Query 025707
Match_columns 249
No_of_seqs 125 out of 1202
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 08:40:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025707.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025707hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0667 Tas Predicted oxidored 100.0 4.2E-54 9.1E-59 374.3 24.7 217 9-226 1-220 (316)
2 KOG1575 Voltage-gated shaker-l 100.0 4.9E-52 1.1E-56 356.2 23.1 233 7-242 10-248 (336)
3 PRK10625 tas putative aldo-ket 100.0 6.2E-49 1.3E-53 347.3 22.2 213 9-225 1-247 (346)
4 PRK09912 L-glyceraldehyde 3-ph 100.0 1.4E-48 3E-53 344.9 23.7 216 5-224 9-235 (346)
5 COG0656 ARA1 Aldo/keto reducta 100.0 7.4E-50 1.6E-54 336.7 13.6 216 9-247 3-225 (280)
6 cd06660 Aldo_ket_red Aldo-keto 100.0 6.6E-49 1.4E-53 338.3 19.8 231 11-248 1-247 (285)
7 TIGR01293 Kv_beta voltage-depe 100.0 3.4E-48 7.3E-53 338.9 24.1 210 11-225 1-219 (317)
8 PLN02587 L-galactose dehydroge 100.0 4.9E-48 1.1E-52 337.5 21.2 230 11-247 1-255 (314)
9 PRK10376 putative oxidoreducta 100.0 3.9E-46 8.5E-51 322.0 17.4 228 17-247 13-247 (290)
10 PF00248 Aldo_ket_red: Aldo/ke 100.0 5.8E-46 1.3E-50 319.7 17.2 196 23-225 1-201 (283)
11 KOG1577 Aldo/keto reductase fa 100.0 3.4E-46 7.3E-51 314.7 12.5 212 11-246 6-245 (300)
12 PRK11172 dkgB 2,5-diketo-D-glu 100.0 5E-45 1.1E-49 311.6 15.3 206 19-247 1-213 (267)
13 PRK14863 bifunctional regulato 100.0 1.4E-44 3E-49 312.2 16.2 191 18-222 2-202 (292)
14 COG4989 Predicted oxidoreducta 100.0 3.2E-44 7E-49 291.6 9.5 237 9-248 1-253 (298)
15 KOG1576 Predicted oxidoreducta 100.0 4.9E-42 1.1E-46 280.9 16.6 224 4-230 17-248 (342)
16 COG1453 Predicted oxidoreducta 100.0 2.1E-42 4.6E-47 295.1 14.4 230 9-249 1-243 (391)
17 PRK11565 dkgA 2,5-diketo-D-glu 100.0 4.1E-40 8.9E-45 282.3 20.6 210 12-247 7-223 (275)
18 KOG3023 Glutamate-cysteine lig 98.9 7.3E-09 1.6E-13 84.6 7.9 107 141-249 155-263 (285)
19 cd03319 L-Ala-DL-Glu_epimerase 95.6 0.7 1.5E-05 40.3 14.7 157 40-218 134-292 (316)
20 cd03316 MR_like Mandelate race 92.9 4.8 0.0001 35.6 14.2 154 40-213 139-299 (357)
21 cd03315 MLE_like Muconate lact 91.4 8.1 0.00018 32.7 15.9 158 40-218 85-244 (265)
22 COG0635 HemN Coproporphyrinoge 91.2 1.9 4.2E-05 39.3 9.7 108 22-167 149-276 (416)
23 KOG0259 Tyrosine aminotransfer 90.4 11 0.00024 33.8 13.1 169 20-222 62-249 (447)
24 PF07021 MetW: Methionine bios 90.2 7.6 0.00016 31.5 11.1 150 46-218 5-172 (193)
25 cd03174 DRE_TIM_metallolyase D 90.1 3.5 7.6E-05 34.7 9.9 105 106-212 16-135 (265)
26 COG0135 TrpF Phosphoribosylant 89.9 2.9 6.2E-05 34.4 8.7 88 119-214 18-107 (208)
27 PRK01222 N-(5'-phosphoribosyl) 89.4 2.9 6.2E-05 34.4 8.4 66 119-186 19-85 (210)
28 cd06543 GH18_PF-ChiA-like PF-C 89.3 14 0.0003 32.1 14.8 184 23-218 71-266 (294)
29 PRK13958 N-(5'-phosphoribosyl) 88.9 1.7 3.7E-05 35.7 6.7 67 118-186 16-83 (207)
30 PF00682 HMGL-like: HMGL-like 88.4 7.5 0.00016 32.2 10.5 149 39-203 11-177 (237)
31 cd03323 D-glucarate_dehydratas 88.4 19 0.00041 32.6 14.9 151 40-214 168-321 (395)
32 PRK13796 GTPase YqeH; Provisio 88.2 18 0.00038 32.4 13.3 124 39-174 54-180 (365)
33 PRK08609 hypothetical protein; 85.6 14 0.0003 35.3 11.7 149 44-209 351-522 (570)
34 COG2089 SpsE Sialic acid synth 85.3 21 0.00045 31.4 11.4 118 39-175 87-224 (347)
35 cd03318 MLE Muconate Lactonizi 85.1 27 0.00059 31.0 14.2 153 41-214 143-299 (365)
36 TIGR02370 pyl_corrinoid methyl 84.6 20 0.00043 29.1 11.6 145 40-206 10-164 (197)
37 PF03102 NeuB: NeuB family; I 83.7 8.8 0.00019 32.3 8.5 113 39-170 53-185 (241)
38 cd03322 rpsA The starvation se 83.7 32 0.00069 30.7 15.1 146 40-213 126-273 (361)
39 TIGR01928 menC_lowGC/arch o-su 83.5 30 0.00065 30.3 14.9 153 40-217 132-286 (324)
40 cd04731 HisF The cyclase subun 83.3 25 0.00054 29.3 11.2 145 40-204 82-243 (243)
41 PRK10550 tRNA-dihydrouridine s 83.1 31 0.00068 30.2 14.0 132 40-184 73-223 (312)
42 cd00308 enolase_like Enolase-s 82.1 15 0.00033 30.3 9.3 88 127-218 120-209 (229)
43 cd02070 corrinoid_protein_B12- 82.1 25 0.00055 28.4 12.3 145 40-206 9-162 (201)
44 PRK06294 coproporphyrinogen II 82.0 13 0.00027 33.4 9.4 60 106-167 167-243 (370)
45 PRK07379 coproporphyrinogen II 81.9 12 0.00027 33.8 9.4 60 106-167 179-255 (400)
46 PRK08392 hypothetical protein; 81.7 27 0.00059 28.5 13.0 151 42-210 14-179 (215)
47 PRK00164 moaA molybdenum cofac 81.4 36 0.00078 29.7 15.6 153 38-210 48-228 (331)
48 PRK08446 coproporphyrinogen II 81.4 25 0.00054 31.2 11.0 60 106-167 162-231 (350)
49 COG1140 NarY Nitrate reductase 81.1 0.83 1.8E-05 40.6 1.4 54 154-207 263-317 (513)
50 PRK07945 hypothetical protein; 80.3 41 0.00089 29.7 14.3 154 41-209 110-288 (335)
51 PRK13803 bifunctional phosphor 80.2 13 0.00028 35.8 9.2 66 120-186 20-87 (610)
52 PRK05692 hydroxymethylglutaryl 80.1 14 0.0003 31.9 8.7 102 106-210 23-138 (287)
53 PRK05660 HemN family oxidoredu 79.9 17 0.00036 32.7 9.4 27 106-133 171-197 (378)
54 TIGR01502 B_methylAsp_ase meth 78.8 45 0.00096 30.5 11.8 86 128-214 265-357 (408)
55 cd03325 D-galactonate_dehydrat 78.5 48 0.001 29.4 15.7 153 40-212 123-285 (352)
56 COG2355 Zn-dependent dipeptida 78.1 28 0.0006 30.5 9.8 107 42-164 149-260 (313)
57 cd03321 mandelate_racemase Man 78.1 49 0.0011 29.3 13.6 153 40-212 141-295 (355)
58 PRK09058 coproporphyrinogen II 78.1 14 0.0003 34.1 8.5 28 106-134 227-254 (449)
59 TIGR01278 DPOR_BchB light-inde 77.7 43 0.00092 31.5 11.7 132 70-215 69-243 (511)
60 COG1748 LYS9 Saccharopine dehy 77.3 20 0.00043 32.4 9.0 83 40-138 77-159 (389)
61 TIGR02534 mucon_cyclo muconate 76.2 57 0.0012 29.1 15.1 151 45-215 146-299 (368)
62 PRK13347 coproporphyrinogen II 74.7 21 0.00045 33.0 8.7 60 106-167 216-291 (453)
63 cd07943 DRE_TIM_HOA 4-hydroxy- 74.7 51 0.0011 27.8 17.0 25 38-62 18-42 (263)
64 COG1801 Uncharacterized conser 74.4 54 0.0012 28.0 11.2 108 23-139 4-116 (263)
65 cd00739 DHPS DHPS subgroup of 74.3 30 0.00065 29.4 8.9 102 106-213 21-128 (257)
66 PLN02363 phosphoribosylanthran 74.1 16 0.00035 31.1 7.2 65 121-186 65-130 (256)
67 PF04476 DUF556: Protein of un 73.8 53 0.0011 27.5 12.0 153 40-208 9-183 (235)
68 PRK13352 thiamine biosynthesis 73.2 74 0.0016 29.0 12.5 116 40-174 75-195 (431)
69 PRK09427 bifunctional indole-3 72.2 13 0.00028 34.4 6.7 65 119-187 273-338 (454)
70 PRK08208 coproporphyrinogen II 71.9 33 0.00072 31.4 9.3 61 105-167 204-275 (430)
71 TIGR00190 thiC thiamine biosyn 71.9 79 0.0017 28.8 12.7 116 40-174 75-192 (423)
72 COG1168 MalY Bifunctional PLP- 71.7 55 0.0012 29.5 10.1 46 166-211 146-197 (388)
73 PF13378 MR_MLE_C: Enolase C-t 71.7 8.7 0.00019 27.7 4.5 54 163-217 3-57 (111)
74 PRK05628 coproporphyrinogen II 71.5 39 0.00085 30.2 9.6 27 106-133 172-198 (375)
75 TIGR00735 hisF imidazoleglycer 71.3 61 0.0013 27.2 10.3 91 115-208 160-253 (254)
76 KOG0023 Alcohol dehydrogenase, 70.5 23 0.0005 31.2 7.3 148 7-208 172-324 (360)
77 cd07944 DRE_TIM_HOA_like 4-hyd 69.9 69 0.0015 27.3 10.7 104 105-211 16-128 (266)
78 PRK14463 ribosomal RNA large s 69.1 84 0.0018 28.0 10.9 94 130-223 211-338 (349)
79 cd00423 Pterin_binding Pterin 68.1 59 0.0013 27.5 9.5 103 106-214 21-129 (258)
80 PRK12581 oxaloacetate decarbox 68.1 1E+02 0.0023 28.7 14.8 153 39-207 102-264 (468)
81 cd00740 MeTr MeTr subgroup of 68.0 74 0.0016 26.9 11.1 109 105-217 22-131 (252)
82 PRK14017 galactonate dehydrata 67.7 92 0.002 27.9 15.3 154 40-213 124-287 (382)
83 TIGR00126 deoC deoxyribose-pho 67.7 48 0.001 27.3 8.5 72 40-126 130-205 (211)
84 cd03327 MR_like_2 Mandelate ra 67.2 89 0.0019 27.5 15.2 153 40-212 120-280 (341)
85 PF00697 PRAI: N-(5'phosphorib 66.9 22 0.00048 28.7 6.4 65 118-186 14-79 (197)
86 TIGR00538 hemN oxygen-independ 66.9 37 0.0008 31.3 8.5 60 106-167 215-290 (455)
87 PLN02746 hydroxymethylglutaryl 66.7 18 0.0004 32.2 6.2 94 111-209 69-179 (347)
88 PF07302 AroM: AroM protein; 66.6 75 0.0016 26.4 14.0 160 39-211 10-184 (221)
89 PRK06582 coproporphyrinogen II 66.5 47 0.001 30.0 9.0 60 106-167 174-250 (390)
90 PRK05799 coproporphyrinogen II 66.4 58 0.0013 29.0 9.5 27 106-133 163-189 (374)
91 cd00405 PRAI Phosphoribosylant 66.3 30 0.00064 28.0 7.1 47 117-170 67-113 (203)
92 cd04740 DHOD_1B_like Dihydroor 66.1 85 0.0018 26.9 14.5 152 40-207 100-287 (296)
93 PRK14461 ribosomal RNA large s 65.8 58 0.0013 29.3 9.2 93 129-222 231-364 (371)
94 cd07943 DRE_TIM_HOA 4-hydroxy- 65.8 82 0.0018 26.6 11.4 104 106-211 19-131 (263)
95 cd07937 DRE_TIM_PC_TC_5S Pyruv 65.3 87 0.0019 26.7 17.8 111 37-159 16-135 (275)
96 PF00682 HMGL-like: HMGL-like 65.0 54 0.0012 27.0 8.6 97 106-208 11-124 (237)
97 PRK15072 bifunctional D-altron 64.8 70 0.0015 29.0 9.8 83 127-213 232-316 (404)
98 cd03314 MAL Methylaspartate am 64.6 1.1E+02 0.0023 27.6 11.9 85 129-213 229-320 (369)
99 COG2874 FlaH Predicted ATPases 64.1 85 0.0018 26.2 9.5 138 12-164 19-167 (235)
100 cd03329 MR_like_4 Mandelate ra 64.0 1.1E+02 0.0023 27.3 15.2 152 40-212 143-299 (368)
101 PRK09061 D-glutamate deacylase 63.9 83 0.0018 29.5 10.4 113 42-165 169-285 (509)
102 smart00642 Aamy Alpha-amylase 63.7 11 0.00024 29.7 3.9 21 195-215 73-93 (166)
103 COG0042 tRNA-dihydrouridine sy 63.5 1.1E+02 0.0023 27.0 11.3 132 40-184 77-227 (323)
104 TIGR02026 BchE magnesium-proto 63.0 83 0.0018 29.4 10.2 89 115-206 289-392 (497)
105 PRK08599 coproporphyrinogen II 62.7 65 0.0014 28.8 9.2 60 106-167 164-240 (377)
106 TIGR00676 fadh2 5,10-methylene 62.3 99 0.0021 26.4 13.1 150 42-208 15-186 (272)
107 TIGR03247 glucar-dehydr glucar 61.9 1.3E+02 0.0029 27.7 14.4 156 40-213 180-337 (441)
108 cd03317 NAAAR N-acylamino acid 61.9 1.1E+02 0.0025 26.9 15.4 149 42-216 139-290 (354)
109 CHL00076 chlB photochlorophyll 61.6 1.4E+02 0.0031 28.0 12.7 133 70-216 69-249 (513)
110 PRK02910 light-independent pro 61.6 1.1E+02 0.0025 28.7 10.8 131 70-215 69-243 (519)
111 TIGR00737 nifR3_yhdG putative 61.4 1.1E+02 0.0024 26.6 13.1 134 40-185 73-222 (319)
112 PRK02083 imidazole glycerol ph 60.8 99 0.0021 25.9 11.5 86 118-208 161-251 (253)
113 COG4992 ArgD Ornithine/acetylo 60.8 58 0.0012 29.6 8.2 38 55-93 41-81 (404)
114 PF01487 DHquinase_I: Type I 3 60.8 92 0.002 25.5 10.4 121 39-174 72-192 (224)
115 COG1751 Uncharacterized conser 60.3 48 0.001 25.9 6.6 76 35-124 7-84 (186)
116 TIGR01430 aden_deam adenosine 59.9 1.2E+02 0.0025 26.4 14.2 99 107-209 138-237 (324)
117 cd01301 rDP_like renal dipepti 59.8 58 0.0013 28.5 8.0 107 42-164 154-263 (309)
118 cd03174 DRE_TIM_metallolyase D 59.6 1E+02 0.0022 25.6 15.0 52 39-90 16-73 (265)
119 PRK09249 coproporphyrinogen II 59.5 61 0.0013 29.9 8.5 60 106-167 215-290 (453)
120 TIGR03597 GTPase_YqeH ribosome 59.1 1.3E+02 0.0029 26.8 12.1 123 39-173 48-173 (360)
121 PRK05414 urocanate hydratase; 58.4 34 0.00074 32.0 6.5 125 48-186 118-267 (556)
122 PF14871 GHL6: Hypothetical gl 58.4 25 0.00054 26.6 4.9 25 191-215 43-67 (132)
123 TIGR02090 LEU1_arch isopropylm 58.2 1.4E+02 0.003 26.7 11.0 26 38-63 18-43 (363)
124 PRK08195 4-hyroxy-2-oxovalerat 58.1 1.3E+02 0.0029 26.5 18.1 49 38-86 21-80 (337)
125 PRK08776 cystathionine gamma-s 57.4 60 0.0013 29.5 8.0 76 143-218 111-188 (405)
126 TIGR03822 AblA_like_2 lysine-2 57.4 1.3E+02 0.0029 26.3 11.8 110 107-219 120-241 (321)
127 TIGR01228 hutU urocanate hydra 57.3 35 0.00077 31.8 6.3 149 17-186 85-258 (545)
128 cd07939 DRE_TIM_NifV Streptomy 57.2 1.2E+02 0.0025 25.6 11.5 96 106-209 17-127 (259)
129 PRK00730 rnpA ribonuclease P; 57.1 77 0.0017 24.3 7.3 63 82-154 46-110 (138)
130 PF13407 Peripla_BP_4: Peripla 56.7 55 0.0012 26.8 7.2 52 109-166 14-65 (257)
131 PRK13361 molybdenum cofactor b 56.7 1.4E+02 0.003 26.2 15.0 130 38-188 44-193 (329)
132 PRK07259 dihydroorotate dehydr 56.5 1.3E+02 0.0028 25.9 11.8 153 40-206 102-289 (301)
133 cd01974 Nitrogenase_MoFe_beta 56.2 1.3E+02 0.0028 27.6 10.0 105 62-183 64-192 (435)
134 COG0626 MetC Cystathionine bet 55.9 72 0.0016 29.0 8.1 82 141-222 112-196 (396)
135 TIGR03471 HpnJ hopanoid biosyn 55.9 1.7E+02 0.0037 27.0 11.8 90 115-207 289-393 (472)
136 COG2256 MGS1 ATPase related to 55.3 88 0.0019 28.6 8.4 103 46-167 37-143 (436)
137 PRK04452 acetyl-CoA decarbonyl 55.3 1.5E+02 0.0032 26.2 10.3 95 117-214 83-184 (319)
138 TIGR03822 AblA_like_2 lysine-2 55.2 1.5E+02 0.0032 26.0 13.7 121 39-175 119-252 (321)
139 cd02801 DUS_like_FMN Dihydrour 55.2 1.1E+02 0.0025 24.8 9.8 133 40-185 65-213 (231)
140 PRK12928 lipoyl synthase; Prov 54.9 1.4E+02 0.0031 25.8 11.1 77 139-216 185-282 (290)
141 PRK05283 deoxyribose-phosphate 54.7 68 0.0015 27.3 7.3 77 41-128 146-227 (257)
142 PRK05458 guanosine 5'-monophos 54.7 1.5E+02 0.0033 26.1 9.8 125 77-210 16-145 (326)
143 smart00052 EAL Putative diguan 54.2 1E+02 0.0023 24.8 8.5 100 110-213 100-211 (241)
144 PF01053 Cys_Met_Meta_PP: Cys/ 53.9 48 0.001 30.0 6.7 82 141-222 104-188 (386)
145 PF05690 ThiG: Thiazole biosyn 53.9 1.3E+02 0.0028 25.4 8.5 168 22-212 9-182 (247)
146 PLN00191 enolase 53.9 1.9E+02 0.0041 26.9 10.6 97 106-211 295-394 (457)
147 cd02930 DCR_FMN 2,4-dienoyl-Co 53.7 1.6E+02 0.0035 26.1 13.5 98 82-184 201-305 (353)
148 cd01297 D-aminoacylase D-amino 53.4 1.7E+02 0.0038 26.4 12.0 124 41-176 166-298 (415)
149 TIGR03217 4OH_2_O_val_ald 4-hy 53.2 1.6E+02 0.0035 26.0 18.3 50 38-87 20-80 (333)
150 PRK14462 ribosomal RNA large s 53.1 1.7E+02 0.0037 26.2 10.1 85 131-215 225-337 (356)
151 PF02679 ComA: (2R)-phospho-3- 53.1 11 0.00024 31.8 2.3 98 112-210 24-131 (244)
152 cd02069 methionine_synthase_B1 52.6 1.3E+02 0.0028 24.7 11.7 144 39-206 12-168 (213)
153 PF09989 DUF2229: CoA enzyme a 52.5 45 0.00098 27.6 5.9 34 179-212 186-219 (221)
154 PRK08195 4-hyroxy-2-oxovalerat 52.2 1.7E+02 0.0037 25.9 10.9 102 105-211 21-134 (337)
155 cd03320 OSBS o-Succinylbenzoat 52.1 1.4E+02 0.0031 25.1 12.9 86 127-217 153-239 (263)
156 TIGR00539 hemN_rel putative ox 51.9 1.5E+02 0.0033 26.2 9.6 26 106-132 164-189 (360)
157 PRK14465 ribosomal RNA large s 51.7 1.5E+02 0.0033 26.3 9.4 88 129-216 215-329 (342)
158 PRK07535 methyltetrahydrofolat 51.5 1.5E+02 0.0033 25.2 9.9 103 106-213 22-124 (261)
159 TIGR02660 nifV_homocitr homoci 50.6 1.8E+02 0.004 25.9 10.1 96 106-209 20-130 (365)
160 PF00809 Pterin_bind: Pterin b 50.1 50 0.0011 27.0 5.8 90 119-214 28-125 (210)
161 COG2875 CobM Precorrin-4 methy 50.0 61 0.0013 27.2 6.1 129 106-239 59-199 (254)
162 TIGR02026 BchE magnesium-proto 49.9 2.2E+02 0.0048 26.6 10.8 102 105-210 221-341 (497)
163 PRK00507 deoxyribose-phosphate 49.7 82 0.0018 26.1 7.0 75 39-125 133-208 (221)
164 PRK05406 LamB/YcsF family prot 49.6 74 0.0016 26.9 6.7 81 25-122 13-95 (246)
165 COG2069 CdhD CO dehydrogenase/ 49.4 1.8E+02 0.0039 25.5 10.4 95 116-215 157-261 (403)
166 PF01207 Dus: Dihydrouridine s 49.0 78 0.0017 27.6 7.1 133 40-184 64-212 (309)
167 PRK13010 purU formyltetrahydro 48.4 1.8E+02 0.0039 25.2 13.7 149 41-215 20-179 (289)
168 COG4464 CapC Capsular polysacc 48.2 95 0.0021 25.9 6.9 123 39-163 17-165 (254)
169 TIGR03849 arch_ComA phosphosul 48.2 1.4E+02 0.003 25.1 8.1 96 113-210 12-118 (237)
170 TIGR02080 O_succ_thio_ly O-suc 47.9 2.1E+02 0.0045 25.7 11.2 87 128-218 91-179 (382)
171 COG0820 Predicted Fe-S-cluster 47.9 1.2E+02 0.0026 27.1 8.0 86 129-215 215-329 (349)
172 PLN02540 methylenetetrahydrofo 47.8 2.6E+02 0.0056 26.8 14.4 153 41-209 14-201 (565)
173 COG1121 ZnuC ABC-type Mn/Zn tr 47.8 1.1E+02 0.0025 25.9 7.6 62 112-175 117-207 (254)
174 PRK06740 histidinol-phosphatas 47.3 2E+02 0.0043 25.3 12.1 25 40-64 59-83 (331)
175 COG0218 Predicted GTPase [Gene 47.2 1.6E+02 0.0034 24.1 8.6 101 41-154 90-198 (200)
176 PRK08247 cystathionine gamma-s 47.1 1.1E+02 0.0024 27.1 8.0 64 157-220 116-181 (366)
177 PF07476 MAAL_C: Methylasparta 47.0 66 0.0014 26.9 5.8 100 107-209 87-193 (248)
178 PRK09358 adenosine deaminase; 46.1 2E+02 0.0044 25.1 13.8 99 108-209 148-247 (340)
179 PF01118 Semialdhyde_dh: Semia 46.1 33 0.00071 25.2 3.8 28 39-66 74-101 (121)
180 PLN02428 lipoic acid synthase 45.9 2.2E+02 0.0048 25.4 11.6 157 39-216 130-325 (349)
181 COG2159 Predicted metal-depend 45.9 1.5E+02 0.0032 25.6 8.3 94 119-214 55-166 (293)
182 PRK10415 tRNA-dihydrouridine s 45.8 2.1E+02 0.0045 25.1 12.2 134 40-185 75-224 (321)
183 cd04742 NPD_FabD 2-Nitropropan 45.6 1.1E+02 0.0024 28.1 7.7 89 118-213 6-103 (418)
184 TIGR01496 DHPS dihydropteroate 45.4 1.9E+02 0.0041 24.5 10.8 99 106-212 20-125 (257)
185 PRK05968 hypothetical protein; 44.7 1.2E+02 0.0027 27.2 7.9 55 164-218 135-190 (389)
186 TIGR00048 radical SAM enzyme, 44.6 2.3E+02 0.005 25.3 9.6 94 129-222 218-345 (355)
187 PTZ00124 adenosine deaminase; 44.5 2.3E+02 0.0051 25.3 13.6 154 44-210 108-275 (362)
188 COG3172 NadR Predicted ATPase/ 44.5 1.2E+02 0.0025 24.3 6.6 98 53-155 78-185 (187)
189 TIGR01182 eda Entner-Doudoroff 44.4 1.6E+02 0.0034 24.1 7.8 88 107-210 18-106 (204)
190 TIGR03217 4OH_2_O_val_ald 4-hy 44.3 2.3E+02 0.0049 25.1 11.1 101 105-210 20-132 (333)
191 PRK14459 ribosomal RNA large s 44.2 2.4E+02 0.0053 25.4 9.8 88 128-215 240-358 (373)
192 PRK00077 eno enolase; Provisio 44.1 2.6E+02 0.0055 25.6 11.5 96 106-210 261-361 (425)
193 TIGR01329 cysta_beta_ly_E cyst 44.0 1.3E+02 0.0028 26.9 8.0 75 145-219 99-175 (378)
194 PF01175 Urocanase: Urocanase; 44.0 60 0.0013 30.4 5.6 125 48-186 108-257 (546)
195 PRK12558 glutamyl-tRNA synthet 43.8 55 0.0012 30.2 5.5 58 106-171 48-105 (445)
196 COG3623 SgaU Putative L-xylulo 43.0 50 0.0011 27.8 4.6 76 16-93 65-156 (287)
197 TIGR03820 lys_2_3_AblA lysine- 42.9 2.7E+02 0.0058 25.6 10.5 108 107-218 139-258 (417)
198 PRK08248 O-acetylhomoserine am 42.9 1.6E+02 0.0034 27.0 8.4 61 157-217 129-191 (431)
199 PRK13753 dihydropteroate synth 42.9 2.2E+02 0.0048 24.6 9.8 102 106-215 22-129 (279)
200 cd07948 DRE_TIM_HCS Saccharomy 42.8 2.1E+02 0.0045 24.3 16.3 28 39-66 19-47 (262)
201 COG4555 NatA ABC-type Na+ tran 42.7 1.5E+02 0.0032 24.7 7.1 69 106-176 105-202 (245)
202 PRK12569 hypothetical protein; 42.6 1.2E+02 0.0026 25.7 6.8 83 25-122 14-98 (245)
203 TIGR00689 rpiB_lacA_lacB sugar 42.5 1.6E+02 0.0034 22.7 10.9 97 106-212 7-105 (144)
204 cd07938 DRE_TIM_HMGL 3-hydroxy 42.5 1.4E+02 0.0031 25.5 7.6 98 112-211 22-133 (274)
205 COG2185 Sbm Methylmalonyl-CoA 42.3 1.6E+02 0.0034 22.7 12.0 109 41-174 25-134 (143)
206 PRK14466 ribosomal RNA large s 42.3 1E+02 0.0022 27.5 6.8 94 129-222 210-337 (345)
207 PRK05588 histidinol-phosphatas 42.0 1.4E+02 0.0031 24.9 7.5 80 41-136 15-103 (255)
208 TIGR00789 flhB_rel flhB C-term 41.6 8.6 0.00019 26.6 -0.0 40 195-235 30-69 (82)
209 cd03324 rTSbeta_L-fuconate_deh 41.6 2.8E+02 0.006 25.3 15.4 152 40-212 196-352 (415)
210 PRK05571 ribose-5-phosphate is 41.0 1.7E+02 0.0037 22.7 11.5 99 106-213 9-109 (148)
211 PRK05904 coproporphyrinogen II 40.8 2.6E+02 0.0056 24.8 9.3 27 106-133 167-193 (353)
212 COG4943 Predicted signal trans 40.8 1.9E+02 0.004 27.2 8.2 137 70-224 340-505 (524)
213 cd07948 DRE_TIM_HCS Saccharomy 40.8 2.3E+02 0.0049 24.1 9.8 98 106-211 19-131 (262)
214 cd03326 MR_like_1 Mandelate ra 40.7 2.7E+02 0.006 25.0 14.1 148 40-207 160-313 (385)
215 PRK05339 PEP synthetase regula 40.7 2E+02 0.0043 24.7 8.1 75 40-131 14-91 (269)
216 COG4626 Phage terminase-like p 40.3 1.3E+02 0.0028 28.5 7.4 77 139-215 410-486 (546)
217 PRK07810 O-succinylhomoserine 39.3 1.7E+02 0.0037 26.4 8.0 57 163-219 141-199 (403)
218 PRK05718 keto-hydroxyglutarate 39.1 2.2E+02 0.0047 23.4 8.1 53 39-93 24-76 (212)
219 TIGR02090 LEU1_arch isopropylm 38.9 2.1E+02 0.0045 25.6 8.3 96 106-209 19-129 (363)
220 cd00405 PRAI Phosphoribosylant 38.8 1.2E+02 0.0026 24.4 6.3 66 120-187 16-82 (203)
221 PRK06015 keto-hydroxyglutarate 38.8 1E+02 0.0022 25.2 5.8 87 108-210 15-102 (201)
222 PRK08133 O-succinylhomoserine 38.8 1.7E+02 0.0038 26.2 8.0 61 158-218 127-189 (390)
223 cd03313 enolase Enolase: Enola 38.7 3.1E+02 0.0066 25.0 10.9 96 106-210 261-361 (408)
224 PRK06176 cystathionine gamma-s 38.7 2.1E+02 0.0045 25.6 8.4 63 157-219 114-178 (380)
225 PRK09536 btuD corrinoid ABC tr 38.7 1.2E+02 0.0026 27.6 6.9 74 144-217 279-352 (402)
226 PRK14455 ribosomal RNA large s 38.5 2.4E+02 0.0052 25.2 8.6 87 129-215 222-336 (356)
227 PF01244 Peptidase_M19: Membra 38.2 25 0.00055 30.8 2.4 108 41-164 159-271 (320)
228 TIGR02660 nifV_homocitr homoci 38.0 2.9E+02 0.0064 24.6 13.8 39 39-79 20-60 (365)
229 COG0145 HyuA N-methylhydantoin 37.9 3.8E+02 0.0083 26.3 10.4 101 38-140 135-246 (674)
230 cd07944 DRE_TIM_HOA_like 4-hyd 37.9 2.5E+02 0.0055 23.8 17.1 25 39-63 17-41 (266)
231 PRK00915 2-isopropylmalate syn 37.9 3.5E+02 0.0076 25.5 11.1 25 39-63 23-47 (513)
232 PRK11359 cyclic-di-GMP phospho 37.8 2.2E+02 0.0049 27.8 9.2 81 140-223 676-781 (799)
233 TIGR00655 PurU formyltetrahydr 37.7 2.7E+02 0.0058 24.0 11.4 146 42-215 12-170 (280)
234 KOG0996 Structural maintenance 37.6 24 0.00051 36.2 2.2 73 141-216 599-676 (1293)
235 PRK08045 cystathionine gamma-s 37.6 2.3E+02 0.0051 25.4 8.6 88 128-219 92-181 (386)
236 COG2873 MET17 O-acetylhomoseri 37.4 3.2E+02 0.007 24.9 11.9 63 41-124 63-127 (426)
237 PF01904 DUF72: Protein of unk 37.4 2.4E+02 0.0051 23.3 11.7 130 56-212 19-149 (230)
238 PF00148 Oxidored_nitro: Nitro 37.4 2.9E+02 0.0063 24.6 9.2 132 70-214 58-226 (398)
239 cd02803 OYE_like_FMN_family Ol 37.3 2.7E+02 0.0059 24.0 13.2 138 38-184 130-310 (327)
240 PRK02412 aroD 3-dehydroquinate 37.2 2.5E+02 0.0055 23.6 17.0 164 40-217 26-209 (253)
241 COG1831 Predicted metal-depend 37.1 2.7E+02 0.0059 23.9 9.7 65 142-206 107-185 (285)
242 cd01948 EAL EAL domain. This d 37.1 2.2E+02 0.0047 22.8 9.4 102 109-213 98-210 (240)
243 PLN02389 biotin synthase 37.0 3.2E+02 0.0069 24.7 14.1 101 39-156 116-227 (379)
244 KOG0173 20S proteasome, regula 36.9 30 0.00066 29.1 2.5 23 34-56 178-200 (271)
245 PF01791 DeoC: DeoC/LacD famil 36.9 1.9E+02 0.0042 23.8 7.5 130 42-187 19-168 (236)
246 cd00614 CGS_like CGS_like: Cys 36.8 2E+02 0.0043 25.5 8.0 55 165-219 113-169 (369)
247 PRK11613 folP dihydropteroate 36.8 2.7E+02 0.0058 24.1 8.3 99 107-212 36-140 (282)
248 PF05368 NmrA: NmrA-like famil 36.7 1.8E+02 0.0038 23.6 7.2 85 126-218 22-107 (233)
249 COG4152 ABC-type uncharacteriz 36.6 2.8E+02 0.006 23.9 8.3 69 106-176 102-199 (300)
250 PRK05939 hypothetical protein; 36.6 2E+02 0.0044 25.9 8.1 55 165-219 119-175 (397)
251 TIGR01927 menC_gamma/gm+ o-suc 36.5 2.8E+02 0.0062 24.0 14.1 86 127-218 183-270 (307)
252 PRK07671 cystathionine beta-ly 36.2 2.3E+02 0.0049 25.3 8.2 56 164-219 121-178 (377)
253 COG1523 PulA Type II secretory 36.2 40 0.00087 33.0 3.5 82 115-214 205-287 (697)
254 PF00072 Response_reg: Respons 36.1 1.4E+02 0.0031 20.4 6.3 64 121-186 38-102 (112)
255 cd01320 ADA Adenosine deaminas 36.1 2.8E+02 0.0062 23.9 14.6 98 108-209 140-238 (325)
256 PRK07094 biotin synthase; Prov 35.8 2.9E+02 0.0063 23.9 12.7 116 39-175 70-202 (323)
257 cd00959 DeoC 2-deoxyribose-5-p 35.7 2.3E+02 0.0051 22.8 8.0 70 40-124 129-202 (203)
258 TIGR02668 moaA_archaeal probab 35.6 2.8E+02 0.0061 23.7 12.7 147 38-205 39-213 (302)
259 PF06506 PrpR_N: Propionate ca 35.5 43 0.00093 26.4 3.1 68 141-213 63-133 (176)
260 TIGR00314 cdhA CO dehydrogenas 35.4 49 0.0011 32.8 4.0 74 141-220 246-337 (784)
261 PF05049 IIGP: Interferon-indu 35.3 1.2E+02 0.0025 27.5 6.1 84 53-138 109-202 (376)
262 TIGR02814 pfaD_fam PfaD family 35.2 2E+02 0.0044 26.6 7.7 89 118-213 11-108 (444)
263 PF07555 NAGidase: beta-N-acet 35.0 95 0.0021 27.1 5.4 102 32-164 5-112 (306)
264 PRK13011 formyltetrahydrofolat 35.0 3E+02 0.0064 23.8 13.5 146 41-214 18-174 (286)
265 PRK07811 cystathionine gamma-s 34.9 3.3E+02 0.0073 24.3 10.2 101 114-219 88-190 (388)
266 TIGR03820 lys_2_3_AblA lysine- 34.9 3.6E+02 0.0079 24.7 10.6 123 39-176 138-271 (417)
267 PRK00912 ribonuclease P protei 34.9 2.6E+02 0.0056 23.1 10.2 141 41-210 15-172 (237)
268 TIGR00973 leuA_bact 2-isopropy 34.8 3.9E+02 0.0084 25.1 13.9 24 39-62 20-43 (494)
269 PRK08621 galactose-6-phosphate 34.8 2.1E+02 0.0046 22.0 10.7 96 106-213 9-106 (142)
270 cd07939 DRE_TIM_NifV Streptomy 34.8 2.8E+02 0.006 23.3 15.8 24 39-62 17-40 (259)
271 PHA02128 hypothetical protein 34.7 1.6E+02 0.0034 21.5 5.5 70 142-211 60-150 (151)
272 cd01973 Nitrogenase_VFe_beta_l 34.5 3.8E+02 0.0082 24.8 12.0 110 62-184 65-194 (454)
273 TIGR01060 eno phosphopyruvate 34.5 3.7E+02 0.0079 24.6 11.4 96 106-210 262-362 (425)
274 cd02932 OYE_YqiM_FMN Old yello 34.4 3.2E+02 0.0069 23.9 13.1 138 38-184 143-319 (336)
275 PRK07328 histidinol-phosphatas 34.3 2.8E+02 0.0062 23.3 14.4 107 43-163 19-161 (269)
276 cd02810 DHOD_DHPD_FMN Dihydroo 33.9 2.9E+02 0.0064 23.4 12.1 131 40-185 109-272 (289)
277 smart00148 PLCXc Phospholipase 33.9 1.8E+02 0.004 21.8 6.3 18 45-62 31-48 (135)
278 PRK07503 methionine gamma-lyas 33.8 2.5E+02 0.0055 25.3 8.2 63 157-219 130-194 (403)
279 COG0710 AroD 3-dehydroquinate 33.7 2.9E+02 0.0062 23.2 15.5 88 40-132 12-101 (231)
280 TIGR01404 FlhB_rel_III type II 33.7 12 0.00026 33.2 -0.4 42 195-236 291-332 (342)
281 PRK15108 biotin synthase; Prov 33.6 3.4E+02 0.0074 24.0 12.3 105 39-159 76-188 (345)
282 PF03851 UvdE: UV-endonuclease 33.5 3.1E+02 0.0068 23.6 12.0 102 41-147 44-165 (275)
283 PRK09282 pyruvate carboxylase 33.5 4.5E+02 0.0097 25.4 12.6 148 39-205 93-253 (592)
284 COG0502 BioB Biotin synthase a 33.4 3.5E+02 0.0075 24.1 9.6 133 39-191 84-233 (335)
285 TIGR00677 fadh2_euk methylenet 33.3 3.1E+02 0.0068 23.5 13.4 152 41-208 15-190 (281)
286 PRK15108 biotin synthase; Prov 33.3 3.4E+02 0.0075 24.0 11.1 107 106-217 76-196 (345)
287 PRK06298 type III secretion sy 33.3 13 0.00028 33.2 -0.2 42 195-236 293-334 (356)
288 PLN02509 cystathionine beta-ly 33.2 2.4E+02 0.0051 26.3 8.0 57 164-220 204-262 (464)
289 KOG0053 Cystathionine beta-lya 33.1 3.9E+02 0.0084 24.5 9.4 55 168-222 153-209 (409)
290 PRK14340 (dimethylallyl)adenos 33.0 3.9E+02 0.0085 24.6 10.6 121 39-175 178-322 (445)
291 PRK02901 O-succinylbenzoate sy 32.9 3.4E+02 0.0074 23.9 11.2 71 145-217 173-244 (327)
292 PF02679 ComA: (2R)-phospho-3- 32.8 1.2E+02 0.0026 25.6 5.5 86 42-135 84-169 (244)
293 cd04734 OYE_like_3_FMN Old yel 32.8 3.5E+02 0.0076 23.9 15.0 138 38-184 130-314 (343)
294 TIGR02666 moaA molybdenum cofa 32.7 3.3E+02 0.0072 23.7 14.9 130 38-188 42-192 (334)
295 TIGR01428 HAD_type_II 2-haloal 32.3 1E+02 0.0022 24.4 4.9 64 111-176 61-128 (198)
296 PRK10551 phage resistance prot 32.3 2.7E+02 0.006 26.1 8.4 109 111-223 366-500 (518)
297 PRK10508 hypothetical protein; 32.1 79 0.0017 27.9 4.5 42 106-152 286-327 (333)
298 PRK14040 oxaloacetate decarbox 31.9 4.8E+02 0.01 25.2 18.9 104 38-157 23-139 (593)
299 cd02933 OYE_like_FMN Old yello 31.9 3.6E+02 0.0078 23.8 14.1 94 87-184 220-313 (338)
300 TIGR00035 asp_race aspartate r 31.8 2.9E+02 0.0063 22.7 9.3 62 107-169 15-88 (229)
301 PRK11858 aksA trans-homoaconit 31.6 3.8E+02 0.0083 24.0 10.9 99 105-211 22-135 (378)
302 KOG3086 Predicted dioxygenase 31.5 77 0.0017 26.8 4.0 58 69-127 162-222 (296)
303 PF00155 Aminotran_1_2: Aminot 31.5 3.2E+02 0.0069 23.7 8.4 85 125-215 91-191 (363)
304 PRK08249 cystathionine gamma-s 31.5 3.1E+02 0.0067 24.7 8.4 57 162-218 134-192 (398)
305 TIGR01118 lacA galactose-6-pho 31.3 2.4E+02 0.0053 21.6 10.9 96 106-213 9-106 (141)
306 PRK13109 flhB flagellar biosyn 31.3 14 0.00031 33.0 -0.3 42 195-236 301-342 (358)
307 PTZ00081 enolase; Provisional 31.1 4.3E+02 0.0093 24.4 10.7 97 106-211 281-382 (439)
308 KOG0059 Lipid exporter ABCA1 a 30.9 2.8E+02 0.006 28.1 8.6 69 106-176 670-767 (885)
309 TIGR01325 O_suc_HS_sulf O-succ 30.8 2.6E+02 0.0055 25.0 7.7 54 165-218 127-182 (380)
310 PF07994 NAD_binding_5: Myo-in 30.2 2.9E+02 0.0063 24.0 7.6 95 108-210 131-230 (295)
311 PRK12613 galactose-6-phosphate 30.2 2.5E+02 0.0055 21.5 10.2 95 106-213 9-105 (141)
312 PRK02227 hypothetical protein; 30.1 3.4E+02 0.0073 22.9 11.6 153 40-207 9-182 (238)
313 PRK08508 biotin synthase; Prov 30.0 3.5E+02 0.0076 23.0 10.2 68 106-175 40-110 (279)
314 PRK09454 ugpQ cytoplasmic glyc 29.7 3.3E+02 0.0071 22.6 13.8 60 154-213 139-217 (249)
315 cd01965 Nitrogenase_MoFe_beta_ 29.7 4.3E+02 0.0093 24.0 11.4 105 63-184 61-188 (428)
316 PLN02438 inositol-3-phosphate 29.5 3.2E+02 0.007 25.7 8.0 49 108-156 206-258 (510)
317 cd03328 MR_like_3 Mandelate ra 29.4 4E+02 0.0087 23.5 15.0 152 40-212 138-293 (352)
318 PRK07504 O-succinylhomoserine 29.4 3E+02 0.0065 24.8 7.9 62 158-219 131-194 (398)
319 PF00388 PI-PLC-X: Phosphatidy 29.4 38 0.00083 25.7 1.9 19 46-64 30-48 (146)
320 PF00762 Ferrochelatase: Ferro 29.4 1.6E+02 0.0036 25.7 6.0 52 108-160 206-258 (316)
321 PF00101 RuBisCO_small: Ribulo 29.3 2.2E+02 0.0047 20.4 8.4 77 36-135 8-85 (99)
322 KOG0369 Pyruvate carboxylase [ 29.2 3.7E+02 0.008 26.6 8.4 147 40-217 41-196 (1176)
323 PF08671 SinI: Anti-repressor 29.2 68 0.0015 17.6 2.3 16 42-57 3-18 (30)
324 TIGR00977 LeuA_rel 2-isopropyl 29.1 4.4E+02 0.0096 24.9 9.2 83 42-138 122-209 (526)
325 PF01081 Aldolase: KDPG and KH 29.1 1.2E+02 0.0027 24.6 4.8 86 108-210 19-106 (196)
326 COG2987 HutU Urocanate hydrata 28.9 1.2E+02 0.0025 28.2 4.9 104 68-185 148-266 (561)
327 cd00248 Mth938-like Mth938-lik 28.8 1.9E+02 0.0041 20.9 5.4 52 162-213 36-87 (109)
328 PRK12721 secretion system appa 28.8 17 0.00036 32.4 -0.3 42 195-236 292-333 (349)
329 COG1131 CcmA ABC-type multidru 28.8 1.6E+02 0.0035 25.4 5.8 61 112-175 142-205 (293)
330 PF13380 CoA_binding_2: CoA bi 28.7 2.3E+02 0.005 20.6 6.4 54 125-210 54-107 (116)
331 PRK05283 deoxyribose-phosphate 28.7 3.7E+02 0.008 22.9 9.9 137 37-187 21-169 (257)
332 TIGR00742 yjbN tRNA dihydrouri 28.7 4E+02 0.0087 23.3 10.9 133 40-184 65-222 (318)
333 COG0001 HemL Glutamate-1-semia 28.6 4.7E+02 0.01 24.1 12.4 138 40-210 70-239 (432)
334 TIGR02631 xylA_Arthro xylose i 28.5 4.4E+02 0.0096 23.7 13.2 41 22-62 7-52 (382)
335 TIGR03699 mena_SCO4550 menaqui 28.4 4E+02 0.0087 23.3 9.0 120 39-172 72-214 (340)
336 COG1540 Uncharacterized protei 28.3 77 0.0017 26.6 3.5 41 24-66 12-67 (252)
337 PRK02714 O-succinylbenzoate sy 28.3 4E+02 0.0087 23.2 15.4 158 42-218 120-278 (320)
338 PRK06084 O-acetylhomoserine am 28.2 3E+02 0.0065 25.1 7.8 55 165-219 131-187 (425)
339 PF02971 FTCD: Formiminotransf 28.2 1.8E+02 0.0038 22.5 5.2 44 157-212 39-88 (145)
340 cd00814 MetRS_core catalytic c 28.2 85 0.0018 27.4 4.0 47 108-157 68-114 (319)
341 PRK09028 cystathionine beta-ly 28.2 4.5E+02 0.0098 23.8 11.0 61 161-221 130-192 (394)
342 PRK08255 salicylyl-CoA 5-hydro 28.1 6.1E+02 0.013 25.2 14.1 158 38-207 540-737 (765)
343 COG0135 TrpF Phosphoribosylant 28.0 1.2E+02 0.0025 25.0 4.5 98 40-167 11-112 (208)
344 COG4130 Predicted sugar epimer 28.0 1.8E+02 0.0039 24.2 5.5 58 165-222 49-113 (272)
345 COG1167 ARO8 Transcriptional r 28.0 4.8E+02 0.01 24.0 13.6 149 39-215 104-270 (459)
346 PRK12928 lipoyl synthase; Prov 27.8 4E+02 0.0086 23.0 10.0 112 104-218 85-214 (290)
347 TIGR01163 rpe ribulose-phospha 27.7 3.1E+02 0.0067 21.7 9.8 98 106-208 8-107 (210)
348 cd00739 DHPS DHPS subgroup of 27.5 3.8E+02 0.0082 22.7 10.1 49 118-167 158-210 (257)
349 PRK15440 L-rhamnonate dehydrat 27.5 2E+02 0.0043 26.1 6.4 68 144-211 247-318 (394)
350 cd06450 DOPA_deC_like DOPA dec 27.5 4E+02 0.0086 22.8 14.5 161 36-219 7-192 (345)
351 PRK06552 keto-hydroxyglutarate 27.4 2.2E+02 0.0048 23.4 6.1 80 115-210 30-114 (213)
352 PRK07269 cystathionine gamma-s 27.3 1.4E+02 0.003 26.7 5.3 55 165-219 124-180 (364)
353 PF10171 DUF2366: Uncharacteri 27.2 1.5E+02 0.0033 23.6 4.9 51 113-166 67-117 (173)
354 PF03618 Kinase-PPPase: Kinase 27.1 3.9E+02 0.0085 22.7 8.2 74 41-131 9-85 (255)
355 PRK13561 putative diguanylate 27.1 3.2E+02 0.007 26.2 8.2 72 140-213 532-612 (651)
356 cd00945 Aldolase_Class_I Class 27.1 3E+02 0.0065 21.3 9.6 98 40-154 11-109 (201)
357 PRK08574 cystathionine gamma-s 27.1 2.4E+02 0.0053 25.3 6.9 54 166-219 125-181 (385)
358 PRK01222 N-(5'-phosphoribosyl) 27.0 2.5E+02 0.0055 22.9 6.4 49 106-165 64-112 (210)
359 TIGR01328 met_gam_lyase methio 27.0 3.8E+02 0.0083 24.0 8.1 55 165-219 132-188 (391)
360 PRK06702 O-acetylhomoserine am 26.9 4.1E+02 0.0089 24.4 8.4 51 165-215 135-187 (432)
361 PF00563 EAL: EAL domain; Int 26.9 2.2E+02 0.0048 22.7 6.2 94 111-213 104-211 (236)
362 PRK12702 mannosyl-3-phosphogly 26.9 4.3E+02 0.0094 23.1 8.5 151 40-212 19-176 (302)
363 PTZ00372 endonuclease 4-like p 26.7 2.8E+02 0.0061 25.4 7.1 117 42-163 218-347 (413)
364 PRK03031 rnpA ribonuclease P; 26.7 2.6E+02 0.0057 20.6 7.0 64 82-154 47-114 (122)
365 PRK08622 galactose-6-phosphate 26.4 3.3E+02 0.0072 21.6 10.9 97 106-212 9-107 (171)
366 cd03770 SR_TndX_transposase Se 26.3 1.3E+02 0.0028 22.7 4.3 52 112-163 54-106 (140)
367 TIGR00262 trpA tryptophan synt 26.3 4E+02 0.0086 22.5 9.7 71 141-213 71-149 (256)
368 PLN02907 glutamate-tRNA ligase 26.3 2.9E+02 0.0062 27.4 7.6 62 105-174 258-319 (722)
369 TIGR01290 nifB nitrogenase cof 26.2 5.2E+02 0.011 23.8 10.5 110 104-218 58-200 (442)
370 TIGR03569 NeuB_NnaB N-acetylne 26.2 4.6E+02 0.01 23.2 12.7 116 39-171 73-208 (329)
371 KOG2499 Beta-N-acetylhexosamin 26.1 64 0.0014 30.1 2.8 48 14-65 225-276 (542)
372 TIGR01862 N2-ase-Ialpha nitrog 25.8 5.2E+02 0.011 23.7 11.3 137 62-214 96-271 (443)
373 PRK08861 cystathionine gamma-s 25.7 4.9E+02 0.011 23.4 11.4 90 127-220 92-183 (388)
374 PRK08099 bifunctional DNA-bind 25.7 3.6E+02 0.0078 24.5 7.7 95 54-153 291-395 (399)
375 TIGR01326 OAH_OAS_sulfhy OAH/O 25.7 3.6E+02 0.0078 24.4 7.8 54 165-218 130-185 (418)
376 PRK06015 keto-hydroxyglutarate 25.5 3.7E+02 0.0081 21.9 7.9 48 39-90 13-60 (201)
377 TIGR01182 eda Entner-Doudoroff 25.3 3.8E+02 0.0082 21.9 8.1 47 39-89 17-63 (204)
378 TIGR00328 flhB flagellar biosy 25.3 22 0.00047 31.7 -0.2 42 195-236 292-333 (347)
379 PF04084 ORC2: Origin recognit 25.3 4.7E+02 0.01 23.0 9.2 112 50-165 49-177 (326)
380 PRK04390 rnpA ribonuclease P; 25.3 2.8E+02 0.0061 20.4 7.3 64 82-154 44-110 (120)
381 PRK06552 keto-hydroxyglutarate 25.2 3.8E+02 0.0083 21.9 8.5 50 39-90 22-72 (213)
382 COG2055 Malate/L-lactate dehyd 25.1 5E+02 0.011 23.2 8.3 88 106-211 6-114 (349)
383 PRK10200 putative racemase; Pr 25.0 3.2E+02 0.007 22.6 6.8 63 107-170 15-89 (230)
384 cd00502 DHQase_I Type I 3-dehy 24.9 3.8E+02 0.0083 21.8 12.4 112 39-166 73-184 (225)
385 PRK06256 biotin synthase; Vali 24.9 4.6E+02 0.01 22.8 12.2 136 39-191 91-240 (336)
386 PRK11059 regulatory protein Cs 24.9 6.2E+02 0.014 24.3 10.0 71 140-213 531-611 (640)
387 TIGR03821 AblA_like_1 lysine-2 24.8 4.7E+02 0.01 22.9 11.4 109 108-219 127-247 (321)
388 TIGR00715 precor6x_red precorr 24.8 4.3E+02 0.0093 22.4 13.1 72 44-129 12-98 (256)
389 TIGR02133 RPI_actino ribose 5- 24.8 3.3E+02 0.0071 21.0 8.9 100 106-214 9-110 (148)
390 PRK07114 keto-hydroxyglutarate 24.8 4E+02 0.0088 22.1 8.2 49 40-90 25-75 (222)
391 PRK14470 ribosomal RNA large s 24.7 4.9E+02 0.011 23.0 9.1 87 129-215 207-321 (336)
392 COG5310 Homospermidine synthas 24.7 5.1E+02 0.011 23.2 9.1 168 18-210 13-211 (481)
393 PF03599 CdhD: CO dehydrogenas 24.6 4.3E+02 0.0094 24.0 7.8 85 126-215 69-154 (386)
394 COG2185 Sbm Methylmalonyl-CoA 24.6 1.3E+02 0.0029 23.1 4.0 24 195-220 81-104 (143)
395 PRK05994 O-acetylhomoserine am 24.6 4E+02 0.0086 24.3 7.9 57 162-218 133-191 (427)
396 PRK14464 ribosomal RNA large s 24.5 5.1E+02 0.011 23.1 8.3 84 139-222 223-329 (344)
397 cd00668 Ile_Leu_Val_MetRS_core 24.5 1.2E+02 0.0026 26.3 4.2 49 108-159 81-131 (312)
398 cd07937 DRE_TIM_PC_TC_5S Pyruv 24.4 4.4E+02 0.0096 22.4 10.1 81 40-137 116-202 (275)
399 TIGR01501 MthylAspMutase methy 24.3 3.2E+02 0.0069 20.7 14.8 114 40-173 13-127 (134)
400 PRK08134 O-acetylhomoserine am 24.3 4.5E+02 0.0098 24.1 8.2 54 166-219 138-193 (433)
401 PHA01346 hypothetical protein 24.2 81 0.0018 18.8 2.1 22 103-124 29-50 (53)
402 TIGR03858 LLM_2I7G probable ox 24.2 2.2E+02 0.0048 24.9 6.0 45 106-153 286-330 (337)
403 cd08206 RuBisCO_large_I_II_III 24.0 5.7E+02 0.012 23.5 9.8 20 40-59 146-165 (414)
404 TIGR01120 rpiB ribose 5-phosph 24.0 3.4E+02 0.0073 20.9 11.7 97 106-212 8-106 (143)
405 cd08620 PI-PLCXDc_like_1 Catal 23.9 3.2E+02 0.007 23.5 6.7 20 46-65 34-53 (281)
406 PRK09389 (R)-citramalate synth 23.9 6.1E+02 0.013 23.8 11.1 26 38-63 20-45 (488)
407 PF07905 PucR: Purine cataboli 23.7 2.6E+02 0.0057 20.4 5.5 17 195-211 89-105 (123)
408 PTZ00402 glutamyl-tRNA synthet 23.4 4.2E+02 0.0091 25.6 7.8 61 107-174 99-159 (601)
409 KOG2264 Exostosin EXT1L [Signa 23.3 2.3E+02 0.0049 27.2 5.8 55 68-138 632-688 (907)
410 cd00812 LeuRS_core catalytic c 23.2 1.4E+02 0.003 26.0 4.4 50 108-158 68-117 (314)
411 PRK12773 flhB flagellar biosyn 23.2 26 0.00056 33.6 -0.2 42 195-236 591-632 (646)
412 PRK14476 nitrogenase molybdenu 23.2 6E+02 0.013 23.5 11.6 104 63-183 72-200 (455)
413 PRK09108 type III secretion sy 23.2 29 0.00064 31.0 0.2 41 195-236 294-334 (353)
414 KOG3206 Alpha-tubulin folding 23.1 40 0.00088 27.6 0.9 13 54-66 199-211 (234)
415 PRK06920 dnaE DNA polymerase I 23.0 2.5E+02 0.0055 29.3 6.7 93 144-246 280-390 (1107)
416 PRK11893 methionyl-tRNA synthe 22.9 1.3E+02 0.0027 28.1 4.4 49 108-159 69-117 (511)
417 PF04967 HTH_10: HTH DNA bindi 22.9 2E+02 0.0044 18.0 5.7 30 44-79 5-34 (53)
418 COG0647 NagD Predicted sugar p 22.9 4.9E+02 0.011 22.3 7.6 115 40-163 25-155 (269)
419 PRK11267 biopolymer transport 22.8 2.2E+02 0.0047 21.6 4.9 54 106-164 81-134 (141)
420 PRK08599 coproporphyrinogen II 22.8 5.4E+02 0.012 22.8 10.5 66 110-175 97-174 (377)
421 PF14606 Lipase_GDSL_3: GDSL-l 22.8 4E+02 0.0087 21.3 7.9 109 18-136 33-146 (178)
422 TIGR00238 KamA family protein. 22.7 5.3E+02 0.011 22.7 11.7 77 144-221 178-266 (331)
423 PF01680 SOR_SNZ: SOR/SNZ fami 22.7 52 0.0011 26.5 1.4 19 117-135 87-105 (208)
424 COG1625 Fe-S oxidoreductase, r 22.6 4.6E+02 0.01 24.0 7.5 118 44-167 96-223 (414)
425 TIGR03278 methan_mark_10 putat 22.6 5.9E+02 0.013 23.2 9.2 128 27-165 75-205 (404)
426 PRK11858 aksA trans-homoaconit 22.5 5.7E+02 0.012 22.9 13.5 24 39-62 23-46 (378)
427 PRK14040 oxaloacetate decarbox 22.5 7.1E+02 0.015 24.0 13.4 148 39-204 94-253 (593)
428 COG2109 BtuR ATP:corrinoid ade 22.4 4.3E+02 0.0094 21.5 8.0 65 108-173 104-173 (198)
429 PRK14469 ribosomal RNA large s 22.3 5.5E+02 0.012 22.7 10.6 92 123-214 205-323 (343)
430 cd00959 DeoC 2-deoxyribose-5-p 22.2 4.2E+02 0.0091 21.3 15.5 131 39-185 14-151 (203)
431 TIGR01861 ANFD nitrogenase iro 22.1 6.8E+02 0.015 23.7 10.3 137 63-214 107-282 (513)
432 PRK05702 flhB flagellar biosyn 22.0 27 0.00058 31.3 -0.3 42 195-236 299-340 (359)
433 TIGR00539 hemN_rel putative ox 22.0 2.1E+02 0.0047 25.3 5.5 67 109-175 96-174 (360)
434 PRK11194 ribosomal RNA large s 21.9 5.9E+02 0.013 22.9 9.0 92 131-222 221-349 (372)
435 cd01573 modD_like ModD; Quinol 21.9 3.6E+02 0.0077 23.1 6.6 63 146-211 172-236 (272)
436 COG0422 ThiC Thiamine biosynth 21.9 6.1E+02 0.013 23.1 8.6 105 39-160 75-181 (432)
437 PRK12383 putative mutase; Prov 21.8 5.2E+02 0.011 23.6 7.9 84 129-215 151-254 (406)
438 PRK08064 cystathionine beta-ly 21.8 4.9E+02 0.011 23.3 7.8 62 156-219 119-182 (390)
439 PRK08649 inosine 5-monophospha 21.8 5.5E+02 0.012 23.1 8.0 16 195-210 177-192 (368)
440 PRK07812 O-acetylhomoserine am 21.7 5.1E+02 0.011 23.8 8.0 55 165-219 143-199 (436)
441 PF14542 Acetyltransf_CG: GCN5 21.7 28 0.00061 23.6 -0.2 29 195-223 45-73 (78)
442 smart00857 Resolvase Resolvase 21.7 2.8E+02 0.006 20.6 5.4 51 112-163 51-102 (148)
443 PRK08084 DNA replication initi 21.7 3.2E+02 0.007 22.5 6.2 45 126-170 97-145 (235)
444 cd00818 IleRS_core catalytic c 21.6 1.2E+02 0.0025 26.8 3.7 47 109-158 87-135 (338)
445 COG3287 Uncharacterized conser 21.6 1.9E+02 0.0042 26.1 5.0 52 111-164 15-66 (379)
446 cd01967 Nitrogenase_MoFe_alpha 21.5 5.9E+02 0.013 22.8 12.9 136 63-214 67-240 (406)
447 PRK14338 (dimethylallyl)adenos 21.5 6.5E+02 0.014 23.2 11.3 123 39-176 184-330 (459)
448 PF01964 ThiC: ThiC family; I 21.5 1.8E+02 0.0039 26.5 4.7 103 40-159 74-178 (420)
449 PRK09856 fructoselysine 3-epim 21.5 2.4E+02 0.0053 23.5 5.6 53 165-217 13-72 (275)
450 KOG1939 Oxoprolinase [Amino ac 21.4 1E+02 0.0022 30.8 3.4 59 38-96 164-224 (1247)
451 PRK08636 aspartate aminotransf 21.4 3E+02 0.0065 24.6 6.4 19 195-213 198-216 (403)
452 PRK09413 IS2 repressor TnpA; R 21.2 1.4E+02 0.003 21.9 3.5 42 38-81 12-53 (121)
453 PLN02746 hydroxymethylglutaryl 21.2 5.9E+02 0.013 22.7 16.2 27 38-64 64-90 (347)
454 PRK08156 type III secretion sy 21.2 28 0.00061 31.2 -0.3 42 195-236 287-328 (361)
455 PF01527 HTH_Tnp_1: Transposas 21.0 22 0.00047 23.5 -0.9 40 39-80 7-46 (76)
456 TIGR00126 deoC deoxyribose-pho 20.9 4.7E+02 0.01 21.4 16.2 133 37-185 13-152 (211)
457 PRK14463 ribosomal RNA large s 20.9 4.7E+02 0.01 23.2 7.4 71 103-175 128-203 (349)
458 PRK12468 flhB flagellar biosyn 20.9 30 0.00065 31.3 -0.2 41 195-235 299-339 (386)
459 PRK12772 bifunctional flagella 20.9 30 0.00066 33.3 -0.2 42 195-236 555-596 (609)
460 cd08590 PI-PLCc_Rv2075c_like C 20.9 5.3E+02 0.011 22.0 7.5 20 143-162 150-169 (267)
461 cd00338 Ser_Recombinase Serine 20.9 2E+02 0.0043 20.9 4.4 51 112-163 51-102 (137)
462 COG0223 Fmt Methionyl-tRNA for 20.8 2.3E+02 0.0049 24.9 5.1 55 156-211 3-63 (307)
463 PRK11024 colicin uptake protei 20.8 2.3E+02 0.005 21.4 4.7 52 107-163 86-137 (141)
464 PLN02522 ATP citrate (pro-S)-l 20.8 2.2E+02 0.0049 27.5 5.5 86 68-160 234-326 (608)
465 cd00885 cinA Competence-damage 20.7 2.5E+02 0.0054 22.0 5.1 43 45-90 21-65 (170)
466 TIGR00238 KamA family protein. 20.6 5.9E+02 0.013 22.4 10.1 102 41-157 144-252 (331)
467 PLN03233 putative glutamate-tR 20.6 2.6E+02 0.0056 26.5 5.8 61 106-174 57-117 (523)
468 PF08303 tRNA_lig_kinase: tRNA 20.5 4.4E+02 0.0096 20.9 12.2 102 56-172 26-137 (168)
469 cd00671 ArgRS_core catalytic c 20.4 2.2E+02 0.0047 23.1 4.9 46 108-158 67-112 (212)
470 PF01312 Bac_export_2: FlhB Hr 20.4 22 0.00047 31.6 -1.2 41 195-235 294-334 (343)
471 cd01320 ADA Adenosine deaminas 20.4 5.5E+02 0.012 22.0 10.2 107 106-212 66-193 (325)
472 PTZ00413 lipoate synthase; Pro 20.4 6.6E+02 0.014 22.9 11.3 160 38-216 176-373 (398)
473 TIGR03586 PseI pseudaminic aci 20.4 6E+02 0.013 22.4 12.1 130 39-188 74-225 (327)
474 PLN02321 2-isopropylmalate syn 20.4 8.1E+02 0.018 23.9 9.8 85 42-138 210-298 (632)
475 COG0274 DeoC Deoxyribose-phosp 20.3 5.2E+02 0.011 21.6 8.2 76 39-125 137-212 (228)
476 PRK12615 galactose-6-phosphate 20.3 4.5E+02 0.0097 20.9 11.2 97 106-212 9-107 (171)
477 PF02525 Flavodoxin_2: Flavodo 20.3 4.4E+02 0.0095 20.8 9.8 101 41-152 94-196 (199)
478 PRK04820 rnpA ribonuclease P; 20.3 4.1E+02 0.0088 20.4 7.0 64 82-154 48-114 (145)
479 COG0623 FabI Enoyl-[acyl-carri 20.3 2.2E+02 0.0047 24.1 4.6 22 40-61 17-38 (259)
480 PRK11815 tRNA-dihydrouridine s 20.2 6E+02 0.013 22.3 9.6 133 40-184 75-232 (333)
481 PRK10060 RNase II stability mo 20.2 7.9E+02 0.017 23.8 12.1 111 109-223 507-644 (663)
482 PRK00260 cysS cysteinyl-tRNA s 20.2 2.3E+02 0.005 26.2 5.4 91 42-158 45-136 (463)
483 TIGR03558 oxido_grp_1 lucifera 20.0 2.9E+02 0.0062 24.0 5.8 41 106-151 280-320 (323)
No 1
>COG0667 Tas Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) [Energy production and conversion]
Probab=100.00 E-value=4.2e-54 Score=374.34 Aligned_cols=217 Identities=44% Similarity=0.719 Sum_probs=197.2
Q ss_pred CCceecCCCCcccCcceeecccccCCCCCCCCHHHHHHHHHHHHHcCCCeEeCCCCcCCCchHHHHHHHHHcCC-CCCeE
Q 025707 9 VPRVKLGTQGLEVSKLGYGCMSLSGCYNSPLSEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELP-RENIQ 87 (249)
Q Consensus 9 m~~~~lg~~g~~vs~lg~Gt~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~g~se~~lg~~l~~~~-r~~~~ 87 (249)
|++|++|++|++||+||||||++|+. ....+++++.++|++|+++||||||||+.||.|.||++||++|+..+ |++++
T Consensus 1 m~~r~lG~~gl~vs~lglG~~~~g~~-~~~~~~~~a~~il~~A~d~Gin~~DTA~~Yg~g~sE~ilG~~l~~~~~Rd~vv 79 (316)
T COG0667 1 MKYRRLGRSGLKVSPLGLGTMTLGGD-TDDEEEAEAIEILDAALDAGINFFDTADVYGDGRSEEILGEALKERGRRDKVV 79 (316)
T ss_pred CCceecCCCCceecceeeeccccCCC-CCchhhhHHHHHHHHHHHcCCCEEECccccCCCchHHHHHHHHhccCCCCeEE
Confidence 78999999999999999999999985 23335667888999999999999999999999999999999999744 89999
Q ss_pred EEecccccccCCccc-ccCCCHHHHHHHHHHHHHHcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCC
Q 025707 88 VATKFGFVELGFTSV-IVKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEAS 166 (249)
Q Consensus 88 I~tK~~~~~~~~~~~-~~~~s~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~ 166 (249)
|+||++.....+... ..+.++++|+++++.||+|||+||||+|++|++|...+.++++++|++|+++|+||+||+||++
T Consensus 80 IaTK~g~~~~~~~~~~~~~~s~~~i~~~v~~SL~RLgtd~IDl~~iH~~d~~~p~~e~~~aL~~l~~~G~ir~iG~S~~~ 159 (316)
T COG0667 80 IATKVGYRPGDPGPNGVFGLSRDHIRRAVEASLKRLGTDYIDLYQLHRPDPETPIEETLEALDELVREGKIRYIGVSNYS 159 (316)
T ss_pred EEEeeccCCCCCCCCccCCCCHHHHHHHHHHHHHHhCCCceeEEEeCCCCCCCCHHHHHHHHHHHHHcCCeeEEEecCCC
Confidence 999998765321111 2567999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhc-CCceEEeeecCccccchhhhHHHHHHHhCCcEEecccCcccccCCCCCCC
Q 025707 167 PDTIRRAHAV-HPITAVQLEWSLWARDIENEIVPLCRELGIGIVPYCPLGRGFFGGKAVVE 226 (249)
Q Consensus 167 ~~~l~~~~~~-~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~spl~~G~l~g~~~~~ 226 (249)
.++++++++. .+++++|.+||+++|..+.+++++|+++||++++||||++|+|+||+...
