BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025702
(249 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SA52|CP41B_ARATH Chloroplast stem-loop binding protein of 41 kDa b, chloroplastic
OS=Arabidopsis thaliana GN=CSP41B PE=1 SV=1
Length = 378
Score = 443 bits (1140), Expect = e-124, Method: Compositional matrix adjust.
Identities = 205/236 (86%), Positives = 227/236 (96%)
Query: 1 MGGTRFIGVFLSRLLVKEGHQVTLFTRGKAPIAQQLPGESDQEFAEFSSKILHLKGDRKD 60
MGGTRFIG+FLSR+LVKEGHQVTLFTRGK+PIA+QLPGESDQ+FA+FSSKILHLKGDRKD
Sbjct: 59 MGGTRFIGLFLSRILVKEGHQVTLFTRGKSPIAKQLPGESDQDFADFSSKILHLKGDRKD 118
Query: 61 YDFVKSSLSAKGFDVVYDINGREADEVEPILDALPNLEQFIYCSSAGVYLKSDLLPHCET 120
YDFVKSSLSA+GFDVVYDINGREA+EVEPIL+ALP LEQ+IYCSSAGVYLKSD+LPHCE
Sbjct: 119 YDFVKSSLSAEGFDVVYDINGREAEEVEPILEALPKLEQYIYCSSAGVYLKSDILPHCEE 178
Query: 121 DTVDPKSRHKGKLNTESVLESKGVNWTSLRPVYIYGPLNYNPVEEWFFHRLKAGRPIPIP 180
D VDPKSRHKGKL TES+L+SKGVNWTS+RPVYIYGPLNYNPVEEWFFHRLKAGRPIP+P
Sbjct: 179 DAVDPKSRHKGKLETESLLQSKGVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPVP 238
Query: 181 GSGIQVTQLGHVKDLARAFVQVLGNEKASRQVFNISGEKYVTFDGLARACAKVTGY 236
SGIQ++QLGHVKDLA AF+ VLGNEKASR++FNISGEKYVTFDGLA+ACAK G+
Sbjct: 239 NSGIQISQLGHVKDLATAFLNVLGNEKASREIFNISGEKYVTFDGLAKACAKAGGF 294
>sp|Q9LYA9|CP41A_ARATH Chloroplast stem-loop binding protein of 41 kDa a, chloroplastic
OS=Arabidopsis thaliana GN=CSP41A PE=1 SV=1
Length = 406
Score = 142 bits (359), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 83/241 (34%), Positives = 128/241 (53%), Gaps = 11/241 (4%)
Query: 2 GGTRFIGVFLSRLLVKEGHQVTLFTRGKAPIAQQLPGESDQEFAEF-SSKILHLKGDRKD 60
GG IG + ++ L+ GH VT+ T G ++++ F+E S + G+ +
Sbjct: 90 GGHAVIGFYFAKELLSAGHAVTILTVGDES-SEKMKKPPFNRFSEIVSGGGKTVWGNPAN 148
Query: 61 YDFVKSSLSAKGFDVVYDINGREADEVEPILDALPN--LEQFIYCSSAGVYLKSDLLPHC 118
V + + + FDVV D NG++ D V P++D + ++QF++ SSAG+Y ++ PH
Sbjct: 149 ---VANVVGGETFDVVLDNNGKDLDTVRPVVDWAKSSGVKQFLFISSAGIYKSTEQPPHV 205
Query: 119 ETDTVDPKSRHKGKLNTESVLESKGVNWTSLRPVYIYGPLNYNPVEEWFFHRLKAGRPIP 178
E D V + H + E L NW S RP Y+ G N EEWFF R+ R +P
Sbjct: 206 EGDAVKADAGH---VVVEKYLAETFGNWASFRPQYMIGSGNNKDCEEWFFDRIVRDRAVP 262
Query: 179 IPGSGIQVTQLGHVKDLARAFVQVLGN-EKASRQVFNISGEKYVTFDGLARACAKVTGYC 237
IPGSG+Q+T + HV+DL+ + N E AS +FN ++ VT DG+A+ CA G
Sbjct: 263 IPGSGLQLTNISHVRDLSSMLTSAVANPEAASGNIFNCVSDRAVTLDGMAKLCAAAAGKT 322
Query: 238 I 238
+
Sbjct: 323 V 323
>sp|Q45291|GALE_CORGL UDP-glucose 4-epimerase OS=Corynebacterium glutamicum (strain ATCC
13032 / DSM 20300 / JCM 1318 / LMG 3730 / NCIMB 10025)
GN=galE PE=3 SV=2
Length = 329
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 73/289 (25%), Positives = 116/289 (40%), Gaps = 56/289 (19%)
Query: 2 GGTRFIGVFLSRLLVKEGHQVTLFTRGKAPIAQQLPGESDQEFAEFSSKILHLKGDRKDY 61
GG ++G + +L++ GH VT+ + +P ++ ++GD D
Sbjct: 7 GGAGYVGSVAAAVLLEHGHDVTIIDNFSTGNREAVPADARL-----------IEGDVND- 54
Query: 62 DFVKSSLSAKGFDVVYDINGRE--ADEVE--------------PILDAL--PNLEQFIYC 103
V+ LS GF+ V R + VE +LDA+ + ++
Sbjct: 55 -VVEEVLSEGGFEGVVHFAARSLVGESVEKPNEYWHDNVVTALTLLDAMRAHGVNNLVFS 113
Query: 104 SSAGVYLKSDLLPHCETDTVDPKSRHKG-KLNTESVLESK----GVNWTSLRPVYI---Y 155
S+A Y + D++P E P + + KL+ + + S G+ TSLR + Y
Sbjct: 114 STAATYGEPDVVPITEDMPTQPTNAYGATKLSIDYAITSYAAAFGLAATSLRYFNVAGAY 173
Query: 156 GPLNYNPVEEWFF----------HRLKA---GRPIPIPGSGIQVTQLGHVKDLARAFVQV 202
G + N E HR K G P P G V H+ DLA+A V
Sbjct: 174 GNIGENREVETHLIPLVLQVATGHREKTFMFGDDWPTP-DGTAVRDYIHILDLAKAHVLA 232
Query: 203 L-GNEKASRQVFNI-SGEKYVTFDGLARACAKVTGYCIAGSVEHRMPDD 249
L NE ++FN+ SG+ Y + + C +VTG+ I V R D
Sbjct: 233 LESNEAGKHRIFNLGSGDGY-SVKQVVEMCREVTGHPIPAEVAPRRAGD 280
>sp|P33119|GALE_CORDI UDP-glucose 4-epimerase OS=Corynebacterium diphtheriae (strain ATCC
700971 / NCTC 13129 / Biotype gravis) GN=galE PE=3 SV=2
Length = 328
