Query 025704
Match_columns 249
No_of_seqs 56 out of 58
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 15:46:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025704.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025704hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2y9m_B Peroxisome assembly pro 93.1 0.011 3.6E-07 49.0 -1.2 48 178-225 61-119 (130)
2 2l2t_A Receptor tyrosine-prote 81.5 1.5 5.3E-05 29.9 3.6 21 16-36 16-36 (44)
3 2ks1_B Epidermal growth factor 80.5 1.7 5.9E-05 29.6 3.6 21 16-36 17-37 (44)
4 3ks6_A Glycerophosphoryl diest 59.7 12 0.0004 31.8 4.9 63 136-205 89-158 (250)
5 3ch0_A Glycerophosphodiester p 54.5 11 0.00039 31.7 4.0 52 146-204 130-193 (272)
6 2o55_A Putative glycerophospho 53.7 13 0.00046 31.2 4.3 62 136-204 96-166 (258)
7 2k1k_A Ephrin type-A receptor 53.4 10 0.00036 24.8 2.8 16 13-28 6-21 (38)
8 2rbg_A Putative uncharacterize 53.2 20 0.00068 29.4 5.0 71 99-189 28-98 (126)
9 2pz0_A Glycerophosphoryl diest 48.0 14 0.0005 31.0 3.6 62 135-203 102-168 (252)
10 3no3_A Glycerophosphodiester p 46.6 19 0.00065 30.2 4.1 81 116-204 63-155 (238)
11 2oog_A Glycerophosphoryl diest 44.7 8.1 0.00028 33.3 1.5 58 146-203 133-194 (287)
12 3qvq_A Phosphodiesterase OLEI0 43.2 18 0.00061 30.6 3.4 64 135-204 100-168 (252)
13 3l12_A Putative glycerophospho 43.0 26 0.00088 30.5 4.5 52 146-204 143-205 (313)
14 4gyw_A UDP-N-acetylglucosamine 37.1 43 0.0015 32.9 5.5 98 125-230 530-635 (723)
15 2fpr_A Histidine biosynthesis 36.7 1.2E+02 0.0042 23.4 7.2 78 102-185 12-104 (176)
16 1o1z_A GDPD, glycerophosphodie 35.3 39 0.0013 28.3 4.3 72 117-203 75-147 (234)
17 1vd6_A Glycerophosphoryl diest 34.0 25 0.00085 29.0 2.8 76 116-202 64-145 (224)
18 2knc_B Integrin beta-3; transm 31.3 30 0.001 25.7 2.6 21 15-35 16-36 (79)
19 2nzc_A Hypothetical protein; s 31.3 33 0.0011 26.1 2.9 64 145-221 5-72 (86)
20 2k9j_B Integrin beta-3; transm 26.5 46 0.0016 22.1 2.6 19 16-34 16-34 (43)
21 3ef0_A RNA polymerase II subun 25.5 77 0.0026 29.1 4.8 89 127-227 73-169 (372)
22 2kxa_A Haemagglutinin HA2 chai 24.7 48 0.0016 21.1 2.2 21 17-37 3-27 (30)
23 2obb_A Hypothetical protein; s 24.6 2.6E+02 0.0089 22.1 7.4 104 105-218 4-117 (142)
24 2otd_A Glycerophosphodiester p 24.3 72 0.0025 26.5 4.0 63 135-203 97-164 (247)
25 3ef1_A RNA polymerase II subun 23.7 74 0.0025 30.3 4.4 89 128-227 82-177 (442)
26 2gmw_A D,D-heptose 1,7-bisphos 21.1 1.5E+02 0.0052 23.3 5.3 64 105-171 26-104 (211)
27 1pwa_A FGF-19, fibroblast grow 20.4 39 0.0013 28.2 1.6 33 175-207 5-37 (162)
No 1
>2y9m_B Peroxisome assembly protein 22; ligase-transport protein complex, ubiquitin conjugating ENZY complex, peroxisomal protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9o_B 2y9p_B
Probab=93.11 E-value=0.011 Score=48.97 Aligned_cols=48 Identities=23% Similarity=0.377 Sum_probs=39.4
Q ss_pred ccceEEeeccccCcchheeecccceeecCCH-----------HHHHHHHhhccceeeec
Q 025704 178 VKDKVLFCSTEIGRTSFVRQLEPDWHIDTNP-----------EIVSQLARFIKYQLHIS 225 (249)
Q Consensus 178 ~rhKVLFCST~~Gr~sfVRQLeP~lHIDtd~-----------~vv~~L~rfVp~lv~I~ 225 (249)
+.||||.|+|.+|+-+.+|+|+|+..+=-.. .+-..|.|||..++-+.
T Consensus 61 ~nyKIi~Csn~qG~ws~vK~Lkk~~LL~cSdDl~~~~g~~~~~vP~Dl~rfVk~Ivn~D 119 (130)
T 2y9m_B 61 NEHKIIYCDSMDGLWSCVRRLGKFQCILNSRDFTSSGGSDAAVVPEDIGRFVKFVVDSD 119 (130)
T ss_dssp CGGGEEEESCHHHHHHHHHHHCCSEEEECGGGTC-------CCSCTTGGGTCSEEEECC
T ss_pred CcceEEEeccHHHHHHHHHhcCCceEEEechhhccccCcCcccCchHHHHHHHHHcccC
Confidence 4699999999999999999999999982221 34567899999988765
No 2
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=81.53 E-value=1.5 Score=29.92 Aligned_cols=21 Identities=14% Similarity=0.064 Sum_probs=15.8
Q ss_pred hhhHHHHHHHHHHHHHHhhcC
Q 025704 16 SVGAIAGLALAIVFTWRMFRS 36 (249)
Q Consensus 16 s~~~~ag~a~a~v~~w~~lr~ 36 (249)
=+|+++++++.....|.++|.
