Query 025704
Match_columns 249
No_of_seqs 56 out of 58
Neff 3.5
Searched_HMMs 13730
Date Mon Mar 25 15:47:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025704.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/025704hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2o2xa1 c.108.1.19 (A:8-216) H 47.0 17 0.0013 28.1 5.9 75 109-189 28-114 (209)
2 d2fpwa1 c.108.1.19 (A:3-163) H 41.5 22 0.0016 26.4 5.5 78 107-190 5-97 (161)
3 d1xpja_ c.108.1.18 (A:) Hypoth 29.4 56 0.0041 23.8 6.0 72 105-184 2-85 (124)
4 d1sqga2 c.66.1.38 (A:145-428) 27.0 7.4 0.00054 31.9 0.5 65 108-172 180-252 (284)
5 d1ixka_ c.66.1.38 (A:) Hypothe 26.3 9.6 0.0007 31.8 1.1 63 108-170 194-264 (313)
6 d1zcca1 c.1.18.3 (A:1-240) Gly 24.0 35 0.0026 25.8 4.0 56 139-203 96-151 (240)
7 d1i36a2 c.2.1.6 (A:1-152) Cons 23.4 1E+02 0.0075 21.6 6.4 40 139-188 51-90 (152)
8 d2obba1 c.108.1.25 (A:1-122) H 23.3 1E+02 0.0073 22.1 6.4 70 106-185 2-71 (122)
9 d1vd6a1 c.1.18.3 (A:8-224) Put 22.5 42 0.003 24.3 4.0 60 137-203 77-139 (217)
10 d2nrka1 d.218.1.14 (A:4-170) H 20.5 63 0.0046 24.4 4.9 47 147-193 48-95 (167)
No 1
>d2o2xa1 c.108.1.19 (A:8-216) Hypothetical protein Mll2559 {Mesorhizobium loti [TaxId: 381]}
Probab=46.98 E-value=17 Score=28.13 Aligned_cols=75 Identities=19% Similarity=0.216 Sum_probs=46.6
Q ss_pred EeecceeeccCChhhhhccceeehhHHHHHHHHhhc-CceEEEEEee-------Ch----hhHHHHHHHHHHcCCcCCCC
Q 025704 109 CRLLGVILEESCPEELQKQVTVKSSVLEALLEITKF-CDLYLMERVL-------DN----ESEKKVLLALETAGVFTSGG 176 (249)
Q Consensus 109 is~~gvvl~e~sp~el~~~a~v~esa~e~LleLak~-~DvYLm~~V~-------dD----~eE~~Vl~lLe~~GlF~~gG 176 (249)
+=..|||..+..+-...+.+.+.+.+.|.|.+|.+. ..+++++--. +. .=.+.++..|++.|++-
T Consensus 28 ~DrDGtl~~~~~y~~~~~~~~l~pgv~e~L~~L~~~G~~l~IvTNQ~gi~~g~~~~~~~~~~~~~~~~~l~~~g~~~--- 104 (209)
T d2o2xa1 28 LDRDGTINVDTDYPSDPAEIVLRPQMLPAIATANRAGIPVVVVTNQSGIARGYFGWSAFAAVNGRVLELLREEGVFV--- 104 (209)
T ss_dssp ECSBTTTBCCCSCTTCGGGCCBCGGGHHHHHHHHHHTCCEEEEEECHHHHTTSCCHHHHHHHHHHHHHHHHHTTCCC---
T ss_pred EeCCCCeECCCCCCCCHHHeEecccHHHHHHHHHhhCCeEEEecccccchhhhhhhhhhhhhhhHHHHHhhhccccc---
Confidence 345677666544433335678999999999999775 5666655210 11 11245667777766554
Q ss_pred cccceEEeecccc
Q 025704 177 LVKDKVLFCSTEI 189 (249)
Q Consensus 177 L~rhKVLFCST~~ 189 (249)
..+.+|....