Score = 47.4 bits (111), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 73/295 (24%), Positives = 115/295 (38%), Gaps = 68/295 (23%)
Query: 2 GGTRFIGVFLSRLLVKEGHQVTLF------TRGKAPIAQQLPGESDQEFAEFSSKILHLK 55
GG ++G S +L+++GH+VT+ R P+ ++
Sbjct: 7 GGAGYVGSVCSTVLLEQGHEVTIVDNLTTGNRDAVPLGATF-----------------VE 49
Query: 56 GDRKDYDFVKSSLSAKGFDVVYDINGRE--ADEVE--------------PILDALP--NL 97
GD K D + LS+ FD V R + VE +LDA+ N+
Sbjct: 50 GDIK--DVADNVLSSDSFDAVLHFAARSLVGESVEKPDEYWQHNMVTTLALLDAMKRNNV 107
Query: 98 EQFIYCSSAGVYLKSDLLPHCETDTVDPKSRHKG-KLNTESVLES----KGVNWTSLRPV 152
++ S+A Y + + +P E P + + KL+ + + S G TSLR
Sbjct: 108 RNIVFSSTAATYGEPETVPITEDAPTHPTNPYGATKLSIDYAITSYAHAYGFAATSLRYF 167
Query: 153 YI---YGPLNYNPVEEWFF----------HRLKA---GRPIPIPGSGIQVTQLGHVKDLA 196
+ YG + N E HR K G P G + H++DLA
Sbjct: 168 NVAGAYGLVGENREIETHLIPLVLQVALGHRDKIFMFGDDWPTE-DGTPIRDYIHIRDLA 226
Query: 197 RAFVQVL-GNEKASRQVFNI-SGEKYVTFDGLARACAKVTGYCIAGSVEHRMPDD 249
A + L N + S ++FN+ SGE Y + + C +VTG+ I V R D
Sbjct: 227 DAHILALQSNVEGSHRIFNLGSGEGY-SVKQVIDTCREVTGHLIPAEVAPRRAGD 280
>sp|P55579|Y4NG_RHISN Uncharacterized protein y4nG OS=Rhizobium sp. (strain NGR234)
GN=NGR_a02350 PE=4 SV=1
Length = 396
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 56/245 (22%), Positives = 97/245 (39%), Gaps = 27/245 (11%)
Query: 2 GGTRFIGVFLSRLLVKEGHQVTLFTRGKAPIAQQLPGESDQEFAEFSSKILH-------L 54
GG+ + G LS+ L+++G V +F PG S IL L
Sbjct: 56 GGSGYFGELLSKQLLRQGTYVRVFDLNP-------PGFSHPNLEFLKGTILDRNAVRQAL 108
Query: 55 KGDRKDYDFVKSSLSAKGFDVVYDINGREADEVEPILD--ALPNLEQFIYCSSAGVYLKS 112
G K + V AK D+ + +N + I+D +E+F+Y SS+ V+
Sbjct: 109 SGIDKVFHNVAQVPLAKEKDLFWSVN---CGGTQIIVDESVATGIEKFVYTSSSAVFGAP 165
Query: 113 DLLPHCETDTVDP-----KSRHKGKLNTESVLESKGVNWTSLRPVYIYGPLNYNPVEEWF 167
P E +P +++ G++ + ++ G++ +RP + G V +
Sbjct: 166 KSNPVTEETEPNPAEDYGRAKLAGEIICKEAMQRDGLDVAIVRPRTVLG-YGRQGVVQIL 224
Query: 168 FHRLKAGRPIPIPGSGIQVTQLGHVKDLARAFVQVLGNEKASRQVFNISGEKYVTFDGLA 227
F ++ G IP+ G G Q H DLA A + + +NI ++ T L
Sbjct: 225 FDWVERGLDIPVLGGGNNKYQFVHSDDLASACIAA--SNVKGFATYNIGAAEFGTMRELL 282
Query: 228 RACAK 232
+ K
Sbjct: 283 QVVIK 287
>sp|P52577|IFRH_ARATH Isoflavone reductase homolog P3 OS=Arabidopsis thaliana
GN=At1g75280 PE=1 SV=1
Length = 310
Score = 44.3 bits (103), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 67/149 (44%), Gaps = 12/149 (8%)
Query: 1 MGGTRFIGVFLSRLLVKEGHQVTLFTRGKAPIAQQLPGESDQEFAEFSSKILHLKGDRKD 60
+GGT +IG FL K GH R +A ++ + G++ Q F + ILH GD D
Sbjct: 11 IGGTGYIGKFLVEASAKAGHSTFALVR-EATLSDPVKGKTVQSFKDLGVTILH--GDLND 67
Query: 61 YDFVKSSLSAKGFDVVYDINGREADEVEPILDALPNLEQFIYCSSAGVYLKSDLLPHCE- 119
++ + ++ K DVV G ILD + + +L S+ +
Sbjct: 68 HESLVKAI--KQVDVVISTVGSMQ-----ILDQTKIISAIKEAGNVKRFLPSEFGVDVDR 120
Query: 120 TDTVDP-KSRHKGKLNTESVLESKGVNWT 147
T V+P KS GK+ +E++G+ +T
Sbjct: 121 TSAVEPAKSAFAGKIQIRRTIEAEGIPYT 149
>sp|P39630|RMLB_BACSU dTDP-glucose 4,6-dehydratase OS=Bacillus subtilis (strain 168)
GN=rfbB PE=1 SV=1
Length = 315
Score = 40.0 bits (92), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 62/270 (22%), Positives = 103/270 (38%), Gaps = 52/270 (19%)
Query: 2 GGTRFIGVFLSRLLVKEGHQVTLFTRGKAPIAQQLPGESDQEFAEFSSKILHLKGDRKDY 61
GG FIG+ ++L+++E T + + +L +A ++ LK + + +
Sbjct: 9 GGAGFIGLTFTKLMLRE-------TDARITVLDKLT------YASHPEEMEKLKQNSR-F 54
Query: 62 DFVKSSLSA-----KGFDVVYD--IN-------GREADEVEPILDA-------------L 94
FVK +S + FD YD I+ R + EP +
Sbjct: 55 RFVKGDISVQEDIDRAFDETYDGVIHFAAESHVDRSISQAEPFITTNVMGTYRLAEAVLK 114
Query: 95 PNLEQFIYCSSAGVY--LKSDLLPHCETDTVDPKSRHKGKLNTESVLESKGVNWTSLRPV 152
++ I+ S+ VY LK+D ET + P + + + +L V L +
Sbjct: 115 GKAKKLIHISTDEVYGDLKADDPAFTETTPLSPNNPYSASKASSDLLVLSYVKTHKLPAI 174
Query: 153 YIYGPLNYNPVEE------WFFHRLKAGRPIPIPGSGIQVTQLGHVKDLARAFVQVLGNE 206
NY P + K G P+P+ G G+Q+ +D RA +L E
