Query 025701
Match_columns 249
No_of_seqs 115 out of 1091
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 08:36:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025701.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025701hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1304 Amino acid transporter 100.0 4E-36 8.6E-41 271.4 16.7 215 5-243 229-449 (449)
2 KOG1303 Amino acid transporter 100.0 6.6E-36 1.4E-40 272.9 16.0 206 20-246 231-437 (437)
3 PTZ00206 amino acid transporte 100.0 3.9E-35 8.6E-40 272.4 14.6 206 17-244 256-465 (467)
4 PLN03074 auxin influx permease 100.0 1.3E-33 2.9E-38 262.0 17.1 221 2-249 219-457 (473)
5 PF01490 Aa_trans: Transmembra 100.0 3.6E-33 7.7E-38 254.4 -0.1 216 12-240 187-408 (409)
6 KOG1305 Amino acid transporter 100.0 6.2E-29 1.3E-33 225.9 16.1 216 12-246 189-408 (411)
7 KOG4303 Vesicular inhibitory a 99.9 4.8E-29 1E-33 215.7 -3.1 220 16-249 301-520 (524)
8 COG0814 SdaC Amino acid permea 99.6 1.7E-14 3.6E-19 132.5 16.7 207 13-239 189-411 (415)
9 TIGR00837 araaP aromatic amino 99.1 6.5E-10 1.4E-14 100.9 12.7 172 15-211 176-359 (381)
10 PF03222 Trp_Tyr_perm: Tryptop 99.0 1.1E-08 2.5E-13 93.4 15.5 175 12-213 179-367 (394)
11 PRK15132 tyrosine transporter 98.8 6.1E-08 1.3E-12 88.7 13.5 190 19-233 183-389 (403)
12 PRK10483 tryptophan permease; 98.8 2.7E-07 5.8E-12 84.5 14.9 169 17-211 192-373 (414)
13 PRK09664 tryptophan permease T 98.6 1E-06 2.2E-11 80.7 15.1 169 18-211 194-374 (415)
14 PRK13629 threonine/serine tran 98.5 2.9E-06 6.2E-11 78.1 13.6 199 17-232 209-435 (443)
15 TIGR00814 stp serine transport 98.4 1.7E-06 3.7E-11 79.2 9.6 181 15-209 184-377 (397)
16 PRK11021 putative transporter; 98.1 0.00026 5.7E-09 64.9 16.8 65 14-81 174-240 (410)
17 PRK10644 arginine:agmatin anti 97.9 0.00059 1.3E-08 63.3 16.3 57 15-74 189-245 (445)
18 PRK10655 potE putrescine trans 97.9 0.00085 1.8E-08 62.1 16.1 57 16-75 188-244 (438)
19 TIGR03813 put_Glu_GABA_T putat 97.8 0.0005 1.1E-08 64.4 14.5 49 25-76 202-250 (474)
20 PRK10435 cadB lysine/cadaverin 97.8 0.0019 4.2E-08 59.8 17.8 61 14-77 184-244 (435)
21 PRK10197 gamma-aminobutyrate t 97.7 0.0013 2.8E-08 61.2 14.2 57 15-74 179-235 (446)
22 PRK10746 putative transport pr 97.7 0.0016 3.5E-08 60.8 14.9 57 15-74 198-254 (461)
23 PRK15049 L-asparagine permease 97.7 0.0014 3.1E-08 61.8 14.7 59 15-76 218-276 (499)
24 PRK10249 phenylalanine transpo 97.6 0.00091 2E-08 62.4 12.7 57 15-74 207-263 (458)
25 TIGR03810 arg_ornith_anti argi 97.6 0.0032 6.9E-08 58.9 16.1 61 16-80 194-254 (468)
26 TIGR00913 2A0310 amino acid pe 97.6 0.0041 9E-08 58.2 16.2 56 15-73 195-250 (478)
27 PRK11357 frlA putative fructos 97.6 0.0022 4.8E-08 59.5 14.2 56 16-74 194-249 (445)
28 PRK11049 D-alanine/D-serine/gl 97.6 0.0022 4.8E-08 60.0 14.3 59 15-76 209-267 (469)
29 PRK10580 proY putative proline 97.5 0.0026 5.7E-08 59.3 14.2 56 16-74 198-253 (457)
30 PRK11387 S-methylmethionine tr 97.5 0.0029 6.2E-08 59.3 14.4 56 16-74 205-260 (471)
31 PRK10836 lysine transporter; P 97.4 0.0051 1.1E-07 57.9 14.9 57 16-75 204-260 (489)
32 TIGR00909 2A0306 amino acid tr 97.4 0.0052 1.1E-07 56.6 14.6 59 15-76 193-251 (429)
33 PF13520 AA_permease_2: Amino 97.4 0.008 1.7E-07 55.1 15.0 108 19-131 190-304 (426)
34 TIGR00905 2A0302 transporter, 97.4 0.01 2.2E-07 55.6 15.9 58 15-76 197-254 (473)
35 TIGR00907 2A0304 amino acid pe 97.3 0.0068 1.5E-07 56.8 14.6 53 17-72 217-269 (482)
36 PRK10238 aromatic amino acid t 97.3 0.0075 1.6E-07 56.3 14.4 53 16-71 199-251 (456)
37 TIGR00908 2A0305 ethanolamine 97.3 0.0071 1.5E-07 56.0 14.2 56 15-73 189-244 (442)
38 TIGR01773 GABAperm gamma-amino 97.3 0.0068 1.5E-07 56.3 13.9 59 15-76 199-257 (452)
39 TIGR00906 2A0303 cationic amin 97.2 0.0067 1.5E-07 58.1 13.2 58 15-75 229-286 (557)
40 TIGR00911 2A0308 L-type amino 97.2 0.007 1.5E-07 57.1 12.5 58 15-75 233-290 (501)
41 PRK15238 inner membrane transp 97.0 0.026 5.6E-07 53.2 14.9 54 17-73 211-264 (496)
42 TIGR00930 2a30 K-Cl cotranspor 96.9 0.04 8.6E-07 56.1 16.2 53 19-74 282-334 (953)
43 COG0531 PotE Amino acid transp 96.9 0.031 6.6E-07 51.7 14.2 63 16-81 200-262 (466)
44 KOG1287 Amino acid transporter 96.7 0.019 4.1E-07 53.5 10.8 182 14-213 201-388 (479)
45 TIGR03428 ureacarb_perm permea 96.6 0.3 6.5E-06 45.7 18.7 58 16-76 212-269 (475)
46 TIGR00910 2A0307_GadC glutamat 96.6 0.032 6.8E-07 52.9 12.2 50 20-72 197-246 (507)
47 PF00324 AA_permease: Amino ac 95.2 0.017 3.8E-07 54.0 3.6 65 14-81 197-261 (478)
48 COG1113 AnsP Gamma-aminobutyra 94.8 0.42 9.1E-06 44.3 11.1 189 4-210 185-388 (462)
49 TIGR00912 2A0309 spore germina 93.8 0.89 1.9E-05 40.8 11.0 64 16-83 177-241 (359)
50 KOG1286 Amino acid transporter 84.4 10 0.00022 36.6 10.2 112 16-130 231-351 (554)
51 KOG1289 Amino acid transporter 81.6 35 0.00077 32.7 12.4 66 15-83 250-315 (550)
52 COG0833 LysP Amino acid transp 81.2 20 0.00043 34.3 10.6 51 16-69 233-283 (541)
53 KOG4812 Golgi-associated prote 77.7 5.2 0.00011 34.0 5.0 77 166-246 161-253 (262)
54 TIGR02358 thia_cytX probable h 72.6 74 0.0016 29.0 11.8 44 34-81 190-233 (386)
55 COG0814 SdaC Amino acid permea 71.2 21 0.00045 33.1 7.9 51 160-210 324-375 (415)
56 KOG2082 K+/Cl- cotransporter K 66.3 44 0.00095 33.5 9.0 188 20-232 413-618 (1075)
57 PRK09442 panF sodium/panthothe 64.9 1.2E+02 0.0027 28.3 16.1 27 50-76 266-292 (483)
58 TIGR00796 livcs branched-chain 63.7 1.2E+02 0.0026 27.8 11.7 42 33-77 197-242 (378)
59 PF03845 Spore_permease: Spore 62.5 14 0.00031 32.5 4.9 65 14-82 172-236 (320)
60 PRK11375 allantoin permease; P 60.6 1.5E+02 0.0033 27.9 12.5 64 16-83 226-294 (484)
61 PF05805 L6_membrane: L6 membr 57.7 22 0.00049 29.3 4.8 64 182-245 44-117 (195)
62 COG1914 MntH Mn2+ and Fe2+ tra 56.7 1.7E+02 0.0037 27.2 12.6 55 157-211 324-378 (416)
63 PRK13183 psbN photosystem II r 53.0 17 0.00037 22.6 2.6 31 53-83 4-34 (46)
64 TIGR00800 ncs1 NCS1 nucleoside 50.4 2.1E+02 0.0046 26.5 11.3 67 13-83 203-274 (442)
65 CHL00020 psbN photosystem II p 48.2 18 0.00038 22.2 2.0 28 56-83 4-31 (43)
66 TIGR00813 sss transporter, SSS 47.2 2.2E+02 0.0048 25.8 10.4 40 39-80 223-265 (407)
67 cd08766 Cyt_b561_ACYB-1_like P 46.0 77 0.0017 24.8 5.9 68 51-122 37-104 (144)
68 PF02468 PsbN: Photosystem II 45.7 24 0.00052 21.7 2.4 28 56-83 4-31 (43)
69 PRK12768 CysZ-like protein; Re 44.4 2E+02 0.0044 24.5 8.9 27 41-72 10-36 (240)
70 PRK12488 acetate permease; Pro 41.0 3.3E+02 0.0072 26.1 16.3 41 39-81 281-324 (549)
71 PHA02680 ORF090 IMV phosphoryl 40.1 1.3E+02 0.0028 21.5 5.7 71 17-91 11-81 (91)
72 PLN02680 carbon-monoxide oxyge 39.3 1.5E+02 0.0033 25.2 7.1 68 51-122 76-143 (232)
73 PRK11026 ftsX cell division AB 35.0 1.4E+02 0.0031 26.4 6.7 27 221-247 280-306 (309)
74 PF07954 DUF1689: Protein of u 34.6 63 0.0014 25.6 3.8 60 186-245 33-93 (152)
75 PF00474 SSF: Sodium:solute sy 33.6 1.6E+02 0.0036 26.6 7.1 42 169-211 352-394 (406)
76 COG3296 Uncharacterized protei 31.6 2.4E+02 0.0051 21.8 6.3 28 167-209 22-49 (143)
77 cd08765 Cyt_b561_CYBRD1 Verteb 31.1 1.8E+02 0.004 23.0 6.0 69 51-123 44-112 (153)
78 cd08763 Cyt_b561_CYB561 Verteb 30.6 1.9E+02 0.0041 22.6 6.0 68 51-122 37-104 (143)
79 TIGR02119 panF sodium/pantothe 29.5 4.6E+02 0.01 24.3 14.9 29 50-78 265-293 (471)
80 PLN02351 cytochromes b561 fami 29.2 2.4E+02 0.0052 24.2 6.7 76 39-123 72-147 (242)
81 KOG1619 Cytochrome b [Energy p 28.9 1.3E+02 0.0029 25.7 5.1 92 23-122 61-152 (245)
82 cd08764 Cyt_b561_CG1275_like N 28.6 2.1E+02 0.0045 24.0 6.2 70 51-122 54-123 (214)
83 PF11345 DUF3147: Protein of u 28.0 2.5E+02 0.0054 20.7 7.3 78 159-241 3-80 (108)
84 PRK09400 secE preprotein trans 28.0 67 0.0015 21.3 2.6 31 41-77 22-52 (61)
85 COG3476 Tryptophan-rich sensor 27.1 2E+02 0.0044 23.0 5.5 60 21-85 15-74 (161)
86 TIGR00439 ftsX putative protei 26.6 2.6E+02 0.0056 24.7 6.8 28 220-247 279-306 (309)
87 COG1457 CodB Purine-cytosine p 26.5 5.5E+02 0.012 24.1 13.0 84 32-122 209-293 (442)
88 cd08763 Cyt_b561_CYB561 Verteb 26.4 1.5E+02 0.0033 23.1 4.7 26 217-242 40-65 (143)
89 PF04835 Pox_A9: A9 protein co 25.7 1.9E+02 0.0041 18.6 4.4 33 51-84 20-52 (54)
90 PF03134 TB2_DP1_HVA22: TB2/DP 24.6 1.9E+02 0.0041 20.4 4.7 44 186-231 2-47 (94)
91 COG3949 Uncharacterized membra 23.6 5.6E+02 0.012 23.2 9.0 25 32-60 194-218 (349)
92 PRK04949 putative sulfate tran 23.6 4.7E+02 0.01 22.4 9.8 47 40-92 18-64 (251)
93 TIGR02711 symport_actP cation/ 23.4 6.6E+02 0.014 24.0 15.1 27 49-75 289-315 (549)
94 PF02417 Chromate_transp: Chro 23.3 1.1E+02 0.0024 24.3 3.6 57 22-78 9-69 (169)
95 PF07125 DUF1378: Protein of u 23.0 2.2E+02 0.0048 18.4 4.2 28 218-245 6-33 (59)
96 TIGR02230 ATPase_gene1 F0F1-AT 20.9 2.8E+02 0.0061 20.3 4.9 16 223-238 79-94 (100)
97 cd08762 Cyt_b561_CYBASC3 Verte 20.9 3.2E+02 0.007 22.3 5.8 68 51-122 67-134 (179)
98 smart00665 B561 Cytochrome b-5 20.5 3.7E+02 0.0079 20.0 5.9 25 218-242 34-58 (129)
99 PLN02810 carbon-monoxide oxyge 20.3 5.4E+02 0.012 21.9 7.8 69 51-123 76-144 (231)
No 1
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=4e-36 Score=271.37 Aligned_cols=215 Identities=21% Similarity=0.302 Sum_probs=192.3
Q ss_pred CccccCChhhHHHHHHHHHHHHHHHccCchhHHHHHhhhCCCCccccchh---hhhHHHHHHHHHHHHhhhhhhhhccCC
Q 025701 5 SGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMK---KASTMSIITTTIFYLFCGGFGYAAFGD 81 (249)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~gi~~faf~~h~~~~~I~~~m~~p~~~~~~~~---~~~~~s~~i~~~~y~~~g~~GY~~fG~ 81 (249)
++++......++.+....+|+.+|||+++.++.|++++||+| ++|. +++..+|.++.++|+.+|++||++|||
T Consensus 229 ~~~~~~~~~~~~~~~~lf~GtaifafEGig~VLPlEn~Mk~P----~~F~g~~gVLn~~M~~V~~ly~~~Gf~GYl~fG~ 304 (449)
T KOG1304|consen 229 PPTSDLPAVTGWSGLPLFFGTAIFAFEGIGMVLPLENSMKKP----QKFPGPFGVLNLGMGIVTLLYIFLGFFGYLAFGD 304 (449)
T ss_pred CCccccccccchhhhHHHHHHHHHHhccceEEEehhhcccCh----hhcCCccchHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 345545555667788899999999999999999999999999 9999 999999999999999999999999999
Q ss_pred cccccccccccCCCchHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHhhhCCCCCCCCCccccCCCCCCcCcCCcchh
Q 025701 82 NTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRL 161 (249)
Q Consensus 82 ~~~~~il~~~~~~~~~~~~~i~~i~~~i~~~~s~pl~~~p~~~~~e~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~r~ 161 (249)
++++.|+.|+| + .|+.+.+++.+++.++++||+|.+|..+++|+.+..+..++ + -++...
T Consensus 305 ~v~~sITLNLP--~-~~l~~~Vkl~~ai~I~ls~pLQ~yv~~eIi~~~i~~k~~~~----------------~-~~~~~~ 364 (449)
T KOG1304|consen 305 DVKGSITLNLP--Q-EILSQTVKLLLAIAIFLTYPLQFYVPIEIIEPGIRKKFSEN----------------R-KKLLEY 364 (449)
T ss_pred cccceEEecCC--c-cHHHHHHHHHHHHHHHHcCchhhhhhHHHHHHhHHHhcCcc----------------h-hHHHHH
Confidence 99999999999 3 68999999999999999999999999999999887654321 1 146778
Q ss_pred hHHHHHHHHHHHHHHhCCChHHHHHHHhhhhhhhhhhhhhhhhhhhhcccch---hhHHHHHHHHHHHHHHHHHHHHHHH
Q 025701 162 CFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEA---WTRKWVMLRVFSYVCFIVSTFGLVG 238 (249)
Q Consensus 162 ~~r~~~~~~~~~iAi~vP~~~~vl~l~Ga~~~~~l~filP~l~~l~~~~~~~---~~~~~~~~~~~~~~g~~~~v~g~~~ 238 (249)
.+|+.+++++..+|..+||++.+++|+||++++.+.+++|++++++....+. +.++++.+.+++++|+++++.|||+
T Consensus 365 ~~R~~lVllt~~iA~~iPnL~~fisLVGs~~~s~L~li~P~liel~~~~~~~~~~~~~~~~~ni~l~~~G~~~~v~Gty~ 444 (449)
T KOG1304|consen 365 ALRVFLVLLTFLIAVAVPNLALFISLVGSVSCSLLALIFPPLIELITFYPEGKGRFMWKLIKNIVLIVFGVFGFVYGTYT 444 (449)
T ss_pred HHHHHHHHHHHHHHHHCCcHHhhHHHHHHHHHHHHHHHccHHHHHHHhcccccCceehHHHHHHHHHHHHHHHHHHHHhh
Confidence 8999999999999999999999999999999999999999999999765443 3577889999999999999999999
Q ss_pred HHHHH
Q 025701 239 SIQGI 243 (249)
Q Consensus 239 si~~i 243 (249)
++.++
T Consensus 445 si~~i 449 (449)
T KOG1304|consen 445 SIKEI 449 (449)
T ss_pred hhhcC
Confidence 99763
No 2
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=6.6e-36 Score=272.90 Aligned_cols=206 Identities=42% Similarity=0.725 Sum_probs=191.1
Q ss_pred HHHHHHHHHHccCchhHHHHHhhhCCCCccccchhhhhHHHHHHHHHHHHhhhhhhhhccCCcccccccccccCCCchHH
Q 025701 20 AQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWL 99 (249)
Q Consensus 20 ~~~~gi~~faf~~h~~~~~I~~~m~~p~~~~~~~~~~~~~s~~i~~~~y~~~g~~GY~~fG~~~~~~il~~~~~~~~~~~ 99 (249)
|+++|++.|||++|..+||||++||+| ++|+|++..|+.+++.+|+.+++.||++|||+++++++.|++ .|.|+
T Consensus 231 f~a~g~iaFaf~gH~v~peIq~tMk~p----~~f~~~~lis~~~~~~~y~~vai~GY~aFG~~~~~~il~s~~--~p~~~ 304 (437)
T KOG1303|consen 231 FTALGIIAFAYGGHAVLPEIQHTMKSP----PKFKKALLISYIIVTFLYFPVAIIGYWAFGDSVPDNILLSLQ--PPTWL 304 (437)
T ss_pred hhhhhheeeeecCCeeeeehHhhcCCc----hhhhhHHHHHHHHHHHHHHHHHHhhhhhhccccchhhhhccc--CchhH
Confidence 999999999999999999999999998 779999999999999999999999999999999999999997 47899
Q ss_pred HHHHHHHHHHHHHhhhhccccchHHHHHHHHhhhCCCCCCCCCccccCCCCCCcCcCCcchhhHHHHHHHHHHHHHHhCC
Q 025701 100 IDLANAFIVIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFP 179 (249)
Q Consensus 100 ~~i~~i~~~i~~~~s~pl~~~p~~~~~e~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~r~~~r~~~~~~~~~iAi~vP 179 (249)
...+|+++.+|++.+++++.+|..+.+|++...++++ +. ++..++|.+.|+.+++.++++|+.+|
T Consensus 305 ~~~ani~i~~h~i~s~~i~a~pl~~~~E~~~~~~~~~--~~-------------~~~~~~R~~~Rt~~v~~~~~vA~~~P 369 (437)
T KOG1303|consen 305 IALANILIVLHLIGSYQIYAQPLFDVVEKLIGVKHPD--FK-------------KRSLVLRLLVRTFFVAVTTFVALSFP 369 (437)
T ss_pred HHHHHHHHHHHHhhhhhhhhcchHHHHHHHhccCCcc--cc-------------ccccceeeehhhHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999998765332 10 12347899999999999999999999
Q ss_pred ChHHHHHHHhhhhhhhhhhhhhhhhhhhhcccchhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhh
Q 025701 180 YFNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVF-SYVCFIVSTFGLVGSIQGIISA 246 (249)
Q Consensus 180 ~~~~vl~l~Ga~~~~~l~filP~l~~l~~~~~~~~~~~~~~~~~~-~~~g~~~~v~g~~~si~~ii~~ 246 (249)
+|+++++++||+...++++++|+++|++++|+++++.+|+.++.+ .++|+++++.+..+++++++.+
T Consensus 370 fFg~l~~lvGa~~~~p~t~ilP~~~yl~~~k~~~~s~~~~~~~~~~~~~~~~~~v~~~~~~~~~li~~ 437 (437)
T KOG1303|consen 370 FFGDLLSLVGAFLFWPLTFILPCLMYLLIKKPKRFSPKWLLNWVIILVVGLLLSVLAAVGGVRSLIID 437 (437)
T ss_pred ccHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhC
Confidence 999999999999999999999999999999999999999999888 7999999999999999998753
No 3
>PTZ00206 amino acid transporter; Provisional
Probab=100.00 E-value=3.9e-35 Score=272.44 Aligned_cols=206 Identities=19% Similarity=0.226 Sum_probs=175.0
Q ss_pred HHHHHHHHHHHHHccCchhHHHHHhhhCCCCccccchhhhhHHHHHHHHHHHHhhhhhhhhccCCccccccccccc-CCC
Q 025701 17 WLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFG-FYE 95 (249)
Q Consensus 17 ~~~~~~~gi~~faf~~h~~~~~I~~~m~~p~~~~~~~~~~~~~s~~i~~~~y~~~g~~GY~~fG~~~~~~il~~~~-~~~ 95 (249)
.+.+.++|+++|||.||.|.+|+++||||| +.+|+.+++..++.++.++|..+|++||++||++++++|+.|++ .++
T Consensus 256 ~~~~~algi~~faF~~h~~~~~i~~~M~~~--t~~~~~~v~~~s~~i~~~lY~~~G~~GYl~fG~~v~~~Illn~~p~~~ 333 (467)
T PTZ00206 256 NRAIEGLGVFIFAYVFQITAYEVYMDMTNR--SVGKFVLASTIAMGMCFTMYVLTAFFGYMDFGRNVTGSVLLMYDPVNE 333 (467)
T ss_pred hHHHhhhhHHHhhhhhhhhhHHHHHhhccc--chhHHHHHHHHHHHHHHHHHHHHHHhhhhccccccchHHHHhCCCCCC
Confidence 357899999999999999999999999998 67999999999999999999999999999999999999999995 333
Q ss_pred chHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHhhhCCCCCCCCCccccCCCCCCcCcCCcchhhHHHHHHHHHHHHH
Q 025701 96 PYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIA 175 (249)
Q Consensus 96 ~~~~~~i~~i~~~i~~~~s~pl~~~p~~~~~e~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~r~~~r~~~~~~~~~iA 175 (249)
+ ...++++++++.++.+||++.+|+|+.+++.+..+ .+ +.+ .|+|...+..++++++++|
T Consensus 334 ~--~~~v~~~~~~~~v~~sypL~~~p~r~~i~~~~~~~--~~---------~~~-------~~~~~~~~~~l~~~~l~iA 393 (467)
T PTZ00206 334 P--AIMVGFVGVLVKLFVSYALLGMACRNALYDVIGWD--AR---------KVA-------FWKHCIAVVTLSVVMLLCG 393 (467)
T ss_pred c--hhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHhCCC--cc---------cCc-------hhhHHHHHHHHHHHHHHHH
Confidence 3 56778888999999999999999999999876321 11 011 2566666667777788899
Q ss_pred HhCCChHHHHHHHhhhhhhhhhhhhhhhhhhhhcc---cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025701 176 MSFPYFNQVLGVIGGVIFWPLTIYFPVEMYFKQMN---IEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQGII 244 (249)
Q Consensus 176 i~vP~~~~vl~l~Ga~~~~~l~filP~l~~l~~~~---~~~~~~~~~~~~~~~~~g~~~~v~g~~~si~~ii 244 (249)
+++|+++.+++|+||++++.++|++|+++|++... ++...++|+.+++++++|++.++.|||+++++.+
T Consensus 394 i~vP~l~~vl~lvGa~~~~~l~fi~P~lf~l~~~~~~~~~~~~~~~~~~~~lli~Gv~~~v~Gt~~si~~~~ 465 (467)
T PTZ00206 394 LFIPKINTVLGFAGSISGGLLGFILPALLFMYSGGFTWQKVGPFYYISTYVVLITGVIAIVFGTGATIWGVT 465 (467)
T ss_pred hccCCHHHhhhhhhHHHHHHHHHHHHHHHHHhcCCccHHhhchHHHHHHHHHHHHHhheEEecchhHhhHHh
Confidence 99999999999999999999999999999998432 2222235577899999999999999999999876
No 4
>PLN03074 auxin influx permease; Provisional
Probab=100.00 E-value=1.3e-33 Score=261.96 Aligned_cols=221 Identities=19% Similarity=0.200 Sum_probs=184.2
Q ss_pred CCcCccccCChhhHHHHHHHHHHHHHHHccCchhHHHHHhhhCCCCccccchhhhhHHHHHHHHHHHHhhhhhhhhccCC
Q 025701 2 GSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGD 81 (249)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~gi~~faf~~h~~~~~I~~~m~~p~~~~~~~~~~~~~s~~i~~~~y~~~g~~GY~~fG~ 81 (249)
++.|+++ .+...++...+.+.++++|||++|..+|||++||||| ++|+++...++.++..+|..+|+.||++|||
T Consensus 219 ~~~~~~~-~~~~~~~~~~f~~~~~i~faf~g~~v~~~I~~~M~~P----~~F~~~~~l~~~~v~~~y~~~~~~gY~~fG~ 293 (473)
T PLN03074 219 GQVEGVK-HSGPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKP----QKFKYIYLAATLYVLTLTLPSAAAVYWAFGD 293 (473)
T ss_pred cCCCCCC-CCCchhHHHHHHHHHHHHHHhcccccHHHHHHhccCh----hcccchHHHHHHHHHHHHHHHHHeeeeeech
Confidence 4556665 4445678889999999999999999999999999999 8999999999999999999999999999999
Q ss_pred cccc--cccccccCCCchHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHhhhCCCCCCCCCccccCCCCCCcCcCCcc
Q 025701 82 NTPG--NLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPL 159 (249)
Q Consensus 82 ~~~~--~il~~~~~~~~~~~~~i~~i~~~i~~~~s~pl~~~p~~~~~e~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~ 159 (249)
++++ +.+.|+|. +. ...++++.+.++++.+|+++.+|..+.+|+....+ + . +..+.