T Consensus 16 VVgGv~~v~ii~~~~~~~~RR 36 (44)
T 2l2t_A 16 VIGGLFILVIVGLTFAVYVRR 36 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred ehHHHHHHHHHHHHHHHHhhh
Confidence 367778888777777888885
No 3
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=80.45 E-value=1.7 Score=29.56 Aligned_cols=21 Identities=24% Similarity=0.154 Sum_probs=15.9
Q ss_pred hhhHHHHHHHHHHHHHHhhcC
Q 025704 16 SVGAIAGLALAIVFTWRMFRS 36 (249)
Q Consensus 16 s~~~~ag~a~a~v~~w~~lr~ 36 (249)
=+|+++++++.+...|.++|-
T Consensus 17 VVgGv~~~~ii~~~~~~~~RR 37 (44)
T 2ks1_B 17 MVGALLLLLVVALGIGLFMRR 37 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHhhh
Confidence 467788888877777888884
No 4
>3ks6_A Glycerophosphoryl diester phosphodiesterase; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.80A {Agrobacterium tumefaciens str} PDB: 3ks5_A*
Probab=59.65 E-value=12 Score=31.76 Aligned_cols=63 Identities=11% Similarity=0.029 Sum_probs=48.2
Q ss_pred HHHHHHhhcCceEEEEEeeCh-------hhHHHHHHHHHHcCCcCCCCcccceEEeeccccCcchheeecccceeec
Q 025704 136 EALLEITKFCDLYLMERVLDN-------ESEKKVLLALETAGVFTSGGLVKDKVLFCSTEIGRTSFVRQLEPDWHID 205 (249)
Q Consensus 136 e~LleLak~~DvYLm~~V~dD-------~eE~~Vl~lLe~~GlF~~gGL~rhKVLFCST~~Gr~sfVRQLeP~lHID 205 (249)
+-++++.+..+++|+.-++++ .-++.+.++++++|+ .++++|.|-.......+|++.|.+.+-
T Consensus 89 ~evl~~~~~~~~~l~iEiK~~~~~~~~~~~~~~v~~~l~~~~~-------~~~v~~~SF~~~~l~~~~~~~p~~~~~ 158 (250)
T 3ks6_A 89 EELCALYVDSHVNFRCEIKPGVDGLPYEGFVALVIAGLERHSM-------LERTTFSSFLLASMDELWKATTRPRLW 158 (250)
T ss_dssp HHHHHHHTTCSCEEEEEECCCTTSCCCTTHHHHHHHHHHHTTC-------GGGEEEEESCHHHHHHHHHHCCSCEEE
T ss_pred HHHHHHHhccCcEEEEEeCCCcccCcchHHHHHHHHHHHhcCC-------CCCEEEEeCCHHHHHHHHHHCCCCcEE
Confidence 334455554679999999983 347889999999654 268999999888888999999987653
No 5
>3ch0_A Glycerophosphodiester phosphodiesterase; YP_677622.1, glycerophosphoryl diester phosphodiesterase, ST genomics; HET: MSE CIT GOL; 1.50A {Cytophaga hutchinsonii atcc 33406}
Probab=54.55 E-value=11 Score=31.72 Aligned_cols=52 Identities=12% Similarity=0.213 Sum_probs=39.8
Q ss_pred ceEEEEEeeChhh------------HHHHHHHHHHcCCcCCCCcccceEEeeccccCcchheeecccceee
Q 025704 146 DLYLMERVLDNES------------EKKVLLALETAGVFTSGGLVKDKVLFCSTEIGRTSFVRQLEPDWHI 204 (249)
Q Consensus 146 DvYLm~~V~dD~e------------E~~Vl~lLe~~GlF~~gGL~rhKVLFCST~~Gr~sfVRQLeP~lHI 204 (249)
++.|..-++++.. ++.+++++++.|. .++|+|.|-.-.....+|++.|.+.+
T Consensus 130 ~~~l~iEiK~~~~~~~~~~~~~~~~~~~v~~~l~~~~~-------~~~v~i~Sf~~~~l~~~~~~~p~~~~ 193 (272)
T 3ch0_A 130 KIQYNGEIKSTVEGDNIDHPNIALFCDLVVAEIKKAHI-------TDRFTLQSFDVRALEYMHSQYPDIKL 193 (272)
T ss_dssp SCEEEEEECCCGGGBTTTBCCHHHHHHHHHHHHHHTTC-------GGGEEEEESCHHHHHHHHHHCTTSEE
T ss_pred CceEEEEECCCcCcccccCccHHHHHHHHHHHHHHcCC-------CCcEEEEeCCHHHHHHHHHHCCCCcE
Confidence 7888888887653 5788899988643 26899999887778888888887543
No 6
>2o55_A Putative glycerophosphodiester phosphodiesterase; beta barrel, structural genomics, protein structure initiati 2; 2.81A {Galdieria sulphuraria}
Probab=53.69 E-value=13 Score=31.22 Aligned_cols=62 Identities=24% Similarity=0.352 Sum_probs=44.3
Q ss_pred HHHHHHhhcC--ceEEEEEeeChh-------hHHHHHHHHHHcCCcCCCCcccceEEeeccccCcchheeecccceee
Q 025704 136 EALLEITKFC--DLYLMERVLDNE-------SEKKVLLALETAGVFTSGGLVKDKVLFCSTEIGRTSFVRQLEPDWHI 204 (249)
Q Consensus 136 e~LleLak~~--DvYLm~~V~dD~-------eE~~Vl~lLe~~GlF~~gGL~rhKVLFCST~~Gr~sfVRQLeP~lHI 204 (249)
+-++++.+.. +++|+.-++++. -++.++++++++|+ .++|+|+|-.-.....+|++.|.+.+
T Consensus 96 ~evl~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~v~~~l~~~~~-------~~~v~i~Sf~~~~l~~~~~~~p~~~~ 166 (258)
T 2o55_A 96 EELFVAIEEQKFNLKLNLELKGEEWKRKESGDHQRLLLLVEKYHM-------QERVDYCSFHHEALAHLKALCPDVKI 166 (258)
T ss_dssp HHHHHHHHHSCSCCEEEEEECCSSSSSTTSSHHHHHHHHHHTTTC-------GGGEEEEESSHHHHHHHHHHCTTCEE
T ss_pred HHHHHHhhhhcCceEEEEEEccCCccccchHHHHHHHHHHHHcCC-------CCCEEEEeCCHHHHHHHHHHCCCCcE
Confidence 3344455544 788888888754 46788999988643 26899998877777778888887643
No 7
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=53.36 E-value=10 Score=24.79 Aligned_cols=16 Identities=13% Similarity=0.322 Sum_probs=9.5
Q ss_pred CCchhhHHHHHHHHHH
Q 025704 13 DSRSVGAIAGLALAIV 28 (249)
Q Consensus 13 ~~~s~~~~ag~a~a~v 28 (249)
+..|-|+|||..+..+
T Consensus 6 ~~ls~GaIAGiVvG~v 21 (38)