Sbjct: 175 ITRCSNNYGPYQHSEKMIPTIIRHAKQGLPVPLYGDGLQIRDWLFAEDHCRAIKLIL--E 232
Query: 207 KASR-QVFNISGEKYVTFDGLARACAKVTG 235
K + +V+NI G T LA K G
Sbjct: 233 KGTDGEVYNIGGGNERTNKELASVILKHLG 262
>sp|P32055|FCL_ECOLI GDP-L-fucose synthase OS=Escherichia coli (strain K12) GN=fcl PE=1
SV=2
Length = 321
Score = 38.1 bits (87), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 57/250 (22%), Positives = 95/250 (38%), Gaps = 43/250 (17%)
Query: 30 APIAQQLPGESDQEFAEFSSKILHLKGDRKDYDFVKSSLSAKGFDVVYDINGREADEVEP 89
+ I +QL D E + L+L R +DF S + + + G A+ P
Sbjct: 17 SAIRRQLEQRGDVELVLRTRDELNLLDSRAVHDFFASERIDQVYLAAAKVGGIVANNTYP 76
Query: 90 -------------ILDAL--PNLEQFIYCSSAGVYLKSDLLPHCETD----TVDPK---- 126
I+ A ++ + ++ S+ +Y K P E++ T++P
Sbjct: 77 ADFIYQNMMIESNIIHAAHQNDVNKLLFLGSSCIYPKLAKQPMAESELLQGTLEPTNEPY 136
Query: 127 --SRHKGKLNTESVLESKGVNWTSLRPVYIYGPL-NYNPVEEWF-------FHRLKAGRP 176
++ G ES G ++ S+ P +YGP N++P FH A
Sbjct: 137 AIAKIAGIKLCESYNRQYGRDYRSVMPTNLYGPHDNFHPSNSHVIPALLRRFHEATAQNA 196
Query: 177 --IPIPGSGIQVTQLGHVKDLARAFVQV--------LGNEKASRQVFNISGEKYVTFDGL 226
+ + GSG + + HV D+A A + V L N + N+ T L
Sbjct: 197 PDVVVWGSGTPMREFLHVDDMAAASIHVMELAHEVWLENTQPMLSHINVGTGVDCTIREL 256
Query: 227 ARACAKVTGY 236
A+ AKV GY
Sbjct: 257 AQTIAKVVGY 266
>sp|Q6MWV3|GALE_MYCTU UDP-glucose 4-epimerase OS=Mycobacterium tuberculosis GN=galE1 PE=3
SV=1
Length = 314
Score = 38.1 bits (87), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 55/212 (25%), Positives = 86/212 (40%), Gaps = 33/212 (15%)
Query: 2 GGTRFIGVFLSRLLVKEGHQVT---LFTRGKAPIAQQLPGESDQEF--AEFSSKILH--L 54
G FIG L L+ +GH V F G+A + L S F A+ + LH L
Sbjct: 7 GAAGFIGSTLVDRLLADGHSVVGLDNFATGRATNLEHLADNSAHVFVEADIVTADLHAIL 66
Query: 55 KGDRKDYDF-------VKSSLSAKGFDVVYDING--READEVEPILDALPNLEQFIYCSS 105
+ R + F V+ S++ FD ++ G R A+ + + ++ SS
Sbjct: 67 EQHRPEVVFHLAAQIDVRRSVADPQFDAAVNVIGTVRLAEAARQT-----GVRKIVHTSS 121
Query: 106 AG-VYLKSDLLPHCETDTVDPKSRH-KGKLNTESVLES----KGVNWTSLRPVYIYGPLN 159
G +Y P ET DP S + GK+ E L + G++ + + P +YGP
Sbjct: 122 GGSIYGTPPEYPTPETAPTDPASPYAAGKVAGEIYLNTFRHLYGLDCSHIAPANVYGP-R 180
Query: 160 YNP-----VEEWFFHRLKAGRPIPIPGSGIQV 186
+P V F L +G+P + G G
Sbjct: 181 QDPHGEAGVVAIFAQALLSGKPTRVFGDGTNT 212
>sp|Q67WR5|FCL2_ORYSJ Putative GDP-L-fucose synthase 2 OS=Oryza sativa subsp. japonica
GN=Os06g0652300 PE=3 SV=1
Length = 347
Score = 37.4 bits (85), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 48/111 (43%), Gaps = 11/111 (9%)
Query: 136 ESVLESKGVNWTSLRPVYIYGPLNYNPVEEWF--------FHR--LKAGRPIPIPGSGIQ 185
++V G++ + P +YGP + P E FHR L+ + + GSG
Sbjct: 180 QAVRAEYGLDAIAAAPNNLYGPRHPFPPEHSHVIPALIRRFHRAKLEGAGEVAVWGSGAA 239
Query: 186 VTQLGHVKDLARAFVQVLGNEKASRQVFNISGEKYVTFDGLARACAKVTGY 236
+ HV DLA A V VL + + N+ + VT LA A V GY
Sbjct: 240 AREFTHVDDLAEAVV-VLMERYSGEEHVNVGSGEEVTVRELAEAVRGVVGY 289
>sp|Q6P0H7|CBR4_DANRE Carbonyl reductase family member 4 OS=Danio rerio GN=cbr4 PE=2
SV=1
Length = 237
Score = 37.4 bits (85), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
Query: 2 GGTRFIGVFLSRLLVKEGHQVTLFTRGKAP---IAQQLPGES 40
GG+R IG S+LL + GH++ L +R K AQ LPGE+
Sbjct: 9 GGSRGIGRAASKLLAQRGHRIVLLSRNKEAAQSTAQSLPGEN 50
>sp|Q55C77|FCL_DICDI GDP-L-fucose synthase OS=Dictyostelium discoideum GN=ger PE=3 SV=1
Length = 320
Score = 37.0 bits (84), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 46/99 (46%), Gaps = 10/99 (10%)
Query: 140 ESKGVNWTSLRPVYIYGP-----LNYNPVEEWFFHR----LKAGRPIPIPGSGIQVTQLG 190
E G +TS+ P IYGP L V H+ +K + + I G+G + Q
Sbjct: 158 EEYGCKFTSVIPTNIYGPHDNYHLTDGHVIPGLIHKTYLAMKNNQDLTIMGTGKPLRQFI 217
Query: 191 HVKDLARAFVQVLGN-EKASRQVFNISGEKYVTFDGLAR 228
+ DLA+ FV L N E+ S + ++ E ++ +AR
Sbjct: 218 YSYDLAKYFVWTLNNYEEMSPLILSVGEEDEISIADVAR 256
>sp|Q331Q7|GERKI_STRSQ dTDP-4-dehydro-6-deoxyglucose reductase OS=Streptomyces sp.