T Consensus 294 ~~~~~s~~l~~lp~--~~-~~~~~~~~~~i~~~~sy~l~~~p~~~~~e~~~~~~--~----~-------------k~~~~ 351 (473)
T PLN03074 294 ELLTHSNAFSLLPR--SG-WRDAAVILMLIHQFITFGFACTPLYFVWEKAIGVH--D----T-------------KSICL 351 (473)
T ss_pred hhhhchhHHhcCCC--ch-HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhccc--c----c-------------ccHHH
Confidence 9864 56777873 22 46889999999999999999999999998875431 1 0 11367
Q ss_pred hhhHHHHHHHHHHHHHHhCCChHHHHHHHhhhhhhhhhhhhhhhhhhhhcccc-------------hhhH--HHHHHHHH
Q 025701 160 RLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIE-------------AWTR--KWVMLRVF 224 (249)
Q Consensus 160 r~~~r~~~~~~~~~iAi~vP~~~~vl~l~Ga~~~~~l~filP~l~~l~~~~~~-------------~~~~--~~~~~~~~ 224 (249)
|+++|+.+++.++++|+.+|+|+++++|+||++++.++|++|+++|++.++++ ..++ +.+.++++
T Consensus 352 r~~~R~~lv~~~~~iA~~IP~fg~llsLvGs~~~s~l~~i~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~i 431 (473)
T PLN03074 352 RALARLPVVVPIWFLAIIFPFFGPINSAVGALLVSFTVYIIPSLAHMLTYRSASARQNAAEKPPFFLPSWTGMYVVNAFV 431 (473)
T ss_pred HHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhcccCCcccCCccceehhhhhHH
Confidence 89999999999999999999999999999999999999999999999854321 1112 23778888
Q ss_pred HHH-HHHHHHHHHHHHHHHHHhhhcC
Q 025701 225 SYV-CFIVSTFGLVGSIQGIISAKLS 249 (249)
Q Consensus 225 ~~~-g~~~~v~g~~~si~~ii~~~~~ 249 (249)
+++ |+++++.|+|+|++++++++++
T Consensus 432 iv~~~~~g~~~G~~asi~~ii~~~~~ 457 (473)
T PLN03074 432 VVWVLVVGFGFGGWASMTNFVRQIDT 457 (473)
T ss_pred HHhhhhHhhccchHHHHHHHHHhhhh
Confidence 875 5555689999999999998864
No 5
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=99.97 E-value=3.6e-33 Score=254.37 Aligned_cols=216 Identities=25% Similarity=0.372 Sum_probs=181.8
Q ss_pred hhhHHHHHHHHHHHHHHHccCchhHHHHHhhhCCCCccc-cchhhhhHHHHHHHHHHHHhhhhhhhhccCCccccccccc
Q 025701 12 SIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPAN-QTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTG 90 (249)
Q Consensus 12 ~~~~~~~~~~~~gi~~faf~~h~~~~~I~~~m~~p~~~~-~~~~~~~~~s~~i~~~~y~~~g~~GY~~fG~~~~~~il~~ 90 (249)
+..+++++++++|+++|||.||.+++|+++|||+| ++ ++++++...++.+++++|+.+|.+||++||+++++|+++|
T Consensus 187 ~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~~--~~~~~~~~~~~~s~~~~~~~y~~~g~~gy~~fg~~~~~~il~n 264 (409)
T PF01490_consen 187 PFISFSGFFSAFGIIIFAFSCHPNLPPIQSEMKDP--SKFKKMKKVLSISMIICFIIYLLFGIFGYLAFGDSVQGNILLN 264 (409)
T ss_pred ccchhhHHHHhhhhhhhhhhcccccceeeeeccCC--ccccccceeeeehhhhhhHHhhhhhhcccceeeeeecchhhhc
Confidence 45678899999999999999999999999999998 44 4566999999999999999999999999999999999999
Q ss_pred ccCCCchHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHhhhCCCCCCCCCccccCCCCCCcCcCCcchhhHHHHHHHH
Q 025701 91 FGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVS 170 (249)
Q Consensus 91 ~~~~~~~~~~~i~~i~~~i~~~~s~pl~~~p~~~~~e~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~r~~~r~~~~~~ 170 (249)
++++ ++...++++++.++++.+||++.+|.++.+|+.+..+...++...+ + +...+++|...|+.+++.
T Consensus 265 ~~~~--~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~~~~~~~~~~~----~-----~~~~~~~~~~~~~~~~~~ 333 (409)
T PF01490_consen 265 LPND--DVLIIIARILLVISLLLSYPLQLFPARNSLENLLFKRAASSRDSPK----N-----TPSSRWLRYLIRIILVLL 333 (409)
T ss_pred CCCc--ccccccccccchhhhhhccccccchhHhhhhhheeccccccccccc----c-----ccccceeeeeeecchhhh
Confidence 9953 3578999999999999999999999999999988643000000000 0 012257889999999999
Q ss_pred HHHHHHhCCChHHHHHHHhhhhhhhhhhhhhhhhhhhhcccchhhHHH-----HHHHHHHHHHHHHHHHHHHHHH
Q 025701 171 VTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKW-----VMLRVFSYVCFIVSTFGLVGSI 240 (249)
Q Consensus 171 ~~~iAi~vP~~~~vl~l~Ga~~~~~l~filP~l~~l~~~~~~~~~~~~-----~~~~~~~~~g~~~~v~g~~~si 240 (249)
++++|+.+|+++++++++||++++.++|++|+++|++.+++++.+.++ ...+++.++|++.++.|+|+++
T Consensus 334 ~~~iA~~vp~~~~i~~l~Ga~~~~~i~fi~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i 408 (409)
T PF01490_consen 334 SFLIAIFVPNFGDIISLVGALFGSFISFILPALLYLKLFKRKRNSFGWWWILSILNWIIIVFGVVLMVFGTYQSI 408 (409)
T ss_pred hhhhhhhccchhhhhcccchHHHHhHHHHHHHHHHHHhhcccccccceeehhhccceEEEEEeeehhHHhHHHHc
Confidence 999999999999999999999999999999999999987766543322 3356778899999999999875
No 6
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]
Probab=99.96 E-value=6.2e-29 Score=225.91 Aligned_cols=216 Identities=18% Similarity=0.293 Sum_probs=182.7
Q ss_pred hhhHHHHHHHHHHHHHHHccCchhHHHHHhhhCCCCccccchhhhhHHHHHHHHHHHHhhhhhhhhccCCcccccccccc
Q 025701 12 SIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGF 91 (249)
Q Consensus 12 ~~~~~~~~~~~~gi~~faf~~h~~~~~I~~~m~~p~~~~~~~~~~~~~s~~i~~~~y~~~g~~GY~~fG~~~~~~il~~~ 91 (249)
+..++++.+.++++++|||.||.|+.++++||||| +++++.++...+...+.++|..+|.+||++|||++.+|++.++
T Consensus 189 ~~~~~~~~~~~~pi~~faf~Ch~n~~~i~~El~~~--s~~~i~~v~~~~~~~~~~iy~~~g~~GYL~Fg~~v~~n~l~~~ 266 (411)
T KOG1305|consen 189 NLSSFSSLFYALPIFVFAFTCHSNVFPIYNELKDR--SVKKIQRVSNIAIILATLIYLLTGLFGYLTFGDLVKGNLLHNY 266 (411)
T ss_pred CcchhhhhhhhhhhhheeeeccccceeeeeeeeCc--hHHHHHHHHHHHHHHHHHHHHHHHHhhhheecccchHHHHhcC
Confidence 33444899999999999999999999999999998 8899999999999999999999999999999999999999999
Q ss_pred cCCCch----HHHHHHHHHHHHHHHhhhhccccchHHHHHHHHhhhCCCCCCCCCccccCCCCCCcCcCCcchhhHHHHH
Q 025701 92 GFYEPY----WLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVY 167 (249)
Q Consensus 92 ~~~~~~----~~~~i~~i~~~i~~~~s~pl~~~p~~~~~e~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~r~~~r~~~ 167 (249)
+..+.. +....++..+.++.+.++|+..+|+|..+++......|+++ ...+.++++.+..+
T Consensus 267 ~~~~~~~l~~~~~~~vr~~~~~~~~l~~pi~~fPlr~~l~~~~~~~~~~~~---------------~~s~~r~~~itl~l 331 (411)
T KOG1305|consen 267 DSILNNLLRSFPLLCVRLRIAVAVLLTFPIVLFPLRMNLDELLFPYQPGLT---------------SFSGKRHFVITLLL 331 (411)
T ss_pred CcccchhHhhhhHHHHHHHHHHHHHHHHHHHhchHHHHHHHHhcccCCCCC---------------CccceehhHHHHHH
Confidence 864432 13578899999999999999999999999888765443321 01124555666677
Q ss_pred HHHHHHHHHhCCChHHHHHHHhhhhhhhhhhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 025701 168 VVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQGIISA 246 (249)
Q Consensus 168 ~~~~~~iAi~vP~~~~vl~l~Ga~~~~~l~filP~l~~l~~~~~~~~~~~~~~~~~~~~~g~~~~v~g~~~si~~ii~~ 246 (249)
+.+..+.|+.+|+++.+++++||++++.++||+|+++|++.+|. .+++....+...++|+..+.+|++.-+.++..+
T Consensus 332 l~~~~l~ai~~p~i~~i~~~vGAT~~~~i~FI~P~~~yl~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~ 408 (411)
T KOG1305|consen 332 LIFTFLLAIFVPSIGTIFGFVGATSSTSISFILPALYYLKASKK--KSREPLGALIFLILGVLLSIIGVAVMIYDLLAK 408 (411)
T ss_pred HHHHHHHHHHhccHHHHHHHhhhhhhhhhHHHHHHHhhheeecc--ccccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 88888999999999999999999999999999999999998776 333445566777899999999999988887764
No 7
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=99.94 E-value=4.8e-29 Score=215.75 Aligned_cols=220 Identities=19% Similarity=0.253 Sum_probs=187.4
Q ss_pred HHHHHHHHHHHHHHccCchhHHHHHhhhCCCCccccchhhhhHHHHHHHHHHHHhhhhhhhhccCCcccccccccccCCC
Q 025701 16 MWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYE 95 (249)
Q Consensus 16 ~~~~~~~~gi~~faf~~h~~~~~I~~~m~~p~~~~~~~~~~~~~s~~i~~~~y~~~g~~GY~~fG~~~~~~il~~~~~~~ 95 (249)
.-++-.++|+++|+|+.|..+|.++..|++| ++|...+.++-...+++-..+|..||++||+++|+.|.+|+|.
T Consensus 301 i~~fPisvG~iVFsYTSqIFLP~LEGNM~~p----s~Fn~Ml~WsHIAAaVfK~~Fg~~~fLTf~~~TqevItnnLp~-- 374 (524)
T KOG4303|consen 301 INTFPISVGMIVFSYTSQIFLPNLEGNMKNP----SQFNVMLKWSHIAAAVFKVVFGMLGFLTFGELTQEVITNNLPN-- 374 (524)
T ss_pred cccCceEEEEEEEeeeceeeccccccccCCh----hHheeeeehHHHHHHHHHHHHHHheeeeechhhHHHHhcCCCc--
Confidence 3344557899999999999999999999999 8999999999999999999999999999999999999999983
Q ss_pred chHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHhhhCCCCCCCCCccccCCCCCCcCcCCcchhhHHHHHHHHHHHHH
Q 025701 96 PYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIA 175 (249)
Q Consensus 96 ~~~~~~i~~i~~~i~~~~s~pl~~~p~~~~~e~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~r~~~r~~~~~~~~~iA 175 (249)
.....++|+.+++..+.|||+-.+.+.+.+|+-+....|+..+ +.-+ .++.+.+-+...+|..+++++.+.|
T Consensus 375 -qsfk~~VN~fLV~KALLSYPLPfyAAvelLe~nlF~g~p~t~F-pscy------s~Dg~Lk~WgltlR~~lvvfTllmA 446 (524)
T KOG4303|consen 375 -QSFKILVNLFLVVKALLSYPLPFYAAVELLENNLFLGYPQTPF-PSCY------SPDGSLKEWGLTLRIILVVFTLLMA 446 (524)
T ss_pred -cchhhhhhHHHHHHHHHcCCchHHHHHHHHHHhhhcCCCCCCC-ceee------CCCcchhhheeeeeeHHHHHHHHHH
Confidence 2368899999999999999999999999999877665444222 1100 1122333344567899999999999
Q ss_pred HhCCChHHHHHHHhhhhhhhhhhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 025701 176 MSFPYFNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQGIISAKLS 249 (249)
Q Consensus 176 i~vP~~~~vl~l~Ga~~~~~l~filP~l~~l~~~~~~~~~~~~~~~~~~~~~g~~~~v~g~~~si~~ii~~~~~ 249 (249)
+++|+|..+|+|+|++.++.++||+|++||++++.++.-..++..+..++++|+..++.|.|.|..++++++.+
T Consensus 447 i~vPhf~~LMGl~Gs~TGtmLsFiwP~lFHl~ik~~~L~~~e~~fD~~Ii~~G~~~~vsG~y~S~~~Li~A~~~ 520 (524)
T KOG4303|consen 447 ISVPHFVELMGLVGSITGTMLSFIWPALFHLYIKEKTLNNFEKRFDQGIIIMGCSVCVSGVYFSSMELIRAINS 520 (524)
T ss_pred HHhHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHhhhhHHHhhheeEEEEeeeEEEEeEehhhHHHHHHHhc
Confidence 99999999999999999999999999999999987776666778888889999999999999999999998753
No 8
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=99.62 E-value=1.7e-14 Score=132.46 Aligned_cols=207 Identities=14% Similarity=0.186 Sum_probs=143.7
Q ss_pred hhHHHHHHHHHHHHHHHccCchhHHHHHhhhCCCCccccchhhhhHHHHHHHHHHHHhhhhhhhhccCCccccccccccc
Q 025701 13 IEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFG 92 (249)
Q Consensus 13 ~~~~~~~~~~~gi~~faf~~h~~~~~I~~~m~~p~~~~~~~~~~~~~s~~i~~~~y~~~g~~GY~~fG~~~~~~il~~~~ 92 (249)
+.++.+...++|+++|||+||+|++++++||+++ ++++.+|+...+..+..++|..+++++|..+|+++.++++++.+
T Consensus 189 ~~~~~~~~~~ipv~vfsF~~h~~i~si~~~~~~~--~~~~~~k~~~~~~~~~~vlyi~~~~~~~~~~~~~~~~~il~~~~ 266 (415)
T COG0814 189 QSFWKYLLLAIPVFVFSFGFHGNIPSLVNYMRKN--SKKAVRKAILIGSLIALVLYILVGFFVFGCFGSLVFGNILAAKE 266 (415)
T ss_pred hhhHHHHHHHhhHHHhhhhCCccchHHHHHhccc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHccC
Confidence 4677788899999999999999999999999997 44459999999999999999999999999999999999999997
Q ss_pred CCCchHHHHHHHHHHHHHHHhhhhccccchHH--------------HHHHHHhhhCCCCCCCCCccccCCCCCCcCcCCc
Q 025701 93 FYEPYWLIDLANAFIVIHLVGGYQVYSQPIFA--------------HFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNP 158 (249)
Q Consensus 93 ~~~~~~~~~i~~i~~~i~~~~s~pl~~~p~~~--------------~~e~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~ 158 (249)
..+ . ..........+...+++.+.++.+. .+++..... ++ + + .++..+
T Consensus 267 ~~~--~-~l~~~~~~~~~~~~~~~~~~f~~~Ai~tSFlgv~lg~~~~~~~~~~~~-------~~-~----~---~r~~~~ 328 (415)
T COG0814 267 QNI--S-LLSALAGVINSPILSIALNIFALFAIATSFLGVYLGLFEGLADLFKKS-------NS-K----P---GRKKTG 328 (415)
T ss_pred chH--H-HHHHHHHhhcchHHHHHHHHHHHHHHHHHHhCchhhHHHhhhHHHHhc-------cC-c----c---cchhhh
Confidence 422 1 1122222233333455555555543 333333220 00 0 0 011112
Q ss_pred chhh--HHHHHHHHHHHHHHhCCChHHHHHHHhhhhhhhhhhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHH
Q 025701 159 LRLC--FRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGL 236 (249)
Q Consensus 159 ~r~~--~r~~~~~~~~~iAi~vP~~~~vl~l~Ga~~~~~l~filP~l~~l~~~~~~~~~~~~~~~~~~~~~g~~~~v~g~ 236 (249)
++.- .....++....++...|..+.+++.+|+.....+.++.|...+.+....+.+..++...+++.++|+..++.-.
