Query 025701
Match_columns 249
No_of_seqs 115 out of 1091
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 15:43:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025701.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025701hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l1l_A Arginine/agmatine antip 98.3 4E-06 1.4E-10 75.7 12.3 64 15-81 189-252 (445)
2 3gia_A Uncharacterized protein 98.1 6E-05 2.1E-09 67.9 14.4 66 12-80 183-248 (444)
3 4djk_A Probable glutamate/gamm 97.9 0.00027 9.2E-09 64.8 14.3 60 20-82 204-263 (511)
4 2jln_A MHP1; hydantoin, transp 42.3 70 0.0024 28.9 7.6 15 32-46 223-237 (501)
5 3dh4_A Sodium/glucose cotransp 36.8 2.4E+02 0.0081 25.5 11.2 39 39-79 242-283 (530)
6 2xq2_A Sodium/glucose cotransp 30.3 2.2E+02 0.0077 26.1 9.1 38 39-78 271-311 (593)
7 4b4a_A TATC, SEC-independent p 20.3 3.5E+02 0.012 21.9 11.8 30 180-209 145-175 (249)
8 3tx3_A Uncharacterized protein 14.0 5E+02 0.017 20.9 10.1 35 41-80 22-56 (249)
9 3mp7_B Preprotein translocase 12.2 2.2E+02 0.0074 17.9 3.2 31 41-77 20-50 (61)
10 4b4a_A TATC, SEC-independent p 11.3 6.1E+02 0.021 20.4 7.8 17 163-179 188-204 (249)
No 1
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=98.34 E-value=4e-06 Score=75.72 Aligned_cols=64 Identities=8% Similarity=0.105 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHHccCchhHHHHHhhhCCCCccccchhhhhHHHHHHHHHHHHhhhhhhhhccCC
Q 025701 15 KMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGD 81 (249)
Q Consensus 15 ~~~~~~~~~gi~~faf~~h~~~~~I~~~m~~p~~~~~~~~~~~~~s~~i~~~~y~~~g~~GY~~fG~ 81 (249)
+..+++.++....|+|.+........+|+||| +++.+|++..+..++.++|......-....+.
T Consensus 189 ~~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p---~r~ip~a~~~~~~~~~~~y~~~~~~~~~~~~~ 252 (445)
T 3l1l_A 189 TFGAIQSTLNVTLWSFIGVESASVAAGVVKNP---KRNVPIATIGGVLIAAVCYVLSTTAIMGMIPN 252 (445)
T ss_dssp ----HHHHHHHHHHTTTTTTHHHHGGGGBSSH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCT
T ss_pred cHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCc---cccccHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence 36678889999999999999999999999998 58899999999999999999887766655554
No 2
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=98.09 E-value=6e-05 Score=67.94 Aligned_cols=66 Identities=11% Similarity=0.094 Sum_probs=55.6
Q ss_pred hhhHHHHHHHHHHHHHHHccCchhHHHHHhhhCCCCccccchhhhhHHHHHHHHHHHHhhhhhhhhccC
Q 025701 12 SIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFG 80 (249)
Q Consensus 12 ~~~~~~~~~~~~gi~~faf~~h~~~~~I~~~m~~p~~~~~~~~~~~~~s~~i~~~~y~~~g~~GY~~fG 80 (249)
.+.++.+++.++....|+|.+........+|+||| +++.+|++..+..++.++|....+.-....+
T Consensus 183 ~~~g~~~~~~~~~~~~~a~~G~e~~~~~~~e~k~P---~r~ip~ai~~~~~~~~~~y~~~~~~~~~~~~ 248 (444)
