BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025704
(249 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LSX7|PEX22_ARATH Peroxisome biogenesis protein 22 OS=Arabidopsis thaliana GN=PEX22
PE=1 SV=1
Length = 283
Score = 326 bits (836), Expect = 7e-89, Method: Compositional matrix adjust.
Identities = 164/243 (67%), Positives = 194/243 (79%), Gaps = 6/243 (2%)
Query: 13 DSRSVGAIAGLALAIVFTWRMFRSPGAPQRRQPKRQAPSTSNSVGSTQANATS------T 66
DSRS+GAIAGLA+A++FTWR R+PG ++R+ ++ + + + A + S
Sbjct: 41 DSRSIGAIAGLAIAVIFTWRAIRTPGEQRQRRQPKRRIHNAETSSAAAAASQSNLASSVA 100
Query: 67 PFGASSSSEDLRTQIADALFQPVKPTLGQVVRQKLSEGRKVTCRLLGVILEESCPEELQK 126
P +S ++ + D FQPVKPTLGQ+VRQKLSEGRKVTCRLLGVILEE+ PEELQK
Sbjct: 101 PEVSSPREDNAVQDVVDQFFQPVKPTLGQIVRQKLSEGRKVTCRLLGVILEETSPEELQK 160
Query: 127 QVTVKSSVLEALLEITKFCDLYLMERVLDNESEKKVLLALETAGVFTSGGLVKDKVLFCS 186
Q TV+SSVLE LLEITK+ DLYLMERVLD+ESE KVL ALE AGVFTSGGLVKDKVLFCS
Sbjct: 161 QATVRSSVLEVLLEITKYSDLYLMERVLDDESEAKVLQALENAGVFTSGGLVKDKVLFCS 220
Query: 187 TEIGRTSFVRQLEPDWHIDTNPEIVSQLARFIKYQLHISPNRPERSAANVFSSPSLEQFF 246
TEIGRTSFVRQLEPDWHIDTNPEI +QLARFIKYQLH++ +PER+A NVF+S S+EQFF
Sbjct: 221 TEIGRTSFVRQLEPDWHIDTNPEISTQLARFIKYQLHVATVKPERTAPNVFTSQSIEQFF 280
Query: 247 GCV 249
G V
Sbjct: 281 GSV 283
>sp|Q7TMB8|CYFP1_MOUSE Cytoplasmic FMR1-interacting protein 1 OS=Mus musculus GN=Cyfip1
PE=1 SV=1
Length = 1253
Score = 37.0 bits (84), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 53/120 (44%), Gaps = 1/120 (0%)
Query: 122 EELQKQVTVKSSVLEALLEITKFCDLYLMERVLDNESEKKVLLALETAGVFTSGGLVKDK 181
+ LQ+Q+ V S E L +I C Y R+ SEK +LL + G++ G V +
Sbjct: 222 QSLQQQLEVISGYEELLADIVNLCVDYYENRMYLTPSEKHMLLKVMGFGLYLMDGSVSNI 281
Query: 182 V-LFCSTEIGRTSFVRQLEPDWHIDTNPEIVSQLARFIKYQLHISPNRPERSAANVFSSP 240
L I + + + + ++ +LAR+IK H N+ + A+ SSP
Sbjct: 282 YKLDAKKRINLSKIDKYFKQLQVVPLFGDMQIELARYIKTSAHYEENKSRWTCASSSSSP 341
>sp|Q7L576|CYFP1_HUMAN Cytoplasmic FMR1-interacting protein 1 OS=Homo sapiens GN=CYFIP1
PE=1 SV=1
Length = 1253
Score = 35.4 bits (80), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 52/120 (43%), Gaps = 1/120 (0%)
Query: 122 EELQKQVTVKSSVLEALLEITKFCDLYLMERVLDNESEKKVLLALETAGVFTSGGLVKDK 181
+ LQ+Q+ V S E L +I C Y R+ SEK +LL + G++ G V +
Sbjct: 222 QSLQQQLEVISGYEELLADIVNLCVDYYENRMYLTPSEKHMLLKVMGFGLYLMDGSVSNI 281
Query: 182 V-LFCSTEIGRTSFVRQLEPDWHIDTNPEIVSQLARFIKYQLHISPNRPERSAANVFSSP 240
L I + + + + ++ +LAR+IK H N+ + + SSP
Sbjct: 282 YKLDAKKRINLSKIDKYFKQLQVVPLFGDMQIELARYIKTSAHYEENKSRWTCTSSGSSP 341