GN=gerKI PE=1 SV=1
Length = 326
Score = 37.0 bits (84), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 42/101 (41%), Gaps = 7/101 (6%)
Query: 140 ESKGVNWTSLRPVYIYGP-----LNYNPVEEWFFHRLKAGRPIPIPGSGIQVTQLGHVKD 194
E G N +RP +YGP + V + AG I I G G Q HV D
Sbjct: 176 EQFGTNVFLVRPGNVYGPGDGFDCSRGRVIPSMLAKADAGEEIEIWGDGSQTRSFVHVAD 235
Query: 195 LARAFVQVLGNEKASRQVFNISGEKYVTFDGLARACAKVTG 235
L RA +++L E N++G + V+ LA V G
Sbjct: 236 LVRASLRLL--ETGKYPEMNVAGAEQVSILELAGMVMAVLG 274
>sp|P55584|Y4NL_RHISN Uncharacterized protein y4nL OS=Rhizobium sp. (strain NGR234)
GN=NGR_a02300 PE=4 SV=1
Length = 356
Score = 36.6 bits (83), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 61/139 (43%), Gaps = 9/139 (6%)
Query: 118 CETDTVDPKSRH-KGKLNTESVLESKGVNWTSLRPVYIYGPLNYNP----VEEWFFHRLK 172
E DP + + + K+ E L ++ +++ V + P Y P + FF +K
Sbjct: 149 TEESPYDPHAGYGRSKMLMERALRAEVAAGSTMEIVIVRAPWFYGPNQPSRQTLFFKMVK 208
Query: 173 AGRPIPIPGSGIQVTQLGHVKDLARAFVQVLGNEKASRQVFNISGEKYVTFDGLARACAK 232
G+ PI GSG +G+ +LA+ + +E+A+ +F ++ E T + +
Sbjct: 209 EGK-FPIIGSGRNRRSMGYTDNLAQGILLAAVHERAAGDIFWLADETPYTMNEIIEVVGM 267
Query: 233 VTGYCIAGSVE---HRMPD 248
V +V+ R+PD
Sbjct: 268 VLHEDFGMTVKPNPFRLPD 286
>sp|Q31I61|MURD_THICR UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Thiomicrospira
crunogena (strain XCL-2) GN=murD PE=3 SV=1
Length = 449
Score = 35.8 bits (81), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 30/64 (46%)
Query: 11 LSRLLVKEGHQVTLFTRGKAPIAQQLPGESDQEFAEFSSKILHLKGDRKDYDFVKSSLSA 70
L + +V+ Q LF + KA IAQQLP E Q S +L K K D V S +
Sbjct: 358 LGQAVVQSCRQAILFGQDKAIIAQQLPQEKIQLVDTLSEAVLLAKTIAKSGDAVLFSPAC 417
Query: 71 KGFD 74
FD
Sbjct: 418 ASFD 421
>sp|P09147|GALE_ECOLI UDP-glucose 4-epimerase OS=Escherichia coli (strain K12) GN=galE
PE=1 SV=1
Length = 338
Score = 35.0 bits (79), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 71/295 (24%), Positives = 114/295 (38%), Gaps = 53/295 (17%)
Query: 2 GGTRFIGVFLSRLLVKEGHQVTLF------TRGKAPIAQQLPG------ESDQEFAEFSS 49
GG+ +IG L++ GH V + R P+ ++L G E D +
Sbjct: 7 GGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMT 66
Query: 50 KILHLKGDRKDYDFVKSSLSAKGFDV-----VYDINGREADEVEPILDALPNLEQFIYCS 104
+ILH F + L A G V YD N + + A N++ FI+ S
Sbjct: 67 EILHDHAIDTVIHF--AGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAA-NVKNFIFSS 123
Query: 105 SAGVYLKSDLLPHCET-DTVDPKSRH-KGKLNTESV---LESKGVNWTSLRPVYIYGPLN 159
SA VY +P+ E+ T P+S + K KL E + L+ +W S+ + + P+
Sbjct: 124 SATVYGDQPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDW-SIALLRYFNPVG 182
Query: 160 YNPVEEW-------------FFHRLKAGR--PIPIPGS------GIQVTQLGHVKDLARA 198
+P + + ++ GR + I G+ G V HV DLA
Sbjct: 183 AHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIHVMDLADG 242
Query: 199 FVQVLGN--EKASRQVFNI-SGEKYVTFD---GLARACAKVTGYCIAGSVEHRMP 247
V + K ++N+ +G D ++AC K Y A E +P
Sbjct: 243 HVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRREGDLP 297
>sp|Q559Z0|NDUA9_DICDI NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9,
mitochondrial OS=Dictyostelium discoideum GN=ndufa9 PE=3
SV=1
Length = 356
Score = 35.0 bits (79), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 55/239 (23%), Positives = 102/239 (42%), Gaps = 41/239 (17%)
Query: 1 MGGTRFIGVFLSRLLVKEGHQVTLFTRGKAPIAQQLPGESDQEFAEFSSKILHLKGDRKD 60
G T F G +L +LL + G QV + P + G D + +I+ ++ D +D
Sbjct: 45 FGATGFTGRYLVQLLARTGIQVVV------PYRCEDEGFRDLKVLGELGQIIPVRFDIRD 98
Query: 61 YDFVKSSLSAKGFDVVYDINGREADE------------VEPILDALPNLEQFIYCSSAGV 108
+ ++ ++S ++V ++ GR+ + I D N+E++I+ S+ +
Sbjct: 99 SESIERAISHS--NIVINMAGRDYETRNFSLDDINVHAASRIADLSKNVEKYIHVST--L 154
Query: 109 YLKSDLLPHCETDTVDPKSRHKGKLNTESVLESKGVNWTSLRPVYIYGPLNYNPVEEWFF 168
D H +S+ G+ T ++ N T +RP I+G E+ F
Sbjct: 155 RASEDSPSHFS------RSKAIGEKLTREIIP----NCTVVRPSIIFGD------EDKFI 198
Query: 169 HRL-KAGRPIP-IPGSGIQ-VTQLGHVKDLARAFVQVLGNEKASRQVFNISGEKYVTFD 224
++ K + P IP Q Q H DLA + +L S +V+ +G++ T+D
Sbjct: 199 NKWSKVSQNWPFIPRYNQQHKIQPLHCYDLASGILSILETPGTSGKVYEFAGDEVFTWD 257
>sp|Q17QH8|D39U1_BOVIN Epimerase family protein SDR39U1 OS=Bos taurus GN=SDR39U1 PE=2
SV=1
Length = 294
Score = 35.0 bits (79), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 20/30 (66%)
Query: 2 GGTRFIGVFLSRLLVKEGHQVTLFTRGKAP 31
GGT FIG L++LL GH+VTL +R P
Sbjct: 7 GGTGFIGTALTQLLKARGHEVTLISRKPGP 36
>sp|P55294|RMLB_NEIMB dTDP-glucose 4,6-dehydratase OS=Neisseria meningitidis serogroup B
(strain MC58) GN=rfbB1 PE=3 SV=2
Length = 355
Score = 35.0 bits (79), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 174 GRPIPIPGSGIQVTQLGHVKDLARAFVQVLGNEKASRQVFNISGEK 219
G+P+P+ G G+Q+ V+D ARA QV+ E + +NI G
Sbjct: 211 GKPLPVYGDGMQIRDWLFVEDHARALYQVV-TEGVVGETYNIGGHN 255
>sp|Q9ZAE8|RMLB_ACTS5 dTDP-glucose 4,6-dehydratase OS=Actinoplanes sp. (strain ATCC 31044