T Consensus 160 ~~~i~~a~~~~~~~~~~Q~~ynl~~R~~e~~l~~~~~~~gi~~~~~spla~G~Ltgk~~~~ 220 (316)
T COG0667 160 AEQIAEALAVAAPIDSLQPEYNLLERDAEKELLPLCREEGIGLLAYSPLASGLLTGKYLPG 220 (316)
T ss_pred HHHHHHHHHhcCCceeecccCccccccchhHHHHHHHHcCCeEEEecCccccccCCCcCCC
Confidence 9999999999 69999999999999876677999999999999999999999999996653
No 2
>KOG1575 consensus Voltage-gated shaker-like K+ channel, subunit beta/KCNAB [Energy production and conversion]
Probab=100.00 E-value=4.9e-52 Score=356.17 Aligned_cols=233 Identities=45% Similarity=0.716 Sum_probs=208.0
Q ss_pred ccCCceecCCCCcccCcceeecccccCCCCCCCCHHHHHHHHHHHHHcCCCeEeCCCCcCCCchHHHHHHHHHc--CCCC
Q 025707 7 LQVPRVKLGTQGLEVSKLGYGCMSLSGCYNSPLSEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKE--LPRE 84 (249)
Q Consensus 7 ~~m~~~~lg~~g~~vs~lg~Gt~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~g~se~~lg~~l~~--~~r~ 84 (249)
..|+|+++|++|++||++|||||.+.. |+.+.+++++.+++++|+++|+|+||||++||.+.||..+|+++++ .+|+
T Consensus 10 ~~~~~~~lg~~gl~Vs~lglG~m~~~~-~~~~~~~e~a~~~m~~a~e~Gin~fDtAe~Yg~~~~E~llg~~i~~~~~~R~ 88 (336)
T KOG1575|consen 10 LGMLRRKLGNSGLKVSPLGLGCMGWTT-FGGQIDKEEAFELLDHAYEAGINFFDTAEVYGNGQSEELLGEFIKSRGWRRD 88 (336)
T ss_pred hcceeeeccCCCceecceeecceeeec-cccCCCHHHHHHHHHHHHHcCCCEEehhhhcCCcccHHHHHHHHHhcCCcCC
Confidence 368999999999999999999975544 5556899999999999999999999999999999999999999998 7899
Q ss_pred CeEEEecccccccCCcccccCCCHHHHHHHHHHHHHHcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCCeeEEEcCC
Q 025707 85 NIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSE 164 (249)
Q Consensus 85 ~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~ 164 (249)
+++|+||++.... .......+..++.+.++.|++||+++|||+|++||+|...++++++++|.+++++|+|++||+|+
T Consensus 89 ~vviaTK~~~~~~--~~~~~G~~~~~i~~~~~~s~~rl~~~~IDl~q~Hr~D~~~piee~m~aL~~lve~Gki~yiGlSe 166 (336)
T KOG1575|consen 89 KVVIATKFGFDYG--GETPRGLSRKHIIEGVRDSLRRLQTDYIDLLQVHRWDPMVPIEETMRALTDLVEQGKIRYWGLSE 166 (336)
T ss_pred cEEEEEEEeccCC--CcCCCCCcHHHHHHHHHHHHHhcCCCeeEEEEEcccCCCCCHHHHHHHHHHHHhcCceEEEEecc
Confidence 9999999987662 22245677899999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHhhcCC--ceEEeeecCccccchh-hhHHHHHHHhCCcEEecccCcccccCCCCC-CCCCCCCcccccCCCc
Q 025707 165 ASPDTIRRAHAVHP--ITAVQLEWSLWARDIE-NEIVPLCRELGIGIVPYCPLGRGFFGGKAV-VESVPLDSFLVCFSSI 240 (249)
Q Consensus 165 ~~~~~l~~~~~~~~--~~~~q~~~n~~~~~~~-~~~~~~~~~~gi~v~a~spl~~G~l~g~~~-~~~~~~~~~~~~~~~~ 240 (249)
++.+++.+++...+ +.++|++||++.|+.+ .++++.|++.||++++||||++|+||||+. .++.+..+.+..++.+
T Consensus 167 ~sa~~I~~a~~~~~~p~~s~Q~eysl~~Rd~ee~~i~~~c~~~Gi~li~ysPL~~G~Ltgk~~~~e~~~~~~~~~~~~~~ 246 (336)
T KOG1575|consen 167 WSAEEIREAHAVAPIPIVAVQVEYSLLSRDKEERGIIPLCRELGIGLIAWSPLGRGLLTGKYKLGEDSRNGDKRFQFLGL 246 (336)
T ss_pred CCHHHHHHHHHhcCCCceEeeeechhhhcchhhhhHHHHHHHcCcceEEecccccceeccCccccccccccccccccccc
Confidence 99999999999876 9999999999999855 669999999999999999999999999944 4666676665555444
Q ss_pred ce
Q 025707 241 SV 242 (249)
Q Consensus 241 ~~ 242 (249)
..
T Consensus 247 ~~ 248 (336)
T KOG1575|consen 247 SP 248 (336)
T ss_pred cc
Confidence 33
No 3
>PRK10625 tas putative aldo-keto reductase; Provisional
Probab=100.00 E-value=6.2e-49 Score=347.34 Aligned_cols=213 Identities=27% Similarity=0.382 Sum_probs=183.1
Q ss_pred CCceecCCCCcccCcceeecccccCCCCCCCCHHHHHHHHHHHHHcCCCeEeCCCCcC-------CCchHHHHHHHHHc-
Q 025707 9 VPRVKLGTQGLEVSKLGYGCMSLSGCYNSPLSEEDGISIIKHAFSKGITFFDTADKYG-------PYTNEILLGKALKE- 80 (249)
Q Consensus 9 m~~~~lg~~g~~vs~lg~Gt~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg-------~g~se~~lg~~l~~- 80 (249)
|+||+||++|++||.||||||++|. ..+++++.++|+.|++.|||+||||+.|| .|.+|+.+|++|+.
T Consensus 1 m~~r~lg~t~~~vs~iglGt~~~g~----~~~~~~a~~~l~~al~~Gi~~~DTA~~Yg~~~~~~~~g~sE~~iG~aL~~~ 76 (346)
T PRK10625 1 MQYHRIPHSSLEVSTLGLGTMTFGE----QNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQGLTETYIGNWLAKR 76 (346)
T ss_pred CCceecCCCCCccccEeEeccccCC----CCCHHHHHHHHHHHHHcCCCEEECccccCCCcCCCCCCchHHHHHHHHhhc
Confidence 7899999999999999999999764 34689999999999999999999999998 47899999999985
Q ss_pred CCCCCeEEEecccccccC-Ccc--cccCCCHHHHHHHHHHHHHHcCCCceeEEEeecCCC-----------------CCC
Q 025707 81 LPRENIQVATKFGFVELG-FTS--VIVKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDT-----------------SVP 140 (249)
Q Consensus 81 ~~r~~~~I~tK~~~~~~~-~~~--~~~~~s~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~-----------------~~~ 140 (249)
..|++++|+||++..... ... .....+++.+++++++||+|||+||||+|++|+|+. ..+
T Consensus 77 ~~R~~v~i~TK~~~~~~~~~~~~~~~~~~s~~~i~~~~e~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~ 156 (346)
T PRK10625 77 GSREKLIIASKVSGPSRNNDKGIRPNQALDRKNIREALHDSLKRLQTDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVS 156 (346)
T ss_pred CCcceEEEEcccccCCcCCCCCcCCCCCCCHHHHHHHHHHHHHHhCCCeEeEEEeeccCcccccccccccccccccCCCC
Confidence 469999999998632110 000 012468999999999999999999999999999864 245
Q ss_pred HHHHHHHHHHHHHcCCeeEEEcCCCCHHHHHHHhhc------CCceEEeeecCccccchhhhHHHHHHHhCCcEEecccC
Q 025707 141 IEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAV------HPITAVQLEWSLWARDIENEIVPLCRELGIGIVPYCPL 214 (249)
Q Consensus 141 ~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~------~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~spl 214 (249)
++++|++|++|+++|+|++||+||++.++++++... ..+.++|++||++++..+.+++++|+++||++++|+||
T Consensus 157 ~~e~~~aL~~l~~~GkIr~iGvSn~~~~~l~~~~~~~~~~~~~~~~~~q~~y~l~~r~~~~~ll~~~~~~gi~via~spL 236 (346)
T PRK10625 157 LLETLDALAEQQRAGKIRYIGVSNETAFGVMRYLHLAEKHDLPRIVTIQNPYSLLNRSFEVGLAEVSQYEGVELLAYSCL 236 (346)
T ss_pred HHHHHHHHHHHHHCCCeEEEEecCCCHHHHHHHHHHHHHcCCCCcEEecCCCCcccccchhHHHHHHHHcCCeEEEeccc
Confidence 789999999999999999999999999988776432 35788999999999876678999999999999999999
Q ss_pred cccccCCCCCC
Q 025707 215 GRGFFGGKAVV 225 (249)
Q Consensus 215 ~~G~l~g~~~~ 225 (249)
++|+|++++..
T Consensus 237 ~~G~Ltg~~~~ 247 (346)
T PRK10625 237 AFGTLTGKYLN 247 (346)
T ss_pred cCeeccCCCCC
Confidence 99999998543
No 4
>PRK09912 L-glyceraldehyde 3-phosphate reductase; Provisional
Probab=100.00 E-value=1.4e-48 Score=344.85 Aligned_cols=216 Identities=29% Similarity=0.528 Sum_probs=187.0
Q ss_pred ccccCCceecCCCCcccCcceeecccccCCCCCCCCHHHHHHHHHHHHHcCCCeEeCCCCcCC--CchHHHHHHHHHc--
Q 025707 5 KKLQVPRVKLGTQGLEVSKLGYGCMSLSGCYNSPLSEEDGISIIKHAFSKGITFFDTADKYGP--YTNEILLGKALKE-- 80 (249)
Q Consensus 5 ~~~~m~~~~lg~~g~~vs~lg~Gt~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~--g~se~~lg~~l~~-- 80 (249)
-+..|++|+||++|++||+||||||+. +|...+.+++.++|+.|+++|||+||||+.||+ |.+|+.+|++|++
T Consensus 9 ~~~~m~~r~lg~tg~~vs~lglG~~~~---~g~~~~~~~~~~~l~~A~~~Gin~~DTA~~YG~~~g~sE~~lG~~l~~~~ 85 (346)
T PRK09912 9 RYGQMQYRYCGKSGLRLPALSLGLWHN---FGHVNALESQRAILRKAFDLGITHFDLANNYGPPPGSAEENFGRLLREDF 85 (346)
T ss_pred CCCCcceeecCCCCcccccccccCccc---cCCCCCHHHHHHHHHHHHHCCCCEEEChhhhCCCCCCcHHHHHHHHHhcc
Confidence 346799999999999999999999962 333346788999999999999999999999994 8899999999985
Q ss_pred -CCCCCeEEEecccccccCCcccccCCCHHHHHHHHHHHHHHcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCCeeE
Q 025707 81 -LPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKY 159 (249)
Q Consensus 81 -~~r~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~ 159 (249)
..|++++|+||++.....+ ......+++.+++++++||+|||+||||+|++|+|+...++++++++|++|+++|+||+
T Consensus 86 ~~~Rd~~~I~TK~g~~~~~~-~~~~~~s~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~~~~~e~~~al~~l~~~GkIr~ 164 (346)
T PRK09912 86 AAYRDELIISTKAGYDMWPG-PYGSGGSRKYLLASLDQSLKRMGLEYVDIFYSHRVDENTPMEETASALAHAVQSGKALY 164 (346)
T ss_pred cCCCCeEEEEEEecccCCCC-cCCCCCCHHHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCeeE
Confidence 2699999999987531111 01124679999999999999999999999999999988889999999999999999999
Q ss_pred EEcCCCCHHHHHHHhhc-----CCceEEeeecCccccchh-hhHHHHHHHhCCcEEecccCcccccCCCCC
Q 025707 160 IGLSEASPDTIRRAHAV-----HPITAVQLEWSLWARDIE-NEIVPLCRELGIGIVPYCPLGRGFFGGKAV 224 (249)
Q Consensus 160 iGvs~~~~~~l~~~~~~-----~~~~~~q~~~n~~~~~~~-~~~~~~~~~~gi~v~a~spl~~G~l~g~~~ 224 (249)
||+|||++++++++.+. .++.++|++||++++..+ .+++++|+++||+|++|+||++|+|++++.
T Consensus 165 iGvSn~~~~~~~~~~~~~~~~~~~~~~~Q~~ynll~~~~~~~~ll~~~~~~gI~via~spl~~G~Lt~~~~ 235 (346)
T PRK09912 165 VGISSYSPERTQKMVELLREWKIPLLIHQPSYNLLNRWVDKSGLLDTLQNNGVGCIAFTPLAQGLLTGKYL 235 (346)
T ss_pred EEecCCCHHHHHHHHHHHHhcCCCcEEeeccCCceecccchhhHHHHHHHcCceEEEehhhcCccccCCCC
Confidence 99999999988766542 367899999999998654 579999999999999999999999999853
No 5
>COG0656 ARA1 Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]
Probab=100.00 E-value=7.4e-50 Score=336.68 Aligned_cols=216 Identities=29% Similarity=0.495 Sum_probs=188.5
Q ss_pred CCceecCCCCcccCcceeecccccCCCCCCCCHHHHHHHHHHHHHcCCCeEeCCCCcCCCchHHHHHHHHHc--CCCCCe
Q 025707 9 VPRVKLGTQGLEVSKLGYGCMSLSGCYNSPLSEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKE--LPRENI 86 (249)
Q Consensus 9 m~~~~lg~~g~~vs~lg~Gt~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~g~se~~lg~~l~~--~~r~~~ 86 (249)
+.+.++ ++|.+||.||||||++++ .+...+.+.+|++.|+|+||||..|| +|+.+|+++++ .+|+++
T Consensus 3 ~~~~~l-~~g~~iP~iGlGt~~~~~-------~~~~~~av~~Al~~Gyr~IDTA~~Yg---nE~~VG~aI~~s~v~Reel 71 (280)
T COG0656 3 KTKVTL-NNGVEIPAIGLGTWQIGD-------DEWAVRAVRAALELGYRLIDTAEIYG---NEEEVGEAIKESGVPREEL 71 (280)
T ss_pred Cceeec-CCCCcccCcceEeeecCC-------chhHHHHHHHHHHhCcceEecHhHhc---CHHHHHHHHHhcCCCHHHe
Confidence 445667 568889999999999765 23389999999999999999999999 99999999998 789999
Q ss_pred EEEecccccccCCcccccCCCHHHHHHHHHHHHHHcCCCceeEEEeecCCCC--CCHHHHHHHHHHHHHcCCeeEEEcCC
Q 025707 87 QVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTS--VPIEETIGEMKKLVEEGKIKYIGLSE 164 (249)
Q Consensus 87 ~I~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~--~~~~~~~~~l~~l~~~G~ir~iGvs~ 164 (249)
||+||+|... .+.+.+.+++++||++||+||+|||++|||... ..+.++|++|++++++|+||+|||||
T Consensus 72 FittKvw~~~---------~~~~~~~~a~e~Sl~rLg~dyvDLyLiHwP~~~~~~~~~etw~alE~l~~~G~ir~IGVSN 142 (280)
T COG0656 72 FITTKVWPSD---------LGYDETLKALEASLKRLGLDYVDLYLIHWPVPNKYVVIEETWKALEELVDEGLIRAIGVSN 142 (280)
T ss_pred EEEeecCCcc---------CCcchHHHHHHHHHHHhCCCceeEEEECCCCCccCccHHHHHHHHHHHHhcCCccEEEeeC
Confidence 9999999764 568899999999999999999999999999753 33789999999999999999999999
Q ss_pred CCHHHHHHHhhc--CCceEEeeecCccccchhhhHHHHHHHhCCcEEecccCcccc-cCCCCCCCCCCCCcccccCCCcc
Q 025707 165 ASPDTIRRAHAV--HPITAVQLEWSLWARDIENEIVPLCRELGIGIVPYCPLGRGF-FGGKAVVESVPLDSFLVCFSSIS 241 (249)
Q Consensus 165 ~~~~~l~~~~~~--~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~spl~~G~-l~g~~~~~~~~~~~~~~~~~~~~ 241 (249)
|+.++++++++. ..+.++|++||++.+. .+++++|+++||.++|||||++|. +...+....+++ .+.++.+|+.
T Consensus 143 F~~~~L~~l~~~~~~~p~~NQIe~hp~~~q--~el~~~~~~~gI~v~AysPL~~g~~l~~~~~l~~Ia~-k~g~t~AQv~ 219 (280)
T COG0656 143 FGVEHLEELLSLAKVKPAVNQIEYHPYLRQ--PELLPFCQRHGIAVEAYSPLAKGGKLLDNPVLAEIAK-KYGKTPAQVA 219 (280)
T ss_pred CCHHHHHHHHHhcCCCCceEEEEeccCCCc--HHHHHHHHHcCCEEEEECCcccccccccChHHHHHHH-HhCCCHHHHH
Confidence 999999999887 4589999999999986 459999999999999999999654 555544455555 6766889999
Q ss_pred eeeeee
Q 025707 242 VSFCFI 247 (249)
Q Consensus 242 ~~~~~~ 247 (249)
+||+..
T Consensus 220 L~W~i~ 225 (280)
T COG0656 220 LRWHIQ 225 (280)
T ss_pred HHHHHh
Confidence 999864
No 6
>cd06660 Aldo_ket_red Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial applications. Members have very distinct functions and include the prokaryotic 2,5-diketo-D-gluconic acid reductases and beta-keto ester reductases, the eukaryotic aldose reductases, aldehyde reductases, hydroxysteroid dehydrogenases, steroid 5beta-reductases, potassium channel beta-subunits and aflatoxin aldehyde reductases, among others.
Probab=100.00 E-value=6.6e-49 Score=338.28 Aligned_cols=231 Identities=40% Similarity=0.643 Sum_probs=202.2
Q ss_pred ceecCCCCcccCcceeecccccCCCCCCCCHHHHHHHHHHHHHcCCCeEeCCCCcCCCchHHHHHHHHHcCC-CCCeEEE
Q 025707 11 RVKLGTQGLEVSKLGYGCMSLSGCYNSPLSEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELP-RENIQVA 89 (249)
Q Consensus 11 ~~~lg~~g~~vs~lg~Gt~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~g~se~~lg~~l~~~~-r~~~~I~ 89 (249)
+|+||++|++||+||||||+++..| .+.+++.++++.|++.|||+||||+.||+|.+|+.+|++|+..+ |++++|+
T Consensus 1 ~r~lg~tg~~vs~lg~G~~~~~~~~---~~~~~~~~~l~~A~~~Gi~~iDTA~~Yg~g~sE~~lG~al~~~~~R~~~~i~ 77 (285)
T cd06660 1 YRTLGKTGLKVSRLGLGTWQLGGGY---VDEEEAAAAVRAALDAGINFIDTADVYGDGESEELLGEALKERGPREEVFIA 77 (285)
T ss_pred CcccCCCCceecCcceeccccCCCC---CCHHHHHHHHHHHHHcCCCeEECccccCCCCCHHHHHHHHhccCCcCcEEEE
Confidence 5789999999999999999988755 47899999999999999999999999999999999999999755 9999999
Q ss_pred ecccccccCCcccccCCCHHHHHHHHHHHHHHcCCCceeEEEeecCCCCCC-HHHHHHHHHHHHHcCCeeEEEcCCCCHH
Q 025707 90 TKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVP-IEETIGEMKKLVEEGKIKYIGLSEASPD 168 (249)
Q Consensus 90 tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~-~~~~~~~l~~l~~~G~ir~iGvs~~~~~ 168 (249)
||++..... .++.+++.+++++++||++||+||||+|++|+|+.... ..++|++|++++++|+||+||+||++++
T Consensus 78 tK~~~~~~~----~~~~~~~~~~~~l~~sL~~L~~~~iDl~~lh~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~ 153 (285)
T cd06660 78 TKVGPRPGD----GRDLSPEHIRRAVEESLKRLGTDYIDLYLLHWPDPDTPDIEETLRALEELVKEGKIRAIGVSNFSAE 153 (285)
T ss_pred eeecCCCCC----CCCCCHHHHHHHHHHHHHHhCCCceeEEEecCCCCCCCCHHHHHHHHHHHHHcCCccEEEeeCCCHH
Confidence 999865321 13468999999999999999999999999999988766 8999999999999999999999999999
Q ss_pred HHHHHhhc--CCceEEeeecCccccchhhhHHHHHHHhCCcEEecccCcccccCCCCCCCCC-C-----------CCccc
Q 025707 169 TIRRAHAV--HPITAVQLEWSLWARDIENEIVPLCRELGIGIVPYCPLGRGFFGGKAVVESV-P-----------LDSFL 234 (249)
Q Consensus 169 ~l~~~~~~--~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~spl~~G~l~g~~~~~~~-~-----------~~~~~ 234 (249)
.++++... .+++++|++||++++....+++++|+++||+|++|+||++|.++++...... + .....
T Consensus 154 ~l~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~~~~~l~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (285)
T cd06660 154 QLEEALAAAGVPPAVNQVEYNLLDRQAEEELLPYCREHGIGVIAYSPLAGGLLTGKYLPGAPPPEGDLLEALKEIAEKHG 233 (285)
T ss_pred HHHHHHHhhCCCceEEecccCcccCchHHHHHHHHHHcCcEEEEeccccCceecCCCCCCCCCChhhHHHHHHHHHHHhC
Confidence 99999888 8999999999999997655799999999999999999999999988443211 1 11234
Q ss_pred ccCCCcceeeeeec
Q 025707 235 VCFSSISVSFCFIT 248 (249)
Q Consensus 235 ~~~~~~~~~~~~~~ 248 (249)
.+.++++++|++..
T Consensus 234 ~s~~q~al~~~l~~ 247 (285)
T cd06660 234 VTPAQVALRWLLQQ 247 (285)
T ss_pred CCHHHHHHHHHhcC
Confidence 56678889988764
No 7
>TIGR01293 Kv_beta voltage-dependent potassium channel beta subunit, animal. Plant beta subunits and their closely related bacterial homologs (in Deinococcus radiudurans, Xylella fastidiosa, etc.) appear more closely related to each other than to animal forms. However, the bacterial species lack convincing counterparts the Kv alpha subunit and the Kv beta homolog may serve as an enzyme. Cutoffs are set for this model such that yeast and plant forms and bacterial close homologs score between trusted and noise cutoffs.
Probab=100.00 E-value=3.4e-48 Score=338.85 Aligned_cols=210 Identities=30% Similarity=0.465 Sum_probs=183.9
Q ss_pred ceecCCCCcccCcceeecccccCCCCCCCCHHHHHHHHHHHHHcCCCeEeCCCCcCCCchHHHHHHHHHc--CCCCCeEE
Q 025707 11 RVKLGTQGLEVSKLGYGCMSLSGCYNSPLSEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKE--LPRENIQV 88 (249)
Q Consensus 11 ~~~lg~~g~~vs~lg~Gt~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~g~se~~lg~~l~~--~~r~~~~I 88 (249)
||+||++|++||+||||||++. +...+.+++.++|+.|+++|||+||||+.||.|.||+.+|++|+. .+|++++|
T Consensus 1 ~r~lg~tg~~vs~lglGt~~~~---g~~~~~~~a~~~l~~al~~Gi~~~DTA~~Yg~g~sE~~lG~~l~~~~~~R~~~~i 77 (317)
T TIGR01293 1 YRNLGKSGLRVSCLGLGTWVTF---GGQISDEMAEQLLTLAYENGINLFDTAEVYAAGKAEVVLGNILKKKGWRRSSYVI 77 (317)
T ss_pred CcccCCCCCeecceeecCCccC---CCCCCHHHHHHHHHHHHHcCCCeEECccccCCCccHHHHHHHHHhcCCCcccEEE
Confidence 5889999999999999999742 224578999999999999999999999999999999999999985 36999999
Q ss_pred EecccccccCCcccccCCCHHHHHHHHHHHHHHcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCCHH
Q 025707 89 ATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPD 168 (249)
Q Consensus 89 ~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~ 168 (249)
+||++..... ....+.+++.+++++++||+|||+||||+|++|+|+...+++++|++|++|+++|+||+||+||++.+
T Consensus 78 aTK~~~~~~~--~~~~~~~~~~i~~~~~~SL~rL~td~iDl~~lH~~~~~~~~~e~~~aL~~l~~~G~ir~iGvSn~~~~ 155 (317)
T TIGR01293 78 TTKIFWGGKA--ETERGLSRKHIIEGLKASLERLQLEYVDIVFANRPDPNTPMEETVRAMTYVINQGMAMYWGTSRWSSM 155 (317)
T ss_pred EeeeccCCCC--CCCCCCCHHHHHHHHHHHHHHhCCCcEeEEEeccCCCCCCHHHHHHHHHHHHHcCCeeEEEecCCCHH
Confidence 9998642110 01134679999999999999999999999999999988889999999999999999999999999999
Q ss_pred HHHHHhhc------CCceEEeeecCccccch-hhhHHHHHHHhCCcEEecccCcccccCCCCCC
Q 025707 169 TIRRAHAV------HPITAVQLEWSLWARDI-ENEIVPLCRELGIGIVPYCPLGRGFFGGKAVV 225 (249)
Q Consensus 169 ~l~~~~~~------~~~~~~q~~~n~~~~~~-~~~~~~~~~~~gi~v~a~spl~~G~l~g~~~~ 225 (249)
+++++... .+++++|++||++++.. +..++++|+++||++++|+||++|+|++++..
T Consensus 156 ~l~~~~~~~~~~~~~~~~~~Q~~~~l~~r~~~e~~l~~~~~~~gi~v~a~spl~~G~Ltg~~~~ 219 (317)
T TIGR01293 156 EIMEAYSVARQFNLIPPICEQAEYHMFQREKVEVQLPELYHKIGVGAMTWSPLACGLVSGKYDS 219 (317)
T ss_pred HHHHHHHHHHHcCCCCcceeccccChHhcchhHHHHHHHHHHcCCeEEEeccccccccCCCCCC
Confidence 98776533 46789999999999864 56899999999999999999999999998643
No 8
>PLN02587 L-galactose dehydrogenase
Probab=100.00 E-value=4.9e-48 Score=337.45 Aligned_cols=230 Identities=30% Similarity=0.495 Sum_probs=190.0
Q ss_pred ceecCCCCcccCcceeecccccCCCCCCCCHHHHHHHHHHHHHcCCCeEeCCCCcCCCchHHHHHHHHHc--CCCCCeEE
Q 025707 11 RVKLGTQGLEVSKLGYGCMSLSGCYNSPLSEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKE--LPRENIQV 88 (249)
Q Consensus 11 ~~~lg~~g~~vs~lg~Gt~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~g~se~~lg~~l~~--~~r~~~~I 88 (249)
||+||++|++||.||||||++|+.|+. .+.+++.+++++|++.|||+||||+.||.|.+|+.+|++|+. .+|++++|
T Consensus 1 ~r~lg~t~~~vs~lglG~~~~g~~~~~-~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~sE~~lG~al~~~~~~R~~v~I 79 (314)
T PLN02587 1 LRELGSTGLKVSSVGFGASPLGSVFGP-VSEEDAIASVREAFRLGINFFDTSPYYGGTLSEKVLGKALKALGIPREKYVV 79 (314)
T ss_pred CCcCCCCCCcccCcccccccccCCCCC-CCHHHHHHHHHHHHHcCCCEEECcCccCCCchHHHHHHHHHhCCCCcceEEE
Confidence 689999999999999999999876654 478999999999999999999999999999999999999987 46999999
Q ss_pred EecccccccCCcccccCCCHHHHHHHHHHHHHHcCCCceeEEEeecCCCC---CCHHHHHHHHHHHHHcCCeeEEEcCCC
Q 025707 89 ATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTS---VPIEETIGEMKKLVEEGKIKYIGLSEA 165 (249)
Q Consensus 89 ~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~---~~~~~~~~~l~~l~~~G~ir~iGvs~~ 165 (249)
+||++.... ..+.+++.+++++++||++||+||||+|++|+|+.. ..++++|++|++|+++|+||+||+|||
T Consensus 80 ~TK~~~~~~-----~~~~~~~~i~~~~e~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvSn~ 154 (314)
T PLN02587 80 STKCGRYGE-----GFDFSAERVTKSVDESLARLQLDYVDILHCHDIEFGSLDQIVNETIPALQKLKESGKVRFIGITGL 154 (314)
T ss_pred EeccccCCC-----CCCCCHHHHHHHHHHHHHHhCCCCeeEEEecCCCCcchhhhHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 999974321 124679999999999999999999999999999642 346789999999999999999999999
Q ss_pred CHHHHHHHhhc---C--CceEEeeecCccccchhhhHHHHHHHhCCcEEecccCcccccCCCCCCCCCCC----------
Q 025707 166 SPDTIRRAHAV---H--PITAVQLEWSLWARDIENEIVPLCRELGIGIVPYCPLGRGFFGGKAVVESVPL---------- 230 (249)
Q Consensus 166 ~~~~l~~~~~~---~--~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~spl~~G~l~g~~~~~~~~~---------- 230 (249)
++++++.+... . .+..+|+.||+.++.. .+++++|+++||++++|+||++|+|+++......+.
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~ll~~~~~~gi~v~a~spl~~G~L~~~~~~~~~~~~~~~~~~~~~ 233 (314)
T PLN02587 155 PLAIFTYVLDRVPPGTVDVILSYCHYSLNDSSL-EDLLPYLKSKGVGVISASPLAMGLLTENGPPEWHPAPPELKSACAA 233 (314)
T ss_pred CHHHHHHHHHhhhcCCCCeEEeccccCcchhhH-HHHHHHHHHcCceEEEechhhccccCCCCCCCCCCCCHHHHHHHHH
Confidence 99888776543 2 2334578888877643 689999999999999999999999998742111010
Q ss_pred -----CcccccCCCcceeeeee
Q 025707 231 -----DSFLVCFSSISVSFCFI 247 (249)
Q Consensus 231 -----~~~~~~~~~~~~~~~~~ 247 (249)
..+..+.++++++|++.
T Consensus 234 l~~~a~~~~~s~aq~al~~~l~ 255 (314)
T PLN02587 234 AATHCKEKGKNISKLALQYSLS 255 (314)
T ss_pred HHHHHHHhCCCHHHHHHHHHHh
Confidence 02234556788888764
No 9
>PRK10376 putative oxidoreductase; Provisional
Probab=100.00 E-value=3.9e-46 Score=321.97 Aligned_cols=228 Identities=25% Similarity=0.422 Sum_probs=186.7
Q ss_pred CCcccCcceeecccccC--CCCCCCCHHHHHHHHHHHHHcCCCeEeCCCCcCCCchHHHHHHHHHcCCCCCeEEEecccc
Q 025707 17 QGLEVSKLGYGCMSLSG--CYNSPLSEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELPRENIQVATKFGF 94 (249)
Q Consensus 17 ~g~~vs~lg~Gt~~~~~--~~~~~~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~g~se~~lg~~l~~~~r~~~~I~tK~~~ 94 (249)
+|++||+||||||++|+ .|+...+++++.++++.|++.|||+||||+.||++.+|+.+|++++. .|++++|+||++.
T Consensus 13 ~g~~vs~iglG~~~lg~~~~~g~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~~~sE~~lg~~l~~-~R~~~~i~TK~g~ 91 (290)
T PRK10376 13 GGRSVNRLGYGAMQLAGPGVFGPPKDRDAAIAVLREAVALGVNHIDTSDFYGPHVTNQLIREALHP-YPDDLTIVTKVGA 91 (290)
T ss_pred CCeeecccceeccccCCCCcCCCCCCHHHHHHHHHHHHHcCCCeEEChhhcCCCcHHHHHHHHHhc-CCCeEEEEeeecc
Confidence 39999999999999986 46666678999999999999999999999999999999999999973 5999999999875
Q ss_pred cccCCcccccCCCHHHHHHHHHHHHHHcCCCceeEEEeecCCC-----CCCHHHHHHHHHHHHHcCCeeEEEcCCCCHHH
Q 025707 95 VELGFTSVIVKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDT-----SVPIEETIGEMKKLVEEGKIKYIGLSEASPDT 169 (249)
Q Consensus 95 ~~~~~~~~~~~~s~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~-----~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~ 169 (249)
............+++.+++++++||+|||+||||+|++|+++. ..+++++|++|++|+++|+||+||+|||++++
T Consensus 92 ~~~~~~~~~~~~~~~~i~~~~e~SL~rL~td~iDl~~~H~~~~~h~p~~~~~~~~~~~l~~l~~~Gkir~iGvSn~~~~~ 171 (290)
T PRK10376 92 RRGEDGSWLPAFSPAELRRAVHDNLRNLGLDVLDVVNLRLMGDGHGPAEGSIEEPLTVLAELQRQGLVRHIGLSNVTPTQ 171 (290)
T ss_pred cCCCCCccCCCCCHHHHHHHHHHHHHHhCCCeEEEEEEeccCCCCCCCCCCHHHHHHHHHHHHHCCceeEEEecCCCHHH
Confidence 3211111123567999999999999999999999999987421 24578999999999999999999999999999
Q ss_pred HHHHhhcCCceEEeeecCccccchhhhHHHHHHHhCCcEEecccCcccccCCCCCCCCCCCCcccccCCCcceeeeee
Q 025707 170 IRRAHAVHPITAVQLEWSLWARDIENEIVPLCRELGIGIVPYCPLGRGFFGGKAVVESVPLDSFLVCFSSISVSFCFI 247 (249)
Q Consensus 170 l~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~spl~~G~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (249)
++++....+++++|++||++++. ..+++++|+++||++++|+||+++..........+++ .+..+.++++++|++.
T Consensus 172 l~~~~~~~~~~~~q~~~~~~~~~-~~~~~~~~~~~gi~v~a~~pL~g~~~~~~~~l~~ia~-~~~~t~aq~al~w~l~ 247 (290)
T PRK10376 172 VAEARKIAEIVCVQNHYNLAHRA-DDALIDALARDGIAYVPFFPLGGFTPLQSSTLSDVAA-SLGATPMQVALAWLLQ 247 (290)
T ss_pred HHHHHhhCCeEEEecccCCCcCC-hHHHHHHHHHcCCEEEEeecCCCCChhhhHHHHHHHH-HhCCCHHHHHHHHHHh
Confidence 99998888999999999999876 3679999999999999999998542111111112222 3344667888888875
No 10
>PF00248 Aldo_ket_red: Aldo/keto reductase family; InterPro: IPR023210 The aldo-keto reductase family includes a number of related monomeric NADPH-dependent oxidoreductases, such as aldehyde reductase, aldose reductase, prostaglandin F synthase, xylose reductase, rho crystallin, and many others []. All possess a similar structure, with a beta-alpha-beta fold characteristic of nucleotide binding proteins []. The fold comprises a parallel beta-8/alpha-8-barrel, which contains a novel NADP-binding motif. The binding site is located in a large, deep, elliptical pocket in the C-terminal end of the beta sheet, the substrate being bound in an extended conformation. The hydrophobic nature of the pocket favours aromatic and apolar substrates over highly polar ones []. Binding of the NADPH coenzyme causes a massive conformational change, reorienting a loop, effectively locking the coenzyme in place. This binding is more similar to FAD- than to NAD(P)-binding oxidoreductases []. Some proteins of this entry contain a K+ ion channel beta chain regulatory domain; these are reported to have oxidoreductase activity []. This entry represents the NADP-dependent oxidoreductase domain found in these proteins.; PDB: 1C9W_A 4F40_B 1VBJ_A 1XGD_A 1X97_A 2ACS_A 1EF3_A 2ACU_A 1PWM_A 2NVD_A ....
Probab=100.00 E-value=5.8e-46 Score=319.66 Aligned_cols=196 Identities=38% Similarity=0.624 Sum_probs=171.5
Q ss_pred cceeecccccCCCCCCCCHHHHHHHHHHHHHcCCCeEeCCCCcCCCchHHHHHHHHHc--CCCCCeEEEecccccccCCc
Q 025707 23 KLGYGCMSLSGCYNSPLSEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKE--LPRENIQVATKFGFVELGFT 100 (249)
Q Consensus 23 ~lg~Gt~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~g~se~~lg~~l~~--~~r~~~~I~tK~~~~~~~~~ 100 (249)
+||||||++++. ..+.+++.++++.|++.|||+||||+.||+|.+|+.+|++|+. .+|++++|+||+... .
T Consensus 1 ~l~lG~~~~~~~---~~~~~~~~~~l~~a~~~Gin~~DtA~~Y~~g~sE~~lg~~l~~~~~~r~~~~i~tK~~~~----~ 73 (283)
T PF00248_consen 1 PLGLGTWRLGGE---RVSEEEAEAILRRALEAGINFFDTADSYGNGRSERILGRALRKSRVPRDDIFISTKVYGD----G 73 (283)
T ss_dssp SBEEECTTBTTT---TSTHHHHHHHHHHHHHTT--EEEECGGGGGGTHHHHHHHHHHHTSSTGGGSEEEEEEESS----S
T ss_pred CEEEEccccCCC---CCCHHHHHHHHHHHHHcCCCeecccccccccccccccccccccccccccccccccccccc----c
Confidence 589999998763 5689999999999999999999999999888999999999998 789999999999211 1
Q ss_pred ccccCCCHHHHHHHHHHHHHHcCCCceeEEEeecCCCCCC-HHHHHHHHHHHHHcCCeeEEEcCCCCHHHHHHH--hhcC
Q 025707 101 SVIVKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVP-IEETIGEMKKLVEEGKIKYIGLSEASPDTIRRA--HAVH 177 (249)
Q Consensus 101 ~~~~~~s~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~-~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~--~~~~ 177 (249)
......+++.+++++++||++||+||||+|++|+|+.... ..++|++|++|+++|+||+||+|||+++.++++ ....
T Consensus 74 ~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~ 153 (283)
T PF00248_consen 74 KPEPDYSPDSIRESLERSLERLGTDYIDLLLLHWPDPSEDALEEVWEALEELKKEGKIRHIGVSNFSPEQLEAALKIGSI 153 (283)
T ss_dssp STGGGSSHHHHHHHHHHHHHHHTSSSEEEEEESSSSTTSSHHHHHHHHHHHHHHTTSEEEEEEES--HHHHHHHHTCTSS
T ss_pred cccccccccccccccccccccccccchhccccccccccccccchhhhhhhhccccccccccccccccccccccccccccc
Confidence 2234678999999999999999999999999999999988 999999999999999999999999999999999 4557
Q ss_pred CceEEeeecCccccchhhhHHHHHHHhCCcEEecccCcccccCCCCCC
Q 025707 178 PITAVQLEWSLWARDIENEIVPLCRELGIGIVPYCPLGRGFFGGKAVV 225 (249)
Q Consensus 178 ~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~spl~~G~l~g~~~~ 225 (249)
+++++|++||++++....+++++|+++||++++++||++|+|+++...
