Query 025701
Match_columns 249
No_of_seqs 115 out of 1091
Neff 8.2
Searched_HMMs 13730
Date Mon Mar 25 15:43:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025701.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/025701hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rh5b_ f.23.28.1 (B:) Preprot 9.9 1.2E+02 0.0086 17.4 2.8 30 43-78 15-44 (56)
2 d1v54d_ f.23.1.1 (D:) Mitochon 4.8 4.4E+02 0.032 17.7 4.4 19 39-60 64-82 (144)
3 d3cx5c1 f.32.1.1 (C:262-385) M 4.6 4.5E+02 0.033 16.9 5.0 15 177-191 23-38 (124)
4 d1ciya3 f.1.3.1 (A:33-255) del 4.5 3.1E+02 0.022 19.7 3.6 26 166-191 7-32 (223)
5 d1r3jc_ f.14.1.1 (C:) Potassiu 4.4 4.1E+02 0.03 16.1 4.9 13 104-116 68-80 (103)
6 d1iwga8 f.35.1.1 (A:513-566,A: 3.9 4.1E+02 0.03 18.7 3.9 15 198-212 206-220 (222)
7 d2h8pc1 f.14.1.1 (C:22-78) Pot 3.8 3.8E+02 0.028 14.9 3.4 37 55-92 6-42 (57)
8 d1ppjc1 f.32.1.1 (C:261-379) M 3.8 5.4E+02 0.039 16.5 4.9 15 177-191 23-38 (119)
9 d1y5ic1 f.21.3.1 (C:1-225) Res 3.4 7E+02 0.051 17.4 4.9 8 186-193 91-98 (225)
10 d2pila_ d.24.1.1 (A:) Pilin Gc 3.2 2.8E+02 0.021 17.4 2.1 24 163-186 6-29 (158)
No 1
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=9.90 E-value=1.2e+02 Score=17.37 Aligned_cols=30 Identities=20% Similarity=0.341 Sum_probs=17.2
Q ss_pred hCCCCccccchhhhhHHHHHHHHHHHHhhhhhhhhc
Q 025701 43 LKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAA 78 (249)
Q Consensus 43 m~~p~~~~~~~~~~~~~s~~i~~~~y~~~g~~GY~~ 78 (249)
-++| +++.|.++...+ .+=.+++|+.||.-
T Consensus 15 ~~KP--~~~Ef~~ia~v~----~iG~~i~G~IGf~I 44 (56)
T d1rh5b_ 15 LKKP--TKDEYLAVAKVT----ALGISLLGIIGYII 44 (56)
T ss_dssp EECC--CHHHHHHHHHHH----HHHHHHHHHHHHHH
T ss_pred hcCC--CHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 3455 788888765543 23344556666643
No 2
>d1v54d_ f.23.1.1 (D:) Mitochondrial cytochrome c oxidase subunit IV {Cow (Bos taurus) [TaxId: 9913]}
Probab=4.83 E-value=4.4e+02 Score=17.73 Aligned_cols=19 Identities=5% Similarity=0.010 Sum_probs=11.8
Q ss_pred HHhhhCCCCccccchhhhhHHH
Q 025701 39 IQDTLKSPPPANQTMKKASTMS 60 (249)
Q Consensus 39 I~~~m~~p~~~~~~~~~~~~~s 60 (249)
-+.||..|+ ..+++++...
T Consensus 64 t~ae~~~p~---gewK~v~g~~ 82 (144)
T d1v54d_ 64 SFAEMNRST---NEWKTVVGAA 82 (144)
T ss_dssp CHHHHTCCC---SHHHHHHHHH
T ss_pred ccccccCCC---CchhHHHHHH
Confidence 356888873 5666665544
No 3
>d3cx5c1 f.32.1.1 (C:262-385) Mitochondrial cytochrome b subunit, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=4.64 E-value=4.5e+02 Score=16.93 Aligned_cols=15 Identities=20% Similarity=0.397 Sum_probs=7.2
Q ss_pred hCCC-hHHHHHHHhhh
Q 025701 177 SFPY-FNQVLGVIGGV 191 (249)
Q Consensus 177 ~vP~-~~~vl~l~Ga~ 191 (249)
.+|| ++-++.+++|+
T Consensus 23 siP~k~~Gvl~~~~si 38 (124)
T d3cx5c1 23 SIPDKLLGVITMFAAI 38 (124)
T ss_dssp TSSSHHHHHHHHHHHH
T ss_pred cCCcchhhhHHHHHHH
Confidence 4675 33444444444
No 4
>d1ciya3 f.1.3.1 (A:33-255) delta-Endotoxin (insectocide), N-terminal domain {Bacillus thuringiensis, CRYIA (A) [TaxId: 1428]}
Probab=4.53 E-value=3.1e+02 Score=19.68 Aligned_cols=26 Identities=15% Similarity=0.160 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHhhh
Q 025701 166 VYVVSVTAIAMSFPYFNQVLGVIGGV 191 (249)
Q Consensus 166 ~~~~~~~~iAi~vP~~~~vl~l~Ga~ 191 (249)
.+-++.++++.++|..|.++++++-+
T Consensus 7 ~~~~~~~ll~~~iP~~g~~~~li~~l 32 (223)
T d1ciya3 7 SLSLTQFLLSEFVPGAGFVLGLVDII 32 (223)
T ss_dssp HHHHHHHHHHCCSSSHHHHHHHHHHT
T ss_pred HHHHHHHHhhhcCCchHHHHHHHHHH
Confidence 34466677788899999888765443
No 5
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=4.43 E-value=4.1e+02 Score=16.10 Aligned_cols=13 Identities=23% Similarity=0.442 Sum_probs=4.8
Q ss_pred HHHHHHHHHhhhh
Q 025701 104 NAFIVIHLVGGYQ 116 (249)
Q Consensus 104 ~i~~~i~~~~s~p 116 (249)
++...+.++.+..