T 2k1k_A 6 RGLTGGEIVAVIFGLL 21 (38)
T ss_dssp TTCCHHHHHHHHHHHH
T ss_pred CCCCCCceeeeehHHH
Confidence 3456777777655443
No 8
>2rbg_A Putative uncharacterized protein ST0493; hypothetical protein, structural genomics, unknown function, NPPSFA; 1.75A {Sulfolobus tokodaii}
Probab=53.18 E-value=20 Score=29.35 Aligned_cols=71 Identities=24% Similarity=0.315 Sum_probs=41.3
Q ss_pred HHhcCceeEEEeecceeeccCChhhhhccceeehhHHHHHHHHhhcCceEEEEEeeChhhHHHHHHHHHHcCCcCCCCcc
Q 025704 99 QKLSEGRKVTCRLLGVILEESCPEELQKQVTVKSSVLEALLEITKFCDLYLMERVLDNESEKKVLLALETAGVFTSGGLV 178 (249)
Q Consensus 99 ~kl~~gRkvTis~~gvvl~e~sp~el~~~a~v~esa~e~LleLak~~DvYLm~~V~dD~eE~~Vl~lLe~~GlF~~gGL~ 178 (249)
-|++|+||++|-...=+ +...+..+++|+|++=-.. .+||..+ ..+|-+++++=+.++ +..|+
T Consensus 28 ~R~~GskKvviNvis~~----------~y~e~v~~~REAiLDNIDl-G~el~~W--Kp~eVdkm~~k~~q~---~~dGl- 90 (126)
T 2rbg_A 28 VRSSGSKKTTINVFTEI----------QYQELVTLIREALLENIDI-GYELFLW--KKNEVDIFLKNLEKS---EVDGL- 90 (126)
T ss_dssp HHHHTCSEEEEEEECSS----------CHHHHHHHTHHHHHHTTTS-EEEEEEE--CGGGHHHHHHHHTTC---CCCEE-
T ss_pred HHhcCCceEEEEEecCC----------cHHHHHHHHHHHHHhcccc-ceEEEEe--CHHHHHHHHHHHHHh---CCCce-
Confidence 38999999998655333 4556777888888763221 2344333 444444555444443 22244
Q ss_pred cceEEeecccc
Q 025704 179 KDKVLFCSTEI 189 (249)
Q Consensus 179 rhKVLFCST~~ 189 (249)
+.||+-++
T Consensus 91 ---~iYCDdeN 98 (126)
T 2rbg_A 91 ---LVYCDDEN 98 (126)
T ss_dssp ---EEEECGGG
T ss_pred ---EEEeCCCc
Confidence 67887554
No 9
>2pz0_A Glycerophosphoryl diester phosphodiesterase; glycerophosphodiester phosphodiesterase, T. tengcongensis; 1.91A {Thermoanaerobacter tengcongensis}
Probab=48.02 E-value=14 Score=31.03 Aligned_cols=62 Identities=16% Similarity=0.215 Sum_probs=43.9
Q ss_pred HHHHHHHhhcCceEEEEEeeChh-----hHHHHHHHHHHcCCcCCCCcccceEEeeccccCcchheeeccccee
Q 025704 135 LEALLEITKFCDLYLMERVLDNE-----SEKKVLLALETAGVFTSGGLVKDKVLFCSTEIGRTSFVRQLEPDWH 203 (249)
Q Consensus 135 ~e~LleLak~~DvYLm~~V~dD~-----eE~~Vl~lLe~~GlF~~gGL~rhKVLFCST~~Gr~sfVRQLeP~lH 203 (249)
++-++++.+..++.|+.-++++. -++.+.++++++|+ .++|+|+|-.......+|++.|.+.
T Consensus 102 L~evL~~~~~~~~~l~iEiK~~~~~~~~~~~~v~~~l~~~~~-------~~~vii~SF~~~~l~~~~~~~p~~~ 168 (252)
T 2pz0_A 102 LYEVFELIGDKDFLVNIEIKSGIVLYPGIEEKLIKAIKEYNF-------EERVIISSFNHYSLRDVKKMAPHLK 168 (252)
T ss_dssp HHHHHHHHTTSCCEEEEEECCSSCCCTTHHHHHHHHHHHTTC-------TTTEEEEESBHHHHHHHHHHCTTSE
T ss_pred HHHHHHHhhhcCCeEEEEeCCCCcccHHHHHHHHHHHHhcCC-------CCCEEEEeCCHHHHHHHHHHCCCCC
Confidence 33444555556788888888764 34788999998653 2579998877777777888888653
No 10
>3no3_A Glycerophosphodiester phosphodiesterase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.89A {Parabacteroides distasonis} SCOP: c.1.18.0
Probab=46.57 E-value=19 Score=30.24 Aligned_cols=81 Identities=10% Similarity=0.137 Sum_probs=53.3
Q ss_pred eccCChhhhhc----cceeehhHHHHHHHHhhcC-ceEEEEEeeChhh-------HHHHHHHHHHcCCcCCCCcccceEE
Q 025704 116 LEESCPEELQK----QVTVKSSVLEALLEITKFC-DLYLMERVLDNES-------EKKVLLALETAGVFTSGGLVKDKVL 183 (249)
Q Consensus 116 l~e~sp~el~~----~a~v~esa~e~LleLak~~-DvYLm~~V~dD~e-------E~~Vl~lLe~~GlF~~gGL~rhKVL 183 (249)
+++-+.+||+. +..-.+.--|+ +++.+.. +++|+.-++.+.. ++.+.++++++|+ .++++
T Consensus 63 v~~~t~~el~~l~~~~~~~iptL~ev-l~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~v~~~l~~~~~-------~~~v~ 134 (238)
T 3no3_A 63 IQSCTYDELKDLQLSNGEKLPTLEQY-LKRAKKLKNIRLIFELKSHDTPERNRDAARLSVQMVKRMKL-------AKRTD 134 (238)
T ss_dssp GGGSCHHHHTTCBCTTSCBCCBHHHH-HHHHHHCTTCEEEEEECCCSSHHHHHHHHHHHHHHHHHTTC-------GGGEE
T ss_pred hHhCCHHHHhhCCCCCCCcCCcHHHH-HHHHhhcCCceEEEEeCCCCCcchhHHHHHHHHHHHHHcCC-------cCCEE
Confidence 45556666653 12223333344 3444444 7899999987642 3677888888643 26899
Q ss_pred eeccccCcchheeecccceee
Q 025704 184 FCSTEIGRTSFVRQLEPDWHI 204 (249)
Q Consensus 184 FCST~~Gr~sfVRQLeP~lHI 204 (249)
|+|-.......+|++.|.+.+
T Consensus 135 ~~Sf~~~~l~~~~~~~p~~~~ 155 (238)
T 3no3_A 135 YISFNMDACKEFIRLCPKSEV 155 (238)
T ss_dssp EEESCHHHHHHHHHHCTTSCE
T ss_pred EEECCHHHHHHHHHHCCCCeE
Confidence 999888888889999998654
No 11
>2oog_A Glycerophosphoryl diester phosphodiesterase; phosphatase, ST genomics, protein structure initiative, PSI; 2.20A {Staphylococcus aureus subsp} PDB: 2p76_A