T Consensus 154 ~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~~~l~~G~l~~~~~~ 201 (283)
T PF00248_consen 154 PPDVVQINYNLLNRREEEGLLEFCREHGIGVIAYSPLAGGLLTGKYKS 201 (283)
T ss_dssp -ESEEEEE-BTTBHBGGHHHHHHHHHTT-EEEEESTTGGGCGGTTTTT
T ss_pred cccccccccccccccccccccccccccccccccccccccCcccccccc
Confidence 899999999999766679999999999999999999999999998543
No 11
>KOG1577 consensus Aldo/keto reductase family proteins [General function prediction only]
Probab=100.00 E-value=3.4e-46 Score=314.74 Aligned_cols=212 Identities=28% Similarity=0.438 Sum_probs=186.2
Q ss_pred ceecCCCCcccCcceeecccccCCCCCCCCHHHHHHHHHHHHHcCCCeEeCCCCcCCCchHHHHHHHHHc------CCCC
Q 025707 11 RVKLGTQGLEVSKLGYGCMSLSGCYNSPLSEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKE------LPRE 84 (249)
Q Consensus 11 ~~~lg~~g~~vs~lg~Gt~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~g~se~~lg~~l~~------~~r~ 84 (249)
..+| ++|.+||.||||||+ .+..+...+++.|++.||||||||..|+ +|+.+|++|++ .+|+
T Consensus 6 ~~~L-n~G~~mP~iGlGTw~--------~~~~~~~~aV~~Al~~GYRHIDtA~~Y~---NE~evG~aik~~i~~~~v~Re 73 (300)
T KOG1577|consen 6 TVKL-NNGFKMPIIGLGTWQ--------SPPGQVAEAVKAAIKAGYRHIDTAHVYG---NEKEVGEAIKELLAEGGVKRE 73 (300)
T ss_pred eEec-cCCCccceeeeEecc--------cChhhHHHHHHHHHHhCcceeechhhhC---ChHHHHHHHHHHhhhCCcchh
Confidence 6778 889999999999997 2578899999999999999999999998 99999999996 6899
Q ss_pred CeEEEecccccccCCcccccCCCHHHHHHHHHHHHHHcCCCceeEEEeecCCCC----------------CCHHHHHHHH
Q 025707 85 NIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTS----------------VPIEETIGEM 148 (249)
Q Consensus 85 ~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~----------------~~~~~~~~~l 148 (249)
++||+||+|... +.++.++.++++||++||+||+|+|++|||-.. .+..++|++|
T Consensus 74 diFiTSKlw~~~---------~~~~~v~~al~~sLk~L~ldYvDLyLiH~P~~~k~~~~~~~~~~~~~~~~~~~~tW~am 144 (300)
T KOG1577|consen 74 DIFITSKLWPTD---------HAPELVEKALEKSLKKLQLDYVDLYLIHWPVAFKDSFPKDENGKVNYDDVDRIETWKAM 144 (300)
T ss_pred hheeeeccCccc---------cChhhHHHHHHHHHHHhChhhhheeeEecccccCCCCCcccccccccccchHHHHHHHH
Confidence 999999999754 568999999999999999999999999999653 3467899999
Q ss_pred HHHHHcCCeeEEEcCCCCHHHHHHHhhc--CCceEEeeecCccccchhhhHHHHHHHhCCcEEecccCccccc----CCC
Q 025707 149 KKLVEEGKIKYIGLSEASPDTIRRAHAV--HPITAVQLEWSLWARDIENEIVPLCRELGIGIVPYCPLGRGFF----GGK 222 (249)
Q Consensus 149 ~~l~~~G~ir~iGvs~~~~~~l~~~~~~--~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~spl~~G~l----~g~ 222 (249)
++++++|++|+||||||+..+++++++. .++.++|++|+++.+. .++++||+++||.|.|||||+.+-- ...
T Consensus 145 E~~~~~Gl~rsIGVSNF~~~~le~ll~~~ki~P~vnQvE~HP~~~Q--~~L~~fCk~~~I~v~AYSpLg~~~~~~~ll~~ 222 (300)
T KOG1577|consen 145 EKLVDEGLVRSIGVSNFNIKQLEELLNLAKIKPAVNQVECHPYLQQ--KKLVEFCKSKGIVVTAYSPLGSPGRGSDLLED 222 (300)
T ss_pred HHHHHcCCceEeeeecCCHHHHHHHHhcCCCCCccceeeccCCcCh--HHHHHHHhhCCcEEEEecCCCCCCCccccccC
Confidence 9999999999999999999999999887 6789999999998774 7799999999999999999998654 122
Q ss_pred CCCCCCCCCcccccCCCcceeeee
Q 025707 223 AVVESVPLDSFLVCFSSISVSFCF 246 (249)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~ 246 (249)
+....+++ ++..+.+++.+||+.
T Consensus 223 ~~l~~iA~-K~~kt~aQIlLrw~~ 245 (300)
T KOG1577|consen 223 PVLKEIAK-KYNKTPAQILLRWAL 245 (300)
T ss_pred HHHHHHHH-HhCCCHHHHHHHHHH
Confidence 22233444 678888899999975
No 12
>PRK11172 dkgB 2,5-diketo-D-gluconate reductase B; Provisional
Probab=100.00 E-value=5e-45 Score=311.59 Aligned_cols=206 Identities=23% Similarity=0.390 Sum_probs=175.2
Q ss_pred cccCcceeecccccCCCCCCCCHHHHHHHHHHHHHcCCCeEeCCCCcCCCchHHHHHHHHHc--CCCCCeEEEecccccc
Q 025707 19 LEVSKLGYGCMSLSGCYNSPLSEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKE--LPRENIQVATKFGFVE 96 (249)
Q Consensus 19 ~~vs~lg~Gt~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~g~se~~lg~~l~~--~~r~~~~I~tK~~~~~ 96 (249)
++||.||||||+++ .+++.++++.|++.|||+||||+.|| +|+.+|++|+. .+|++++|+||++..
T Consensus 1 ~~vs~lglGt~~~~--------~~~~~~~i~~A~~~Gi~~~DTA~~Yg---~E~~lG~al~~~~~~R~~v~i~TK~~~~- 68 (267)
T PRK11172 1 MSIPAFGLGTFRLK--------DQVVIDSVKTALELGYRAIDTAQIYD---NEAAVGQAIAESGVPRDELFITTKIWID- 68 (267)
T ss_pred CCCCCEeeEccccC--------hHHHHHHHHHHHHcCCCEEEccchhC---CHHHHHHHHHHcCCChhHeEEEEEeCCC-
Confidence 36899999999753 46799999999999999999999999 79999999985 479999999998532
Q ss_pred cCCcccccCCCHHHHHHHHHHHHHHcCCCceeEEEeecCCCC--CCHHHHHHHHHHHHHcCCeeEEEcCCCCHHHHHHHh
Q 025707 97 LGFTSVIVKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTS--VPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAH 174 (249)
Q Consensus 97 ~~~~~~~~~~s~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~--~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~ 174 (249)
..+++.+++++++||+|||+||||+|++|+|+.. .+.+++|++|++|+++|+||+||+|||+.++++++.
T Consensus 69 --------~~~~~~~~~~~~~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvSn~~~~~l~~~~ 140 (267)
T PRK11172 69 --------NLAKDKLIPSLKESLQKLRTDYVDLTLIHWPSPNDEVSVEEFMQALLEAKKQGLTREIGISNFTIALMKQAI 140 (267)
T ss_pred --------CCCHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEccCCHHHHHHHH
Confidence 2568999999999999999999999999999663 567899999999999999999999999999999887
Q ss_pred hc---CCceEEeeecCccccchhhhHHHHHHHhCCcEEecccCcccccCCCCCCCCCCCCcccccCCCcceeeeee
Q 025707 175 AV---HPITAVQLEWSLWARDIENEIVPLCRELGIGIVPYCPLGRGFFGGKAVVESVPLDSFLVCFSSISVSFCFI 247 (249)
Q Consensus 175 ~~---~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~spl~~G~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (249)
+. .+++++|++||++++. .+++++|+++||+|++|+||++|.+........+++ .+..+.++++++|++.
T Consensus 141 ~~~~~~~~~~~Q~~~~~~~~~--~~ll~~~~~~gi~v~a~spl~~G~~~~~~~l~~~a~-~~~~s~aqval~w~l~ 213 (267)
T PRK11172 141 AAVGAENIATNQIELSPYLQN--RKVVAFAKEHGIHVTSYMTLAYGKVLKDPVIARIAA-KHNATPAQVILAWAMQ 213 (267)
T ss_pred HhcCCCCCeEEeeecCCCCCc--HHHHHHHHHCCCEEEEECCCCCCcccCCHHHHHHHH-HhCCCHHHHHHHHHHh
Confidence 65 3689999999999874 689999999999999999999997754422222222 3445666888888763
No 13
>PRK14863 bifunctional regulator KidO; Provisional
Probab=100.00 E-value=1.4e-44 Score=312.19 Aligned_cols=191 Identities=20% Similarity=0.233 Sum_probs=168.2
Q ss_pred CcccCcceeecccccCC-------CCCCCCHHHHHHHHHHHHHcCCCeEeCCCCcCCCchHHHHHHHHHcCCCCCeEEEe
Q 025707 18 GLEVSKLGYGCMSLSGC-------YNSPLSEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELPRENIQVAT 90 (249)
Q Consensus 18 g~~vs~lg~Gt~~~~~~-------~~~~~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~g~se~~lg~~l~~~~r~~~~I~t 90 (249)
+++||+||||||++|+. |+ .++++++.++|+.|++.|||+||||+.|| .||+.+|++|+...+++++|+|
T Consensus 2 ~~~vs~iglGt~~~g~~~~~~~~~~~-~~~~~ea~~~l~~A~~~Gin~~DTA~~YG--~SE~~lG~al~~~~~~~~~i~t 78 (292)
T PRK14863 2 SSPVSKLGLAAAQFGLDPGSSSAPRG-RTPEAEARDILNIAARAGLSVLDASGLFG--RAETVLGQLIPRPVPFRVTLST 78 (292)
T ss_pred CCcceeeeeeeeccCCCcccccCCCC-CCCHHHHHHHHHHHHHcCCCEEecchhhh--hHHHHHhhhhccCCceEeeccc
Confidence 57899999999999864 34 35899999999999999999999999998 7999999999742346788888
Q ss_pred cccccccCCcccccCCCHHHHHHHHHHHHHHcCCCceeEEEeecCCCC-CCH-HHHHHHHHHHHHcCCeeEEEcCCCCHH
Q 025707 91 KFGFVELGFTSVIVKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTS-VPI-EETIGEMKKLVEEGKIKYIGLSEASPD 168 (249)
Q Consensus 91 K~~~~~~~~~~~~~~~s~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~-~~~-~~~~~~l~~l~~~G~ir~iGvs~~~~~ 168 (249)
|.. +.+++.+++++++||+|||+||||+|++|+|+.. .+. +++|++|++|+++|+||+||+||++++
T Consensus 79 k~~-----------~~~~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvSn~~~~ 147 (292)
T PRK14863 79 VRA-----------DRGPDFVEAEARASLRRMGVERADAILVHSPTELFGPHGAALWERLQALKDQGLFAKIGVSAHASD 147 (292)
T ss_pred ccc-----------cccHHHHHHHHHHHHHHhCCCccCeEEEeCchhhcCcchHHHHHHHHHHHHcCCcceEeeeccCHH
Confidence 842 2358999999999999999999999999999763 233 578999999999999999999999999
Q ss_pred HHHHHhhcCCceEEeeecCccccchh-hhHHHHHHHhCCcEEecccCcccccCCC
Q 025707 169 TIRRAHAVHPITAVQLEWSLWARDIE-NEIVPLCRELGIGIVPYCPLGRGFFGGK 222 (249)
Q Consensus 169 ~l~~~~~~~~~~~~q~~~n~~~~~~~-~~~~~~~~~~gi~v~a~spl~~G~l~g~ 222 (249)
++..+....+++++|++||++++..+ .+++++|+++||++++|+||++|+|+++
T Consensus 148 ~~~~~~~~~~~~~~Q~~~n~l~~~~~~~~~l~~~~~~gi~v~a~spl~~G~L~~~ 202 (292)
T PRK14863 148 DPVGVARRFKPDILQAPASLLDQRLLADGSLQRIAGMGVEVHLRSIFLNGLLFLP 202 (292)
T ss_pred HHHHHHhcCCCCEEEecCCcccccccccchHHHHHhCCCEEEEechhhCccccCC
Confidence 98888777889999999999998653 5699999999999999999999999865
No 14
>COG4989 Predicted oxidoreductase [General function prediction only]
Probab=100.00 E-value=3.2e-44 Score=291.61 Aligned_cols=237 Identities=27% Similarity=0.398 Sum_probs=200.9
Q ss_pred CCceecCCCCcccCcceeecccccCCCCCCCCHHHHHHHHHHHHHcCCCeEeCCCCcCCCchHHHHHHHHHc--CCCCCe
Q 025707 9 VPRVKLGTQGLEVSKLGYGCMSLSGCYNSPLSEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKE--LPRENI 86 (249)
Q Consensus 9 m~~~~lg~~g~~vs~lg~Gt~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~g~se~~lg~~l~~--~~r~~~ 86 (249)
|+++.+++.|+++|++.+|+|++.. |+. +..+....++.|++.||++||-|..||.|..|+.+|.+|+- ..|+++
T Consensus 1 m~rI~l~~~~~e~Sriv~G~wRl~d-~~~--~~~e~~~~Ie~~le~Gitt~DhADIYGgy~cE~~fg~aL~l~p~lReki 77 (298)
T COG4989 1 MQRITLAPDGLEFSRIVLGYWRLND-WNM--SARELLSFIETALELGITTFDHADIYGGYQCEALFGEALKLAPGLREKI 77 (298)
T ss_pred CceEEecCCCccHHHHHHHHHhhhh-ccC--CHHHHHHHHHHHHHcCcccchhhhhcCCccHHHHHHHHHhcChhhhhhe
Confidence 6789999999999999999999987 653 56899999999999999999999999999999999999987 469999
Q ss_pred EEEecccccccCC---cccccCCCHHHHHHHHHHHHHHcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCCeeEEEcC
Q 025707 87 QVATKFGFVELGF---TSVIVKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLS 163 (249)
Q Consensus 87 ~I~tK~~~~~~~~---~~~~~~~s~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs 163 (249)
.|.||++...... .....+.|.++|..++++||.+|++||+|++++|+||+..+.+++.+++..|+++||||++|||
T Consensus 78 eivsKCGI~~~s~~~~~~~hydts~~HI~~SVe~SL~~L~tDylD~LLiHRPDpLmd~eeVAeAf~~L~~sGKVr~fGVS 157 (298)
T COG4989 78 EIVSKCGIRLPSREEPRIGHYDTSKEHIIKSVEQSLINLKTDYLDLLLIHRPDPLMDAEEVAEAFTHLHKSGKVRHFGVS 157 (298)
T ss_pred EeeeccccccccccccccccccCcHHHHHHHHHHHHHHhccchhhhhhccCCcccCCHHHHHHHHHHHHhcCCeeeeecC
Confidence 9999999765432 1235678999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHhhc--CCceEEeeecCccccchh-hhHHHHHHHhCCcEEecccCcccccCCCCC--------CCCCCCCc
Q 025707 164 EASPDTIRRAHAV--HPITAVQLEWSLWARDIE-NEIVPLCRELGIGIVPYCPLGRGFFGGKAV--------VESVPLDS 232 (249)
Q Consensus 164 ~~~~~~l~~~~~~--~~~~~~q~~~n~~~~~~~-~~~~~~~~~~gi~v~a~spl~~G~l~g~~~--------~~~~~~~~ 232 (249)
|+++.+++.+... .++.++|++.|+++.... ++.+++|+++.|.+++||||++|-+....+ .+.+++..
T Consensus 158 Nf~p~Q~~LL~s~l~~~LvtNQlelS~~~~~~~~DGtLd~~q~~~v~pmaWSpl~gG~~F~g~~~~q~l~~~l~~ia~e~ 237 (298)
T COG4989 158 NFNPAQFELLQSRLPFTLVTNQLELSPLHTPMLLDGTLDYCQQLRVRPMAWSPLGGGGLFLGDDKFQRLRKVLDRIAEEY 237 (298)
T ss_pred CCCHHHHHHHHHhccchhhhcceeeccccccccccchHHHHHHcCCCcccccccCCCccccCCcchHHHHHHHHHHHHHh
Confidence 9999999887766 568899999999987543 889999999999999999999886554321 11222322
Q ss_pred ccccCCCcceeeeeec
Q 025707 233 FLVCFSSISVSFCFIT 248 (249)
Q Consensus 233 ~~~~~~~~~~~~~~~~ 248 (249)
...+...+.+.|.+||
T Consensus 238 ga~s~~~VaiAWllR~ 253 (298)
T COG4989 238 GAVSITAVAIAWLLRH 253 (298)
T ss_pred CcccHHHHHHHHHHhC
Confidence 2245555666666554
No 15
>KOG1576 consensus Predicted oxidoreductase [Energy production and conversion]
Probab=100.00 E-value=4.9e-42 Score=280.94 Aligned_cols=224 Identities=29% Similarity=0.496 Sum_probs=194.6
Q ss_pred cccccCCceecCCCCcccCcceeecccccCCCCCCCCHHHHHHHHHHHHHcCCCeEeCCCCcCCCchHHHHHHHHHcCCC
Q 025707 4 DKKLQVPRVKLGTQGLEVSKLGYGCMSLSGCYNSPLSEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELPR 83 (249)
Q Consensus 4 ~~~~~m~~~~lg~~g~~vs~lg~Gt~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~g~se~~lg~~l~~~~r 83 (249)
+++..|+||.+|++|+.||+++||+..+++.++.. ++++....+..|+..|||+|||+|.||.+++|+.+|.++++.||
T Consensus 17 ~~vrrmeyR~lg~tgl~VSk~~fGga~L~~~fgd~-~~e~~i~tv~eA~k~GINyiDTsp~Ygqs~se~~lg~al~~vPR 95 (342)
T KOG1576|consen 17 EKVRRMEYRQLGSTGLRVSKLGFGGAALGQLFGDE-DEEEGILTVIEAFKSGINYIDTSPYYGQSRSEEGLGLALKDVPR 95 (342)
T ss_pred HHHHHHHHhhcCCCcceeeeeeecchhhhhhcCCc-chhhhHHHHHHHHHccccceecCcccCcchhHHHHHHHHhhCCh
Confidence 57788999999999999999999999999988874 78888888888999999999999999999999999999999999
Q ss_pred CCeEEEecccccccCCcccccCCCHHHHHHHHHHHHHHcCCCceeEEEeecCCCC----CCHHHHHHHHHHHHHcCCeeE
Q 025707 84 ENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTS----VPIEETIGEMKKLVEEGKIKY 159 (249)
Q Consensus 84 ~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~----~~~~~~~~~l~~l~~~G~ir~ 159 (249)
+.++|+||++....+.+ ...+++++.+++++++||+||++||+|++++|..+-. ..+.|++.+|+++|++||||+
T Consensus 96 ~aYyIaTKvgRy~ld~~-~~FdfsadkvreSv~rSlerLqldyvDilqiHDvefap~ld~vl~Etlp~Le~lk~~Gk~Rf 174 (342)
T KOG1576|consen 96 EAYYIATKVGRYELDYA-NMFDFSADKVRESVKRSLERLQLDYVDILQIHDVEFAPNLDIVLNETLPALEELKQEGKIRF 174 (342)
T ss_pred hheeeeeeeeecccCcc-ccccchHHHHHHHHHHHHHHhCCceeEEEEeecccccccccHHHHHHHHHHHHHHhcCceeE
Confidence 99999999997664422 2357899999999999999999999999999987654 346799999999999999999
Q ss_pred EEcCCCCHHHHHHHhhcC--CceEEe--eecCccccchhhhHHHHHHHhCCcEEecccCcccccCCCCCCCCCCC
Q 025707 160 IGLSEASPDTIRRAHAVH--PITAVQ--LEWSLWARDIENEIVPLCRELGIGIVPYCPLGRGFFGGKAVVESVPL 230 (249)
Q Consensus 160 iGvs~~~~~~l~~~~~~~--~~~~~q--~~~n~~~~~~~~~~~~~~~~~gi~v~a~spl~~G~l~g~~~~~~~~~ 230 (249)
||++.++.+.+.++++.. .++++- ..|++.+.. .-..+++.+.+|++|+..++++.|+|+..-+++..|.
T Consensus 175 iGitgypldvl~~~ae~~~G~~dvvlsY~ry~l~d~t-Ll~~~~~~~sk~vgVi~AsalsmgLLt~~gp~~wHPa 248 (342)
T KOG1576|consen 175 IGITGYPLDVLTECAERGKGRLDVVLSYCRYTLNDNT-LLRYLKRLKSKGVGVINASALSMGLLTNQGPPPWHPA 248 (342)
T ss_pred eeecccchHHHHHHHhcCCCceeeehhhhhhccccHH-HHHHHHHHHhcCceEEehhhHHHHHhhcCCCCCCCCC
Confidence 999999999999998773 466665 456665543 2667888889999999999999999999965555554
No 16
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=100.00 E-value=2.1e-42 Score=295.12 Aligned_cols=230 Identities=26% Similarity=0.323 Sum_probs=198.7
Q ss_pred CCceecCCCCcccCcceeecccccCCCCCCCCHHHHHHHHHHHHHcCCCeEeCCCCcCCCchHHHHHHHHHcCCCCCeEE
Q 025707 9 VPRVKLGTQGLEVSKLGYGCMSLSGCYNSPLSEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELPRENIQV 88 (249)
Q Consensus 9 m~~~~lg~~g~~vs~lg~Gt~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~g~se~~lg~~l~~~~r~~~~I 88 (249)
|.||++|++|.++|.||||||++...|....+++.+.++|++|++.|||+||||..|..|.||..+|++|+...|+++.+
T Consensus 1 Mlyr~~~k~g~~~s~lgfG~MRlp~~~~~~id~~~~~~~i~~aie~GiNyidTA~~Yh~g~sE~~lgkaL~~~~Rekv~L 80 (391)
T COG1453 1 MLYRKFPKTGDELSILGFGCMRLPLKEQGSIDEENANETIDYAIEHGINYIDTAWPYHGGESEEFLGKALKDGYREKVKL 80 (391)
T ss_pred CchhhcCCCCcccceeccceeecccccCCCccHHHHHHHHHHHHHcCCceEeecccccCCCchHHHHHHhhhcccceEEE
Confidence 78999999999999999999999998888889999999999999999999999999966799999999999988999999
Q ss_pred EecccccccCCcccccCCCHHHHHHHHHHHHHHcCCCceeEEEeecCCCCCCHH-----HHHHHHHHHHHcCCeeEEEcC
Q 025707 89 ATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIE-----ETIGEMKKLVEEGKIKYIGLS 163 (249)
Q Consensus 89 ~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~-----~~~~~l~~l~~~G~ir~iGvs 163 (249)
+||+.... --+++.+++-++++|++|++||+|+|++|+.+. ..++ ..++.+++++++|+||++|+|
T Consensus 81 aTKlp~~~--------~~~~edm~r~fneqLekl~~Dy~D~yliH~l~~-e~~~k~~~~g~~df~~kak~eGkIr~~GFS 151 (391)
T COG1453 81 ATKLPSWP--------VKDREDMERIFNEQLEKLGTDYIDYYLIHGLNT-ETWEKIERLGVFDFLEKAKAEGKIRNAGFS 151 (391)
T ss_pred EeecCCcc--------ccCHHHHHHHHHHHHHHhCCchhhhhhhccccH-HHHHHHHccChHHHHHHHHhcCcEEEeeec
Confidence 99997433 236889999999999999999999999999987 3332 369999999999999999999
Q ss_pred CCCH-HHHHHHhhcCCceEEeeecCccccchh--hhHHHHHHHhCCcEEecccCcccccCCCCCCCCCCCCcccc-----
Q 025707 164 EASP-DTIRRAHAVHPITAVQLEWSLWARDIE--NEIVPLCRELGIGIVPYCPLGRGFFGGKAVVESVPLDSFLV----- 235 (249)
Q Consensus 164 ~~~~-~~l~~~~~~~~~~~~q~~~n~~~~~~~--~~~~~~~~~~gi~v~a~spl~~G~l~g~~~~~~~~~~~~~~----- 235 (249)
.|+. +.+.+++...+++++|++||.++.+.. .+.+++|.++|++|+.++|+.+|-|..+.+.. ..+-++.
T Consensus 152 fHgs~e~~~~iv~a~~~dfvqlq~ny~d~~n~~~~~~l~~A~~~~~gI~IMeP~~gG~l~~~vP~~--~~~l~~~~~~~~ 229 (391)
T COG1453 152 FHGSTEVFKEIVDAYPWDFVQLQYNYIDQKNQAGTEGLKYAASKGLGIFIMEPLDGGGLLYNVPEK--LEELCRPASPKR 229 (391)
T ss_pred CCCCHHHHHHHHhcCCcceEEeeeeeeccchhcccHHHHHHHhCCCcEEEEeeCCCCCcccCCCHH--HHHHHHhcCCCC
Confidence 9976 677888888899999999999997643 38999999999999999999999988863321 1112222
Q ss_pred cCCCcceeeeeecC
Q 025707 236 CFSSISVSFCFITQ 249 (249)
Q Consensus 236 ~~~~~~~~~~~~~~ 249 (249)
+.++++.||++.+.
T Consensus 230 sP~~wa~R~~~shp 243 (391)
T COG1453 230 SPAEWALRYLLSHP 243 (391)
T ss_pred CcHHHHHHHHhcCC
Confidence 23578888887663
No 17
>PRK11565 dkgA 2,5-diketo-D-gluconate reductase A; Provisional
Probab=100.00 E-value=4.1e-40 Score=282.29 Aligned_cols=210 Identities=27% Similarity=0.341 Sum_probs=175.1
Q ss_pred eecCCCCcccCcceeecccccCCCCCCCCHHHHHHHHHHHHHcCCCeEeCCCCcCCCchHHHHHHHHHc--CCCCCeEEE
Q 025707 12 VKLGTQGLEVSKLGYGCMSLSGCYNSPLSEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKE--LPRENIQVA 89 (249)
Q Consensus 12 ~~lg~~g~~vs~lg~Gt~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~g~se~~lg~~l~~--~~r~~~~I~ 89 (249)
..+ ++|+.||.||||||++ +.+++.+++++|++.|||+||||+.|| +|+.+|++|+. .+|++++|+
T Consensus 7 ~~l-~~g~~v~~lglG~~~~--------~~~~~~~~l~~A~~~Gi~~~DTA~~Yg---~E~~lG~al~~~~~~R~~~~i~ 74 (275)
T PRK11565 7 IKL-QDGNVMPQLGLGVWQA--------SNEEVITAIHKALEVGYRSIDTAAIYK---NEEGVGKALKEASVAREELFIT 74 (275)
T ss_pred EEc-CCCCccCCcceECccC--------CHHHHHHHHHHHHHhCCCEEEchhhhC---CHHHHHHHHHHcCCCHHHEEEE
Confidence 446 7899999999999974 468899999999999999999999998 79999999986 469999999
Q ss_pred ecccccccCCcccccCCCHHHHHHHHHHHHHHcCCCceeEEEeecCCCC-CCHHHHHHHHHHHHHcCCeeEEEcCCCCHH
Q 025707 90 TKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTS-VPIEETIGEMKKLVEEGKIKYIGLSEASPD 168 (249)
Q Consensus 90 tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~-~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~ 168 (249)
||++. .+++.+++++++||++||+||||+|++|+|+.. .+..++|++|++|+++|+||+||+||++++
T Consensus 75 tK~~~-----------~~~~~~~~~~~~sL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~ 143 (275)
T PRK11565 75 TKLWN-----------DDHKRPREALEESLKKLQLDYVDLYLMHWPVPAIDHYVEAWKGMIELQKEGLIKSIGVCNFQIH 143 (275)
T ss_pred EEecC-----------cchHHHHHHHHHHHHHhCCCceEEEEecCCCCCcCcHHHHHHHHHHHHHcCCeeEEeeccCCHH
Confidence 99862 246789999999999999999999999999765 347899999999999999999999999999
Q ss_pred HHHHHhhc--CCceEEeeecCccccchhhhHHHHHHHhCCcEEecccCccccc--CCCCCCCCCCCCcccccCCCcceee
Q 025707 169 TIRRAHAV--HPITAVQLEWSLWARDIENEIVPLCRELGIGIVPYCPLGRGFF--GGKAVVESVPLDSFLVCFSSISVSF 244 (249)
Q Consensus 169 ~l~~~~~~--~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~spl~~G~l--~g~~~~~~~~~~~~~~~~~~~~~~~ 244 (249)
+++++... .++.++|++||++.+. .+++++|+++||++++|+||++|.. ........++ ..+..+.++++++|
T Consensus 144 ~l~~~~~~~~v~~~~~Q~~~~~~~~~--~~~~~~~~~~~i~~~a~spl~~G~~~~~~~~~l~~ia-~~~g~s~aq~aL~w 220 (275)
T PRK11565 144 HLQRLIDETGVTPVINQIELHPLMQQ--RQLHAWNATHKIQTESWSPLAQGGKGVFDQKVIRDLA-DKYGKTPAQIVIRW 220 (275)
T ss_pred HHHHHHHhCCCCceeeeeecCCccch--HHHHHHHHHCCCEEEEEccCCCCCcccccCHHHHHHH-HHhCCCHHHHHHHH
Confidence 99988755 3468899999998874 6799999999999999999997731 0111111111 13445667888888
Q ss_pred eee
Q 025707 245 CFI 247 (249)
Q Consensus 245 ~~~ 247 (249)
++.
T Consensus 221 ~l~ 223 (275)
T PRK11565 221 HLD 223 (275)
T ss_pred HHc
Confidence 763
No 18
>KOG3023 consensus Glutamate-cysteine ligase regulatory subunit [Amino acid transport and metabolism]
Probab=98.88 E-value=7.3e-09 Score=84.65 Aligned_cols=107 Identities=12% Similarity=0.134 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHHcCCeeEEEcCCCCHHHHHHHhhc--CCceEEeeecCccccchhhhHHHHHHHhCCcEEecccCcccc
Q 025707 141 IEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAV--HPITAVQLEWSLWARDIENEIVPLCRELGIGIVPYCPLGRGF 218 (249)
Q Consensus 141 ~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~--~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~spl~~G~ 218 (249)
+.+.|..||+++.+|+|..+|+|.++..++++++.. ..+..+|++..-.+.- ..++.+||.+++|.+...+-=. -+
T Consensus 155 lkplwk~LE~lv~~~kI~~lGvSDfda~qLe~Li~saqVvP~snqVnL~~cCvv-PpdLqafa~~hdiQLltHsDP~-~l 232 (285)
T KOG3023|consen 155 LKPLWKLLEELVGEGKIGTLGVSDFDANQLERLISSAQVVPESNQVNLGQCCVV-PPDLQAFADRHDIQLLTHSDPS-AL 232 (285)
T ss_pred HHHHHHHHHHHhccCceeeeeecccCHHHHHHHHhhhccccccceeeccccccC-CHHHHHHhhhcceeeeecCCch-hc
Confidence 457899999999999999999999999999999988 4567788866555543 3789999999999977654211 13
Q ss_pred cCCCCCCCCCCCCcccccCCCcceeeeeecC
Q 025707 219 FGGKAVVESVPLDSFLVCFSSISVSFCFITQ 249 (249)
Q Consensus 219 l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (249)
|+.+.--+.+.........|.+.++|.+|||
T Consensus 233 lse~~f~e~~~~sqpdi~~p~~~~dWllRYs 263 (285)
T KOG3023|consen 233 LSESEFTEVIHKSQPDIPNPARTVDWLLRYS 263 (285)
T ss_pred CChhhhhhhhhccCcccCCCccceeeeEEEE
Confidence 3333111122245566778899999999986
No 19
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=95.60 E-value=0.7 Score=40.35 Aligned_cols=157 Identities=15% Similarity=0.115 Sum_probs=98.2
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCCCCcCCCchHHHHHHHHHcCCCCCeEEEecccccccCCcccccCCCHHHHHHHHHHHH
Q 025707 40 SEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASL 119 (249)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~g~se~~lg~~l~~~~r~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL 119 (249)
+.++..+.++.+.+.|++.|+.--. ++...+...=+++++.-. ++-|.-+... .++.+.. ..+-+.|
T Consensus 134 ~~~~~~~~~~~~~~~Gf~~iKik~g-~~~~~d~~~v~~lr~~~g-~~~l~vD~n~----------~~~~~~A-~~~~~~l 200 (316)
T cd03319 134 TPEAMAAAAKKAAKRGFPLLKIKLG-GDLEDDIERIRAIREAAP-DARLRVDANQ----------GWTPEEA-VELLREL 200 (316)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEeC-CChhhHHHHHHHHHHhCC-CCeEEEeCCC----------CcCHHHH-HHHHHHH
Confidence 5677888889999999999987531 111223333344444222 5556655532 2344433 2233444
Q ss_pred HHcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCCee-EEEcCCCCHHHHHHHhhcCCceEEeeecCcccc-chhhhH
Q 025707 120 RRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIK-YIGLSEASPDTIRRAHAVHPITAVQLEWSLWAR-DIENEI 197 (249)
Q Consensus 120 ~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~~ 197 (249)
+.+++ .++..|-.. .-++.+.+|++...|. ..|=+-++.+.+.++++....+++|+..+..-. ....++
T Consensus 201 ~~~~l-----~~iEeP~~~----~d~~~~~~L~~~~~ipIa~~E~~~~~~~~~~~~~~~~~d~v~~~~~~~GGi~~~~~~ 271 (316)
T cd03319 201 AELGV-----ELIEQPVPA----GDDDGLAYLRDKSPLPIMADESCFSAADAARLAGGGAYDGINIKLMKTGGLTEALRI 271 (316)
T ss_pred HhcCC-----CEEECCCCC----CCHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHhcCCCCEEEEeccccCCHHHHHHH
Confidence 55544 444444332 2356677788776666 335566888999999998889999998666432 122789
Q ss_pred HHHHHHhCCcEEecccCcccc
Q 025707 198 VPLCRELGIGIVPYCPLGRGF 218 (249)
Q Consensus 198 ~~~~~~~gi~v~a~spl~~G~ 218 (249)
..+|+++|+.++..+-+..++
T Consensus 272 ~~~a~~~gi~~~~~~~~~~~i 292 (316)
T cd03319 272 ADLARAAGLKVMVGCMVESSL 292 (316)
T ss_pred HHHHHHcCCCEEEECchhhHH
Confidence 999999999999876655443
No 20
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=92.94 E-value=4.8 Score=35.64 Aligned_cols=154 Identities=13% Similarity=0.095 Sum_probs=93.2
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCCCCcCC-----CchHHHHHHHHHcCCCCCeEEEecccccccCCcccccCCCHHHHHHH
Q 025707 40 SEEDGISIIKHAFSKGITFFDTADKYGP-----YTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSC 114 (249)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~-----g~se~~lg~~l~~~~r~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~ 114 (249)
+.++..+.++.+.+.|++.|-.--..+. -+-....-+++++.-.+++.|.-.... .++++...
T Consensus 139 ~~~~~~~~a~~~~~~Gf~~~Kik~g~~~~~~~~~~~d~~~v~~ir~~~g~~~~l~vDaN~----------~~~~~~a~-- 206 (357)
T cd03316 139 SPEELAEEAKRAVAEGFTAVKLKVGGPDSGGEDLREDLARVRAVREAVGPDVDLMVDANG----------RWDLAEAI-- 206 (357)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCCCcchHHHHHHHHHHHHHHHhhCCCCEEEEECCC----------CCCHHHHH--
Confidence 4677788888889999999876432221 011222333444322345555554421 23444433
Q ss_pred HHHHHHHcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCCee-EEEcCCCCHHHHHHHhhcCCceEEeeecCccccc-
Q 025707 115 CEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIK-YIGLSEASPDTIRRAHAVHPITAVQLEWSLWARD- 192 (249)
Q Consensus 115 ~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~~- 192 (249)
+.+++|. ..++.+++.|-... .++.+.++++.-.+. ..|=+.++++.+.++++...++++|+...-.-.-
T Consensus 207 --~~~~~l~--~~~i~~iEqP~~~~----~~~~~~~l~~~~~ipi~~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~GGi~ 278 (357)
T cd03316 207 --RLARALE--EYDLFWFEEPVPPD----DLEGLARLRQATSVPIAAGENLYTRWEFRDLLEAGAVDIIQPDVTKVGGIT 278 (357)
T ss_pred --HHHHHhC--ccCCCeEcCCCCcc----CHHHHHHHHHhCCCCEEeccccccHHHHHHHHHhCCCCEEecCccccCCHH
Confidence 2333332 22445566554322 456677787775555 4445667889999999888889999976654321
Q ss_pred hhhhHHHHHHHhCCcEEeccc
Q 025707 193 IENEIVPLCRELGIGIVPYCP 213 (249)
Q Consensus 193 ~~~~~~~~~~~~gi~v~a~sp 213 (249)
...++.+.|+++|+.++..+.
T Consensus 279 ~~~~i~~~a~~~g~~~~~~~~ 299 (357)
T cd03316 279 EAKKIAALAEAHGVRVAPHGA 299 (357)
T ss_pred HHHHHHHHHHHcCCeEeccCC
Confidence 127899999999999987764
No 21
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=91.36 E-value=8.1 Score=32.71 Aligned_cols=158 Identities=13% Similarity=0.139 Sum_probs=96.3
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCCCCcCCCchHHHHHHHHHcCCCCCeEEEecccccccCCcccccCCCHHHHHHHHHHHH
Q 025707 40 SEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASL 119 (249)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~g~se~~lg~~l~~~~r~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL 119 (249)
+.++..+.++.+.+.|++.|-.--.-. ...+...-+++++.-.+++.|.-.... .++.+...+-+ +.|
T Consensus 85 ~~~~~~~~~~~~~~~G~~~~KiKvg~~-~~~d~~~v~~vr~~~g~~~~l~vDan~----------~~~~~~a~~~~-~~l 152 (265)
T cd03315 85 EPAEVAEEARRALEAGFRTFKLKVGRD-PARDVAVVAALREAVGDDAELRVDANR----------GWTPKQAIRAL-RAL 152 (265)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEecCCC-HHHHHHHHHHHHHhcCCCCEEEEeCCC----------CcCHHHHHHHH-HHH
Confidence 456777888888999999997643211 012223334455432334444333221 24444443333 344
Q ss_pred HHcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCCee-EEEcCCCCHHHHHHHhhcCCceEEeeecCcccc-chhhhH
Q 025707 120 RRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIK-YIGLSEASPDTIRRAHAVHPITAVQLEWSLWAR-DIENEI 197 (249)
Q Consensus 120 ~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~~ 197 (249)
+.+++ .++..|-... -++.+.++++.-.+. ..|=+.++...+.++++...++++|+..+..-. ....++
T Consensus 153 ~~~~i-----~~iEeP~~~~----d~~~~~~l~~~~~ipia~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~GGi~~~~~~ 223 (265)
T cd03315 153 EDLGL-----DYVEQPLPAD----DLEGRAALARATDTPIMADESAFTPHDAFRELALGAADAVNIKTAKTGGLTKAQRV 223 (265)
T ss_pred HhcCC-----CEEECCCCcc----cHHHHHHHHhhCCCCEEECCCCCCHHHHHHHHHhCCCCEEEEecccccCHHHHHHH
Confidence 44444 4455554332 356667777765555 445566788899998888889999998766543 223789
Q ss_pred HHHHHHhCCcEEecccCcccc
Q 025707 198 VPLCRELGIGIVPYCPLGRGF 218 (249)
Q Consensus 198 ~~~~~~~gi~v~a~spl~~G~ 218 (249)
.+.|+++|+.++..+.+..|+
T Consensus 224 ~~~A~~~gi~~~~~~~~~s~i 244 (265)
T cd03315 224 LAVAEALGLPVMVGSMIESGL 244 (265)
T ss_pred HHHHHHcCCcEEecCccchHH
Confidence 999999999999877765543
No 22
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=91.16 E-value=1.9 Score=39.29 Aligned_cols=108 Identities=19% Similarity=0.217 Sum_probs=68.2
Q ss_pred CcceeecccccC----CCCCCCCHHHHHHHHHHHHHcCCCeEeCCCCcCCCchHHHHHHHHHcCCCCCeEEEeccccccc
Q 025707 22 SKLGYGCMSLSG----CYNSPLSEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELPRENIQVATKFGFVEL 97 (249)
Q Consensus 22 s~lg~Gt~~~~~----~~~~~~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~g~se~~lg~~l~~~~r~~~~I~tK~~~~~~ 97 (249)
.++++|..+|.. .-+...+.+++.++++.|.+.|+.-+-.--.||
T Consensus 149 NRiSlGVQsf~~~~lk~lgR~h~~~~~~~a~~~~~~~g~~~in~DLIyg------------------------------- 197 (416)
T COG0635 149 NRISLGVQSFNDEVLKALGRIHDEEEAKEAVELARKAGFTSINIDLIYG------------------------------- 197 (416)
T ss_pred CEEEeccccCCHHHHHHhcCCCCHHHHHHHHHHHHHcCCCcEEEEeecC-------------------------------
Confidence 367777766554 233334667777777777777777666666665
Q ss_pred CCcccccCCCHHHHHHHHHHHHHHcCCCceeEEEee-cCCCC-----------CCHH---HHHHH-HHHHHHcCCeeEEE
Q 025707 98 GFTSVIVKGTPEYVRSCCEASLRRLDVEYIDLYYQH-RVDTS-----------VPIE---ETIGE-MKKLVEEGKIKYIG 161 (249)
Q Consensus 98 ~~~~~~~~~s~~~i~~~~~~sL~~Lg~d~iDl~~lh-~~~~~-----------~~~~---~~~~~-l~~l~~~G~ir~iG 161 (249)
.|..+.+.+.+.++..+ .|+.|||.+|.+- -|... .+.+ +.++. .+.|.+.|. +.||
T Consensus 198 -----lP~QT~~~~~~~l~~a~-~l~pdhis~y~L~~~p~t~~~~~~~~~~~lP~~d~~~~~~~~~~e~L~~~Gy-~~ye 270 (416)
T COG0635 198 -----LPGQTLESLKEDLEQAL-ELGPDHLSLYSLAIEPGTKFAQRKIKGKALPDEDEKADMYELVEELLEKAGY-RQYE 270 (416)
T ss_pred -----CCCCCHHHHHHHHHHHH-hCCCCEEEEeeeecCCCchhhhhcccCCCCcChHHHHHHHHHHHHHHHHCCC-cEEe
Confidence 11245677777777666 4779999999883 33221 1111 33444 345566777 9999
Q ss_pred cCCCCH
Q 025707 162 LSEASP 167 (249)
Q Consensus 162 vs~~~~ 167 (249)
+|||..
T Consensus 271 isnfa~ 276 (416)
T COG0635 271 ISNFAK 276 (416)
T ss_pred echhcC
Confidence 999986
No 23
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=90.41 E-value=11 Score=33.85 Aligned_cols=169 Identities=17% Similarity=0.257 Sum_probs=95.4
Q ss_pred ccCcceeecccccCCCCCCCCHHHHHHHHHHHHHcCCCeEeCCCCcCC----CchHHHHHHHHHc-----CCCCCeEEEe
Q 025707 20 EVSKLGYGCMSLSGCYNSPLSEEDGISIIKHAFSKGITFFDTADKYGP----YTNEILLGKALKE-----LPRENIQVAT 90 (249)
Q Consensus 20 ~vs~lg~Gt~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~----g~se~~lg~~l~~-----~~r~~~~I~t 90 (249)
+|-+++.|-=+..+.+ -+.+++.+++..|++.|- .+.|+. -.+.+.+.+.+.+ ...++++|++
T Consensus 62 ~iipl~~GDPsv~~~~---~ts~~a~~Av~~al~Sgk-----~N~Yaps~G~~~AR~AVAeYl~~~l~~kl~a~DV~lts 133 (447)
T KOG0259|consen 62 PILPLGHGDPSVYPCF---RTSQEAEQAVVDALRSGK-----GNGYAPSVGILPARRAVAEYLNRDLPNKLTADDVVLTS 133 (447)
T ss_pred eeccCCCCCCCccccc---cCCHHHHHHHHHHHhcCC-----CCCcCCccccHHHHHHHHHHhhcCCCCccCcCceEEec
Confidence 4455666533322222 245778888888888873 245554 3588888888765 5678888877
Q ss_pred cccccccCCcccccCCCHHHHHHHHHHHHHHcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCCeeEEEcCC---C--
Q 025707 91 KFGFVELGFTSVIVKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSE---A-- 165 (249)
Q Consensus 91 K~~~~~~~~~~~~~~~s~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~---~-- 165 (249)
-. .++++-.+..|-...-. +++-+|.- ++-+ ++..... =-||++-+=. |
T Consensus 134 GC-------------------~qAIe~~i~~LA~p~aN-ILlPrPGf--p~Y~---~~a~~~~-lEVR~ydlLPe~~weI 187 (447)
T KOG0259|consen 134 GC-------------------SQAIELAISSLANPGAN-ILLPRPGF--PLYD---TRAIYSG-LEVRYYDLLPEKDWEI 187 (447)
T ss_pred cc-------------------hHHHHHHHHHhcCCCCc-eecCCCCC--chHH---HhhhhcC-ceeEeecccCccccee
Confidence 53 34455555555533333 34433422 2211 1111111 1456665522 2
Q ss_pred CHHHHHHHhhcCCce-EEeeecCc----cccchhhhHHHHHHHhCCcEEecccCcccccCCC
Q 025707 166 SPDTIRRAHAVHPIT-AVQLEWSL----WARDIENEIVPLCRELGIGIVPYCPLGRGFFGGK 222 (249)
Q Consensus 166 ~~~~l~~~~~~~~~~-~~q~~~n~----~~~~~~~~~~~~~~~~gi~v~a~spl~~G~l~g~ 222 (249)
+.++++.+++...+. ++.++.|+ +...+.+++.+.|+++||.||+--.++.=.+.++
T Consensus 188 DL~~veal~DENT~AivviNP~NPcGnVys~~HL~kiae~A~klgi~vIaDEVY~~~vfg~~ 249 (447)
T KOG0259|consen 188 DLDGVEALADENTVAIVVINPNNPCGNVYSEDHLKKIAETAKKLGIMVIADEVYGHTVFGDK 249 (447)
T ss_pred chHHHHHhhccCeeEEEEeCCCCCCcccccHHHHHHHHHHHHHhCCeEEehhhcceeecCCC
Confidence 335666666654333 34444444 3444569999999999999998666554443333
No 24
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=90.24 E-value=7.6 Score=31.51 Aligned_cols=150 Identities=18% Similarity=0.203 Sum_probs=95.2
Q ss_pred HHHHHHHHcCCCeEeCCCCcCCCchHHHHHHHHHcCCCCCeEEEecccccccCCcccccCCCHHHHHHH-----------
Q 025707 46 SIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSC----------- 114 (249)
Q Consensus 46 ~~l~~A~~~Gi~~~Dta~~Yg~g~se~~lg~~l~~~~r~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~----------- 114 (249)
++|..-++.|-+.+|-.-..| .+-+.|++ ..++.. . ....+++.+.++
T Consensus 5 ~~I~~~I~pgsrVLDLGCGdG------~LL~~L~~--~k~v~g----~---------GvEid~~~v~~cv~rGv~Viq~D 63 (193)
T PF07021_consen 5 QIIAEWIEPGSRVLDLGCGDG------ELLAYLKD--EKQVDG----Y---------GVEIDPDNVAACVARGVSVIQGD 63 (193)
T ss_pred HHHHHHcCCCCEEEecCCCch------HHHHHHHH--hcCCeE----E---------EEecCHHHHHHHHHcCCCEEECC
Confidence 456667788999999776555 45556653 111111 0 112345555444
Q ss_pred HHHHHHHcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCCHHHHHHHhhc-C-CceEEeeecCccccc
Q 025707 115 CEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAV-H-PITAVQLEWSLWARD 192 (249)
Q Consensus 115 ~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~-~-~~~~~q~~~n~~~~~ 192 (249)
+++.|..+.-+.+|.+.+... -..+..--+.|+++..-|+---|++.||.-+..+..+-. . -+..-.++|+-++..
T Consensus 64 ld~gL~~f~d~sFD~VIlsqt--LQ~~~~P~~vL~EmlRVgr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTP 141 (193)
T PF07021_consen 64 LDEGLADFPDQSFDYVILSQT--LQAVRRPDEVLEEMLRVGRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTP 141 (193)
T ss_pred HHHhHhhCCCCCccEEehHhH--HHhHhHHHHHHHHHHHhcCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCC
Confidence 555666666667777766432 122333455577778888888899999987776654442 2 244566777666532
Q ss_pred -----hhhhHHHHHHHhCCcEEecccCcccc
Q 025707 193 -----IENEIVPLCRELGIGIVPYCPLGRGF 218 (249)
Q Consensus 193 -----~~~~~~~~~~~~gi~v~a~spl~~G~ 218 (249)
--.+.-++|++.|+.|.-..++..+.
T Consensus 142 Nih~~Ti~DFe~lc~~~~i~I~~~~~~~~~~ 172 (193)
T PF07021_consen 142 NIHLCTIKDFEDLCRELGIRIEERVFLDGGR 172 (193)
T ss_pred CcccccHHHHHHHHHHCCCEEEEEEEEcCCC
Confidence 12789999999999999999988765
No 25
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=90.12 E-value=3.5 Score=34.65 Aligned_cols=105 Identities=14% Similarity=0.118 Sum_probs=68.0
Q ss_pred CCHHHHHHHHHHHHHHcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcC-CeeEEEcCCCCHHHHHHHhhcCCceEEee
Q 025707 106 GTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEG-KIKYIGLSEASPDTIRRAHAVHPITAVQL 184 (249)
Q Consensus 106 ~s~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G-~ir~iGvs~~~~~~l~~~~~~~~~~~~q~ 184 (249)
++.+...+-+ +.|..+|+++|++-....+.........++.++++++.+ .++...++....+.++.+.+. .++.+++
T Consensus 16 ~s~e~~~~i~-~~L~~~GV~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~~~~~~~~~l~~~~~~~i~~a~~~-g~~~i~i 93 (265)
T cd03174 16 FSTEDKLEIA-EALDEAGVDSIEVGSGASPKAVPQMEDDWEVLRAIRKLVPNVKLQALVRNREKGIERALEA-GVDEVRI 93 (265)
T ss_pred CCHHHHHHHH-HHHHHcCCCEEEeccCcCccccccCCCHHHHHHHHHhccCCcEEEEEccCchhhHHHHHhC-CcCEEEE
Confidence 4555554444 457789999999888765433222345788888888888 577767776666777777665 3556666
Q ss_pred ecCccc--------c------chhhhHHHHHHHhCCcEEecc
Q 025707 185 EWSLWA--------R------DIENEIVPLCRELGIGIVPYC 212 (249)
Q Consensus 185 ~~n~~~--------~------~~~~~~~~~~~~~gi~v~a~s 212 (249)
.+..-+ + ......+++++++|+.+...-
T Consensus 94 ~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~ 135 (265)
T cd03174 94 FDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSL 135 (265)
T ss_pred EEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 554431 1 112567888889998876544
No 26
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=89.93 E-value=2.9 Score=34.41 Aligned_cols=88 Identities=16% Similarity=0.189 Sum_probs=58.4
Q ss_pred HHHcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCCeeEEEcC-CCCHHHHHHHhhcCCceEEeeecCccccchhhhH
Q 025707 119 LRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLS-EASPDTIRRAHAVHPITAVQLEWSLWARDIENEI 197 (249)
Q Consensus 119 L~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs-~~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~~ 197 (249)
...+|.||+-+++.-...+....+++-+....... ++.+||. |.+.+.+.++++..+++.+|+.-. ...+.
T Consensus 18 a~~~gad~iG~If~~~SpR~Vs~~~a~~i~~~v~~---~~~VgVf~n~~~~~i~~i~~~~~ld~VQlHG~-----e~~~~ 89 (208)
T COG0135 18 AAKAGADYIGFIFVPKSPRYVSPEQAREIASAVPK---VKVVGVFVNESIEEILEIAEELGLDAVQLHGD-----EDPEY 89 (208)
T ss_pred HHHcCCCEEEEEEcCCCCCcCCHHHHHHHHHhCCC---CCEEEEECCCCHHHHHHHHHhcCCCEEEECCC-----CCHHH
Confidence 34689999998888654455555544443333322 7899986 567788999999999999999533 23556
Q ss_pred HHHHHHhC-CcEEecccC
Q 025707 198 VPLCRELG-IGIVPYCPL 214 (249)
Q Consensus 198 ~~~~~~~g-i~v~a~spl 214 (249)
++..++.. +.|+-.-+.
T Consensus 90 ~~~l~~~~~~~v~kai~v 107 (208)
T COG0135 90 IDQLKEELGVPVIKAISV 107 (208)
T ss_pred HHHHHhhcCCceEEEEEe
Confidence 66666654 666543333
No 27
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=89.37 E-value=2.9 Score=34.40 Aligned_cols=66 Identities=20% Similarity=0.224 Sum_probs=46.9
Q ss_pred HHHcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCCeeEEEcC-CCCHHHHHHHhhcCCceEEeeec
Q 025707 119 LRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLS-EASPDTIRRAHAVHPITAVQLEW 186 (249)
Q Consensus 119 L~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs-~~~~~~l~~~~~~~~~~~~q~~~ 186 (249)
+..+|.|++-+++..........+.+-+....+ .+.++.+||. +-+++.+.++++..+++++|+.-
T Consensus 19 ~~~~Gad~iGfI~~~~S~R~V~~~~a~~i~~~~--~~~i~~VgVf~~~~~~~i~~~~~~~~~d~vQLHg 85 (210)
T PRK01222 19 AAELGADAIGFVFYPKSPRYVSPEQAAELAAAL--PPFVKVVGVFVNASDEEIDEIVETVPLDLLQLHG 85 (210)
T ss_pred HHHcCCCEEEEccCCCCCCcCCHHHHHHHHHhC--CCCCCEEEEEeCCCHHHHHHHHHhcCCCEEEECC
Confidence 346999999998555444445454444443333 3568899997 67888999999889999999953
No 28
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=89.28 E-value=14 Score=32.10 Aligned_cols=184 Identities=16% Similarity=0.139 Sum_probs=94.3
Q ss_pred cceeecccccCCCCCCCCHHHHHHHHHHHHH-cCCCeEeCCCCcCCCc---hHHHHHHHHHcC--CCCCeEEEecccccc
Q 025707 23 KLGYGCMSLSGCYNSPLSEEDGISIIKHAFS-KGITFFDTADKYGPYT---NEILLGKALKEL--PRENIQVATKFGFVE 96 (249)
Q Consensus 23 ~lg~Gt~~~~~~~~~~~~~~~~~~~l~~A~~-~Gi~~~Dta~~Yg~g~---se~~lg~~l~~~--~r~~~~I~tK~~~~~ 96 (249)
.|.||+|.-........+.++..+.+...++ .|++.+|-..-|+.-. +-..+-++|+.+ .+..+.|+.-+....
