28 Aligned_cols=24 Identities=21% Similarity=0.527 Sum_probs=15.9
Q ss_pred CCeecCCCCCeee----------eccccCccCCC
Q 025700 214 NDWSCPMCGNINW----------AKRTKCNICNT 237 (249)
Q Consensus 214 ~dw~c~~c~~~n~----------~~r~~c~~C~~ 237 (249)
....|..|..... .|+..|++|..
T Consensus 8 ~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~ 41 (76)
T 2cu8_A 8 MASKCPKCDKTVYFAEKVSSLGKDWHKFCLKCER 41 (76)
T ss_dssp CCCBCTTTCCBCCTTTEEEETTEEEETTTCBCSS
T ss_pred CCCCCcCCCCEeECCeEEEECCeEeeCCCCCCCC
Confidence 3456777776554 67888887653
No 300
>2xzm_P RPS24E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_P
Probab=23.97 E-value=1.5e+02 Score=22.57 Aligned_cols=50 Identities=16% Similarity=0.149 Sum_probs=28.9
Q ss_pred CCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecC---CCCCcccEEEEEeCCHHHHHHH
Q 025700 15 HGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDK---TTNEYKGDATVTYEDPHAALAA 71 (249)
Q Consensus 15 ~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~---~tg~~rG~aFV~F~s~~~A~~A 71 (249)
..++..||++.+.+.-.+..+. |.|..-+ -.+++.|||.| |+|++.|...
T Consensus 31 aTpSk~eIrekLAkmy~~~~d~------VvV~g~rT~fGggkStGfa~I-YDs~e~aKk~ 83 (149)
T 2xzm_P 31 PTASKEKIREELAKQLKVDARN------VVVYGFSTQYGGGKSTGFALV-YDNQQYLLKY 83 (149)
T ss_dssp CSCCHHHHHHHHHHHHTCCGGG------EEEEEECCCSSSSEEEEEEEE-ESCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCE------EEEEeeEecCCCceEEEEEEE-eCCHHHHHhh
Confidence 4678899999888632333221 3332221 23556677764 7787777653
No 301
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=23.59 E-value=32 Score=22.64 Aligned_cols=24 Identities=21% Similarity=0.581 Sum_probs=14.5
Q ss_pred CCeecCCCCCeee----------eccccCccCCC
Q 025700 214 NDWSCPMCGNINW----------AKRTKCNICNT 237 (249)
Q Consensus 214 ~dw~c~~c~~~n~----------~~r~~c~~C~~ 237 (249)
....|..|..... .|+..|++|..
T Consensus 6 ~~~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~ 39 (81)
T 1a7i_A 6 GGNKCGACGRTVYHAEEVQCDGRSFHRCCFLCMV 39 (81)
T ss_dssp --CBCSSSCCBCSSTTEEEETTEEEESSSEECSS
T ss_pred CCCcCcCcCccccCceeEEeCCcccccccCccCC
Confidence 3456777766543 67888887653
No 302
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=22.60 E-value=34 Score=23.41 Aligned_cols=15 Identities=13% Similarity=0.344 Sum_probs=7.9
Q ss_pred cccccccccccCCCC
Q 025700 163 FRGVCNRCGTARPVG 177 (249)
Q Consensus 163 ~r~~C~~C~~~~~~~ 177 (249)
+++.|++|+.....+
T Consensus 4 k~~~C~~Cg~~GH~~ 18 (83)
T 3nyb_B 4 KKVQCTLCKSKKHSK 18 (83)
T ss_dssp ---CCSSSCCSSSCG
T ss_pred ccCCCCCCCCCCCcc
Confidence 356677887765444
No 303
>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3
Probab=21.73 E-value=1.7e+02 Score=20.69 Aligned_cols=49 Identities=14% Similarity=-0.002 Sum_probs=29.1
Q ss_pred CCCCHHHHHHHHHhcCCeeecCCCCCCeEEE---EecCCCCCcccEEEEEeCCHHHHHH
Q 025700 15 HGTDEDMLAEYFGTIGLLKKDKRTGRPKVWL---YRDKTTNEYKGDATVTYEDPHAALA 70 (249)
Q Consensus 15 ~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i---~~d~~tg~~rG~aFV~F~s~~~A~~ 70 (249)
..++..+|++.+.+.-.+..+. |.+ ...--.+++.|||. .|+|.+.|++
T Consensus 28 ~tpsk~eirekLAk~~~~~~d~------Vvv~~~~T~fG~gkstG~a~-IYds~e~akk 79 (102)
T 1ywx_A 28 ATPSIKDVKMKLVAVLNANKQV------LVVDTLDQIFGKLEAEGYAK-IYNDEKAMAT 79 (102)
T ss_dssp CCCCHHHHHHHHHHHHTSCSTT------EEEEEEEECSSSSEEEEEEE-ECSCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCE------EEEEccEecCCCceEEEEEE-EECCHHHHHh
Confidence 5678899998887542222211 322 22333466777775 4778777764
No 304
>3bn7_A Ferredoxin-like protein; stress responsive A/B barre structural genomics, joint center for structural genomics; HET: MSE; 1.64A {Caulobacter crescentus}
Probab=21.45 E-value=2.2e+02 Score=20.30 Aligned_cols=61 Identities=8% Similarity=-0.046 Sum_probs=32.8
Q ss_pred EEecCCCCCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCC----CCcccE--E-EEEeCCHHHHHH
Q 025700 8 VYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTT----NEYKGD--A-TVTYEDPHAALA 70 (249)
Q Consensus 8 I~V~nLp~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~t----g~~rG~--a-FV~F~s~~~A~~ 70 (249)
|.+-.|...+++++++++...+-.+. ...+.-.+.+-.+..+ ...++| + +++|++.++.+.