Probab=44.73 E-value=8.1 Score=33.26 Aligned_cols=58 Identities=10% Similarity=0.094 Sum_probs=40.2
Q ss_pred ceEEEEEeeChhh----HHHHHHHHHHcCCcCCCCcccceEEeeccccCcchheeeccccee
Q 025704 146 DLYLMERVLDNES----EKKVLLALETAGVFTSGGLVKDKVLFCSTEIGRTSFVRQLEPDWH 203 (249)
Q Consensus 146 DvYLm~~V~dD~e----E~~Vl~lLe~~GlF~~gGL~rhKVLFCST~~Gr~sfVRQLeP~lH 203 (249)
++.|..-++++.. ++.++++++++|..++.....++|+|.|-..-....+|++.|.+-
T Consensus 133 ~~~l~IEiK~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~vii~SF~~~~l~~~~~~~p~~~ 194 (287)
T 2oog_A 133 NANYYIETKSPDVYPGMEEQLLASLKKHHLLNNNKLKNGHVMIQSFSDESLKKIHRQNKHVP 194 (287)
T ss_dssp TSCEEEECCCTTTSTTHHHHHHHHHHHTTCSSHHHHHTTSEEEEESCHHHHHHHHHHCTTSC
T ss_pred CceEEEEECCCCCcchHHHHHHHHHHHcCCcccccCCCCCEEEEeCCHHHHHHHHHhCCCCc
Confidence 5667777776532 478999999987654222235889999877666667788877653
No 12
>3qvq_A Phosphodiesterase OLEI02445; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta hydrolase, hydrolase; HET: MSE G3P; 1.60A {Oleispira antarctica}
Probab=43.17 E-value=18 Score=30.55 Aligned_cols=64 Identities=16% Similarity=0.017 Sum_probs=44.5
Q ss_pred HHHHHHHhhcCceEEEEEeeChhh-----HHHHHHHHHHcCCcCCCCcccceEEeeccccCcchheeecccceee
Q 025704 135 LEALLEITKFCDLYLMERVLDNES-----EKKVLLALETAGVFTSGGLVKDKVLFCSTEIGRTSFVRQLEPDWHI 204 (249)
Q Consensus 135 ~e~LleLak~~DvYLm~~V~dD~e-----E~~Vl~lLe~~GlF~~gGL~rhKVLFCST~~Gr~sfVRQLeP~lHI 204 (249)
++-++++.+..++.|+.-++++.. ++.+.+++++.+. ..++|+|+|=.......+|++.|.+.+
T Consensus 100 L~evl~~~~~~~~~l~iEiK~~~~~~~~~~~~v~~~l~~~~~------~~~~vii~SF~~~~l~~~~~~~p~~~~ 168 (252)
T 3qvq_A 100 LLEAIEVISQYGMGLNLELKPCEGLEEETIAASVEVLKQHWP------QDLPLLFSSFNYFALVSAKALWPEIAR 168 (252)
T ss_dssp HHHHHHHHHHTTCEEEEEECCCTTCHHHHHHHHHHHHHHHSC------TTSCEEEEESCHHHHHHHHHHCTTSCE
T ss_pred HHHHHHHHhccCcEEEEEecCCCCccHHHHHHHHHHHHHhCc------ccCCEEEEeCCHHHHHHHHHHCCCCcE
Confidence 334444555567888889986532 2456777777542 236899999988888889999888654
No 13
>3l12_A Putative glycerophosphoryl diester phosphodiester; struct genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.60A {Silicibacter pomeroyi}
Probab=42.99 E-value=26 Score=30.53 Aligned_cols=52 Identities=15% Similarity=0.181 Sum_probs=40.7
Q ss_pred ceEEEEEeeChh-----------hHHHHHHHHHHcCCcCCCCcccceEEeeccccCcchheeecccceee
Q 025704 146 DLYLMERVLDNE-----------SEKKVLLALETAGVFTSGGLVKDKVLFCSTEIGRTSFVRQLEPDWHI 204 (249)
Q Consensus 146 DvYLm~~V~dD~-----------eE~~Vl~lLe~~GlF~~gGL~rhKVLFCST~~Gr~sfVRQLeP~lHI 204 (249)
++.|..-++++. -++.++++++++|+ .++|+|.|-.......+|++.|.+.+
T Consensus 143 ~~~l~IEiK~~~~~~~~~~~~~~~~~~v~~~l~~~~~-------~~~v~i~SF~~~~l~~~~~~~p~~~~ 205 (313)
T 3l12_A 143 APYLLLELKSDPALMHDHAARAEMVAAVLADVRRYRM-------EPRTVMHSFDWALLGECRRQAPDLPT 205 (313)
T ss_dssp CCEEEEEECCCGGGTTCHHHHHHHHHHHHHHHHHTTC-------GGGEEEEESCHHHHHHHHHHCTTSCE
T ss_pred CceEEEEEccCCccccccccHHHHHHHHHHHHHHcCC-------CCCEEEEcCCHHHHHHHHHHCCCCcE
Confidence 788888898863 25778888888654 26899999988888888998887543
No 14
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=37.06 E-value=43 Score=32.89 Aligned_cols=98 Identities=15% Similarity=0.136 Sum_probs=75.7
Q ss_pred hccceeehhHHHHHHHHhhc---CceEEEEEeeChhhHHHHHHHHHHcCCcCCCCcccceEEeeccccCcchheeecccc
Q 025704 125 QKQVTVKSSVLEALLEITKF---CDLYLMERVLDNESEKKVLLALETAGVFTSGGLVKDKVLFCSTEIGRTSFVRQLEPD 201 (249)
Q Consensus 125 ~~~a~v~esa~e~LleLak~---~DvYLm~~V~dD~eE~~Vl~lLe~~GlF~~gGL~rhKVLFCST~~Gr~sfVRQLeP~ 201 (249)
...+++.+++.++..+|.+. +-|.|+. .+...++++...+++ .|+..+||.|.....-..++.|.-.-|
T Consensus 530 N~~~Ki~p~~~~~W~~IL~~vP~S~L~Ll~--~~~~~~~~l~~~~~~------~gi~~~r~~f~~~~~~~~~l~~~~~~D 601 (723)
T 4gyw_A 530 NQLYKIDPSTLQMWANILKRVPNSVLWLLR--FPAVGEPNIQQYAQN------MGLPQNRIIFSPVAPKEEHVRRGQLAD 601 (723)
T ss_dssp SCGGGCCHHHHHHHHHHHHHCSSEEEEEEE--TTGGGHHHHHHHHHH------TTCCGGGEEEEECCCHHHHHHHGGGCS
T ss_pred CccccCCHHHHHHHHHHHHhCCCCeEEEEe--CcHHHHHHHHHHHHh------cCCCcCeEEECCCCCHHHHHHHhCCCe
Confidence 35678899999999999886 4555654 456677888888877 377889999998877778888988999
Q ss_pred eeecC-----CHHHHHHHHhhccceeeecCCCCC
Q 025704 202 WHIDT-----NPEIVSQLARFIKYQLHISPNRPE 230 (249)
Q Consensus 202 lHIDt-----d~~vv~~L~rfVp~lv~I~~~~~~ 230 (249)
+-+|| .-...+.|--=||-+-+.+..-.+
T Consensus 602 i~LDt~p~~g~tT~~eal~~GvPvvt~~g~~~~s 635 (723)
T 4gyw_A 602 VCLDTPLCNGHTTGMDVLWAGTPMVTMPGETLAS 635 (723)