/ CBS 674.73 / SE50/110) GN=acbB PE=3 SV=2
Length = 320
Score = 35.0 bits (79), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 53/128 (41%), Gaps = 7/128 (5%)
Query: 96 NLEQFIYCSSAGVYLKSDLLPHCETDTVDPKSRHKGKLNTESVL-----ESKGVNWTSLR 150
++ +F++ S+ VY D E + P S + +L ++ G++ R
Sbjct: 119 HIGRFLHVSTDEVYGSIDTGSWAEGHPLAPNSPYAASKAGSDLLALAYHQTHGMDVVVTR 178
Query: 151 PVYIYGPLNY-NPVEEWFFHRLKAGRPIPIPGSGIQVTQLGHVKDLARAFVQVLGNEKAS 209
YGP + + F RL G +P+ G G + HV D R LG +A
Sbjct: 179 CSNNYGPRQFPEKMIPLFVTRLLDGLDVPVYGDGRNIRDWLHVSDHCRGLALALGAGRAG 238
Query: 210 RQVFNISG 217
+V++I G
Sbjct: 239 -EVYHIGG 245
>sp|P39631|SPSK_BACSU Spore coat polysaccharide biosynthesis protein SpsK OS=Bacillus
subtilis (strain 168) GN=spsK PE=3 SV=3
Length = 283
Score = 34.7 bits (78), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 50/230 (21%), Positives = 93/230 (40%), Gaps = 16/230 (6%)
Query: 7 IGVFLSRLLVKEGHQVTLFTRGKAPIAQQLPGESDQEFAEFSSKILHLKGDRKDYDFVKS 66
+G+ L R L + G++V T+ IA Q F + I+ F
Sbjct: 13 LGLELCRQLKQAGYEVIALTKKMMNIADQR--SVRHSFGHYQPDIV-----VNSAAFTSV 65
Query: 67 SLSAKGFDVVYDINGREADEVEPILDALPNLEQFIYCSSAGVYLKSDLLPHCETDTVDPK 126
K D Y ING A L++ Q+++ S+ V+ P+ E D +DPK
Sbjct: 66 DQCEKELDKAYLINGIGA--YYTALESTRIGAQYVHISTDYVFNGKGTQPYREDDPLDPK 123
Query: 127 SRH-KGKLNTESVLESKGVNWTSLRPVYIYGPLNYNPVEEWFFHRLKAGRPIPIPGSGIQ 185
+ + K K E ++ + T +R ++YG N VE + + + + Q
Sbjct: 124 TIYGKSKRLGEELIRLTTKDSTIIRTSWVYGHGGSNFVET-MLKLAETKQELRVVSD--Q 180
Query: 186 VTQLGHVKDLARAFVQVLGNEKASRQVFNISGEKYVTFDGLARACAKVTG 235
+ + KDLA A +++ + ++++S ++ A A + +G
Sbjct: 181 IGSPTYTKDLAEAVIKLFSHPPG---IYHVSNSGICSWYEFATAIMEESG 227
>sp|O95455|TGDS_HUMAN dTDP-D-glucose 4,6-dehydratase OS=Homo sapiens GN=TGDS PE=2 SV=1
Length = 350
Score = 34.7 bits (78), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 51/125 (40%), Gaps = 7/125 (5%)
Query: 97 LEQFIYCSSAGVY---LKSDLLPHCETDTVDP--KSRHKGKLNTESVLESKGVNWTSLRP 151
+E+FIY S+ VY L + +P S+ + +S E R
Sbjct: 134 VEKFIYVSTDEVYGGSLDKEFDESSPKQPTNPYASSKAAAECFVQSYWEQYKFPVVITRS 193
Query: 152 VYIYGPLNY-NPVEEWFFHRLKAGRPIPIPGSGIQVTQLGHVKDLARAFVQVLGNEKASR 210
+YGP Y V F L+ R I GSG+Q + D+ AF+ VL K
Sbjct: 194 SNVYGPHQYPEKVIPKFISLLQHNRKCCIHGSGLQTRNFLYATDVVEAFLTVLKKGKPG- 252
Query: 211 QVFNI 215
+++NI
Sbjct: 253 EIYNI 257
>sp|Q9S642|RMLB_NEIMA dTDP-glucose 4,6-dehydratase OS=Neisseria meningitidis serogroup A
/ serotype 4A (strain Z2491) GN=rfbB1 PE=3 SV=1
Length = 341
Score = 34.7 bits (78), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 174 GRPIPIPGSGIQVTQLGHVKDLARAFVQVLGNEKASRQVFNISG 217
G+P+P+ G G+Q+ V+D ARA QV+ E + +NI G
Sbjct: 211 GKPLPVYGDGMQIRDWLFVEDHARALYQVV-TEGVVGETYNIGG 253
>sp|O54067|LPSL_RHIME UDP-glucuronate 5'-epimerase OS=Rhizobium meliloti (strain 1021)
GN=lspL PE=3 SV=2
Length = 341
Score = 34.3 bits (77), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 46/112 (41%), Gaps = 7/112 (6%)
Query: 98 EQFIYCSSAGVYLKSDLLPHCETDTVD------PKSRHKGKLNTESVLESKGVNWTSLRP 151
+ + S++ +Y ++ +P E D D ++ +L S V TS R
Sbjct: 120 KHLMLASTSSIYGANEKIPFAEADRADEPMTLYAATKKSMELMAHSYAHLYKVPTTSFRF 179
Query: 152 VYIYGPLNYNPVEEW-FFHRLKAGRPIPIPGSGIQVTQLGHVKDLARAFVQV 202
+YGP + + F + GRPI I G G ++ DL + V++
Sbjct: 180 FTVYGPWGRPDMALFKFVDAIHNGRPIDIYGEGRMSRDFTYIDDLVESIVRL 231
>sp|P26391|RMLB_SALTY dTDP-glucose 4,6-dehydratase OS=Salmonella typhimurium (strain LT2
/ SGSC1412 / ATCC 700720) GN=rfbB PE=1 SV=1
Length = 361
Score = 34.3 bits (77), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 174 GRPIPIPGSGIQVTQLGHVKDLARAFVQVLGNEKASRQVFNISG 217
G+P+PI G G Q+ +V+D ARA V+ KA + +NI G
Sbjct: 218 GKPLPIYGKGDQIRDWLYVEDHARALHMVVTEGKAG-ETYNIGG 260
>sp|A6QLW2|TGDS_BOVIN dTDP-D-glucose 4,6-dehydratase OS=Bos taurus GN=TGDS PE=2 SV=1
Length = 355
Score = 33.9 bits (76), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 51/125 (40%), Gaps = 7/125 (5%)
Query: 97 LEQFIYCSSAGVY---LKSDLLPHCETDTVDP--KSRHKGKLNTESVLESKGVNWTSLRP 151
+E+FIY S+ VY L + +P S+ + +S E R
Sbjct: 134 VEKFIYVSTDEVYGGSLDKEFDESSPKQPTNPYASSKAAAECFVQSYWEQYKFPVVITRS 193
Query: 152 VYIYGPLNY-NPVEEWFFHRLKAGRPIPIPGSGIQVTQLGHVKDLARAFVQVLGNEKASR 210
+YGP Y V F L+ R I G+G+Q + D+ AF+ VL K
Sbjct: 194 SNVYGPHQYPEKVIPKFISLLQHNRKCCIHGTGLQTRNFLYATDVVEAFLTVLKKGKPG- 252
Query: 211 QVFNI 215
+++NI
Sbjct: 253 EIYNI 257
>sp|P37761|RMLB_NEIGO dTDP-glucose 4,6-dehydratase OS=Neisseria gonorrhoeae GN=rfbB PE=3
SV=1
Length = 346
Score = 33.9 bits (76), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 173 AGRPIPIPGSGIQVTQLGHVKDLARAFVQVLGNEKASRQVFNISG 217
+G+P+P+ G G Q+ V+D ARA QV+ E + +NI G
Sbjct: 215 SGKPLPVYGDGAQIRDWLFVEDHARALYQVV-TEGVVGETYNIGG 258
>sp|O57314|DHB12_ANAPL Estradiol 17-beta-dehydrogenase 12 OS=Anas platyrhynchos
GN=HSD17B12 PE=2 SV=1
Length = 312