T Consensus 71 iiS~GG~~g~~~~~~~~~~~~~~~a~~~~i~~y~~dgiDfDiE~~~~~d~~~~~~~~~al~~Lq~~~p~l~vs~Tlp~~p 150 (294)
T cd06543 71 IVSFGGASGTPLATSCTSADQLAAAYQKVIDAYGLTHLDFDIEGGALTDTAAIDRRAQALALLQKEYPDLKISFTLPVLP 150 (294)
T ss_pred EEEecCCCCCccccCcccHHHHHHHHHHHHHHhCCCeEEEeccCCccccchhHHHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 4677877533211122356666666666664 4999999876665321 235566666652 223455555443221
Q ss_pred cCCcccccCCCHHHHHHHHHHHHHHcCC--CceeEEEeecCCC--CCC-HHHHHHHHHHHHHcCCeeEEEcCCCCHHHHH
Q 025707 97 LGFTSVIVKGTPEYVRSCCEASLRRLDV--EYIDLYYQHRVDT--SVP-IEETIGEMKKLVEEGKIKYIGLSEASPDTIR 171 (249)
Q Consensus 97 ~~~~~~~~~~s~~~i~~~~~~sL~~Lg~--d~iDl~~lh~~~~--~~~-~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~ 171 (249)
. ..+++.+ .+-+..+.-|+ |+|.++-+..-.. ..+ -..+..+++.++.+=+--+=+ ++..++-
T Consensus 151 ~-------gl~~~g~--~~l~~a~~~Gv~~d~VNiMtmDyg~~~~~~~mg~~a~~aa~~~~~ql~~~~~~---~s~~~~~ 218 (294)
T cd06543 151 T-------GLTPDGL--NVLEAAAANGVDLDTVNIMTMDYGSSAGSQDMGAAAISAAESLHDQLKDLYPK---LSDAELW 218 (294)
T ss_pred C-------CCChhHH--HHHHHHHHcCCCcceeeeeeecCCCCCCcccHHHHHHHHHHHHHHHHHHHccC---CCHHHHH
Confidence 1 1233322 24444455664 5666555543332 122 344556666665442211111 4444444
Q ss_pred HHhhcCC-ceEEeeecCccccchhhhHHHHHHHhCCcEEecccCcccc
Q 025707 172 RAHAVHP-ITAVQLEWSLWARDIENEIVPLCRELGIGIVPYCPLGRGF 218 (249)
Q Consensus 172 ~~~~~~~-~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~spl~~G~ 218 (249)
..+...| +-.+-..-.++.....+.+.+|++++||+-+++..+.+..
T Consensus 219 ~~ig~TpMiG~nD~~~e~ft~~da~~~~~fA~~~~l~~~s~Ws~~RD~ 266 (294)
T cd06543 219 AMIGVTPMIGVNDVGSEVFTLADAQTLVDFAKEKGLGRLSMWSLNRDR 266 (294)
T ss_pred HHccccccccccCCCCceeeHHHHHHHHHHHHhCCCCeEeeeeccCCC
Confidence 4444432 1111110002222223889999999999999999987654
No 29
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=88.87 E-value=1.7 Score=35.68 Aligned_cols=67 Identities=13% Similarity=0.149 Sum_probs=49.0
Q ss_pred HHHHcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCCeeEEEcC-CCCHHHHHHHhhcCCceEEeeec
Q 025707 118 SLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLS-EASPDTIRRAHAVHPITAVQLEW 186 (249)
Q Consensus 118 sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs-~~~~~~l~~~~~~~~~~~~q~~~ 186 (249)
.+..+|.|++-+++..........+.+-+..+.+ .+.++.+||. |.+++.+.+..+..+++++|+.-
T Consensus 16 ~~~~~GaD~iGfIf~~~SpR~V~~~~a~~i~~~~--~~~~~~VgVf~~~~~~~i~~~~~~~~~d~vQLHG 83 (207)
T PRK13958 16 AASQLPIDAIGFIHYEKSKRHQTITQIKKLASAV--PNHIDKVCVVVNPDLTTIEHILSNTSINTIQLHG 83 (207)
T ss_pred HHHHcCCCEEEEecCCCCcccCCHHHHHHHHHhC--CCCCCEEEEEeCCCHHHHHHHHHhCCCCEEEECC
Confidence 3456999999998666555555555554444433 2568889995 78889999999888999999953
No 30
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=88.43 E-value=7.5 Score=32.21 Aligned_cols=149 Identities=15% Similarity=0.205 Sum_probs=80.0
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCC-CCcCCCchHHHHHHHHHcCCCCCeEEEecccccccCCcccccCCCHHHHHHHHHH
Q 025707 39 LSEEDGISIIKHAFSKGITFFDTA-DKYGPYTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEA 117 (249)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~Dta-~~Yg~g~se~~lg~~l~~~~r~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~~~~ 117 (249)
.+.++..++++...++||..|++. +..+. ...+.+.+..+..+..++..... ...+.++..++.
T Consensus 11 ~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~--------------~~~~~i~~~~~~ 75 (237)
T PF00682_consen 11 FSTEEKLEIAKALDEAGVDYIEVGFPFASE-DDFEQVRRLREALPNARLQALCR--------------ANEEDIERAVEA 75 (237)
T ss_dssp --HHHHHHHHHHHHHHTTSEEEEEHCTSSH-HHHHHHHHHHHHHHSSEEEEEEE--------------SCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCEEEEcccccCH-HHHHHhhhhhhhhcccccceeee--------------ehHHHHHHHHHh
Confidence 578999999999999999999999 44431 23334444444333333322222 235556666654
Q ss_pred HHHHcCCCceeEEEeecCC---------CCCCHHHHHHHHHHHHHcCCeeEEEcCC---CCHHHHHHHhhc---CCceEE
Q 025707 118 SLRRLDVEYIDLYYQHRVD---------TSVPIEETIGEMKKLVEEGKIKYIGLSE---ASPDTIRRAHAV---HPITAV 182 (249)
Q Consensus 118 sL~~Lg~d~iDl~~lh~~~---------~~~~~~~~~~~l~~l~~~G~ir~iGvs~---~~~~~l~~~~~~---~~~~~~ 182 (249)
. ...|.+.+.++.--+.. ....++.+.+..+..++.|....+++.. ++++.+.++.+. .+++.+
T Consensus 76 ~-~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i 154 (237)
T PF00682_consen 76 A-KEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCEDASRTDPEELLELAEALAEAGADII 154 (237)
T ss_dssp H-HHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEETTTGGSSHHHHHHHHHHHHHHT-SEE
T ss_pred h-HhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCccccccccHHHHHHHHHHHHHcCCeEE
Confidence 4 46788877766432220 0111445566677777888888888754 455554444332 234443
Q ss_pred eee--cCccccchhhhHHHHHHH
Q 025707 183 QLE--WSLWARDIENEIVPLCRE 203 (249)
Q Consensus 183 q~~--~n~~~~~~~~~~~~~~~~ 203 (249)
.+. +..+.+..-.++++..++
T Consensus 155 ~l~Dt~G~~~P~~v~~lv~~~~~ 177 (237)
T PF00682_consen 155 YLADTVGIMTPEDVAELVRALRE 177 (237)
T ss_dssp EEEETTS-S-HHHHHHHHHHHHH
T ss_pred EeeCccCCcCHHHHHHHHHHHHH
Confidence 332 233333222445555554
No 31
>cd03323 D-glucarate_dehydratase D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate. GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=88.37 E-value=19 Score=32.58 Aligned_cols=151 Identities=14% Similarity=0.086 Sum_probs=92.5
Q ss_pred CHHHHHHHHHHHHH-cCCCeEeCCCCcCCCchHHHHHHHHHcCCCCCeEEEecccccccCCcccccCCCHHHHHHHHHHH
Q 025707 40 SEEDGISIIKHAFS-KGITFFDTADKYGPYTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEAS 118 (249)
Q Consensus 40 ~~~~~~~~l~~A~~-~Gi~~~Dta~~Yg~g~se~~lg~~l~~~~r~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~~~~s 118 (249)
+.++..+.++.+.+ .|++.|=.-..-.+...+...-+++++.-. ++.|..-... .++++... +.
T Consensus 168 ~~e~~~~~a~~~~~~~Gf~~~KiKvG~~~~~~di~~v~avRea~~-~~~l~vDaN~----------~w~~~~A~----~~ 232 (395)
T cd03323 168 TPEGVVRLARAAIDRYGFKSFKLKGGVLPGEEEIEAVKALAEAFP-GARLRLDPNG----------AWSLETAI----RL 232 (395)
T ss_pred CHHHHHHHHHHHHHhcCCcEEEEecCCCCHHHHHHHHHHHHHhCC-CCcEEEeCCC----------CcCHHHHH----HH
Confidence 56667777777775 699998654311111122222334443222 3444333211 24454433 33
Q ss_pred HHHcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCCee-EEEcCCCCHHHHHHHhhcCCceEEeeecCccccc-hhhh
Q 025707 119 LRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIK-YIGLSEASPDTIRRAHAVHPITAVQLEWSLWARD-IENE 196 (249)
Q Consensus 119 L~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~~-~~~~ 196 (249)
+++|. . ++.++..|-. -++.+.+|++...+. ..|-|.++...+.++++...++++|......-.- ...+
T Consensus 233 ~~~l~--~-~l~~iEeP~~------d~~~~~~L~~~~~~PIa~dEs~~~~~~~~~~i~~~avdil~~d~~~~GGit~~~k 303 (395)
T cd03323 233 AKELE--G-VLAYLEDPCG------GREGMAEFRRATGLPLATNMIVTDFRQLGHAIQLNAVDIPLADHHFWGGMRGSVR 303 (395)
T ss_pred HHhcC--c-CCCEEECCCC------CHHHHHHHHHhcCCCEEcCCcccCHHHHHHHHHcCCCcEEeeccccccCHHHHHH
Confidence 34553 2 6667766643 467778888876555 5566778888999998888899999986654321 1278
Q ss_pred HHHHHHHhCCcEEecccC
Q 025707 197 IVPLCRELGIGIVPYCPL 214 (249)
Q Consensus 197 ~~~~~~~~gi~v~a~spl 214 (249)
+.+.|+++|+.+...+..
T Consensus 304 ia~~A~~~gi~~~~h~~~ 321 (395)
T cd03323 304 VAQVCETWGLGWGMHSNN 321 (395)
T ss_pred HHHHHHHcCCeEEEecCc
Confidence 999999999999987765
No 32
>PRK13796 GTPase YqeH; Provisional
Probab=88.18 E-value=18 Score=32.41 Aligned_cols=124 Identities=14% Similarity=0.166 Sum_probs=84.1
Q ss_pred CCHHHHHHHHHHHHHcC---CCeEeCCCCcCCCchHHHHHHHHHcCCCCCeEEEecccccccCCcccccCCCHHHHHHHH
Q 025707 39 LSEEDGISIIKHAFSKG---ITFFDTADKYGPYTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCC 115 (249)
Q Consensus 39 ~~~~~~~~~l~~A~~~G---i~~~Dta~~Yg~g~se~~lg~~l~~~~r~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~~ 115 (249)
.+.++..++++..-+.- +-.+|....-+ .-...+.+... .+.-++|.+|..... .....+.+.+-+
T Consensus 54 ~~~~~~~~~l~~i~~~~~lIv~VVD~~D~~~--s~~~~L~~~~~--~kpviLViNK~DLl~-------~~~~~~~i~~~l 122 (365)
T PRK13796 54 LTDDDFLKLLNGIGDSDALVVNVVDIFDFNG--SWIPGLHRFVG--NNPVLLVGNKADLLP-------KSVKKNKVKNWL 122 (365)
T ss_pred CCHHHHHHHHHhhcccCcEEEEEEECccCCC--chhHHHHHHhC--CCCEEEEEEchhhCC-------CccCHHHHHHHH
Confidence 57777888888887655 45567665443 22334444432 456788999987532 123456676677
Q ss_pred HHHHHHcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCCHHHHHHHh
Q 025707 116 EASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAH 174 (249)
Q Consensus 116 ~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~ 174 (249)
+...+.+|....|++.+... ....++++++.+.++.+.+.+--+|.+|..-+.+...+
T Consensus 123 ~~~~k~~g~~~~~v~~vSAk-~g~gI~eL~~~I~~~~~~~~v~vvG~~NvGKSTLiN~L 180 (365)
T PRK13796 123 RQEAKELGLRPVDVVLISAQ-KGHGIDELLEAIEKYREGRDVYVVGVTNVGKSTLINRI 180 (365)
T ss_pred HHHHHhcCCCcCcEEEEECC-CCCCHHHHHHHHHHhcCCCeEEEEcCCCCcHHHHHHHH
Confidence 77777888755577776543 34568889999988888889999999999887665543
No 33
>PRK08609 hypothetical protein; Provisional
Probab=85.63 E-value=14 Score=35.29 Aligned_cols=149 Identities=16% Similarity=0.192 Sum_probs=81.2
Q ss_pred HHHHHHHHHHcCCCeEeCCCCcCC-----CchHHHHHHHHHc-------CCCCCeEEEecccccccCCcccccCCCHHHH
Q 025707 44 GISIIKHAFSKGITFFDTADKYGP-----YTNEILLGKALKE-------LPRENIQVATKFGFVELGFTSVIVKGTPEYV 111 (249)
Q Consensus 44 ~~~~l~~A~~~Gi~~~Dta~~Yg~-----g~se~~lg~~l~~-------~~r~~~~I~tK~~~~~~~~~~~~~~~s~~~i 111 (249)
..++++.|.+.|+..|=.++++.. +.+...+-..++. ...=+|++..=+.. .++..
T Consensus 351 leemv~~A~~~Gl~~i~iTdH~~~~~~~~~~~~~~l~~~~~ei~~l~~~~~~i~Il~GiEv~i------------~~~g~ 418 (570)
T PRK08609 351 IEEMVEACIAKGYEYMAITDHSQYLKVANGLTEERLLEQAEEIKALNEKYPEIDILSGIEMDI------------LPDGS 418 (570)
T ss_pred HHHHHHHHHHCCCCEEEEeCCCCCccccCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEEEEee------------cCCcc
Confidence 445999999999999988877521 2233333333222 11112222222221 11111
Q ss_pred HHHHHHHHHHcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCCeeEEEcCC------CC--H---HHHHHHhhcCCce
Q 025707 112 RSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSE------AS--P---DTIRRAHAVHPIT 180 (249)
Q Consensus 112 ~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~------~~--~---~~l~~~~~~~~~~ 180 (249)
..-.+..|+. .||+ +.-+|++- ..+.+++++.+.++.+.|.+--||=-. .. . +.+.+++.... .
T Consensus 419 ~d~~~~~L~~--~D~v-I~SvH~~~-~~~~~~~~~~l~~a~~~~~~dILaHpd~rli~~~~~~~~d~~~i~~~a~~~G-~ 493 (570)
T PRK08609 419 LDYDDEVLAE--LDYV-IAAIHSSF-SQSEEEIMKRLENACRNPYVRLIAHPTGRLIGRRDGYDVNIDQLIELAKETN-T 493 (570)
T ss_pred hhhcHHHHHh--hCEE-EEEeecCC-CCCHHHHHHHHHHHhcCCCceEEECCCccccccCCCchHHHHHHHHHHHHhC-C
Confidence 2223334554 4665 67778653 234677888899998888887776543 11 1 23333322222 3
Q ss_pred EEeeecCccccchhhhHHHHHHHhCCcEE
Q 025707 181 AVQLEWSLWARDIENEIVPLCRELGIGIV 209 (249)
Q Consensus 181 ~~q~~~n~~~~~~~~~~~~~~~~~gi~v~ 209 (249)
++|++-+.+.......+++.|.+.|+.+.
T Consensus 494 ~lEINa~~~r~~~~~~~~~~~~e~Gv~i~ 522 (570)
T PRK08609 494 ALELNANPNRLDLSAEHLKKAQEAGVKLA 522 (570)
T ss_pred EEEEcCCccccCccHHHHHHHHHcCCEEE
Confidence 45555554433334779999999998765
No 34
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=85.27 E-value=21 Score=31.44 Aligned_cols=118 Identities=19% Similarity=0.189 Sum_probs=73.7
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCCCCcCC--------------C----chHHHHHHHHHcCCCCCeEEEecccccccCCc
Q 025707 39 LSEEDGISIIKHAFSKGITFFDTADKYGP--------------Y----TNEILLGKALKELPRENIQVATKFGFVELGFT 100 (249)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~--------------g----~se~~lg~~l~~~~r~~~~I~tK~~~~~~~~~ 100 (249)
++.+....+.+.|-+.|+-+|=|--.+.. + .....|....+ ..+.+++||-.
T Consensus 87 ~p~e~~~~Lke~a~~~Gi~~~SSPfd~~svd~l~~~~~~ayKIaS~E~~~~plik~iA~--~~kPiIlSTGm-------- 156 (347)
T COG2089 87 TPLEWHAQLKEYARKRGIIFFSSPFDLTAVDLLESLNPPAYKIASGEINDLPLIKYIAK--KGKPIILSTGM-------- 156 (347)
T ss_pred CCHHHHHHHHHHHHHcCeEEEecCCCHHHHHHHHhcCCCeEEecCccccChHHHHHHHh--cCCCEEEEccc--------
Confidence 57888999999999999988866443321 0 12223332222 34466776653
Q ss_pred ccccCCCHHHHHHHHHHHHHHcCCCceeEEEeecCCCC-CCHHHH-HHHHHHHHHcCCeeEEEcCCCCHHHHHHHhh
Q 025707 101 SVIVKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTS-VPIEET-IGEMKKLVEEGKIKYIGLSEASPDTIRRAHA 175 (249)
Q Consensus 101 ~~~~~~s~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~-~~~~~~-~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~ 175 (249)
.+-+.+.++++...++ |.. |+.++|+.+.. .+.+++ +..+-.|++.= ---||+|.|+..-+..+..
T Consensus 157 -----a~~~ei~~av~~~r~~-g~~--~i~LLhC~s~YPap~ed~NL~~i~~l~~~F-n~~vGlSDHT~g~~a~l~A 224 (347)
T COG2089 157 -----ATIEEIEEAVAILREN-GNP--DIALLHCTSAYPAPFEDVNLKAIPKLAEAF-NAIVGLSDHTLGILAPLAA 224 (347)
T ss_pred -----ccHHHHHHHHHHHHhc-CCC--CeEEEEecCCCCCCHHHhhHHHHHHHHHHh-CCccccccCccchhHHHHH
Confidence 2456777777755544 433 99999997664 445442 55555555542 4579999999875554443
No 35
>cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway. This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=85.07 E-value=27 Score=31.04 Aligned_cols=153 Identities=10% Similarity=0.064 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHHcC-CCeEeCCCCc-CCCchHHHHHHHHHcCCCCCeEEEecccccccCCcccccCCCHHHHHHHHHHH
Q 025707 41 EEDGISIIKHAFSKG-ITFFDTADKY-GPYTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEAS 118 (249)
Q Consensus 41 ~~~~~~~l~~A~~~G-i~~~Dta~~Y-g~g~se~~lg~~l~~~~r~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~~~~s 118 (249)
.++..+.+..+++.| ++.|=.--.- ......+.+ +++++.-.+++-|.--.. . .++++...+ +-+.
T Consensus 143 ~~~~~~~~~~~~~~G~f~~~KiKvg~~~~~~d~~~v-~avr~~~g~~~~l~iDaN--~--------~~~~~~A~~-~~~~ 210 (365)
T cd03318 143 TERDIAEAEEMLEAGRHRRFKLKMGARPPADDLAHV-EAIAKALGDRASVRVDVN--Q--------AWDESTAIR-ALPR 210 (365)
T ss_pred HHHHHHHHHHHHhCCCceEEEEEeCCCChHHHHHHH-HHHHHHcCCCcEEEEECC--C--------CCCHHHHHH-HHHH
Confidence 344556667778899 9988653210 100122333 444442233443432221 1 234443322 2233
Q ss_pred HHHcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCCee-EEEcCCCCHHHHHHHhhcCCceEEeeecCcccc-chhhh
Q 025707 119 LRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIK-YIGLSEASPDTIRRAHAVHPITAVQLEWSLWAR-DIENE 196 (249)
Q Consensus 119 L~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~ 196 (249)
|+.+ ++.++..|-... -++.+.+|+++..+. ..|=+.++...+.++++...++++|+.....-. ....+
T Consensus 211 l~~~-----~~~~iEeP~~~~----~~~~~~~l~~~~~~pia~dE~~~~~~~~~~~i~~~~~d~~~~d~~~~GGit~~~~ 281 (365)
T cd03318 211 LEAA-----GVELIEQPVPRE----NLDGLARLRSRNRVPIMADESVSGPADAFELARRGAADVFSLKIAKSGGLRRAQK 281 (365)
T ss_pred HHhc-----CcceeeCCCCcc----cHHHHHHHHhhcCCCEEcCcccCCHHHHHHHHHhCCCCeEEEeecccCCHHHHHH
Confidence 4444 445565553322 357777787775555 556777888999999888788899987655432 11278
Q ss_pred HHHHHHHhCCcEEecccC
Q 025707 197 IVPLCRELGIGIVPYCPL 214 (249)
Q Consensus 197 ~~~~~~~~gi~v~a~spl 214 (249)
+...|+++|+.++..+.+
T Consensus 282 ~~~~a~~~gi~~~~~~~~ 299 (365)
T cd03318 282 VAAIAEAAGIALYGGTML 299 (365)
T ss_pred HHHHHHHcCCceeecCcc
Confidence 999999999999865433
No 36
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=84.64 E-value=20 Score=29.07 Aligned_cols=145 Identities=11% Similarity=0.021 Sum_probs=86.9
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCCCCcCCCchHHHHHHHHHc----CCCCCeEEEecccccccCCcccccCCCHHHHHHHH
Q 025707 40 SEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKE----LPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCC 115 (249)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~g~se~~lg~~l~~----~~r~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~~ 115 (249)
+.+++.++++.|++.|+...|.- +..+..++.. ..++++++.-=. ...+.+++.+
T Consensus 10 d~~~~~~~v~~~l~~g~~~~~i~--------~~~l~p~m~~iG~~w~~gei~va~~~-------------~a~~~~~~~l 68 (197)
T TIGR02370 10 EEDDVVEGAQKALDAGIDPIELI--------EKGLMAGMGVVGKLFEDGELFLPHVM-------------MSADAMLAGI 68 (197)
T ss_pred CHHHHHHHHHHHHHcCCCHHHHH--------HHHHHHHHHHHHHHHcCCCccHHHHH-------------HHHHHHHHHH
Confidence 78999999999999998766643 2334444433 345666553221 2244556666
Q ss_pred HHHHHHcCCC----ceeEEEeecCCCCCCHHHHHHHHHHHHHcCC-eeEEEcCCCCHHHHHHHhhcCCceEEeeecCccc
Q 025707 116 EASLRRLDVE----YIDLYYQHRVDTSVPIEETIGEMKKLVEEGK-IKYIGLSEASPDTIRRAHAVHPITAVQLEWSLWA 190 (249)
Q Consensus 116 ~~sL~~Lg~d----~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~-ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~ 190 (249)
+.....+..+ .---+++-.+..+.+--...-...-|+..|. |.++|. +.+++.+.+.+....++++.+.+....
T Consensus 69 ~~l~~~~~~~~~~~~~~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~-~vp~e~~v~~~~~~~pd~v~lS~~~~~ 147 (197)
T TIGR02370 69 KVLTPEMEKAVETEVLGKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGR-DVPIDTVVEKVKKEKPLMLTGSALMTT 147 (197)
T ss_pred HHHHHHhhccccCCCCCeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCC-CCCHHHHHHHHHHcCCCEEEEcccccc
Confidence 6555555421 1113344444433332222333334556675 555774 566678888888888899988876655
Q ss_pred cchh-hhHHHHHHHhCC
Q 025707 191 RDIE-NEIVPLCRELGI 206 (249)
Q Consensus 191 ~~~~-~~~~~~~~~~gi 206 (249)
.... .++++.+++.|.
T Consensus 148 ~~~~~~~~i~~l~~~~~ 164 (197)
T TIGR02370 148 TMYGQKDINDKLKEEGY 164 (197)
T ss_pred CHHHHHHHHHHHHHcCC
Confidence 4333 789999999854
No 37
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=83.72 E-value=8.8 Score=32.33 Aligned_cols=113 Identities=24% Similarity=0.202 Sum_probs=61.7
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCCCCcCC------------------CchHHHHHHHHHcCCCCCeEEEecccccccCCc
Q 025707 39 LSEEDGISIIKHAFSKGITFFDTADKYGP------------------YTNEILLGKALKELPRENIQVATKFGFVELGFT 100 (249)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~------------------g~se~~lg~~l~~~~r~~~~I~tK~~~~~~~~~ 100 (249)
.+.++..++.++|-+.||.||=|...-.. =.+-..|-+.- .....++|+|=.
T Consensus 53 l~~e~~~~L~~~~~~~gi~f~stpfd~~s~d~l~~~~~~~~KIaS~dl~n~~lL~~~A--~tgkPvIlSTG~-------- 122 (241)
T PF03102_consen 53 LSEEQHKELFEYCKELGIDFFSTPFDEESVDFLEELGVPAYKIASGDLTNLPLLEYIA--KTGKPVILSTGM-------- 122 (241)
T ss_dssp S-HHHHHHHHHHHHHTT-EEEEEE-SHHHHHHHHHHT-SEEEE-GGGTT-HHHHHHHH--TT-S-EEEE-TT--------
T ss_pred CCHHHHHHHHHHHHHcCCEEEECCCCHHHHHHHHHcCCCEEEeccccccCHHHHHHHH--HhCCcEEEECCC--------
Confidence 58899999999999999999977643320 01111221111 134456666642
Q ss_pred ccccCCCHHHHHHHHHHHHHHcCCCceeEEEeecCCCC-CCHHH-HHHHHHHHHHcCCeeEEEcCCCCHHHH
Q 025707 101 SVIVKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTS-VPIEE-TIGEMKKLVEEGKIKYIGLSEASPDTI 170 (249)
Q Consensus 101 ~~~~~~s~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~-~~~~~-~~~~l~~l~~~G~ir~iGvs~~~~~~l 170 (249)
.+.+.|+++++...++- .-++.++|+.... .+.++ -+..+..|++.=- --||+|.|+....
T Consensus 123 -----stl~EI~~Av~~~~~~~---~~~l~llHC~s~YP~~~e~~NL~~i~~L~~~f~-~~vG~SDHt~g~~ 185 (241)
T PF03102_consen 123 -----STLEEIERAVEVLREAG---NEDLVLLHCVSSYPTPPEDVNLRVIPTLKERFG-VPVGYSDHTDGIE 185 (241)
T ss_dssp -------HHHHHHHHHHHHHHC---T--EEEEEE-SSSS--GGG--TTHHHHHHHHST-SEEEEEE-SSSSH
T ss_pred -----CCHHHHHHHHHHHHhcC---CCCEEEEecCCCCCCChHHcChHHHHHHHHhcC-CCEEeCCCCCCcH
Confidence 34677777777664444 4589999998664 33333 4666666665422 5789999987533
No 38
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=83.67 E-value=32 Score=30.67 Aligned_cols=146 Identities=10% Similarity=0.013 Sum_probs=91.9
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCCCCcCCCchHHHHHHHHHcCCCCCeEEEecccccccCCcccccCCCHHHHHHHHHHHH
Q 025707 40 SEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASL 119 (249)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~g~se~~lg~~l~~~~r~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL 119 (249)
+.++..+.++.+.+.|++.|=.-- .+. -+++++.-.+++.|.--.. ..++++... +.+
T Consensus 126 ~~~~~~~~a~~~~~~Gf~~~KiKv-------~~~-v~avre~~G~~~~l~vDaN----------~~w~~~~A~----~~~ 183 (361)
T cd03322 126 DIPELLEAVERHLAQGYRAIRVQL-------PKL-FEAVREKFGFEFHLLHDVH----------HRLTPNQAA----RFG 183 (361)
T ss_pred CHHHHHHHHHHHHHcCCCeEeeCH-------HHH-HHHHHhccCCCceEEEECC----------CCCCHHHHH----HHH
Confidence 456677778888889999886421 222 3344432233444433221 124454332 233
Q ss_pred HHcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCCee-EEEcCCCCHHHHHHHhhcCCceEEeeecCccccc-hhhhH
Q 025707 120 RRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIK-YIGLSEASPDTIRRAHAVHPITAVQLEWSLWARD-IENEI 197 (249)
Q Consensus 120 ~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~~-~~~~~ 197 (249)
+.|. .+++.++..|-... -++.+.+|++...+. ..|=|.++...+..++....++++|+...-.-.- ...++
T Consensus 184 ~~l~--~~~l~~iEeP~~~~----d~~~~~~L~~~~~~pia~gE~~~~~~~~~~~i~~~a~di~~~d~~~~GGit~~~~i 257 (361)
T cd03322 184 KDVE--PYRLFWMEDPTPAE----NQEAFRLIRQHTATPLAVGEVFNSIWDWQNLIQERLIDYIRTTVSHAGGITPARKI 257 (361)
T ss_pred HHhh--hcCCCEEECCCCcc----cHHHHHHHHhcCCCCEEeccCCcCHHHHHHHHHhCCCCEEecCccccCCHHHHHHH
Confidence 3342 34666776664332 367778888887665 6677888999999998888889999976654321 12789
Q ss_pred HHHHHHhCCcEEeccc
Q 025707 198 VPLCRELGIGIVPYCP 213 (249)
Q Consensus 198 ~~~~~~~gi~v~a~sp 213 (249)
.+.|+++|+.+...+.
T Consensus 258 a~~A~~~gi~~~~h~~ 273 (361)
T cd03322 258 ADLASLYGVRTGWHGP 273 (361)
T ss_pred HHHHHHcCCeeeccCC
Confidence 9999999999987543
No 39
>TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase.
Probab=83.50 E-value=30 Score=30.29 Aligned_cols=153 Identities=14% Similarity=0.071 Sum_probs=94.3
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCCCCcCCCchHHHHHHHHHcCCCCCeEEEecccccccCCcccccCCCHHHHHHHHHHHH
Q 025707 40 SEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASL 119 (249)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~g~se~~lg~~l~~~~r~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL 119 (249)
+.++..+.++.+.+.|++.|=.-- +. ..+...-+++++.- .++-|.--.. ..++++.++ .+ +.|
T Consensus 132 ~~~~~~~~a~~~~~~Gf~~~KiKv--~~-~~d~~~v~~vr~~~-~~~~l~vDaN----------~~~~~~~a~-~~-~~l 195 (324)
T TIGR01928 132 NDEQMLKQIESLKATGYKRIKLKI--TP-QIMHQLVKLRRLRF-PQIPLVIDAN----------ESYDLQDFP-RL-KEL 195 (324)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEEe--CC-chhHHHHHHHHHhC-CCCcEEEECC----------CCCCHHHHH-HH-HHH
Confidence 456677888888899999985432 11 23333444555422 2333322221 124454432 12 333
Q ss_pred HHcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCCee-EEEcCCCCHHHHHHHhhcCCceEEeeecCccccc-hhhhH
Q 025707 120 RRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIK-YIGLSEASPDTIRRAHAVHPITAVQLEWSLWARD-IENEI 197 (249)
Q Consensus 120 ~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~~-~~~~~ 197 (249)
+. .++.++..|-.. +-++.+.++++.-.+. ..|=|.++...+..++....++++|+..+-.-.- ...++
T Consensus 196 ~~-----~~~~~iEeP~~~----~~~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~~~~dvi~~d~~~~GGit~~~~~ 266 (324)
T TIGR01928 196 DR-----YQLLYIEEPFKI----DDLSMLDELAKGTITPICLDESITSLDDARNLIELGNVKVINIKPGRLGGLTEVQKA 266 (324)
T ss_pred hh-----CCCcEEECCCCh----hHHHHHHHHHhhcCCCEeeCCCcCCHHHHHHHHHcCCCCEEEeCcchhcCHHHHHHH
Confidence 33 355666655332 3356777887765554 5577888999999999888899999876654321 12789
Q ss_pred HHHHHHhCCcEEecccCccc
Q 025707 198 VPLCRELGIGIVPYCPLGRG 217 (249)
Q Consensus 198 ~~~~~~~gi~v~a~spl~~G 217 (249)
.+.|+++|+.++..+.+..|
T Consensus 267 ~~~A~~~gi~~~~~~~~es~ 286 (324)
T TIGR01928 267 IETCREHGAKVWIGGMLETG 286 (324)
T ss_pred HHHHHHcCCeEEEcceEccc
Confidence 99999999999887766555
No 40
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=83.27 E-value=25 Score=29.26 Aligned_cols=145 Identities=13% Similarity=0.049 Sum_probs=73.3
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCCCCcCCCchHHHHHHHHHcCCCCCeEEEe--------------cccccccCCcccccC
Q 025707 40 SEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELPRENIQVAT--------------KFGFVELGFTSVIVK 105 (249)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~g~se~~lg~~l~~~~r~~~~I~t--------------K~~~~~~~~~~~~~~ 105 (249)
+.+++.+++. .|+..+..+...- .+-..+.+..+....+.+.++- +.|.... .
T Consensus 82 s~~d~~~~l~----~G~~~v~ig~~~~--~~p~~~~~i~~~~~~~~i~~~ld~k~~~~~~~~v~~~~~~~~~-------~ 148 (243)
T cd04731 82 SLEDARRLLR----AGADKVSINSAAV--ENPELIREIAKRFGSQCVVVSIDAKRRGDGGYEVYTHGGRKPT-------G 148 (243)
T ss_pred CHHHHHHHHH----cCCceEEECchhh--hChHHHHHHHHHcCCCCEEEEEEeeecCCCceEEEEcCCceec-------C
Confidence 5666666654 5887777665443 2334555555544334455443 2222110 1
Q ss_pred CCHHHHHHHHHHHHHHcCCCceeEEEeecCCCCCCHH-HHHHHHHHHHHcCCeeEEEcCCC-CHHHHHHHhhcCCceEEe
Q 025707 106 GTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIE-ETIGEMKKLVEEGKIKYIGLSEA-SPDTIRRAHAVHPITAVQ 183 (249)
Q Consensus 106 ~s~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~-~~~~~l~~l~~~G~ir~iGvs~~-~~~~l~~~~~~~~~~~~q 183 (249)
.+. ..+-+.++.+|+++ +.+|..+...... --++.+.++++.-.+.-|..... +++.+.++.+...++.+.
T Consensus 149 ~~~----~~~~~~l~~~G~d~---i~v~~i~~~g~~~g~~~~~i~~i~~~~~~pvia~GGi~~~~di~~~l~~~g~dgv~ 221 (243)
T cd04731 149 LDA----VEWAKEVEELGAGE---ILLTSMDRDGTKKGYDLELIRAVSSAVNIPVIASGGAGKPEHFVEAFEEGGADAAL 221 (243)
T ss_pred CCH----HHHHHHHHHCCCCE---EEEeccCCCCCCCCCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHhCCCCEEE
Confidence 111 12224455667654 6666544321100 13555666666555666655543 567888877766666666
Q ss_pred eecCccccch-hhhHHHHHHHh
Q 025707 184 LEWSLWARDI-ENEIVPLCREL 204 (249)
Q Consensus 184 ~~~n~~~~~~-~~~~~~~~~~~ 204 (249)
+---++.... ..++.+.|++|
T Consensus 222 vg~al~~~~~~~~~~~~~~~~~ 243 (243)
T cd04731 222 AASIFHFGEYTIAELKEYLAER 243 (243)
T ss_pred EeHHHHcCCCCHHHHHHHHhhC
Confidence 6333333221 25566666654
No 41
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=83.10 E-value=31 Score=30.17 Aligned_cols=132 Identities=12% Similarity=0.016 Sum_probs=84.1
Q ss_pred CHHHHHHHHHHHHHcCCCeEeC---CC-----CcCCC----chHHHHHHHHHcC---CCCCeEEEecccccccCCccccc
Q 025707 40 SEEDGISIIKHAFSKGITFFDT---AD-----KYGPY----TNEILLGKALKEL---PRENIQVATKFGFVELGFTSVIV 104 (249)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~Dt---a~-----~Yg~g----~se~~lg~~l~~~---~r~~~~I~tK~~~~~~~~~~~~~ 104 (249)
+.++..+....+.+.|+..||- +| .||.| ..-+.+.+.++.. -.+++-|+-|+....
T Consensus 73 ~p~~~~~aA~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvKiR~g~-------- 144 (312)
T PRK10550 73 YPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVTVKVRLGW-------- 144 (312)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHhcCCCcceEEEEECCC--------
Confidence 5777778888888999999993 22 35543 3344555555541 122467888875422
Q ss_pred CCCHHHHHHHHHHHHHHcCCCceeEEEeecCCCCCCHHH---HHHHHHHHHHcCCeeEEEcCCC-CHHHHHHHhhcCCce
Q 025707 105 KGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEE---TIGEMKKLVEEGKIKYIGLSEA-SPDTIRRAHAVHPIT 180 (249)
Q Consensus 105 ~~s~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~---~~~~l~~l~~~G~ir~iGvs~~-~~~~l~~~~~~~~~~ 180 (249)
+ +.+. ...+-+.|+..|+ |.+.+|.......... -|+...++++.-.|.-||..+. +++..+++++....+
T Consensus 145 ~-~~~~-~~~~a~~l~~~Gv---d~i~Vh~Rt~~~~y~g~~~~~~~i~~ik~~~~iPVi~nGdI~t~~da~~~l~~~g~D 219 (312)
T PRK10550 145 D-SGER-KFEIADAVQQAGA---TELVVHGRTKEDGYRAEHINWQAIGEIRQRLTIPVIANGEIWDWQSAQQCMAITGCD 219 (312)
T ss_pred C-CchH-HHHHHHHHHhcCC---CEEEECCCCCccCCCCCcccHHHHHHHHhhcCCcEEEeCCcCCHHHHHHHHhccCCC
Confidence 0 1122 2355566777775 6677887544322211 3778888888877888888774 778888888777777
Q ss_pred EEee
Q 025707 181 AVQL 184 (249)
Q Consensus 181 ~~q~ 184 (249)
.+++
T Consensus 220 gVmi 223 (312)
T PRK10550 220 AVMI 223 (312)
T ss_pred EEEE
Confidence 7766
No 42
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
Probab=82.07 E-value=15 Score=30.30 Aligned_cols=88 Identities=13% Similarity=0.054 Sum_probs=61.3
Q ss_pred eeEEEeecCCCCCCHHHHHHHHHHHHHcCCee-EEEcCCCCHHHHHHHhhcCCceEEeeecCccccc-hhhhHHHHHHHh
Q 025707 127 IDLYYQHRVDTSVPIEETIGEMKKLVEEGKIK-YIGLSEASPDTIRRAHAVHPITAVQLEWSLWARD-IENEIVPLCREL 204 (249)
Q Consensus 127 iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~~-~~~~~~~~~~~~ 204 (249)
.++.++..|-...+ ++.+.+|.+...+. ..+=|.++...+.+++....++++|+..+..-.- ...++.+.|+++
T Consensus 120 ~~i~~iEeP~~~~d----~~~~~~L~~~~~~pIa~dEs~~~~~~~~~~~~~~~~d~~~~k~~~~GGi~~~~~i~~~a~~~ 195 (229)
T cd00308 120 YGLAWIEEPCAPDD----LEGYAALRRRTGIPIAADESVTTVDDALEALELGAVDILQIKPTRVGGLTESRRAADLAEAF 195 (229)
T ss_pred cCCCeEECCCCccC----HHHHHHHHhhCCCCEEeCCCCCCHHHHHHHHHcCCCCEEecCccccCCHHHHHHHHHHHHHc
Confidence 46667766644332 45566777776555 3455667788887888877889999976665321 127899999999
Q ss_pred CCcEEecccCcccc
Q 025707 205 GIGIVPYCPLGRGF 218 (249)
Q Consensus 205 gi~v~a~spl~~G~ 218 (249)
|+.++..+.+..|+
T Consensus 196 gi~~~~~~~~~s~i 209 (229)
T cd00308 196 GIRVMVHGTLESSI 209 (229)
T ss_pred CCEEeecCCCCCHH
Confidence 99999988776543
No 43
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=82.06 E-value=25 Score=28.43 Aligned_cols=145 Identities=16% Similarity=0.112 Sum_probs=86.1
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCCCCcCCCchHHHHHHHHHc----CCCCCeEEEecccccccCCcccccCCCHHHHHHHH
Q 025707 40 SEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKE----LPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCC 115 (249)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~g~se~~lg~~l~~----~~r~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~~ 115 (249)
+++++.+++..|++.|+...|.- +..+..+++. ..++++++..=. ...+.+++.+
T Consensus 9 D~~~~~~~v~~~l~~g~~~~~i~--------~~~l~p~m~~vG~~w~~~~i~va~e~-------------~as~~~~~~l 67 (201)
T cd02070 9 DEEETVELVKKALEAGIDPQDII--------EEGLAPGMDIVGDKYEEGEIFVPELL-------------MAADAMKAGL 67 (201)
T ss_pred CHHHHHHHHHHHHHcCCCHHHHH--------HHHHHHHHHHHHHHHccCCeeHHHHH-------------HHHHHHHHHH
Confidence 78999999999999997655432 2334444433 345666654321 1234455555
Q ss_pred HHHHHHcCCCc---eeEEEeecCCCCCCHHHHHHHHHHHHHcCCe-eEEEcCCCCHHHHHHHhhcCCceEEeeecCcccc
Q 025707 116 EASLRRLDVEY---IDLYYQHRVDTSVPIEETIGEMKKLVEEGKI-KYIGLSEASPDTIRRAHAVHPITAVQLEWSLWAR 191 (249)
Q Consensus 116 ~~sL~~Lg~d~---iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~i-r~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~ 191 (249)
......+.... ---+++..+..+.+--...=.-.-|+..|+= .++| .+.+++.+.+.+....++++-+.++....
T Consensus 68 ~~l~~~~~~~~~~~~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG-~~~p~~~l~~~~~~~~~d~v~lS~~~~~~ 146 (201)
T cd02070 68 DLLKPLLGKSKSAKKGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLG-RDVPPEEFVEAVKEHKPDILGLSALMTTT 146 (201)
T ss_pred HHHHHHHhhcCCCCCCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECC-CCCCHHHHHHHHHHcCCCEEEEecccccc
Confidence 55555443321 1134555544433322222223456677764 5567 66778888888888888888887765544
Q ss_pred chh-hhHHHHHHHhCC
Q 025707 192 DIE-NEIVPLCRELGI 206 (249)
Q Consensus 192 ~~~-~~~~~~~~~~gi 206 (249)
... ..+++.+++.+.
T Consensus 147 ~~~~~~~i~~lr~~~~ 162 (201)
T cd02070 147 MGGMKEVIEALKEAGL 162 (201)
T ss_pred HHHHHHHHHHHHHCCC
Confidence 322 778888888853
No 44
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=82.05 E-value=13 Score=33.38 Aligned_cols=60 Identities=18% Similarity=0.163 Sum_probs=38.8
Q ss_pred CCHHHHHHHHHHHHHHcCCCceeEEEeec-CCCC-----------CC-HH---H-HHHHHHHHHHcCCeeEEEcCCCCH
Q 025707 106 GTPEYVRSCCEASLRRLDVEYIDLYYQHR-VDTS-----------VP-IE---E-TIGEMKKLVEEGKIKYIGLSEASP 167 (249)
Q Consensus 106 ~s~~~i~~~~~~sL~~Lg~d~iDl~~lh~-~~~~-----------~~-~~---~-~~~~l~~l~~~G~ir~iGvs~~~~ 167 (249)
.+.+.+.+.++..+ .|+.++|.++.+.- |... .+ -+ + ...+.+.|.+.|. ..+++|||..
T Consensus 167 qt~~~~~~~l~~~~-~l~~~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy-~~yeis~fa~ 243 (370)
T PRK06294 167 QSLSDFIVDLHQAI-TLPITHISLYNLTIDPHTSFYKHRKRLLPSIADEEILAEMSLAAEELLTSQGF-TRYELASYAK 243 (370)
T ss_pred CCHHHHHHHHHHHH-ccCCCeEEEeeeEecCCChHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHcCC-CeeeeeeeeC
Confidence 57888888888776 48999999998853 3210 01 11 1 2234566777787 4578888764
No 45
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=81.86 E-value=12 Score=33.85 Aligned_cols=60 Identities=18% Similarity=0.057 Sum_probs=31.5
Q ss_pred CCHHHHHHHHHHHHHHcCCCceeEEEeec-CCCC------------CCHHH---H-HHHHHHHHHcCCeeEEEcCCCCH
Q 025707 106 GTPEYVRSCCEASLRRLDVEYIDLYYQHR-VDTS------------VPIEE---T-IGEMKKLVEEGKIKYIGLSEASP 167 (249)
Q Consensus 106 ~s~~~i~~~~~~sL~~Lg~d~iDl~~lh~-~~~~------------~~~~~---~-~~~l~~l~~~G~ir~iGvs~~~~ 167 (249)
.+.+.+++.++..+ +|+.++|.++.+.- |... .+.++ . ..+.+.|.+.|.. .+++|||..
T Consensus 179 qt~e~~~~tl~~~~-~l~p~~is~y~L~~~pgT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~L~~~Gy~-~yeisnfa~ 255 (400)
T PRK07379 179 QTLEDWQASLEAAI-ALNPTHLSCYDLVLEPGTAFGKQYQPGKAPLPSDETTAAMYRLAQEILTQAGYE-HYEISNYAK 255 (400)
T ss_pred CCHHHHHHHHHHHH-cCCCCEEEEecceecCCchhHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHcCCc-eeeeeheEC
Confidence 35666666666544 36777777776642 2110 01111 1 2345556666764 567777753
No 46
>PRK08392 hypothetical protein; Provisional
Probab=81.69 E-value=27 Score=28.54 Aligned_cols=151 Identities=17% Similarity=0.161 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHcCCCeEeCCCCcCCCchHHHHHHHHHc---C-CCCCeEEEecccccccCCcccccCCCHHHHHHHHHH
Q 025707 42 EDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKE---L-PRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEA 117 (249)
Q Consensus 42 ~~~~~~l~~A~~~Gi~~~Dta~~Yg~g~se~~lg~~l~~---~-~r~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~~~~ 117 (249)
....+.++.|.+.|++.|=.+.+.... ....+-..+++ . .+.++.| ..|... +..+.. .+..++
T Consensus 14 ~~~~e~v~~A~~~Gl~~i~iTdH~~~~-~~~~~~~y~~~i~~l~~~~~i~i--l~GiE~--------~~~~~~-~~~~~~ 81 (215)
T PRK08392 14 GSVRDNIAEAERKGLRLVGISDHIHYF-TPSKFNAYINEIRQWGEESEIVV--LAGIEA--------NITPNG-VDITDD 81 (215)
T ss_pred CCHHHHHHHHHHcCCCEEEEccCCCcc-chhhHHHHHHHHHHHhhccCceE--EEeEEe--------eecCCc-chhHHH
Confidence 346788999999999999766654210 11112222211 1 1223322 222211 011111 223334
Q ss_pred HHHHcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCCeeEEEcCCC--------CHHHHHHHhhc---CCceEEeeec
Q 025707 118 SLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEA--------SPDTIRRAHAV---HPITAVQLEW 186 (249)
Q Consensus 118 sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~--------~~~~l~~~~~~---~~~~~~q~~~ 186 (249)
.+++ .|++ +..+|........++.++.+.++.+.+.+.-+|=-.. ..+.+.++++. .. +.++.
T Consensus 82 ~~~~--~D~v-I~SvH~~~~~~~~~~Y~~~~~~~~~~~~~dvlgH~d~~~~~~~~~~~~~~~~i~~~~~~~g---~~lEi 155 (215)
T PRK08392 82 FAKK--LDYV-IASVHEWFGRPEHHEYIELVKLALMDENVDIIGHFGNSFPYIGYPSEEELKEILDLAEAYG---KAFEI 155 (215)
T ss_pred HHhh--CCEE-EEEeecCcCCcHHHHHHHHHHHHHhcCCCCEEeCCCccccCCCCchHHHHHHHHHHHHHhC---CEEEE
Confidence 4443 4665 6677854333345677888888888887666654221 11232322222 11 11222
Q ss_pred CccccchhhhHHHHHHHhCCcEEe
Q 025707 187 SLWARDIENEIVPLCRELGIGIVP 210 (249)
Q Consensus 187 n~~~~~~~~~~~~~~~~~gi~v~a 210 (249)
|-..+.+...+++.|++.|+.++.
T Consensus 156 Nt~~~~p~~~~l~~~~~~G~~~~i 179 (215)
T PRK08392 156 SSRYRVPDLEFIRECIKRGIKLTF 179 (215)
T ss_pred eCCCCCCCHHHHHHHHHcCCEEEE
Confidence 221222236789999999987653
No 47
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=81.41 E-value=36 Score=29.74 Aligned_cols=153 Identities=14% Similarity=0.130 Sum_probs=86.1
Q ss_pred CCCHHHHHHHHHHHHHcCCCeEeCCCCcCCCchHHHHHHH---HHcC-CCCCeEEEecccccccCCcccccCCCHHHHHH
Q 025707 38 PLSEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKA---LKEL-PRENIQVATKFGFVELGFTSVIVKGTPEYVRS 113 (249)
Q Consensus 38 ~~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~g~se~~lg~~---l~~~-~r~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~ 113 (249)
..+.++..++++.+.+.|++.+.-+. |...-..-+-+. ++.. .-.++.|+|-... +.+
T Consensus 48 ~ls~eei~~~i~~~~~~gi~~I~~tG--GEPll~~~l~~li~~i~~~~~~~~i~itTNG~l----------------l~~ 109 (331)
T PRK00164 48 LLSLEEIERLVRAFVALGVRKVRLTG--GEPLLRKDLEDIIAALAALPGIRDLALTTNGYL----------------LAR 109 (331)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEEEC--CCCcCccCHHHHHHHHHhcCCCceEEEEcCchh----------------HHH
Confidence 36789999999999999998887543 211111112223 3322 1235666665321 112
Q ss_pred HHHHHHHHcCCCceeEEEeecCCC--------CCCHHHHHHHHHHHHHcCC----eeEEEcCCCCHHHHHHHhhc---CC
Q 025707 114 CCEASLRRLDVEYIDLYYQHRVDT--------SVPIEETIGEMKKLVEEGK----IKYIGLSEASPDTIRRAHAV---HP 178 (249)
Q Consensus 114 ~~~~sL~~Lg~d~iDl~~lh~~~~--------~~~~~~~~~~l~~l~~~G~----ir~iGvs~~~~~~l~~~~~~---~~ 178 (249)
.+ ..|...|++.+- +-+|..++ ...+++++++++.+++.|. |..+.+...+.+.+.++.+. .+
T Consensus 110 ~~-~~L~~agl~~i~-ISlds~~~e~~~~i~~~~~~~~vl~~i~~~~~~g~~~v~i~~vv~~g~n~~ei~~l~~~~~~~g 187 (331)
T PRK00164 110 RA-AALKDAGLDRVN-VSLDSLDPERFKAITGRDRLDQVLAGIDAALAAGLTPVKVNAVLMKGVNDDEIPDLLEWAKDRG 187 (331)
T ss_pred HH-HHHHHcCCCEEE-EEeccCCHHHhccCCCCCCHHHHHHHHHHHHHCCCCcEEEEEEEECCCCHHHHHHHHHHHHhCC
Confidence 22 345556766553 44454433 2357899999999999885 33555545565565555443 44
Q ss_pred ceEEeeecCccccc---------hhhhHHHHHHHhCCcEEe
Q 025707 179 ITAVQLEWSLWARD---------IENEIVPLCRELGIGIVP 210 (249)
Q Consensus 179 ~~~~q~~~n~~~~~---------~~~~~~~~~~~~gi~v~a 210 (249)
+.+.-++|.++... ...++++.++++|+.+..
T Consensus 188 v~v~~ie~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 228 (331)
T PRK00164 188 IQLRFIELMPTGEGNEWFRKHHLSGAEIRARLAERGWTLQP 228 (331)
T ss_pred CeEEEEEeeECCCCcchhhhcCCCHHHHHHHHHhccCcccc
Confidence 55544555543321 125688888888765443
No 48
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=81.39 E-value=25 Score=31.18 Aligned_cols=60 Identities=15% Similarity=0.077 Sum_probs=36.6
Q ss_pred CCHHHHHHHHHHHHHHcCCCceeEEEeec-CCCC--------CCHHHH-HHHHHHHHHcCCeeEEEcCCCCH
Q 025707 106 GTPEYVRSCCEASLRRLDVEYIDLYYQHR-VDTS--------VPIEET-IGEMKKLVEEGKIKYIGLSEASP 167 (249)
Q Consensus 106 ~s~~~i~~~~~~sL~~Lg~d~iDl~~lh~-~~~~--------~~~~~~-~~~l~~l~~~G~ir~iGvs~~~~ 167 (249)
.+.+.+++.++..+ +++.+++.++.+.- |... .+-++. ..+.+.|.+.|. ..+++|||..
T Consensus 162 qt~~~~~~~l~~~~-~l~~~~is~y~L~~~~gT~l~~~~~~~~~~~~~~~~~~~~l~~~Gy-~~yeis~fa~ 231 (350)
T PRK08446 162 DNKKLLKEELKLAK-ELPINHLSAYSLTIEENTPFFEKNHKKKDDENLAKFFIEQLEELGF-KQYEISNFGK 231 (350)
T ss_pred CCHHHHHHHHHHHH-hcCCCEEEeccceecCCChhHHhhhcCCCHHHHHHHHHHHHHHCCC-cEEEeehhhC
Confidence 46777877776644 58888888887753 2211 111222 333556667776 4688888764
No 49
>COG1140 NarY Nitrate reductase beta subunit [Energy production and conversion]
Probab=81.06 E-value=0.83 Score=40.58 Aligned_cols=54 Identities=17% Similarity=0.327 Sum_probs=37.7
Q ss_pred cCCeeEEEcCCCCHHHHHHHhhcC-CceEEeeecCccccchhhhHHHHHHHhCCc
Q 025707 154 EGKIKYIGLSEASPDTIRRAHAVH-PITAVQLEWSLWARDIENEIVPLCRELGIG 207 (249)
Q Consensus 154 ~G~ir~iGvs~~~~~~l~~~~~~~-~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~ 207 (249)
-|+||++||--++.+.+.++.... .-+..+.+..++.......+++.+++.||+
T Consensus 263 VGriRYlGVlLYDaDrv~eaAs~~~e~dly~~Q~~ifLDP~DP~Vi~~A~k~Gip 317 (513)
T COG1140 263 VGRIRYLGVLLYDADRVEEAASTENEKDLYERQLDVFLDPHDPAVIEQARKDGIP 317 (513)
T ss_pred hcceeeeeeeeecHHHHHHhhcCccHHHHHHHHHhhhcCCCCHHHHHHHHHcCCc
Confidence 399999999999999999887652 223333333443322346788888888886
No 50
>PRK07945 hypothetical protein; Provisional
Probab=80.32 E-value=41 Score=29.72 Aligned_cols=154 Identities=14% Similarity=0.101 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHHcCCCeEeCCCCcCC-----CchHHHHHHHHHcC---C--CCCeEEEecccccccCCcccccCCCHHH
Q 025707 41 EEDGISIIKHAFSKGITFFDTADKYGP-----YTNEILLGKALKEL---P--RENIQVATKFGFVELGFTSVIVKGTPEY 110 (249)
Q Consensus 41 ~~~~~~~l~~A~~~Gi~~~Dta~~Yg~-----g~se~~lg~~l~~~---~--r~~~~I~tK~~~~~~~~~~~~~~~s~~~ 110 (249)
.....+++++|.+.|+..+=.+.+... +-+...+-+.+..+ + -.++-| +.|.... ..++.+.+.