T ss_dssp EEECCSSSCCSHHHHHHHHTTCCEEBCCCSSGGG
T ss_pred EEeCCCCcCCHHHHHHHHHcCCCEEEccCCCccH
Confidence 99995 456777888888887776554444
No 15
>2fpr_A Histidine biosynthesis bifunctional protein HISB; histidinola phosphate phosphatase, bifunctional enzyme structural genomics; 1.70A {Escherichia coli} SCOP: c.108.1.19 PDB: 2fps_A 2fpu_A* 2fpx_A 2fpw_A*
Probab=36.66 E-value=1.2e+02 Score=23.39 Aligned_cols=78 Identities=18% Similarity=0.284 Sum_probs=50.1
Q ss_pred cCceeEEEeecceeeccCC---hhhhhccceeehhHHHHHHHHhhc-CceEEEEEee-------C----hhhHHHHHHHH
Q 025704 102 SEGRKVTCRLLGVILEESC---PEELQKQVTVKSSVLEALLEITKF-CDLYLMERVL-------D----NESEKKVLLAL 166 (249)
Q Consensus 102 ~~gRkvTis~~gvvl~e~s---p~el~~~a~v~esa~e~LleLak~-~DvYLm~~V~-------d----D~eE~~Vl~lL 166 (249)
|+-|-+-+-..|++..+.+ +....+...+.+.+++.|.+|.+. ..+++++--. + +..+..+...|
T Consensus 12 ~~~k~~~~D~Dgtl~~~~~~~~~~~~~~~~~~~pg~~e~L~~L~~~G~~l~i~Tn~~~~~~~~~~~~~~~~~~~~~~~~l 91 (176)
T 2fpr_A 12 SSQKYLFIDRDGTLISEPPSDFQVDRFDKLAFEPGVIPQLLKLQKAGYKLVMITNQDGLGTQSFPQADFDGPHNLMMQIF 91 (176)
T ss_dssp -CCEEEEECSBTTTBCCC--CCCCCSGGGCCBCTTHHHHHHHHHHTTEEEEEEEECTTTTBTTBCHHHHHHHHHHHHHHH
T ss_pred CcCcEEEEeCCCCeEcCCCCCcCcCCHHHCcCCccHHHHHHHHHHCCCEEEEEECCccccccccchHhhhhhHHHHHHHH
Confidence 5567788888999876642 222235678899999999998765 4555554320 0 01567788888
Q ss_pred HHcCCcCCCCcccceEEee
Q 025704 167 ETAGVFTSGGLVKDKVLFC 185 (249)
Q Consensus 167 e~~GlF~~gGL~rhKVLFC 185 (249)
+..|+. -+.|++|
T Consensus 92 ~~~gl~------fd~v~~s 104 (176)
T 2fpr_A 92 TSQGVQ------FDEVLIC 104 (176)
T ss_dssp HHTTCC------EEEEEEE
T ss_pred HHcCCC------eeEEEEc
Confidence 887653 3556666
No 16
>1o1z_A GDPD, glycerophosphodiester phosphodiesterase; TM1621, glycerophosphodiester phosphodiesterase (GDPD), STRU genomics, JCSG, PSI; 1.60A {Thermotoga maritima} SCOP: c.1.18.3
Probab=35.31 E-value=39 Score=28.26 Aligned_cols=72 Identities=14% Similarity=0.164 Sum_probs=46.3
Q ss_pred ccCChhhhhcc-ceeehhHHHHHHHHhhcCceEEEEEeeChhhHHHHHHHHHHcCCcCCCCcccceEEeeccccCcchhe
Q 025704 117 EESCPEELQKQ-VTVKSSVLEALLEITKFCDLYLMERVLDNESEKKVLLALETAGVFTSGGLVKDKVLFCSTEIGRTSFV 195 (249)
Q Consensus 117 ~e~sp~el~~~-a~v~esa~e~LleLak~~DvYLm~~V~dD~eE~~Vl~lLe~~GlF~~gGL~rhKVLFCST~~Gr~sfV 195 (249)
.+-+.+||+.- ..-.+.--| ++++.+. .+.|..-++++.-++.+.+++++ .++|+|+|-. ..-+
T Consensus 75 ~d~T~~eL~~l~~~~iptL~e-vL~~~~~-~~~l~iEiK~~~~~~~v~~~l~~----------~~~vii~Sf~---l~~~ 139 (234)
T 1o1z_A 75 RDATVSELKELTDGKITTLKE-VFENVSD-DKIINIEIKEREAADAVLEISKK----------RKNLIFSSFD---LDLL 139 (234)
T ss_dssp GGSCHHHHHHHTTTCCCBHHH-HHHHSCT-TSEEEEEECCGGGHHHHHHHHTT----------CCSEEEEESC---HHHH
T ss_pred ccCcHHHHhcCCCCCCCCHHH-HHHhccc-CCeEEEEeCCccHHHHHHHHHhc----------cCCEEEEchh---HHHH
Confidence 44555555431 111223333 3334433 37777888988888889999876 3789998877 7778
Q ss_pred eeccccee
Q 025704 196 RQLEPDWH 203 (249)
Q Consensus 196 RQLeP~lH 203 (249)
|++.|.+-
T Consensus 140 ~~~~p~~~ 147 (234)
T 1o1z_A 140 DEKFKGTK 147 (234)
T ss_dssp HHHCTTSC
T ss_pred HhhCCCCc
Confidence 88888754
No 17
>1vd6_A Glycerophosphoryl diester phosphodiesterase; glycerophosphod phosphodiesterase, HB8; 1.30A {Thermus thermophilus} SCOP: c.1.18.3 PDB: 1v8e_A
Probab=33.97 E-value=25 Score=29.02 Aligned_cols=76 Identities=14% Similarity=0.121 Sum_probs=45.5
Q ss_pred eccCChhhhhccceeehhHHHHHHHHhh-cCceEEEEEeeChhh-----HHHHHHHHHHcCCcCCCCcccceEEeecccc
Q 025704 116 LEESCPEELQKQVTVKSSVLEALLEITK-FCDLYLMERVLDNES-----EKKVLLALETAGVFTSGGLVKDKVLFCSTEI 189 (249)
Q Consensus 116 l~e~sp~el~~~a~v~esa~e~LleLak-~~DvYLm~~V~dD~e-----E~~Vl~lLe~~GlF~~gGL~rhKVLFCST~~ 189 (249)
+.+-+.+||+.--.-.+ .++-++++.+ ..+++|+.-++++.. ++.+.+++++ .++|+|.|-.-
T Consensus 64 v~~~t~~eL~~l~~~ip-tL~evl~~~~~~~~~~l~iEiK~~~~~~~~~~~~v~~~l~~----------~~~v~i~Sf~~ 132 (224)
T 1vd6_A 64 VFQVDYADLKAQEPDLP-RLEEVLALKEAFPQAVFNVELKSFPGLGEEAARRLAALLRG----------REGVWVSSFDP 132 (224)
T ss_dssp GGGSCHHHHHHHSTTCC-BHHHHHGGGGTCTTCEEEEEECCCTTSHHHHHHHHHHHTTT----------CSSEEEEESCH
T ss_pred hhhCCHHHHHhcCCCCC-CHHHHHHhhhccCCceEEEEECCCCCccHHHHHHHHHHHhc----------CCcEEEEeCCH
Confidence 45556666653211112 2344455555 567888888887653 4556666654 47888888766
Q ss_pred Ccchheeecccce
Q 025704 190 GRTSFVRQLEPDW 202 (249)
Q Consensus 190 Gr~sfVRQLeP~l 202 (249)
.....+|++.|.+