T Consensus 329 ~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~iga~i~~~ll~~~p~~~~~~~~~~~~~~g~~~~~~~v~~~Gi~~~~~~~ 408 (415)
T COG0814 329 LLTFLPPLIFALLYPWGFAIALGYAGGLIATIGAPIIPALLFIKPRKLIYKLPALKVYGGNFLLLLLVLLFGILVILSPF 408 (415)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeecCCCchhHHHHHHHHHHHHHHHH
Confidence 2222 23334566777899999999999999999999999999999887764433332212455667788887777666
Q ss_pred HHH
Q 025701 237 VGS 239 (249)
Q Consensus 237 ~~s 239 (249)
++.
T Consensus 409 ~~~ 411 (415)
T COG0814 409 LAT 411 (415)
T ss_pred HHH
Confidence 544
No 9
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=99.13 E-value=6.5e-10 Score=100.91 Aligned_cols=172 Identities=9% Similarity=0.024 Sum_probs=126.1
Q ss_pred HHHHHHHHHHHHHHHccCchhHHHHHhhhCCCCccccchhhhhHHHHHHHHHHHHhhhhhhhhccCCccccc--------
Q 025701 15 KMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGN-------- 86 (249)
Q Consensus 15 ~~~~~~~~~gi~~faf~~h~~~~~I~~~m~~p~~~~~~~~~~~~~s~~i~~~~y~~~g~~GY~~fG~~~~~~-------- 86 (249)
+..+.+.+++...++|++|.+++++.+|++|| +++.+|++..+..++.++|+.+........+.+.-.+
T Consensus 176 ~~~~~~~a~~~~~~~fg~~~~i~~~~~~~~~~---~k~i~raii~g~~i~~~lY~l~~~~~~g~~~~~~l~~~~~~~~~~ 252 (381)
T TIGR00837 176 YWPYILSALPVCLTSFGFHGNVPSLYKYYDGN---VKKVKKSILIGSAIALVLYILWQLATMGNLPRSEFLPIIAKGGNL 252 (381)
T ss_pred cHHHHHHHHHHHHHHHHcccccHHHHHHhccC---HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHcCCCh
Confidence 45567889999999999999999999999864 5899999999999999999977665555444322111
Q ss_pred --ccccccC-CCchHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHhhhCCCCCCCCCccccCCCCCCcCcCCcchhhH
Q 025701 87 --LLTGFGF-YEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCF 163 (249)
Q Consensus 87 --il~~~~~-~~~~~~~~i~~i~~~i~~~~s~pl~~~p~~~~~e~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~r~~~ 163 (249)
..+.+.. .+..|...+..+...+.+..|+.-.....+|.+.+.++.+.+ +.+|...
T Consensus 253 ~~l~~~~~~~~~~~~~~~~v~~~~~~al~tS~~g~~l~~~d~l~~~~~~~~~---------------------~~~~~~~ 311 (381)
T TIGR00837 253 DGLVNALQGVLKSSAIELALELFSNFALASSFLGVTLGLFDYLADLFKFDDS---------------------KKGRFKT 311 (381)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc---------------------cCCCchh
Confidence 1111111 013345667777888888999988888888887776654211 0123334
Q ss_pred HHHHHHHHHHHHHhCCChH-HHHHHHhhhhhhhhhhhhhhhhhhhhccc
Q 025701 164 RTVYVVSVTAIAMSFPYFN-QVLGVIGGVIFWPLTIYFPVEMYFKQMNI 211 (249)
Q Consensus 164 r~~~~~~~~~iAi~vP~~~-~vl~l~Ga~~~~~l~filP~l~~l~~~~~ 211 (249)
..+..+...++|.++|+.. ..++..| +.+..+.+++|++++.+.||+
T Consensus 312 ~~~~~~~pl~~a~~~p~~~~~~l~~~G-~~~~~~~~~~p~l~~~~~r~~ 359 (381)
T TIGR00837 312 GLLTFLPPLVFALFYPEGFLYAIGYAG-LAATIWAVIIPALLAWKARKK 359 (381)
T ss_pred hhhhHHhHHHHHHHhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhc
Confidence 4556678888899999877 8999999 888899999999999987654
No 10
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=99.01 E-value=1.1e-08 Score=93.41 Aligned_cols=175 Identities=19% Similarity=0.252 Sum_probs=128.1
Q ss_pred hhhHHHHHHHHHHHHHHHccCchhHHHHHhhhCCCCccccchhhhhHHHHHHHHHHHHhh--hhhhhh---------ccC
Q 025701 12 SIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFC--GGFGYA---------AFG 80 (249)
Q Consensus 12 ~~~~~~~~~~~~gi~~faf~~h~~~~~I~~~m~~p~~~~~~~~~~~~~s~~i~~~~y~~~--g~~GY~---------~fG 80 (249)
...++...+.+++++++||+.|..+|++.+.+++ ++++.+|++..+..+..++|++. .+.|=+ .-+
T Consensus 179 ~~~~~~~~~~~lPv~~~Sf~f~~ivPsl~~~~~~---d~~k~~~ai~~Gs~i~lv~yl~w~~~~lg~l~~~~~~~~~~~~ 255 (394)
T PF03222_consen 179 SPSDWSYILPALPVLVFSFGFHNIVPSLVKYLGG---DPKKIRKAIIIGSLIPLVMYLLWVFSILGSLPREQFAEAIAQG 255 (394)
T ss_pred ccccHHHHHHHHHHHHHHHHHHhhhHHHHHHhCc---cHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 3467777789999999999999999999999996 46899999999999999888754 333311 112
Q ss_pred Ccccc--cccccccCCCchHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHhhhCCCCCCCCCccccCCCCCCcCcCCc
Q 025701 81 DNTPG--NLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNP 158 (249)
Q Consensus 81 ~~~~~--~il~~~~~~~~~~~~~i~~i~~~i~~~~s~pl~~~p~~~~~e~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~ 158 (249)
++..+ ..+.+.. +..+...++++.-.+.+.+||-=.....+|.+++.++. +++ +.
T Consensus 256 ~~~~~~~~~~~~~~--~s~~i~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~k~--~~~-------------------~~ 312 (394)
T PF03222_consen 256 GNVSALVSALANVS--GSPWISILGSIFAFFAIATSFLGVYLGLFDFLADLFKL--KNN-------------------SS 312 (394)
T ss_pred CChHHHHHHHHhhc--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--Ccc-------------------cc
Confidence 22211 1222222 23356677788888999999988888899998887754 110 12
Q ss_pred chhhHHHHHHHHHHHHHHhCCC-hHHHHHHHhhhhhhhhhhhhhhhhhhhhcccch
Q 025701 159 LRLCFRTVYVVSVTAIAMSFPY-FNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEA 213 (249)
Q Consensus 159 ~r~~~r~~~~~~~~~iAi~vP~-~~~vl~l~Ga~~~~~l~filP~l~~l~~~~~~~ 213 (249)
.|.....+..+..+++|+..|+ |-..+++.| ...+.+..++|+++..|.|++++
T Consensus 313 ~r~~~~~ltf~ppl~~a~~~p~~F~~al~~aG-~~~~il~~ilP~~m~~~~r~~~~ 367 (394)
T PF03222_consen 313 GRLKTWLLTFLPPLIFALLFPNGFLIALGYAG-IGIAILLGILPALMVWKARKRKP 367 (394)
T ss_pred chHHHHHHHHHhHHHHHHHCcHHHHHHHHhhc-HHHHHHHHHHHHHHHHHHHcccC
Confidence 3444445556778888999985 778999999 99999999999999999775543
No 11
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=98.84 E-value=6.1e-08 Score=88.72 Aligned_cols=190 Identities=12% Similarity=0.118 Sum_probs=132.9
Q ss_pred HHHHHHHHHHHccCchhHHHHHhhhCCCCccccchhhhhHHHHHHHHHHHHhhhhhhhhccCCc-----ccc-----ccc
Q 025701 19 VAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDN-----TPG-----NLL 88 (249)
Q Consensus 19 ~~~~~gi~~faf~~h~~~~~I~~~m~~p~~~~~~~~~~~~~s~~i~~~~y~~~g~~GY~~fG~~-----~~~-----~il 88 (249)
...+++++++||+.|.++|++.+.+++ +.+|.+|++..+..+..++|++-=......-+.+ .++ +++
T Consensus 183 ~~~~iPvl~~SFgfh~iIpsl~~y~~~---~~~~~~k~i~~Gs~i~li~yl~W~~~~lg~l~~~~~~~~~~~~~~~~~~l 259 (403)
T PRK15132 183 ALSAIPVIFTSFGFHGSVPSIVSYMGG---NIRKLRWVFIIGSAIPLVAYIFWQLATLGSIDSTTFMGLLANHAGLNGLL 259 (403)
T ss_pred HHHHHHHHHHHhhCCcccHHHHHHhCc---CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHccCchHHHH
Confidence 778999999999999999999999986 4689999999999999999874433333322222 111 233
Q ss_pred ccccCC-CchHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHhhhCCCCCCCCCccccCCCCCCcCcCCcchhhHHHHH
Q 025701 89 TGFGFY-EPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVY 167 (249)
Q Consensus 89 ~~~~~~-~~~~~~~i~~i~~~i~~~~s~pl~~~p~~~~~e~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~r~~~r~~~ 167 (249)
+.++.. +..+...++.+...+.+.+||-=.....+|.+.+.++.+ ++ ...|...-.+.
T Consensus 260 ~~l~~~~~~~~~~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~~~~--~~-------------------~~~r~~~~~l~ 318 (403)
T PRK15132 260 QALREVVASPHVELAVHLFADLALATSFLGVALGLFDYLADLFQRR--NT-------------------VGGRLQTGLIT 318 (403)
T ss_pred HHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC--cc-------------------ccCCchhehhh
Confidence 333321 233566777788888889998888888899888877532 10 12244444567
Q ss_pred HHHHHHHHHhCCC-hHHHHHHHhhhhhhhhhhhhhhhhhhhhcccc---hhhH--HHHHHHHHHHHHHHHHH
Q 025701 168 VVSVTAIAMSFPY-FNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIE---AWTR--KWVMLRVFSYVCFIVST 233 (249)
Q Consensus 168 ~~~~~~iAi~vP~-~~~vl~l~Ga~~~~~l~filP~l~~l~~~~~~---~~~~--~~~~~~~~~~~g~~~~v 233 (249)
.+..+++|+..|+ |...+++.|.. .+.+.+++|+++-.|.|+++ .++. .+...++..++|++..+
T Consensus 319 flppli~a~~~P~~F~~al~~aG~~-~ail~~ilP~~m~~~~r~~~~~~~y~v~gg~~~~~~v~~~G~~~i~ 389 (403)
T PRK15132 319 FLPPLAFALFYPRGFVMALGYAGVA-LAVLALLLPSLLVWQSRKQNPQAGYRVKGGRPALALVFLCGIAVIG 389 (403)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhcCCCCCccCCCChHHHHHHHHHHHHHHH
Confidence 7888999999996 67788888864 77999999999999877544 2221 23445555566665544
No 12
>PRK10483 tryptophan permease; Provisional
Probab=98.76 E-value=2.7e-07 Score=84.53 Aligned_cols=169 Identities=12% Similarity=0.056 Sum_probs=121.9
Q ss_pred HHHHHHHHHHHHHccCchhHHHHHhhhCCCCccccchhhhhHHHHHHHHHHHHh--hhhhhhhc---------cCCcccc
Q 025701 17 WLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLF--CGGFGYAA---------FGDNTPG 85 (249)
Q Consensus 17 ~~~~~~~gi~~faf~~h~~~~~I~~~m~~p~~~~~~~~~~~~~s~~i~~~~y~~--~g~~GY~~---------fG~~~~~ 85 (249)
...+.+++++++||+.|.++|++.+.+++ +.++.+|++..+..+..++|++ ..+.|-.. -|+++ +
T Consensus 192 ~~~~~alPvl~~SFgfh~iIPsl~~y~~~---d~~kir~~I~iGs~Iplv~yl~W~~~~lg~l~~~~~~~~~~~~~ni-~ 267 (414)
T PRK10483 192 PYLLMTLPFCLASFGYHGNVPSLMKYYGK---DPKTIVKCLVYGTLMALALYTIWLLATMGNIPRPEFIGIAEKGGNI-D 267 (414)
T ss_pred HHHHHHHHHHHhhccCCCcchHHHHHhCc---CHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCCh-H
Confidence 34678999999999999999999999987 3479999999999999999986 33333221 22222 1
Q ss_pred cccccccCC-CchHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHhhhCCCCCCCCCccccCCCCCCcCcCCcchhhHH
Q 025701 86 NLLTGFGFY-EPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFR 164 (249)
Q Consensus 86 ~il~~~~~~-~~~~~~~i~~i~~~i~~~~s~pl~~~p~~~~~e~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~r~~~r 164 (249)
..++.++.. +..+...+..+...+.+.+||-=.....+|.+.+.++.+ ++ ...|...-
T Consensus 268 ~L~~~l~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~d~l~D~~k~~--~~-------------------~~~r~~~~ 326 (414)
T PRK10483 268 VLVQALSGVLNSRSLDLLLVVFSNFAVASSFLGVTLGLFDYLADLFGFD--DS-------------------AMGRFKTA 326 (414)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--Cc-------------------cccceeee
Confidence 111222211 223455667777788889998888888899888877542 10 01233333
Q ss_pred HHHHHHHHHHHHhCCC-hHHHHHHHhhhhhhhhhhhhhhhhhhhhccc
Q 025701 165 TVYVVSVTAIAMSFPY-FNQVLGVIGGVIFWPLTIYFPVEMYFKQMNI 211 (249)
Q Consensus 165 ~~~~~~~~~iAi~vP~-~~~vl~l~Ga~~~~~l~filP~l~~l~~~~~ 211 (249)
.+..+...++|+..|+ |-..++..|.. ++.+.-++|+++-.+.||+
T Consensus 327 ~ltflPPl~~al~~P~~Fl~AL~yAG~~-~~il~~ilP~lM~~~~Rk~ 373 (414)
T PRK10483 327 LLTFLPPVVGGLLFPNGFLYAIGYAGLA-ATIWAAIVPALLARASRKR 373 (414)
T ss_pred hhhHhhHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhc
Confidence 4667888999999997 78899999977 6688899999999998764
No 13
>PRK09664 tryptophan permease TnaB; Provisional
Probab=98.64 E-value=1e-06 Score=80.69 Aligned_cols=169 Identities=12% Similarity=0.091 Sum_probs=120.5
Q ss_pred HHHHHHHHHHHHccCchhHHHHHhhhCCCCccccchhhhhHHHHHHHHHHHHhh--hhhhh---------hccCCccccc
Q 025701 18 LVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFC--GGFGY---------AAFGDNTPGN 86 (249)
Q Consensus 18 ~~~~~~gi~~faf~~h~~~~~I~~~m~~p~~~~~~~~~~~~~s~~i~~~~y~~~--g~~GY---------~~fG~~~~~~ 86 (249)
..+.++|++.+||+.|.++|++.+.+++ +.++.+|++..+..+..++|++. ...|= ...|+++.+.
T Consensus 194 ~i~~alPVl~~SFgfh~iIPsl~~y~~~---d~~~~~kaIl~Gs~IpLviY~~W~~~ilG~lp~~~~~~~~~~g~nv~~l 270 (415)
T PRK09664 194 YIFMALPVCLASFGFHGNIPSLIICYGK---RKDKLIKSVVFGSLLALVIYLFWLYCTMGNIPRESFKAIISSGGNVDSL 270 (415)
T ss_pred HHHHHHHHHHHhhhCCCcchHHHHHhCc---cHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCCchHH
Confidence 4677999999999999999999999986 45888899998888888888532 22231 1223333321
Q ss_pred ccccccCCCchHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHhhhCCCCCCCCCccccCCCCCCcCcCCcchhhHHHH
Q 025701 87 LLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTV 166 (249)
Q Consensus 87 il~~~~~~~~~~~~~i~~i~~~i~~~~s~pl~~~p~~~~~e~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~r~~~r~~ 166 (249)
+..-.+..+..+...+.++...+.+.+||-=.....+|.+.+.++.+ ++ +..|...-.+
T Consensus 271 ~~s~~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~D~l~D~~~~~--~~-------------------~~~r~~~~~l 329 (415)
T PRK09664 271 VKSFLGTKQHGIIEFCLLVFSNLAVASSFFGVTLGLFDYLADLFKID--NS-------------------HGGRFKTVLL 329 (415)
T ss_pred HHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--Cc-------------------cccceeeehh
Confidence 11111111234566777788888899999888888899888877542 10 1123333346
Q ss_pred HHHHHHHHHHhCCC-hHHHHHHHhhhhhhhhhhhhhhhhhhhhccc
Q 025701 167 YVVSVTAIAMSFPY-FNQVLGVIGGVIFWPLTIYFPVEMYFKQMNI 211 (249)
Q Consensus 167 ~~~~~~~iAi~vP~-~~~vl~l~Ga~~~~~l~filP~l~~l~~~~~ 211 (249)
..+...+.|+..|+ |=..++..|.. ++.+.-++|+++-.|.||+
T Consensus 330 tflPPl~~al~~P~gFl~AL~yAG~~-~~il~~ilP~lM~~~~Rk~ 374 (415)
T PRK09664 330 TFLPPALLYLIFPNGFIYGIGGAGLC-ATIWAVIIPAVLAIKARKK 374 (415)
T ss_pred hHhhhHHHHHHhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcc
Confidence 67888999999998 88899999996 5688999999999998765
No 14
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=98.49 E-value=2.9e-06 Score=78.12 Aligned_cols=199 Identities=10% Similarity=0.073 Sum_probs=132.0
Q ss_pred HHHHHHHHHHHHHccCchhHHHHHhh----hC---CCCcc--ccchhhhhHHHHHHHHHHHHhhhhhhhhccCCcc----
Q 025701 17 WLVAQALGDIAFAYPYSLILIEIQDT----LK---SPPPA--NQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNT---- 83 (249)
Q Consensus 17 ~~~~~~~gi~~faf~~h~~~~~I~~~----m~---~p~~~--~~~~~~~~~~s~~i~~~~y~~~g~~GY~~fG~~~---- 83 (249)
.....++|+++|||+-|.++++.... .+ ++ + .+|-+|++..+..+..++|++.-...-..-+.+.
T Consensus 209 ~~l~~~iPv~v~SF~f~~iIssl~~y~r~~y~~~~~~--~~a~~k~~rii~~gs~i~lv~y~fwv~S~~gsLs~~~l~~a 286 (443)
T PRK13629 209 VTVWLGISIMVFSFNFSPIVSSFVVSKREEYEKDFGR--DFTERKCSQIISRASMLMVAVVMFFAFSCLFTLSPQNMAEA 286 (443)
T ss_pred HHHHHHHHHHHHHHhccccchHHHHHHHHHhcccccc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 44678999999999999999998887 43 22 2 5888899999999999998866555544444322
Q ss_pred -cc--cccccccC-CCc---------hHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHhh-h-CCCCCCCCCccccCC
Q 025701 84 -PG--NLLTGFGF-YEP---------YWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWICE-K-FPENGFLNNEFFLKP 148 (249)
Q Consensus 84 -~~--~il~~~~~-~~~---------~~~~~i~~i~~~i~~~~s~pl~~~p~~~~~e~~~~~-~-~p~~~~~~~~~~~~~ 148 (249)
++ +++..+.. .+. .+...++.+...+.+..||-=....++|.++.+..+ . .++++ +.
T Consensus 287 ~~qn~s~Ls~La~~~~~~~~~~~~~~~~i~~~~~ifa~~AI~TSFlGv~LGl~E~l~gl~~~~~~~~~~~--------~~ 358 (443)
T PRK13629 287 KAQNIPVLSYLANHFASMTGTKSTFAITLEYAASIIALVAIFKSFFGHYLGTLEGLNGLILKFGYKGDKT--------KV 358 (443)
T ss_pred HHhCCcHHHHHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc--------cc
Confidence 12 22222211 011 235566666677788889888888999999988742 1 11111 00
Q ss_pred CCCCcCcCCcchhhHHHHHHHHHHHHHHhCCChHHHHHHHhhhhhhhhhhhhhhhhhhhhcccchhhHHHHHHHHHHHHH
Q 025701 149 PLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVC 228 (249)
Q Consensus 149 p~~~~~~~~~~r~~~r~~~~~~~~~iAi~vP~~~~vl~l~Ga~~~~~l~filP~l~~l~~~~~~~~~~~~~~~~~~~~~g 228 (249)
+.+..+.....++++.++.+|+.-|++=.++.-+|+-....+.|++|...-.|...-++++ .+..++++.+.|
T Consensus 359 ------~~~~~~~~~~~~~~~~~w~~~~~np~il~~i~~~~gPiia~il~l~P~y~i~kvp~l~~yr-~~~~n~fv~~~G 431 (443)
T PRK13629 359 ------SLGKLNTISMIFIMGSTWVVAYANPNILDLIEAMGAPIIASLLCLLPMYAIRKAPSLAKYR-GRLDNVFVTVIG 431 (443)
T ss_pred ------CHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHhhhHHHHHHHHHHHHHHHHccHHHHHhC-CCchhHHHHHHH
Confidence 1123344455667788899999999999999988888888999999987776654333322 123456666677
Q ss_pred HHHH
Q 025701 229 FIVS 232 (249)
Q Consensus 229 ~~~~ 232 (249)
++..