T 3gia_A 183 APSAVSGMIFASAIFFLSYMGFGVITNASEHIENP---KKNVPRAIFISILIVMFVYVGVAISAIGNLP 248 (444)
T ss_dssp SHHHHHHHHHHHHHGGGGGTHHHHHHTTGGGBSSH---HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred CCcchHHHHHHHHHHHHHHHhHHHHHHHHHHccCc---ccchhHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 34456678889999999999999999999999998 4779999999999999999987766554444
No 3
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=97.85 E-value=0.00027 Score=64.84 Aligned_cols=60 Identities=8% Similarity=-0.005 Sum_probs=51.3
Q ss_pred HHHHHHHHHHccCchhHHHHHhhhCCCCccccchhhhhHHHHHHHHHHHHhhhhhhhhccCCc
Q 025701 20 AQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDN 82 (249)
Q Consensus 20 ~~~~gi~~faf~~h~~~~~I~~~m~~p~~~~~~~~~~~~~s~~i~~~~y~~~g~~GY~~fG~~ 82 (249)
+.++....|+|.+........+|+||| +++.+|++..+..++.++|+...+.-....+++
T Consensus 204 ~~~~~~~~~a~~G~e~~~~~a~E~k~P---~k~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~ 263 (511)
T 4djk_A 204 LVVFVAFILSYMGVEASATHVNEMSNP---GRDYPLAMLLLMVAAICLSSVGGLSIAMVIPGN 263 (511)
T ss_dssp TTTHHHHHHHHTTGGGGTGGGSSSSCC---TTTHHHHHHHHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHhccCc---ccchhHHHHHHHHHHHHHHHHHHHHHHeecCHh
Confidence 345777899999999999999999998 488999999999999999998877666655543
No 4
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=42.29 E-value=70 Score=28.87 Aligned_cols=15 Identities=13% Similarity=0.093 Sum_probs=11.4
Q ss_pred CchhHHHHHhhhCCC
Q 025701 32 YSLILIEIQDTLKSP 46 (249)
Q Consensus 32 ~h~~~~~I~~~m~~p 46 (249)
...+.++..+.+|++
T Consensus 223 ~~~~~~DysRy~~~~ 237 (501)
T 2jln_A 223 VVVSIHDIVKECKVD 237 (501)
T ss_dssp HHTTTHHHHTTBCCC
T ss_pred HHhccCcccccCCCC
Confidence 336678888999876
No 5
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=36.80 E-value=2.4e+02 Score=25.46 Aligned_cols=39 Identities=21% Similarity=0.190 Sum_probs=20.6
Q ss_pred HHhhhCCCCccccchhhhhHHHHHHHHHHH---Hhhhhhhhhcc
Q 025701 39 IQDTLKSPPPANQTMKKASTMSIITTTIFY---LFCGGFGYAAF 79 (249)
Q Consensus 39 I~~~m~~p~~~~~~~~~~~~~s~~i~~~~y---~~~g~~GY~~f 79 (249)
+|+-|.-+ +.++.+|....+......+. ...|+.++..|
T Consensus 242 ~qR~laak--s~k~ar~~~~~~~~~~~~~~~~~~~~Gl~a~~~~ 283 (530)
T 3dh4_A 242 IQRTLAAK--SVSEAQKGIVFAAFLKLIVPFLVVLPGIAAYVIT 283 (530)
T ss_dssp HHHHHSSS--CHHHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHH
T ss_pred HHHHHHcC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555543 33667776665554433333 34566666656
No 6
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=30.33 E-value=2.2e+02 Score=26.06 Aligned_cols=38 Identities=21% Similarity=0.236 Sum_probs=20.3
Q ss_pred HHhhhCCCCccccchhhhhHHHHHHHHHH---HHhhhhhhhhc
Q 025701 39 IQDTLKSPPPANQTMKKASTMSIITTTIF---YLFCGGFGYAA 78 (249)
Q Consensus 39 I~~~m~~p~~~~~~~~~~~~~s~~i~~~~---y~~~g~~GY~~ 78 (249)
+|+-|..+ +.++-+|....+......+ ....|+.++..