T Consensus 133 ~~l~~~~~~~p~~ 145 (224)
T 1vd6_A 133 LALLALRKAAPGL 145 (224)
T ss_dssp HHHHHHHHHCTTS
T ss_pred HHHHHHHHHCCCC
Confidence 6666677776654
No 18
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=31.30 E-value=30 Score=25.67 Aligned_cols=21 Identities=29% Similarity=0.623 Sum_probs=15.3
Q ss_pred chhhHHHHHHHHHHHHHHhhc
Q 025704 15 RSVGAIAGLALAIVFTWRMFR 35 (249)
Q Consensus 15 ~s~~~~ag~a~a~v~~w~~lr 35 (249)
+.+|+|+.+.+.+++.||++.
T Consensus 16 gvi~gilliGllllliwk~~~ 36 (79)
T 2knc_B 16 SVMGAILLIGLAALLIWKLLI 36 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 356667767777889999765
No 19
>2nzc_A Hypothetical protein; sturctural genomics, TM1266, structural genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.95A {Thermotoga maritima} SCOP: d.58.18.14
Probab=31.27 E-value=33 Score=26.15 Aligned_cols=64 Identities=11% Similarity=0.094 Sum_probs=47.8
Q ss_pred CceEEEEEeeChhhHH--HHHHHHHHcCCcCCC--CcccceEEeeccccCcchheeecccceeecCCHHHHHHHHhhccc
Q 025704 145 CDLYLMERVLDNESEK--KVLLALETAGVFTSG--GLVKDKVLFCSTEIGRTSFVRQLEPDWHIDTNPEIVSQLARFIKY 220 (249)
Q Consensus 145 ~DvYLm~~V~dD~eE~--~Vl~lLe~~GlF~~g--GL~rhKVLFCST~~Gr~sfVRQLeP~lHIDtd~~vv~~L~rfVp~ 220 (249)
..+++|..+.+|-++. +|..+|-++|-+=.+ ||+-+. ...|-. .++||++.+.+..|+..+-+
T Consensus 5 ~ri~vigIiVe~r~~~a~kvn~iL~~yg~~I~gRmGiP~~~-----~~~~iI--------sl~v~~~~d~I~aL~gkLg~ 71 (86)
T 2nzc_A 5 KRFYILTIVVEDREKAYRQVNELLHNFSEDILLRVGYPVRE-----ENMAII--------FLVLKTDNDTIGALSGKLGQ 71 (86)
T ss_dssp CEEEEEEEEEESCHHHHHHHHHHHHHTGGGEEEEEEEEEGG-----GTEEEE--------EEEEEECHHHHHHHHHHHHT
T ss_pred eeEEEEEEEEeCchhhHHHHHHHHHhccCEEEEEcCCCcCc-----CCceEE--------EEEEECCHHHHHHHHHHhCC
Confidence 4689999988887763 699999998876654 666322 333332 48999999999999998876
Q ss_pred e
Q 025704 221 Q 221 (249)
Q Consensus 221 l 221 (249)
+
T Consensus 72 i 72 (86)
T 2nzc_A 72 I 72 (86)
T ss_dssp S
T ss_pred C
Confidence 4
No 20
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=26.50 E-value=46 Score=22.13 Aligned_cols=19 Identities=32% Similarity=0.733 Sum_probs=13.3
Q ss_pred hhhHHHHHHHHHHHHHHhh
Q 025704 16 SVGAIAGLALAIVFTWRMF 34 (249)
Q Consensus 16 s~~~~ag~a~a~v~~w~~l 34 (249)
.+|+++.+.+++...||++
T Consensus 16 vi~~ivliGl~lLliwk~~ 34 (43)
T 2k9j_B 16 VMGAILLIGLAALLIWKLL 34 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4566665666778889876
No 21
>3ef0_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, ALF4, transition state analog, cobalt, magnesium; 2.10A {Schizosaccharomyces pombe}
Probab=25.45 E-value=77 Score=29.14 Aligned_cols=89 Identities=16% Similarity=0.238 Sum_probs=55.8
Q ss_pred cceeehhHHHHHHHHhhcCceEEEEEeeChhhHHHHHHHHHHcC-CcCCCCcccceEEeeccccCcc-----h-h-eeec
Q 025704 127 QVTVKSSVLEALLEITKFCDLYLMERVLDNESEKKVLLALETAG-VFTSGGLVKDKVLFCSTEIGRT-----S-F-VRQL 198 (249)
Q Consensus 127 ~a~v~esa~e~LleLak~~DvYLm~~V~dD~eE~~Vl~lLe~~G-lF~~gGL~rhKVLFCST~~Gr~-----s-f-VRQL 198 (249)
....|+.+.+-|-++++.++|++.+ -....=-+.|++.|+-.| +|. ||++.+. +.|.. + + =|-+
T Consensus 73 ~v~~RPg~~eFL~~l~~~yeivI~T-as~~~yA~~vl~~LDp~~~~f~------~ri~sr~-~~g~~~~KdL~~L~~~dl 144 (372)
T 3ef0_A 73 YIKFRPGLAQFLQKISELYELHIYT-MGTKAYAKEVAKIIDPTGKLFQ------DRVLSRD-DSGSLAQKSLRRLFPCDT 144 (372)
T ss_dssp EEEECTTHHHHHHHHHTTEEEEEEC-SSCHHHHHHHHHHHCTTSCSSS------SCEECTT-TSSCSSCCCGGGTCSSCC
T ss_pred EEEECcCHHHHHHHHhcCcEEEEEe-CCcHHHHHHHHHHhccCCceee------eEEEEec-CCCCcceecHHHhcCCCC
Confidence 4556999999999999999988743 333333355566555444 343 6765433 23431 1 1 2455
Q ss_pred ccceeecCCHHHHHHHHhhccceeeecCC
Q 025704 199 EPDWHIDTNPEIVSQLARFIKYQLHISPN 227 (249)
Q Consensus 199 eP~lHIDtd~~vv~~L~rfVp~lv~I~~~ 227 (249)
+=-+-||.++.+-.. -||.+.|.|-
T Consensus 145 ~~viiiDd~~~~~~~----~pN~I~i~~~ 169 (372)
T 3ef0_A 145 SMVVVIDDRGDVWDW----NPNLIKVVPY 169 (372)
T ss_dssp TTEEEEESCSGGGTT----CTTEEECCCC
T ss_pred ceEEEEeCCHHHcCC----CCcEeeeCCc
Confidence 566888988875532 2799988865
No 22
>2kxa_A Haemagglutinin HA2 chain peptide; fusion peptide, viral protein, immune system; NMR {Influenza a virus}
Probab=24.71 E-value=48 Score=21.06 Aligned_cols=21 Identities=29% Similarity=0.407 Sum_probs=13.6
Q ss_pred hhHHHHHHH----HHHHHHHhhcCC
Q 025704 17 VGAIAGLAL----AIVFTWRMFRSP 37 (249)
Q Consensus 17 ~~~~ag~a~----a~v~~w~~lr~~ 37 (249)
+||||||.. .++-.|+=.|..