T Consensus 432 l~~i 435 (443)
T PRK13629 432 LLTI 435 (443)
T ss_pred HHHH
Confidence 6544
No 15
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=98.39 E-value=1.7e-06 Score=79.23 Aligned_cols=181 Identities=10% Similarity=0.079 Sum_probs=122.6
Q ss_pred HHHHHHHHHHHHHHHccCchhHHHHH----hhhCCCCccccchhhhhHHHHHHHHHHHHhhhhhhhhccCCcc-----cc
Q 025701 15 KMWLVAQALGDIAFAYPYSLILIEIQ----DTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNT-----PG 85 (249)
Q Consensus 15 ~~~~~~~~~gi~~faf~~h~~~~~I~----~~m~~p~~~~~~~~~~~~~s~~i~~~~y~~~g~~GY~~fG~~~-----~~ 85 (249)
.+.+...++++.++||.+|.++++.. +|.+||--+.+|-+|++..+..+..++|+..-...-...+.+. ++
T Consensus 184 ~~~~i~~alpv~~~SF~~~~iIssl~~~~~~~~~~~~~~~~k~~k~i~~~~~i~~~~y~~~~~s~~~~l~~~~~~~a~~~ 263 (397)
T TIGR00814 184 FLKTLWLTIPVMVFSFNHSPIISSFAISYREEYGDKEFAERKCLRIMKGASLILVATVMFFVFSCVLSLSPAEAVAAKEQ 263 (397)
T ss_pred hHHHHHHHHHHHHHHHHccccchHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHc
Confidence 45678899999999999999999997 3344220025778899999999999988866555555555333 12
Q ss_pred c--ccccccC-CCchHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHhhh-CCCCCCCCCccccCCCCCCcCcCCcchh
Q 025701 86 N--LLTGFGF-YEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWICEK-FPENGFLNNEFFLKPPLMPAFRWNPLRL 161 (249)
Q Consensus 86 ~--il~~~~~-~~~~~~~~i~~i~~~i~~~~s~pl~~~p~~~~~e~~~~~~-~p~~~~~~~~~~~~~p~~~~~~~~~~r~ 161 (249)
| ++..+.. .+..+...+..+...+.+..||--....++|.++.++.+. .++++ +.+ .+..+.
T Consensus 264 nis~Ls~l~~~~~~~~i~~~~~~f~~~Ai~tSFlG~~lg~~e~l~~l~~~~~~~~~~--------~~~------~~~~~~ 329 (397)
T TIGR00814 264 NISILSYLANHFNAAWISYAGPIVAIVAISKSFFGHYLGAREGLNGIVLNSLKMKGK--------KIN------IRKLNR 329 (397)
T ss_pred CcHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccccc--------ccC------HHHHHH
Confidence 2 1221111 1222455566666777888898888889999999887322 11111 000 022333
Q ss_pred hHHHHHHHHHHHHHHhCCChHHHHHHHhhhhhhhhhhhhhhhhhhhhc
Q 025701 162 CFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYFKQM 209 (249)
Q Consensus 162 ~~r~~~~~~~~~iAi~vP~~~~vl~l~Ga~~~~~l~filP~l~~l~~~ 209 (249)
....++++.++.+|+.-|++=+++.-+|+-....+.|++|...-.|..
T Consensus 330 ~~~~~~~~~~w~~~~~n~~il~~i~~~~gp~~a~i~~~~p~~~~~~v~ 377 (397)
T TIGR00814 330 AIAIFIVLTTWIVAYINPSILSFIEALGGPIIAMILFLMPMYAIYKVP 377 (397)
T ss_pred HHHHHHHHHHHHHHHhCccHHHHHHHhhHHHHHHHHHHHHHHHHHccH
Confidence 445566788899999999999999977888778999999987776653
No 16
>PRK11021 putative transporter; Provisional
Probab=98.07 E-value=0.00026 Score=64.91 Aligned_cols=65 Identities=17% Similarity=0.339 Sum_probs=54.9
Q ss_pred hHHHHHHHHHHHHHHHccCchhHHHHHhhhCCCCccccchhhhhHHHHHHHHHHHHhhhhh--hhhccCC
Q 025701 14 EKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGF--GYAAFGD 81 (249)
Q Consensus 14 ~~~~~~~~~~gi~~faf~~h~~~~~I~~~m~~p~~~~~~~~~~~~~s~~i~~~~y~~~g~~--GY~~fG~ 81 (249)
.++.+++.++....|+|.+-......-+|+||| +|+.+|++..+..++.++|.+.... ++..+++
T Consensus 174 ~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P---~k~iPrAi~~~~~~~~~lYil~~~~~~~~~~~~~ 240 (410)
T PRK11021 174 IEWSGLFAALGVMFWCFVGIEAFAHLASEFKNP---ERDFPRALMIGLLLAGLVYWACTVVVLHFPAYGD 240 (410)
T ss_pred ccHHHHHHHHHHHHHHHhcHHHHHhhHHhccCc---cccccHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 456778899999999999999999999999998 4899999999999999999887654 3333444
No 17
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=97.92 E-value=0.00059 Score=63.32 Aligned_cols=57 Identities=9% Similarity=0.146 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHHHccCchhHHHHHhhhCCCCccccchhhhhHHHHHHHHHHHHhhhhh
Q 025701 15 KMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGF 74 (249)
Q Consensus 15 ~~~~~~~~~gi~~faf~~h~~~~~I~~~m~~p~~~~~~~~~~~~~s~~i~~~~y~~~g~~ 74 (249)
++..+..++....|+|.+-......-+|+||| +|+.+|++..+..++.++|.++.+.
T Consensus 189 ~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P---~r~iPrai~~s~~i~~v~Y~l~~~~ 245 (445)
T PRK10644 189 TFGAIQSTLNVTLWSFIGVESASVAAGVVKNP---KRNVPIATIGGVLIAAVCYVLSSTA 245 (445)
T ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCc---ccchhHHHHHHHHHHHHHHHHHHHH
Confidence 34456678888999999999999999999998 5899999999999999999877665
No 18
>PRK10655 potE putrescine transporter; Provisional
Probab=97.85 E-value=0.00085 Score=62.06 Aligned_cols=57 Identities=11% Similarity=0.129 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHccCchhHHHHHhhhCCCCccccchhhhhHHHHHHHHHHHHhhhhhh
Q 025701 16 MWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFG 75 (249)
Q Consensus 16 ~~~~~~~~gi~~faf~~h~~~~~I~~~m~~p~~~~~~~~~~~~~s~~i~~~~y~~~g~~G 75 (249)
+.++..++....|+|.+-......-+|+||| +|+.+|++..+..++.++|++.....
T Consensus 188 ~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P---~r~iPrAi~~~~~~~~~~Y~l~~~~~ 244 (438)
T PRK10655 188 FSAVGSSIAMTLWAFLGLESACANSDAVENP---ERNVPIAVLGGTLGAAVIYIVSTNVI 244 (438)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhhHHHhhCc---cccccHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778889999999999999999999998 48999999999999999998865443
No 19
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=97.85 E-value=0.0005 Score=64.38 Aligned_cols=49 Identities=10% Similarity=0.070 Sum_probs=42.3
Q ss_pred HHHHHccCchhHHHHHhhhCCCCccccchhhhhHHHHHHHHHHHHhhhhhhh
Q 025701 25 DIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGY 76 (249)
Q Consensus 25 i~~faf~~h~~~~~I~~~m~~p~~~~~~~~~~~~~s~~i~~~~y~~~g~~GY 76 (249)
.+.|+|.+-.+....-+|+||| +++.+|++..+..++.++|.+..+.-.
T Consensus 202 ~~~~af~G~e~~~~~a~E~knP---~r~iPrAi~~~~~~~~~~y~l~~~~~~ 250 (474)
T TIGR03813 202 SIFLFYAGMEMNAVHVKDVDNP---DKNYPIAILIAALGTVLIFVLGTLAIA 250 (474)
T ss_pred HHHHHHhchhHhHHHHHhccCc---ccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578999999999999999998 589999999999999999987554433
No 20
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=97.82 E-value=0.0019 Score=59.77 Aligned_cols=61 Identities=11% Similarity=0.047 Sum_probs=53.8
Q ss_pred hHHHHHHHHHHHHHHHccCchhHHHHHhhhCCCCccccchhhhhHHHHHHHHHHHHhhhhhhhh
Q 025701 14 EKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYA 77 (249)
Q Consensus 14 ~~~~~~~~~~gi~~faf~~h~~~~~I~~~m~~p~~~~~~~~~~~~~s~~i~~~~y~~~g~~GY~ 77 (249)
.+..+++.++....|+|.+-......-+|+||| +|+.+|++..+..++.++|+.....-..
T Consensus 184 ~~~~~~~~a~~~~~faf~G~E~~~~~a~E~knP---~r~iPrAi~~~~~iv~ilYil~~~~~~~ 244 (435)
T PRK10435 184 TDGHAIIKSILLCLWAFVGVESAAVSTGMVKNP---KRTVPLATMLGTGLAGIIYIAATQVISG 244 (435)
T ss_pred chHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCc---cccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456788899999999999999999999999998 4799999999999999999887765443
No 21
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=97.67 E-value=0.0013 Score=61.21 Aligned_cols=57 Identities=19% Similarity=0.178 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHccCchhHHHHHhhhCCCCccccchhhhhHHHHHHHHHHHHhhhhh
Q 025701 15 KMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGF 74 (249)
Q Consensus 15 ~~~~~~~~~gi~~faf~~h~~~~~I~~~m~~p~~~~~~~~~~~~~s~~i~~~~y~~~g~~ 74 (249)
.+.+++.++....|+|.+-.+.....+|+||| +|+.+|++..+.....++|+...+.
T Consensus 179 g~~~~~~a~~~~~faf~G~e~~~~~a~E~knP---~r~iPrai~~~~~~i~i~Yil~~~~ 235 (446)
T PRK10197 179 GFGAVLSAMLITMFSFMGAEIVTIAAAESDTP---EKHIVRATNSVIWRISIFYLCSIFV 235 (446)
T ss_pred cHHHHHHHHHHHHHHHhCHHHHHHHHHHhcCh---hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34578899999999999999999999999998 4789999999999999999875544
No 22
>PRK10746 putative transport protein YifK; Provisional
Probab=97.67 E-value=0.0016 Score=60.83 Aligned_cols=57 Identities=18% Similarity=0.060 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHccCchhHHHHHhhhCCCCccccchhhhhHHHHHHHHHHHHhhhhh
Q 025701 15 KMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGF 74 (249)
Q Consensus 15 ~~~~~~~~~gi~~faf~~h~~~~~I~~~m~~p~~~~~~~~~~~~~s~~i~~~~y~~~g~~ 74 (249)
++.++..++....|+|.+--.....-+|+||| +++.+|++..+.....++|+.....
T Consensus 198 g~~g~~~~~~~~~faf~G~e~v~~~a~E~knP---~k~iP~Ai~~~~~~i~~~yv~~~~~ 254 (461)
T PRK10746 198 GWKGFLTALCIVVASYQGVELIGITAGEAKNP---QVTLRSAVGKVLWRILIFYVGAIFV 254 (461)
T ss_pred cHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCh---hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667789999999999999999999999998 5999999998888888888765433
No 23
>PRK15049 L-asparagine permease; Provisional
Probab=97.67 E-value=0.0014 Score=61.82 Aligned_cols=59 Identities=15% Similarity=0.139 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHccCchhHHHHHhhhCCCCccccchhhhhHHHHHHHHHHHHhhhhhhh
Q 025701 15 KMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGY 76 (249)
Q Consensus 15 ~~~~~~~~~gi~~faf~~h~~~~~I~~~m~~p~~~~~~~~~~~~~s~~i~~~~y~~~g~~GY 76 (249)
.+...+.++....|+|.+--.....-+|+||| +++.+|++..++....++|+.....-.
T Consensus 218 g~~~~~~~~~~~~faf~G~e~i~~~aeE~knP---~r~iPrAi~~~~~~i~~~yi~~~~~~~ 276 (499)
T PRK15049 218 GLLPALVLIQGVVFAFASIEMVGTAAGECKDP---QTMVPKAINSVIWRIGLFYVGSVVLLV 276 (499)
T ss_pred cHHHHHHHHHHHHHHHhhHHHHHHHHHHhcCh---hhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556677778999999999999999999998 478999999999888888876655433
No 24
>PRK10249 phenylalanine transporter; Provisional
Probab=97.63 E-value=0.00091 Score=62.41 Aligned_cols=57 Identities=14% Similarity=0.129 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHccCchhHHHHHhhhCCCCccccchhhhhHHHHHHHHHHHHhhhhh
Q 025701 15 KMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGF 74 (249)
Q Consensus 15 ~~~~~~~~~gi~~faf~~h~~~~~I~~~m~~p~~~~~~~~~~~~~s~~i~~~~y~~~g~~ 74 (249)
.+.+++.++....|+|.+--.....-+|+||| +++.+|++..+.....++|+.....
T Consensus 207 g~~~~~~~~~~~~~af~G~e~~~~~a~E~~~P---~k~iPrai~~~~~~~~~~y~~~~~~ 263 (458)
T PRK10249 207 GWNGLILSLAVIMFSFGGLELIGITAAEARDP---EKSIPKAVNQVVYRILLFYIGSLVV 263 (458)
T ss_pred cHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCH---hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567889999999999999999999999998 5889999999999999999765443
No 25
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=97.62 E-value=0.0032 Score=58.89 Aligned_cols=61 Identities=11% Similarity=0.119 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHccCchhHHHHHhhhCCCCccccchhhhhHHHHHHHHHHHHhhhhhhhhccC
Q 025701 16 MWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFG 80 (249)
Q Consensus 16 ~~~~~~~~gi~~faf~~h~~~~~I~~~m~~p~~~~~~~~~~~~~s~~i~~~~y~~~g~~GY~~fG 80 (249)
+.++.+++....|+|.+-.....+.+|.||+ ++.+|++..+..++.++|..+.+..+...+
T Consensus 194 ~~~~~~~~~~~~~~f~G~e~~~~~a~e~k~~----k~ip~ai~~~~~~v~~lY~l~~~~~~g~~~ 254 (468)
T TIGR03810 194 MTQVKNMMLVTVWVFIGIEGASMLSARAEKR----SDVGKATVIGLIGVLAIYVLVSVLSYGIMT 254 (468)
T ss_pred HHHHHHHHHHHHHHHHhHhHHhhhHhhccCc----ccchHHHHHHHHHHHHHHHHHHHHHHhCcC
Confidence 3445578889999999999999899999875 899999999999999999988776554443
No 26
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=97.57 E-value=0.0041 Score=58.16 Aligned_cols=56 Identities=13% Similarity=0.212 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHccCchhHHHHHhhhCCCCccccchhhhhHHHHHHHHHHHHhhhh
Q 025701 15 KMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGG 73 (249)
Q Consensus 15 ~~~~~~~~~gi~~faf~~h~~~~~I~~~m~~p~~~~~~~~~~~~~s~~i~~~~y~~~g~ 73 (249)
++.++..++....|+|.+--.....-+|+||| +++.+|++..+..+...+|+....
T Consensus 195 ~~~~~~~~~~~~~~af~G~e~~~~~a~E~knP---~r~iPrai~~~~~~~~~~Y~l~~~ 250 (478)
T TIGR00913 195 RFKGVCSVFVTAAFSFGGTELVALTAGEAANP---RKSIPRAAKRTFWRILVFYILTLF 250 (478)
T ss_pred hHHHHHHHHHHHHhhhccHHHHHHHHHhhcCh---hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 36678889999999999999999999999998 589999999999999999998654
No 27
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=97.57 E-value=0.0022 Score=59.46 Aligned_cols=56 Identities=14% Similarity=0.243 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHccCchhHHHHHhhhCCCCccccchhhhhHHHHHHHHHHHHhhhhh
Q 025701 16 MWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGF 74 (249)
Q Consensus 16 ~~~~~~~~gi~~faf~~h~~~~~I~~~m~~p~~~~~~~~~~~~~s~~i~~~~y~~~g~~ 74 (249)
+.+++.++....|+|.+-.......+|+||| +|+.+|++..+..++.++|++....
T Consensus 194 ~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P---~r~iP~Ai~~~~~i~~~~Y~l~~~~ 249 (445)
T PRK11357 194 FMALLAGISATSWSYTGMASICYMTGEIKNP---GKTMPRALIGSCLLVLVLYTLLALV 249 (445)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHhhHHHhcCc---cccchHHHHHHHHHHHHHHHHHHHH
Confidence 5667788999999999999999999999998 4899999999999999999876654
No 28
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=97.57 E-value=0.0022 Score=59.98 Aligned_cols=59 Identities=15% Similarity=0.122 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHccCchhHHHHHhhhCCCCccccchhhhhHHHHHHHHHHHHhhhhhhh
Q 025701 15 KMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGY 76 (249)
Q Consensus 15 ~~~~~~~~~gi~~faf~~h~~~~~I~~~m~~p~~~~~~~~~~~~~s~~i~~~~y~~~g~~GY 76 (249)
.+.+++.++....|+|.+-......-+|+||| +++.+|++..+.....++|.+....-+
T Consensus 209 g~~~~~~~~~~~~~af~G~e~~~~~a~E~knP---~r~iPrai~~~~~~~~~~y~l~~~~~~ 267 (469)
T PRK11049 209 GLSGFFAGFQIAVFAFVGIELVGTTAAETKDP---EKSLPRAINSIPIRIIMFYVFALIVIM 267 (469)
T ss_pred cHHHHHHHHHHHHHHHhcHHHHHHHHHHhcCH---hhHHHHHHHHHHHHHHHHHHHHHHHHe
Confidence 34568899999999999999999999999998 478999998777777888876655443
No 29
>PRK10580 proY putative proline-specific permease; Provisional
Probab=97.53 E-value=0.0026 Score=59.25 Aligned_cols=56 Identities=18% Similarity=0.142 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHccCchhHHHHHhhhCCCCccccchhhhhHHHHHHHHHHHHhhhhh
Q 025701 16 MWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGF 74 (249)
Q Consensus 16 ~~~~~~~~gi~~faf~~h~~~~~I~~~m~~p~~~~~~~~~~~~~s~~i~~~~y~~~g~~ 74 (249)
+.+.+.++....|+|.+--......+|+||| +++.+|++..+.....++|......
T Consensus 198 ~~~~~~~~~~~~fsf~G~e~~~~~a~E~knP---~k~iPrAi~~~~~~~~~~y~~~~~~ 253 (457)
T PRK10580 198 WLGMVMSLQMVMFAYGGIEIIGITAGEAKDP---EKSIPRAINSVPMRILVFYVGTLFV 253 (457)
T ss_pred hHHHHHHHHHHHHHHhCHHHHHHHHHHhcCh---hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467789999999999999999999999998 4789999998887777888766443
No 30
>PRK11387 S-methylmethionine transporter; Provisional
Probab=97.52 E-value=0.0029 Score=59.26 Aligned_cols=56 Identities=13% Similarity=0.129 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHccCchhHHHHHhhhCCCCccccchhhhhHHHHHHHHHHHHhhhhh
Q 025701 16 MWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGF 74 (249)
Q Consensus 16 ~~~~~~~~gi~~faf~~h~~~~~I~~~m~~p~~~~~~~~~~~~~s~~i~~~~y~~~g~~ 74 (249)
..+++.++....|+|.+-......-+|+||| +++.+|++..+..+...+|+.....
T Consensus 205 ~~~~~~~~~~~~faf~G~e~~~~~a~E~knP---~r~iPrAi~~~~~~~~~~y~~~~~~ 260 (471)
T PRK11387 205 GLPILMTMVAVNFAFSGTELIGIAAGETENP---AKVIPVAIRTTIARLVIFFVGTVLV 260 (471)
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHHhcCh---hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888999999999999999999998 5889999999999999999877654
No 31
>PRK10836 lysine transporter; Provisional
Probab=97.43 E-value=0.0051 Score=57.89 Aligned_cols=57 Identities=11% Similarity=0.126 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHccCchhHHHHHhhhCCCCccccchhhhhHHHHHHHHHHHHhhhhhh
Q 025701 16 MWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFG 75 (249)
Q Consensus 16 ~~~~~~~~gi~~faf~~h~~~~~I~~~m~~p~~~~~~~~~~~~~s~~i~~~~y~~~g~~G 75 (249)
+...+.+.....|+|.+-......-+|+||| +++.+|++..++....++|+.....-
T Consensus 204 ~~~~~~~~~~~~faf~G~e~~~~~a~E~knP---~r~iPrAi~~~~~~v~~~Yvl~~~~~ 260 (489)
T PRK10836 204 FAAMIGVAMIVGFSFQGTELIGIAAGESEDP---AKNIPRAVRQVFWRILLFYVFAILII 260 (489)
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHhcCH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666789999999999999999998 58999999999999999999775443
No 32
>TIGR00909 2A0306 amino acid transporter.
Probab=97.42 E-value=0.0052 Score=56.58 Aligned_cols=59 Identities=20% Similarity=0.264 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHHccCchhHHHHHhhhCCCCccccchhhhhHHHHHHHHHHHHhhhhhhh
Q 025701 15 KMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGY 76 (249)
Q Consensus 15 ~~~~~~~~~gi~~faf~~h~~~~~I~~~m~~p~~~~~~~~~~~~~s~~i~~~~y~~~g~~GY 76 (249)
+..+++.++....|+|.+........+|+||| +|+.+|++..+..+..++|+.....-.
T Consensus 193 ~~~~~~~~~~~~~~af~G~e~~~~~~~E~~~p---~r~ip~ai~~~~~~~~v~Yil~~~~~~ 251 (429)
T TIGR00909 193 GFGGVGAATALVFFAFIGFEAISTAAEEVKNP---ERDIPKAIILSLIVVTLLYVLVAAVIL 251 (429)
T ss_pred cHHHHHHHHHHHHHHHhhHHHHHhhHHhccCc---cccccHHHHHHHHHHHHHHHHHHHHHh
Confidence 34567788999999999999999999999998 478999999999999999998765443
No 33
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=97.36 E-value=0.008 Score=55.14 Aligned_cols=108 Identities=16% Similarity=0.167 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHccCchhHHHHHhhhCCCCccccchhhhhHHHHHHHHHHHHhhhhhhhhccCCccc---cccc---cccc
Q 025701 19 VAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTP---GNLL---TGFG 92 (249)
Q Consensus 19 ~~~~~gi~~faf~~h~~~~~I~~~m~~p~~~~~~~~~~~~~s~~i~~~~y~~~g~~GY~~fG~~~~---~~il---~~~~ 92 (249)
.+.++....|+|.+-.......+|+|| |+.+|++..+..++.++|......-....+++.. ++.. ..+.