Score = 33.5 bits (75), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 51/101 (50%), Gaps = 3/101 (2%)
Query: 2 GGTRFIGVFLSRLLVKEGHQVTLFTRGKAPIAQQLPGESDQEFAEFSSKILHLKGDRKD- 60
G T IG ++ L K G +V L +R K + Q+ GE +++ + I+ G+R+D
Sbjct: 55 GATDGIGKAYAKELAKRGMKVALISRSKEKL-DQVAGEITEQYGVETKVIVADFGEREDI 113
Query: 61 YDFVKSSLSAKGFDVVYDINGREADEVEPILDALPNLEQFI 101
YD +++ L V+ + G E +D +P+L++ I
Sbjct: 114 YDRIRAGLEGLEIGVLVNNVGISYSYPEYFID-VPDLDKTI 153
>sp|B5YH68|AROA_THEYD 3-phosphoshikimate 1-carboxyvinyltransferase OS=Thermodesulfovibrio
yellowstonii (strain ATCC 51303 / DSM 11347 / YP87)
GN=aroA PE=3 SV=1
Length = 430
Score = 33.1 bits (74), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 76/160 (47%), Gaps = 34/160 (21%)
Query: 106 AGVYLKSDLLPHCETDTVDPKSRHKGKLNTESVLESKGVNW------TSLRPVY------ 153
AG+Y K ET +P HK + +TE +L++ GVN L PV
Sbjct: 177 AGLYAKG------ETTLTEP---HKSRDHTEKMLKNMGVNIIINDNTVKLSPVDHELNCF 227
Query: 154 -IYGPLNYNPVEEWFFHRLKAGRPIPIPGSGIQVTQLGHVKDLARAFVQVLGNEKASRQV 212
I P +++ FF AG + +P S I + Q+ ++ + F++VL N A+ ++
Sbjct: 228 DITIPNDFSSA--AFFI---AGACL-VPDSEILIKQV-NLNETRTGFIEVLKNMGATIEI 280
Query: 213 FNIS---GEKYVTFDGLARACAKVTGYCIAGSVEHRMPDD 249
FNI+ GE D A++ +++ G + G + ++ D+
Sbjct: 281 FNITEQGGEP--VGDIFAKSSSELKGINVQGDIIPKLIDE 318
>sp|B0WSX1|MOCO2_CULQU Molybdenum cofactor sulfurase 2 OS=Culex quinquefasciatus GN=mal2
PE=3 SV=1
Length = 760
Score = 33.1 bits (74), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 9/74 (12%)
Query: 93 ALPNLEQFIYCSSAGVYLKSDLLPHCETDTVDPK-----SRHKGKLNTESVLESKGVNWT 147
AL N QF+ + A V +DL+P + + +P R +G L +SV + +WT
Sbjct: 624 ALSNQAQFLLINQASVRWLADLVPDWDDLSQEPTLESLVDRFRGNLIIDSVKPLEESSWT 683
Query: 148 SLRPVYIYGPLNYN 161
LR GPL ++
Sbjct: 684 QLR----IGPLEFS 693
>sp|Q56093|GALE_SALTI UDP-glucose 4-epimerase OS=Salmonella typhi GN=galE PE=3 SV=2
Length = 338
Score = 32.7 bits (73), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 65/157 (41%), Gaps = 22/157 (14%)
Query: 2 GGTRFIGVFLSRLLVKEGHQVTLF------TRGKAPIAQQLPG------ESDQEFAEFSS 49
GG+ +IG L++ GH V + R P+ ++L G E D +
Sbjct: 7 GGSGYIGSHTCVQLLQNGHDVVILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALIT 66
Query: 50 KILHLKGDRKDYDFVKSSLSAKGFDVV-----YDINGREADEVEPILDALPNLEQFIYCS 104
+ILH F + L A G V YD N + + A N++ I+ S
Sbjct: 67 EILHDHAIDTVIHF--AGLKAVGESVAKPLEYYDNNVNGTLRLVSAMRA-ANVKNLIFSS 123
Query: 105 SAGVYLKSDLLPHCET-DTVDPKSRH-KGKLNTESVL 139
SA VY +P+ E+ T P+S + K KL E +L
Sbjct: 124 SATVYGDQPKIPYVESFPTGTPQSPYGKSKLMVEQIL 160
>sp|P22715|GALE_SALTY UDP-glucose 4-epimerase OS=Salmonella typhimurium (strain LT2 /
SGSC1412 / ATCC 700720) GN=galE PE=3 SV=2
Length = 338
Score = 32.7 bits (73), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 65/157 (41%), Gaps = 22/157 (14%)
Query: 2 GGTRFIGVFLSRLLVKEGHQVTLF------TRGKAPIAQQLPG------ESDQEFAEFSS 49
GG+ +IG L++ GH V + R P+ ++L G E D +
Sbjct: 7 GGSGYIGSHTCVQLLQNGHDVVILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALIT 66
Query: 50 KILHLKGDRKDYDFVKSSLSAKGFDVV-----YDINGREADEVEPILDALPNLEQFIYCS 104
+ILH F + L A G V YD N + + A N++ I+ S
Sbjct: 67 EILHDHAIDTVIHF--AGLKAVGESVARPLEYYDNNVNGTLRLVSAMRAA-NVKNLIFSS 123
Query: 105 SAGVYLKSDLLPHCET-DTVDPKSRH-KGKLNTESVL 139
SA VY +P+ E+ T P+S + K KL E +L
Sbjct: 124 SATVYGDQPKIPYVESFPTGTPQSPYGKSKLMVEQIL 160
>sp|O34886|YTCB_BACSU Uncharacterized UDP-glucose epimerase YtcB OS=Bacillus subtilis
(strain 168) GN=ytcB PE=3 SV=1
Length = 316
Score = 32.3 bits (72), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 53/137 (38%), Gaps = 25/137 (18%)
Query: 96 NLEQFIYCSSAGVYLK-----------SDLLPHCETDTVDPKSRHKGKLNTESVLESKGV 144
+++ F++ S++ VY + S L P+ T K H K +S G+
Sbjct: 117 SIQTFVFASTSSVYGEKQGKVSENTSLSPLSPYGVTKLTGEKLCHVYK-------QSFGI 169
Query: 145 NWTSLRPVYIYGPLNYNPVEEWFFHRL----KAGRPIPIPGSGIQVTQLGHVKDLARAFV 200
LR +YGP + FHRL +P+ I G G Q ++ D +
Sbjct: 170 PIVILRFFTVYGPRQR---PDMAFHRLIKQHLQQKPLTIFGDGQQSRDFTYISDCVKGIT 226
Query: 201 QVLGNEKASRQVFNISG 217
VLG + NI G
Sbjct: 227 AVLGKPHLIGETVNIGG 243
>sp|Q9LPG6|RHM2_ARATH Probable rhamnose biosynthetic enzyme 2 OS=Arabidopsis thaliana
GN=RHM2 PE=1 SV=1
Length = 667
Score = 32.3 bits (72), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 65/148 (43%), Gaps = 10/148 (6%)
Query: 97 LEQFIYCSSAGVYLKSD---LLPHCETDTVDPKSRHKGKLNTESVL-----ESKGVNWTS 148
+ +FI+ S+ VY ++D + + E + P + + +L S G+ +
Sbjct: 126 IRRFIHVSTDEVYGETDEDAAVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVIT 185
Query: 149 LRPVYIYGPLNY-NPVEEWFFHRLKAGRPIPIPGSGIQVTQLGHVKDLARAFVQVLGNEK 207
R +YGP + + F +G+P+PI G G V + +D+A AF VL +
Sbjct: 186 TRGNNVYGPNQFPEKMIPKFILLAMSGKPLPIHGDGSNVRSYLYCEDVAEAFEVVLHKGE 245
Query: 208 ASRQVFNISGEKYVTFDGLARACAKVTG 235
V+N+ ++ +AR K+ G
Sbjct: 246 IG-HVYNVGTKRERRVIDVARDICKLFG 272