T Consensus 3 FGAIAGfieggW~gmi~gwyG~~h~ 27 (30)
T 2kxa_A 3 FGAIAGFIEGGWTGMIDGWYGSGKK 27 (30)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCC---
T ss_pred chhhhhhhhcCcccccccccceeec
Confidence 699999986 466677665543
No 23
>2obb_A Hypothetical protein; structural genomics, PSI-2, PR structure initiative, midwest center for structural genomic unknown function; 2.20A {Bacteroides thetaiotaomicron} SCOP: c.108.1.25
Probab=24.65 E-value=2.6e+02 Score=22.11 Aligned_cols=104 Identities=15% Similarity=0.098 Sum_probs=64.2
Q ss_pred eeEEEeecceeeccCChhhhhccceeehhHHHHHHHHhhcCceEEEEEeeChhhHHHHHHHHHHcCCcCCC-Ccc-cceE
Q 025704 105 RKVTCRLLGVILEESCPEELQKQVTVKSSVLEALLEITKFCDLYLMERVLDNESEKKVLLALETAGVFTSG-GLV-KDKV 182 (249)
Q Consensus 105 RkvTis~~gvvl~e~sp~el~~~a~v~esa~e~LleLak~~DvYLm~~V~dD~eE~~Vl~lLe~~GlF~~g-GL~-rhKV 182 (249)
+-+-+=+.|+++....++ -....++++++|.++-+.--.++++.-.+...-..+...|++.|+-... +.+ ++.+
T Consensus 4 k~i~~DlDGTL~~~~~~~----i~~~~~~~~~al~~l~~~G~~iii~TgR~~~~~~~~~~~l~~~gi~~~~I~~n~P~~~ 79 (142)
T 2obb_A 4 MTIAVDFDGTIVEHRYPR----IGEEIPFAVETLKLLQQEKHRLILWSVREGELLDEAIEWCRARGLEFYAANKDYPEEE 79 (142)
T ss_dssp CEEEECCBTTTBCSCTTS----CCCBCTTHHHHHHHHHHTTCEEEECCSCCHHHHHHHHHHHHTTTCCCSEESSSSTTC-
T ss_pred eEEEEECcCCCCCCCCcc----ccccCHHHHHHHHHHHHCCCEEEEEeCCCcccHHHHHHHHHHcCCCeEEEEcCCchhh
Confidence 456777889887743221 1124578999999997665566667666666667788888887664310 111 2222
Q ss_pred EeeccccCcchheeecccceeecCC--------HHHHHHHHhhc
Q 025704 183 LFCSTEIGRTSFVRQLEPDWHIDTN--------PEIVSQLARFI 218 (249)
Q Consensus 183 LFCST~~Gr~sfVRQLeP~lHIDtd--------~~vv~~L~rfV 218 (249)
.|| ...+|.+++++=||-. ++|.+.|....
T Consensus 80 ~~~------~~~~rK~~~~~fIDDR~~~~~~dw~~i~~~~~~~~ 117 (142)
T 2obb_A 80 RDH------QGFSRKLKADLFIDDRNVGGIPDWGIIYEMIKEKK 117 (142)
T ss_dssp --C------CSCCSSCCCSEEECTTSTTCCCCHHHHHHHHHHTC
T ss_pred hcc------hhhcCCcCCCEEeeccccCCCCCHHHHHHHHHhhh
Confidence 232 2467889999998833 46666666643
No 24
>2otd_A Glycerophosphodiester phosphodiesterase; structural genomics PSI-2, protein structure initiative, midwest center for STR genomics, hydrolase; 2.60A {Shigella flexneri}
Probab=24.27 E-value=72 Score=26.47 Aligned_cols=63 Identities=21% Similarity=0.184 Sum_probs=42.0
Q ss_pred HHHHHHHhhcCceEEEEEeeChh-----hHHHHHHHHHHcCCcCCCCcccceEEeeccccCcchheeeccccee
Q 025704 135 LEALLEITKFCDLYLMERVLDNE-----SEKKVLLALETAGVFTSGGLVKDKVLFCSTEIGRTSFVRQLEPDWH 203 (249)
Q Consensus 135 ~e~LleLak~~DvYLm~~V~dD~-----eE~~Vl~lLe~~GlF~~gGL~rhKVLFCST~~Gr~sfVRQLeP~lH 203 (249)
++-++++.+..++.|..-++++. -++.+.+++++.. .|.. +|+|+|-.-.....+|++.|.+.