T Consensus 190 ~~~~~~~~~~~~~G~e~~~~~~~E~k~-----k~ip~ai~~~~~~~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (426)
T PF13520_consen 190 FLAGFSVAFFAFSGFEAIASLAEENKN-----KTIPRAIIISIIIVAIIYILFSIALLGALPDDELANSSNSPSPFAVLA 264 (426)
T ss_dssp HHHHHHHHGGGGTTTTHHHHGGGGSSS-----HHHHHHHHHHHHHHHHHHHHHHHHHHTTSTHCHHHTTTCHHCHHHHHH
T ss_pred hhhHHHHHHhhcccccccccccccccc-----hhheeecccchhHHHHHHhhhhheeeecccchhhhcccccccccchhh
Confidence 578899999999999999999999875 7999999999999999999886655555444221 1211 1110
Q ss_pred C-CCchHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHh
Q 025701 93 F-YEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWIC 131 (249)
Q Consensus 93 ~-~~~~~~~~i~~i~~~i~~~~s~pl~~~p~~~~~e~~~~ 131 (249)
+ ....+...+..+...+..+.+..-.....-+.++.+-+
T Consensus 265 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~l~~~a~ 304 (426)
T PF13520_consen 265 SAVGGSWLAIIVSIAAILSLFGSINAFIFGASRLLYAMAR 304 (426)
T ss_dssp HHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccchhhcchhhccccccc
Confidence 0 01123444555555566665555554444455554443
No 34
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=97.35 E-value=0.01 Score=55.55 Aligned_cols=58 Identities=9% Similarity=0.063 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHccCchhHHHHHhhhCCCCccccchhhhhHHHHHHHHHHHHhhhhhhh
Q 025701 15 KMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGY 76 (249)
Q Consensus 15 ~~~~~~~~~gi~~faf~~h~~~~~I~~~m~~p~~~~~~~~~~~~~s~~i~~~~y~~~g~~GY 76 (249)
.+..+..++....|+|.+-.......+|+||+ ++.+|++..+..++.++|++......
T Consensus 197 ~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~~----r~iPrai~~~~~i~~~~Yil~~~~~~ 254 (473)
T TIGR00905 197 VFSQVKNTMLVTLWVFIGIEGAVVSSGRAKNK----SDVGKATVLGTLGALVIYILITLLSL 254 (473)
T ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcc----ccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567788999999999999999999999984 99999999999999999987766533
No 35
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=97.35 E-value=0.0068 Score=56.83 Aligned_cols=53 Identities=8% Similarity=0.009 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHccCchhHHHHHhhhCCCCccccchhhhhHHHHHHHHHHHHhhh
Q 025701 17 WLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCG 72 (249)
Q Consensus 17 ~~~~~~~gi~~faf~~h~~~~~I~~~m~~p~~~~~~~~~~~~~s~~i~~~~y~~~g 72 (249)
+..+.++-...|+|.+-......-+|+||| +|+.+|++..+..+..+++.+..
T Consensus 217 ~~~~~~~~~~~fsf~G~e~~~~~a~E~knP---~r~iP~Ai~~s~~i~~~~~~~~~ 269 (482)
T TIGR00907 217 FAFLLGLLNPAWSMTGYDGTAHMAEEIENP---EVVGPRAIIGAVAIGIVTGFCFN 269 (482)
T ss_pred hhhhhhhhhhHHHhcCcchhhHHHHhcCCh---hhhcCHHHHHHHHHHHHHHHHHH
Confidence 345566666789999999999999999998 58999999999887766544333
No 36
>PRK10238 aromatic amino acid transporter; Provisional
Probab=97.31 E-value=0.0075 Score=56.27 Aligned_cols=53 Identities=19% Similarity=0.214 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHccCchhHHHHHhhhCCCCccccchhhhhHHHHHHHHHHHHhh
Q 025701 16 MWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFC 71 (249)
Q Consensus 16 ~~~~~~~~gi~~faf~~h~~~~~I~~~m~~p~~~~~~~~~~~~~s~~i~~~~y~~~ 71 (249)
+.++..+++...|+|.+--......+|+||| +|+.+|++..+.....++|+..
T Consensus 199 ~~~~~~~~~~~~~af~G~e~~~~~aeE~knP---~r~iPrAi~~~~~~i~~~y~~~ 251 (456)
T PRK10238 199 FTGLVMMMAIIMFSFGGLELVGITAAEADNP---EQSIPKATNQVIYRILIFYIGS 251 (456)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHhhcCh---hhHHHHHHHHHHHHHHHHHHHH
Confidence 4466678888999999999999999999998 4889999988887777777654
No 37
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=97.31 E-value=0.0071 Score=55.99 Aligned_cols=56 Identities=11% Similarity=-0.068 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHccCchhHHHHHhhhCCCCccccchhhhhHHHHHHHHHHHHhhhh
Q 025701 15 KMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGG 73 (249)
Q Consensus 15 ~~~~~~~~~gi~~faf~~h~~~~~I~~~m~~p~~~~~~~~~~~~~s~~i~~~~y~~~g~ 73 (249)
.+.+++.++....|+|.+.......-+|+||| +++.+|++..+..++..+|.....
T Consensus 189 ~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P---~r~iprai~~s~~~~~~~~~~~~~ 244 (442)
T TIGR00908 189 AYVGVFAAIPFAIWFFLAVEGVAMAAEETKNP---KRDIPRGLIGAILTLLALAAGILV 244 (442)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc---ccccCHHHHHHHHHHHHHHHHHHH
Confidence 34577888888999999999999999999998 488999999999988888876644
No 38
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=97.29 E-value=0.0068 Score=56.33 Aligned_cols=59 Identities=17% Similarity=0.107 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHHHccCchhHHHHHhhhCCCCccccchhhhhHHHHHHHHHHHHhhhhhhh
Q 025701 15 KMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGY 76 (249)
Q Consensus 15 ~~~~~~~~~gi~~faf~~h~~~~~I~~~m~~p~~~~~~~~~~~~~s~~i~~~~y~~~g~~GY 76 (249)
.+.+++.++....|+|.+-......-+|+||| +++.+|++..+......+|+.......
T Consensus 199 g~~~~~~a~~~~~~af~G~e~~~~~a~E~k~P---~r~iPrAi~~~~~~~~~~y~l~~~~~~ 257 (452)
T TIGR01773 199 GIGAVLLAILVTMFSFMGTEIVTIAAAESSNP---IKSITRATNSVIWRIIVFYLGSIFIVV 257 (452)
T ss_pred cHHHHHHHHHHHHHHhccHHHHhHHHHhhcCh---hhHHHHHHHHHHHHHHHHHHHHHHHHe
Confidence 34568889999999999999999999999998 479999998888888888887644333
No 39
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=97.21 E-value=0.0067 Score=58.14 Aligned_cols=58 Identities=12% Similarity=0.116 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHccCchhHHHHHhhhCCCCccccchhhhhHHHHHHHHHHHHhhhhhh
Q 025701 15 KMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFG 75 (249)
Q Consensus 15 ~~~~~~~~~gi~~faf~~h~~~~~I~~~m~~p~~~~~~~~~~~~~s~~i~~~~y~~~g~~G 75 (249)
.+.+++.+.....|+|.+--.....-+|+||| +++.+|++..+..++.++|.++...-
T Consensus 229 g~~g~l~g~~~~~faf~Gfd~v~~~aeE~knP---~r~iP~aii~sl~i~~vlY~lv~~~l 286 (557)
T TIGR00906 229 GFTGVLSGAATCFFAFIGFDAIATTGEEVKNP---QRAIPIGIVTSLLVCFVAYFLMSAAL 286 (557)
T ss_pred chHHHHHHHHHHHHHHhhHHHHHHhHHhccCc---cccccHHHHHHHHHHHHHHHHHHHHH
Confidence 45678889999999999999999999999998 48899999999999999998776543
No 40
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=97.15 E-value=0.007 Score=57.07 Aligned_cols=58 Identities=19% Similarity=0.104 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHHccCchhHHHHHhhhCCCCccccchhhhhHHHHHHHHHHHHhhhhhh
Q 025701 15 KMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFG 75 (249)
Q Consensus 15 ~~~~~~~~~gi~~faf~~h~~~~~I~~~m~~p~~~~~~~~~~~~~s~~i~~~~y~~~g~~G 75 (249)
+..++..++....|+|.+-.......+|+||| +++.+|++..+..++.++|++....-
T Consensus 233 ~~~~~~~a~~~~~~af~G~e~~~~~a~E~knP---~r~iPrAi~~s~~~v~~~Y~l~~~a~ 290 (501)
T TIGR00911 233 SAGGIVLAFYSGIWAYGGWNYLNFVTEEVKNP---YRTLPIAIIISMPIVTFIYVLTNIAY 290 (501)
T ss_pred cHHHHHHHHHHHHHHHHhHHHHhhhHHHhcCc---hhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677789999999999999999999999998 48899999999999999999885443
No 41
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=97.02 E-value=0.026 Score=53.25 Aligned_cols=54 Identities=19% Similarity=0.106 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHccCchhHHHHHhhhCCCCccccchhhhhHHHHHHHHHHHHhhhh
Q 025701 17 WLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGG 73 (249)
Q Consensus 17 ~~~~~~~gi~~faf~~h~~~~~I~~~m~~p~~~~~~~~~~~~~s~~i~~~~y~~~g~ 73 (249)
++.+.++....|+|.+--......+|+||| +++.+|++..+...+..+|.+..+
T Consensus 211 ~~~~~~~~~~~~~f~G~e~~~~~a~E~~~p---~~~~p~ai~~~~~~~~~~y~l~~~ 264 (496)
T PRK15238 211 IAVLSFVVFAIFAYGGIEAVGGLVDKTENP---EKNFPKGIIIAAIVISIGYSLAIF 264 (496)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHhccCC---CccccHHHHHHHHHHHHHHHHHHH
Confidence 456677888899999999999999999998 589999999999999999987644
No 42
>TIGR00930 2a30 K-Cl cotransporter.
Probab=96.94 E-value=0.04 Score=56.09 Aligned_cols=53 Identities=25% Similarity=0.262 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHccCchhHHHHHhhhCCCCccccchhhhhHHHHHHHHHHHHhhhhh
Q 025701 19 VAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGF 74 (249)
Q Consensus 19 ~~~~~gi~~faf~~h~~~~~I~~~m~~p~~~~~~~~~~~~~s~~i~~~~y~~~g~~ 74 (249)
++..++++.+||.+-.....+-.|+||| +++.+|++..|..+++++|+++.+.
T Consensus 282 f~~~~ai~F~A~tGi~agan~sgElKnP---~r~IPratl~ai~i~~vlYllv~~~ 334 (953)
T TIGR00930 282 FFSLFGIFFPSVTGILAGANISGDLKDP---QKAIPKGTLLAILTTTVVYLGSVVL 334 (953)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCh---hhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 6678888888999999999999999999 4899999999999999999988753
No 43
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=96.90 E-value=0.031 Score=51.66 Aligned_cols=63 Identities=16% Similarity=0.210 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHccCchhHHHHHhhhCCCCccccchhhhhHHHHHHHHHHHHhhhhhhhhccCC
Q 025701 16 MWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGD 81 (249)
Q Consensus 16 ~~~~~~~~gi~~faf~~h~~~~~I~~~m~~p~~~~~~~~~~~~~s~~i~~~~y~~~g~~GY~~fG~ 81 (249)
...+..++....++|.|-......-+|+||| +++.+|++..++.++..+|+.....-....++
T Consensus 200 ~~~~~~~~~~~~~~f~G~e~~~~~a~E~knp---~r~ip~aii~~~~~~~~~y~~~~~~~~~~~~~ 262 (466)
T COG0531 200 FGGILAAILLAFFAFTGFEAIATLAEEVKNP---KRTIPRAIILSLLIVLILYILGALVIVGVLPA 262 (466)
T ss_pred HHHHHHHHHHHHHHhhcHHHHHHHHHHhcCc---cccccHHHHHHHHHHHHHHHHHHHHHHhCccH
Confidence 3467889999999999999999999999998 47799999999999999999888877776665
No 44
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=96.69 E-value=0.019 Score=53.54 Aligned_cols=182 Identities=13% Similarity=0.129 Sum_probs=102.7
Q ss_pred hHHHHHHHHHHHHHHHccCchhHHHHHhhhCCCCccccchhhhhHHHHHHHHHHHHhhhhhhhhcc--CCccccccc-cc
Q 025701 14 EKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAF--GDNTPGNLL-TG 90 (249)
Q Consensus 14 ~~~~~~~~~~gi~~faf~~h~~~~~I~~~m~~p~~~~~~~~~~~~~s~~i~~~~y~~~g~~GY~~f--G~~~~~~il-~~ 90 (249)
.+..++-.++=.-.|||.+=.++=.+-+|+||| +|+++|++..|+.+++++|+.+=+..+-.- .+-.+++.. ..
T Consensus 201 ~~~g~i~lafysglfa~~GWd~lN~vteEiknP---~ktLP~Ai~isi~lvt~iYil~NvAy~~vls~~e~l~S~aVav~ 277 (479)
T KOG1287|consen 201 TDVGNIALAFYSGLFAFSGWDYLNYVTEEIKNP---RRTLPRAILISIPLVTVIYVLVNVAYFTVLSPDEILSSDAVAVT 277 (479)
T ss_pred CchHHHHHHHHHhhhcccCchhhccchHhhcCc---cccchHHHHHhhHHHHHHHHHhHhheeEecCHHHhcccchHHHH
Confidence 444456677778899999999999999999999 699999999999999999998765544322 221111111 11
Q ss_pred ccCC-CchHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHhhh-CCCC-CCCCCccccCCCCCCcCcCCcchhhHHHHH
Q 025701 91 FGFY-EPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWICEK-FPEN-GFLNNEFFLKPPLMPAFRWNPLRLCFRTVY 167 (249)
Q Consensus 91 ~~~~-~~~~~~~i~~i~~~i~~~~s~pl~~~p~~~~~e~~~~~~-~p~~-~~~~~~~~~~~p~~~~~~~~~~r~~~r~~~ 167 (249)
+.+. -+.+. -+.-+++.++.+.+.--.++..-..+...-++. .|+. ...++ ++..+ + ...++
T Consensus 278 Fa~~~~G~~~-~~ip~~ValS~~G~~n~~ifs~SR~~~~~areG~LP~~~s~i~~-----------~~~TP-~--~allf 342 (479)
T KOG1287|consen 278 FADRILGVFA-WAIPFSVALSLIGSLNSVIFSSSRLFYAGAREGHLPAFFSMISV-----------RRFTP-R--PALLF 342 (479)
T ss_pred HHHHhccchH-HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHccCccHHHHhhcC-----------CCCCC-h--HHHHH
Confidence 1110 01121 223333444444433222222111111111110 1110 00000 00001 1 11223
Q ss_pred HHHHHHHHHhCCChHHHHHHHhhhhhhhhhhhhhhhhhhhhcccch
Q 025701 168 VVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEA 213 (249)
Q Consensus 168 ~~~~~~iAi~vP~~~~vl~l~Ga~~~~~l~filP~l~~l~~~~~~~ 213 (249)
-....++...+.|+..+++.++=.......+.+=+++|+|.|+++.
T Consensus 343 ~~~~~i~~~~~~d~~~LIny~sf~~~l~~~l~~~gll~lR~k~p~~ 388 (479)
T KOG1287|consen 343 SGLLSIVLSLIGDFDQLINYVSFAYWLFRGLSMAGLLWLRWKHPPL 388 (479)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Confidence 3444445566678999999998888888888888999999987763
No 45
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=96.62 E-value=0.3 Score=45.74 Aligned_cols=58 Identities=7% Similarity=-0.181 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHccCchhHHHHHhhhCCCCccccchhhhhHHHHHHHHHHHHhhhhhhh
Q 025701 16 MWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGY 76 (249)
Q Consensus 16 ~~~~~~~~gi~~faf~~h~~~~~I~~~m~~p~~~~~~~~~~~~~s~~i~~~~y~~~g~~GY 76 (249)
...+..+.-...|+|.+--....+-+|+||| +++.+|++..+..+...+|..+-+.-.
T Consensus 212 ~~~~~~~~~~~~~~f~G~e~~~~~aeE~knP---~r~iPrai~~s~~i~~~~~~~~~~~~~ 269 (475)
T TIGR03428 212 YGAFLVSGLMAAYVMVGFGSAGELSEETKNP---RRVAPRTILTALSVSALGGGLMILGAL 269 (475)
T ss_pred HHHHHHHHHHHHHHhcCcchHHHHHHHhcCc---chhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445567777889999999999999999998 589999999999888776655444333
No 46
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=96.62 E-value=0.032 Score=52.90 Aligned_cols=50 Identities=14% Similarity=0.060 Sum_probs=42.0
Q ss_pred HHHHHHHHHHccCchhHHHHHhhhCCCCccccchhhhhHHHHHHHHHHHHhhh
Q 025701 20 AQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCG 72 (249)
Q Consensus 20 ~~~~gi~~faf~~h~~~~~I~~~m~~p~~~~~~~~~~~~~s~~i~~~~y~~~g 72 (249)
...+..+.|+|.+--.....-+|+||| +|+++|++..+..++.++|.+..
T Consensus 197 ~~~~~~~~faf~G~E~~a~~a~E~knP---~r~~PrAi~~~~i~~~~l~~l~~ 246 (507)
T TIGR00910 197 LVVFVAFIGAYMGVEASASHINELENP---GRDYPLAMILLMIAAICLDAIGG 246 (507)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHccCC---cccccHHHHHHHHHHHHHHHHHH
Confidence 344445689999999999999999998 48999999999988888887643
No 47
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=95.23 E-value=0.017 Score=54.02 Aligned_cols=65 Identities=18% Similarity=0.144 Sum_probs=56.3
Q ss_pred hHHHHHHHHHHHHHHHccCchhHHHHHhhhCCCCccccchhhhhHHHHHHHHHHHHhhhhhhhhccCC
Q 025701 14 EKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGD 81 (249)
Q Consensus 14 ~~~~~~~~~~gi~~faf~~h~~~~~I~~~m~~p~~~~~~~~~~~~~s~~i~~~~y~~~g~~GY~~fG~ 81 (249)
.++.+++.++....++|.+-......-+|.||| +|+.+|++..+.....++|+.....-=...+.
T Consensus 197 ~~~~~~~~~~~~~~~af~G~e~~a~~a~E~k~P---~k~IPra~~~~~~~~~v~y~~~~~~~~~~~~~ 261 (478)
T PF00324_consen 197 GGFSGFFAALVFAFFAFVGFESIAILAEEAKNP---RKTIPRATLLSVLRIGVFYVLTSYALTLAVPY 261 (478)
T ss_pred cchhHHHHhhhhhhcccccccccccccccCCCc---hhhhhhHhhhhhhhhhhhhhhhhhhcccccCc
Confidence 457888999999999999999999999999998 58999999999999999998776655445543
No 48
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=94.81 E-value=0.42 Score=44.35 Aligned_cols=189 Identities=12% Similarity=0.118 Sum_probs=102.5
Q ss_pred cCccccCCh-----hhHHHHHHHHHHHHHHHccCchhHHHHHhhhCCCCccccchhhhhH-----HHHHHHHHHHHhhhh
Q 025701 4 FSGVSTTTS-----IEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKAST-----MSIITTTIFYLFCGG 73 (249)
Q Consensus 4 ~~~~~~~~~-----~~~~~~~~~~~gi~~faf~~h~~~~~I~~~m~~p~~~~~~~~~~~~-----~s~~i~~~~y~~~g~ 73 (249)
..|+|+.++ +..+.+++.++-+.+|||++.-.+=--..|-||| ++..+|+.. ....-...+..++.+
T Consensus 185 ~~g~snl~~hGGffP~G~~g~~~~~~~v~Faf~GiElvGitA~Et~dP---~k~ipkAin~V~~RI~iFYvgsl~vi~~l 261 (462)
T COG1113 185 AAGFSNLWDHGGFFPNGFLGFLSALQIVMFAFGGIELVGITAAEAKDP---EKAIPKAINSVIWRILIFYVGSLFVILSL 261 (462)
T ss_pred CccccccccCCCcCCCchHHHHHHHHHHHHHHhhHHHHHHHHHhhcCh---hhHHHHHHhhhhHHHHHHHHHHHHHHhee
Confidence 345554444 3456778899999999999999999999999999 466777654 344455555667888
Q ss_pred hhhhccCCcccc--cccccccCCCchHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHhhh-CCCCCCCCCccccCCCC
Q 025701 74 FGYAAFGDNTPG--NLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWICEK-FPENGFLNNEFFLKPPL 150 (249)
Q Consensus 74 ~GY~~fG~~~~~--~il~~~~~~~~~~~~~i~~i~~~i~~~~s~pl~~~p~~~~~e~~~~~~-~p~~~~~~~~~~~~~p~ 150 (249)
..+-.++++.++ .+.+.+. .| +...+.|..+....+.+.==-.+..-.++..+-... -|+ .+ .|-...++|
T Consensus 262 ~PW~~~~~~~SPFV~~f~~iG--i~-~Aa~i~N~VVLtAa~S~~NSglystsRmL~~la~~g~APk-~~-~klsk~gVP- 335 (462)
T COG1113 262 YPWNQIGEDGSPFVTVFSLIG--IP-FAAGIMNFVVLTAALSALNSGLYSTSRMLYSLAKQGDAPK-AF-AKLSKRGVP- 335 (462)
T ss_pred ccccccCCCCCcHHHHHHHcC--Cc-ccccceeEEEeechhhcccccccccchHHHHHhhcCcccH-hH-hhccccCCC-
Confidence 888777776655 3334443 12 223333333222222221112223333333332111 111 00 000001222
Q ss_pred CCcCcCCcchhhHHHHHHHHHHHHHHhCCChHHHHHHHhhhhhhh--hhhhhhhhhhhhhcc
Q 025701 151 MPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWP--LTIYFPVEMYFKQMN 210 (249)
Q Consensus 151 ~~~~~~~~~r~~~r~~~~~~~~~iAi~vP~~~~vl~l~Ga~~~~~--l~filP~l~~l~~~~ 210 (249)
+.-+.+.....++..++-...| +.++.++=+..+.. ....+=.+.|+|.||
T Consensus 336 -------~~ai~~s~~~~~~~V~Lny~~P--~~vF~~v~s~s~~~~l~vW~~I~~s~l~~rk 388 (462)
T COG1113 336 -------VNAILLSAVVLLLGVVLNYILP--EKVFELVTSSSGLGLLFVWLMILLSQLKLRK 388 (462)
T ss_pred -------HHHHHHHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334455566677777888888 55555554444333 333344566777665
No 49
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=93.76 E-value=0.89 Score=40.75 Aligned_cols=64 Identities=19% Similarity=0.288 Sum_probs=50.3
Q ss_pred HHHHHHHH-HHHHHHccCchhHHHHHhhhCCCCccccchhhhhHHHHHHHHHHHHhhhhhhhhccCCcc
Q 025701 16 MWLVAQAL-GDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNT 83 (249)
Q Consensus 16 ~~~~~~~~-gi~~faf~~h~~~~~I~~~m~~p~~~~~~~~~~~~~s~~i~~~~y~~~g~~GY~~fG~~~ 83 (249)
..+.+.+. ....++|.+.....-...++||| ++.+|+...+..++..+|...-......+|.+.