T Consensus 68 r~~~~~~~~~Gi~ 80 (103)
T d1r3jc_ 68 RCVAVVVMVAGIT 80 (103)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 6
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=3.87 E-value=4.1e+02 Score=18.72 Aligned_cols=15 Identities=13% Similarity=0.301 Sum_probs=9.8
Q ss_pred hhhhhhhhhhhcccc
Q 025701 198 IYFPVEMYFKQMNIE 212 (249)
Q Consensus 198 filP~l~~l~~~~~~ 212 (249)
+++|+++++..||.+
T Consensus 206 ~~~Pal~~l~~r~~~ 220 (222)
T d1iwga8 206 FFVPVFFVVVRRRFS 220 (222)
T ss_dssp SSSSSSHHHHHHHTS
T ss_pred HHHHHHHHHHHHhhc
Confidence 568888777655443
No 7
>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=3.84 E-value=3.8e+02 Score=14.87 Aligned_cols=37 Identities=19% Similarity=0.201 Sum_probs=19.9
Q ss_pred hhhHHHHHHHHHHHHhhhhhhhhccCCccccccccccc
Q 025701 55 KASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFG 92 (249)
Q Consensus 55 ~~~~~s~~i~~~~y~~~g~~GY~~fG~~~~~~il~~~~ 92 (249)
|.+..+..+..++-+..+..-|..=.+ .++.=..+++
T Consensus 6 R~~~~~~~~~~i~i~~~s~~~y~~E~~-~~~~~f~sip 42 (57)
T d2h8pc1 6 RAAGAATVLLVIVLLAGSYLAVLAERG-APGAQLITYP 42 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTT-STTCCCCSHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCccccccc
Confidence 444455555555555566666666433 3444466665
No 8
>d1ppjc1 f.32.1.1 (C:261-379) Mitochondrial cytochrome b subunit, C-terminal domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=3.75 E-value=5.4e+02 Score=16.45 Aligned_cols=15 Identities=27% Similarity=0.401 Sum_probs=7.6
Q ss_pred hCCC-hHHHHHHHhhh
Q 025701 177 SFPY-FNQVLGVIGGV 191 (249)
Q Consensus 177 ~vP~-~~~vl~l~Ga~ 191 (249)
.+|| ++-++.+++|+
T Consensus 23 sipnK~gGvl~m~~si 38 (119)
T d1ppjc1 23 SIPNKLGGVLALAFSI 38 (119)
T ss_dssp TCSSHHHHHHHHHHHH
T ss_pred cCCchhHHHHHHHHHH
Confidence 3675 44455554444
No 9
>d1y5ic1 f.21.3.1 (C:1-225) Respiratory nitrate reductase 1 gamma chain {Escherichia coli [TaxId: 562]}
Probab=3.39 E-value=7e+02 Score=17.37 Aligned_cols=8 Identities=25% Similarity=0.090 Sum_probs=3.5
Q ss_pred HHHhhhhh
Q 025701 186 GVIGGVIF 193 (249)
Q Consensus 186 ~l~Ga~~~ 193 (249)
...|.+++
T Consensus 91 ~~~g~i~g 98 (225)
T d1y5ic1 91 MFAGGASG 98 (225)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 34444444
No 10
>d2pila_ d.24.1.1 (A:) Pilin Gc {Neisseria gonorrhoeae [TaxId: 485]}
Probab=3.21 E-value=2.8e+02 Score=17.44 Aligned_cols=24 Identities=13% Similarity=0.224 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhCCChHHHHH
Q 025701 163 FRTVYVVSVTAIAMSFPYFNQVLG 186 (249)
Q Consensus 163 ~r~~~~~~~~~iAi~vP~~~~vl~ 186 (249)
+-+.+.++..+.|+.+|.+.....
T Consensus 6 LlVViaIIgILaaia~P~~~~~~~ 29 (158)
T d2pila_ 6 LMIVIAIVGILAAVALPAYQDYTA 29 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Done!