T Consensus 110 ~~~~ee~v~~Ai~~Gl~~i~~TDH~p~~~~~~~~~~~~l~~y~~~i~~l~~ky~~I~I--l~GiE~d----~~~~g~~~~ 183 (335)
T PRK07945 110 GSPIEEMARTAAALGHEYCALTDHSPRLTVANGLSAERLRKQLDVVAELNEELAPFRI--LTGIEVD----ILDDGSLDQ 183 (335)
T ss_pred CCCHHHHHHHHHHCCCCEEEEeCCCCCccCCCCCCHHHHHHHHHHHHHHHHhcCCceE--EEEeEec----ccCCCCcch
Confidence 345779999999999999876655421 11222222222221 1 112222 2222110 001112222
Q ss_pred HHHHHHHHHHHcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCCeeEEEcCC---------------CCHHHHHHHhh
Q 025707 111 VRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSE---------------ASPDTIRRAHA 175 (249)
Q Consensus 111 i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~---------------~~~~~l~~~~~ 175 (249)
.++.|+. .||+ +..+|+... .+.++..+.+.++.+.+.+..+|=-+ +..+.+.+++.
T Consensus 184 ----~~~~l~~--~D~v-IgSvH~~~~-~~~~~~~~~l~~ai~~~~~dvlgH~D~~~~~~~~~~~~~~~~~~~~i~~a~~ 255 (335)
T PRK07945 184 ----EPELLDR--LDVV-VASVHSKLR-MDAAAMTRRMLAAVANPHTDVLGHCTGRLVTGNRGTRPESKFDAEAVFAACR 255 (335)
T ss_pred ----hHHHHHh--CCEE-EEEeecCCC-CCHHHHHHHHHHHhcCCCCeEEecCchhhhccccCCCChhhcCHHHHHHHHH
Confidence 2333443 4665 667787643 33466678888888888877777321 12223333322
Q ss_pred cCCceEEeeecCccccchhhhHHHHHHHhCCcEE
Q 025707 176 VHPITAVQLEWSLWARDIENEIVPLCRELGIGIV 209 (249)
Q Consensus 176 ~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~ 209 (249)
.... .+.++.+.....+...+++.|++.|+.++
T Consensus 256 e~g~-~lEINt~~~r~~P~~~il~~a~e~G~~vt 288 (335)
T PRK07945 256 EHGT-AVEINSRPERRDPPTRLLRLALDAGCLFS 288 (335)
T ss_pred HhCC-EEEEeCCCCCCCChHHHHHHHHHcCCeEE
Confidence 2211 22333333323334679999999998865
No 51
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=80.17 E-value=13 Score=35.80 Aligned_cols=66 Identities=14% Similarity=0.107 Sum_probs=48.3
Q ss_pred HHcCCCceeEEEeecCCCCCCHHH-HHHHHHHHHHcCCeeEEEcC-CCCHHHHHHHhhcCCceEEeeec
Q 025707 120 RRLDVEYIDLYYQHRVDTSVPIEE-TIGEMKKLVEEGKIKYIGLS-EASPDTIRRAHAVHPITAVQLEW 186 (249)
Q Consensus 120 ~~Lg~d~iDl~~lh~~~~~~~~~~-~~~~l~~l~~~G~ir~iGvs-~~~~~~l~~~~~~~~~~~~q~~~ 186 (249)
..+|.|++-+++..........+. +-+..+.+ ....++.|||- |-+++.+.+..+...++++|+.-
T Consensus 20 ~~~gaD~iGfIf~~~SpR~V~~~~~a~~i~~~l-~~~~v~~VgVfv~~~~~~i~~~~~~~~ld~vQLHG 87 (610)
T PRK13803 20 VDMLPDFIGFIFYEKSPRFVGNKFLAPNLEKAI-RKAGGRPVGVFVNESAKAMLKFSKKNGIDFVQLHG 87 (610)
T ss_pred HHcCCCEEEEEecCCCCCCCCHHHHHHHHHHhC-CCCCCCEEEEEeCCCHHHHHHHHHhcCCCEEEECC
Confidence 458999999987776555566666 33333333 22357789995 88889999999889999999964
No 52
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=80.06 E-value=14 Score=31.91 Aligned_cols=102 Identities=11% Similarity=0.043 Sum_probs=61.3
Q ss_pred CCHHHHHHHHHHHHHHcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCCHHHHHHHhhcCCceEEeee
Q 025707 106 GTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAVHPITAVQLE 185 (249)
Q Consensus 106 ~s~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~~ 185 (249)
++.+. +..+-+.|.++|+++|++-.+++|.......+.++.+..+.+...++...+. .+...++.+.+. .++.+.+.
T Consensus 23 ~s~e~-k~~ia~~L~~~Gv~~IEvgsf~~p~~~p~~~d~~e~~~~l~~~~~~~~~~l~-~~~~~ie~A~~~-g~~~v~i~ 99 (287)
T PRK05692 23 IPTAD-KIALIDRLSAAGLSYIEVASFVSPKWVPQMADAAEVMAGIQRRPGVTYAALT-PNLKGLEAALAA-GADEVAVF 99 (287)
T ss_pred cCHHH-HHHHHHHHHHcCCCEEEeCCCcCcccccccccHHHHHHhhhccCCCeEEEEe-cCHHHHHHHHHc-CCCEEEEE
Confidence 34443 3456667999999999998666554332233345666666554446666655 578888888776 23333332
Q ss_pred --cCccc------cc------hhhhHHHHHHHhCCcEEe
Q 025707 186 --WSLWA------RD------IENEIVPLCRELGIGIVP 210 (249)
Q Consensus 186 --~n~~~------~~------~~~~~~~~~~~~gi~v~a 210 (249)
.|..+ .. .....+++++++|+.+.+
T Consensus 100 ~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~ 138 (287)
T PRK05692 100 ASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRG 138 (287)
T ss_pred EecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 22111 11 015789999999998864
No 53
>PRK05660 HemN family oxidoreductase; Provisional
Probab=79.91 E-value=17 Score=32.73 Aligned_cols=27 Identities=11% Similarity=0.061 Sum_probs=17.2
Q ss_pred CCHHHHHHHHHHHHHHcCCCceeEEEee
Q 025707 106 GTPEYVRSCCEASLRRLDVEYIDLYYQH 133 (249)
Q Consensus 106 ~s~~~i~~~~~~sL~~Lg~d~iDl~~lh 133 (249)
.+.+.+.+.++..++ ++.++|.++.+-
T Consensus 171 qt~~~~~~~l~~~~~-l~p~~is~y~l~ 197 (378)
T PRK05660 171 QSLEEALDDLRQAIA-LNPPHLSWYQLT 197 (378)
T ss_pred CCHHHHHHHHHHHHh-cCCCeEEeeccE
Confidence 456666666665444 777777777663
No 54
>TIGR01502 B_methylAsp_ase methylaspartate ammonia-lyase. This model describes methylaspartate ammonia-lyase, also called beta-methylaspartase (EC 4.3.1.2). It follows methylaspartate mutase (composed of S and E subunits) in one of several possible pathways of glutamate fermentation.
Probab=78.80 E-value=45 Score=30.46 Aligned_cols=86 Identities=12% Similarity=-0.026 Sum_probs=63.1
Q ss_pred eEEEeecCCCCCCHHHHHHHHHHHHHc------CCeeEEEcCCCCHHHHHHHhhcCCceEEeeecCccccch-hhhHHHH
Q 025707 128 DLYYQHRVDTSVPIEETIGEMKKLVEE------GKIKYIGLSEASPDTIRRAHAVHPITAVQLEWSLWARDI-ENEIVPL 200 (249)
Q Consensus 128 Dl~~lh~~~~~~~~~~~~~~l~~l~~~------G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~~~-~~~~~~~ 200 (249)
++ ++..|-+..+.++.++.+.+|++. ..=-..+=|.++.+.+.++++..-.+++|+..+-.-.-. ..++.++
T Consensus 265 ~~-~iEqPv~~~d~~~~~e~la~Lr~~~~~~~~~vPI~aDEs~~t~~d~~~~i~~~a~d~v~iK~~k~GGIt~a~kia~l 343 (408)
T TIGR01502 265 HL-RIEGPMDVGSRQAQIEAMADLRAELDGRGVDAEIVADEWCNTVEDVKFFTDAKAGHMVQIKTPDVGGVNNIARAIMY 343 (408)
T ss_pred Ce-EEecCCCCCcchhhHHHHHHHHHHhhcCCCCceEEecCCCCCHHHHHHHHHhCCCCEEEeCccccCCHHHHHHHHHH
Confidence 44 777776554445667777888765 333445667788999999998888899999876543211 2789999
Q ss_pred HHHhCCcEEecccC
Q 025707 201 CRELGIGIVPYCPL 214 (249)
Q Consensus 201 ~~~~gi~v~a~spl 214 (249)
|+++||.++..+..
T Consensus 344 A~~~Gi~~~~g~~~ 357 (408)
T TIGR01502 344 CKANGMGAYVGGTC 357 (408)
T ss_pred HHHcCCEEEEeCCC
Confidence 99999999987665
No 55
>cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway. D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=78.54 E-value=48 Score=29.40 Aligned_cols=153 Identities=12% Similarity=0.103 Sum_probs=92.8
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCCCCcCCC--------chHHHHHHHHHcCCCCCeEEEecccccccCCcccccCCCHHHH
Q 025707 40 SEEDGISIIKHAFSKGITFFDTADKYGPY--------TNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYV 111 (249)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~g--------~se~~lg~~l~~~~r~~~~I~tK~~~~~~~~~~~~~~~s~~~i 111 (249)
+.++..+.+..+.+.|++.|=.--....+ ..+...-+++++.-.+++.|.--... .++++.
T Consensus 123 ~~~~~~~~~~~~~~~Gf~~~KiKvg~~~~~~~~~~~~~~D~~~i~avr~~~g~~~~l~vDaN~----------~~~~~~- 191 (352)
T cd03325 123 RPSDVAEAARARREAGFTAVKMNATEELQWIDTSKKVDAAVERVAALREAVGPDIDIGVDFHG----------RVSKPM- 191 (352)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecCCCCcccCCCHHHHHHHHHHHHHHHHhhCCCCEEEEECCC----------CCCHHH-
Confidence 45666677788889999999765332110 12333444555422234444332211 234443
Q ss_pred HHHHHHHHHHcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCCee-EEEcCCCCHHHHHHHhhcCCceEEeeecCccc
Q 025707 112 RSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIK-YIGLSEASPDTIRRAHAVHPITAVQLEWSLWA 190 (249)
Q Consensus 112 ~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~ 190 (249)
..+.++.|. ..++.++..|-... -++.+.+|+++.-+. ..|=|.++...+..++....++++|......-
T Consensus 192 ---A~~~~~~l~--~~~i~~iEeP~~~~----d~~~~~~L~~~~~~pia~dEs~~~~~~~~~~~~~~~~d~v~~d~~~~G 262 (352)
T cd03325 192 ---AKDLAKELE--PYRLLFIEEPVLPE----NVEALAEIAARTTIPIATGERLFSRWDFKELLEDGAVDIIQPDISHAG 262 (352)
T ss_pred ---HHHHHHhcc--ccCCcEEECCCCcc----CHHHHHHHHHhCCCCEEecccccCHHHHHHHHHhCCCCEEecCccccC
Confidence 333334442 33556666664332 367788888775554 55667789999999888777889999865543
Q ss_pred c-chhhhHHHHHHHhCCcEEecc
Q 025707 191 R-DIENEIVPLCRELGIGIVPYC 212 (249)
Q Consensus 191 ~-~~~~~~~~~~~~~gi~v~a~s 212 (249)
. ....++.+.|+++|+.++..+
T Consensus 263 Git~~~~~~~lA~~~gi~~~~h~ 285 (352)
T cd03325 263 GITELKKIAAMAEAYDVALAPHC 285 (352)
T ss_pred CHHHHHHHHHHHHHcCCcEeccC
Confidence 2 122789999999999999765
No 56
>COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog [Amino acid transport and metabolism]
Probab=78.12 E-value=28 Score=30.53 Aligned_cols=107 Identities=14% Similarity=0.146 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHcCCCeEeCCCCcCCCchHHHHHHHHHcCCCCCeEEEecccccccCCcccccCCCHHHHHHHHHHHHHH
Q 025707 42 EDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRR 121 (249)
Q Consensus 42 ~~~~~~l~~A~~~Gi~~~Dta~~Yg~g~se~~lg~~l~~~~r~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~~ 121 (249)
...+++|+.+.+.|| .+|.|. -+++..-.+++ -.+..+|.|........ ++.+.--.++++...++
T Consensus 149 ~~Gk~lV~~~N~LgI-iiDlSH-----~s~kt~~Dvl~--~s~~PviaSHSN~~al~------~h~RNl~D~qlkaI~~~ 214 (313)
T COG2355 149 PFGKELVREMNELGI-IIDLSH-----LSDKTFWDVLD--LSKAPVVASHSNARALV------DHPRNLSDEQLKAIAET 214 (313)
T ss_pred HHHHHHHHHHHhcCC-EEEecc-----cCCccHHHHHh--ccCCceEEecCCchhcc------CCCCCCCHHHHHHHHhc
Confidence 568899999999998 899997 46778888887 45666677776554422 22233334555665556
Q ss_pred cCCCceeEEEeecC-C----CCCCHHHHHHHHHHHHHcCCeeEEEcCC
Q 025707 122 LDVEYIDLYYQHRV-D----TSVPIEETIGEMKKLVEEGKIKYIGLSE 164 (249)
Q Consensus 122 Lg~d~iDl~~lh~~-~----~~~~~~~~~~~l~~l~~~G~ir~iGvs~ 164 (249)
=| -|.+.++-.. . ....++++++.++.+++.+=+++||+.+
T Consensus 215 gG--vIgv~~~~~fl~~~~~~~atldd~v~hI~h~v~~~G~dhVglGs 260 (313)
T COG2355 215 GG--VIGVNFIPAFLRPGGAARATLDDLVRHIDHFVELVGIDHVGLGS 260 (313)
T ss_pred CC--EEEEEeehhhccCCCCCCCCHHHHHHHHHHHHHhcCcceeEecc
Confidence 55 3444444221 1 3457899999999999999999999975
No 57
>cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid. MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=78.11 E-value=49 Score=29.33 Aligned_cols=153 Identities=9% Similarity=0.039 Sum_probs=89.9
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCCCCcCCCchHHHHHHHHHcCCCCCeEEEecccccccCCcccccCCCHHHHHHHHHHHH
Q 025707 40 SEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASL 119 (249)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~g~se~~lg~~l~~~~r~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL 119 (249)
+.++..+.++.+.+.|++.|=.--...+-..+...-+++++.-.+++.|..-... .++++...+-++ .|
T Consensus 141 ~~~~~~~~a~~~~~~Gf~~~KiKvg~~~~~~d~~~v~air~~~g~~~~l~vDaN~----------~~~~~~A~~~~~-~l 209 (355)
T cd03321 141 GAKLATERAVTAAEEGFHAVKTKIGYPTADEDLAVVRSIRQAVGDGVGLMVDYNQ----------SLTVPEAIERGQ-AL 209 (355)
T ss_pred hHHHHHHHHHHHHHhhhHHHhhhcCCCChHhHHHHHHHHHHhhCCCCEEEEeCCC----------CcCHHHHHHHHH-HH
Confidence 3456667777778889987754322111123334444555433345555443211 245554333333 23
Q ss_pred HHcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCCee-EEEcCCCCHHHHHHHhhcCCceEEeeecCccccc-hhhhH
Q 025707 120 RRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIK-YIGLSEASPDTIRRAHAVHPITAVQLEWSLWARD-IENEI 197 (249)
Q Consensus 120 ~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~~-~~~~~ 197 (249)
+.+ ++.++..|-... -++.+.+|++.--|. ..|=+.++...+.++++...++++|+..+-.-.- ...++
T Consensus 210 ~~~-----~i~~iEeP~~~~----d~~~~~~l~~~~~ipia~~E~~~~~~~~~~~i~~~~~d~i~~~~~~~GGit~~~~i 280 (355)
T cd03321 210 DQE-----GLTWIEEPTLQH----DYEGHARIASALRTPVQMGENWLGPEEMFKALSAGACDLVMPDLMKIGGVTGWLRA 280 (355)
T ss_pred HcC-----CCCEEECCCCCc----CHHHHHHHHHhcCCCEEEcCCCcCHHHHHHHHHhCCCCeEecCHhhhCCHHHHHHH
Confidence 444 445565554332 356666777664322 4566678899999998888889999876654321 12679
Q ss_pred HHHHHHhCCcEEecc
Q 025707 198 VPLCRELGIGIVPYC 212 (249)
Q Consensus 198 ~~~~~~~gi~v~a~s 212 (249)
.+.|+++|+.++...
T Consensus 281 a~~A~~~gi~~~~h~ 295 (355)
T cd03321 281 SALAEQAGIPMSSHL 295 (355)
T ss_pred HHHHHHcCCeecccc
Confidence 999999999987654
No 58
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=78.07 E-value=14 Score=34.14 Aligned_cols=28 Identities=25% Similarity=0.258 Sum_probs=22.6
Q ss_pred CCHHHHHHHHHHHHHHcCCCceeEEEeec
Q 025707 106 GTPEYVRSCCEASLRRLDVEYIDLYYQHR 134 (249)
Q Consensus 106 ~s~~~i~~~~~~sL~~Lg~d~iDl~~lh~ 134 (249)
.+.+.+++.++..+ .|+.++++++.+.-
T Consensus 227 qT~e~~~~~l~~~~-~l~~~~is~y~L~~ 254 (449)
T PRK09058 227 QTPEIWQQDLAIVR-DLGLDGVDLYALNL 254 (449)
T ss_pred CCHHHHHHHHHHHH-hcCCCEEEEecccc
Confidence 56788888888766 48999999998864
No 59
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=77.66 E-value=43 Score=31.49 Aligned_cols=132 Identities=12% Similarity=0.152 Sum_probs=76.6
Q ss_pred hHHHHHHHHHc----CCCCCeEEEecccccccCCcccccCCCHHHHHHHHHHHHHHcCCCceeEEEeecCCCCCC----H
Q 025707 70 NEILLGKALKE----LPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVP----I 141 (249)
Q Consensus 70 se~~lg~~l~~----~~r~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~----~ 141 (249)
+++-|-+++++ .+.+-++|.+- ..++-|-+.++...+.++.+.++++.++.+.-... .
T Consensus 69 ~~~~L~~aI~~~~~~~~P~~I~V~sT--------------C~selIGdDi~~~~~~~~~~~~pvi~v~t~gf~g~~~~g~ 134 (511)
T TIGR01278 69 SQTRLVDTVRRVDDRFKPDLIVVTPS--------------CTSSLLQEDLGNLAAAAGLDKSKVIVADVNAYRRKENQAA 134 (511)
T ss_pred hHHHHHHHHHHHHHhcCCCEEEEeCC--------------ChHHHhccCHHHHHHHhccCCCcEEEecCCCcccchhHHH
Confidence 67777777776 22333444443 23555666677777777765678999988865433 2
Q ss_pred HHHHHHHHH-H----------HHcCCeeEEEcCCC------CHHHHHHHhhcCCceEEee-e---------------cCc
Q 025707 142 EETIGEMKK-L----------VEEGKIKYIGLSEA------SPDTIRRAHAVHPITAVQL-E---------------WSL 188 (249)
Q Consensus 142 ~~~~~~l~~-l----------~~~G~ir~iGvs~~------~~~~l~~~~~~~~~~~~q~-~---------------~n~ 188 (249)
+.+++++-+ + .+.+.|.-||.++. +...+.++++..++.++.+ + +|+
T Consensus 135 ~~al~~lv~~~~~~~~~~~~~~~~~~VNIiG~~~l~~~~~~D~~elkrlL~~lGi~vn~v~p~g~s~~dl~~l~~A~~NI 214 (511)
T TIGR01278 135 DRTLTQLVRRFAKEQPKPGRTTEKPSVNLLGPASLGFHHRHDLIELRRLLKTLGIEVNVVAPWGASIADLARLPAAWLNI 214 (511)
T ss_pred HHHHHHHHHHHHhccccccccCCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHhcccCcEEE
Confidence 223332221 1 13466888998763 4467777777777666544 2 223
Q ss_pred c-ccchhhhHHHHHHH-hCCcEEecccCc
Q 025707 189 W-ARDIENEIVPLCRE-LGIGIVPYCPLG 215 (249)
Q Consensus 189 ~-~~~~~~~~~~~~~~-~gi~v~a~spl~ 215 (249)
. .+.....+-++.++ .|++.+...|++
T Consensus 215 v~~~~~g~~~A~~Le~~fGiP~i~~~PiG 243 (511)
T TIGR01278 215 CPYREIGLMAAEYLKEKFGQPYITTTPIG 243 (511)
T ss_pred EechHHHHHHHHHHHHHhCCCcccccccC
Confidence 2 11112334555543 399998877775
No 60
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=77.28 E-value=20 Score=32.45 Aligned_cols=83 Identities=17% Similarity=0.197 Sum_probs=51.2
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCCCCcCCCchHHHHHHHHHcCCCCCeEEEecccccccCCcccccCCCHHHHHHHHHHHH
Q 025707 40 SEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASL 119 (249)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~g~se~~lg~~l~~~~r~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL 119 (249)
+......++++|++.|++++|||.... ....+... ..+..+.+..-.|.. |..+--.....+++..
T Consensus 77 p~~~~~~i~ka~i~~gv~yvDts~~~~---~~~~~~~~---a~~Agit~v~~~G~d--------PGi~nv~a~~a~~~~~ 142 (389)
T COG1748 77 PPFVDLTILKACIKTGVDYVDTSYYEE---PPWKLDEE---AKKAGITAVLGCGFD--------PGITNVLAAYAAKELF 142 (389)
T ss_pred CchhhHHHHHHHHHhCCCEEEcccCCc---hhhhhhHH---HHHcCeEEEcccCcC--------cchHHHHHHHHHHHhh
Confidence 445566999999999999999997664 32222222 234455555555432 2233333333333333
Q ss_pred HHcCCCceeEEEeecCCCC
Q 025707 120 RRLDVEYIDLYYQHRVDTS 138 (249)
Q Consensus 120 ~~Lg~d~iDl~~lh~~~~~ 138 (249)
+ .++++|+|..+.++..
T Consensus 143 ~--~i~si~iy~g~~g~~~ 159 (389)
T COG1748 143 D--EIESIDIYVGGLGEHG 159 (389)
T ss_pred c--cccEEEEEEecCCCCC
Confidence 3 5889999999988765
No 61
>TIGR02534 mucon_cyclo muconate and chloromuconate cycloisomerases. This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2).
Probab=76.21 E-value=57 Score=29.07 Aligned_cols=151 Identities=9% Similarity=0.005 Sum_probs=87.1
Q ss_pred HHHHHHHH-HcCCCeEeCCCCcCCCchHHHHHHHHHcCCCCCeEEEecccccccCCcccccCCCHHHHHHHHHHHHHHcC
Q 025707 45 ISIIKHAF-SKGITFFDTADKYGPYTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLD 123 (249)
Q Consensus 45 ~~~l~~A~-~~Gi~~~Dta~~Yg~g~se~~lg~~l~~~~r~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~~Lg 123 (249)
.+-++.++ +.|++.|=.--.-.+-..+...-+++++.-.+++.|.--.. . .++++...+- -+.|+.+
T Consensus 146 ~~~~~~~~~~~Gf~~~KiKvg~~~~~~d~~~v~~~re~~g~~~~l~~DaN--~--------~~~~~~A~~~-~~~l~~~- 213 (368)
T TIGR02534 146 IAEAEERIEEKRHRSFKLKIGARDPADDVAHVVAIAKALGDRASVRVDVN--A--------AWDERTALHY-LPQLADA- 213 (368)
T ss_pred HHHHHHHHHhcCcceEEEEeCCCCcHHHHHHHHHHHHhcCCCcEEEEECC--C--------CCCHHHHHHH-HHHHHhc-
Confidence 34455555 47999986532110111223333455543333444432221 1 2445443332 2233333
Q ss_pred CCceeEEEeecCCCCCCHHHHHHHHHHHHHcCCee-EEEcCCCCHHHHHHHhhcCCceEEeeecCcccc-chhhhHHHHH
Q 025707 124 VEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIK-YIGLSEASPDTIRRAHAVHPITAVQLEWSLWAR-DIENEIVPLC 201 (249)
Q Consensus 124 ~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~~~~~~ 201 (249)
++.++..|-... -++.+.+|++...+. ..|=|.++...+.+++....++++|+...-.-. ....++...|
T Consensus 214 ----~~~~iEeP~~~~----d~~~~~~l~~~~~~pia~dE~~~~~~~~~~~~~~~~~d~~~~d~~~~GGi~~~~~i~~lA 285 (368)
T TIGR02534 214 ----GVELIEQPTPAE----NREALARLTRRFNVPIMADESVTGPADALAIAKASAADVFALKTTKSGGLLESKKIAAIA 285 (368)
T ss_pred ----ChhheECCCCcc----cHHHHHHHHHhCCCCEEeCcccCCHHHHHHHHHhCCCCEEEEcccccCCHHHHHHHHHHH
Confidence 455666654332 356667777776555 667788899999998888788899987665432 1127799999
Q ss_pred HHhCCcEEecccCc
Q 025707 202 RELGIGIVPYCPLG 215 (249)
Q Consensus 202 ~~~gi~v~a~spl~ 215 (249)
+++|+.++..+.+.
T Consensus 286 ~~~gi~~~~~~~~~ 299 (368)
T TIGR02534 286 EAAGIALYGGTMLE 299 (368)
T ss_pred HHcCCceeeecchh
Confidence 99999998765443
No 62
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=74.68 E-value=21 Score=32.97 Aligned_cols=60 Identities=22% Similarity=0.247 Sum_probs=39.5
Q ss_pred CCHHHHHHHHHHHHHHcCCCceeEEEe-ecCCCC-----------CCHHH----HHHHHHHHHHcCCeeEEEcCCCCH
Q 025707 106 GTPEYVRSCCEASLRRLDVEYIDLYYQ-HRVDTS-----------VPIEE----TIGEMKKLVEEGKIKYIGLSEASP 167 (249)
Q Consensus 106 ~s~~~i~~~~~~sL~~Lg~d~iDl~~l-h~~~~~-----------~~~~~----~~~~l~~l~~~G~ir~iGvs~~~~ 167 (249)
.+.+.+.+.++..+ +|+.+++.++.+ |.|... .+.++ ...+.+.|.+.|.. .+++++|..
T Consensus 216 qt~e~~~~tl~~~~-~l~p~~i~~y~l~~~p~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~L~~~Gy~-~~~~~~far 291 (453)
T PRK13347 216 QTVESFRETLDKVI-ALSPDRIAVFGYAHVPSRRKNQRLIDEAALPDAEERLRQARAVADRLLAAGYV-PIGLDHFAL 291 (453)
T ss_pred CCHHHHHHHHHHHH-hcCCCEEEEeccccccchhhHHhcCCccCCcCHHHHHHHHHHHHHHHHHCCCE-EEeccceeC
Confidence 56888888887766 689999999876 333210 11222 23455677888875 489999875
No 63
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=74.65 E-value=51 Score=27.84 Aligned_cols=25 Identities=12% Similarity=0.222 Sum_probs=22.3
Q ss_pred CCCHHHHHHHHHHHHHcCCCeEeCC
Q 025707 38 PLSEEDGISIIKHAFSKGITFFDTA 62 (249)
Q Consensus 38 ~~~~~~~~~~l~~A~~~Gi~~~Dta 62 (249)
..+.++..++++...++||..++..
T Consensus 18 ~~~~~~k~~i~~~L~~~Gv~~iEvg 42 (263)
T cd07943 18 QFTLEQVRAIARALDAAGVPLIEVG 42 (263)
T ss_pred ecCHHHHHHHHHHHHHcCCCEEEee
Confidence 3578999999999999999999997
No 64
>COG1801 Uncharacterized conserved protein [Function unknown]
Probab=74.40 E-value=54 Score=27.98 Aligned_cols=108 Identities=7% Similarity=-0.055 Sum_probs=66.9
Q ss_pred cceeecccccCCCCCC-CCHHHHHHHHHHHHHcCCCeEeCCC-CcCCCchHHHHHHHHHcCCCCCeEEEecccccccCCc
Q 025707 23 KLGYGCMSLSGCYNSP-LSEEDGISIIKHAFSKGITFFDTAD-KYGPYTNEILLGKALKELPRENIQVATKFGFVELGFT 100 (249)
Q Consensus 23 ~lg~Gt~~~~~~~~~~-~~~~~~~~~l~~A~~~Gi~~~Dta~-~Yg~g~se~~lg~~l~~~~r~~~~I~tK~~~~~~~~~ 100 (249)
.||.++|+... |... ++++...+-....+...+|.++.-. .|. -.+++.+-++.+ ...+++..+-|........
T Consensus 4 ~IG~sGW~~~~-w~~~~yp~~~~~~~~L~~y~~~f~~VEiN~TFYa-~p~~~t~~~W~~-~~p~~FrFsvK~~~~iTH~- 79 (263)
T COG1801 4 YIGTSGWSYPD-WEGLFYPEGLKKKEFLAYYASHFNTVEINSTFYA-PPSPETVLRWAE-ETPDDFRFSVKAPRAITHQ- 79 (263)
T ss_pred EEeecCCCccc-ccccccCcccchhhHHHHHhccCCEEEECCcccC-CCCHHHHHHHHH-hCCCCeEEEEEecccccch-
Confidence 46666666554 3332 3444444444455566677776544 444 357888888888 4789999999997654211
Q ss_pred ccccCCCH---HHHHHHHHHHHHHcCCCceeEEEeecCCCCC
Q 025707 101 SVIVKGTP---EYVRSCCEASLRRLDVEYIDLYYQHRVDTSV 139 (249)
Q Consensus 101 ~~~~~~s~---~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~ 139 (249)
.... ..+.+.+.+.++.|| +++..+++.-|..-.
T Consensus 80 ----~~l~~~~~~~~~~~~~~~~~L~-~klg~il~Q~Ppsf~ 116 (263)
T COG1801 80 ----RRLKECDFELWEFFLEPLAPLG-ERLGPILFQLPPSFK 116 (263)
T ss_pred ----hhhccchHHHHHHHHHHHHhhh-cccceEEEecCCccc
Confidence 1122 334445555566777 589999999886653
No 65
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=74.27 E-value=30 Score=29.39 Aligned_cols=102 Identities=17% Similarity=0.138 Sum_probs=63.5
Q ss_pred CCHHHHHHHHHHHHHHcCCCceeEEEe-ecCCCC-CC----HHHHHHHHHHHHHcCCeeEEEcCCCCHHHHHHHhhcCCc
Q 025707 106 GTPEYVRSCCEASLRRLDVEYIDLYYQ-HRVDTS-VP----IEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAVHPI 179 (249)
Q Consensus 106 ~s~~~i~~~~~~sL~~Lg~d~iDl~~l-h~~~~~-~~----~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~ 179 (249)
.+.+.+.+.+.+.+ +-|.|.||+-.- .+|... .+ .+.+...++.+++.-.+. +.+-+++++.++++++.. .
T Consensus 21 ~~~~~~~~~a~~~~-~~GAdiIDIG~~st~p~~~~i~~~~E~~rl~~~v~~i~~~~~~p-lSIDT~~~~v~e~al~~G-~ 97 (257)
T cd00739 21 LSLDKAVAHAEKMI-AEGADIIDIGGESTRPGADPVSVEEELERVIPVLEALRGELDVL-ISVDTFRAEVARAALEAG-A 97 (257)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCc-EEEeCCCHHHHHHHHHhC-C
Confidence 35566655555554 568999999743 234322 12 233444556666553333 888899999999999874 2
Q ss_pred eEEeeecCccccchhhhHHHHHHHhCCcEEeccc
Q 025707 180 TAVQLEWSLWARDIENEIVPLCRELGIGIVPYCP 213 (249)
Q Consensus 180 ~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~sp 213 (249)
+ +-++.+....+ .++++.++++|..++.+..
T Consensus 98 ~-iINdisg~~~~--~~~~~l~~~~~~~vV~m~~ 128 (257)
T cd00739 98 D-IINDVSGGSDD--PAMLEVAAEYGAPLVLMHM 128 (257)
T ss_pred C-EEEeCCCCCCC--hHHHHHHHHcCCCEEEECC
Confidence 2 22233333221 6799999999999999543
No 66
>PLN02363 phosphoribosylanthranilate isomerase
Probab=74.10 E-value=16 Score=31.06 Aligned_cols=65 Identities=20% Similarity=0.245 Sum_probs=45.8
Q ss_pred HcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCCeeEEEcC-CCCHHHHHHHhhcCCceEEeeec
Q 025707 121 RLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLS-EASPDTIRRAHAVHPITAVQLEW 186 (249)
Q Consensus 121 ~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs-~~~~~~l~~~~~~~~~~~~q~~~ 186 (249)
++|.|++-+++..........+.+-+....+. ...++.|||. +-+++.+.+..+..+++++|+.-
T Consensus 65 ~~GaD~iGfIf~~~SpR~Vs~e~a~~I~~~l~-~~~~~~VgVfv~~~~~~I~~~~~~~~ld~VQLHG 130 (256)
T PLN02363 65 EAGADFIGMILWPKSKRSISLSVAKEISQVAR-EGGAKPVGVFVDDDANTILRAADSSDLELVQLHG 130 (256)
T ss_pred HcCCCEEEEecCCCCCCcCCHHHHHHHHHhcc-ccCccEEEEEeCCCHHHHHHHHHhcCCCEEEECC
Confidence 58999999986554444455555444444332 2246679985 88889999999889999999953
No 67
>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised.
Probab=73.75 E-value=53 Score=27.54 Aligned_cols=153 Identities=17% Similarity=0.196 Sum_probs=87.7
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCCC-CcCC-C-chHHHHHHHHHcCCCCCeEEEecccccccCCcccccCCCHHHHHHHHH
Q 025707 40 SEEDGISIIKHAFSKGITFFDTAD-KYGP-Y-TNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCE 116 (249)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~Dta~-~Yg~-g-~se~~lg~~l~~~~r~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~~~ 116 (249)
+.+|+ ..|++.|..+||.-+ .-|. | ....++.+... ......-+|..++-.+ ..|..+..+..
T Consensus 9 ~~~EA----~~a~~~gaDiID~K~P~~GaLGA~~~~vi~~i~~-~~~~~~pvSAtiGDlp---------~~p~~~~~aa~ 74 (235)
T PF04476_consen 9 NVEEA----EEALAGGADIIDLKNPAEGALGALFPWVIREIVA-AVPGRKPVSATIGDLP---------MKPGTASLAAL 74 (235)
T ss_pred CHHHH----HHHHhCCCCEEEccCCCCCCCCCCCHHHHHHHHH-HcCCCCceEEEecCCC---------CCchHHHHHHH
Confidence 45555 457788999999853 3331 1 34445544433 3333455777766332 34566665555
Q ss_pred HHHHHcCCCceeEEEeecCCCCCCHHHHH----HHHHHHHHcCCeeEEEcCCCC------HHHHHHHhhcCCceEEeeec
Q 025707 117 ASLRRLDVEYIDLYYQHRVDTSVPIEETI----GEMKKLVEEGKIKYIGLSEAS------PDTIRRAHAVHPITAVQLEW 186 (249)
Q Consensus 117 ~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~----~~l~~l~~~G~ir~iGvs~~~------~~~l~~~~~~~~~~~~q~~~ 186 (249)
..- .-|+||+=+-+.-..+... ..+.+ +++..+..+-++-.++++.+. +-.+-+......++.++++-
T Consensus 75 ~~a-~~GvdyvKvGl~g~~~~~~-a~e~l~~v~~av~~~~~~~~vVAv~yAD~~r~~~~~p~~l~~~a~~aG~~gvMlDT 152 (235)
T PF04476_consen 75 GAA-ATGVDYVKVGLFGCKDYDE-AIEALEAVVRAVKDFDPDKKVVAVGYADAQRVGSISPLDLPEIAAEAGFDGVMLDT 152 (235)
T ss_pred HHH-hcCCCEEEEecCCCCCHHH-HHHHHHHHHHHHhhhCCCcEEEEEEecchhhhcCCCHHHHHHHHHHcCCCEEEEec
Confidence 444 4599998888774433221 22222 333333344578888998874 45555555556788888753
Q ss_pred ------Ccccc---chhhhHHHHHHHhCCcE
Q 025707 187 ------SLWAR---DIENEIVPLCRELGIGI 208 (249)
Q Consensus 187 ------n~~~~---~~~~~~~~~~~~~gi~v 208 (249)
++++. ....+.++.|+++|+.+
T Consensus 153 a~Kdg~~L~d~~~~~~L~~Fv~~ar~~gL~~ 183 (235)
T PF04476_consen 153 ADKDGGSLFDHLSEEELAEFVAQARAHGLMC 183 (235)
T ss_pred ccCCCCchhhcCCHHHHHHHHHHHHHccchh
Confidence 22222 22267888888888763
No 68
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=73.15 E-value=74 Score=29.01 Aligned_cols=116 Identities=16% Similarity=0.123 Sum_probs=63.8
Q ss_pred CHHHHHHHHHHHHHcCCCeE-eCCCCcCCCchHHHHHHHHHcCCCCCeEEEecccccccC----CcccccCCCHHHHHHH
Q 025707 40 SEEDGISIIKHAFSKGITFF-DTADKYGPYTNEILLGKALKELPRENIQVATKFGFVELG----FTSVIVKGTPEYVRSC 114 (249)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~-Dta~~Yg~g~se~~lg~~l~~~~r~~~~I~tK~~~~~~~----~~~~~~~~s~~~i~~~ 114 (249)
+.++-.+=++.|.+.|-..+ |-|- .| .-..+-+.+- ....+-|.|---+.... ......+.+++.+.+.
T Consensus 75 d~~~E~~K~~~A~~~GADtiMDLSt-gg---dl~~iR~~il--~~s~vpvGTVPiYqa~~~~~~k~~~~~~mt~d~~~~~ 148 (431)
T PRK13352 75 DIEEELEKAKVAVKYGADTIMDLST-GG---DLDEIRRAII--EASPVPVGTVPIYQAAVEAARKYGSVVDMTEDDLFDV 148 (431)
T ss_pred CHHHHHHHHHHHHHcCCCeEeeccC-CC---CHHHHHHHHH--HcCCCCCcChhHHHHHHHHHhcCCChhhCCHHHHHHH
Confidence 45555566899999997544 5553 33 3333444432 12222222211000000 0012335678888777
Q ss_pred HHHHHHHcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCCHHHHHHHh
Q 025707 115 CEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAH 174 (249)
Q Consensus 115 ~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~ 174 (249)
+++..+ +-+|++-+|.- -..+.++.+++.|+ ..|+-+-.-+-+..++
T Consensus 149 ie~qa~----~GVDfmTiHcG-------i~~~~~~~~~~~~R--~~giVSRGGs~~~~WM 195 (431)
T PRK13352 149 IEKQAK----DGVDFMTIHCG-------VTRETLERLKKSGR--IMGIVSRGGSFLAAWM 195 (431)
T ss_pred HHHHHH----hCCCEEEEccc-------hhHHHHHHHHhcCC--ccCeecCCHHHHHHHH
Confidence 776665 56688999985 24677888898885 5566555544444444
No 69
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=72.17 E-value=13 Score=34.37 Aligned_cols=65 Identities=18% Similarity=0.230 Sum_probs=47.2
Q ss_pred HHHcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCCeeEEEcC-CCCHHHHHHHhhcCCceEEeeecC
Q 025707 119 LRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLS-EASPDTIRRAHAVHPITAVQLEWS 187 (249)
Q Consensus 119 L~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs-~~~~~~l~~~~~~~~~~~~q~~~n 187 (249)
...+|.|++-+++..........+.+-+....+. ++.|||- |-+++.+.+..+..+++++|+.-+
T Consensus 273 a~~~GaD~lGfIf~~~SpR~V~~~~a~~i~~~l~----v~~VgVfv~~~~~~i~~i~~~~~lD~vQLHG~ 338 (454)
T PRK09427 273 AYDAGAVYGGLIFVEKSPRYVSLEQAQEIIAAAP----LRYVGVFRNADIEDIVDIAKQLSLAAVQLHGD 338 (454)
T ss_pred HHhCCCCEEeeEeCCCCCCCCCHHHHHHHHHhCC----CCEEEEEeCCCHHHHHHHHHHcCCCEEEeCCC
Confidence 4568999999986555444455555544444433 8889997 788899999888889999999643
No 70
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=71.91 E-value=33 Score=31.37 Aligned_cols=61 Identities=13% Similarity=-0.058 Sum_probs=39.3
Q ss_pred CCCHHHHHHHHHHHHHHcCCCceeEEEeecCCCC-------CCHH---HHH-HHHHHHHHcCCeeEEEcCCCCH
Q 025707 105 KGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTS-------VPIE---ETI-GEMKKLVEEGKIKYIGLSEASP 167 (249)
Q Consensus 105 ~~s~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~-------~~~~---~~~-~~l~~l~~~G~ir~iGvs~~~~ 167 (249)
..+.+.+.+.++..+ +|+.+++.++.+.-.... ...+ +.+ .+.+.|.+.|. +.+++++|..
T Consensus 204 ~qt~e~~~~~l~~~~-~l~~~~is~y~L~~~~~T~l~~~~~~~~~~~~~m~~~~~~~L~~~Gy-~~yei~~far 275 (430)
T PRK08208 204 GQTHASWMESLDQAL-VYRPEELFLYPLYVRPLTGLGRRARAWDDQRLSLYRLARDLLLEAGY-TQTSMRMFRR 275 (430)
T ss_pred CCCHHHHHHHHHHHH-hCCCCEEEEccccccCCCccchhcCCCHHHHHHHHHHHHHHHHHcCC-eEEeecceec
Confidence 357888888888776 589999999987532221 0111 222 34556677786 4588888875
No 71
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=71.89 E-value=79 Score=28.75 Aligned_cols=116 Identities=13% Similarity=0.093 Sum_probs=63.4
Q ss_pred CHHHHHHHHHHHHHcCCCeE-eCCCCcCCCchHHHHHHHHHcCCCCCeEEEecccccccC-CcccccCCCHHHHHHHHHH
Q 025707 40 SEEDGISIIKHAFSKGITFF-DTADKYGPYTNEILLGKALKELPRENIQVATKFGFVELG-FTSVIVKGTPEYVRSCCEA 117 (249)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~-Dta~~Yg~g~se~~lg~~l~~~~r~~~~I~tK~~~~~~~-~~~~~~~~s~~~i~~~~~~ 117 (249)
+.++-.+=++.|++.|-..+ |-| ..| .-..+-+.+- ....+-|.|---+.... ......+.+++.+.+.+++
T Consensus 75 d~~~E~~K~~~A~~~GADtiMDLS-tGg---dl~~iR~~il--~~s~vpvGTVPiYqa~~~~~~~~~~mt~d~~~~~ie~ 148 (423)
T TIGR00190 75 DIEEEVEKALIAIKYGADTVMDLS-TGG---DLDEIRKAIL--DAVPVPVGTVPIYQAAEKVHGAVEDMDEDDMFRAIEK 148 (423)
T ss_pred CHHHHHHHHHHHHHcCCCeEeecc-CCC---CHHHHHHHHH--HcCCCCccCccHHHHHHHhcCChhhCCHHHHHHHHHH
Confidence 45555566899999997544 555 333 3333444432 12222232211000000 0012345677888777776
Q ss_pred HHHHcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCCHHHHHHHh
Q 025707 118 SLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAH 174 (249)
Q Consensus 118 sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~ 174 (249)
..+ |-+|++-+|.- -..+.++.+++.|+ ..|+-+-.-+-+..++
T Consensus 149 qa~----dGVDfmTiH~G-------i~~~~~~~~~~~~R--~~giVSRGGs~~~~WM 192 (423)
T TIGR00190 149 QAK----DGVDFMTIHAG-------VLLEYVERLKRSGR--ITGIVSRGGAILAAWM 192 (423)
T ss_pred HHH----hCCCEEEEccc-------hhHHHHHHHHhCCC--ccCeecCcHHHHHHHH
Confidence 665 46688999985 25677888999885 5565554444444443
No 72
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=71.74 E-value=55 Score=29.47 Aligned_cols=46 Identities=15% Similarity=0.212 Sum_probs=27.1
Q ss_pred CHHHHHHHhhcC--CceEEeeecCcccc----chhhhHHHHHHHhCCcEEec
Q 025707 166 SPDTIRRAHAVH--PITAVQLEWSLWAR----DIENEIVPLCRELGIGIVPY 211 (249)
Q Consensus 166 ~~~~l~~~~~~~--~~~~~q~~~n~~~~----~~~~~~~~~~~~~gi~v~a~ 211 (249)
+.+.++++.... +.-+.-.|.|+.-+ .....+.+.|++|||.||+=
T Consensus 146 D~~~LE~~~~~~~vkl~iLCnPHNP~Grvwt~eeL~~i~elc~kh~v~VISD 197 (388)
T COG1168 146 DFDALEKAFVDERVKLFILCNPHNPTGRVWTKEELRKIAELCLRHGVRVISD 197 (388)
T ss_pred cHHHHHHHHhcCCccEEEEeCCCCCCCccccHHHHHHHHHHHHHcCCEEEee
Confidence 445555554443 22233334444332 22378999999999999973
No 73
>PF13378 MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FCP_B 3P0W_D 3VFC_A 3VDG_A 3FJ4_B 3CT2_B 3DGB_A 3V3W_A 3V4B_A 3NO1_E ....
Probab=71.66 E-value=8.7 Score=27.70 Aligned_cols=54 Identities=22% Similarity=0.215 Sum_probs=40.6
Q ss_pred CCCCHHHHHHHhhcCCceEEeeecCcccc-chhhhHHHHHHHhCCcEEecccCccc
Q 025707 163 SEASPDTIRRAHAVHPITAVQLEWSLWAR-DIENEIVPLCRELGIGIVPYCPLGRG 217 (249)
Q Consensus 163 s~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~~~~~~~~~gi~v~a~spl~~G 217 (249)
+.++...+.++++...++++|+...-.-. .....+.+.|+++|+.+...+. ..+
T Consensus 3 ~~~~~~~~~~li~~~a~d~~~~~~~~~GGit~~~~i~~~A~~~gi~~~~h~~-~~~ 57 (111)
T PF13378_consen 3 SLFSLHDFRRLIEAGAVDIVQIDPTRCGGITEALRIAALAEAHGIPVMPHSM-ESG 57 (111)
T ss_dssp TSSSHHHHHHHHHTTSCSEEEEBHHHHTSHHHHHHHHHHHHHTT-EEEEBSS-SSH
T ss_pred CCCCHHHHHHHHHcCCCCEEEeCchhcCCHHHHHHHHHHHHHhCCCEEecCC-CCc
Confidence 56788889999998888999997554322 1127899999999999999986 443
No 74
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=71.51 E-value=39 Score=30.18 Aligned_cols=27 Identities=19% Similarity=0.240 Sum_probs=19.4
Q ss_pred CCHHHHHHHHHHHHHHcCCCceeEEEee
Q 025707 106 GTPEYVRSCCEASLRRLDVEYIDLYYQH 133 (249)
Q Consensus 106 ~s~~~i~~~~~~sL~~Lg~d~iDl~~lh 133 (249)
.+.+.+++.++..+ .++.+++.++.+.
T Consensus 172 qt~~~~~~tl~~~~-~l~~~~i~~y~l~ 198 (375)
T PRK05628 172 ESDDDWRASLDAAL-EAGVDHVSAYALI 198 (375)
T ss_pred CCHHHHHHHHHHHH-hcCCCEEEeeeee
Confidence 56777777777554 5888888887775
No 75
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=71.25 E-value=61 Score=27.23 Aligned_cols=91 Identities=18% Similarity=0.147 Sum_probs=52.4
Q ss_pred HHHHHHHcCCCceeEEEeecCCCCCCHH-HHHHHHHHHHHcCCeeEEEcCC-CCHHHHHHHhhcCCceEEeeecCccccc
Q 025707 115 CEASLRRLDVEYIDLYYQHRVDTSVPIE-ETIGEMKKLVEEGKIKYIGLSE-ASPDTIRRAHAVHPITAVQLEWSLWARD 192 (249)
Q Consensus 115 ~~~sL~~Lg~d~iDl~~lh~~~~~~~~~-~~~~~l~~l~~~G~ir~iGvs~-~~~~~l~~~~~~~~~~~~q~~~n~~~~~ 192 (249)
+-+-|+.+|+ |.+.+|..+..-... --++.+.++++.-.+.-|.... .+++.+.++.....++.+.+---+....
T Consensus 160 ~~~~l~~~G~---~~iivt~i~~~g~~~g~~~~~~~~i~~~~~ipvia~GGi~s~~di~~~~~~g~~dgv~~g~a~~~~~ 236 (254)
T TIGR00735 160 WAKEVEKLGA---GEILLTSMDKDGTKSGYDLELTKAVSEAVKIPVIASGGAGKPEHFYEAFTKGKADAALAASVFHYRE 236 (254)
T ss_pred HHHHHHHcCC---CEEEEeCcCcccCCCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCcceeeEhHHHhCCC
Confidence 3344456776 456666654421111 1245556666655566665553 4667888888776566655532222222
Q ss_pred h-hhhHHHHHHHhCCcE
Q 025707 193 I-ENEIVPLCRELGIGI 208 (249)
Q Consensus 193 ~-~~~~~~~~~~~gi~v 208 (249)
. ..++.+.|+++||.+
T Consensus 237 ~~~~~~~~~~~~~gi~~ 253 (254)
T TIGR00735 237 ITIGEVKEYLAERGIPV 253 (254)
T ss_pred CCHHHHHHHHHHCCCcc
Confidence 2 278899999999875
No 76
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=70.49 E-value=23 Score=31.25 Aligned_cols=148 Identities=18% Similarity=0.200 Sum_probs=80.3
Q ss_pred ccCCceecCCCCcccCcceeecccccCCCCCCCCHHHHHHHHHHHHHcCCCe--EeCCCCcCCCchHHHHHHHHHcCCCC
Q 025707 7 LQVPRVKLGTQGLEVSKLGYGCMSLSGCYNSPLSEEDGISIIKHAFSKGITF--FDTADKYGPYTNEILLGKALKELPRE 84 (249)
Q Consensus 7 ~~m~~~~lg~~g~~vs~lg~Gt~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~--~Dta~~Yg~g~se~~lg~~l~~~~r~ 84 (249)
++|++..++ .|..|-..|+|. +|. =.++.|-..|.+. ||+++. ..|+ +++...-|
T Consensus 172 spLk~~g~~-pG~~vgI~GlGG--LGh------------~aVq~AKAMG~rV~vis~~~~----kkee----a~~~LGAd 228 (360)
T KOG0023|consen 172 SPLKRSGLG-PGKWVGIVGLGG--LGH------------MAVQYAKAMGMRVTVISTSSK----KKEE----AIKSLGAD 228 (360)
T ss_pred ehhHHcCCC-CCcEEEEecCcc--cch------------HHHHHHHHhCcEEEEEeCCch----hHHH----HHHhcCcc
Confidence 356666675 677777777776 443 2355666666655 565531 1333 34444566
Q ss_pred CeEEEecccccccCCcccccCCCHHHHHHHHHHHHHHcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCCeeEEEcCC
Q 025707 85 NIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSE 164 (249)
Q Consensus 85 ~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~ 164 (249)
.++++++ +++ +.+++..+++ .+++.+--+ ...+ .-..+.-+|..|++-.+|+-.
T Consensus 229 ~fv~~~~---------------d~d-~~~~~~~~~d-g~~~~v~~~------a~~~---~~~~~~~lk~~Gt~V~vg~p~ 282 (360)
T KOG0023|consen 229 VFVDSTE---------------DPD-IMKAIMKTTD-GGIDTVSNL------AEHA---LEPLLGLLKVNGTLVLVGLPE 282 (360)
T ss_pred eeEEecC---------------CHH-HHHHHHHhhc-Ccceeeeec------cccc---hHHHHHHhhcCCEEEEEeCcC
Confidence 6666665 233 3344444433 222222222 2222 233456788999999999977
Q ss_pred CCHHHHHHHhhcCCc--eEEeeecCccccc-hhhhHHHHHHHhCCcE
Q 025707 165 ASPDTIRRAHAVHPI--TAVQLEWSLWARD-IENEIVPLCRELGIGI 208 (249)
Q Consensus 165 ~~~~~l~~~~~~~~~--~~~q~~~n~~~~~-~~~~~~~~~~~~gi~v 208 (249)
.... +..+++ --..+--|..-.. ..+++++||.+++|.+
T Consensus 283 ~~~~-----~~~~~lil~~~~I~GS~vG~~ket~E~Ldf~a~~~ik~ 324 (360)
T KOG0023|consen 283 KPLK-----LDTFPLILGRKSIKGSIVGSRKETQEALDFVARGLIKS 324 (360)
T ss_pred Cccc-----ccchhhhcccEEEEeeccccHHHHHHHHHHHHcCCCcC
Confidence 5321 111221 1233344444322 2389999999998763
No 77
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=69.91 E-value=69 Score=27.26 Aligned_cols=104 Identities=13% Similarity=0.175 Sum_probs=59.8
Q ss_pred CCCHHHHHHHHHHHHHHcCCCceeEEEeecCCCCC------CHHHHHHHHHHHHHcCCeeEEEcCCCC---HHHHHHHhh
Q 025707 105 KGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSV------PIEETIGEMKKLVEEGKIKYIGLSEAS---PDTIRRAHA 175 (249)
Q Consensus 105 ~~s~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~------~~~~~~~~l~~l~~~G~ir~iGvs~~~---~~~l~~~~~ 175 (249)
.++.+.. ..+-+.|.++|+++|++-+........ .-.+.++.+.++.+ +..+..+++... .+.+..+.+
T Consensus 16 ~f~~~~~-~~ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~l~~a~~ 93 (266)
T cd07944 16 DFGDEFV-KAIYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSK-GNTKIAVMVDYGNDDIDLLEPASG 93 (266)
T ss_pred cCCHHHH-HHHHHHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhc-cCCEEEEEECCCCCCHHHHHHHhc
Confidence 3555544 556667999999999998775533210 11456666665543 245555655443 455555544
Q ss_pred cCCceEEeeecCccccchhhhHHHHHHHhCCcEEec
Q 025707 176 VHPITAVQLEWSLWARDIENEIVPLCRELGIGIVPY 211 (249)
Q Consensus 176 ~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~ 211 (249)
. .++.+.+.+..-.-....+.+++++++|+.|...