T Consensus 105 ---~~~~~~~~~~ 114 (209)
T d2o2xa1 105 ---DMVLACAYHE 114 (209)
T ss_dssp ---SEEEEECCCT
T ss_pred ---ceEEEecccc
Confidence 6788887543
No 2
>d2fpwa1 c.108.1.19 (A:3-163) Histidine biosynthesis bifunctional protein HisB, phosphatase domain {Escherichia coli [TaxId: 562]}
Probab=41.55 E-value=22 Score=26.38 Aligned_cols=78 Identities=15% Similarity=0.228 Sum_probs=46.0
Q ss_pred EEEeecceeeccCChhhh---hccceeehhHHHHHHHHhhc-CceEEEEEee-------ChhhHH----HHHHHHHHcCC
Q 025704 107 VTCRLLGVILEESCPEEL---QKQVTVKSSVLEALLEITKF-CDLYLMERVL-------DNESEK----KVLLALETAGV 171 (249)
Q Consensus 107 vTis~~gvvl~e~sp~el---~~~a~v~esa~e~LleLak~-~DvYLm~~V~-------dD~eE~----~Vl~lLe~~Gl 171 (249)
|=+=..||+.++.....- -++..+.+.++|.|.+|.+- +.+++++.-. +.++-. .++..|+..
T Consensus 5 i~~D~DGtL~~~~~~~~~~~~~~~~~~~pgv~e~L~~L~~~g~~l~i~TNq~~ia~~~~~~~~~~~~~~~l~~~l~~~-- 82 (161)
T d2fpwa1 5 LFIDRDGTLISEPPSDFQVDRFDKLAFEPGVIPQLLKLQKAGYKLVMITNQDGLGTQSFPQADFDGPHNLMMQIFTSQ-- 82 (161)
T ss_dssp EEECCBTTTBCCC--CCCCCSGGGCCBCTTHHHHHHHHHHTTEEEEEEEECTTTTSTTSCHHHHHHHHHHHHHHHHHT--
T ss_pred EEEeCCCCeEeeCCCCCccCCHHHceECccHHHHHHHHHHcCCceeeecccccchhHHHHHHHhhhhhhhhhhhcccc--
Confidence 334456777765532211 14568899999999999875 6666654311 112222 344555563
Q ss_pred cCCCCcccceEEeeccccC
Q 025704 172 FTSGGLVKDKVLFCSTEIG 190 (249)
Q Consensus 172 F~~gGL~rhKVLFCST~~G 190 (249)
|+..+.+.||....+
T Consensus 83 ----~~~~~~i~~~~~~~~ 97 (161)
T d2fpwa1 83 ----GVQFDEVLICPHLPA 97 (161)
T ss_dssp ----TCCEEEEEEECCCGG
T ss_pred ----ccccceeeecccccc
Confidence 556689999976544
No 3
>d1xpja_ c.108.1.18 (A:) Hypothetical protein VC0232 {Vibrio cholerae [TaxId: 666]}
Probab=29.42 E-value=56 Score=23.84 Aligned_cols=72 Identities=15% Similarity=0.220 Sum_probs=50.2
Q ss_pred eeEEEeecceeeccCChhhhhccceeehhHHHHHHHHhhc-CceEEEEEee-----------ChhhHHHHHHHHHHcCCc
Q 025704 105 RKVTCRLLGVILEESCPEELQKQVTVKSSVLEALLEITKF-CDLYLMERVL-----------DNESEKKVLLALETAGVF 172 (249)
Q Consensus 105 RkvTis~~gvvl~e~sp~el~~~a~v~esa~e~LleLak~-~DvYLm~~V~-----------dD~eE~~Vl~lLe~~GlF 172 (249)
++++|-+.|||.+....+ -.++.-.+.+++.|.+|-+. ..|++++-=. .+.-.+...+-|++.