T Consensus 177 ~~~~~~~~~~~~~~~f~g~~i~~~~~~~~~~~----~~~~k~~~~~~~~~~~ly~~~~~~~i~~lg~~~ 241 (359)
T TIGR00912 177 LSPILKGAYPVVTFAFGEIEIFFLLFPLLSKK----KKIKKSIIKAIIIGVLLYILTTFVSISVFGGNV 241 (359)
T ss_pred cHHHHhhhhHHhhhhhHHHHHHHHHHHHhCCh----hhhHHHHHHHHHHHHHHHHHHHHHHHheecHHH
Confidence 34444444 37888998888888888899987 889999999999999999987777777777543
No 50
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=84.36 E-value=10 Score=36.56 Aligned_cols=112 Identities=14% Similarity=0.077 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHHHccCchhHHHHHhhhCCCCccccchhhhhHHHHHHHHHHHHhhhhh-hhhccCCc--cccccccccc
Q 025701 16 MWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGF-GYAAFGDN--TPGNLLTGFG 92 (249)
Q Consensus 16 ~~~~~~~~gi~~faf~~h~~~~~I~~~m~~p~~~~~~~~~~~~~s~~i~~~~y~~~g~~-GY~~fG~~--~~~~il~~~~ 92 (249)
+.++++++-+..|+|.+--.+-..-+|-||| +++.+++++.++..+..+|+...+. |-..=.++ ..++....-+
T Consensus 231 f~Gv~s~~~~~~fsf~G~e~va~~a~E~kNP---~k~IP~ai~~s~~ri~~~Yi~~~~~l~l~vpy~~~~L~~~~~~~sp 307 (554)
T KOG1286|consen 231 FKGVLSGAATAFFSFIGFELVATTAEEAKNP---RKAIPKAIKQSLLRILLFYILSSIVLGLLVPYNDPRLDPGAALASP 307 (554)
T ss_pred cceeeHHHHHHHHHHhhHHHHHHHHHhccCC---cccccHHHHHHHHHHHHHHHHHHHHheEEeccCccccCCCCccccH
Confidence 6677889999999999999999999999999 5999999999999999999876653 22222222 2222210000
Q ss_pred CC---CchHHHH---HHHHHHHHHHHhhhhccccchHHHHHHHH
Q 025701 93 FY---EPYWLID---LANAFIVIHLVGGYQVYSQPIFAHFEKWI 130 (249)
Q Consensus 93 ~~---~~~~~~~---i~~i~~~i~~~~s~pl~~~p~~~~~e~~~ 130 (249)
.. +..+... +.|+..++.++.+---..++.-..+..+-
T Consensus 308 F~iai~~~~~k~~~~ivna~iL~~~~s~~n~~~y~~sR~l~amA 351 (554)
T KOG1286|consen 308 FVIAIGNAGAKYLPHIVNAGILIGLLSSLNSSLYAGSRVLYALA 351 (554)
T ss_pred HHHHHhccCccccchhhhHHHHHHHHHHHHHHhHHhHHHHHHHH
Confidence 00 0011222 66666666666555445556666655553
No 51
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=81.62 E-value=35 Score=32.67 Aligned_cols=66 Identities=11% Similarity=-0.029 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHHccCchhHHHHHhhhCCCCccccchhhhhHHHHHHHHHHHHhhhhhhhhccCCcc
Q 025701 15 KMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNT 83 (249)
Q Consensus 15 ~~~~~~~~~gi~~faf~~h~~~~~I~~~m~~p~~~~~~~~~~~~~s~~i~~~~y~~~g~~GY~~fG~~~ 83 (249)
+-|.+.-++-.-+..+.|--....+.+|-||+ .++-+|++..+..+..++=.++-+.-..+-++|.
T Consensus 250 ~G~afil~f~~~~wt~sGyDa~~H~aEE~~nA---sk~aPrgIi~s~~i~~i~gw~~~I~i~~~i~~D~ 315 (550)
T KOG1289|consen 250 NGWAFILGFFNPAWTMSGYDAAAHMAEETKNA---SKAAPRGIISSIAIGFILGWIIIIGIAYTIPDDL 315 (550)
T ss_pred chHHHHHhhccceeEEeccCchHHHHHHhcch---hhhccHHHHHHHHHHHHHHHHHHHHHHHhccchH
Confidence 66777777888888888888889999999997 4888999998888887776555555555555443
No 52
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=81.24 E-value=20 Score=34.28 Aligned_cols=51 Identities=14% Similarity=0.184 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHccCchhHHHHHhhhCCCCccccchhhhhHHHHHHHHHHHH
Q 025701 16 MWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYL 69 (249)
Q Consensus 16 ~~~~~~~~gi~~faf~~h~~~~~I~~~m~~p~~~~~~~~~~~~~s~~i~~~~y~ 69 (249)
+.++...+-+..|||.+.-.+---..|=+|| ++..+|+++-.+.=..++|+
T Consensus 233 f~g~~~v~v~a~Fsf~GtElvgiaAgEs~nP---~K~iPkAik~vfwRIl~FYi 283 (541)
T COG0833 233 FKGFCSVFVIAAFSFSGTELVGLAAGESENP---RKSIPKAIKQVFWRILLFYI 283 (541)
T ss_pred hHHHHHHHhhheeeeeceeeeeeeecccCCc---hhhhHHHHHHHHHHHHHHHH
Confidence 6777888888999999999888888999998 58999999988877777775
No 53
>KOG4812 consensus Golgi-associated protein/Nedd4 WW domain-binding protein [General function prediction only]
Probab=77.66 E-value=5.2 Score=34.00 Aligned_cols=77 Identities=9% Similarity=0.178 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHhCCChHHHHHHH---------hhhhhhhhhhhhhhhhhhhhcccchh-----hHHHHHHHHHHHHHHHH
Q 025701 166 VYVVSVTAIAMSFPYFNQVLGVI---------GGVIFWPLTIYFPVEMYFKQMNIEAW-----TRKWVMLRVFSYVCFIV 231 (249)
Q Consensus 166 ~~~~~~~~iAi~vP~~~~vl~l~---------Ga~~~~~l~filP~l~~l~~~~~~~~-----~~~~~~~~~~~~~g~~~ 231 (249)
..++.++++|..++.++.++..+ ||.+|.-+++|= |+.+-|.+.. +-.+|+-|++.++|+++
T Consensus 161 ~~F~~af~vAflFnwIGFlltycl~tT~agRYGA~~GfGLsLik----wilIv~~sd~f~~y~n~q~wLwwi~~vlG~ll 236 (262)
T KOG4812|consen 161 GIFMWAFIVAFLFNWIGFLLTYCLTTTHAGRYGAISGFGLSLIK----WILIVRFSDDFESYFNGQYWLWWIFLVLGLLL 236 (262)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhhccchhhhe----eeEEeecccccccccccchHHHHHHHHHHHHH
Confidence 45566678888899888877765 888887777776 5554332211 11245556778899998
Q ss_pred HHHHHHH--HHHHHHhh
Q 025701 232 STFGLVG--SIQGIISA 246 (249)
Q Consensus 232 ~v~g~~~--si~~ii~~ 246 (249)
..-|++. .++++-+.
T Consensus 237 ~lr~~i~YikVrrm~~~ 253 (262)
T KOG4812|consen 237 FLRGFINYIKVRRMEEK 253 (262)
T ss_pred HHHHHHhHHHHhhHHHH
Confidence 8888754 45555443
No 54
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.
Probab=72.63 E-value=74 Score=28.99 Aligned_cols=44 Identities=11% Similarity=0.181 Sum_probs=31.0
Q ss_pred hhHHHHHhhhCCCCccccchhhhhHHHHHHHHHHHHhhhhhhhhccCC
Q 025701 34 LILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGD 81 (249)
Q Consensus 34 ~~~~~I~~~m~~p~~~~~~~~~~~~~s~~i~~~~y~~~g~~GY~~fG~ 81 (249)
...++..+..|+| ++.......+..+...+...+|...-.+.++
T Consensus 190 ~~~~DysRy~k~~----~~~~~~~~~G~~i~~~~~~~~G~~~~~a~~~ 233 (386)
T TIGR02358 190 PLIADYTRFARNP----RHVFLGTVLGYFIGSCWMYFLGLAVTLATGQ 233 (386)
T ss_pred HHccchhhhcCCC----cceehHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3467777777765 6666666777777777788888777666654
No 55
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=71.24 E-value=21 Score=33.05 Aligned_cols=51 Identities=22% Similarity=0.266 Sum_probs=37.7
Q ss_pred hhhHHHHHHHHHHHHHHhCC-ChHHHHHHHhhhhhhhhhhhhhhhhhhhhcc
Q 025701 160 RLCFRTVYVVSVTAIAMSFP-YFNQVLGVIGGVIFWPLTIYFPVEMYFKQMN 210 (249)
Q Consensus 160 r~~~r~~~~~~~~~iAi~vP-~~~~vl~l~Ga~~~~~l~filP~l~~l~~~~ 210 (249)
|..........+.+.++..| -+....+.+|++..+..+-++|.+++.+-++
T Consensus 324 r~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~iga~i~~~ll~~~p~~ 375 (415)
T COG0814 324 RKKTGLLTFLPPLIFALLYPWGFAIALGYAGGLIATIGAPIIPALLFIKPRK 375 (415)
T ss_pred chhhhhhhHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455566666677776 4667788889899999999999999988543
No 56
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism]
Probab=66.30 E-value=44 Score=33.54 Aligned_cols=188 Identities=14% Similarity=0.172 Sum_probs=91.3
Q ss_pred HHHHHHHHHHccCchhHHHHHhhhCCCCccccchhhhhHHHHHHHHHHHHhh-hhhhhh--------ccCCccccccc-c
Q 025701 20 AQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFC-GGFGYA--------AFGDNTPGNLL-T 89 (249)
Q Consensus 20 ~~~~gi~~faf~~h~~~~~I~~~m~~p~~~~~~~~~~~~~s~~i~~~~y~~~-g~~GY~--------~fG~~~~~~il-~ 89 (249)
+.-+|++.=|-++...=-.--.++||| ++..+-....|...+..+|+.- -+||-- -||+.+.++.. .
T Consensus 413 tlLvgIfFPsVTGImaGSNrSGDLkDa---QkSIPvGTI~AilTTS~vYlssv~lFGa~i~~~vLRDKfG~sv~g~lVva 489 (1075)
T KOG2082|consen 413 TLLVGIFFPSVTGIMAGSNRSGDLKDA---QKSIPVGTIAAILTTSFVYLSSVVLFGACIEGVVLRDKFGQSVGGNLVVA 489 (1075)
T ss_pred HHHHHhhccccceeeecCCCCccccch---hhcCchhhhHHHHHHHHHHHHHHHHHHHhhcchhhhhhhhhhccCcEEEE
Confidence 346666665655555555556688997 3778888888888888888643 333322 36777776544 3
Q ss_pred cccCCCchHHHHHHH----HHHHHHHHhhhhccccc-hHHHHHHHHhhhCCCCCCCCCccccCCCCCCcCcCCcchhhHH
Q 025701 90 GFGFYEPYWLIDLAN----AFIVIHLVGGYQVYSQP-IFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFR 164 (249)
Q Consensus 90 ~~~~~~~~~~~~i~~----i~~~i~~~~s~pl~~~p-~~~~~e~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~r~~~r 164 (249)
+++=-.| |...++. ....++.+++-|=..+. +++.+--.+.. +.+.+ .|. .+.+.++.
T Consensus 490 ~laWPsP-wVi~IGsFlST~GAgLQsLtgAPRLLQAIAkD~IiPfL~~-F~~~~-~ng--------------EPt~aLlL 552 (1075)
T KOG2082|consen 490 TLAWPSP-WVIVIGSFLSTCGAGLQSLTGAPRLLQAIAKDDIIPFLAP-FGHGK-ANG--------------EPTWALLL 552 (1075)
T ss_pred EecCCCc-eeeehhHHHHHhHHHHhhhcCcHHHHHHHhhcCccchhhh-hcccc-CCC--------------CccHHHHH
Confidence 3331023 4333332 22345555555532221 11111111110 00000 011 12232222
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHhhhhhhhhhhhh---hhhhhhhhcccchhhHHHHHHHHHHHHHHHHH
Q 025701 165 TVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYF---PVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVS 232 (249)
Q Consensus 165 ~~~~~~~~~iAi~vP~~~~vl~l~Ga~~~~~l~fil---P~l~~l~~~~~~~~~~~~~~~~~~~~~g~~~~ 232 (249)
+. +.+-.++.+-+++.+-.++-=+. .+||.+ -|..+-.++.+.++.+-++-||.+.++|..+|
T Consensus 553 T~---~Ice~gILigslD~iApilsmFF--LMCY~fVNLaCavqtLLrtPnWRPRfkyyHW~LSflG~sLC 618 (1075)
T KOG2082|consen 553 TA---IICECGILIGSLDLIAPILSMFF--LMCYLFVNLACAVQTLLRTPNWRPRFKYYHWSLSFLGASLC 618 (1075)
T ss_pred HH---HHHHhhheeechhHHHHHHHHHH--HHHHHHHhHHHHHHHHhcCCCCCccchhhhhHHHHHHHHHH
Confidence 32 22334556666665544432221 233332 23344445666666655577888888877555
No 57
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=64.89 E-value=1.2e+02 Score=28.34 Aligned_cols=27 Identities=7% Similarity=0.093 Sum_probs=18.0
Q ss_pred ccchhhhhHHHHHHHHHHHHhhhhhhh
Q 025701 50 NQTMKKASTMSIITTTIFYLFCGGFGY 76 (249)
Q Consensus 50 ~~~~~~~~~~s~~i~~~~y~~~g~~GY 76 (249)
.++.+|...++......++....+.|.
T Consensus 266 ~~~a~~~~~~~~~~~~~~~~~~~~~G~ 292 (483)
T PRK09442 266 SKALHRGIIIGTIVVGFLMFGMHLAGA 292 (483)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 378888877776666666665555553
No 58
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=63.67 E-value=1.2e+02 Score=27.76 Aligned_cols=42 Identities=17% Similarity=0.244 Sum_probs=24.4
Q ss_pred chhHHHHHh-hhCCCCccccchhhhhHHHHH---HHHHHHHhhhhhhhh
Q 025701 33 SLILIEIQD-TLKSPPPANQTMKKASTMSII---TTTIFYLFCGGFGYA 77 (249)
Q Consensus 33 h~~~~~I~~-~m~~p~~~~~~~~~~~~~s~~---i~~~~y~~~g~~GY~ 77 (249)
-..+-.+.+ |+||| +++.++.+..+.. ....+|.-.+..|-.
T Consensus 197 ~iiv~~i~~~g~~~~---~~~~~~~i~~G~ia~i~l~~vY~~L~~lGa~ 242 (378)
T TIGR00796 197 IIVVNAIRSRGVTKP---KKITKYTIKAGLIAAVLLAFIYLSLFYLGAT 242 (378)
T ss_pred HHHHHHHHHhCCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 344455555 89987 4667777776663 333445555555543
No 59
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=62.50 E-value=14 Score=32.48 Aligned_cols=65 Identities=20% Similarity=0.253 Sum_probs=52.9
Q ss_pred hHHHHHHHHHHHHHHHccCchhHHHHHhhhCCCCccccchhhhhHHHHHHHHHHHHhhhhhhhhccCCc
Q 025701 14 EKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDN 82 (249)
Q Consensus 14 ~~~~~~~~~~gi~~faf~~h~~~~~I~~~m~~p~~~~~~~~~~~~~s~~i~~~~y~~~g~~GY~~fG~~ 82 (249)
.+..+.+.+.-...+.|.+-....-+...+||| ++.+|....|..+...+|...-+..-..||.+
T Consensus 172 ~g~~~i~~~~~~~~~~~~~~~~~l~~~p~~~~~----~~~~k~~~~~~~~~~~~~~~~~~~~i~vfG~~ 236 (320)
T PF03845_consen 172 SGIKPILKGSLVISFPFGGIEILLFLFPFVKDK----KKLKKSLLIAILISGLFLLFIIFITIGVFGPE 236 (320)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc----hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 456677777777888888888888899999987 88889999999888888887777777777754
No 60
>PRK11375 allantoin permease; Provisional
Probab=60.58 E-value=1.5e+02 Score=27.95 Aligned_cols=64 Identities=9% Similarity=0.170 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHcc-CchhHHHHHhhhCCCCccccchhhhhHHHHHHHHHHHHhhhhhh----hhccCCcc
Q 025701 16 MWLVAQALGDIAFAYP-YSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFG----YAAFGDNT 83 (249)
Q Consensus 16 ~~~~~~~~gi~~faf~-~h~~~~~I~~~m~~p~~~~~~~~~~~~~s~~i~~~~y~~~g~~G----Y~~fG~~~ 83 (249)
.+.+..++...+=++. .-.+.++.-+-.|++ ++-.+....++.+...+...+|+.. ...||+..
T Consensus 226 ~~~~~~~i~~vig~~~~~~~~~~D~tRy~k~~----~~~~~~~~~g~~i~~~~~~~~g~~~~~~a~~~~g~~~ 294 (484)
T PRK11375 226 GFLFLVVINAVVAVWAAPAVSASDFTQNAHSF----RAQALGQTLGLVVAYILFAVASVCIIAGASIHYGADT 294 (484)
T ss_pred HHHHHHHHHHHHHHHHHHHccccchhcccCCh----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 4555555544333343 344778888888875 4444444445545444443333332 34666544
No 61
>PF05805 L6_membrane: L6 membrane protein; InterPro: IPR008661 This family consists of several eukaryotic L6 membrane proteins. L6, IL-TMP, and TM4SF5 are cell surface proteins predicted to have four transmembrane domains. Previous sequence analysis led to their assignment as members of the tetraspanin superfamily it has now been found that that they are not significantly related to genuine tetraspanins, but instead constitute their own L6 family []. Several members of this family have been implicated in Homo sapiens cancer [, ].; GO: 0016021 integral to membrane
Probab=57.72 E-value=22 Score=29.33 Aligned_cols=64 Identities=11% Similarity=0.150 Sum_probs=46.4
Q ss_pred HHHHHHHhhhhhhhhhhhhhhhhhhhhcccchh----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025701 182 NQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAW----------TRKWVMLRVFSYVCFIVSTFGLVGSIQGIIS 245 (249)
Q Consensus 182 ~~vl~l~Ga~~~~~l~filP~l~~l~~~~~~~~----------~~~~~~~~~~~~~g~~~~v~g~~~si~~ii~ 245 (249)
+...-..|++.+.=+..++|+...+..+++.-. +.......+...+|+++.+..+..|..++.+
T Consensus 44 s~~vw~f~Gi~GgGlmvl~pa~~~l~~~~~~cCgccg~~~c~~r~~M~~Sil~a~igi~Ga~Yc~ivS~~aL~~ 117 (195)
T PF05805_consen 44 SCEVWYFGGIIGGGLMVLLPAIVFLAAGKRDCCGCCGNECCGNRCGMFLSILFAAIGILGAGYCFIVSGLALSE 117 (195)
T ss_pred chhheecCccccchHHHHHHHHHHHHhCCCcccccccCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 345566788888889999999999988765211 2234566777788888888888888777765
No 62
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=56.68 E-value=1.7e+02 Score=27.23 Aligned_cols=55 Identities=18% Similarity=0.025 Sum_probs=40.6
Q ss_pred CcchhhHHHHHHHHHHHHHHhCCChHHHHHHHhhhhhhhhhhhhhhhhhhhhccc
Q 025701 157 NPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYFKQMNI 211 (249)
Q Consensus 157 ~~~r~~~r~~~~~~~~~iAi~vP~~~~vl~l~Ga~~~~~l~filP~l~~l~~~~~ 211 (249)
+.+|...|....+.+.++.+.+-+.+.++.+.+.+.+-.+-+..++++.+..+|+
T Consensus 324 ~~r~~i~~~~~~ip~~~i~i~~g~~~~lL~~sqvl~~~~lP~~~~~ll~~~~~k~ 378 (416)
T COG1914 324 WRRRLITRTFAIVPGLAIIILFGDPARLLVFSQVLLSVILPFALIPLLLLTSDKK 378 (416)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHcChh
Confidence 3566777776666655555555599999999999998888888877777766554
No 63
>PRK13183 psbN photosystem II reaction center protein N; Provisional
Probab=53.01 E-value=17 Score=22.59 Aligned_cols=31 Identities=29% Similarity=0.366 Sum_probs=22.9
Q ss_pred hhhhhHHHHHHHHHHHHhhhhhhhhccCCcc
Q 025701 53 MKKASTMSIITTTIFYLFCGGFGYAAFGDNT 83 (249)
Q Consensus 53 ~~~~~~~s~~i~~~~y~~~g~~GY~~fG~~~ 83 (249)
|..+...+..+.+++..+.|..-|-+||.-.