T Consensus 94 ~-gv~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~ 128 (266)
T cd07944 94 S-VVDMIRVAFHKHEFDEALPLIKAIKEKGYEVFFN 128 (266)
T ss_pred C-CcCEEEEecccccHHHHHHHHHHHHHCCCeEEEE
Confidence 3 3455444333322222377888999999876644
No 78
>PRK14463 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=69.08 E-value=84 Score=27.99 Aligned_cols=94 Identities=13% Similarity=0.166 Sum_probs=61.2
Q ss_pred EEeecCCCC-----------CCHHHHHHHHHHHHHcC----CeeEEEcC--CCCHHHHHHHhhc---CCceEEeeecCcc
Q 025707 130 YYQHRVDTS-----------VPIEETIGEMKKLVEEG----KIKYIGLS--EASPDTIRRAHAV---HPITAVQLEWSLW 189 (249)
Q Consensus 130 ~~lh~~~~~-----------~~~~~~~~~l~~l~~~G----~ir~iGvs--~~~~~~l~~~~~~---~~~~~~q~~~n~~ 189 (249)
+-+|.+++. ..++++++++.++...+ +++++=+. |.+.+.+.++.+. .+..++-++||+.
T Consensus 211 iSL~a~~~e~r~~I~pink~~~l~~l~~a~~~~~~~~~~~v~ieyvLI~GvNDs~e~~~~L~~ll~~l~~~vnlIPyn~~ 290 (349)
T PRK14463 211 VSLNATTDEVRDRIMPVNRRYPLAELLAACKAFPLPGRRKITIEYVMIRGLNDSLEDAKRLVRLLSDIPSKVNLIPFNEH 290 (349)
T ss_pred EeCCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhccCceEEEEecCCC
Confidence 668888653 23577888887776644 33455444 3444665555443 4567777899986
Q ss_pred ccc----h----hhhHHHHHHHhCCcEEecccC------cccccCCCC
Q 025707 190 ARD----I----ENEIVPLCRELGIGIVPYCPL------GRGFFGGKA 223 (249)
Q Consensus 190 ~~~----~----~~~~~~~~~~~gi~v~a~spl------~~G~l~g~~ 223 (249)
... + -..+.+.++++||.+....+. ++|.|..+.
T Consensus 291 ~~~~~~~ps~e~i~~f~~~L~~~gi~v~vR~~~G~di~aaCGqL~~~~ 338 (349)
T PRK14463 291 EGCDFRSPTQEAIDRFHKYLLDKHVTVITRSSRGSDISAACGQLKGKL 338 (349)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCceEEEeCCCCcchhhccCcccccc
Confidence 421 1 155677788999999998776 567777663
No 79
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=68.13 E-value=59 Score=27.45 Aligned_cols=103 Identities=16% Similarity=0.112 Sum_probs=66.7
Q ss_pred CCHHHHHHHHHHHHHHcCCCceeEEEee-cCCC-----CCCHHHHHHHHHHHHHcCCeeEEEcCCCCHHHHHHHhhcCCc
Q 025707 106 GTPEYVRSCCEASLRRLDVEYIDLYYQH-RVDT-----SVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAVHPI 179 (249)
Q Consensus 106 ~s~~~i~~~~~~sL~~Lg~d~iDl~~lh-~~~~-----~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~ 179 (249)
.+++.+.+..++.+ .-|.|.||+-.-- +|.. ....+.+...++.+++.-.+ -|.+-+++++.++++++....
T Consensus 21 ~~~~~~~~~a~~~~-~~GAdiIDvG~~st~p~~~~~~~~~E~~rl~~~v~~l~~~~~~-piSIDT~~~~v~~aaL~~g~~ 98 (258)
T cd00423 21 LSLDKALEHARRMV-EEGADIIDIGGESTRPGAEPVSVEEELERVIPVLRALAGEPDV-PISVDTFNAEVAEAALKAGAD 98 (258)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhcCCC-eEEEeCCcHHHHHHHHHhCCC
Confidence 45666766666554 6789999998543 3432 12233455666666655233 389999999999999987522
Q ss_pred eEEeeecCccccchhhhHHHHHHHhCCcEEecccC
Q 025707 180 TAVQLEWSLWARDIENEIVPLCRELGIGIVPYCPL 214 (249)
Q Consensus 180 ~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~spl 214 (249)
+-+..+.... ..++++.+++.|.+++.+..-
T Consensus 99 --iINdis~~~~--~~~~~~l~~~~~~~vV~m~~~ 129 (258)
T cd00423 99 --IINDVSGGRG--DPEMAPLAAEYGAPVVLMHMD 129 (258)
T ss_pred --EEEeCCCCCC--ChHHHHHHHHcCCCEEEECcC
Confidence 2233333321 157899999999999987643
No 80
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=68.08 E-value=1e+02 Score=28.65 Aligned_cols=153 Identities=12% Similarity=0.054 Sum_probs=84.0
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCCCCcCCCchHHHHHHHHHc-CCCCCeEEEecccccccCCcccccCCCHHHHHHHHHH
Q 025707 39 LSEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKE-LPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEA 117 (249)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~g~se~~lg~~l~~-~~r~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~~~~ 117 (249)
++++.....++.|.+.||..|=....-.+-++-+..-++.++ ...-++.|+-... +.++.+.+.+.+++
T Consensus 102 ypddvv~~fv~~a~~~Gidi~Rifd~lnd~~n~~~ai~~ak~~G~~~~~~i~yt~s----------p~~t~~y~~~~a~~ 171 (468)
T PRK12581 102 YADDIVDKFISLSAQNGIDVFRIFDALNDPRNIQQALRAVKKTGKEAQLCIAYTTS----------PVHTLNYYLSLVKE 171 (468)
T ss_pred CcchHHHHHHHHHHHCCCCEEEEcccCCCHHHHHHHHHHHHHcCCEEEEEEEEEeC----------CcCcHHHHHHHHHH
Confidence 467888889999999999888665544432333333334443 2111233333221 23556667666665
Q ss_pred HHHHcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCCHHHHH-----HHhhcCCceEEeeecCccccc
Q 025707 118 SLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIR-----RAHAVHPITAVQLEWSLWARD 192 (249)
Q Consensus 118 sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~-----~~~~~~~~~~~q~~~n~~~~~ 192 (249)
+..+|++ .+.+-..-....-.++.+.+..+++... .-||+=.|+...+. .+++ .+.+.+....+.+-..
T Consensus 172 -l~~~Gad---~I~IkDtaG~l~P~~v~~Lv~alk~~~~-~pi~~H~Hnt~GlA~An~laAie-AGad~vD~ai~g~g~g 245 (468)
T PRK12581 172 -LVEMGAD---SICIKDMAGILTPKAAKELVSGIKAMTN-LPLIVHTHATSGISQMTYLAAVE-AGADRIDTALSPFSEG 245 (468)
T ss_pred -HHHcCCC---EEEECCCCCCcCHHHHHHHHHHHHhccC-CeEEEEeCCCCccHHHHHHHHHH-cCCCEEEeeccccCCC
Confidence 4567874 4666555455555667777777776543 35788766553222 2222 3455555555544332
Q ss_pred h----hhhHHHHHHHhCCc
Q 025707 193 I----ENEIVPLCRELGIG 207 (249)
Q Consensus 193 ~----~~~~~~~~~~~gi~ 207 (249)
. .+.++..++..|+.
T Consensus 246 agN~~tE~lv~~L~~~g~~ 264 (468)
T PRK12581 246 TSQPATESMYLALKEAGYD 264 (468)
T ss_pred cCChhHHHHHHHHHhcCCC
Confidence 1 15566666655443
No 81
>cd00740 MeTr MeTr subgroup of pterin binding enzymes. This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=68.03 E-value=74 Score=26.90 Aligned_cols=109 Identities=12% Similarity=0.014 Sum_probs=64.3
Q ss_pred CCCHHHHHHHHHHHHHHcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCCHHHHHHHhhcCCceEEee
Q 025707 105 KGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAVHPITAVQL 184 (249)
Q Consensus 105 ~~s~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~ 184 (249)
..+++.+.+.+.+.++ -|.|+||+-. .|......++.-+.+..+.+.-. .-|.+-+++++.++++++...=...-+
T Consensus 22 ~~~~d~~~~~A~~~~~-~GAdiIDIG~--~~~~~~~~ee~~r~v~~i~~~~~-~piSIDT~~~~v~e~aL~~~~G~~iIN 97 (252)
T cd00740 22 AEDYDEALDVARQQVE-GGAQILDLNV--DYGGLDGVSAMKWLLNLLATEPT-VPLMLDSTNWEVIEAGLKCCQGKCVVN 97 (252)
T ss_pred cCCHHHHHHHHHHHHH-CCCCEEEECC--CCCCCCHHHHHHHHHHHHHHhcC-CcEEeeCCcHHHHHHHHhhCCCCcEEE
Confidence 3567778777777765 5999999875 23322222222222222222212 247888999999999988621122333
Q ss_pred ecCcccc-chhhhHHHHHHHhCCcEEecccCccc
Q 025707 185 EWSLWAR-DIENEIVPLCRELGIGIVPYCPLGRG 217 (249)
Q Consensus 185 ~~n~~~~-~~~~~~~~~~~~~gi~v~a~spl~~G 217 (249)
+.+.... ....++++.+++.|..++.+..-..|
T Consensus 98 sIs~~~~~e~~~~~~~~~~~~~~~vV~m~~~~~g 131 (252)
T cd00740 98 SINLEDGEERFLKVARLAKEHGAAVVVLAFDEQG 131 (252)
T ss_pred eCCCCCCccccHHHHHHHHHhCCCEEEeccCCCC
Confidence 3343321 11267889999999999987653333
No 82
>PRK14017 galactonate dehydratase; Provisional
Probab=67.73 E-value=92 Score=27.91 Aligned_cols=154 Identities=12% Similarity=0.122 Sum_probs=93.4
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCCCC-----cCCC---chHHHHHHHHHcCCCCCeEEEecccccccCCcccccCCCHHHH
Q 025707 40 SEEDGISIIKHAFSKGITFFDTADK-----YGPY---TNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYV 111 (249)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~Dta~~-----Yg~g---~se~~lg~~l~~~~r~~~~I~tK~~~~~~~~~~~~~~~s~~~i 111 (249)
+.++..+.++.+.+.|++.|=.--. ++.. ......-+++++.-.+++.|.--... .++.+..
T Consensus 124 ~~~~~~~~a~~~~~~Gf~~~KiKv~~~~~~~~~~~~~~~d~~~i~avr~~~g~~~~l~vDaN~----------~w~~~~A 193 (382)
T PRK14017 124 RPADVAEAARARVERGFTAVKMNGTEELQYIDSPRKVDAAVARVAAVREAVGPEIGIGVDFHG----------RVHKPMA 193 (382)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCcCCccccccHHHHHHHHHHHHHHHHHhCCCCeEEEECCC----------CCCHHHH
Confidence 4566778888888999999976421 1100 11222233444322234444332211 2444432
Q ss_pred HHHHHHHHHHcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCCee-EEEcCCCCHHHHHHHhhcCCceEEeeecCccc
Q 025707 112 RSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIK-YIGLSEASPDTIRRAHAVHPITAVQLEWSLWA 190 (249)
Q Consensus 112 ~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~ 190 (249)
.+.++.|. .+++.++..|-...+ ++.+.+|++...+. ..|=|.++...+.++++...++++|+..+-.-
T Consensus 194 ----~~~~~~l~--~~~~~~iEeP~~~~d----~~~~~~L~~~~~~pIa~dEs~~~~~~~~~li~~~a~d~v~~d~~~~G 263 (382)
T PRK14017 194 ----KVLAKELE--PYRPMFIEEPVLPEN----AEALPEIAAQTSIPIATGERLFSRWDFKRVLEAGGVDIIQPDLSHAG 263 (382)
T ss_pred ----HHHHHhhc--ccCCCeEECCCCcCC----HHHHHHHHhcCCCCEEeCCccCCHHHHHHHHHcCCCCeEecCccccC
Confidence 33333442 245566666643333 46677888776655 56777889999999998888899999866543
Q ss_pred c-chhhhHHHHHHHhCCcEEeccc
Q 025707 191 R-DIENEIVPLCRELGIGIVPYCP 213 (249)
Q Consensus 191 ~-~~~~~~~~~~~~~gi~v~a~sp 213 (249)
. ....++.+.|+++|+.++..+.
T Consensus 264 Git~~~~ia~~A~~~gi~~~~h~~ 287 (382)
T PRK14017 264 GITECRKIAAMAEAYDVALAPHCP 287 (382)
T ss_pred CHHHHHHHHHHHHHcCCeEeecCC
Confidence 2 1237899999999999997764
No 83
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=67.69 E-value=48 Score=27.27 Aligned_cols=72 Identities=17% Similarity=0.182 Sum_probs=48.0
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCCCCcCC-CchH---HHHHHHHHcCCCCCeEEEecccccccCCcccccCCCHHHHHHHH
Q 025707 40 SEEDGISIIKHAFSKGITFFDTADKYGP-YTNE---ILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCC 115 (249)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~-g~se---~~lg~~l~~~~r~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~~ 115 (249)
+.++...+.+.|.++|..|+=|+-.|+. |-+. +.+.+.++ ++ +..|..-.. .+.+...+-+
T Consensus 130 ~~~ei~~a~~ia~eaGADfvKTsTGf~~~gat~~dv~~m~~~v~----~~--v~IKaaGGi---------rt~~~a~~~i 194 (211)
T TIGR00126 130 TDEEIRKACEICIDAGADFVKTSTGFGAGGATVEDVRLMRNTVG----DT--IGVKASGGV---------RTAEDAIAMI 194 (211)
T ss_pred CHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCHHHHHHHHHHhc----cC--CeEEEeCCC---------CCHHHHHHHH
Confidence 5678889999999999999999988863 3222 23333332 22 233332111 2577788888
Q ss_pred HHHHHHcCCCc
Q 025707 116 EASLRRLDVEY 126 (249)
Q Consensus 116 ~~sL~~Lg~d~ 126 (249)
+.--.|+|++.
T Consensus 195 ~aGa~riGts~ 205 (211)
T TIGR00126 195 EAGASRIGASA 205 (211)
T ss_pred HHhhHHhCcch
Confidence 88889999864
No 84
>cd03327 MR_like_2 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=67.23 E-value=89 Score=27.53 Aligned_cols=153 Identities=16% Similarity=0.147 Sum_probs=90.8
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCCCCcCC--C----chHHHHHHHHHcCCCCCeEEEecccccccCCcccccCCCHHHHHH
Q 025707 40 SEEDGISIIKHAFSKGITFFDTADKYGP--Y----TNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRS 113 (249)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~--g----~se~~lg~~l~~~~r~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~ 113 (249)
+.++..+.++.+++.|++.|=.--..+. + ......-+++++.-.+++-|.--.. ..++++...
T Consensus 120 ~~~~~~~~a~~~~~~Gf~~~Kikvg~~~~~~~~~~~~d~~~v~avr~~~g~~~~l~vDan----------~~~~~~~A~- 188 (341)
T cd03327 120 DLDELPDEAKEYLKEGYRGMKMRFGYGPSDGHAGLRKNVELVRAIREAVGYDVDLMLDCY----------MSWNLNYAI- 188 (341)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCCCCcchHHHHHHHHHHHHHHHHhCCCCcEEEECC----------CCCCHHHHH-
Confidence 5566777888888999999865422111 0 0112222334432222333322211 124444332
Q ss_pred HHHHHHHHcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCCee-EEEcCCCCHHHHHHHhhcCCceEEeeecCcccc-
Q 025707 114 CCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIK-YIGLSEASPDTIRRAHAVHPITAVQLEWSLWAR- 191 (249)
Q Consensus 114 ~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~- 191 (249)
+.+++|. ..++.++..|-... -++.+.+|++...|. ..|=+.++...+.++++...++++|...+-.-.
T Consensus 189 ---~~~~~l~--~~~~~~iEeP~~~~----d~~~~~~l~~~~~~pIa~gE~~~~~~~~~~~i~~~a~d~i~~d~~~~GGi 259 (341)
T cd03327 189 ---KMARALE--KYELRWIEEPLIPD----DIEGYAELKKATGIPISTGEHEYTVYGFKRLLEGRAVDILQPDVNWVGGI 259 (341)
T ss_pred ---HHHHHhh--hcCCccccCCCCcc----CHHHHHHHHhcCCCCeEeccCccCHHHHHHHHHcCCCCEEecCccccCCH
Confidence 2333332 23556666554333 356677787776666 666677899999999988889999997665432
Q ss_pred chhhhHHHHHHHhCCcEEecc
Q 025707 192 DIENEIVPLCRELGIGIVPYC 212 (249)
Q Consensus 192 ~~~~~~~~~~~~~gi~v~a~s 212 (249)
....++.+.|+++|+.++..+
T Consensus 260 t~~~~i~~~A~~~g~~~~~h~ 280 (341)
T cd03327 260 TELKKIAALAEAYGVPVVPHA 280 (341)
T ss_pred HHHHHHHHHHHHcCCeecccc
Confidence 112789999999999988764
No 85
>PF00697 PRAI: N-(5'phosphoribosyl)anthranilate (PRA) isomerase; InterPro: IPR001240 Indole-3-glycerol phosphate synthase (IGPS) (see IPR001468 from INTERPRO) catalyzes the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyzes N-(5-phosphoribosyl)anthranilate isomerase (PRAI) activity, the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (GATase) N-terminal domain (see IPR000991 from INTERPRO). Phosphoribosylanthranilate isomerase (PRAI) is monomeric and labile in most mesophilic microorganisms, but dimeric and stable in the hyperthermophile Thermotoga maritima (tPRAI) []. The comparison to the known 2.0 A structure of PRAI from Escherichia coli (ePRAI) shows that tPRAI has the complete TIM- or (beta alp ha)8-barrel fold, whereas helix alpha5 in ePRAI is replaced by a loop. The subunits of tPRAI associate via the N-terminal faces of their central beta-barrels. Two long, symmetry-related loops that protrude reciprocally into cavities of the other subunit provide for multiple hydrophobic interactions. Moreover, the side chains of the N-terminal methionines and the C-terminal leucines of both subunits are immobilized in a hydrophobic cluster, and the number of salt bridges is increased in tPRAI. These features appear to be mainly responsible for the high thermostability of tPRAI []. ; GO: 0004640 phosphoribosylanthranilate isomerase activity, 0006568 tryptophan metabolic process; PDB: 1V5X_A 1PII_A 1JCM_P 2KZH_A 1LBM_A 1DL3_A 1NSJ_A.
Probab=66.93 E-value=22 Score=28.71 Aligned_cols=65 Identities=20% Similarity=0.266 Sum_probs=39.1
Q ss_pred HHHHcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCCeeEEEcC-CCCHHHHHHHhhcCCceEEeeec
Q 025707 118 SLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLS-EASPDTIRRAHAVHPITAVQLEW 186 (249)
Q Consensus 118 sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs-~~~~~~l~~~~~~~~~~~~q~~~ 186 (249)
.+..+|.||+=+.+.......... +.+.++.+.-..+.+||. |.+++.+.+.....+++++|+.-
T Consensus 14 ~~~~~g~d~~Gfi~~~~S~R~v~~----~~a~~l~~~~~~~~VgVf~~~~~~~I~~~~~~~~ld~vQLHG 79 (197)
T PF00697_consen 14 LAAELGADYLGFIFYPKSPRYVSP----DQARELVSAVPPKIVGVFVNQSPEEILEIVEELGLDVVQLHG 79 (197)
T ss_dssp HHHHHTSSEEEEE--TTCTTB--H----HHHHHHHCCSSSSEEEEESSS-HHHHHHHHHHCTESEEEE-S
T ss_pred HHHHcCCCEEeeecCCCCCCccCH----HHHHHHHHhcCCCEEEEEcCCCHHHHHHHHHHcCCCEEEECC
Confidence 455789999988754332222333 333444444344478885 55778888888889999999853
No 86
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=66.87 E-value=37 Score=31.31 Aligned_cols=60 Identities=20% Similarity=0.263 Sum_probs=38.3
Q ss_pred CCHHHHHHHHHHHHHHcCCCceeEEEe-ecCC----------CCC-CHHH---H-HHHHHHHHHcCCeeEEEcCCCCH
Q 025707 106 GTPEYVRSCCEASLRRLDVEYIDLYYQ-HRVD----------TSV-PIEE---T-IGEMKKLVEEGKIKYIGLSEASP 167 (249)
Q Consensus 106 ~s~~~i~~~~~~sL~~Lg~d~iDl~~l-h~~~----------~~~-~~~~---~-~~~l~~l~~~G~ir~iGvs~~~~ 167 (249)
.+.+.+.+.++..++ |+.+++.++.+ +.|. ... ..++ . -.+.+.|.+.|. ..+++++|..
T Consensus 215 qt~e~~~~tl~~~~~-l~~~~is~y~L~~~p~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~L~~~Gy-~~~~~~~fa~ 290 (455)
T TIGR00538 215 QTKESFAKTLEKVAE-LNPDRLAVFNYAHVPWVKPAQRKIPEAALPSAEEKLDILQETIAFLTEAGY-QFIGMDHFAK 290 (455)
T ss_pred CCHHHHHHHHHHHHh-cCCCEEEEecCccccchhHHHhcccccCCCCHHHHHHHHHHHHHHHHHCCC-EEEeccceeC
Confidence 578888888886654 89999999977 2221 001 1222 2 234555667776 5699999875
No 87
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=66.73 E-value=18 Score=32.18 Aligned_cols=94 Identities=10% Similarity=-0.022 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHcCCCceeEEEeecCCCCC---CHHHHHHHHHHHHHcCCeeEEEcCCCCHHHHHHHhhcCCceEEeee--
Q 025707 111 VRSCCEASLRRLDVEYIDLYYQHRVDTSV---PIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAVHPITAVQLE-- 185 (249)
Q Consensus 111 i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~---~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~~-- 185 (249)
-+-.+-+.|.++|+++|++-..-+|.... +.+++++.+.+ ...++..++. .+...++.+.+.. .+.+.+.
T Consensus 69 ~Ki~ia~~L~~~GV~~IEvGs~vspk~vPqmad~~ev~~~i~~---~~~~~~~~l~-~n~~die~A~~~g-~~~v~i~~s 143 (347)
T PLN02746 69 VKVELIQRLVSSGLPVVEATSFVSPKWVPQLADAKDVMAAVRN---LEGARFPVLT-PNLKGFEAAIAAG-AKEVAVFAS 143 (347)
T ss_pred HHHHHHHHHHHcCCCEEEECCCcCcccccccccHHHHHHHHHh---ccCCceeEEc-CCHHHHHHHHHcC-cCEEEEEEe
Confidence 34556677999999999998665553222 33445555543 2335555554 5888898888762 2223222
Q ss_pred cCccc------cc---h---hhhHHHHHHHhCCcEE
Q 025707 186 WSLWA------RD---I---ENEIVPLCRELGIGIV 209 (249)
Q Consensus 186 ~n~~~------~~---~---~~~~~~~~~~~gi~v~ 209 (249)
.|..+ .. . ..+++++++++|+.|.
T Consensus 144 ~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~ 179 (347)
T PLN02746 144 ASESFSKSNINCSIEESLVRYREVALAAKKHSIPVR 179 (347)
T ss_pred cCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEE
Confidence 22111 11 1 1478999999999885
No 88
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=66.61 E-value=75 Score=26.42 Aligned_cols=160 Identities=14% Similarity=0.143 Sum_probs=98.3
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCCCCcCCCchHHHHHHHHHcCCCCCeEEEecccccccCCcccccCCCHHHHHHHHHHH
Q 025707 39 LSEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEAS 118 (249)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~g~se~~lg~~l~~~~r~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~~~~s 118 (249)
.+..+....+...+..++.+...+---| -+.+.+ +.+. ....+..+.|++.-.. ....+.+.++..+.+.
T Consensus 10 sPR~Dv~p~l~~~l~~~v~i~e~G~LDg--ls~~eI-~~~a-P~~ge~vLvTrL~DG~------~V~ls~~~v~~~lq~~ 79 (221)
T PF07302_consen 10 SPRTDVTPELTEILGEGVEIVEAGALDG--LSREEI-AALA-PEPGEYVLVTRLRDGT------QVVLSKKKVEPRLQAC 79 (221)
T ss_pred CCCchhHHHHHHHcCCCceEEEeccCCC--CCHHHH-HHhC-CCCCCceeEEEeCCCC------EEEEEHHHHHHHHHHH
Confidence 3677888999999988988887665544 444445 6665 3455677778764221 3346889999999999
Q ss_pred HHHcCCCceeEEEeecCCCC------C---CHHHHHHHHHHHHHcCCeeEEEcCCCCHHHHHHHhhc---CCceEEeeec
Q 025707 119 LRRLDVEYIDLYYQHRVDTS------V---PIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAV---HPITAVQLEW 186 (249)
Q Consensus 119 L~~Lg~d~iDl~~lh~~~~~------~---~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~---~~~~~~q~~~ 186 (249)
.++|.-+-.|++++-+-..- . .-..++..+-+..-.| +.+||-.-.++++....+. ....+.-...
T Consensus 80 i~~le~~G~d~illlCTG~F~~l~~~~~lleP~ril~~lV~al~~~--~~vGVivP~~eQ~~~~~~kW~~l~~~~~~a~a 157 (221)
T PF07302_consen 80 IAQLEAQGYDVILLLCTGEFPGLTARNPLLEPDRILPPLVAALVGG--HQVGVIVPLPEQIAQQAEKWQPLGNPVVVAAA 157 (221)
T ss_pred HHHHHHCCCCEEEEeccCCCCCCCCCcceeehHHhHHHHHHHhcCC--CeEEEEecCHHHHHHHHHHHHhcCCCeEEEEe
Confidence 99997777788887543221 1 1234555555555555 6888888888877754333 2223333345
Q ss_pred CccccchhhhHHHHHH---HhCCcEEec
Q 025707 187 SLWARDIENEIVPLCR---ELGIGIVPY 211 (249)
Q Consensus 187 n~~~~~~~~~~~~~~~---~~gi~v~a~ 211 (249)
|++... ..++.+.++ ++|..++..
T Consensus 158 sPy~~~-~~~l~~Aa~~L~~~gadlIvL 184 (221)
T PF07302_consen 158 SPYEGD-EEELAAAARELAEQGADLIVL 184 (221)
T ss_pred CCCCCC-HHHHHHHHHHHHhcCCCEEEE
Confidence 555332 234444444 446666543
No 89
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=66.51 E-value=47 Score=30.02 Aligned_cols=60 Identities=13% Similarity=0.033 Sum_probs=39.0
Q ss_pred CCHHHHHHHHHHHHHHcCCCceeEEEeec-CCCC------------CCHHH---H-HHHHHHHHHcCCeeEEEcCCCCH
Q 025707 106 GTPEYVRSCCEASLRRLDVEYIDLYYQHR-VDTS------------VPIEE---T-IGEMKKLVEEGKIKYIGLSEASP 167 (249)
Q Consensus 106 ~s~~~i~~~~~~sL~~Lg~d~iDl~~lh~-~~~~------------~~~~~---~-~~~l~~l~~~G~ir~iGvs~~~~ 167 (249)
.+.+.+++.++..++ |+.+||.++.+.- +... .+.++ . ..+.+.|.+.|..+ +++|||..
T Consensus 174 qt~e~~~~~l~~~~~-l~p~his~y~L~i~~gT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~~Gy~~-yeis~fa~ 250 (390)
T PRK06582 174 QTLKDWQEELKQAMQ-LATSHISLYQLTIEKGTPFYKLFKEGNLILPHSDAAAEMYEWTNHYLESKKYFR-YEISNYAK 250 (390)
T ss_pred CCHHHHHHHHHHHHh-cCCCEEEEecCEEccCChHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHcCCce-eeceeeeC
Confidence 567888899988886 8999999998863 3210 01111 2 23345566777754 78888764
No 90
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=66.40 E-value=58 Score=29.04 Aligned_cols=27 Identities=26% Similarity=0.170 Sum_probs=15.3
Q ss_pred CCHHHHHHHHHHHHHHcCCCceeEEEee
Q 025707 106 GTPEYVRSCCEASLRRLDVEYIDLYYQH 133 (249)
Q Consensus 106 ~s~~~i~~~~~~sL~~Lg~d~iDl~~lh 133 (249)
.+.+.+.+.++..+ .++.+++.++.+.
T Consensus 163 qt~e~~~~~l~~~~-~l~~~~is~y~l~ 189 (374)
T PRK05799 163 QTLEDWKETLEKVV-ELNPEHISCYSLI 189 (374)
T ss_pred CCHHHHHHHHHHHH-hcCCCEEEEeccE
Confidence 34555665555554 3566666666553
No 91
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=66.32 E-value=30 Score=27.97 Aligned_cols=47 Identities=15% Similarity=0.123 Sum_probs=28.7
Q ss_pred HHHHHcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCCHHHH
Q 025707 117 ASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTI 170 (249)
Q Consensus 117 ~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l 170 (249)
+....++ +|.+++|..++ . +.++.+.+......++.+|++++....+
T Consensus 67 ~ia~~~~---~d~Vqlhg~e~---~-~~~~~l~~~~~~~~i~~i~~~~~~~~~~ 113 (203)
T cd00405 67 EIAEELG---LDVVQLHGDES---P-EYCAQLRARLGLPVIKAIRVKDEEDLEK 113 (203)
T ss_pred HHHHhcC---CCEEEECCCCC---H-HHHHHHHhhcCCcEEEEEecCChhhHHH
Confidence 3344554 57799998642 1 2333333333456899999998876544
No 92
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=66.08 E-value=85 Score=26.90 Aligned_cols=152 Identities=13% Similarity=0.124 Sum_probs=91.8
Q ss_pred CHHHHHHHHHHHHHcCCCeEeC---CCC-------cCCCchHHHHHHHHHcCCCC-CeEEEecccccccCCcccccCCCH
Q 025707 40 SEEDGISIIKHAFSKGITFFDT---ADK-------YGPYTNEILLGKALKELPRE-NIQVATKFGFVELGFTSVIVKGTP 108 (249)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~Dt---a~~-------Yg~g~se~~lg~~l~~~~r~-~~~I~tK~~~~~~~~~~~~~~~s~ 108 (249)
+.++..++.+.+.+.|+..||. ++. |+ .+.+.+.+.++...+. ++-|.-|+.+..
T Consensus 100 ~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~--~~~~~~~eiv~~vr~~~~~Pv~vKl~~~~------------ 165 (296)
T cd04740 100 TVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFG--TDPEAVAEIVKAVKKATDVPVIVKLTPNV------------ 165 (296)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCccccc--CCHHHHHHHHHHHHhccCCCEEEEeCCCc------------
Confidence 5788889999999999999986 222 32 3556666666553222 577778875321
Q ss_pred HHHHHHHHHHHHHcCCCceeEEEe------ecCCC-------------CCCHHHHHHHHHHHHHcCCeeEEEcCCC-CHH
Q 025707 109 EYVRSCCEASLRRLDVEYIDLYYQ------HRVDT-------------SVPIEETIGEMKKLVEEGKIKYIGLSEA-SPD 168 (249)
Q Consensus 109 ~~i~~~~~~sL~~Lg~d~iDl~~l------h~~~~-------------~~~~~~~~~~l~~l~~~G~ir~iGvs~~-~~~ 168 (249)
+.+ ..+-+.++..|.|.+++.-. |.... .....-.++.+.++++.=.+.-||.... +++
T Consensus 166 ~~~-~~~a~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~~ipii~~GGI~~~~ 244 (296)
T cd04740 166 TDI-VEIARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAVEIPIIGVGGIASGE 244 (296)
T ss_pred hhH-HHHHHHHHHcCCCEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHhcCCCEEEECCCCCHH
Confidence 112 23345577889888776421 11000 0001225677777777656888898875 778
Q ss_pred HHHHHhhcCCceEEeeecCccc-cc----hhhhHHHHHHHhCCc
Q 025707 169 TIRRAHAVHPITAVQLEWSLWA-RD----IENEIVPLCRELGIG 207 (249)
Q Consensus 169 ~l~~~~~~~~~~~~q~~~n~~~-~~----~~~~~~~~~~~~gi~ 207 (249)
.+.+++.. ..+.+|+-=-++. +. ...++.++.+++|..
T Consensus 245 da~~~l~~-GAd~V~igra~l~~p~~~~~i~~~l~~~~~~~g~~ 287 (296)
T cd04740 245 DALEFLMA-GASAVQVGTANFVDPEAFKEIIEGLEAYLDEEGIK 287 (296)
T ss_pred HHHHHHHc-CCCEEEEchhhhcChHHHHHHHHHHHHHHHHcCCC
Confidence 88888874 4788887322222 21 226677777777743
No 93
>PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=65.84 E-value=58 Score=29.29 Aligned_cols=93 Identities=11% Similarity=0.235 Sum_probs=62.0
Q ss_pred EEEeecCCCC-----------CCHHHHHHHHHHHHHcCCeeEEEc-----C--CCCHHHHHHHhhc---C------CceE
Q 025707 129 LYYQHRVDTS-----------VPIEETIGEMKKLVEEGKIKYIGL-----S--EASPDTIRRAHAV---H------PITA 181 (249)
Q Consensus 129 l~~lh~~~~~-----------~~~~~~~~~l~~l~~~G~ir~iGv-----s--~~~~~~l~~~~~~---~------~~~~ 181 (249)
.+.||.|+++ .+++++++++.+..++.. |.|-+ . |-++++..++.+. . +..+
T Consensus 231 AiSLHA~~~e~R~~lmPin~~ypl~eLl~a~~~y~~~t~-rrit~EYvLi~gvNDs~e~A~~L~~llk~~~~~~~l~~~V 309 (371)
T PRK14461 231 AISLHAPDDALRSELMPVNRRYPIADLMAATRDYIAKTR-RRVSFEYVLLQGKNDHPEQAAALARLLRGEAPPGPLLVHV 309 (371)
T ss_pred EEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhhC-CEEEEEEEEECCCCCCHHHHHHHHHHHcCCccccCCceEE
Confidence 4678999764 367899999988865422 23332 1 5556665555443 4 5678
Q ss_pred EeeecCccccc--------hhhhHHHHHHHhCCcEEecccC------cccccCCC
Q 025707 182 VQLEWSLWARD--------IENEIVPLCRELGIGIVPYCPL------GRGFFGGK 222 (249)
Q Consensus 182 ~q~~~n~~~~~--------~~~~~~~~~~~~gi~v~a~spl------~~G~l~g~ 222 (249)
+-++||+.... .-....+.++++||.+...... ++|.|..+
T Consensus 310 NLIp~Np~~~~~~~~ps~~~i~~F~~~L~~~gi~vtiR~s~G~DI~AACGQL~~~ 364 (371)
T PRK14461 310 NLIPWNPVPGTPLGRSERERVTTFQRILTDYGIPCTVRVERGVEIAAACGQLAGR 364 (371)
T ss_pred EEecCCCCCCCCCCCCCHHHHHHHHHHHHHCCceEEEeCCCCcChhhcCcccccC
Confidence 89999996531 1166777888999999998876 44566544
No 94
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=65.80 E-value=82 Score=26.60 Aligned_cols=104 Identities=16% Similarity=0.162 Sum_probs=57.8
Q ss_pred CCHHHHHHHHHHHHHHcCCCceeEEEeecCCC-----CCCHHHHHHHHHHHHHc-CCeeEEEcC---CCCHHHHHHHhhc
Q 025707 106 GTPEYVRSCCEASLRRLDVEYIDLYYQHRVDT-----SVPIEETIGEMKKLVEE-GKIKYIGLS---EASPDTIRRAHAV 176 (249)
Q Consensus 106 ~s~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~-----~~~~~~~~~~l~~l~~~-G~ir~iGvs---~~~~~~l~~~~~~ 176 (249)
++.+.. ..+-+.|.++|+++|++-+...... .......++.++.+++. +..+...++ ..+...++.+.+.
T Consensus 19 ~~~~~k-~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~~~~~~~e~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~ 97 (263)
T cd07943 19 FTLEQV-RAIARALDAAGVPLIEVGHGDGLGGSSLNYGFAAHTDEEYLEAAAEALKQAKLGVLLLPGIGTVDDLKMAADL 97 (263)
T ss_pred cCHHHH-HHHHHHHHHcCCCEEEeecCCCCCCcccccCCCCCChHHHHHHHHHhccCCEEEEEecCCccCHHHHHHHHHc
Confidence 445544 4455568999999999985422110 00111234555555332 346666654 3345667666654
Q ss_pred CCceEEeeecCccccchhhhHHHHHHHhCCcEEec
Q 025707 177 HPITAVQLEWSLWARDIENEIVPLCRELGIGIVPY 211 (249)
Q Consensus 177 ~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~ 211 (249)
.++.+.+.++.-+.....+.+++++++|+.+...
T Consensus 98 -g~~~iri~~~~s~~~~~~~~i~~ak~~G~~v~~~ 131 (263)
T cd07943 98 -GVDVVRVATHCTEADVSEQHIGAARKLGMDVVGF 131 (263)
T ss_pred -CCCEEEEEechhhHHHHHHHHHHHHHCCCeEEEE
Confidence 4555555433322222377889999999876543
No 95
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=65.25 E-value=87 Score=26.73 Aligned_cols=111 Identities=13% Similarity=0.088 Sum_probs=56.4
Q ss_pred CCCCHHHHHHHHHHHHHcCCCeEeCCCC--------cCCCchHHHHHHHHHcCCCCCeEEEecccccccCCcccccCCCH
Q 025707 37 SPLSEEDGISIIKHAFSKGITFFDTADK--------YGPYTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTP 108 (249)
Q Consensus 37 ~~~~~~~~~~~l~~A~~~Gi~~~Dta~~--------Yg~g~se~~lg~~l~~~~r~~~~I~tK~~~~~~~~~~~~~~~s~ 108 (249)
...+.++..++.....++||..||.... |-....++.+...-+..++.++....+..... ....-|
T Consensus 16 ~~~~~~~~~~ia~~L~~~Gv~~iE~G~~a~~~~~~~~~~~~~~e~i~~~~~~~~~~~l~~~~r~~~~~------~~~~~p 89 (275)
T cd07937 16 TRMRTEDMLPIAEALDEAGFFSLEVWGGATFDVCMRFLNEDPWERLRELRKAMPNTPLQMLLRGQNLV------GYRHYP 89 (275)
T ss_pred eeccHHHHHHHHHHHHHcCCCEEEccCCcchhhhccccCCCHHHHHHHHHHhCCCCceehhccccccc------CccCCC
Confidence 3457888889988888999999998742 11223344454444334555554444321000 000112
Q ss_pred HH-HHHHHHHHHHHcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCCeeE
Q 025707 109 EY-VRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKY 159 (249)
Q Consensus 109 ~~-i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~ 159 (249)
.. .+..++.+. ..|++.+-++. ...+++.+.+..+..++.|+.-.
T Consensus 90 ~~~~~~di~~~~-~~g~~~iri~~-----~~~~~~~~~~~i~~ak~~G~~v~ 135 (275)
T cd07937 90 DDVVELFVEKAA-KNGIDIFRIFD-----ALNDVRNLEVAIKAVKKAGKHVE 135 (275)
T ss_pred cHHHHHHHHHHH-HcCCCEEEEee-----cCChHHHHHHHHHHHHHCCCeEE
Confidence 22 233333332 33555444422 12235666667777777775433
No 96
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=65.02 E-value=54 Score=27.01 Aligned_cols=97 Identities=20% Similarity=0.174 Sum_probs=54.8
Q ss_pred CCHHHHHHHHHHHHHHcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCCHHHHHHHhh---cCCceEE
Q 025707 106 GTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHA---VHPITAV 182 (249)
Q Consensus 106 ~s~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~---~~~~~~~ 182 (249)
++.+.. ..+-+.|.++|+++|++- .|.....-.+.++.+.+.... .+-.+++......++.+.+ ...++.+
T Consensus 11 ~~~~~k-~~i~~~L~~~Gv~~iEvg---~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~g~~~i 84 (237)
T PF00682_consen 11 FSTEEK-LEIAKALDEAGVDYIEVG---FPFASEDDFEQVRRLREALPN--ARLQALCRANEEDIERAVEAAKEAGIDII 84 (237)
T ss_dssp --HHHH-HHHHHHHHHHTTSEEEEE---HCTSSHHHHHHHHHHHHHHHS--SEEEEEEESCHHHHHHHHHHHHHTTSSEE
T ss_pred cCHHHH-HHHHHHHHHhCCCEEEEc---ccccCHHHHHHhhhhhhhhcc--cccceeeeehHHHHHHHHHhhHhccCCEE
Confidence 344444 445567999999999988 332222233445555555555 4444555566666666443 2444444
Q ss_pred eeecCccc--c------------chhhhHHHHHHHhCCcE
Q 025707 183 QLEWSLWA--R------------DIENEIVPLCRELGIGI 208 (249)
Q Consensus 183 q~~~n~~~--~------------~~~~~~~~~~~~~gi~v 208 (249)
.+..+.-+ . ....+.+++++++|..+
T Consensus 85 ~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v 124 (237)
T PF00682_consen 85 RIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEV 124 (237)
T ss_dssp EEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEE
T ss_pred EecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCce
Confidence 44333222 0 11267899999999988
No 97
>PRK15072 bifunctional D-altronate/D-mannonate dehydratase; Provisional
Probab=64.77 E-value=70 Score=29.00 Aligned_cols=83 Identities=7% Similarity=-0.011 Sum_probs=60.3
Q ss_pred eeEEEeecCCCCCCHHHHHHHHHHHHHcCCee-EEEcCCCCHHHHHHHhhcCCceEEeeecCcccc-chhhhHHHHHHHh
Q 025707 127 IDLYYQHRVDTSVPIEETIGEMKKLVEEGKIK-YIGLSEASPDTIRRAHAVHPITAVQLEWSLWAR-DIENEIVPLCREL 204 (249)
Q Consensus 127 iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~~~~~~~~~ 204 (249)
.++.++..|-... -++.+.+|++.-.+. ..|=|.++...++++++...++++|....-.-. ....++.+.|+++
T Consensus 232 ~~l~~iEeP~~~~----d~~~~~~L~~~~~iPIa~dEs~~~~~~~~~li~~~a~dii~~d~~~~GGit~~~kia~lA~~~ 307 (404)
T PRK15072 232 YRLFWLEDPTPAE----NQEAFRLIRQHTTTPLAVGEVFNSIWDCKQLIEEQLIDYIRTTVTHAGGITHLRRIADFAALY 307 (404)
T ss_pred cCCcEEECCCCcc----CHHHHHHHHhcCCCCEEeCcCccCHHHHHHHHHcCCCCEEecCccccCcHHHHHHHHHHHHHc
Confidence 4666676664332 356777888776555 667778899999999998889999987665432 1127899999999
Q ss_pred CCcEEeccc
Q 025707 205 GIGIVPYCP 213 (249)
Q Consensus 205 gi~v~a~sp 213 (249)
|+.++..+.
T Consensus 308 gi~~~~h~~ 316 (404)
T PRK15072 308 QVRTGSHGP 316 (404)
T ss_pred CCceeeccC
Confidence 999987643
No 98
>cd03314 MAL Methylaspartate ammonia lyase (3-methylaspartase, MAL) is a homodimeric enzyme, catalyzing the magnesium-dependent reversible alpha,beta-elimination of ammonia from L-threo-(2S,3S)-3-methylaspartic acid to mesaconic acid. This reaction is part of the main catabolic pathway for glutamate. MAL belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=64.61 E-value=1.1e+02 Score=27.57 Aligned_cols=85 Identities=18% Similarity=0.048 Sum_probs=61.1
Q ss_pred EEEeecCCCCCCHHHHHHHHHHHHHc------CCeeEEEcCCCCHHHHHHHhhcCCceEEeeecCccccc-hhhhHHHHH
Q 025707 129 LYYQHRVDTSVPIEETIGEMKKLVEE------GKIKYIGLSEASPDTIRRAHAVHPITAVQLEWSLWARD-IENEIVPLC 201 (249)
Q Consensus 129 l~~lh~~~~~~~~~~~~~~l~~l~~~------G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~~-~~~~~~~~~ 201 (249)
++++..|-+..+.++-++.+.++.+. +.=-..|-+.++...+.++++..-.+++|+..+-.-.- ...++.+.|
T Consensus 229 ~~~iEqP~~~~d~~~~~~~~a~Lr~~~~~~~~~iPIa~dEs~~t~~d~~~li~~~a~div~~kl~k~GGIt~a~kia~lA 308 (369)
T cd03314 229 PLRIEGPMDAGSREAQIERMAALRAELDRRGVGVRIVADEWCNTLEDIRDFADAGAAHMVQIKTPDLGGIDNTIDAVLYC 308 (369)
T ss_pred cEEEecCCCCCcchhhHHHHHHHHHHhhcCCCCceEEecCCcCCHHHHHHHHHhCCCCEEEecchhcCCHHHHHHHHHHH
Confidence 35676665544433456777777766 44445577778999999999888889999987654321 127899999
Q ss_pred HHhCCcEEeccc
Q 025707 202 RELGIGIVPYCP 213 (249)
Q Consensus 202 ~~~gi~v~a~sp 213 (249)
+++|+.++..+.
T Consensus 309 ~a~Gi~~~~h~~ 320 (369)
T cd03314 309 KEHGVGAYLGGS 320 (369)
T ss_pred HHcCCcEEEeCC
Confidence 999999998654
No 99
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=64.11 E-value=85 Score=26.18 Aligned_cols=138 Identities=13% Similarity=0.129 Sum_probs=82.2
Q ss_pred eecCCCCcccCcceeecccccCCCCCCCCHHHHHHHHHHHHHcCCCeEeCCCCcCCCchHHHHHHHHHc-----CCCCCe
Q 025707 12 VKLGTQGLEVSKLGYGCMSLSGCYNSPLSEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKE-----LPRENI 86 (249)
Q Consensus 12 ~~lg~~g~~vs~lg~Gt~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~g~se~~lg~~l~~-----~~r~~~ 86 (249)
+++|. |+.++.|.+ +.|..+.- ..--..+++.-++..|.+.-=. .+|.++.+++++ .+=.+.
T Consensus 19 krLGG-GiP~GsL~l----IEGd~~tG-KSvLsqr~~YG~L~~g~~v~yv-------sTe~T~refi~qm~sl~ydv~~~ 85 (235)
T COG2874 19 KRLGG-GIPVGSLIL----IEGDNGTG-KSVLSQRFAYGFLMNGYRVTYV-------STELTVREFIKQMESLSYDVSDF 85 (235)
T ss_pred hhccC-CCccCeEEE----EECCCCcc-HHHHHHHHHHHHHhCCceEEEE-------EechhHHHHHHHHHhcCCCchHH
Confidence 45653 677776655 22212221 2345667777788888876532 378888888877 233344
Q ss_pred EEEecccccccCCcccccCCCHHHHHHHHHHHHHHcCCCceeEEEeecCCCC------CCHHHHHHHHHHHHHcCCeeEE
Q 025707 87 QVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTS------VPIEETIGEMKKLVEEGKIKYI 160 (249)
Q Consensus 87 ~I~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~------~~~~~~~~~l~~l~~~G~ir~i 160 (249)
++.-++......- .+..+.+..-+.-++..++....-.-|++.+...+.- ..+.+.+..+..|.+.||+--+
T Consensus 86 ~l~G~l~~~~~~~--~~~~~~~~~~~~~L~~l~~~~k~~~~dViIIDSls~~~~~~~~~~vl~fm~~~r~l~d~gKvIil 163 (235)
T COG2874 86 LLSGRLLFFPVNL--EPVNWGRRSARKLLDLLLEFIKRWEKDVIIIDSLSAFATYDSEDAVLNFMTFLRKLSDLGKVIIL 163 (235)
T ss_pred HhcceeEEEEecc--cccccChHHHHHHHHHHHhhHHhhcCCEEEEecccHHhhcccHHHHHHHHHHHHHHHhCCCEEEE
Confidence 4444333221100 0123445556666777777777777899999876442 2345677778888899998777
Q ss_pred EcCC
Q 025707 161 GLSE 164 (249)
Q Consensus 161 Gvs~ 164 (249)
-+..
T Consensus 164 Tvhp 167 (235)
T COG2874 164 TVHP 167 (235)
T ss_pred EeCh
Confidence 7654
No 100
>cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=63.95 E-value=1.1e+02 Score=27.31 Aligned_cols=152 Identities=11% Similarity=0.037 Sum_probs=87.0
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCCCCcCCC--chHHHHHHHHHcCCCCCeEEEecccccccCCcccccCCCHHHHHHHHHH
Q 025707 40 SEEDGISIIKHAFSKGITFFDTADKYGPY--TNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEA 117 (249)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~g--~se~~lg~~l~~~~r~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~~~~ 117 (249)
+.++..+.++.+.+.|++.|-.- .++.. ......-+++++.-.+++-|.--.. ..++.+...+ +-+
T Consensus 143 ~~~~~~~~a~~~~~~Gf~~~Kik-~~~~~~~~~di~~i~~vR~~~G~~~~l~vDan----------~~~~~~~A~~-~~~ 210 (368)
T cd03329 143 SPEAYADFAEECKALGYRAIKLH-PWGPGVVRRDLKACLAVREAVGPDMRLMHDGA----------HWYSRADALR-LGR 210 (368)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEe-cCCchhHHHHHHHHHHHHHHhCCCCeEEEECC----------CCcCHHHHHH-HHH
Confidence 56777888888999999998763 22210 1112233344432223333332211 1234443322 222
Q ss_pred HHHHcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCCee-EEEcCCCC-HHHHHHHhhcCCceEEeeecCcccc-chh
Q 025707 118 SLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIK-YIGLSEAS-PDTIRRAHAVHPITAVQLEWSLWAR-DIE 194 (249)
Q Consensus 118 sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvs~~~-~~~l~~~~~~~~~~~~q~~~n~~~~-~~~ 194 (249)
.|+.+ ++.++..|-. ..+ ++.+.+|+++-.|. ..|=+-++ +..++++++...++++|...+..-. ...
T Consensus 211 ~l~~~-----~l~~iEeP~~---~~d-~~~~~~l~~~~~ipIa~~E~~~~~~~~~~~~i~~~a~d~v~~d~~~~GGit~~ 281 (368)
T cd03329 211 ALEEL-----GFFWYEDPLR---EAS-ISSYRWLAEKLDIPILGTEHSRGALESRADWVLAGATDFLRADVNLVGGITGA 281 (368)
T ss_pred Hhhhc-----CCCeEeCCCC---chh-HHHHHHHHhcCCCCEEccCcccCcHHHHHHHHHhCCCCEEecCccccCCHHHH
Confidence 33333 4455555433 222 46677888775444 23434566 8888888888888999998766432 112
Q ss_pred hhHHHHHHHhCCcEEecc
Q 025707 195 NEIVPLCRELGIGIVPYC 212 (249)
Q Consensus 195 ~~~~~~~~~~gi~v~a~s 212 (249)
.++.+.|+++|+.+...+
T Consensus 282 ~~ia~~a~~~gi~~~~h~ 299 (368)
T cd03329 282 MKTAHLAEAFGLDVELHG 299 (368)
T ss_pred HHHHHHHHHcCCEEEEEC
Confidence 789999999999997644
No 101
>PRK09061 D-glutamate deacylase; Validated
Probab=63.94 E-value=83 Score=29.52 Aligned_cols=113 Identities=11% Similarity=0.089 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHcCCCeEeCCCCcCCCchHHHHHHHHHcCCCCCeEEEecccccccCCcccccCCCHHHHHHHHHHHHH-
Q 025707 42 EDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLR- 120 (249)
Q Consensus 42 ~~~~~~l~~A~~~Gi~~~Dta~~Yg~g~se~~lg~~l~~~~r~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~- 120 (249)
++..++++.|++.|+..|=+...|-.+.+...+-+.++...+-...|......... .++.....++++.++
T Consensus 169 ~~m~~ll~~al~~Ga~gis~~~~y~p~~~~~eL~~l~~~A~~~g~~v~~H~e~~~~--------~~~~~e~~av~~~i~l 240 (509)
T PRK09061 169 AEILELLEQGLDEGALGIGIGAGYAPGTGHKEYLELARLAARAGVPTYTHVRYLSN--------VDPRSSVDAYQELIAA 240 (509)
T ss_pred HHHHHHHHHHHHCCCCEEecCCccCCCCCHHHHHHHHHHHHHcCCEEEEEecCccc--------CCchhHHHHHHHHHHH
Confidence 34778889999999999987666744456666766766544556666666542210 011122223333333
Q ss_pred --HcCCCceeEEEeecCCC-CCCHHHHHHHHHHHHHcCCeeEEEcCCC
Q 025707 121 --RLDVEYIDLYYQHRVDT-SVPIEETIGEMKKLVEEGKIKYIGLSEA 165 (249)
Q Consensus 121 --~Lg~d~iDl~~lh~~~~-~~~~~~~~~~l~~l~~~G~ir~iGvs~~ 165 (249)
..|+. +.+.|-... .....+.++.+++++++|.--..-++.|
T Consensus 241 A~~~G~r---v~IsHlss~g~~~~~~~le~I~~Ar~~Gi~Vt~e~~P~ 285 (509)
T PRK09061 241 AAETGAH---MHICHVNSTSLRDIDRCLALVEKAQAQGLDVTTEAYPY 285 (509)
T ss_pred HHHhCCC---EEEEeeccCCcccHHHHHHHHHHHHHcCCcEEEEecCc
Confidence 44542 555565432 2356788999999999985443444433
No 102
>smart00642 Aamy Alpha-amylase domain.
Probab=63.69 E-value=11 Score=29.72 Aligned_cols=21 Identities=19% Similarity=0.313 Sum_probs=17.6
Q ss_pred hhHHHHHHHhCCcEEecccCc
Q 025707 195 NEIVPLCRELGIGIVPYCPLG 215 (249)
Q Consensus 195 ~~~~~~~~~~gi~v~a~spl~ 215 (249)
..+++.|+++||.|+.=-++.