T Consensus 2 K~i~~DiDGTI~~~~~~~--y~~~~P~~~~Ie~l~~l~~~G~~Iii~TaR~~~~~~~~~~~~~~~~~~~T~~wL~~~--- 76 (124)
T d1xpja_ 2 KKLIVDLDGTLTQANTSD--YRNVLPRLDVIEQLREYHQLGFEIVISTARNMRTYEGNVGKINIHTLPIITEWLDKH--- 76 (124)
T ss_dssp CEEEECSTTTTBCCCCSC--GGGCCBCHHHHHHHHHHHHTTCEEEEEECTTTTTTTTCHHHHHHHTHHHHHHHHHHT---
T ss_pred CEEEEeCCCCeECCCCCC--cCccCcCHHHHHHHHHHHHCCCEEEEEecCCccccCCcHHHHHHHHHHHHHHHHHHc---
Confidence 578999999998765432 25678899999999999544 6666655321 122345667777773
Q ss_pred CCCCcccceEEe
Q 025704 173 TSGGLVKDKVLF 184 (249)
Q Consensus 173 ~~gGL~rhKVLF 184 (249)
|++=|+++|
T Consensus 77 ---gI~Yd~Li~ 85 (124)
T d1xpja_ 77 ---QVPYDEILV 85 (124)
T ss_dssp ---TCCCSEEEE
T ss_pred ---CCCceEEEE
Confidence 677799988
No 4
>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=27.02 E-value=7.4 Score=31.92 Aligned_cols=65 Identities=20% Similarity=0.225 Sum_probs=42.4
Q ss_pred EEeecceee------ccCChhhhhccceeehhHHHHHHHHhhc--CceEEEEEeeChhhHHHHHHHHHHcCCc
Q 025704 108 TCRLLGVIL------EESCPEELQKQVTVKSSVLEALLEITKF--CDLYLMERVLDNESEKKVLLALETAGVF 172 (249)
Q Consensus 108 Tis~~gvvl------~e~sp~el~~~a~v~esa~e~LleLak~--~DvYLm~~V~dD~eE~~Vl~lLe~~GlF 172 (249)
-||-.|++- |..+++++.+........++...++.+. .=||--|.+...|.|++|..+|++..-|
T Consensus 180 PCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~ENE~vv~~~l~~~~~~ 252 (284)
T d1sqga2 180 PCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPEENSLQIKAFLQRTADA 252 (284)
T ss_dssp CCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCGGGTHHHHHHHHHHCTTC
T ss_pred cccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeecCchhhCHHHHHHHHHhCCCc
Confidence 467777762 2333444444444444444444444443 3689999999999999999999985444
No 5
>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=26.28 E-value=9.6 Score=31.79 Aligned_cols=63 Identities=21% Similarity=0.174 Sum_probs=41.7
Q ss_pred EEeeccee------eccCChhhhhccceeehhHHHHHHHHhhc--CceEEEEEeeChhhHHHHHHHHHHcC
Q 025704 108 TCRLLGVI------LEESCPEELQKQVTVKSSVLEALLEITKF--CDLYLMERVLDNESEKKVLLALETAG 170 (249)
Q Consensus 108 Tis~~gvv------l~e~sp~el~~~a~v~esa~e~LleLak~--~DvYLm~~V~dD~eE~~Vl~lLe~~G 170 (249)
-||-.|++ .|+.+++++.+.+......++.-+.+.|- .=||--|.+.-.|.|++|..+|++.+
T Consensus 194 PCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl~~eENE~VV~~~L~~~~ 264 (313)
T d1ixka_ 194 PCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPEENEFVIQWALDNFD 264 (313)
T ss_dssp CTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGGGTHHHHHHHHHHSS
T ss_pred ccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeeccCChHhHHHHHHHHHhcCC
Confidence 35666665 23344555555555555555555555554 35899999999999999999999854
No 6
>d1zcca1 c.1.18.3 (A:1-240) Glycerophosphodiester phosphodiesterase UgpQ {Agrobacterium tumefaciens [TaxId: 358]}
Probab=24.04 E-value=35 Score=25.82 Aligned_cols=56 Identities=13% Similarity=0.129 Sum_probs=34.6
Q ss_pred HHHhhcCceEEEEEeeChhhHHHHHHHHHHcCCcCCCCcccceEEeeccccCcchheeeccccee
Q 025704 139 LEITKFCDLYLMERVLDNESEKKVLLALETAGVFTSGGLVKDKVLFCSTEIGRTSFVRQLEPDWH 203 (249)
Q Consensus 139 leLak~~DvYLm~~V~dD~eE~~Vl~lLe~~GlF~~gGL~rhKVLFCST~~Gr~sfVRQLeP~lH 203 (249)
+++.+. ++.++.-+++.. ++.+.+++++.|.. ++|+|+|-..-....+|++.|.+.