T Consensus 24 IVlfklK~~~~~~~~~~~~~~l~~L~--~Ip~i~~~~vG~~~s~e~R~~~~~g~d~~l~~~F~s~edl~~ 91 (120)
T 3bn7_A 24 QVFFWLKNPGDKADRDKLIAGLKALK--AIDVIQQLHVGVPAATEKRDVVDNSYDVSELMVFKSVEDQKR 91 (120)
T ss_dssp EEEEEESSTTCHHHHHHHHHHHHGGG--GSTTCSEEEEECCCCCCCCTTCCCCCSEEEEEEESSHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHHhcc--CCCCeEEEEEccCCCcccccccCCCccEEEEEEECCHHHHHH
Confidence 44457788888888776665543333 1112222444444332 224444 4 468888877654
No 305
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=21.09 E-value=59 Score=24.27 Aligned_cols=25 Identities=20% Similarity=0.567 Sum_probs=17.3
Q ss_pred eecCCCCCeeeec--------cccCccCCCCCC
Q 025700 216 WSCPMCGNINWAK--------RTKCNICNTNKP 240 (249)
Q Consensus 216 w~c~~c~~~n~~~--------r~~c~~C~~~~~ 240 (249)
.-||.|+++-+.. +..|..|.-..+
T Consensus 25 ~FCPeCgNmL~pked~~~~~l~~~CrtCgY~~~ 57 (133)
T 3qt1_I 25 RFCRDCNNMLYPREDKENNRLLFECRTCSYVEE 57 (133)
T ss_dssp CBCTTTCCBCBCCBCTTTCCBCCBCSSSCCBCC
T ss_pred eeCCCCCCEeeECccCCCceeEEECCCCCCcEE
Confidence 4588888887755 467888876544
No 306
>2lfv_A Protein DAMX; cell division, peptidoglycan binding domain, murein binding bacterial cell division protein, RNP fold, RNP domain, cell; NMR {Escherichia coli}
Probab=26.19 E-value=21 Score=25.68 Aligned_cols=54 Identities=17% Similarity=0.139 Sum_probs=33.4
Q ss_pred CCCCHHHHHHHHHhcCCeeecCCCCCCeEEEEecCCCCCcccE--EEEEeCCHHHHHHHHHHhCCc
Q 025700 15 HGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGD--ATVTYEDPHAALAAVEWFNNK 78 (249)
Q Consensus 15 ~~~te~dL~~~F~~~G~i~~~~~~g~p~V~i~~d~~tg~~rG~--aFV~F~s~~~A~~Ai~~l~g~ 78 (249)
...++++|..+..+.. +.. +++++....|+. -| -+=.|.+.++|.+|++.|...
T Consensus 32 a~~~~~~l~~f~~~~~-l~~--------~~v~~t~rnGk~-WyvVlyG~Y~s~~~A~~A~~~LP~~ 87 (106)
T 2lfv_A 32 SSSNYDNLNGWAKKEN-LKN--------YVVYETTRNGQP-WYVLVSGVYASKEEAKKAVSTLPAD 87 (106)
Confidence 3445677777777765 222 555554333332 12 233789999999999988754
No 307
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.66 E-value=85 Score=19.25 Aligned_cols=25 Identities=16% Similarity=0.509 Sum_probs=17.9
Q ss_pred CCCCCccCCCcCCCCCccccccccccccc
Q 025700 145 QDGDWMCPNTSCSNVNFAFRGVCNRCGTA 173 (249)
Q Consensus 145 r~Gdw~C~~~~c~~~nf~~r~~C~~C~~~ 173 (249)
...++.|. .|+..+ ....|..|...
T Consensus 6 ~~~~~~C~--vC~~~g--~ll~Cd~C~~~ 30 (56)
T 2yql_A 6 SGHEDFCS--VCRKSG--QLLMCDTCSRV 30 (56)
T ss_dssp CSSCCSCS--SSCCSS--CCEECSSSSCE
T ss_pred CCCCCCCc--cCCCCC--eEEEcCCCCcc
Confidence 45689998 898754 55678887644
Done!