T Consensus 73 ~~lv~~~h~~Gi~vilD~V~N 93 (166)
T smart00642 73 KELVDAAHARGIKVILDVVIN 93 (166)
T ss_pred HHHHHHHHHCCCEEEEEECCC
Confidence 889999999999999755553
No 103
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=63.48 E-value=1.1e+02 Score=27.04 Aligned_cols=132 Identities=17% Similarity=0.076 Sum_probs=87.4
Q ss_pred CHHHHHHHHHHHHHcCCCeEeC----------CCCcCCC--chHHHHHHHHHc---CCCCCeEEEecccccccCCccccc
Q 025707 40 SEEDGISIIKHAFSKGITFFDT----------ADKYGPY--TNEILLGKALKE---LPRENIQVATKFGFVELGFTSVIV 104 (249)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~Dt----------a~~Yg~g--~se~~lg~~l~~---~~r~~~~I~tK~~~~~~~~~~~~~ 104 (249)
+++...+..+.+-+.|+..||- ...+|.. .+...+.+.++. ... ++-|+.|+...+..
T Consensus 77 dp~~l~eaA~~~~~~g~~~IdlN~GCP~~~V~~~g~Ga~Ll~~p~lv~~iv~a~~~av~-~iPVTVKiRlG~d~------ 149 (323)
T COG0042 77 DPELLAEAAKIAEELGADIIDLNCGCPSPKVVKGGAGAALLKNPELLAEIVKAMVEAVG-DIPVTVKIRLGWDD------ 149 (323)
T ss_pred CHHHHHHHHHHHHhcCCCEEeeeCCCChHHhcCCCcchhhcCCHHHHHHHHHHHHHhhC-CCCeEEEEecccCc------
Confidence 5688889999999999999994 2333321 355666666665 122 67788887654411
Q ss_pred CCCHHHHHHHHHHHHHHcCCCceeEEEeecCCCCCCH--HHHHHHHHHHHHcCC-eeEEEcCC-CCHHHHHHHhhcCCce
Q 025707 105 KGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPI--EETIGEMKKLVEEGK-IKYIGLSE-ASPDTIRRAHAVHPIT 180 (249)
Q Consensus 105 ~~s~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~--~~~~~~l~~l~~~G~-ir~iGvs~-~~~~~l~~~~~~~~~~ 180 (249)
.+.....+.+.++.-|+ |.+.+|........ ..-|+.+.++++.=. |.-||=.+ ++++...+.++....+
T Consensus 150 ---~~~~~~~ia~~~~~~g~---~~ltVHgRtr~~~y~~~ad~~~I~~vk~~~~~ipvi~NGdI~s~~~a~~~l~~tg~D 223 (323)
T COG0042 150 ---DDILALEIARILEDAGA---DALTVHGRTRAQGYLGPADWDYIKELKEAVPSIPVIANGDIKSLEDAKEMLEYTGAD 223 (323)
T ss_pred ---ccccHHHHHHHHHhcCC---CEEEEecccHHhcCCCccCHHHHHHHHHhCCCCeEEeCCCcCCHHHHHHHHHhhCCC
Confidence 12244456677777776 77999987553322 146888888888766 66666555 6888888888876666
Q ss_pred EEee
Q 025707 181 AVQL 184 (249)
Q Consensus 181 ~~q~ 184 (249)
-+++
T Consensus 224 gVMi 227 (323)
T COG0042 224 GVMI 227 (323)
T ss_pred EEEE
Confidence 6666
No 104
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=63.04 E-value=83 Score=29.40 Aligned_cols=89 Identities=9% Similarity=0.060 Sum_probs=53.8
Q ss_pred HHHHHHHcCCCceeEEEeecCCC--------CCCHHHHHHHHHHHHHcCCeeE----EEcCCCCHHHHHHHhhc---CCc
Q 025707 115 CEASLRRLDVEYIDLYYQHRVDT--------SVPIEETIGEMKKLVEEGKIKY----IGLSEASPDTIRRAHAV---HPI 179 (249)
Q Consensus 115 ~~~sL~~Lg~d~iDl~~lh~~~~--------~~~~~~~~~~l~~l~~~G~ir~----iGvs~~~~~~l~~~~~~---~~~ 179 (249)
+-+.+++.|+.++-+- +...++ ....+++.++++.+++.|.... +|+-+-+.+.+++.++. .++
T Consensus 289 ll~~l~~aG~~~v~iG-iES~~~~~L~~~~K~~t~~~~~~ai~~l~~~Gi~~~~~~I~G~P~et~e~~~~t~~~~~~l~~ 367 (497)
T TIGR02026 289 ILHLYRRAGLVHISLG-TEAAAQATLDHFRKGTTTSTNKEAIRLLRQHNILSEAQFITGFENETDETFEETYRQLLDWDP 367 (497)
T ss_pred HHHHHHHhCCcEEEEc-cccCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCcEEEEEEEECCCCCHHHHHHHHHHHHHcCC
Confidence 4455666777665442 222222 2446788899999999987433 47777777777665543 334
Q ss_pred eEEeeecCccccchhhhHHHHHHHhCC
Q 025707 180 TAVQLEWSLWARDIENEIVPLCRELGI 206 (249)
Q Consensus 180 ~~~q~~~n~~~~~~~~~~~~~~~~~gi 206 (249)
+.. .++.+.+.+...+.+.+++.+.
T Consensus 368 ~~~--~~~~~tP~PGT~l~~~~~~~~~ 392 (497)
T TIGR02026 368 DQA--NWLMYTPWPFTSLFGELSDRVE 392 (497)
T ss_pred Cce--EEEEecCCCCcHHHHHHHhhcc
Confidence 433 3455555445678888877654
No 105
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=62.74 E-value=65 Score=28.78 Aligned_cols=60 Identities=15% Similarity=0.014 Sum_probs=34.5
Q ss_pred CCHHHHHHHHHHHHHHcCCCceeEEEee-cCCCC------------CCHH----HHHHHHHHHHHcCCeeEEEcCCCCH
Q 025707 106 GTPEYVRSCCEASLRRLDVEYIDLYYQH-RVDTS------------VPIE----ETIGEMKKLVEEGKIKYIGLSEASP 167 (249)
Q Consensus 106 ~s~~~i~~~~~~sL~~Lg~d~iDl~~lh-~~~~~------------~~~~----~~~~~l~~l~~~G~ir~iGvs~~~~ 167 (249)
.+.+.+++.++.. .+++.+++.++.+. .|... ...+ ..-.+.+.|.+.|.. .+++++|..
T Consensus 164 qt~~~~~~~l~~~-~~l~~~~i~~y~l~~~pgT~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~Gy~-~~~~~~fa~ 240 (377)
T PRK08599 164 QTIEDFKESLAKA-LALDIPHYSAYSLILEPKTVFYNLMRKGKLRLPGEDLEAEMYEYLMDEMEAHGFH-QYEISNFAK 240 (377)
T ss_pred CCHHHHHHHHHHH-HccCCCEEeeeceeecCCChhHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHcCCc-EeeeeeeeC
Confidence 4677777777654 55888888777543 22110 0111 123356666777764 578887753
No 106
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=62.33 E-value=99 Score=26.35 Aligned_cols=150 Identities=15% Similarity=0.097 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHcCCCeEeCCCCcCCCchHHHHH--HHHHcCCCCCeEEEecccccccCCcccccCCCHHHHHHHHHHHH
Q 025707 42 EDGISIIKHAFSKGITFFDTADKYGPYTNEILLG--KALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASL 119 (249)
Q Consensus 42 ~~~~~~l~~A~~~Gi~~~Dta~~Yg~g~se~~lg--~~l~~~~r~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL 119 (249)
+...+.++..-+.|+.+|..+..=+....+..+. +.|+....-+.+ -.+. ..+.++..+...+...
T Consensus 15 ~~l~~~~~~l~~~~pd~isvT~~~~~~~~~~t~~~a~~l~~~~g~~~i--~Hlt---------~r~~n~~~l~~~L~~~- 82 (272)
T TIGR00676 15 ENLWETVDRLSPLDPDFVSVTYGAGGSTRDRTVRIVRRIKKETGIPTV--PHLT---------CIGATREEIREILREY- 82 (272)
T ss_pred HHHHHHHHHHhcCCCCEEEeccCCCCCcHHHHHHHHHHHHHhcCCCee--EEee---------ecCCCHHHHHHHHHHH-
Confidence 5566666666688999999887655333444443 333311011111 1111 1134677777777754
Q ss_pred HHcCCCceeEEEeec-CC------CCCCHHHHHHHHHHHHHcCCeeEEEcCCCC--------H-HHHHHHhhc----CCc
Q 025707 120 RRLDVEYIDLYYQHR-VD------TSVPIEETIGEMKKLVEEGKIKYIGLSEAS--------P-DTIRRAHAV----HPI 179 (249)
Q Consensus 120 ~~Lg~d~iDl~~lh~-~~------~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~--------~-~~l~~~~~~----~~~ 179 (249)
..+|++. ++.+-. +. .......+.+-++.+++..---.||+..+. . +.++.+... ..+
T Consensus 83 ~~~Gi~n--vL~l~GD~~~~~~~~~~~~f~~a~~Li~~i~~~~~~f~ig~a~~Peghp~~~~~~~~~~~L~~K~~aGA~f 160 (272)
T TIGR00676 83 RELGIRH--ILALRGDPPKGEGTPTPGGFNYASELVEFIRNEFGDFDIGVAAYPEKHPEAPNLEEDIENLKRKVDAGADY 160 (272)
T ss_pred HHCCCCE--EEEeCCCCCCCCCCCCCCCCCCHHHHHHHHHHhcCCeeEEEEeCCCCCCCCCCHHHHHHHHHHHHHcCCCe
Confidence 7788653 343432 22 111223355555555554222467766532 1 234434333 234
Q ss_pred eEEeeecCccccchhhhHHHHHHHhCCcE
Q 025707 180 TAVQLEWSLWARDIENEIVPLCRELGIGI 208 (249)
Q Consensus 180 ~~~q~~~n~~~~~~~~~~~~~~~~~gi~v 208 (249)
-+-|.-|+. ..-.++++.|++.|+.+
T Consensus 161 ~iTQ~~fd~---~~~~~~~~~~~~~gi~~ 186 (272)
T TIGR00676 161 AITQLFFDN---DDYYRFVDRCRAAGIDV 186 (272)
T ss_pred EeeccccCH---HHHHHHHHHHHHcCCCC
Confidence 445554443 33377889999997654
No 107
>TIGR03247 glucar-dehydr glucarate dehydratase. Glucarate dehydratase converts D-glucarate (and L-idarate, a stereoisomer) to 5-dehydro-4-deoxyglucarate which is subsequently acted on by GarL, tartronate semialdehyde reductase and glycerate kinase (, GenProp0716). The E. coli enzyme has been well-characterized.
Probab=61.92 E-value=1.3e+02 Score=27.69 Aligned_cols=156 Identities=11% Similarity=0.057 Sum_probs=86.2
Q ss_pred CHHHHHHHHHHHHH-cCCCeEeCCCCcCCCchHHHHHHHHHcCCCCCeEEEecccccccCCcccccCCCHHHHHHHHHHH
Q 025707 40 SEEDGISIIKHAFS-KGITFFDTADKYGPYTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEAS 118 (249)
Q Consensus 40 ~~~~~~~~l~~A~~-~Gi~~~Dta~~Yg~g~se~~lg~~l~~~~r~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~~~~s 118 (249)
+.++..+..+.+++ .|++.|=.--.-.++......-+++++.- +++-|..-.. ..++++... +.
T Consensus 180 ~~e~~~~~a~~~~~~~Gf~a~KiKvG~~~~~~Di~~v~avRea~-~d~~L~vDAN----------~~wt~~~Ai----~~ 244 (441)
T TIGR03247 180 TPEAVVRLAEAAYDRYGFRDFKLKGGVLRGEEEIEAVTALAKRF-PQARITLDPN----------GAWSLDEAI----AL 244 (441)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEecCCCChHHHHHHHHHHHHhC-CCCeEEEECC----------CCCCHHHHH----HH
Confidence 45666666666665 59998864321111122233334555422 3443332221 123444332 33
Q ss_pred HHHcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCCee-EEEcCCCCHHHHHHHhhcCCceEEeeecCccccchhhhH
Q 025707 119 LRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIK-YIGLSEASPDTIRRAHAVHPITAVQLEWSLWARDIENEI 197 (249)
Q Consensus 119 L~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~~ 197 (249)
+++|. ++ +.++..|-...+..+-++.+.+|++.-.|. ..|-+.++...+..+++...++++|......--....++
T Consensus 245 ~~~Le-~~--~~~iEePv~~~d~~~~~~~la~Lr~~~~iPIa~dEs~~~~~~~~~li~~~avdi~~~d~~~gGIt~~~kI 321 (441)
T TIGR03247 245 CKDLK-GV--LAYAEDPCGAEQGYSGREVMAEFRRATGLPTATNMIATDWRQMGHALQLQAVDIPLADPHFWTMQGSVRV 321 (441)
T ss_pred HHHhh-hh--hceEeCCCCcccccchHHHHHHHHHhCCCCEEcCCccCCHHHHHHHHHhCCCCEEeccCCcchHHHHHHH
Confidence 33443 23 345666544332112366777787664443 336667788899998888788888887532111112789
Q ss_pred HHHHHHhCCcEEeccc
Q 025707 198 VPLCRELGIGIVPYCP 213 (249)
Q Consensus 198 ~~~~~~~gi~v~a~sp 213 (249)
.+.|+++|+.+..++.
T Consensus 322 a~lA~a~Gi~v~~h~~ 337 (441)
T TIGR03247 322 AQMCHDWGLTWGSHSN 337 (441)
T ss_pred HHHHHHcCCEEEEeCC
Confidence 9999999999988754
No 108
>cd03317 NAAAR N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of N-acylamino acids. NAAARs act on a broad range of N-acylamino acids rather than amino acids. Enantiopure amino acids are of industrial interest as chiral building blocks for antibiotics, herbicides, and drugs. NAAAR is a member of the enolase superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=61.86 E-value=1.1e+02 Score=26.89 Aligned_cols=149 Identities=19% Similarity=0.149 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHHcCCCeEeCCCCcCCCchHHHHHHHHHc-CCCCCeEEEecccccccCCcccccCCCHHHHHHHHHHHHH
Q 025707 42 EDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKE-LPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLR 120 (249)
Q Consensus 42 ~~~~~~l~~A~~~Gi~~~Dta~~Yg~g~se~~lg~~l~~-~~r~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~ 120 (249)
++..+.+..+.+.|++.|=.-- +.....+.+ +++++ .+ ++-|.--.. ..++++... .++
T Consensus 139 ~~~~~~~~~~~~~Gf~~~KiKv--~~~~d~~~l-~~vr~~~g--~~~l~lDaN----------~~~~~~~a~-----~~~ 198 (354)
T cd03317 139 EQLLKQIERYLEEGYKRIKLKI--KPGWDVEPL-KAVRERFP--DIPLMADAN----------SAYTLADIP-----LLK 198 (354)
T ss_pred HHHHHHHHHHHHcCCcEEEEec--ChHHHHHHH-HHHHHHCC--CCeEEEECC----------CCCCHHHHH-----HHH
Confidence 6677888888999999985432 211223333 44444 33 333332221 124444432 234
Q ss_pred HcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCC-eeEEEcCCCCHHHHHHHhhcCCceEEeeecCcccc-chhhhHH
Q 025707 121 RLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGK-IKYIGLSEASPDTIRRAHAVHPITAVQLEWSLWAR-DIENEIV 198 (249)
Q Consensus 121 ~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~-ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~~~ 198 (249)
+|. ..++.++..|-.. +-++.+.+++++-. =-..|=|.++...+..+++...++++|+..+..-. ....++.
T Consensus 199 ~l~--~~~i~~iEeP~~~----~d~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~~~~d~~~ik~~~~GGit~~~~i~ 272 (354)
T cd03317 199 RLD--EYGLLMIEQPLAA----DDLIDHAELQKLLKTPICLDESIQSAEDARKAIELGACKIINIKPGRVGGLTEALKIH 272 (354)
T ss_pred Hhh--cCCccEEECCCCh----hHHHHHHHHHhhcCCCEEeCCccCCHHHHHHHHHcCCCCEEEecccccCCHHHHHHHH
Confidence 442 3356666655332 23556667765533 23557778899999999988888899997665432 1227899
Q ss_pred HHHHHhCCcEEecccCcc
Q 025707 199 PLCRELGIGIVPYCPLGR 216 (249)
Q Consensus 199 ~~~~~~gi~v~a~spl~~ 216 (249)
+.|+++|+.++..+.+..
T Consensus 273 ~~A~~~gi~~~~g~~~es 290 (354)
T cd03317 273 DLCQEHGIPVWCGGMLES 290 (354)
T ss_pred HHHHHcCCcEEecCcccc
Confidence 999999999987655433
No 109
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=61.64 E-value=1.4e+02 Score=28.03 Aligned_cols=133 Identities=11% Similarity=0.176 Sum_probs=73.0
Q ss_pred hHHHHHHHHHc----CCCCCeEEEecccccccCCcccccCCCHHHHHHHHHHHHHHcCC-CceeEEEeecCCCCCC-H--
Q 025707 70 NEILLGKALKE----LPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLDV-EYIDLYYQHRVDTSVP-I-- 141 (249)
Q Consensus 70 se~~lg~~l~~----~~r~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~~Lg~-d~iDl~~lh~~~~~~~-~-- 141 (249)
.++.+-+++++ .+.+=++|.|-. .++-|-+.++...+.+.. .-++++.+|.+..... .
T Consensus 69 g~~kL~~~I~~~~~~~~P~~I~V~tTC--------------~~eiIGDDi~~v~~~~~~~~~~pVi~v~t~~f~g~~~~g 134 (513)
T CHL00076 69 SQEKVVDNITRKDKEERPDLIVLTPTC--------------TSSILQEDLQNFVDRASIESDSDVILADVNHYRVNELQA 134 (513)
T ss_pred hHHHHHHHHHHHHHhcCCCEEEECCCC--------------chhhhhcCHHHHHHHhhcccCCCEEEeCCCCCcccHHHH
Confidence 55555566654 334444444432 234444445555554441 2357999998855432 1
Q ss_pred -HHHHHHHHH-H--------------HHcCCeeEEEcCC------CCHHHHHHHhhcCCceEEee---------------
Q 025707 142 -EETIGEMKK-L--------------VEEGKIKYIGLSE------ASPDTIRRAHAVHPITAVQL--------------- 184 (249)
Q Consensus 142 -~~~~~~l~~-l--------------~~~G~ir~iGvs~------~~~~~l~~~~~~~~~~~~q~--------------- 184 (249)
+.+++.+-+ + +..++|.-||.++ .+...+.++++..++.++.+
T Consensus 135 ~~~~l~~lv~~~~~~~~~~~~~~~~~~~~~~VNIIG~~~l~f~~~~Dl~eikrLL~~~Gi~vn~v~~~g~sl~di~~~~~ 214 (513)
T CHL00076 135 ADRTLEQIVRFYLEKARKQGTLDQSKTDKPSVNIIGIFTLGFHNQHDCRELKRLLQDLGIEINQIIPEGGSVEDLKNLPK 214 (513)
T ss_pred HHHHHHHHHHHHhhcccccccccccCCCCCcEEEEecCCCCCCCcchHHHHHHHHHHCCCeEEEEECCCCCHHHHHhccc
Confidence 222222221 1 1346799998774 35577888887766666533
Q ss_pred -ecCccc-cchhhhHHHHHHH-hCCcEEecccCcc
Q 025707 185 -EWSLWA-RDIENEIVPLCRE-LGIGIVPYCPLGR 216 (249)
Q Consensus 185 -~~n~~~-~~~~~~~~~~~~~-~gi~v~a~spl~~ 216 (249)
.+|+.. +.....+.++.++ .|++.+...|++-
T Consensus 215 A~~NIvl~~~~g~~~A~~Le~~fgiP~i~~~PiGi 249 (513)
T CHL00076 215 AWFNIVPYREVGLMTAKYLEKEFGMPYISTTPMGI 249 (513)
T ss_pred CcEEEEechhhhHHHHHHHHHHhCCCeEeeccCCH
Confidence 233332 2222456666665 4999988788753
No 110
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=61.56 E-value=1.1e+02 Score=28.73 Aligned_cols=131 Identities=18% Similarity=0.220 Sum_probs=74.1
Q ss_pred hHHHHHHHHHc----CCCCCeEEEecccccccCCcccccCCCHHHHHHHHHHHHHHcCCCceeEEEeecCCCCCC----H
Q 025707 70 NEILLGKALKE----LPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVP----I 141 (249)
Q Consensus 70 se~~lg~~l~~----~~r~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~----~ 141 (249)
+|+.|-+++++ .+.+=|+|.+-. .++-|-..++...+.++. .+.++.++.+.-... .
T Consensus 69 ~~ekL~~aI~~~~~~~~P~~I~V~sTC--------------~seiIGdDi~~v~~~~~~-~~~Vi~v~t~gf~~~~~~G~ 133 (519)
T PRK02910 69 TAELLKDTLRRADERFQPDLIVVGPSC--------------TAELLQEDLGGLAKHAGL-PIPVLPLELNAYRVKENWAA 133 (519)
T ss_pred hHHHHHHHHHHHHHhcCCCEEEEeCCc--------------HHHHhccCHHHHHHHhCC-CCCEEEEecCCcccccchHH
Confidence 56677777766 223334554432 355566666766677765 357888888855432 2
Q ss_pred HHHHHHHH-HHH-----------HcCCeeEEEcCC------CCHHHHHHHhhcCCceEEeee----------------cC
Q 025707 142 EETIGEMK-KLV-----------EEGKIKYIGLSE------ASPDTIRRAHAVHPITAVQLE----------------WS 187 (249)
Q Consensus 142 ~~~~~~l~-~l~-----------~~G~ir~iGvs~------~~~~~l~~~~~~~~~~~~q~~----------------~n 187 (249)
+.+++.+- .+. +.+.|--||.++ .+...+.++++..++.++.+. +|
T Consensus 134 ~~al~~lv~~~~~~~~~~~~~~~~~~~VNIiG~~~l~f~~~~D~~EikrlL~~~Gi~vn~v~p~g~s~~di~~l~~A~~n 213 (519)
T PRK02910 134 DETFYQLVRALAKKAAELPQPKTARPSVNLLGPTALGFHHRDDLTELRRLLATLGIDVNVVAPLGASPADLKRLPAAWFN 213 (519)
T ss_pred HHHHHHHHHHHhhhcccccccCCCCCeEEEEecCccCCCChhHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHhcccCcEE
Confidence 23333322 121 235688899864 244677777777777665542 33
Q ss_pred cc-ccchhhhHHHHHH-HhCCcEEecccCc
Q 025707 188 LW-ARDIENEIVPLCR-ELGIGIVPYCPLG 215 (249)
Q Consensus 188 ~~-~~~~~~~~~~~~~-~~gi~v~a~spl~ 215 (249)
+. .+.....+.++.+ +.|++++...|++
T Consensus 214 ivl~~~~g~~~A~~Lee~fGiP~i~~~PiG 243 (519)
T PRK02910 214 VVLYREIGESAARYLEREFGQPYVKTVPIG 243 (519)
T ss_pred EEeCHHHHHHHHHHHHHHhCCccccccccc
Confidence 33 2222244555555 4489998877765
No 111
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=61.42 E-value=1.1e+02 Score=26.63 Aligned_cols=134 Identities=15% Similarity=0.098 Sum_probs=78.4
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCCC---------Cc-CC--CchHHHHHHHHHcC-CCCCeEEEecccccccCCcccccCC
Q 025707 40 SEEDGISIIKHAFSKGITFFDTAD---------KY-GP--YTNEILLGKALKEL-PRENIQVATKFGFVELGFTSVIVKG 106 (249)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~Dta~---------~Y-g~--g~se~~lg~~l~~~-~r~~~~I~tK~~~~~~~~~~~~~~~ 106 (249)
+.++..+..+.+.++|+..||.-- .| |. ....+.+.+.++.+ ..-.+-|+.|+..... .
T Consensus 73 ~~~~~~~aa~~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~~~pv~vKir~g~~--------~ 144 (319)
T TIGR00737 73 DPDTMAEAAKINEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDAVDIPVTVKIRIGWD--------D 144 (319)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHhhcCCCEEEEEEcccC--------C
Confidence 678888999999999999998621 22 21 11234555555542 1223567777643211 0
Q ss_pred CHHHHHHHHHHHHHHcCCCceeEEEeecCCCCCCH--HHHHHHHHHHHHcCCeeEEEcCC-CCHHHHHHHhhcCCceEEe
Q 025707 107 TPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPI--EETIGEMKKLVEEGKIKYIGLSE-ASPDTIRRAHAVHPITAVQ 183 (249)
Q Consensus 107 s~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~--~~~~~~l~~l~~~G~ir~iGvs~-~~~~~l~~~~~~~~~~~~q 183 (249)
....+ ..+-+.|+..|+|. +.+|........ ...|+.+.++++.=.+.-|+... .+++.++++++....+.++
T Consensus 145 ~~~~~-~~~a~~l~~~G~d~---i~vh~r~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~~~~da~~~l~~~gad~Vm 220 (319)
T TIGR00737 145 AHINA-VEAARIAEDAGAQA---VTLHGRTRAQGYSGEANWDIIARVKQAVRIPVIGNGDIFSPEDAKAMLETTGCDGVM 220 (319)
T ss_pred CcchH-HHHHHHHHHhCCCE---EEEEcccccccCCCchhHHHHHHHHHcCCCcEEEeCCCCCHHHHHHHHHhhCCCEEE
Confidence 11111 23445567778754 556754322111 23577788888776677777765 4667888888666777777
Q ss_pred ee
Q 025707 184 LE 185 (249)
Q Consensus 184 ~~ 185 (249)
+-
T Consensus 221 ig 222 (319)
T TIGR00737 221 IG 222 (319)
T ss_pred EC
Confidence 73
No 112
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=60.84 E-value=99 Score=25.87 Aligned_cols=86 Identities=12% Similarity=0.080 Sum_probs=49.0
Q ss_pred HHHHcCCCceeEEEeecCCCC---CCHHHHHHHHHHHHHcCCeeEEEcCC-CCHHHHHHHhhcCCceEEeeecCccccch
Q 025707 118 SLRRLDVEYIDLYYQHRVDTS---VPIEETIGEMKKLVEEGKIKYIGLSE-ASPDTIRRAHAVHPITAVQLEWSLWARDI 193 (249)
Q Consensus 118 sL~~Lg~d~iDl~~lh~~~~~---~~~~~~~~~l~~l~~~G~ir~iGvs~-~~~~~l~~~~~~~~~~~~q~~~n~~~~~~ 193 (249)
-+..+|++ -+.+|..+.. ... -|+.+.++++.-.+.-|.-.. .+.+.+.++.+...++.+.+---+.....
T Consensus 161 ~~~~~g~~---~ii~~~i~~~g~~~g~--d~~~i~~~~~~~~ipvia~GGv~s~~d~~~~~~~~G~~gvivg~al~~~~~ 235 (253)
T PRK02083 161 EVEELGAG---EILLTSMDRDGTKNGY--DLELTRAVSDAVNVPVIASGGAGNLEHFVEAFTEGGADAALAASIFHFGEI 235 (253)
T ss_pred HHHHcCCC---EEEEcCCcCCCCCCCc--CHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHhCCccEEeEhHHHHcCCC
Confidence 33566665 4677654431 111 256666666655566665543 45677877776555655555322222221
Q ss_pred -hhhHHHHHHHhCCcE
Q 025707 194 -ENEIVPLCRELGIGI 208 (249)
Q Consensus 194 -~~~~~~~~~~~gi~v 208 (249)
..++.+.|++.||.+
T Consensus 236 ~~~~~~~~~~~~~~~~ 251 (253)
T PRK02083 236 TIGELKAYLAEQGIPV 251 (253)
T ss_pred CHHHHHHHHHHCCCcc
Confidence 277899999988875
No 113
>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]
Probab=60.83 E-value=58 Score=29.63 Aligned_cols=38 Identities=24% Similarity=0.170 Sum_probs=25.6
Q ss_pred CCCeEeCCCCcCC---CchHHHHHHHHHcCCCCCeEEEeccc
Q 025707 55 GITFFDTADKYGP---YTNEILLGKALKELPRENIQVATKFG 93 (249)
Q Consensus 55 Gi~~~Dta~~Yg~---g~se~~lg~~l~~~~r~~~~I~tK~~ 93 (249)
|=+|+|....|+- |++...+-++|++ .-++++..+.+.
T Consensus 41 G~~YlDf~~Giav~~lGH~hP~iv~al~~-Q~~kl~h~sn~~ 81 (404)
T COG4992 41 GREYLDFAAGIAVNNLGHCHPALVEALKE-QAEKLWHVSNLF 81 (404)
T ss_pred CCEeeeeccceeeeccCCCCHHHHHHHHH-HHHHhhhccccc
Confidence 7778887777763 6777777788875 455555555544
No 114
>PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A ....
Probab=60.78 E-value=92 Score=25.49 Aligned_cols=121 Identities=16% Similarity=0.077 Sum_probs=68.6
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCCCCcCCCchHHHHHHHHHcCCCCCeEEEecccccccCCcccccCCCHHHHHHHHHHH
Q 025707 39 LSEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEAS 118 (249)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~g~se~~lg~~l~~~~r~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~~~~s 118 (249)
.++++-.++++.+++.|+.++|.--... .+...-.......+.+++++..-.... .+.+.+.+.+++.
T Consensus 72 ~~~~~~~~ll~~~~~~~~d~iDiE~~~~---~~~~~~~~~~~~~~~~iI~S~H~f~~t---------p~~~~l~~~~~~~ 139 (224)
T PF01487_consen 72 GSEEEYLELLERAIRLGPDYIDIELDLF---PDDLKSRLAARKGGTKIILSYHDFEKT---------PSWEELIELLEEM 139 (224)
T ss_dssp S-HHHHHHHHHHHHHHTSSEEEEEGGCC---HHHHHHHHHHHHTTSEEEEEEEESS------------THHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEcccc---hhHHHHHHHHhhCCCeEEEEeccCCCC---------CCHHHHHHHHHHH
Confidence 4789999999999999999999865532 222221222224778888888743222 2334455555544
Q ss_pred HHHcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCCHHHHHHHh
Q 025707 119 LRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAH 174 (249)
Q Consensus 119 L~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~ 174 (249)
. .+|.|.+=+..... ...+....++...++++.-...-|+++.-....+-++.
T Consensus 140 ~-~~gadivKia~~~~--~~~D~~~l~~~~~~~~~~~~~p~i~~~MG~~G~~SRi~ 192 (224)
T PF01487_consen 140 Q-ELGADIVKIAVMAN--SPEDVLRLLRFTKEFREEPDIPVIAISMGELGRISRIL 192 (224)
T ss_dssp H-HTT-SEEEEEEE-S--SHHHHHHHHHHHHHHHHHTSSEEEEEEETGGGHHHHHC
T ss_pred H-hcCCCeEEEEeccC--CHHHHHHHHHHHHHHhhccCCcEEEEEcCCCchhHHHH
Confidence 4 77876665555532 23345556666666665544555555554444444443
No 115
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=60.26 E-value=48 Score=25.94 Aligned_cols=76 Identities=20% Similarity=0.174 Sum_probs=49.0
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCeEeCCCCcCCCchHHHHHHHHHcCCCC-CeEEEec-ccccccCCcccccCCCHHHHH
Q 025707 35 YNSPLSEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELPRE-NIQVATK-FGFVELGFTSVIVKGTPEYVR 112 (249)
Q Consensus 35 ~~~~~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~g~se~~lg~~l~~~~r~-~~~I~tK-~~~~~~~~~~~~~~~s~~~i~ 112 (249)
.|.+..++..+-.+++|-+.||.+|=.|..|| ..- -+++...+.+ ++++.|. .+... .....+.
T Consensus 7 pG~eNT~~tle~a~erA~elgik~~vVAS~tG--~tA---~k~lemveg~lkvVvVthh~Gf~e---------~g~~e~~ 72 (186)
T COG1751 7 PGKENTDETLEIAVERAKELGIKHIVVASSTG--YTA---LKALEMVEGDLKVVVVTHHAGFEE---------KGTQEMD 72 (186)
T ss_pred CcccchHHHHHHHHHHHHhcCcceEEEEeccc--HHH---HHHHHhcccCceEEEEEeeccccc---------CCceecC
Confidence 55666778888889999999999999999998 222 2333322222 3444443 33332 1233466
Q ss_pred HHHHHHHHHcCC
Q 025707 113 SCCEASLRRLDV 124 (249)
Q Consensus 113 ~~~~~sL~~Lg~ 124 (249)
+.+++-|+..|.
T Consensus 73 ~E~~~~L~erGa 84 (186)
T COG1751 73 EEVRKELKERGA 84 (186)
T ss_pred HHHHHHHHHcCc
Confidence 778888889886
No 116
>TIGR01430 aden_deam adenosine deaminase. This family includes the experimentally verified adenosine deaminases of mammals and E. coli. Other members of this family are predicted also to be adenosine deaminase, an enzyme of nucleotide degradation. This family is distantly related to AMP deaminase.
Probab=59.94 E-value=1.2e+02 Score=26.40 Aligned_cols=99 Identities=14% Similarity=0.074 Sum_probs=52.6
Q ss_pred CHHHHHHHHHHHHHHcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCCeeEEEcCCC-CHHHHHHHhhcCCceEEeee
Q 025707 107 TPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEA-SPDTIRRAHAVHPITAVQLE 185 (249)
Q Consensus 107 s~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~-~~~~l~~~~~~~~~~~~q~~ 185 (249)
+++.+++.++..++ .+-+.+--+-++......+.+.....++..++.|.--.+=++.. +...+..++...+.+..-.-
T Consensus 138 ~~~~~~~~~~~~~~-~~~~~vvg~~l~~~e~~~~~~~~~~~~~~A~~~g~~i~~Ha~E~~~~~~~~~~~~~~g~~ri~Hg 216 (324)
T TIGR01430 138 QPEAAEETLELAKP-YKEQTIVGFGLAGDERGGPPPDFVRAFAIARELGLHLTVHAGELGGPESVREALDDLGATRIGHG 216 (324)
T ss_pred CHHHHHHHHHHHHh-hccCcEEEecCCCCCCCCCHHHHHHHHHHHHHCCCCeEEecCCCCChHHHHHHHHHcCchhcchh
Confidence 46677777776665 33222323334443333445666677777788777655555543 23344444432222222222
Q ss_pred cCccccchhhhHHHHHHHhCCcEE
Q 025707 186 WSLWARDIENEIVPLCRELGIGIV 209 (249)
Q Consensus 186 ~n~~~~~~~~~~~~~~~~~gi~v~ 209 (249)
+++.+ ..+.++.++++|+.+.
T Consensus 217 ~~l~~---~~~~i~~l~~~gi~v~ 237 (324)
T TIGR01430 217 VRALE---DPELLKRLAQENITLE 237 (324)
T ss_pred hhhcc---CHHHHHHHHHcCceEE
Confidence 22211 2568999999998874
No 117
>cd01301 rDP_like renal dipeptidase (rDP), best studied in mammals and also called membrane or microsomal dipeptidase, is a membrane-bound glycoprotein hydrolyzing dipeptides and is involved in hydrolytic metabolism of penem and carbapenem beta-lactam antibiotics. Although the biological function of the enzyme is still unknown, it has been suggested to play a role in the renal glutathione metabolism.
Probab=59.84 E-value=58 Score=28.47 Aligned_cols=107 Identities=14% Similarity=0.123 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHcCCCeEeCCCCcCCCchHHHHHHHHHcCCCCCeEEEecccccccCCcccccCCCHHHHHHHHHHHHHH
Q 025707 42 EDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRR 121 (249)
Q Consensus 42 ~~~~~~l~~A~~~Gi~~~Dta~~Yg~g~se~~lg~~l~~~~r~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~~ 121 (249)
+..+++|+...+.|+ .+|+|. -+++..-.+++- . +.-+|.|........+ ...+.+.+.+ +...++
T Consensus 154 ~~G~~vv~~mn~lGm-iiDvSH-----~s~~~~~dv~~~-s-~~PviaSHsn~ral~~--h~RNltD~~i----~~ia~~ 219 (309)
T cd01301 154 PFGKELVREMNRLGI-IIDLSH-----LSERTFWDVLDI-S-NAPVIASHSNARALCD--HPRNLTDAQL----KAIAET 219 (309)
T ss_pred HHHHHHHHHHHHcCC-EEEcCC-----CCHHHHHHHHHh-c-CCCEEEeccChHHhcC--CCCCCCHHHH----HHHHHc
Confidence 578899999999998 999997 578888888873 2 3447778776443211 1122333332 222233
Q ss_pred cCCCceeEEEeecC---CCCCCHHHHHHHHHHHHHcCCeeEEEcCC
Q 025707 122 LDVEYIDLYYQHRV---DTSVPIEETIGEMKKLVEEGKIKYIGLSE 164 (249)
Q Consensus 122 Lg~d~iDl~~lh~~---~~~~~~~~~~~~l~~l~~~G~ir~iGvs~ 164 (249)
=| .|-+.+.... +....++++++.++.+.+..=+.+||+.+
T Consensus 220 GG--vigi~~~~~fl~~~~~~~~~~~~~hi~~i~~l~G~dhVgiGs 263 (309)
T cd01301 220 GG--VIGVNFYPAFLSPGADATLDDVVRHIDYIVDLIGIDHVGLGS 263 (309)
T ss_pred CC--EEEEeeeHHHhCCCCCCCHHHHHHHHHHHHHhcCCCeEEECc
Confidence 33 3333333211 23466889999999999987799999975
No 118
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=59.63 E-value=1e+02 Score=25.63 Aligned_cols=52 Identities=19% Similarity=0.230 Sum_probs=32.7
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCCCCcCC------CchHHHHHHHHHcCCCCCeEEEe
Q 025707 39 LSEEDGISIIKHAFSKGITFFDTADKYGP------YTNEILLGKALKELPRENIQVAT 90 (249)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~------g~se~~lg~~l~~~~r~~~~I~t 90 (249)
.+.++..++++...+.||..|+....-.. ...++.+.+.-+..+...+...+
T Consensus 16 ~s~e~~~~i~~~L~~~GV~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~~~~~~~~~l~ 73 (265)
T cd03174 16 FSTEDKLEIAEALDEAGVDSIEVGSGASPKAVPQMEDDWEVLRAIRKLVPNVKLQALV 73 (265)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeccCcCccccccCCCHHHHHHHHHhccCCcEEEEEc
Confidence 47899999999999999999997643322 23455555444423333443333
No 119
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=59.45 E-value=61 Score=29.88 Aligned_cols=60 Identities=22% Similarity=0.270 Sum_probs=37.3
Q ss_pred CCHHHHHHHHHHHHHHcCCCceeEEEeec-CC----------CCC-CHHH---HH-HHHHHHHHcCCeeEEEcCCCCH
Q 025707 106 GTPEYVRSCCEASLRRLDVEYIDLYYQHR-VD----------TSV-PIEE---TI-GEMKKLVEEGKIKYIGLSEASP 167 (249)
Q Consensus 106 ~s~~~i~~~~~~sL~~Lg~d~iDl~~lh~-~~----------~~~-~~~~---~~-~~l~~l~~~G~ir~iGvs~~~~ 167 (249)
.+.+.+++.++..+ .++.+++.++.+-. |. ... +.++ .+ .+.+.|.+.|..+ +.+|+|..
T Consensus 215 qt~e~~~~~l~~~~-~l~~~~i~~y~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~~-ye~s~far 290 (453)
T PRK09249 215 QTPESFARTLEKVL-ELRPDRLAVFNYAHVPWLFKAQRKIDEADLPSPEEKLAILQQTIETLTEAGYQY-IGMDHFAL 290 (453)
T ss_pred CCHHHHHHHHHHHH-hcCCCEEEEccCccchhhhhHhcCCCcccCCCHHHHHHHHHHHHHHHHHCCCEE-EeccceeC
Confidence 56788888887766 48999999987641 11 001 1111 22 3355667778755 88888764
No 120
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=59.07 E-value=1.3e+02 Score=26.75 Aligned_cols=123 Identities=12% Similarity=0.190 Sum_probs=78.4
Q ss_pred CCHHHHHHHHHHHHHcC---CCeEeCCCCcCCCchHHHHHHHHHcCCCCCeEEEecccccccCCcccccCCCHHHHHHHH
Q 025707 39 LSEEDGISIIKHAFSKG---ITFFDTADKYGPYTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCC 115 (249)
Q Consensus 39 ~~~~~~~~~l~~A~~~G---i~~~Dta~~Yg~g~se~~lg~~l~~~~r~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~~ 115 (249)
.+.++..+++....+.- +-.+|..+..+ .-...+-+.+. ...-++|.+|..... ...+.+.+.+-+
T Consensus 48 ~~~e~f~~~l~~~~~~~~~Il~VvD~~d~~~--s~~~~l~~~~~--~~piilV~NK~DLl~-------k~~~~~~~~~~l 116 (360)
T TIGR03597 48 LNDDDFLNLLNSLGDSNALIVYVVDIFDFEG--SLIPELKRFVG--GNPVLLVGNKIDLLP-------KSVNLSKIKEWM 116 (360)
T ss_pred CCHHHHHHHHhhcccCCcEEEEEEECcCCCC--CccHHHHHHhC--CCCEEEEEEchhhCC-------CCCCHHHHHHHH
Confidence 46777888777765322 33457654443 11122333332 456688999987542 123456666667
Q ss_pred HHHHHHcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCCHHHHHHH
Q 025707 116 EASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRA 173 (249)
Q Consensus 116 ~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~ 173 (249)
.+.++..|....+++.+.. -....++++++.+.++.+.+.|--+|.+|..-+.+-..
T Consensus 117 ~~~~k~~g~~~~~i~~vSA-k~g~gv~eL~~~l~~~~~~~~v~~vG~~nvGKStliN~ 173 (360)
T TIGR03597 117 KKRAKELGLKPVDIILVSA-KKGNGIDELLDKIKKARNKKDVYVVGVTNVGKSSLINK 173 (360)
T ss_pred HHHHHHcCCCcCcEEEecC-CCCCCHHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHH
Confidence 7777788865446665543 44566889999998887777899999999888665443
No 121
>PRK05414 urocanate hydratase; Provisional
Probab=58.43 E-value=34 Score=31.97 Aligned_cols=125 Identities=17% Similarity=0.142 Sum_probs=80.7
Q ss_pred HHHHHHcCCCeE--eCCCCcCC--------CchHHHHHHHHHc---CCCCCeEEEecccccccCCc---------ccccC
Q 025707 48 IKHAFSKGITFF--DTADKYGP--------YTNEILLGKALKE---LPRENIQVATKFGFVELGFT---------SVIVK 105 (249)
Q Consensus 48 l~~A~~~Gi~~~--Dta~~Yg~--------g~se~~lg~~l~~---~~r~~~~I~tK~~~~~~~~~---------~~~~~ 105 (249)
.+..-+.|+..+ =||-.|.. |.-|.++.-+=+. ..+.++++++-++-.....+ ....+
T Consensus 118 f~~l~~~Gl~mYGQMTAGsw~YIG~QGIvqGTyeT~~~a~rk~f~g~L~G~~~lTaGLGGMgGAQPlA~~mag~v~i~vE 197 (556)
T PRK05414 118 FNELEAKGLTMYGQMTAGSWIYIGSQGIVQGTYETFAEAARQHFGGDLAGRLVLTAGLGGMGGAQPLAATMAGAVCLAVE 197 (556)
T ss_pred HHHHHHcccccccCccccceeEEcCceeeecHHHHHHHHHHHhcCCCCceeEEEEecCCccccccHHHHHhcCceEEEEE
Confidence 344556677655 35544421 4555555544443 24678899888876543211 01122
Q ss_pred CCHHHHHHHHHHHHHHcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCCHHHHHHHhhc---CCceEE
Q 025707 106 GTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAV---HPITAV 182 (249)
Q Consensus 106 ~s~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~---~~~~~~ 182 (249)
.+++.| -+|+.+.|+|.+ ..+++++++..++.+++|+..+||+-..-.+.++++.+. ..+..-
T Consensus 198 vd~~ri-------~kR~~~gyld~~-------~~~Ldeal~~~~~a~~~~~~~SIg~~GNaadv~~~l~~~~i~pDlvtD 263 (556)
T PRK05414 198 VDESRI-------DKRLRTGYLDEK-------ADDLDEALALAEEAKAAGEPLSIGLLGNAADVLPELVRRGIRPDLVTD 263 (556)
T ss_pred ECHHHH-------HHHHhCCcceeE-------cCCHHHHHHHHHHHHHcCCceEEEEeccHHHHHHHHHHcCCCCCccCc
Confidence 344444 457778888865 355899999999999999999999999988999888876 234445
Q ss_pred eeec
Q 025707 183 QLEW 186 (249)
Q Consensus 183 q~~~ 186 (249)
|.+.
T Consensus 264 QTSa 267 (556)
T PRK05414 264 QTSA 267 (556)
T ss_pred Cccc
Confidence 5543
No 122
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=58.43 E-value=25 Score=26.63 Aligned_cols=25 Identities=36% Similarity=0.622 Sum_probs=21.3
Q ss_pred cchhhhHHHHHHHhCCcEEecccCc
Q 025707 191 RDIENEIVPLCRELGIGIVPYCPLG 215 (249)
Q Consensus 191 ~~~~~~~~~~~~~~gi~v~a~spl~ 215 (249)
++...++++.|+++||.|++|-.+.
T Consensus 43 ~Dllge~v~a~h~~Girv~ay~~~~ 67 (132)
T PF14871_consen 43 RDLLGEQVEACHERGIRVPAYFDFS 67 (132)
T ss_pred cCHHHHHHHHHHHCCCEEEEEEeee
Confidence 3344889999999999999998876
No 123
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=58.20 E-value=1.4e+02 Score=26.70 Aligned_cols=26 Identities=15% Similarity=0.254 Sum_probs=22.3
Q ss_pred CCCHHHHHHHHHHHHHcCCCeEeCCC
Q 025707 38 PLSEEDGISIIKHAFSKGITFFDTAD 63 (249)
Q Consensus 38 ~~~~~~~~~~l~~A~~~Gi~~~Dta~ 63 (249)
..+.++..++++..-++||..|+...
T Consensus 18 ~~s~~~k~~ia~~L~~~Gv~~IEvG~ 43 (363)
T TIGR02090 18 SLTVEQKVEIARKLDELGVDVIEAGF 43 (363)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeC
Confidence 35789999999999999999999753
No 124
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=58.12 E-value=1.3e+02 Score=26.53 Aligned_cols=49 Identities=18% Similarity=0.224 Sum_probs=32.5
Q ss_pred CCCHHHHHHHHHHHHHcCCCeEeCC---------CCcCC--CchHHHHHHHHHcCCCCCe
Q 025707 38 PLSEEDGISIIKHAFSKGITFFDTA---------DKYGP--YTNEILLGKALKELPRENI 86 (249)
Q Consensus 38 ~~~~~~~~~~l~~A~~~Gi~~~Dta---------~~Yg~--g~se~~lg~~l~~~~r~~~ 86 (249)
..+.++..++++..-++||..|+.+ ..||. -..++.+....+..++.++
T Consensus 21 ~f~~~~~~~i~~~L~~aGv~~IEvg~~~g~g~~s~~~g~~~~~~~e~i~~~~~~~~~~~~ 80 (337)
T PRK08195 21 QYTLEQVRAIARALDAAGVPVIEVTHGDGLGGSSFNYGFGAHTDEEYIEAAAEVVKQAKI 80 (337)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEeecCCCCCCccccCCCCCCCHHHHHHHHHHhCCCCEE
Confidence 3578999999999999999999994 22332 1345666555553333333
No 125
>PRK08776 cystathionine gamma-synthase; Provisional
Probab=57.43 E-value=60 Score=29.46 Aligned_cols=76 Identities=12% Similarity=0.089 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHcCCeeEEEcCCCCHHHHHHHhhc-CCceEEeeecCccccchh-hhHHHHHHHhCCcEEecccCcccc
Q 025707 143 ETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAV-HPITAVQLEWSLWARDIE-NEIVPLCRELGIGIVPYCPLGRGF 218 (249)
Q Consensus 143 ~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~-~~~~~~q~~~n~~~~~~~-~~~~~~~~~~gi~v~a~spl~~G~ 218 (249)
..+..++.+.+.+.++.+-+...+.+.+++++.. .++.++..+.|+.-.-.+ .++.+.|+++|+.++.=..++.+.
T Consensus 111 ~t~~~~~~~~~~~g~~v~~v~~~d~~~l~~~i~~~tklV~l~~P~NPtG~v~dl~~I~~la~~~gi~vIvD~a~a~~~ 188 (405)
T PRK08776 111 GSWRLFNALAKKGHFALITADLTDPRSLADALAQSPKLVLIETPSNPLLRITDLRFVIEAAHKVGALTVVDNTFLSPA 188 (405)
T ss_pred HHHHHHHHHHHhcCcEEEEECCCCHHHHHHhcCcCCeEEEEECCCCCCCccCCHHHHHHHHHHcCCEEEEECCCcccc
Confidence 3444455554455566666665677788777643 445566667776544323 789999999999999877776554
No 126
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=57.39 E-value=1.3e+02 Score=26.27 Aligned_cols=110 Identities=15% Similarity=0.067 Sum_probs=59.1
Q ss_pred CHHHHHHHHHHHHHHcCCCceeEEEeecCCCCC-CHHHHHHHHHHHHHcCCeeEEEcCC---------CCHHHHHHHhhc
Q 025707 107 TPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSV-PIEETIGEMKKLVEEGKIKYIGLSE---------ASPDTIRRAHAV 176 (249)
Q Consensus 107 s~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~-~~~~~~~~l~~l~~~G~ir~iGvs~---------~~~~~l~~~~~~ 176 (249)
+.+.+.+.++......++ .-+.+-.-++.. ....+.+.++.+++.+.|+.|.+.+ .+.+.++.+.+.
T Consensus 120 ~~~e~~~~i~~i~~~~~I---~~VilSGGDPl~~~~~~L~~ll~~l~~i~~v~~iri~Tr~~v~~p~rit~ell~~L~~~ 196 (321)
T TIGR03822 120 SPAELDAAFAYIADHPEI---WEVILTGGDPLVLSPRRLGDIMARLAAIDHVKIVRFHTRVPVADPARVTPALIAALKTS 196 (321)
T ss_pred CHHHHHHHHHHHHhCCCc---cEEEEeCCCcccCCHHHHHHHHHHHHhCCCccEEEEeCCCcccChhhcCHHHHHHHHHc
Confidence 344555555443333333 334454434432 2356777778888888776555533 233344444443
Q ss_pred CCceEEeeecCcccc--chhhhHHHHHHHhCCcEEecccCccccc
Q 025707 177 HPITAVQLEWSLWAR--DIENEIVPLCRELGIGIVPYCPLGRGFF 219 (249)
Q Consensus 177 ~~~~~~q~~~n~~~~--~~~~~~~~~~~~~gi~v~a~spl~~G~l 219 (249)
.....+.++.|-... ......++.+++.||.+...+++..|.-
T Consensus 197 g~~v~i~l~~~h~~el~~~~~~ai~~L~~~Gi~v~~q~vLl~gvN 241 (321)
T TIGR03822 197 GKTVYVALHANHARELTAEARAACARLIDAGIPMVSQSVLLRGVN 241 (321)
T ss_pred CCcEEEEecCCChhhcCHHHHHHHHHHHHcCCEEEEEeeEeCCCC
Confidence 322234444432111 1126678888889999999998888753
No 127
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=57.28 E-value=35 Score=31.75 Aligned_cols=149 Identities=16% Similarity=0.139 Sum_probs=89.7
Q ss_pred CCcccCcceeecccccCCCCCCCCHHHHHHHHHHHHHcCCCeE--eCCCCcCC--------CchHHHHHHHHHc---CCC
Q 025707 17 QGLEVSKLGYGCMSLSGCYNSPLSEEDGISIIKHAFSKGITFF--DTADKYGP--------YTNEILLGKALKE---LPR 83 (249)
Q Consensus 17 ~g~~vs~lg~Gt~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~--Dta~~Yg~--------g~se~~lg~~l~~---~~r 83 (249)
|...-|++.+-...+-..|.+ .++ .+...+.|+..+ =||-.|.. |.-|.++.-+-+. ..+
T Consensus 85 th~~APRVliaNs~lVp~wa~---~e~----f~~l~~~Gl~mYGQMTAGsw~YIG~QGIvqGTyeT~~~aark~f~~~L~ 157 (545)
T TIGR01228 85 THENAPRVLIANSNLVPHWAD---WEH----FHELEAKGLMMYGQMTAGSWIYIGTQGILQGTYETFAELARQHFGGSLK 157 (545)
T ss_pred CCCCCCeEEEEcCccccCCCC---HHH----HHHHHHcccccccCccccceEEEcCcceeecHHHHHHHHHHHhcCCCCc
Confidence 344455555543333333432 233 344556677655 35544421 4555555544443 246
Q ss_pred CCeEEEecccccccCCc---------ccccCCCHHHHHHHHHHHHHHcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHc
Q 025707 84 ENIQVATKFGFVELGFT---------SVIVKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEE 154 (249)
Q Consensus 84 ~~~~I~tK~~~~~~~~~---------~~~~~~s~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~ 154 (249)
..+++++-++-.....+ ....+.+++.| -+|+.+.|+|.+ ..++++++...++.+++
T Consensus 158 G~~~lTaGLGGMgGAQPlA~~mag~v~i~vEvd~~ri-------~kR~~~gyld~~-------~~~ldeal~~~~~a~~~ 223 (545)
T TIGR01228 158 GKWVLTAGLGGMGGAQPLAVTMNGGVSIAVEVDESRI-------DKRLETKYCDEQ-------TDSLDEALARAEEAKAE 223 (545)
T ss_pred eeEEEEeCCCccccccHHHHHHcCceEEEEEECHHHH-------HHHHhcCcceeE-------cCCHHHHHHHHHHHHHc
Confidence 77888888875543211 01122334444 457777888865 35689999999999999
Q ss_pred CCeeEEEcCCCCHHHHHHHhhc---CCceEEeeec
Q 025707 155 GKIKYIGLSEASPDTIRRAHAV---HPITAVQLEW 186 (249)
Q Consensus 155 G~ir~iGvs~~~~~~l~~~~~~---~~~~~~q~~~ 186 (249)
|+..+||+-..-.+.++++.+. ..+..-|.+.