>sp|Q04871|YCL2_ECO11 Uncharacterized 37.6 kDa protein in cld 5'region OS=Escherichia
coli O111:H- PE=3 SV=1
Length = 334
Score = 32.3 bits (72), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 24/113 (21%), Positives = 49/113 (43%), Gaps = 7/113 (6%)
Query: 97 LEQFIYCSSAGVYLKSDLLPHCETDTVD------PKSRHKGKLNTESVLESKGVNWTSLR 150
++ +Y SS+ VY + +P D+VD ++ +L + G+ T LR
Sbjct: 118 IQHLLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGLPATGLR 177
Query: 151 PVYIYGPLNYNPVEEWFFHR-LKAGRPIPIPGSGIQVTQLGHVKDLARAFVQV 202
+YGP + + F + + G+ I + G ++ D+A A +++
Sbjct: 178 FFTVYGPWGRPDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAIIRL 230
>sp|Q9SK66|NDUA9_ARATH NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9,
mitochondrial OS=Arabidopsis thaliana GN=At2g20360 PE=2
SV=2
Length = 402
Score = 32.3 bits (72), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 12/84 (14%)
Query: 2 GGTRFIGVFLSRLLVKEGHQVTLFTRGK--APIAQQLPGESDQEFAEFSSKILHLKGDRK 59
G T F+G +L + L K G QV + RG +P +L G+ Q ++ +K D +
Sbjct: 75 GATGFLGRYLVQQLAKMGSQVLVPFRGSEDSPRHLKLMGDLGQ--------VVPMKFDPR 126
Query: 60 DYDFVKSSLSAKGFDVVYDINGRE 83
D D +K+ ++ +VV ++ GRE
Sbjct: 127 DEDSIKAVMAKA--NVVINLIGRE 148
>sp|Q7WTB1|GALE_LACHE UDP-glucose 4-epimerase OS=Lactobacillus helveticus GN=galE PE=2
SV=1
Length = 330
Score = 32.3 bits (72), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 73/170 (42%), Gaps = 16/170 (9%)
Query: 1 MGGTRFIGVFLSRLLVKEGHQV----TLFT---RGKAPIAQQLPGESDQEFAEFSSKILH 53
+GG +IG R LVKEG+ V L+T + P A+ G+ + F SKIL
Sbjct: 6 IGGAGYIGSHAVRELVKEGNDVLVLDALYTGHRKAVDPKAKFYQGDIEDTF--LVSKILR 63
Query: 54 LKGDRKDYDFVKSSLSAKGFDVVYDINGREADEVEPILDAL--PNLEQFIYCSSAGVYLK 111
+ F SL + + +L A+ N++ ++ SSA Y
Sbjct: 64 DEKIDAVMHFAAYSLVPESVKKPLKYYDNNVTGMISLLQAMNDANVKYLVFSSSAATYGI 123
Query: 112 SDLLPHCETDTVDPKSRH-KGKLNTESVL----ESKGVNWTSLRPVYIYG 156
LP E ++P + + + K+ E ++ ++ G+ +T+LR + G
Sbjct: 124 PKKLPITEDTPLNPINPYGETKMMMEKIMAWADKADGIKYTALRYFNVAG 173
>sp|Q8VDR7|TGDS_MOUSE dTDP-D-glucose 4,6-dehydratase OS=Mus musculus GN=Tgds PE=2 SV=2
Length = 355
Score = 32.3 bits (72), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 51/125 (40%), Gaps = 7/125 (5%)
Query: 97 LEQFIYCSSAGVY---LKSDLLPHCETDTVDP--KSRHKGKLNTESVLESKGVNWTSLRP 151
+E+FIY S+ VY L + +P S+ + +S E R
Sbjct: 134 VEKFIYVSTDEVYGGSLDQEFDESSPKQPTNPYASSKAAAECFVQSYWERYKFPVVITRS 193
Query: 152 VYIYGPLNY-NPVEEWFFHRLKAGRPIPIPGSGIQVTQLGHVKDLARAFVQVLGNEKASR 210
+YGP Y V F L+ R I GSG+Q + D+ AF+ VL +
Sbjct: 194 SNVYGPHQYPEKVIPKFISLLQHNRKCCIHGSGLQRRNFLYAADVVEAFLTVLTKGEPG- 252
Query: 211 QVFNI 215
+++NI
Sbjct: 253 EIYNI 257
>sp|B2SG17|TIG_FRATM Trigger factor OS=Francisella tularensis subsp. mediasiatica
(strain FSC147) GN=tig PE=3 SV=1
Length = 438
Score = 32.0 bits (71), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 58/121 (47%), Gaps = 20/121 (16%)
Query: 42 QEFAEFSS--KILHLKGDRKDYDFVKSSLSAKGFDV------VYDINGREADEVEPILDA 93
+E AEF + ++ + D + +K AKGFDV +++ N ++ E ILD+
Sbjct: 293 REIAEFETPKSLIKREIDAAKQNLLKQMGGAKGFDVNQLPDNLFEANAKQKVETSLILDS 352
Query: 94 LPNLEQFIYCSSAGVYLKSDLLPHCETDTVDP-KSRHKGKLNTES-------VLESKGVN 145
+ NL++F + L +L+ E +P K++ + K N + V+E+K +
Sbjct: 353 IMNLQEFKAEEAEVESLLDELVQAYE----EPEKTKEQIKKNDKEIANLKALVIENKLTD 408
Query: 146 W 146
W
Sbjct: 409 W 409
>sp|Q761X5|UNC5C_RAT Netrin receptor UNC5C OS=Rattus norvegicus GN=Unc5c PE=2 SV=1
Length = 931
Score = 32.0 bits (71), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 48/103 (46%), Gaps = 21/103 (20%)
Query: 52 LHLKGDRKDYDFVKSSLSAKG------FDVVYDINGREADEVEPILDALPNLEQFIYCSS 105
+++K R+D V L++ ++D++ + PILD LPNL+ +Y SS
Sbjct: 426 VNIKAARQDLLAVPPDLTSAAAMYRGPVYALHDVSDKIPMTNSPILDPLPNLKIKVYNSS 485
Query: 106 AGVYLKSDLLPHCETDTVDPKSRHKGKLN---TESVLESKGVN 145
V + DL + KL+ T+S+LE++ +N
Sbjct: 486 GAVTPQDDL------------AEFSSKLSPQMTQSLLENEALN 516
>sp|O08747|UNC5C_MOUSE Netrin receptor UNC5C OS=Mus musculus GN=Unc5c PE=1 SV=1
Length = 931
Score = 32.0 bits (71), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 48/103 (46%), Gaps = 21/103 (20%)
Query: 52 LHLKGDRKDYDFVKSSLSAKG------FDVVYDINGREADEVEPILDALPNLEQFIYCSS 105
+++K R+D V L++ ++D++ + PILD LPNL+ +Y SS
Sbjct: 426 VNIKAARQDLLAVPPDLTSAAAMYRGPVYALHDVSDKIPMTNSPILDPLPNLKIKVYNSS 485
Query: 106 AGVYLKSDLLPHCETDTVDPKSRHKGKLN---TESVLESKGVN 145
V + DL + KL+ T+S+LE++ +N
Sbjct: 486 GAVTPQDDL------------AEFSSKLSPQMTQSLLENEALN 516
>sp|Q5E9H7|DHB12_BOVIN Estradiol 17-beta-dehydrogenase 12 OS=Bos taurus GN=HSD17B12 PE=2
SV=1
Length = 312
Score = 32.0 bits (71), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 51/101 (50%), Gaps = 4/101 (3%)
Query: 2 GGTRFIGVFLSRLLVKEGHQVTLFTRGKAPIAQQLPGESDQEFAEFSSKILHLKGDRKD- 60
GGT IG + L K G ++ L +R + + Q+ E ++F + +K + + +D
Sbjct: 57 GGTDGIGKSYAEELAKRGMKIVLISRSQDKL-DQVSSEISEKF-KVETKTIAVDFTSEDI 114