T Consensus 4 me~A~~~~i~i~~lL~~~TgyaiYtaFGppS 34 (46)
T PRK13183 4 MSPALSLAITILAILLALTGFGIYTAFGPPS 34 (46)
T ss_pred cchhHHHHHHHHHHHHHHhhheeeeccCCcc
Confidence 4456667777778888888888888888653
No 64
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=50.37 E-value=2.1e+02 Score=26.45 Aligned_cols=67 Identities=19% Similarity=0.154 Sum_probs=43.3
Q ss_pred hhHHHHHHHHHHH-HHHHccCchhHHHHHhhhCCCCccccchhhhhHHHHHHHHHHHHhhhhhhhhc----cCCcc
Q 025701 13 IEKMWLVAQALGD-IAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAA----FGDNT 83 (249)
Q Consensus 13 ~~~~~~~~~~~gi-~~faf~~h~~~~~I~~~m~~p~~~~~~~~~~~~~s~~i~~~~y~~~g~~GY~~----fG~~~ 83 (249)
....+.++.++.. +.+.-..-.+.++..+.+|+| ++-.+....++.........+|+.+-.. +|+..
T Consensus 203 ~~~~~~f~~~~~~~~g~~~s~~~~~~DysRy~~~~----~~~~~~~~~~~~~~~~~~~~~g~~~a~~~~~~~g~~~ 274 (442)
T TIGR00800 203 STGAWAFLYALSLVIGSFATWATNAPDFTRFGKSK----KTAIWGQFLALPGGFTLTCFFGILGAAAAYAAYGEPY 274 (442)
T ss_pred chhHHHHHHHHHHHHHHHHHHHcCchhhhhhcCCc----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc
Confidence 4456666665555 333345556788899999986 4444556667767777777777777655 77654
No 65
>CHL00020 psbN photosystem II protein N
Probab=48.17 E-value=18 Score=22.23 Aligned_cols=28 Identities=29% Similarity=0.477 Sum_probs=20.3
Q ss_pred hhHHHHHHHHHHHHhhhhhhhhccCCcc
Q 025701 56 ASTMSIITTTIFYLFCGGFGYAAFGDNT 83 (249)
Q Consensus 56 ~~~~s~~i~~~~y~~~g~~GY~~fG~~~ 83 (249)
+...+..+..++..+.|..-|-+||...
T Consensus 4 A~~~~i~i~~ll~~~Tgy~iYtaFGppS 31 (43)
T CHL00020 4 ATLVAIFISGLLVSFTGYALYTAFGQPS 31 (43)
T ss_pred hhhHHHHHHHHHHHhhheeeeeccCCch
Confidence 4556677777777777877888888643
No 66
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=47.25 E-value=2.2e+02 Score=25.82 Aligned_cols=40 Identities=18% Similarity=0.139 Sum_probs=23.4
Q ss_pred HHhhhCCCCccccchhhhhHHHHHHHHHHHHh---hhhhhhhccC
Q 025701 39 IQDTLKSPPPANQTMKKASTMSIITTTIFYLF---CGGFGYAAFG 80 (249)
Q Consensus 39 I~~~m~~p~~~~~~~~~~~~~s~~i~~~~y~~---~g~~GY~~fG 80 (249)
.|+-+.-+ +.++.+|....+......++.. +|+.++..|.
T Consensus 223 ~qR~~a~k--s~~~~r~~~~~~~~~~~~~~~~~~l~G~~a~~~~~ 265 (407)
T TIGR00813 223 VQRCLAAK--SAKHAKKGCLISGVLKLLPMFGAVLPGLIARALYT 265 (407)
T ss_pred hhHHHhcC--CHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45555543 4588888887776555555554 4555544453
No 67
>cd08766 Cyt_b561_ACYB-1_like Plant cytochrome b(561), including the carbon monoxide oxygenase ACYB-1. Cytochrome b(561), as found in plants, similar to the Arabidopsis thaliana ACYB-1 gene product, a cytochrome b561 isoform localized to the tonoplast. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), and might be capable of trans-membrane electron transport from intracellular ascorbate to extracellular ferric chelates. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=45.96 E-value=77 Score=24.83 Aligned_cols=68 Identities=12% Similarity=0.168 Sum_probs=45.4
Q ss_pred cchhhhhHHHHHHHHHHHHhhhhhhhhccCCcccccccccccCCCchHHHHHHHHHHHHHHHhhhhccccch
Q 025701 51 QTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPI 122 (249)
Q Consensus 51 ~~~~~~~~~s~~i~~~~y~~~g~~GY~~fG~~~~~~il~~~~~~~~~~~~~i~~i~~~i~~~~s~pl~~~p~ 122 (249)
++.+|.+....-....+..++|+.--..+.++ ..+-+-++ -.+|+..+..+++.++.+..+..+.+|.
T Consensus 37 k~~~k~iH~~l~~la~~~~vvGl~avf~~~~~--~~~~~~~S--lHSwlGl~t~~L~~lQ~~~G~~~f~~P~ 104 (144)
T cd08766 37 REVQKAVHLTLHLVALVLGIVGIYAAFKFHNE--VGIPNLYS--LHSWLGIGTISLFGLQWLFGFVTFWFPG 104 (144)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHhcc--cCcccccc--HHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 67778888888888888888888444344333 33333333 2468777777788888888776666675
No 68
>PF02468 PsbN: Photosystem II reaction centre N protein (psbN); InterPro: IPR003398 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbN found in PSII. PsbN may have a role in PSII stability, however its actual function unknown. PsbN does not appear to be essential for photoautotrophic growth or normal PSII function.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane
Probab=45.66 E-value=24 Score=21.68 Aligned_cols=28 Identities=25% Similarity=0.422 Sum_probs=20.3
Q ss_pred hhHHHHHHHHHHHHhhhhhhhhccCCcc
Q 025701 56 ASTMSIITTTIFYLFCGGFGYAAFGDNT 83 (249)
Q Consensus 56 ~~~~s~~i~~~~y~~~g~~GY~~fG~~~ 83 (249)
+...+..+.+++-.+.|..-|-+||...
T Consensus 4 a~~~~i~i~~~lv~~Tgy~iYtaFGppS 31 (43)
T PF02468_consen 4 ATVLAIFISCLLVSITGYAIYTAFGPPS 31 (43)
T ss_pred eeeHHHHHHHHHHHHHhhhhhheeCCCc
Confidence 3456677777777888888888998543
No 69
>PRK12768 CysZ-like protein; Reviewed
Probab=44.38 E-value=2e+02 Score=24.53 Aligned_cols=27 Identities=19% Similarity=0.116 Sum_probs=21.3
Q ss_pred hhhCCCCccccchhhhhHHHHHHHHHHHHhhh
Q 025701 41 DTLKSPPPANQTMKKASTMSIITTTIFYLFCG 72 (249)
Q Consensus 41 ~~m~~p~~~~~~~~~~~~~s~~i~~~~y~~~g 72 (249)
.++.|| ++.+++..+.+.+..++....
T Consensus 10 ~ql~~~-----~~r~vl~~~~~lt~~l~~~~~ 36 (240)
T PRK12768 10 ARLLSP-----PMRSVFWKVLGLTLLLLVVLW 36 (240)
T ss_pred HHhCCH-----HHHHHHHHHHHHHHHHHHHHH
Confidence 456664 889999999988888887764
No 70
>PRK12488 acetate permease; Provisional
Probab=40.97 E-value=3.3e+02 Score=26.08 Aligned_cols=41 Identities=12% Similarity=0.137 Sum_probs=22.6
Q ss_pred HHhhhCCCCccccchhhhhHHHHHHHHHHH---HhhhhhhhhccCC
Q 025701 39 IQDTLKSPPPANQTMKKASTMSIITTTIFY---LFCGGFGYAAFGD 81 (249)
Q Consensus 39 I~~~m~~p~~~~~~~~~~~~~s~~i~~~~y---~~~g~~GY~~fG~ 81 (249)
+++-+.-+ +.++-+|...++......+| ..+|+.++..|++
T Consensus 281 ~qR~~aak--s~k~ar~s~~~~~~~~~~~~~~~~~~G~~a~~l~~~ 324 (549)
T PRK12488 281 LMRFFTVS--DAREARKSVLYATGFIGYFYLLIIVVGFGAIVMVGT 324 (549)
T ss_pred HHHhhcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34444433 44777787777654444433 4556666666654
No 71
>PHA02680 ORF090 IMV phosphorylated membrane protein; Provisional
Probab=40.12 E-value=1.3e+02 Score=21.47 Aligned_cols=71 Identities=8% Similarity=0.130 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHccCchhHHHHHhhhCCCCccccchhhhhHHHHHHHHHHHHhhhhhhhhccCCcccccccccc
Q 025701 17 WLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGF 91 (249)
Q Consensus 17 ~~~~~~~gi~~faf~~h~~~~~I~~~m~~p~~~~~~~~~~~~~s~~i~~~~y~~~g~~GY~~fG~~~~~~il~~~ 91 (249)
++-.-..|+...+-.|.....+..+.-.+| ....|+.....++... +-+.+|++.|-.||....+.....+
T Consensus 11 ~s~vli~GIiLL~~ACIFAfidFSK~~s~~--~~~~wRalSii~FIlG--~vl~lGilifs~y~~C~~~~~~~r~ 81 (91)
T PHA02680 11 YSGVLICGVLLLTAACVFAFVDFSKNTSNV--TDYVWRALSVTCFIVG--AVLLLGLFVFSMYRKCSGSMPYERL 81 (91)
T ss_pred ccHHHHHHHHHHHHHHHHhhhhhhccCCCC--cchhHHHHHHHHHHHH--HHHHHHHHHHHHhcccCCCceeecc
Confidence 333446788888888888888887766565 3444433333333322 3456778889999854444333444
No 72
>PLN02680 carbon-monoxide oxygenase
Probab=39.33 E-value=1.5e+02 Score=25.21 Aligned_cols=68 Identities=12% Similarity=0.190 Sum_probs=46.9
Q ss_pred cchhhhhHHHHHHHHHHHHhhhhhhhhccCCcccccccccccCCCchHHHHHHHHHHHHHHHhhhhccccch
Q 025701 51 QTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPI 122 (249)
Q Consensus 51 ~~~~~~~~~s~~i~~~~y~~~g~~GY~~fG~~~~~~il~~~~~~~~~~~~~i~~i~~~i~~~~s~pl~~~p~ 122 (249)
++.+|.+....=....+..++|+.--..+.|+ .++-+-++ -++|+.....+++.++.+..+..+.+|.
T Consensus 76 k~~~K~iH~~L~~lA~~l~vvGl~avfk~hn~--~~~~nfyS--lHSWlGl~t~iL~~lQ~~~Gf~~f~~P~ 143 (232)
T PLN02680 76 KNLKKLVHLTLQFLAFCLSLIGVWAALKFHNE--KGIDNFYS--LHSWLGLACLFLFSLQWAAGFVTFWYPG 143 (232)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhccc--cCcccccc--HHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 77788889888888888888888554444433 34433333 2568777777888888888877766664
No 73
>PRK11026 ftsX cell division ABC transporter subunit FtsX; Provisional
Probab=35.00 E-value=1.4e+02 Score=26.36 Aligned_cols=27 Identities=7% Similarity=-0.004 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 025701 221 LRVFSYVCFIVSTFGLVGSIQGIISAK 247 (249)
Q Consensus 221 ~~~~~~~g~~~~v~g~~~si~~ii~~~ 247 (249)
.+.+.++|++++.+|.+.++++..+..
T Consensus 280 ~~~l~~~~~~ig~l~s~~s~~r~L~~~ 306 (309)
T PRK11026 280 CLLLLLVCSMIGWVAAWLATVQHLRRF 306 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345567888888888888888777654
No 74
>PF07954 DUF1689: Protein of unknown function (DUF1689) ; InterPro: IPR012470 Family of fungal proteins with unknown function. A member of this family has been found to localise in the mitochondria [].
Probab=34.63 E-value=63 Score=25.63 Aligned_cols=60 Identities=10% Similarity=-0.091 Sum_probs=34.4
Q ss_pred HHHhhhhhhhhhhhhhhhhhhh-hcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025701 186 GVIGGVIFWPLTIYFPVEMYFK-QMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQGIIS 245 (249)
Q Consensus 186 ~l~Ga~~~~~l~filP~l~~l~-~~~~~~~~~~~~~~~~~~~~g~~~~v~g~~~si~~ii~ 245 (249)
++.|+-++....|+.|.+.+.. .+..+.....+-.-.+-.++|+..+++|+..+-....+
T Consensus 33 ~~~~g~~~~~~gF~~Pt~y~~yk~~~~~gv~~~~~~pflSf~lG~~~m~~~~~~~~k~~y~ 93 (152)
T PF07954_consen 33 SNLGGYGGFMAGFFAPTAYYRYKTGAIKGVPVPRQKPFLSFLLGLGAMMAGSQLAGKYQYN 93 (152)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHhcccccCCcCCccCcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677778889999887764 11111111001111233468888888888777666554
No 75
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=33.56 E-value=1.6e+02 Score=26.58 Aligned_cols=42 Identities=14% Similarity=0.115 Sum_probs=18.8
Q ss_pred HHHHHHHHhCCChHHHHHHHhhhhhhhhhhhhhhh-hhhhhccc
Q 025701 169 VSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVE-MYFKQMNI 211 (249)
Q Consensus 169 ~~~~~iAi~vP~~~~vl~l~Ga~~~~~l~filP~l-~~l~~~~~ 211 (249)
+++.++++..|+.+ +..+..-..+....-.+|++ +-+..||-
T Consensus 352 ~i~~~la~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~gl~wkr~ 394 (406)
T PF00474_consen 352 IIAILLALFFPDSG-IIDLILFAFGILAAPFFPPLLLGLYWKRA 394 (406)
T ss_dssp HHHHHHGGGGGGSS-HHHHHHHHHTTTHHHHHHHHHHHHH-TT-
T ss_pred HhHHHHHhccccch-HHHHHHHHHHHHHHHHHHHHHHhhccCCC
Confidence 45556677777753 33333333332333344543 44434433
No 76
>COG3296 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.63 E-value=2.4e+02 Score=21.83 Aligned_cols=28 Identities=18% Similarity=0.482 Sum_probs=19.1
Q ss_pred HHHHHHHHHHhCCChHHHHHHHhhhhhhhhhhhhhhhhhhhhc
Q 025701 167 YVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYFKQM 209 (249)
Q Consensus 167 ~~~~~~~iAi~vP~~~~vl~l~Ga~~~~~l~filP~l~~l~~~ 209 (249)
+.-++.+++..+| |+++++ |-+.|...|
T Consensus 22 l~hls~llglllp-fg~llG--------------PlivW~~kK 49 (143)
T COG3296 22 LAHLSALLGLLLP-FGSLLG--------------PLIVWLLKK 49 (143)
T ss_pred HHHHHHHHHHHHH-HHHHHH--------------HHHHHHHHh
Confidence 3345566777788 776666 888887665
No 77
>cd08765 Cyt_b561_CYBRD1 Vertebrate cytochrome b(561), CYBRD1 gene product. Duodenal cytochrome b or ferric-chelate reductase 3, a cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. This protein is expressed at the brush border of duodenal enterocytes and may play a role in the uptake of dietary Fe(3+), facilitating its transport into the mucosal cells. It may also be involved in the recycling of extracellular ascorbate in erythrocyte membranes, and act as a ferrireductase in epithelial cells of the respiratory system. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-me
Probab=31.13 E-value=1.8e+02 Score=23.00 Aligned_cols=69 Identities=16% Similarity=0.164 Sum_probs=48.0
Q ss_pred cchhhhhHHHHHHHHHHHHhhhhhhhhccCCcccccccccccCCCchHHHHHHHHHHHHHHHhhhhccccchH
Q 025701 51 QTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIF 123 (249)
Q Consensus 51 ~~~~~~~~~s~~i~~~~y~~~g~~GY~~fG~~~~~~il~~~~~~~~~~~~~i~~i~~~i~~~~s~pl~~~p~~ 123 (249)
++.+|.+....-....+..++|+..-..+.++. ++ .|+.+ -.+|+..+..+++.++-+..+..+.+|..
T Consensus 44 k~~~k~iH~~L~~~a~~~~i~Gl~avf~~hn~~--~~-~~fyS-lHSwlGl~t~~l~~lQ~~~Gf~~f~~P~~ 112 (153)
T cd08765 44 KLLMKLIHAGLHILAFILAIISVVAVFVFHNAK--NI-PNMYS-LHSWVGLAAVILYPLQLVLGISVYLLPVA 112 (153)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHcccc--CC-Ccccc-HHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 667788888887777777777775554554443 33 33322 24688778888888999999888888863
No 78
>cd08763 Cyt_b561_CYB561 Vertebrate cytochrome b(561), CYB561 gene product. Cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=30.64 E-value=1.9e+02 Score=22.57 Aligned_cols=68 Identities=9% Similarity=0.068 Sum_probs=46.6
Q ss_pred cchhhhhHHHHHHHHHHHHhhhhhhhhccCCcccccccccccCCCchHHHHHHHHHHHHHHHhhhhccccch
Q 025701 51 QTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPI 122 (249)
Q Consensus 51 ~~~~~~~~~s~~i~~~~y~~~g~~GY~~fG~~~~~~il~~~~~~~~~~~~~i~~i~~~i~~~~s~pl~~~p~ 122 (249)
++..|.+....-....+-.++|+..-..+.++ .++ .|+.+ -.+|+..+..+++.++.+..+..+.+|.
T Consensus 37 k~~~k~~H~~L~~la~~~~~~Gl~av~~~h~~--~~~-~hf~S-lHswlGl~t~~L~~lQ~~~G~~~f~~P~ 104 (143)
T cd08763 37 KRSTKILHGLLHIMALVISLVGLVAVFDYHQA--NGY-PDMYS-LHSWCGILTFVLYFLQWLIGFSFFLFPG 104 (143)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHccc--cCC-Ccccc-HHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 55567788888888888888887655445444 232 33332 2468777777888889898888877775
No 79
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=29.45 E-value=4.6e+02 Score=24.31 Aligned_cols=29 Identities=21% Similarity=0.181 Sum_probs=18.0
Q ss_pred ccchhhhhHHHHHHHHHHHHhhhhhhhhc
Q 025701 50 NQTMKKASTMSIITTTIFYLFCGGFGYAA 78 (249)
Q Consensus 50 ~~~~~~~~~~s~~i~~~~y~~~g~~GY~~ 78 (249)
.++.+|....+..+...++....+.|..+
T Consensus 265 ~~~a~~~~~~~~~~~~~~~~~~~~~G~~a 293 (471)
T TIGR02119 265 SKAMHRAMIIGTIVVGIIMLGMHLAGVLG 293 (471)
T ss_pred HHHHhhhHhHHHHHHHHHHHHHHHHHHhh
Confidence 47788887777655555555555555433
No 80
>PLN02351 cytochromes b561 family protein
Probab=29.18 E-value=2.4e+02 Score=24.18 Aligned_cols=76 Identities=11% Similarity=0.143 Sum_probs=46.6
Q ss_pred HHhhhCCCCccccchhhhhHHHHHHHHHHHHhhhhhhhhccCCcccccccccccCCCchHHHHHHHHHHHHHHHhhhhcc
Q 025701 39 IQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVY 118 (249)
Q Consensus 39 I~~~m~~p~~~~~~~~~~~~~s~~i~~~~y~~~g~~GY~~fG~~~~~~il~~~~~~~~~~~~~i~~i~~~i~~~~s~pl~ 118 (249)
+++.++.+ ++.+|.+....-...++..++|+.. .|-++ ++...|+-+. ++|+....-+++.++-+..+..+
T Consensus 72 vYR~~~~~----~k~~K~lH~~Lh~~Ali~~vvGl~a--~fh~~--~~~i~nlySL-HSWlGl~tv~Lf~lQwv~Gf~~F 142 (242)
T PLN02351 72 VHRWLPGS----RKTKKSVHLWLQGLALASGVFGIWT--KFHGQ--DGIVANFYSL-HSWMGLICVSLFGAQWLTGFMSF 142 (242)
T ss_pred Hhhccccc----chHHHHHHHHHHHHHHHHHHHHHHH--HHhcc--cCCccchhHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455543 5568888888766676666776655 34322 2344555332 46877666677777777777666
Q ss_pred ccchH
Q 025701 119 SQPIF 123 (249)
Q Consensus 119 ~~p~~ 123 (249)
.+|..
T Consensus 143 ~~P~~ 147 (242)
T PLN02351 143 WHRGE 147 (242)
T ss_pred hcCCC
Confidence 55543
No 81
>KOG1619 consensus Cytochrome b [Energy production and conversion]
Probab=28.94 E-value=1.3e+02 Score=25.66 Aligned_cols=92 Identities=15% Similarity=0.113 Sum_probs=60.7
Q ss_pred HHHHHHHccCchhHHHHHhhhCCCCccccchhhhhHHHHHHHHHHHHhhhhhhhhccCCcccccccccccCCCchHHHHH
Q 025701 23 LGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDL 102 (249)
Q Consensus 23 ~gi~~faf~~h~~~~~I~~~m~~p~~~~~~~~~~~~~s~~i~~~~y~~~g~~GY~~fG~~~~~~il~~~~~~~~~~~~~i 102 (249)
+.++-|-|- ++...-+|+.-+. +.++.+|.+....=++.+...++|+..-..+-++.. ..|+-+ -++|+...
T Consensus 61 lMviGfI~l-~GeAiL~YR~~r~---~~k~~~KliH~~LH~~Alvl~i~gl~avf~~hn~~~---i~NfyS-LHSWlGl~ 132 (245)
T KOG1619|consen 61 LMVIGFIYL-QGEAILIYRVFRY---TSKKVSKLIHLGLHIIALVLAIIGLCAVFDSHNLVG---IANFYS-LHSWLGLC 132 (245)
T ss_pred HHHHHHHHh-ccceeeeeehhhh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC---ccceee-HHHHHHHH
Confidence 334444442 4444445555342 568999999999888888888888888877777665 333322 14687777
Q ss_pred HHHHHHHHHHhhhhccccch
Q 025701 103 ANAFIVIHLVGGYQVYSQPI 122 (249)
Q Consensus 103 ~~i~~~i~~~~s~pl~~~p~ 122 (249)
+-+++..+-+..|--+.+|.