>sp|P07658|FDHF_ECOLI Formate dehydrogenase H OS=Escherichia coli (strain K12) GN=fdhF
PE=1 SV=2
Length = 715
Score = 33.5 bits (75), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 26/43 (60%)
Query: 183 LFCSTEIGRTSFVRQLEPDWHIDTNPEIVSQLARFIKYQLHIS 225
+F + + G F + +EP W + T+ +I+S++A + Y +H +
Sbjct: 454 VFTAADRGFQRFFKAVEPKWDLKTDWQIISEIATRMGYPMHYN 496
>sp|Q90YM8|CYFP1_DANRE Cytoplasmic FMR1-interacting protein 1 homolog OS=Danio rerio
GN=cyfip1 PE=2 SV=1
Length = 1253
Score = 33.1 bits (74), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 57/125 (45%), Gaps = 11/125 (8%)
Query: 122 EELQKQVTVKSSVLEALLEITKFCDLYLMERVLDNESEKKVLLALETAGVFTSGG----- 176
+ LQ+Q+ V + E L +I C Y ++ SE+ +LL + G++ G
Sbjct: 222 QSLQQQLEVINGYDELLADIVNLCVDYYENKMYLTPSERHMLLKVMGFGLYLMDGSNSNI 281
Query: 177 -LVKDKVLFCSTEIGRTSFVRQLEPDWHIDTNPEIVSQLARFIKYQLHISPNRPERSAAN 235
++ K T+I + F +QL+ + ++ +LAR+IK H N+ S +
Sbjct: 282 YKLEAKKRINLTKIDK--FFKQLQV---VPLFGDMQIELARYIKTSAHYEENKSRWSCTS 336
Query: 236 VFSSP 240
SSP
Sbjct: 337 TGSSP 341
>sp|P0ABU7|EXBB_ECOLI Biopolymer transport protein ExbB OS=Escherichia coli (strain
K12) GN=exbB PE=1 SV=1
Length = 244
Score = 30.8 bits (68), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Query: 22 GLALAIVFTWRMFRSPGAP---QRRQPKRQAPSTSNSVGSTQANATSTPFGASSSSEDLR 78
GL LA V TW +F S Q+R+ KR+ + + QAN + FG+ S S L
Sbjct: 29 GLILASVVTWAIFFSKSVEFFNQKRRLKREQQLLAEARSLNQANDIAADFGSKSLSLHLL 88
Query: 79 TQIADAL 85
+ + L
Sbjct: 89 NEAQNEL 95
>sp|P0ABU8|EXBB_ECO57 Biopolymer transport protein ExbB OS=Escherichia coli O157:H7
GN=exbB PE=3 SV=1
Length = 244
Score = 30.8 bits (68), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Query: 22 GLALAIVFTWRMFRSPGAP---QRRQPKRQAPSTSNSVGSTQANATSTPFGASSSSEDLR 78
GL LA V TW +F S Q+R+ KR+ + + QAN + FG+ S S L
Sbjct: 29 GLILASVVTWAIFFSKSVEFFNQKRRLKREQQLLAEARSLNQANDIAADFGSKSLSLHLL 88
Query: 79 TQIADAL 85
+ + L
Sbjct: 89 NEAQNEL 95
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.132 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,082,379
Number of Sequences: 539616
Number of extensions: 3278562
Number of successful extensions: 11894
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 11877
Number of HSP's gapped (non-prelim): 35
length of query: 249
length of database: 191,569,459
effective HSP length: 115
effective length of query: 134
effective length of database: 129,513,619
effective search space: 17354824946
effective search space used: 17354824946
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)