T Consensus 271 ~qR~laak--s~k~ar~~~~~~~~~~~~~~~~~~~~Gl~a~~~ 311 (593)
T 2xq2_A 271 IQRTLAAK--SVSEAQKGIVFAAFLALIVPFLVVLPGIAAYVI 311 (593)
T ss_dssp HHHHHTTS--CHHHHHHHHHHHHHHTTTHHHHHTHHHHHHHHH
T ss_pred HHHhheeC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555543 3477777766655443333 33456666654
No 7
>4b4a_A TATC, SEC-independent protein translocase protein TATC; transport protein, TAT secretion system, protein translocati; HET: LMN; 3.50A {Aquifex aeolicus}
Probab=20.27 E-value=3.5e+02 Score=21.93 Aligned_cols=30 Identities=10% Similarity=0.288 Sum_probs=21.6
Q ss_pred ChHHHHHHHhhhh-hhhhhhhhhhhhhhhhc
Q 025701 180 YFNQVLGVIGGVI-FWPLTIYFPVEMYFKQM 209 (249)
Q Consensus 180 ~~~~vl~l~Ga~~-~~~l~filP~l~~l~~~ 209 (249)
++++.++++=.+. +.-++|-+|.++.+..+
T Consensus 145 ~i~~Yl~fv~~l~l~fGl~FelPvi~~~L~~ 175 (249)
T 4b4a_A 145 SVDMYISFVLKLVVAFGIAFEMPIVLYVLQK 175 (249)
T ss_dssp EHHHHHHHHHHHHHHHHHHTSHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777777766653 44588999999888654
No 8
>3tx3_A Uncharacterized protein involved in cysteine BIOS; structural genomics, PSI-biology, NEW YORK consortium on MEM protein structure, nycomps; HET: LDA; 2.30A {Idiomarina loihiensis}
Probab=14.03 E-value=5e+02 Score=20.94 Aligned_cols=35 Identities=11% Similarity=0.336 Sum_probs=22.8
Q ss_pred hhhCCCCccccchhhhhHHHHHHHHHHHHhhhhhhhhccC
Q 025701 41 DTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFG 80 (249)
Q Consensus 41 ~~m~~p~~~~~~~~~~~~~s~~i~~~~y~~~g~~GY~~fG 80 (249)
+.+.+| ++++.+.....+..++|.......+...+
T Consensus 22 ~~i~~p-----~lr~~vl~Pllinl~L~~~~~~~~~~~~~ 56 (249)
T 3tx3_A 22 ELIRTK-----GLRRYVVVPILTNLILFSLAFTWLYGEVD 56 (249)
T ss_dssp HHHTST-----TTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCc-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345654 78888888888888887655444333333
No 9
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=12.18 E-value=2.2e+02 Score=17.89 Aligned_cols=31 Identities=23% Similarity=0.236 Sum_probs=18.0
Q ss_pred hhhCCCCccccchhhhhHHHHHHHHHHHHhhhhhhhh
Q 025701 41 DTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYA 77 (249)
Q Consensus 41 ~~m~~p~~~~~~~~~~~~~s~~i~~~~y~~~g~~GY~ 77 (249)
+-=++| +++.|.++...+. +-..++|..||.
T Consensus 20 k~~~KP--d~~Ef~~iak~~~----iG~~i~G~iGf~ 50 (61)
T 3mp7_B 20 LVTKKP--NWATYKRAAKITG----LGIILIGLIGML 50 (61)
T ss_dssp HHSCCC--CTTHHHHHHHHHH----HHHHHHHHHHHH
T ss_pred HHhcCC--CHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 334566 8888888766543 233445555554
No 10
>4b4a_A TATC, SEC-independent protein translocase protein TATC; transport protein, TAT secretion system, protein translocati; HET: LMN; 3.50A {Aquifex aeolicus}
Probab=11.26 E-value=6.1e+02 Score=20.41 Aligned_cols=17 Identities=18% Similarity=0.155 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHhCC
Q 025701 163 FRTVYVVSVTAIAMSFP 179 (249)
Q Consensus 163 ~r~~~~~~~~~iAi~vP 179 (249)
-|.+++....+-|+.-|
T Consensus 188 Rr~~iv~~~v~aAiiTP 204 (249)
T 4b4a_A 188 RKYFIVIAFVIGAIIAP 204 (249)
T ss_dssp HHHHHHHHHHHHHHHCS
T ss_pred hHHHHHHHHHHHHHHCC
Confidence 35566666555677779
Done!