Query: 61 YDFVKSSLSAKGFDVVYDINGREADEVEPILDALPNLEQFI 101
YD +K+SL+ V+ + G + E LD +P+L+ I
Sbjct: 115 YDKIKASLAGLNIGVLVNNVGMSYEYPEYFLD-VPDLDNTI 154
>sp|P29782|RMLB_STRGR dTDP-glucose 4,6-dehydratase OS=Streptomyces griseus GN=strE PE=1
SV=1
Length = 328
Score = 31.6 bits (70), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 51/215 (23%), Positives = 82/215 (38%), Gaps = 30/215 (13%)
Query: 14 LLVKEGHQVTLFTRGK---APIAQQLPGESDQEFAEFSSKILHLKGDRKDYDFVKSSLSA 70
L GH F RG AP + + G+ +++HL + V SL
Sbjct: 48 LAAVRGHPRYRFERGDICDAPGRRVMAGQD---------QVVHLAAE----SHVDRSLLD 94
Query: 71 KGFDVVYDINGREADEVEPILDALP--NLEQFIYCSSAGVYLKSDLLPHCETDTVDPKSR 128
V +++G + +LDA + F+ S+ VY + E + + P S
Sbjct: 95 ASVFVRTNVHG-----TQTLLDAATRHGVASFVQVSTDEVYGSLEHGSWTEDEPLRPNSP 149
Query: 129 HKGKLNTESVLE-----SKGVNWTSLRPVYIYGPLNY-NPVEEWFFHRLKAGRPIPIPGS 182
+ + +L S G++ R YGP + + F L G +P+ G
Sbjct: 150 YSASKASGDLLALAHHVSHGLDVRVTRCSNNYGPRQFPEKLIPRFITLLMDGHRVPLYGD 209
Query: 183 GIQVTQLGHVKDLARAFVQVLGNEKASRQVFNISG 217
G+ V + HV D R V +A R V+NI G
Sbjct: 210 GLNVREWLHVDDHVRGIEAVRTRGRAGR-VYNIGG 243
>sp|Q54KB8|SYEC_DICDI Probable glutamate--tRNA ligase, cytoplasmic OS=Dictyostelium
discoideum GN=gluS PE=2 SV=1
Length = 764
Score = 31.6 bits (70), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 16 VKEGHQVTLFTRGKAPIAQQLPGESDQEFAEFSSKILHLKGDRKDYDFVKSSLSAKGFDV 75
+KEG +VTL G A I + L + + + K LHL+GD K D S LS+ D
Sbjct: 590 IKEGEEVTLMNWGNA-IVETLQRNENGDVVSMTGK-LHLEGDVKKTDKKLSWLSSDCADT 647
Query: 76 V 76
V
Sbjct: 648 V 648
>sp|Q9N119|3BHS_PIG 3 beta-hydroxysteroid dehydrogenase/Delta 5-->4-isomerase OS=Sus
scrofa GN=HSD3B PE=2 SV=4
Length = 373
Score = 31.6 bits (70), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 70/296 (23%), Positives = 118/296 (39%), Gaps = 84/296 (28%)
Query: 2 GGTRFIGVFLSRLLVKEG--HQVTLFTRGKAPIAQQLPGESDQEFAEFSSKI--LHLKGD 57
GG F+G + LL++E ++ + + P E +EF++ SKI L+GD
Sbjct: 10 GGGGFLGQRIVHLLLEEKDLQEIRVLDKVFKP-------EVREEFSKLQSKIKLTMLEGD 62
Query: 58 RKDYDFVKSSL--------SAKGFDVVYDINGREA------DEVEPILDAL--PNLEQFI 101
D +K + +A DVV + GRE + +L+A ++ FI
Sbjct: 63 ILDEQCLKGACQGASVVIHTASIIDVVNAV-GRETVMKVNVKGTQLLLEACVQASVPVFI 121
Query: 102 YCSSAGVY----LKSDLLPHCETDTVD-------PKSRHKGKLNTESVLESKG------- 143
+ SS V + + CE D ++ P S+ KL ++VLE+ G
Sbjct: 122 HTSSIEVAGPNSYREVIQNACEEDRLETAWSAPYPLSK---KLAEKAVLEANGWALQNGG 178
Query: 144 -VNWTSLRPVYIYG------------PLNYNPVEEWFFHRLKAGRPIPIPGSGIQVTQLG 190
++ +LRP+YIYG L N V H K R P+
Sbjct: 179 TLHTCALRPMYIYGEGSPFIFAHMNKALENNGV---LTHNSKFSRVNPV----------- 224
Query: 191 HVKDLARAFVQVLGNEKASRQVFNISGEKYV--------TFDGLARACAKVTGYCI 238
+V ++A A + L + R+ ++ G+ Y ++D L K G+C+
Sbjct: 225 YVGNVAWAHILALRALRDPRKALSVQGQFYYVADDTPPQSYDDLNYTLGKEWGFCL 280
>sp|P13395|SPTCA_DROME Spectrin alpha chain OS=Drosophila melanogaster GN=alpha-Spec PE=1
SV=2
Length = 2415
Score = 31.2 bits (69), Expect = 6.3, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
Query: 33 AQQLPGESDQEFAEFSSKILHLKGDRK---DYDFVKSSLSAKGFDVVYDINGREADEVEP 89
A+ G S+ EFS H D+ ++ KS L A G+D+ G+ E E
Sbjct: 2256 ARNHSGVSEDSLKEFSMMFKHFDKDKSGKLNHQEFKSCLRALGYDLPMVEEGQPDPEFEA 2315
Query: 90 ILDAL-PNLEQFI 101
ILD + PN + ++
Sbjct: 2316 ILDVVDPNRDGYV 2328
>sp|Q2YCZ2|THIG_NITMU Thiazole synthase OS=Nitrosospira multiformis (strain ATCC 25196 /
NCIMB 11849) GN=thiG PE=3 SV=1
Length = 264
Score = 31.2 bits (69), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Query: 47 FSSKILHLKGDRKDYDFVKSSLSAKGFDVVY----DINGREADEVEPILDALPNLEQFIY 102
+SS++L G +D+D ++++ A G +++ N + E +LD LP E +
Sbjct: 11 YSSRLLVGTGKYRDFDETRTAVDASGAEIITVAIRRTNLGQNPEEPSLLDVLPPSEYTLL 70
Query: 103 CSSAGVYLKSD 113
++AG Y D
Sbjct: 71 PNTAGCYTVED 81
>sp|Q04ED0|SECA_OENOB Protein translocase subunit SecA OS=Oenococcus oeni (strain ATCC
BAA-331 / PSU-1) GN=secA PE=3 SV=1
Length = 788
Score = 31.2 bits (69), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 6/54 (11%)
Query: 53 HLKGDRKDYD------FVKSSLSAKGFDVVYDINGREADEVEPILDALPNLEQF 100
H G +KD+D FV ++L G V D+NG+ ++++ +L L N E F
Sbjct: 646 HTTGQQKDWDLLSIVDFVDNALDNSGEITVADLNGKSLNDIKVLLYDLANREFF 699
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.138 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96,545,867
Number of Sequences: 539616
Number of extensions: 4104137
Number of successful extensions: 10034
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 57
Number of HSP's that attempted gapping in prelim test: 10015
Number of HSP's gapped (non-prelim): 66
length of query: 249
length of database: 191,569,459
effective HSP length: 115
effective length of query: 134
effective length of database: 129,513,619
effective search space: 17354824946
effective search space used: 17354824946
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)