T Consensus 96 l~~~~~-~~~l~iEiK~~~-~~~v~~l~~~~~~~-------~~v~~~Sf~~~~l~~~~~~~P~~~ 151 (240)
T d1zcca1 96 LEHLRG-RAGVYIELKYCD-PAKVAALVRHLGMV-------RDTFYFSFSEEMRQGLQSIAPEFR 151 (240)
T ss_dssp HHHHTT-TCEEEEEEEESC-HHHHHHHHHHHTCS-------TTEEEECSCHHHHHHHHHHCTTSE
T ss_pred hhcccc-cceeEEEEccCc-chhhhHHHHHHHhh-------cccccccccHHHHHHHHHhhhccc
Confidence 344442 345555677654 56788899987643 579998865555555566655544
No 7
>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=23.38 E-value=1e+02 Score=21.63 Aligned_cols=40 Identities=10% Similarity=-0.066 Sum_probs=23.8
Q ss_pred HHHhhcCceEEEEEeeChhhHHHHHHHHHHcCCcCCCCcccceEEeeccc
Q 025704 139 LEITKFCDLYLMERVLDNESEKKVLLALETAGVFTSGGLVKDKVLFCSTE 188 (249)
Q Consensus 139 leLak~~DvYLm~~V~dD~eE~~Vl~lLe~~GlF~~gGL~rhKVLFCST~ 188 (249)
-++++.||+.++| |.+++-.+.+..+... + ++-++-|||.
T Consensus 51 ~e~~~~~diIi~~-v~~~~~~~~~~~~~~~--------~-~~~~id~st~ 90 (152)
T d1i36a2 51 EEDVYSCPVVISA-VTPGVALGAARRAGRH--------V-RGIYVDINNI 90 (152)
T ss_dssp HHHHHTSSEEEEC-SCGGGHHHHHHHHHTT--------C-CSEEEECSCC
T ss_pred HHHHhhcCeEEEE-ecCchHHHHHHhhccc--------C-CceeeccCcC
Confidence 3567889998877 5666555555443322 1 2456667765
No 8
>d2obba1 c.108.1.25 (A:1-122) Hypothetical protein BT0820 {Bacteroides thetaiotaomicron [TaxId: 818]}
Probab=23.32 E-value=1e+02 Score=22.06 Aligned_cols=70 Identities=14% Similarity=0.039 Sum_probs=48.3
Q ss_pred eEEEeecceeeccCChhhhhccceeehhHHHHHHHHhhcCceEEEEEeeChhhHHHHHHHHHHcCCcCCCCcccceEEee
Q 025704 106 KVTCRLLGVILEESCPEELQKQVTVKSSVLEALLEITKFCDLYLMERVLDNESEKKVLLALETAGVFTSGGLVKDKVLFC 185 (249)
Q Consensus 106 kvTis~~gvvl~e~sp~el~~~a~v~esa~e~LleLak~~DvYLm~~V~dD~eE~~Vl~lLe~~GlF~~gGL~rhKVLFC 185 (249)
+++|=+.|+|.+.+.++. +.-.+.+++.|.+|-+.-.-.++..-..+...+...+-|++- |++-+.+.+.