T Consensus 133 ~v~ly~~Q~v~GF~tfl~pg 152 (245)
T KOG1619|consen 133 VVILYSLQWVFGFFTFLFPG 152 (245)
T ss_pred HHHHHHHHHHHHHHHHhcCC
Confidence 77777887777776655554
No 82
>cd08764 Cyt_b561_CG1275_like Non-vertebrate eumetazoan cytochrome b(561). Cytochrome b(561), as found in non-vertebrate eumetazoans, similar to the Drosophila melanogaster CG1275 gene product. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=28.60 E-value=2.1e+02 Score=24.03 Aligned_cols=70 Identities=13% Similarity=0.075 Sum_probs=46.8
Q ss_pred cchhhhhHHHHHHHHHHHHhhhhhhhhccCCcccccccccccCCCchHHHHHHHHHHHHHHHhhhhccccch
Q 025701 51 QTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPI 122 (249)
Q Consensus 51 ~~~~~~~~~s~~i~~~~y~~~g~~GY~~fG~~~~~~il~~~~~~~~~~~~~i~~i~~~i~~~~s~pl~~~p~ 122 (249)
++..|.+....-....+..++|+..-..+-|+.++.+-+-++ -++|+.....+++.++.+..+..+.+|.
T Consensus 54 k~~~k~~H~~L~~lAl~~~ivGl~avf~~hn~~~~~~~hfyS--lHSwlGl~t~~L~~lQ~~~Gf~~fl~P~ 123 (214)
T cd08764 54 KKRLKLLHAVLHLLAFILAVIGLKAVFDSHNLAKPPIPNMYS--LHSWLGLTAVILFSLQWVGGFVSFLFPG 123 (214)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcccc--hHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 445677888887777777788765544455555445443333 2568777777788888888887666664
No 83
>PF11345 DUF3147: Protein of unknown function (DUF3147); InterPro: IPR021493 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=28.05 E-value=2.5e+02 Score=20.74 Aligned_cols=78 Identities=13% Similarity=0.111 Sum_probs=36.7
Q ss_pred chhhHHHHHHHHHHHHHHhCCChHHHHHHHhhhhhhhhhhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 025701 159 LRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVG 238 (249)
Q Consensus 159 ~r~~~r~~~~~~~~~iAi~vP~~~~vl~l~Ga~~~~~l~filP~l~~l~~~~~~~~~~~~~~~~~~~~~g~~~~v~g~~~ 238 (249)
.|+++....+..+.+++-.+|.=+ +-|=++..+..+ +.+++.....+++....+...-......|++.+++-++.
T Consensus 3 irF~~GG~av~~~~ii~~~~~~k~----~GGifAA~PaV~-lasl~~~~~~~~~~~a~~~s~Ga~~G~~~~i~~~l~~~~ 77 (108)
T PF11345_consen 3 IRFLLGGLAVVAAYIISRKLPPKS----FGGIFAAFPAVF-LASLLILGIQHGGKQAAHFSRGAVFGMIGTIICVLVVWF 77 (108)
T ss_pred eeeeeccHHHHHHHHHHHHcCccc----HHHHHHHHHHHH-HHHHHHHHHhcchhhHHHHHhHhHHHHHHHHHHHHHHHH
Confidence 355555666777777777776422 112222333333 336666665443332222222223334444444444444
Q ss_pred HHH
Q 025701 239 SIQ 241 (249)
Q Consensus 239 si~ 241 (249)
.++
T Consensus 78 ~l~ 80 (108)
T PF11345_consen 78 LLK 80 (108)
T ss_pred HHH
Confidence 444
No 84
>PRK09400 secE preprotein translocase subunit SecE; Reviewed
Probab=27.97 E-value=67 Score=21.27 Aligned_cols=31 Identities=13% Similarity=0.275 Sum_probs=18.5
Q ss_pred hhhCCCCccccchhhhhHHHHHHHHHHHHhhhhhhhh
Q 025701 41 DTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYA 77 (249)
Q Consensus 41 ~~m~~p~~~~~~~~~~~~~s~~i~~~~y~~~g~~GY~ 77 (249)
+-=++| +++.+.++...+. +-..++|.+||.
T Consensus 22 ~~~~KP--d~~Ef~~ia~~~~----iG~~i~G~iGf~ 52 (61)
T PRK09400 22 KVARKP--TREEFLLVAKVTG----LGILLIGLIGFI 52 (61)
T ss_pred HHhcCC--CHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 334566 8888888665433 334556666664
No 85
>COG3476 Tryptophan-rich sensory protein (mitochondrial benzodiazepine receptor homolog) [Signal transduction mechanisms]
Probab=27.11 E-value=2e+02 Score=23.03 Aligned_cols=60 Identities=17% Similarity=0.083 Sum_probs=38.6
Q ss_pred HHHHHHHHHccCchhHHHHHhhhCCCCccccchhhhhHHHHHHHHHHHHhhhhhhhhccCCcccc
Q 025701 21 QALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPG 85 (249)
Q Consensus 21 ~~~gi~~faf~~h~~~~~I~~~m~~p~~~~~~~~~~~~~s~~i~~~~y~~~g~~GY~~fG~~~~~ 85 (249)
.++-...-++....+.+.-++.+|+| +--+.-..... +=+++|.++|+.+|+.+..+..+
T Consensus 15 ~~~~~a~gs~~~~~~~~~wy~~L~kP----~w~pp~~~f~~-vWtvLy~l~~iSa~lvW~~~~~~ 74 (161)
T COG3476 15 VALAVALGSFFISSRDPNWYNNLKKP----FWLPPEWAFPP-VWTVLYALIGISAYLVWEKGPGQ 74 (161)
T ss_pred HHHHHHHHHHHhccccHHHHHhccCC----CCCChHHHhhH-HHHHHHHHHHHHHHHHHHHcCCC
Confidence 34444444555667777799999998 32222222222 34678999999999999765443
No 86
>TIGR00439 ftsX putative protein insertion permease FtsX. FtsX is an integral membrane protein encoded in the same operon as signal recognition particle docking protein FtsY and FtsE. It belongs to a family of predicted permeases and may play a role in the insertion of proteins required for potassium transport, cell division, and other activities. FtsE is a hydrophilic nucleotide-binding protein that associates with the inner membrane by means of association with FtsX.
Probab=26.59 E-value=2.6e+02 Score=24.73 Aligned_cols=28 Identities=11% Similarity=0.078 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 025701 220 MLRVFSYVCFIVSTFGLVGSIQGIISAK 247 (249)
Q Consensus 220 ~~~~~~~~g~~~~v~g~~~si~~ii~~~ 247 (249)
....++.+|++++.+|.+.+++.-.+..
T Consensus 279 ~~~~l~~~g~~lg~lgs~~s~~r~Lr~~ 306 (309)
T TIGR00439 279 ELGLLLGFCIALGVVGAWLATTQHLLCF 306 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3446677888899999999888877654
No 87
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=26.45 E-value=5.5e+02 Score=24.15 Aligned_cols=84 Identities=18% Similarity=0.162 Sum_probs=46.0
Q ss_pred CchhHHHHHhhhCCCCccccchhhhhHHHHHHHHHHHHhhhhhhhhccCCcc-cccccccccCCCchHHHHHHHHHHHHH
Q 025701 32 YSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNT-PGNLLTGFGFYEPYWLIDLANAFIVIH 110 (249)
Q Consensus 32 ~h~~~~~I~~~m~~p~~~~~~~~~~~~~s~~i~~~~y~~~g~~GY~~fG~~~-~~~il~~~~~~~~~~~~~i~~i~~~i~ 110 (249)
.-.-..+..+-+|+|+| ++.-.....+......+-+..|...-.+=|+.- ..++...+. + +...+-+..+++
T Consensus 209 w~~~~aDysRy~~~~t~--~~~~~~~~~G~~l~~~~~~ilGa~~a~a~g~~~~~~~~~~~~G---~--~g~~~~lil~l~ 281 (442)
T COG1457 209 WGPYAADYSRYAPSPTP--SKAFLAAVLGFFLGTSFMMILGAALAAAAGNADSIADVMLGLG---G--FGLPAILILVLG 281 (442)
T ss_pred hhhhhhhhhhhcCCCch--HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHhcc---c--HHHHHHHHHHHH
Confidence 34556677888888721 233334445556666677777887777777665 233333332 2 344444555555
Q ss_pred HHhhhhccccch
Q 025701 111 LVGGYQVYSQPI 122 (249)
Q Consensus 111 ~~~s~pl~~~p~ 122 (249)
.+.+=-.+.++.
T Consensus 282 ~~ttN~~nlYsa 293 (442)
T COG1457 282 TVTTNANNLYSA 293 (442)
T ss_pred HHhcCcHHHHHH
Confidence 555544444433
No 88
>cd08763 Cyt_b561_CYB561 Vertebrate cytochrome b(561), CYB561 gene product. Cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=26.38 E-value=1.5e+02 Score=23.15 Aligned_cols=26 Identities=15% Similarity=0.325 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025701 217 KWVMLRVFSYVCFIVSTFGLVGSIQG 242 (249)
Q Consensus 217 ~~~~~~~~~~~g~~~~v~g~~~si~~ 242 (249)
.+..++.+-.++++.+++|.++..+.
T Consensus 40 ~k~~H~~L~~la~~~~~~Gl~av~~~ 65 (143)
T cd08763 40 TKILHGLLHIMALVISLVGLVAVFDY 65 (143)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577777778888888888776543
No 89
>PF04835 Pox_A9: A9 protein conserved region; InterPro: IPR006920 This entry represents a family of Chordopoxvirus A9 proteins. Chordopoxvirus belongs to the family Poxviridae and is the cause of vertebrate infections [].
Probab=25.69 E-value=1.9e+02 Score=18.61 Aligned_cols=33 Identities=15% Similarity=0.092 Sum_probs=23.5
Q ss_pred cchhhhhHHHHHHHHHHHHhhhhhhhhccCCccc
Q 025701 51 QTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTP 84 (249)
Q Consensus 51 ~~~~~~~~~s~~i~~~~y~~~g~~GY~~fG~~~~ 84 (249)
..++-++..+. +..++|++.|+.=+..+.++..
T Consensus 20 NsF~fViik~v-ismimylilGi~L~yis~~~~~ 52 (54)
T PF04835_consen 20 NSFWFVIIKSV-ISMIMYLILGIALIYISSNDDK 52 (54)
T ss_pred chHHHHHHHHH-HHHHHHHHHHHHHhhhccCccc
Confidence 56666666665 7888999999877766655543
No 90
>PF03134 TB2_DP1_HVA22: TB2/DP1, HVA22 family; InterPro: IPR004345 This family includes members from a wide variety of eukaryotes. It includes the TB2/DP1 (deleted in polyposis) protein which in human is deleted in severe forms of familial adenomatous polyposis, an autosomal dominant oncological inherited disease. The family also includes the plant protein of known similarity to TB2/DP1, the HVA22 abscisic acid-induced protein (e.g. Q07764 from SWISSPROT), which is thought to be a regulatory protein.
Probab=24.57 E-value=1.9e+02 Score=20.39 Aligned_cols=44 Identities=16% Similarity=0.364 Sum_probs=27.2
Q ss_pred HHHhhhhhhhhhhhhhhhhhhhhc-ccch-hhHHHHHHHHHHHHHHHH
Q 025701 186 GVIGGVIFWPLTIYFPVEMYFKQM-NIEA-WTRKWVMLRVFSYVCFIV 231 (249)
Q Consensus 186 ~l~Ga~~~~~l~filP~l~~l~~~-~~~~-~~~~~~~~~~~~~~g~~~ 231 (249)
++.+.+.+..++++.|...-++.- +++. ...+|...|. +.|+..
T Consensus 2 ~~~~~~l~~~i~~~yP~~~s~kal~~~~~~~~~~wL~YWi--v~~~~~ 47 (94)
T PF03134_consen 2 GFIARLLCNLIGILYPAYKSFKALKSKDKKDLKQWLTYWI--VYGLFT 47 (94)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH--HHHHHH
Confidence 456777888999999998877743 3222 2335555663 344443
No 91
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=23.59 E-value=5.6e+02 Score=23.24 Aligned_cols=25 Identities=8% Similarity=0.158 Sum_probs=15.9
Q ss_pred CchhHHHHHhhhCCCCccccchhhhhHHH
Q 025701 32 YSLILIEIQDTLKSPPPANQTMKKASTMS 60 (249)
Q Consensus 32 ~h~~~~~I~~~m~~p~~~~~~~~~~~~~s 60 (249)
+...+.++-++|+++ ++-.+....+
T Consensus 194 ~~avLv~lg~~~~~~----~~~~~g~l~g 218 (349)
T COG3949 194 AVAVLVPLGGRMESR----KVSGIGGLIG 218 (349)
T ss_pred HhHhhhhhccccccc----chhhhhhhhh
Confidence 456667787999986 5544544443
No 92
>PRK04949 putative sulfate transport protein CysZ; Validated
Probab=23.58 E-value=4.7e+02 Score=22.39 Aligned_cols=47 Identities=4% Similarity=0.108 Sum_probs=30.1
Q ss_pred HhhhCCCCccccchhhhhHHHHHHHHHHHHhhhhhhhhccCCccccccccccc
Q 025701 40 QDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFG 92 (249)
Q Consensus 40 ~~~m~~p~~~~~~~~~~~~~s~~i~~~~y~~~g~~GY~~fG~~~~~~il~~~~ 92 (249)
.+.+++| ++++.+.....+..++|...-..++-.+++.. +.++..++
T Consensus 18 ~~~l~~P-----~lr~~~liPl~inllLf~~~l~~~~~~~~~~l-~~l~~~~p 64 (251)
T PRK04949 18 WKLILQP-----GLRRFVILPLLVNILLFGGAFWWLFTQLDAWI-DWLMSQLP 64 (251)
T ss_pred HHHhcCc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCc
Confidence 3456665 88898999988888888776444444444322 44545554
No 93
>TIGR02711 symport_actP cation/acetate symporter ActP. Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.
Probab=23.43 E-value=6.6e+02 Score=24.05 Aligned_cols=27 Identities=15% Similarity=0.151 Sum_probs=17.1
Q ss_pred cccchhhhhHHHHHHHHHHHHhhhhhh
Q 025701 49 ANQTMKKASTMSIITTTIFYLFCGGFG 75 (249)
Q Consensus 49 ~~~~~~~~~~~s~~i~~~~y~~~g~~G 75 (249)
+.++.+|...++......+|+..-+.|
T Consensus 289 s~k~ar~s~~~~~~~~~~~~~~~~~~G 315 (549)
T TIGR02711 289 DAKEARKSVFYATGFMGYFYILTFIIG 315 (549)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 458888888877666656665444444
No 94
>PF02417 Chromate_transp: Chromate transporter; InterPro: IPR003370 This entry represents chromate transporters (CHR) [, ]. These proteins reduce chromate accumulation and are essential for chromate resistance. They are composed of one or two copies of this region. The short-chain CHR proteins form heterodimer transporters which efflux chromate ions from the cytoplasm, while the long chain CHR proteins appear to have arisen from a gene fusion event of two short chain transporters[].; GO: 0015109 chromate transmembrane transporter activity, 0015703 chromate transport
Probab=23.33 E-value=1.1e+02 Score=24.27 Aligned_cols=57 Identities=11% Similarity=0.050 Sum_probs=34.9
Q ss_pred HHHHHHHHccC-chhHHHHHhhhCCCC--ccccchhhhhHHHHHHHHHHHH-hhhhhhhhc
Q 025701 22 ALGDIAFAYPY-SLILIEIQDTLKSPP--PANQTMKKASTMSIITTTIFYL-FCGGFGYAA 78 (249)
Q Consensus 22 ~~gi~~faf~~-h~~~~~I~~~m~~p~--~~~~~~~~~~~~s~~i~~~~y~-~~g~~GY~~ 78 (249)
.+-+=.++|++ +..++-+++|+-+.. =++++|...+..+.......-. .....||..
T Consensus 9 f~~ig~~~FGGg~a~i~~~~~~~V~~~~wlt~~~f~~~~al~q~~PGP~~~n~a~~iG~~~ 69 (169)
T PF02417_consen 9 FFKIGLFSFGGGYAIIPLIQREFVERRGWLTEEEFLEGLALAQALPGPIAINLATFIGYRL 69 (169)
T ss_pred HHHHHHhhcCCHHHHHHHHHHHHhHccCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 44556778888 777888999987531 1235666666666655444444 555556643
No 95
>PF07125 DUF1378: Protein of unknown function (DUF1378); InterPro: IPR009808 This entry is represented by Bacteriophage 933W, Orf25. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of hypothetical bacterial and phage proteins of around 59 residues in length. Bacterial members of this family seem to be specific to Enterobacteria. The function of this family is unknown.
Probab=23.00 E-value=2.2e+02 Score=18.43 Aligned_cols=28 Identities=18% Similarity=0.224 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025701 218 WVMLRVFSYVCFIVSTFGLVGSIQGIIS 245 (249)
Q Consensus 218 ~~~~~~~~~~g~~~~v~g~~~si~~ii~ 245 (249)
..+.+++.+++.+-.+.|.|-+|++-++
T Consensus 6 ~~lLyFctvVcaLYLvsGGyk~IRnY~r 33 (59)
T PF07125_consen 6 TILLYFCTVVCALYLVSGGYKVIRNYFR 33 (59)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 3556677788888889999999988776
No 96
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=20.94 E-value=2.8e+02 Score=20.29 Aligned_cols=16 Identities=6% Similarity=0.077 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 025701 223 VFSYVCFIVSTFGLVG 238 (249)
Q Consensus 223 ~~~~~g~~~~v~g~~~ 238 (249)
.++++|++.++...|-
T Consensus 79 ~~lllGv~~G~~n~w~ 94 (100)
T TIGR02230 79 TMLIVGVVIGCLNAWH 94 (100)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4556777666665543
No 97
>cd08762 Cyt_b561_CYBASC3 Vertebrate cytochrome b(561), CYBASC3 gene product. Cytochrome b ascorbate-dependent 3, as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=20.92 E-value=3.2e+02 Score=22.26 Aligned_cols=68 Identities=12% Similarity=0.110 Sum_probs=45.2
Q ss_pred cchhhhhHHHHHHHHHHHHhhhhhhhhccCCcccccccccccCCCchHHHHHHHHHHHHHHHhhhhccccch
Q 025701 51 QTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPI 122 (249)
Q Consensus 51 ~~~~~~~~~s~~i~~~~y~~~g~~GY~~fG~~~~~~il~~~~~~~~~~~~~i~~i~~~i~~~~s~pl~~~p~ 122 (249)
++.+|.+....=....+..++|+..-..|.|+. .+-+.++ =++|+....-.++.++-+..+..+..|.
T Consensus 67 k~~~K~~H~~L~~~Al~~~vvGl~avf~~hn~~--~~~nlyS--lHSWlGl~t~~Lf~lQ~~~Gf~~f~~p~ 134 (179)
T cd08762 67 KLPWKLLHAGLLLLAFILTVIGLCAVFNFHNVH--HTANLYS--LHSWVGICTVALFTCQWVMGFTSFLLPW 134 (179)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--Cccchhh--HHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 666788888887788888888885555554443 3433333 1468766666777778887777766664
No 98
>smart00665 B561 Cytochrome b-561 / ferric reductase transmembrane domain. Cytochrome b-561 recycles ascorbate for the generation of norepinephrine by dopamine-beta-hydroxylase in the chromaffin vesicles of the adrenal gland. It is a transmembrane heme protein with the two heme groups being bound to conserved histidine residues. A cytochrome b-561 homologue, termed Dcytb, is an iron-regulated ferric reductase in the duodenal mucosa. Other homologues of these are also likely to be ferric reductases. SDR2 is proposed to be important in regulating the metabolism of iron in the onset of neurodegenerative disorders.
Probab=20.53 E-value=3.7e+02 Score=20.03 Aligned_cols=25 Identities=12% Similarity=0.406 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 025701 218 WVMLRVFSYVCFIVSTFGLVGSIQG 242 (249)
Q Consensus 218 ~~~~~~~~~~g~~~~v~g~~~si~~ 242 (249)
+..++.+-.++++..++|......+
T Consensus 34 ~~~H~~lq~~a~~~~~~g~~~~~~~ 58 (129)
T smart00665 34 FLLHVVLQILALVLGVIGLLAIFIS 58 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556677777777777777766655
No 99
>PLN02810 carbon-monoxide oxygenase
Probab=20.33 E-value=5.4e+02 Score=21.89 Aligned_cols=69 Identities=13% Similarity=0.073 Sum_probs=44.9
Q ss_pred cchhhhhHHHHHHHHHHHHhhhhhhhhccCCcccccccccccCCCchHHHHHHHHHHHHHHHhhhhccccchH
Q 025701 51 QTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIF 123 (249)
Q Consensus 51 ~~~~~~~~~s~~i~~~~y~~~g~~GY~~fG~~~~~~il~~~~~~~~~~~~~i~~i~~~i~~~~s~pl~~~p~~ 123 (249)
++.+|.+....=...++..++|+..-..|.++. .+ .|+-+ =++|+....-.++.++-+..+-.+.+|..
T Consensus 76 k~~~K~iH~~lh~~Al~l~vvGl~Avf~~Hn~~--~i-~nlyS-LHSWlGl~tv~Lf~lQw~~Gf~~Fl~P~~ 144 (231)
T PLN02810 76 KEVKKLIHLVLHAIALILGIFGICAAFKNHNES--GI-ANLYS-LHSWLGIGIISLYGIQWIYGFIVFFFPGG 144 (231)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--CC-Cceee-HHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 677888888887888888888885555554443 33 33322 14687666666677777777766655543
Done!