T Consensus 97 L~evl~~~~~~~~~l~iEiK~~~~~~~~~~~~v~~~l~~~~----~~~~--~v~i~Sf~~~~l~~~~~~~p~~~ 164 (247)
T 2otd_A 97 LSQVAERCREHGMMANIEIKPTTGTGPLTGKMVALAARQLW----AGMT--PPLLSSFEIDALEAAQQAAPELP 164 (247)
T ss_dssp HHHHHHHHHHTTCEEEEEECCCTTCHHHHHHHHHHHHHHHT----TTSC--CCEEEESCHHHHHHHHHHCTTSC
T ss_pred HHHHHHHHHhcCCEEEEEECCCCCcchHHHHHHHHHHHHHh----cCcC--CEEEEcCCHHHHHHHHHHCCCCC
Confidence 33344555545788888888754 2467888887742 1333 89998887777777888888754
No 25
>3ef1_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, BEF3, acylphosphate analog, cobalt, magnesium; HET: BFD; 2.15A {Schizosaccharomyces pombe}
Probab=23.73 E-value=74 Score=30.33 Aligned_cols=89 Identities=17% Similarity=0.260 Sum_probs=57.6
Q ss_pred ceeehhHHHHHHHHhhcCceEEEEEeeChhhHHHHHHHHHHcCCcCCCCcccceEEeeccccCcc-----h--heeeccc
Q 025704 128 VTVKSSVLEALLEITKFCDLYLMERVLDNESEKKVLLALETAGVFTSGGLVKDKVLFCSTEIGRT-----S--FVRQLEP 200 (249)
Q Consensus 128 a~v~esa~e~LleLak~~DvYLm~~V~dD~eE~~Vl~lLe~~GlF~~gGL~rhKVLFCST~~Gr~-----s--fVRQLeP 200 (249)
...|+.+.+-|-++++.++|++.+ -....=-+.|++.|+-.| .+-.||++.... .|.. + |=|-|.=
T Consensus 82 V~~RPgl~eFL~~ls~~yEivIfT-as~~~YA~~Vl~~LDp~~-----~~f~~Rl~sRd~-cg~~~~KdL~~ll~rdl~~ 154 (442)
T 3ef1_A 82 IKFRPGLAQFLQKISELYELHIYT-MGTKAYAKEVAKIIDPTG-----KLFQDRVLSRDD-SGSLAQKSLRRLFPCDTSM 154 (442)
T ss_dssp EEECTTHHHHHHHHTTTEEEEEEC-SSCHHHHHHHHHHHCTTS-----TTTTTCEECTTT-SSCSSCCCGGGTCSSCCTT
T ss_pred EEeCCCHHHHHHHHhCCcEEEEEc-CCCHHHHHHHHHHhccCC-----ccccceEEEecC-CCCceeeehHHhcCCCcce
Confidence 456899999999999999998743 344444466666666544 133477764332 2321 1 1356666
Q ss_pred ceeecCCHHHHHHHHhhccceeeecCC
Q 025704 201 DWHIDTNPEIVSQLARFIKYQLHISPN 227 (249)
Q Consensus 201 ~lHIDtd~~vv~~L~rfVp~lv~I~~~ 227 (249)
.+=||.++.+-. +-||.+.|.+-
T Consensus 155 vvIIDd~p~~~~----~~pN~I~I~~~ 177 (442)
T 3ef1_A 155 VVVIDDRGDVWD----WNPNLIKVVPY 177 (442)
T ss_dssp EEEEESCSGGGT----TCTTEEECCCC
T ss_pred EEEEECCHHHhC----CCCCEEEcCCc
Confidence 788998887553 23799888865
No 26
>2gmw_A D,D-heptose 1,7-bisphosphate phosphatase; Zn-binding protein, hydrolase; 1.50A {Escherichia coli} SCOP: c.108.1.19 PDB: 3esq_A 3esr_A 3l1u_A 3l1v_A 3l8e_A 3l8f_A 3l8g_A*
Probab=21.11 E-value=1.5e+02 Score=23.34 Aligned_cols=64 Identities=14% Similarity=0.121 Sum_probs=43.3
Q ss_pred eeEEEeecceeeccCChhhhhccceeehhHHHHHHHHhhc-CceEEEEEeeChhh--------------HHHHHHHHHHc
Q 025704 105 RKVTCRLLGVILEESCPEELQKQVTVKSSVLEALLEITKF-CDLYLMERVLDNES--------------EKKVLLALETA 169 (249)
Q Consensus 105 RkvTis~~gvvl~e~sp~el~~~a~v~esa~e~LleLak~-~DvYLm~~V~dD~e--------------E~~Vl~lLe~~ 169 (249)
|-+-+-+.|++.....+.+..++....+.+.+.|.+|.+. ..+++++ +... ...+...|++.
T Consensus 26 k~v~~D~DGTL~~~~~~~~~~~~~~~~pg~~e~L~~L~~~G~~~~ivT---n~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 102 (211)
T 2gmw_A 26 PAIFLDRDGTINVDHGYVHEIDNFEFIDGVIDAMRELKKMGFALVVVT---NQSGIARGKFTEAQFETLTEWMDWSLADR 102 (211)
T ss_dssp CEEEECSBTTTBCCCSSCCSGGGCCBCTTHHHHHHHHHHTTCEEEEEE---ECTHHHHTSSCHHHHHHHHHHHHHHHHHT
T ss_pred CEEEEcCCCCeECCCCcccCcccCcCCcCHHHHHHHHHHCCCeEEEEE---CcCCcCCCccCHHHHHHHHHHHHHHHHHc
Confidence 4577888898876554444445678899999999998765 4555543 2222 46677788887
Q ss_pred CC
Q 025704 170 GV 171 (249)
Q Consensus 170 Gl 171 (249)
|+
T Consensus 103 gl 104 (211)
T 2gmw_A 103 DV 104 (211)
T ss_dssp TC
T ss_pred CC
Confidence 65
No 27
>1pwa_A FGF-19, fibroblast growth factor-19; beta trefoil, disulphide bonds, hormone-growth factor comple; 1.30A {Homo sapiens} SCOP: b.42.1.1
Probab=20.41 E-value=39 Score=28.16 Aligned_cols=33 Identities=21% Similarity=0.302 Sum_probs=28.3
Q ss_pred CCcccceEEeeccccCcchheeecccceeecCC
Q 025704 175 GGLVKDKVLFCSTEIGRTSFVRQLEPDWHIDTN 207 (249)
Q Consensus 175 gGL~rhKVLFCST~~Gr~sfVRQLeP~lHIDtd 207 (249)
||..|.+=|||.|.-|..++-=||.|+=+||+-
T Consensus 5 g~~~R~~~LY~~~~~g~~~~~LqI~~dG~V~Gt 37 (162)
T 1pwa_A 5 GDPIRLRHLYTSGPHGLSSCFLRIRADGVVDCA 37 (162)
T ss_dssp --CEEEEEEEECCTTSCCCEEEEECTTSBEEEE
T ss_pred CCceEEEEEEEccCCCCceeEEEECCCCcEeCC
Confidence 588999999999988999999999999999854
Done!