T Consensus 2 ti~vDiDGTl~~~~~~~~----~kPi~~~Ie~l~~L~~~G~~IIi~TaR~~~~~~~t~~wL~~~------~i~yd~i~~~ 71 (122)
T d2obba1 2 TIAVDFDGTIVEHRYPRI----GEEIPFAVETLKLLQQEKHRLILWSVREGELLDEAIEWCRAR------GLEFYAANKD 71 (122)
T ss_dssp EEEECCBTTTBCSCTTSC----CCBCTTHHHHHHHHHHTTCEEEECCSCCHHHHHHHHHHHHTT------TCCCSEESSS
T ss_pred EEEEEcCCCcCCCCCCcc----ccccHHHHHHHHHHHHCCCeEEEEecCCCcchHHHHHHHHHc------CCCceehhcc
Confidence 578889999987665543 345789999999997774444445566777777777888773 4444544433
No 9
>d1vd6a1 c.1.18.3 (A:8-224) Putative glycerophosphodiester phosphodiesterase TTHB141 {Thermus thermophilus [TaxId: 274]}
Probab=22.46 E-value=42 Score=24.26 Aligned_cols=60 Identities=12% Similarity=0.025 Sum_probs=35.3
Q ss_pred HHHHHh-hcCceEEEEEeeCh--hhHHHHHHHHHHcCCcCCCCcccceEEeeccccCcchheeeccccee
Q 025704 137 ALLEIT-KFCDLYLMERVLDN--ESEKKVLLALETAGVFTSGGLVKDKVLFCSTEIGRTSFVRQLEPDWH 203 (249)
Q Consensus 137 ~LleLa-k~~DvYLm~~V~dD--~eE~~Vl~lLe~~GlF~~gGL~rhKVLFCST~~Gr~sfVRQLeP~lH 203 (249)
-++++. ..-++++..-++++ ..+..+..+++..+ ..++++|||-.......+|++.|.+.
T Consensus 77 e~l~~~~~~~~~~~~ie~K~~~~~~~~~~~~l~~~~~-------~~~~v~~~Sf~~~~l~~~~~~~p~~~ 139 (217)
T d1vd6a1 77 EVLALKEAFPQAVFNVELKSFPGLGEEAARRLAALLR-------GREGVWVSSFDPLALLALRKAAPGLP 139 (217)
T ss_dssp HHHGGGGTCTTCEEEEEECCCTTSHHHHHHHHHHHTT-------TCSSEEEEESCHHHHHHHHHHCTTSC
T ss_pred HHHHHHHhCCCceeeeeeccCcchhHHHHHHHHHHhh-------ccceEEEeeccHHHHHHHHHHhccCc
Confidence 344444 34577876666653 33455555556532 24678898876665566666666543
No 10
>d2nrka1 d.218.1.14 (A:4-170) Hypothetical protein GrpB {Enterococcus faecalis [TaxId: 1351]}
Probab=20.52 E-value=63 Score=24.39 Aligned_cols=47 Identities=17% Similarity=0.124 Sum_probs=33.9
Q ss_pred eEEEEEeeChhhHHHHHHHHHHcCCcCCCCcc-cceEEeeccccCcch
Q 025704 147 LYLMERVLDNESEKKVLLALETAGVFTSGGLV-KDKVLFCSTEIGRTS 193 (249)
Q Consensus 147 vYLm~~V~dD~eE~~Vl~lLe~~GlF~~gGL~-rhKVLFCST~~Gr~s 193 (249)
|=++..|.|.++.+.+...|+..|..-.+... ++|..|.....++.+
T Consensus 48 IDI~v~V~~~~~~~~~~~~L~~lGy~~~~~~~~~~r~~~~~~~~~~~~ 95 (167)
T d2nrka1 48 IDFLVIVEEIEKVDLLQWEFERIGYEYMGEFGLSGRRYLRKGPIKRTH 95 (167)
T ss_dssp EEEEEEESCSGGGGGGHHHHHHTTCEECTTTTSTTEEEEEECSSSCCE
T ss_pred eEEEEeecChhhHHHHHHHHHhcCCEEcCcCCCCccEEEEcCCCccee
Confidence 34577888888888889999999988765222 566777776666554
Done!