T Consensus 224 ~~~~SIg~~GNaadv~~~l~~r~i~pDlvtDQTSa 258 (545)
T TIGR01228 224 GKPISIGLLGNAAEVLPELLKRGVVPDVVTDQTSA 258 (545)
T ss_pred CCceEEEeeccHHHHHHHHHHcCCCCCCcCCCCcc
Confidence 9999999999988999888875 2344455543
No 128
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=57.23 E-value=1.2e+02 Score=25.57 Aligned_cols=96 Identities=19% Similarity=0.126 Sum_probs=58.8
Q ss_pred CCHHHHHHHHHHHHHHcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHc-CCeeEEEcCCCCHHHHHHHhhcCCceEEee
Q 025707 106 GTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEE-GKIKYIGLSEASPDTIRRAHAVHPITAVQL 184 (249)
Q Consensus 106 ~s~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~-G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~ 184 (249)
++.+.. ..+-+.|.++|+++|++-+ |.. -+.-++.++++.+. ..++..+++..+.+.++.+.+. .++.+.+
T Consensus 17 ~~~~~k-~~i~~~L~~~Gv~~iE~g~---p~~---~~~~~e~~~~l~~~~~~~~~~~~~r~~~~~v~~a~~~-g~~~i~i 88 (259)
T cd07939 17 FSREEK-LAIARALDEAGVDEIEVGI---PAM---GEEEREAIRAIVALGLPARLIVWCRAVKEDIEAALRC-GVTAVHI 88 (259)
T ss_pred CCHHHH-HHHHHHHHHcCCCEEEEec---CCC---CHHHHHHHHHHHhcCCCCEEEEeccCCHHHHHHHHhC-CcCEEEE
Confidence 445544 4555669999999999963 221 12335566666663 3477777877788888887765 3344433
Q ss_pred ec--Cccc------cc------hhhhHHHHHHHhCCcEE
Q 025707 185 EW--SLWA------RD------IENEIVPLCRELGIGIV 209 (249)
Q Consensus 185 ~~--n~~~------~~------~~~~~~~~~~~~gi~v~ 209 (249)
.+ |..+ .. .....+++|+++|+.|.
T Consensus 89 ~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~ 127 (259)
T cd07939 89 SIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVS 127 (259)
T ss_pred EEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEE
Confidence 22 2211 00 11468889999999765
No 129
>PRK00730 rnpA ribonuclease P; Reviewed
Probab=57.15 E-value=77 Score=24.26 Aligned_cols=63 Identities=11% Similarity=0.185 Sum_probs=44.9
Q ss_pred CCCCeEEEecccccccCCcccccCCCHHHHHHHHHHHHHHcC--CCceeEEEeecCCCCCCHHHHHHHHHHHHHc
Q 025707 82 PRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLD--VEYIDLYYQHRVDTSVPIEETIGEMKKLVEE 154 (249)
Q Consensus 82 ~r~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~~Lg--~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~ 154 (249)
+|=-+.|+-|++.- ..+..|++.+.++++... +...|++++.......+..++...|..+..+
T Consensus 46 ~RlG~sVSKKvg~A----------V~RNRiKR~lREafR~~~~~l~g~DiVviaR~~~~~~f~~L~~~l~~~~~~ 110 (138)
T PRK00730 46 CKVGITVSKKFGKA----------HQRNRFKRIVREAFRHVRHNLPGCQIVVSPKGNSQPDFLKLLQDFLQQIPE 110 (138)
T ss_pred ceEEEEEecccccc----------hhHHHHHHHHHHHHHHhhcccCCceEEEEeccccCCCHHHHHHHHHHHHHH
Confidence 45567888887632 346778888888877663 3578999999887767777777777666654
No 130
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=56.71 E-value=55 Score=26.79 Aligned_cols=52 Identities=19% Similarity=0.290 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCC
Q 025707 109 EYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEAS 166 (249)
Q Consensus 109 ~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~ 166 (249)
..+.+.+++.++.+|. .+.++ .+...+.++..+.++++.++| +..|-++..+
T Consensus 14 ~~~~~g~~~~a~~~g~-~~~~~----~~~~~d~~~q~~~i~~~i~~~-~d~Iiv~~~~ 65 (257)
T PF13407_consen 14 QQVIKGAKAAAKELGY-EVEIV----FDAQNDPEEQIEQIEQAISQG-VDGIIVSPVD 65 (257)
T ss_dssp HHHHHHHHHHHHHHTC-EEEEE----EESTTTHHHHHHHHHHHHHTT-ESEEEEESSS
T ss_pred HHHHHHHHHHHHHcCC-EEEEe----CCCCCCHHHHHHHHHHHHHhc-CCEEEecCCC
Confidence 4577888888888886 33333 333444577778888888776 6766665444
No 131
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=56.68 E-value=1.4e+02 Score=26.18 Aligned_cols=130 Identities=15% Similarity=0.125 Sum_probs=73.7
Q ss_pred CCCHHHHHHHHHHHHHcCCCeEeCCCCcCCC----chHHHHHHHHHcCC-CCCeEEEecccccccCCcccccCCCHHHHH
Q 025707 38 PLSEEDGISIIKHAFSKGITFFDTADKYGPY----TNEILLGKALKELP-RENIQVATKFGFVELGFTSVIVKGTPEYVR 112 (249)
Q Consensus 38 ~~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~g----~se~~lg~~l~~~~-r~~~~I~tK~~~~~~~~~~~~~~~s~~~i~ 112 (249)
..+.++..++++.+.+.|+..|--+. |.. +-.+++ +.+++.. -.++.|+|-.. .+.
T Consensus 44 ~ls~eei~~li~~~~~~Gv~~I~~tG--GEPllr~dl~~li-~~i~~~~~l~~i~itTNG~----------------ll~ 104 (329)
T PRK13361 44 VLSLEELAWLAQAFTELGVRKIRLTG--GEPLVRRGCDQLV-ARLGKLPGLEELSLTTNGS----------------RLA 104 (329)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEC--cCCCccccHHHHH-HHHHhCCCCceEEEEeChh----------------HHH
Confidence 36889999999999999998886542 211 122222 2233221 12455655421 122
Q ss_pred HHHHHHHHHcCCCceeEEEeecCCCC--------CCHHHHHHHHHHHHHcCC----eeEEEcCCCCHHHHHHHhhc---C
Q 025707 113 SCCEASLRRLDVEYIDLYYQHRVDTS--------VPIEETIGEMKKLVEEGK----IKYIGLSEASPDTIRRAHAV---H 177 (249)
Q Consensus 113 ~~~~~sL~~Lg~d~iDl~~lh~~~~~--------~~~~~~~~~l~~l~~~G~----ir~iGvs~~~~~~l~~~~~~---~ 177 (249)
+ .-+.|...|++++- +-++..++. ..++.+++.++.+++.|. |..+.+...+.+.+.++++. .
T Consensus 105 ~-~~~~L~~aGl~~v~-ISlDs~~~e~~~~i~~~g~~~~vl~~i~~~~~~Gi~~v~in~v~~~g~N~~ei~~~~~~~~~~ 182 (329)
T PRK13361 105 R-FAAELADAGLKRLN-ISLDTLRPELFAALTRNGRLERVIAGIDAAKAAGFERIKLNAVILRGQNDDEVLDLVEFCRER 182 (329)
T ss_pred H-HHHHHHHcCCCeEE-EEeccCCHHHhhhhcCCCCHHHHHHHHHHHHHcCCCceEEEEEEECCCCHHHHHHHHHHHHhc
Confidence 2 33456677887765 355555432 346789999999999885 33444455666666555443 3
Q ss_pred CceEEeeecCc
Q 025707 178 PITAVQLEWSL 188 (249)
Q Consensus 178 ~~~~~q~~~n~ 188 (249)
++++.-+++.+
T Consensus 183 gi~~~~ie~mP 193 (329)
T PRK13361 183 GLDIAFIEEMP 193 (329)
T ss_pred CCeEEEEeccc
Confidence 44443333444
No 132
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=56.55 E-value=1.3e+02 Score=25.88 Aligned_cols=153 Identities=12% Similarity=0.061 Sum_probs=90.2
Q ss_pred CHHHHHHHHHHHHHcC-CCeEeC---CCCc-----CCCchHHHHHHHHHcCCC-CCeEEEecccccccCCcccccCCCHH
Q 025707 40 SEEDGISIIKHAFSKG-ITFFDT---ADKY-----GPYTNEILLGKALKELPR-ENIQVATKFGFVELGFTSVIVKGTPE 109 (249)
Q Consensus 40 ~~~~~~~~l~~A~~~G-i~~~Dt---a~~Y-----g~g~se~~lg~~l~~~~r-~~~~I~tK~~~~~~~~~~~~~~~s~~ 109 (249)
+.++..++.+.+.+.| +..||- +++. ..+...+.+-+.++...+ -++-|..|+.... +
T Consensus 102 ~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~------------~ 169 (301)
T PRK07259 102 TEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVVKVPVIVKLTPNV------------T 169 (301)
T ss_pred CHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEEcCCCc------------h
Confidence 5788889999999998 999976 2221 122345666666665221 2567888876321 1
Q ss_pred HHHHHHHHHHHHcCCCceeEEE-eecCC--CC----------------CCHHHHHHHHHHHHHcCCeeEEEcCCC-CHHH
Q 025707 110 YVRSCCEASLRRLDVEYIDLYY-QHRVD--TS----------------VPIEETIGEMKKLVEEGKIKYIGLSEA-SPDT 169 (249)
Q Consensus 110 ~i~~~~~~sL~~Lg~d~iDl~~-lh~~~--~~----------------~~~~~~~~~l~~l~~~G~ir~iGvs~~-~~~~ 169 (249)
.+ ..+-+.|+..|+|.+++.- ++... .. ....-.++.+.++++.=.+--||+... +++.
T Consensus 170 ~~-~~~a~~l~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~~~~ipvi~~GGI~~~~d 248 (301)
T PRK07259 170 DI-VEIAKAAEEAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQVYQAVDIPIIGMGGISSAED 248 (301)
T ss_pred hH-HHHHHHHHHcCCCEEEEEccccccccccccCceeecCCcCccCCcCcccccHHHHHHHHHhCCCCEEEECCCCCHHH
Confidence 22 2344567788988877642 11110 00 000124666677776656888888875 7788
Q ss_pred HHHHhhcCCceEEeeecCcc-ccc----hhhhHHHHHHHhCC
Q 025707 170 IRRAHAVHPITAVQLEWSLW-ARD----IENEIVPLCRELGI 206 (249)
Q Consensus 170 l~~~~~~~~~~~~q~~~n~~-~~~----~~~~~~~~~~~~gi 206 (249)
..+++.. ..+.+|+---++ ++. ...++-+++.++|.
T Consensus 249 a~~~l~a-GAd~V~igr~ll~~P~~~~~i~~~l~~~~~~~g~ 289 (301)
T PRK07259 249 AIEFIMA-GASAVQVGTANFYDPYAFPKIIEGLEAYLDKYGI 289 (301)
T ss_pred HHHHHHc-CCCceeEcHHHhcCcHHHHHHHHHHHHHHHHcCC
Confidence 8888864 478888732222 121 12566677777765
No 133
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=56.23 E-value=1.3e+02 Score=27.59 Aligned_cols=105 Identities=16% Similarity=0.161 Sum_probs=56.3
Q ss_pred CCCcCCCchHHHHHHHHHc----CCCCCeEEEecccccccCCcccccCCCHHHHHHHHHHHHHHcCCC-----ceeEEEe
Q 025707 62 ADKYGPYTNEILLGKALKE----LPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLDVE-----YIDLYYQ 132 (249)
Q Consensus 62 a~~Yg~g~se~~lg~~l~~----~~r~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~~Lg~d-----~iDl~~l 132 (249)
.-.|| .|+-|-+++++ .+.+=++|.|-.- ++.+-+.++...+++.-. .+.++.+
T Consensus 64 d~V~G---g~~~L~~ai~~~~~~~~p~~I~v~ttC~--------------~~iiGdDi~~v~~~~~~~~~~~~~~~vi~v 126 (435)
T cd01974 64 AAVFG---GQNNLIDGLKNAYAVYKPDMIAVSTTCM--------------AEVIGDDLNAFIKNAKNKGSIPADFPVPFA 126 (435)
T ss_pred ceEEC---cHHHHHHHHHHHHHhcCCCEEEEeCCch--------------HhhhhccHHHHHHHHHHhccCCCCCeEEEe
Confidence 34677 57788888876 2333355555432 333444444444444322 4678888
Q ss_pred ecCCCCCC----HHHHHHHHH-HHH-------HcCCeeEEEcCC--CC-HHHHHHHhhcCCceEEe
Q 025707 133 HRVDTSVP----IEETIGEMK-KLV-------EEGKIKYIGLSE--AS-PDTIRRAHAVHPITAVQ 183 (249)
Q Consensus 133 h~~~~~~~----~~~~~~~l~-~l~-------~~G~ir~iGvs~--~~-~~~l~~~~~~~~~~~~q 183 (249)
+.|.-.-. .+.++++|- ++. +.+.|.-||-.+ .+ .+.+.++++...+.++.
T Consensus 127 ~tpgf~gs~~~G~~~a~~al~~~l~~~~~~~~~~~~VNli~~~~~~~d~~~el~~lL~~~Gl~~~~ 192 (435)
T cd01974 127 NTPSFVGSHITGYDNMVKGILTHLTEGSGGAGKNGKLNIIPGFDTYAGNMREIKRLLELMGVDYTI 192 (435)
T ss_pred cCCCCccCHHHHHHHHHHHHHHHHhcccCCCCCCCeEEEECCCCCCcchHHHHHHHHHHcCCCEEE
Confidence 87755422 233444443 222 234566665222 22 57788888876666654
No 134
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=55.88 E-value=72 Score=29.00 Aligned_cols=82 Identities=9% Similarity=0.041 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHcCCeeEEEcCCCCHHHHHHHhh--cCCceEEeeecCccccchh-hhHHHHHHHhCCcEEecccCccc
Q 025707 141 IEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHA--VHPITAVQLEWSLWARDIE-NEIVPLCRELGIGIVPYCPLGRG 217 (249)
Q Consensus 141 ~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~--~~~~~~~q~~~n~~~~~~~-~~~~~~~~~~gi~v~a~spl~~G 217 (249)
...++..++.+.++.-|....+-..+.+.+.+++. ..++.++..+-|+..+-.+ ..+.+.|+++|+.++.=.+|+.+
T Consensus 112 YG~t~~~~~~~l~~~gi~~~~~d~~~~~~~~~~~~~~~tk~v~lEtPsNP~l~v~DI~~i~~~A~~~g~~vvVDNTfatP 191 (396)
T COG0626 112 YGGTYRLFEKILQKFGVEVTFVDPGDDEALEAAIKEPNTKLVFLETPSNPLLEVPDIPAIARLAKAYGALVVVDNTFATP 191 (396)
T ss_pred cchHHHHHHHHHHhcCeEEEEECCCChHHHHHHhcccCceEEEEeCCCCcccccccHHHHHHHHHhcCCEEEEECCcccc
Confidence 66788888888888888888888877766666554 5778889999999876544 88999999999999999999998
Q ss_pred ccCCC
Q 025707 218 FFGGK 222 (249)
Q Consensus 218 ~l~g~ 222 (249)
++...
T Consensus 192 ~~q~P 196 (396)
T COG0626 192 VLQRP 196 (396)
T ss_pred cccCh
Confidence 88776
No 135
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=55.86 E-value=1.7e+02 Score=27.02 Aligned_cols=90 Identities=17% Similarity=0.121 Sum_probs=55.4
Q ss_pred HHHHHHHcCCCceeEEEeecCCC--------CCCHHHHHHHHHHHHHcCCeeE----EEcCCCCHHHHHHHhhc---CCc
Q 025707 115 CEASLRRLDVEYIDLYYQHRVDT--------SVPIEETIGEMKKLVEEGKIKY----IGLSEASPDTIRRAHAV---HPI 179 (249)
Q Consensus 115 ~~~sL~~Lg~d~iDl~~lh~~~~--------~~~~~~~~~~l~~l~~~G~ir~----iGvs~~~~~~l~~~~~~---~~~ 179 (249)
+=+.+++.|+.++-+=+ ...++ ....+++.++++.+++.|.--. +|+-..+.+.+++.++. .++
T Consensus 289 ~l~~l~~aG~~~v~iGi-ES~s~~~L~~~~K~~~~~~~~~~i~~~~~~Gi~v~~~~IiGlPget~e~~~~ti~~~~~l~~ 367 (472)
T TIGR03471 289 TLKVMKENGLRLLLVGY-ESGDQQILKNIKKGLTVEIARRFTRDCHKLGIKVHGTFILGLPGETRETIRKTIDFAKELNP 367 (472)
T ss_pred HHHHHHHcCCCEEEEcC-CCCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCeEEEEEEEeCCCCCHHHHHHHHHHHHhcCC
Confidence 44556677877654322 22211 2346778888999999887544 26667777777665543 334
Q ss_pred eEEeeecCccccchhhhHHHHHHHhCCc
Q 025707 180 TAVQLEWSLWARDIENEIVPLCRELGIG 207 (249)
Q Consensus 180 ~~~q~~~n~~~~~~~~~~~~~~~~~gi~ 207 (249)
+.++ ++++.+-....+.+.+++.|.-
T Consensus 368 ~~~~--~~~l~P~PGT~l~~~~~~~g~~ 393 (472)
T TIGR03471 368 HTIQ--VSLAAPYPGTELYDQAKQNGWI 393 (472)
T ss_pred Ccee--eeecccCCCcHHHHHHHHCCCc
Confidence 4333 4455554457788888888764
No 136
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=55.34 E-value=88 Score=28.58 Aligned_cols=103 Identities=17% Similarity=0.272 Sum_probs=70.1
Q ss_pred HHHHHHHHcCCCeEeCCCCcCC-CchHHHHHHHHHcCCCCCeEEEecccccccCCcccccCCCHHHHHHHHHHHHHHcCC
Q 025707 46 SIIKHAFSKGITFFDTADKYGP-YTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLDV 124 (249)
Q Consensus 46 ~~l~~A~~~Gi~~~Dta~~Yg~-g~se~~lg~~l~~~~r~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~~Lg~ 124 (249)
.+|+.+++.| .+-..-.||+ |.--++|++.+...-.-++.-.+=+ ..+-+.+++.++++.+.++.
T Consensus 37 ~~lrr~v~~~--~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv------------~~gvkdlr~i~e~a~~~~~~ 102 (436)
T COG2256 37 KPLRRAVEAG--HLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAV------------TSGVKDLREIIEEARKNRLL 102 (436)
T ss_pred chHHHHHhcC--CCceeEEECCCCCCHHHHHHHHHHhhCCceEEeccc------------cccHHHHHHHHHHHHHHHhc
Confidence 6788889887 4455568885 7788999999976222222211111 13467899999999888875
Q ss_pred CceeEEEe---ecCCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCCH
Q 025707 125 EYIDLYYQ---HRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASP 167 (249)
Q Consensus 125 d~iDl~~l---h~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~ 167 (249)
.+==++++ |+.+. ..-++|--.++.|.|-.||.++-+|
T Consensus 103 gr~tiLflDEIHRfnK-----~QQD~lLp~vE~G~iilIGATTENP 143 (436)
T COG2256 103 GRRTILFLDEIHRFNK-----AQQDALLPHVENGTIILIGATTENP 143 (436)
T ss_pred CCceEEEEehhhhcCh-----hhhhhhhhhhcCCeEEEEeccCCCC
Confidence 44445555 44422 3456788889999999999998655
No 137
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=55.32 E-value=1.5e+02 Score=26.16 Aligned_cols=95 Identities=13% Similarity=0.184 Sum_probs=52.8
Q ss_pred HHHHHcCCCceeEEEeec-CCC-CCCHHHHHHHHHHHHHcCCeeE-EEcCCC---CHHHHHHHhhcCC-ceEEeeecCcc
Q 025707 117 ASLRRLDVEYIDLYYQHR-VDT-SVPIEETIGEMKKLVEEGKIKY-IGLSEA---SPDTIRRAHAVHP-ITAVQLEWSLW 189 (249)
Q Consensus 117 ~sL~~Lg~d~iDl~~lh~-~~~-~~~~~~~~~~l~~l~~~G~ir~-iGvs~~---~~~~l~~~~~~~~-~~~~q~~~n~~ 189 (249)
+.-+.+|.|+||+-+.-. |+. ....++....++...+.=.+-- |.-|.. +++.++++++... -.+.-..-|.
T Consensus 83 ~q~~~~GAd~Idl~~~s~dp~~~d~~~~e~~~~Vk~V~eavd~PL~Id~s~n~~kD~evleaale~~~g~~pLInSat~- 161 (319)
T PRK04452 83 KCVEEYGADMITLHLISTDPNGKDKSPEEAAKTVEEVLQAVDVPLIIGGSGNPEKDAEVLEKVAEAAEGERCLLGSAEE- 161 (319)
T ss_pred HHHHHhCCCEEEEECCCCCcccccchHHHHHHHHHHHHHhCCCCEEEecCCCCCCCHHHHHHHHHHhCCCCCEEEECCH-
Confidence 334588999999876533 322 1223333333333333322222 555532 7888888887622 1112122221
Q ss_pred ccchhhhHHHHHHHhCCcEEecccC
Q 025707 190 ARDIENEIVPLCRELGIGIVPYCPL 214 (249)
Q Consensus 190 ~~~~~~~~~~~~~~~gi~v~a~spl 214 (249)
..-+.+.+.|+++|..|++.+|.
T Consensus 162 --en~~~i~~lA~~y~~~Vva~s~~ 184 (319)
T PRK04452 162 --DNYKKIAAAAMAYGHAVIAWSPL 184 (319)
T ss_pred --HHHHHHHHHHHHhCCeEEEEcHH
Confidence 11277999999999999998864
No 138
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=55.19 E-value=1.5e+02 Score=26.03 Aligned_cols=121 Identities=15% Similarity=0.107 Sum_probs=69.1
Q ss_pred CCHHHHHHHHHHHHHc-CCCeEeCCCCcCCC--chHHHHHHHH---HcCC-CCCeEEEecccccccCCcccccCCCHHHH
Q 025707 39 LSEEDGISIIKHAFSK-GITFFDTADKYGPY--TNEILLGKAL---KELP-RENIQVATKFGFVELGFTSVIVKGTPEYV 111 (249)
Q Consensus 39 ~~~~~~~~~l~~A~~~-Gi~~~Dta~~Yg~g--~se~~lg~~l---~~~~-r~~~~I~tK~~~~~~~~~~~~~~~s~~~i 111 (249)
.+.++..++++..-+. ||+-+--+. |+- .+...+.+.+ +..+ ...+-|.|+.... .+..+
T Consensus 119 l~~~e~~~~i~~i~~~~~I~~VilSG--GDPl~~~~~~L~~ll~~l~~i~~v~~iri~Tr~~v~-----------~p~ri 185 (321)
T TIGR03822 119 LSPAELDAAFAYIADHPEIWEVILTG--GDPLVLSPRRLGDIMARLAAIDHVKIVRFHTRVPVA-----------DPARV 185 (321)
T ss_pred CCHHHHHHHHHHHHhCCCccEEEEeC--CCcccCCHHHHHHHHHHHHhCCCccEEEEeCCCccc-----------Chhhc
Confidence 4667888888877644 887653322 211 1223333333 3222 3345677765322 23444
Q ss_pred HHHHHHHHHHcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCCeeEE------EcCCCCHHHHHHHhh
Q 025707 112 RSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYI------GLSEASPDTIRRAHA 175 (249)
Q Consensus 112 ~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~i------Gvs~~~~~~l~~~~~ 175 (249)
.+.+-+.|++.|. . ..+.+|......-.++++++++.|++.|..-.+ |+ |.+.+.+.++.+
T Consensus 186 t~ell~~L~~~g~-~-v~i~l~~~h~~el~~~~~~ai~~L~~~Gi~v~~q~vLl~gv-Nd~~~~l~~l~~ 252 (321)
T TIGR03822 186 TPALIAALKTSGK-T-VYVALHANHARELTAEARAACARLIDAGIPMVSQSVLLRGV-NDDPETLAALMR 252 (321)
T ss_pred CHHHHHHHHHcCC-c-EEEEecCCChhhcCHHHHHHHHHHHHcCCEEEEEeeEeCCC-CCCHHHHHHHHH
Confidence 4555567777774 2 357778754444457899999999999963211 33 566666665543
No 139
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=55.15 E-value=1.1e+02 Score=24.80 Aligned_cols=133 Identities=14% Similarity=0.049 Sum_probs=74.5
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCC----------CCcCCC--chHHHHHHHHHcCC-CCCeEEEecccccccCCcccccCC
Q 025707 40 SEEDGISIIKHAFSKGITFFDTA----------DKYGPY--TNEILLGKALKELP-RENIQVATKFGFVELGFTSVIVKG 106 (249)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~Dta----------~~Yg~g--~se~~lg~~l~~~~-r~~~~I~tK~~~~~~~~~~~~~~~ 106 (249)
+.++..+..+.+.++|+..+|-- ..||.. ..-+.+-+.++... .-.+-|+-|+...+ +.
T Consensus 65 ~~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~~~v~vk~r~~~--------~~ 136 (231)
T cd02801 65 DPETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVPIPVTVKIRLGW--------DD 136 (231)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcCCCEEEEEeecc--------CC
Confidence 57888889999999999999853 335421 23344444444311 11145566654322 01
Q ss_pred CHHHHHHHHHHHHHHcCCCceeEEEeecCCCCC--CHHHHHHHHHHHHHcCCeeEEEcCCC-CHHHHHHHhhcCCceEEe
Q 025707 107 TPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSV--PIEETIGEMKKLVEEGKIKYIGLSEA-SPDTIRRAHAVHPITAVQ 183 (249)
Q Consensus 107 s~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~--~~~~~~~~l~~l~~~G~ir~iGvs~~-~~~~l~~~~~~~~~~~~q 183 (249)
.+...+ +-+.|+..|+++ +.+|...... .-...|+.+.++++.-.+.-++.... +.+.+.++++....+.++
T Consensus 137 -~~~~~~-~~~~l~~~Gvd~---i~v~~~~~~~~~~~~~~~~~~~~i~~~~~ipvi~~Ggi~~~~d~~~~l~~~gad~V~ 211 (231)
T cd02801 137 -EEETLE-LAKALEDAGASA---LTVHGRTREQRYSGPADWDYIAEIKEAVSIPVIANGDIFSLEDALRCLEQTGVDGVM 211 (231)
T ss_pred -chHHHH-HHHHHHHhCCCE---EEECCCCHHHcCCCCCCHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHhcCCCEEE
Confidence 112222 333455667644 5667653211 11124666777777766776666654 677788877766677777
Q ss_pred ee
Q 025707 184 LE 185 (249)
Q Consensus 184 ~~ 185 (249)
+-
T Consensus 212 ig 213 (231)
T cd02801 212 IG 213 (231)
T ss_pred Ec
Confidence 64
No 140
>PRK12928 lipoyl synthase; Provisional
Probab=54.91 E-value=1.4e+02 Score=25.79 Aligned_cols=77 Identities=17% Similarity=0.208 Sum_probs=48.6
Q ss_pred CCHHHHHHHHHHHHHcC---CeeE---EEcCCCCHHHHHHHhhc---CCceEEee-ecCc-------c----ccchhhhH
Q 025707 139 VPIEETIGEMKKLVEEG---KIKY---IGLSEASPDTIRRAHAV---HPITAVQL-EWSL-------W----ARDIENEI 197 (249)
Q Consensus 139 ~~~~~~~~~l~~l~~~G---~ir~---iGvs~~~~~~l~~~~~~---~~~~~~q~-~~n~-------~----~~~~~~~~ 197 (249)
...++.++.++.+++.| .++. +|+ .-+.+.+.+.+.. .+++.+.+ +|.. + .+.....+
T Consensus 185 ~t~e~~le~l~~ak~~gp~i~~~s~iIvG~-GET~ed~~etl~~Lrel~~d~v~i~~Yl~p~~~~~~v~~~~~~~~f~~~ 263 (290)
T PRK12928 185 ADYQRSLDLLARAKELAPDIPTKSGLMLGL-GETEDEVIETLRDLRAVGCDRLTIGQYLRPSLAHLPVQRYWTPEEFEAL 263 (290)
T ss_pred CCHHHHHHHHHHHHHhCCCceecccEEEeC-CCCHHHHHHHHHHHHhcCCCEEEEEcCCCCCccCCceeeccCHHHHHHH
Confidence 34678899999999987 3332 477 5555555544433 45555444 3322 1 11222778
Q ss_pred HHHHHHhCCcEEecccCcc
Q 025707 198 VPLCRELGIGIVPYCPLGR 216 (249)
Q Consensus 198 ~~~~~~~gi~v~a~spl~~ 216 (249)
-+.+.+.|...++.+||-.
T Consensus 264 ~~~~~~~g~~~~~~~p~~r 282 (290)
T PRK12928 264 GQIARELGFSHVRSGPLVR 282 (290)
T ss_pred HHHHHHcCCceeEecCccc
Confidence 8889999999999999864
No 141
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=54.70 E-value=68 Score=27.32 Aligned_cols=77 Identities=16% Similarity=0.085 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHcCCCeEeCCCCcCCC-chH---HHHHHHHHcC-CCCCeEEEecccccccCCcccccCCCHHHHHHHH
Q 025707 41 EEDGISIIKHAFSKGITFFDTADKYGPY-TNE---ILLGKALKEL-PRENIQVATKFGFVELGFTSVIVKGTPEYVRSCC 115 (249)
Q Consensus 41 ~~~~~~~l~~A~~~Gi~~~Dta~~Yg~g-~se---~~lg~~l~~~-~r~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~~ 115 (249)
+++..++.+.|.++|..|+=||-.|+.+ -.. +.+-+.+++. ..++ +.-|..-.. .+.+...+-+
T Consensus 146 ee~i~~a~~~a~~aGADFVKTSTGf~~~gAt~edv~lm~~~i~~~~~~~~--vgIKAsGGI---------rt~~~A~~~i 214 (257)
T PRK05283 146 EALIRKASEIAIKAGADFIKTSTGKVPVNATLEAARIMLEVIRDMGVAKT--VGFKPAGGV---------RTAEDAAQYL 214 (257)
T ss_pred HHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHHHhcccCCC--eeEEccCCC---------CCHHHHHHHH
Confidence 3458899999999999999999999743 222 3333333310 0122 333432111 3578888889
Q ss_pred HHHHHHcCCCcee
Q 025707 116 EASLRRLDVEYID 128 (249)
Q Consensus 116 ~~sL~~Lg~d~iD 128 (249)
+..-+.||.++++
T Consensus 215 ~ag~~~lg~~~~~ 227 (257)
T PRK05283 215 ALADEILGADWAD 227 (257)
T ss_pred HHHHHHhChhhcC
Confidence 9999999988766
No 142
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=54.67 E-value=1.5e+02 Score=26.14 Aligned_cols=125 Identities=14% Similarity=0.101 Sum_probs=69.9
Q ss_pred HHHcCCCCCeEEEecccccccCCcccccCCCHHHHHHHHHHHHHHcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCC
Q 025707 77 ALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGK 156 (249)
Q Consensus 77 ~l~~~~r~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ 156 (249)
.+....|+++-++|++.......+-+.-..+ ..+.+++-..+++.|- +..+|.. +.++.....++.+..|+
T Consensus 16 ~lp~~s~~dvdlst~~~~~~l~~P~~inAM~-t~iN~~LA~~a~~~G~----~~~~~k~----~~e~~~~~~r~~~~~~l 86 (326)
T PRK05458 16 KCIVNSRSECDTSVTLGPRTFKLPVVPANMQ-TIIDEKIAEWLAENGY----FYIMHRF----DPEARIPFIKDMHEQGL 86 (326)
T ss_pred CCCCCCHHHcccceEECCcEecCcEEEeccc-chhHHHHHHHHHHcCC----EEEEecC----CHHHHHHHHHhcccccc
Confidence 3433578888889988633222111111223 3788999999999973 4667772 23444444455555677
Q ss_pred eeEEEcCC--CCHHHHHHHhhcC-CceEEeeecCccccchhhhHHHHHHHh--CCcEEe
Q 025707 157 IKYIGLSE--ASPDTIRRAHAVH-PITAVQLEWSLWARDIENEIVPLCREL--GIGIVP 210 (249)
Q Consensus 157 ir~iGvs~--~~~~~l~~~~~~~-~~~~~q~~~n~~~~~~~~~~~~~~~~~--gi~v~a 210 (249)
+-.++++. ...+.+.++++.. ..++++++...-+-....++++..+++ ++.|++
T Consensus 87 ~v~~~vg~~~~~~~~~~~Lv~ag~~~d~i~iD~a~gh~~~~~e~I~~ir~~~p~~~vi~ 145 (326)
T PRK05458 87 IASISVGVKDDEYDFVDQLAAEGLTPEYITIDIAHGHSDSVINMIQHIKKHLPETFVIA 145 (326)
T ss_pred EEEEEecCCHHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHHHHHhhCCCCeEEE
Confidence 55555543 2223444444432 347888865553322236666666665 466666
No 143
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=54.18 E-value=1e+02 Score=24.79 Aligned_cols=100 Identities=15% Similarity=0.166 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHcCCCceeEEEeecCC--CCCCHHHHHHHHHHHHHcCCeeEEEcCCCCH--HHHHHHhhcCCceEEeee
Q 025707 110 YVRSCCEASLRRLDVEYIDLYYQHRVD--TSVPIEETIGEMKKLVEEGKIKYIGLSEASP--DTIRRAHAVHPITAVQLE 185 (249)
Q Consensus 110 ~i~~~~~~sL~~Lg~d~iDl~~lh~~~--~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~--~~l~~~~~~~~~~~~q~~ 185 (249)
.....+...++..+... +-+.+--.+ .........+.++.|++.|- .+.+.++.. ..+..+ ...+++++=++
T Consensus 100 ~~~~~l~~~l~~~~~~~-~~lvlei~e~~~~~~~~~~~~~i~~l~~~G~--~ialddfg~~~~~~~~l-~~l~~d~iKld 175 (241)
T smart00052 100 DLVPRVLELLEETGLPP-QRLELEITESVLLDDDESAVATLQRLRELGV--RIALDDFGTGYSSLSYL-KRLPVDLLKID 175 (241)
T ss_pred hHHHHHHHHHHHcCCCH-HHEEEEEeChhhhcChHHHHHHHHHHHHCCC--EEEEeCCCCcHHHHHHH-HhCCCCeEEEC
Confidence 34566777777877642 222222222 12334456689999999998 677776644 233333 33457777666
Q ss_pred cCcccc--------chhhhHHHHHHHhCCcEEeccc
Q 025707 186 WSLWAR--------DIENEIVPLCRELGIGIVPYCP 213 (249)
Q Consensus 186 ~n~~~~--------~~~~~~~~~~~~~gi~v~a~sp 213 (249)
.+++.. .....++..|+..|+.|++-..
T Consensus 176 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~via~gV 211 (241)
T smart00052 176 KSFVRDLQTDPEDEAIVQSIIELAQKLGLQVVAEGV 211 (241)
T ss_pred HHHHhhhccChhHHHHHHHHHHHHHHCCCeEEEecC
Confidence 544321 1226788999999999997654
No 144
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=53.92 E-value=48 Score=29.95 Aligned_cols=82 Identities=11% Similarity=0.052 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHcCCeeEEEcCCCCHHHHHHHhhc-CCceEEeeecCccccchh-hhHHHHHHHhC-CcEEecccCccc
Q 025707 141 IEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAV-HPITAVQLEWSLWARDIE-NEIVPLCRELG-IGIVPYCPLGRG 217 (249)
Q Consensus 141 ~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~-~~~~~~q~~~n~~~~~~~-~~~~~~~~~~g-i~v~a~spl~~G 217 (249)
...+.+.++++....-|...=+...+.+.++++++. .+..+++.+-|+...-.+ ..+.+.|+++| +.++.=++++.+
T Consensus 104 Y~~t~~~~~~~l~~~gv~v~~~d~~d~~~l~~~l~~~t~~v~~EspsNP~l~v~Dl~~i~~~a~~~g~~~~vVDnT~atp 183 (386)
T PF01053_consen 104 YGGTYRLLEELLPRFGVEVTFVDPTDLEALEAALRPNTKLVFLESPSNPTLEVPDLEAIAKLAKEHGDILVVVDNTFATP 183 (386)
T ss_dssp SHHHHHHHHHCHHHTTSEEEEESTTSHHHHHHHHCTTEEEEEEESSBTTTTB---HHHHHHHHHHTTT-EEEEECTTTHT
T ss_pred cCcchhhhhhhhcccCcEEEEeCchhHHHHHhhccccceEEEEEcCCCcccccccHHHHHHHHHHhCCceEEeeccccce
Confidence 556777777766555666555566688888888764 567788888888766544 88999999999 999999999888
Q ss_pred ccCCC
Q 025707 218 FFGGK 222 (249)
Q Consensus 218 ~l~g~ 222 (249)
++...
T Consensus 184 ~~~~p 188 (386)
T PF01053_consen 184 YNQNP 188 (386)
T ss_dssp TTC-G
T ss_pred eeecc
Confidence 76654
No 145
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=53.87 E-value=1.3e+02 Score=25.41 Aligned_cols=168 Identities=15% Similarity=0.084 Sum_probs=84.3
Q ss_pred CcceeecccccCCCCCCCCHHHHHHHHHHHH-HcCCCeEeCCCCcCCCchHHHHHHHHHcCCCCCeEEEecccccccCCc
Q 025707 22 SKLGYGCMSLSGCYNSPLSEEDGISIIKHAF-SKGITFFDTADKYGPYTNEILLGKALKELPRENIQVATKFGFVELGFT 100 (249)
Q Consensus 22 s~lg~Gt~~~~~~~~~~~~~~~~~~~l~~A~-~~Gi~~~Dta~~Yg~g~se~~lg~~l~~~~r~~~~I~tK~~~~~~~~~ 100 (249)
|+|-+||..+. +.+ +++.|+ .+|-..+=+|----+-.....-...++.++++.+.+.-...
T Consensus 9 SRL~lGTgky~-------s~~----~m~~ai~aSg~evvTvalRR~~~~~~~~~~~~~~~i~~~~~~lLPNTa------- 70 (247)
T PF05690_consen 9 SRLILGTGKYP-------SPE----VMREAIEASGAEVVTVALRRVNLGSKPGGDNILDYIDRSGYTLLPNTA------- 70 (247)
T ss_dssp -SEEEE-STSS-------SHH----HHHHHHHHTT-SEEEEECCGSTTTS-TTCHHCCCCTTCCTSEEEEE-T-------
T ss_pred cceEEecCCCC-------CHH----HHHHHHHHhCCcEEEEEEecccCCCCCCCccHHHHhcccCCEECCcCC-------
Confidence 68999987543 234 444444 34777765552211100100011123334556665544332
Q ss_pred ccccCCCHHHHHHHHHHHHHHcCCCceeEEEeecCCCC-CCHHHHHHHHHHHHHcCCeeEEEcCCCCHHHHHHHhhcCCc
Q 025707 101 SVIVKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTS-VPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAVHPI 179 (249)
Q Consensus 101 ~~~~~~s~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~-~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~ 179 (249)
-..+.+...+..+-..+.++++.|=+=.+..+... .+.-+++++-+.|+++|-+- .=.++-++-..+++.+. +.
T Consensus 71 ---Gc~tA~EAv~~A~laRe~~~t~wIKLEVi~D~~~L~PD~~etl~Aae~Lv~eGF~V-lPY~~~D~v~akrL~d~-Gc 145 (247)
T PF05690_consen 71 ---GCRTAEEAVRTARLAREAFGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVV-LPYCTDDPVLAKRLEDA-GC 145 (247)
T ss_dssp ---T-SSHHHHHHHHHHHHHTTS-SEEEE--BS-TTT--B-HHHHHHHHHHHHHTT-EE-EEEE-S-HHHHHHHHHT-T-
T ss_pred ---CCCCHHHHHHHHHHHHHHcCCCeEEEEEeCCCCCcCCChhHHHHHHHHHHHCCCEE-eecCCCCHHHHHHHHHC-CC
Confidence 13567777788888889999988877666554442 45779999999999999754 33455666555555553 33
Q ss_pred eEEeeecCccccch----hhhHHHHHHHhCCcEEecc
Q 025707 180 TAVQLEWSLWARDI----ENEIVPLCRELGIGIVPYC 212 (249)
Q Consensus 180 ~~~q~~~n~~~~~~----~~~~~~~~~~~gi~v~a~s 212 (249)
.+++--=+++-... ...+--.+.+.+|+||.-.
T Consensus 146 aavMPlgsPIGSg~Gi~n~~~l~~i~~~~~vPvIvDA 182 (247)
T PF05690_consen 146 AAVMPLGSPIGSGRGIQNPYNLRIIIERADVPVIVDA 182 (247)
T ss_dssp SEBEEBSSSTTT---SSTHHHHHHHHHHGSSSBEEES
T ss_pred CEEEecccccccCcCCCCHHHHHHHHHhcCCcEEEeC
Confidence 33333223322110 1334444556688888643
No 146
>PLN00191 enolase
Probab=53.86 E-value=1.9e+02 Score=26.91 Aligned_cols=97 Identities=11% Similarity=0.082 Sum_probs=66.6
Q ss_pred CCHHHHHHHHHHHHHHcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCCeeEEE-cC-CCCHHHHHHHhhcCCceEEe
Q 025707 106 GTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIG-LS-EASPDTIRRAHAVHPITAVQ 183 (249)
Q Consensus 106 ~s~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iG-vs-~~~~~~l~~~~~~~~~~~~q 183 (249)
.+++...+-+.+.++++ ++.++..|-... -|+.+.+|.++..+.-+| =+ ..++..+.++++....++++
T Consensus 295 ~s~~e~i~~~~~L~~~y-----~I~~IEDPl~~~----D~eg~~~Lt~~~~ipIvgDE~~vtn~~~l~~~I~~~aad~i~ 365 (457)
T PLN00191 295 KSGDELIDLYKEFVSDY-----PIVSIEDPFDQD----DWEHWAKLTSLEDVQIVGDDLLVTNPKRVAKAIQEKACNALL 365 (457)
T ss_pred cCHHHHHHHHHHHhhcC-----CcEEEECCCCcc----cHHHHHHHHccCCCcEEccCcccCCHHHHHHHHHhCCCCEEE
Confidence 35666655555554433 567777774433 466777788887887666 22 36688999998887788888
Q ss_pred eecCccccc-hhhhHHHHHHHhCCcEEec
Q 025707 184 LEWSLWARD-IENEIVPLCRELGIGIVPY 211 (249)
Q Consensus 184 ~~~n~~~~~-~~~~~~~~~~~~gi~v~a~ 211 (249)
+..|-+-.- ...++.+.|+++|+.++..
T Consensus 366 iKl~qiGGITea~~~a~lA~~~G~~~~is 394 (457)
T PLN00191 366 LKVNQIGTVTESIEAVKMSKAAGWGVMTS 394 (457)
T ss_pred ecccccCCHHHHHHHHHHHHHCCCEEEeC
Confidence 877654321 1277999999999999764
No 147
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=53.72 E-value=1.6e+02 Score=26.08 Aligned_cols=98 Identities=17% Similarity=0.107 Sum_probs=55.4
Q ss_pred CCCCeEEEecccccccCCcccccCCCHHHHHHHHHHHHHHcCCCceeEE-Eeec-CCCC----CCHHHHHHHHHHHHHcC
Q 025707 82 PRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLDVEYIDLY-YQHR-VDTS----VPIEETIGEMKKLVEEG 155 (249)
Q Consensus 82 ~r~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~~Lg~d~iDl~-~lh~-~~~~----~~~~~~~~~l~~l~~~G 155 (249)
-..++.|..|+....... ...+.+... .+-+.|+.+|+|++++- -+|. +... .+........+++++.=
T Consensus 201 vG~d~~v~iRi~~~D~~~----~g~~~~e~~-~i~~~Le~~G~d~i~vs~g~~e~~~~~~~~~~~~~~~~~~~~~ik~~v 275 (353)
T cd02930 201 VGEDFIIIYRLSMLDLVE----GGSTWEEVV-ALAKALEAAGADILNTGIGWHEARVPTIATSVPRGAFAWATAKLKRAV 275 (353)
T ss_pred cCCCceEEEEecccccCC----CCCCHHHHH-HHHHHHHHcCCCEEEeCCCcCCCCCccccccCCchhhHHHHHHHHHhC
Confidence 345777888876543110 013444332 34456788898888872 2232 1111 11111234456667665
Q ss_pred CeeEEEcCC-CCHHHHHHHhhcCCceEEee
Q 025707 156 KIKYIGLSE-ASPDTIRRAHAVHPITAVQL 184 (249)
Q Consensus 156 ~ir~iGvs~-~~~~~l~~~~~~~~~~~~q~ 184 (249)
.+.-++... .+++.++++++....+.+++
T Consensus 276 ~iPVi~~G~i~~~~~a~~~i~~g~~D~V~~ 305 (353)
T cd02930 276 DIPVIASNRINTPEVAERLLADGDADMVSM 305 (353)
T ss_pred CCCEEEcCCCCCHHHHHHHHHCCCCChhHh
Confidence 666666655 47788888888877777766
No 148
>cd01297 D-aminoacylase D-aminoacylases (N-acyl-D-Amino acid amidohydrolases) catalyze the hydrolysis of N-acyl-D-amino acids to produce the corresponding D-amino acids, which are used as intermediates in the synthesis of pesticides, bioactive peptides, and antibiotics.
Probab=53.40 E-value=1.7e+02 Score=26.39 Aligned_cols=124 Identities=15% Similarity=0.107 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHcCCCeEeCCCCcCC--CchHHHHHHHHHcCCCCCeEEEecccccccCCcccccCCCHHHHHHHHHHH
Q 025707 41 EEDGISIIKHAFSKGITFFDTADKYGP--YTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEAS 118 (249)
Q Consensus 41 ~~~~~~~l~~A~~~Gi~~~Dta~~Yg~--g~se~~lg~~l~~~~r~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~~~~s 118 (249)
.++..++++.|++.|+.-|=+...|.. +.++..+-+.++...+-...|....-... ....+.+.+.++-+
T Consensus 166 ~~~~~~l~~~al~~Ga~g~~~~~~y~~~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~--------~~e~~av~~~~~~a 237 (415)
T cd01297 166 LAKMRELLREALEAGALGISTGLAYAPRLYAGTAELVALARVAARYGGVYQTHVRYEG--------DSILEALDELLRLG 237 (415)
T ss_pred HHHHHHHHHHHHHCCCeEEEcccccCCcccCCHHHHHHHHHHHHHcCCEEEEEECccc--------ccHHHHHHHHHHHH
Confidence 355677788899999988876666643 45777777777654444555665543111 01123344444333
Q ss_pred HHHcCCCceeEEEeecCCCC----CCHHHHHHHHHHHHHcCCeeEEEcCCCC---HHHHHHHhhc
Q 025707 119 LRRLDVEYIDLYYQHRVDTS----VPIEETIGEMKKLVEEGKIKYIGLSEAS---PDTIRRAHAV 176 (249)
Q Consensus 119 L~~Lg~d~iDl~~lh~~~~~----~~~~~~~~~l~~l~~~G~ir~iGvs~~~---~~~l~~~~~~ 176 (249)
++.|. + +.+.|-.... ....++++.+++.+++|.--...++.+. ...+.++++.
T Consensus 238 -~~~g~-r--~~i~H~ss~~~~~~~~~~~~l~~i~~a~~~G~~v~~e~~p~~~~~~~~~~~l~~~ 298 (415)
T cd01297 238 -RETGR-P--VHISHLKSAGAPNWGKIDRLLALIEAARAEGLQVTADVYPYGAGSEDDVRRIMAH 298 (415)
T ss_pred -HHhCC-C--EEEEEEecCCCcccchHHHHHHHHHHHHHhCCcEEEEeCCCCCCcHHHHHHHHcC
Confidence 34454 3 4555544322 3466778888888888854344444433 3445555544
No 149
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=53.16 E-value=1.6e+02 Score=25.98 Aligned_cols=50 Identities=16% Similarity=0.157 Sum_probs=33.5
Q ss_pred CCCHHHHHHHHHHHHHcCCCeEeCC---------CCcCC--CchHHHHHHHHHcCCCCCeE
Q 025707 38 PLSEEDGISIIKHAFSKGITFFDTA---------DKYGP--YTNEILLGKALKELPRENIQ 87 (249)
Q Consensus 38 ~~~~~~~~~~l~~A~~~Gi~~~Dta---------~~Yg~--g~se~~lg~~l~~~~r~~~~ 87 (249)
..+.++..++++..-++||..|+.+ ..||. -..++.+.+..+..++.++.
T Consensus 20 ~f~~~~~~~ia~~Ld~aGV~~IEvg~g~gl~g~s~~~G~~~~~~~e~i~~~~~~~~~~~~~ 80 (333)
T TIGR03217 20 QFTIEQVRAIAAALDEAGVDAIEVTHGDGLGGSSFNYGFSAHTDLEYIEAAADVVKRAKVA 80 (333)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCccccCCCCCCChHHHHHHHHHhCCCCEEE
Confidence 3578999999999999999999994 23332 23556666665544444443
No 150
>PRK14462 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=53.11 E-value=1.7e+02 Score=26.20 Aligned_cols=85 Identities=12% Similarity=0.108 Sum_probs=54.2
Q ss_pred EeecCCCC-----------CCHHHHHHHHHHHH-HcC---CeeEEEcC--CCCHHHHHHHhh---cCCceEEeeecCccc
Q 025707 131 YQHRVDTS-----------VPIEETIGEMKKLV-EEG---KIKYIGLS--EASPDTIRRAHA---VHPITAVQLEWSLWA 190 (249)
Q Consensus 131 ~lh~~~~~-----------~~~~~~~~~l~~l~-~~G---~ir~iGvs--~~~~~~l~~~~~---~~~~~~~q~~~n~~~ 190 (249)
-||.++++ .+++++++++.++. +.| .|+++=+. |-+.+.++++.+ ..+..++-++||.+.
T Consensus 225 SLha~d~e~r~~l~pv~~~~~l~~ll~~l~~y~~~~~~~i~ieyvLI~GvNDs~e~a~~La~llk~l~~~VnLIPyn~~~ 304 (356)
T PRK14462 225 SLHAVDDELRSELMPINKAYNIESIIDAVRKFPIDQRKRVMFEYLVIKDVNDDLKSAKKLVKLLNGIKAKVNLILFNPHE 304 (356)
T ss_pred ECCCCCHHHHHHhCCCCccCCHHHHHHHHHHHHHHhCCeEEEEEEEECCCCCCHHHHHHHHHHHhhcCcEEEEEeCCCCC
Confidence 48988764 24577888887554 334 35566554 445556555544 355678888999865
Q ss_pred cc----hh----hhHHHHHHHhCCcEEecccCc
Q 025707 191 RD----IE----NEIVPLCRELGIGIVPYCPLG 215 (249)
Q Consensus 191 ~~----~~----~~~~~~~~~~gi~v~a~spl~ 215 (249)
.. .. ..+.+..+++|+.+......+
T Consensus 305 ~~~~~~ps~e~i~~f~~~l~~~gi~vtvR~~~G 337 (356)
T PRK14462 305 GSKFERPSLEDMIKFQDYLNSKGLLCTIRESKG 337 (356)
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCcEEEeCCCC
Confidence 31 11 445666778899999887753
No 151
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=53.06 E-value=11 Score=31.76 Aligned_cols=98 Identities=15% Similarity=0.131 Sum_probs=54.5
Q ss_pred HHHHHHHHHHcCCCceeEEEeecCCCCCCHHHHHHH-HHHHHHcCCeeEEEcC-------CCCHHHHHHHhhcCCceEEe
Q 025707 112 RSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGE-MKKLVEEGKIKYIGLS-------EASPDTIRRAHAVHPITAVQ 183 (249)
Q Consensus 112 ~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~-l~~l~~~G~ir~iGvs-------~~~~~~l~~~~~~~~~~~~q 183 (249)
...+++.|+-.| +|||++=+-|-.....-+++++. ++-+++-|.--+.|=. ....++..+.+....|+++.
T Consensus 24 ~~~~~dlLe~ag-~yID~~K~g~Gt~~l~~~~~l~eki~l~~~~gV~v~~GGtl~E~a~~q~~~~~yl~~~k~lGf~~IE 102 (244)
T PF02679_consen 24 LRYLEDLLESAG-DYIDFLKFGWGTSALYPEEILKEKIDLAHSHGVYVYPGGTLFEVAYQQGKFDEYLEECKELGFDAIE 102 (244)
T ss_dssp HHHHHHHHHHHG-GG-SEEEE-TTGGGGSTCHHHHHHHHHHHCTT-EEEE-HHHHHHHHHTT-HHHHHHHHHHCT-SEEE
T ss_pred HHHHHHHHHHhh-hhccEEEecCceeeecCHHHHHHHHHHHHHcCCeEeCCcHHHHHHHhcChHHHHHHHHHHcCCCEEE
Confidence 356788888888 79999999887665444444444 4444455554444421 22334444444557788888
Q ss_pred eecCccccch--hhhHHHHHHHhCCcEEe
Q 025707 184 LEWSLWARDI--ENEIVPLCRELGIGIVP 210 (249)
Q Consensus 184 ~~~n~~~~~~--~~~~~~~~~~~gi~v~a 210 (249)
+.-..+.-.. ...+++.+++.|..|++
T Consensus 103 iSdGti~l~~~~r~~~I~~~~~~Gf~v~~ 131 (244)
T PF02679_consen 103 ISDGTIDLPEEERLRLIRKAKEEGFKVLS 131 (244)
T ss_dssp E--SSS---HHHHHHHHHHHCCTTSEEEE
T ss_pred ecCCceeCCHHHHHHHHHHHHHCCCEEee
Confidence 8655443322 26788888888887765
No 152
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=52.57 E-value=1.3e+02 Score=24.69 Aligned_cols=144 Identities=12% Similarity=-0.008 Sum_probs=81.7
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCCCCcCCCchHHHHHHHHHc----CCCCCeEEEecccccccCCcccccCCCHHHHHHH
Q 025707 39 LSEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKE----LPRENIQVATKFGFVELGFTSVIVKGTPEYVRSC 114 (249)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~g~se~~lg~~l~~----~~r~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~ 114 (249)
.+++++.++++.|++.|+.-.|+- ++.+...+.. ..+.++++.-=. .+.+.+++.
T Consensus 12 ~D~~~~~~~l~~al~~~~~~~~ii--------~~~l~p~m~~vG~~w~~gei~vaqe~-------------~as~~~~~~ 70 (213)
T cd02069 12 GIRDGIEEDTEEARQQYARPLEII--------NGPLMDGMKVVGDLFGAGKMFLPQVL-------------KSARVMKAA 70 (213)
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHH--------HHHHHHHHHHHHHHHccCCCcHHHHH-------------HHHHHHHHH
Confidence 378999999999999987654432 2333334433 345666654321 234455556
Q ss_pred HHHHHHHcCC------CceeEEEeecCCCC-CCHHHHHHHHHHHHHcCC-eeEEEcCCCCHHHHHHHhhcCCceEEeeec
Q 025707 115 CEASLRRLDV------EYIDLYYQHRVDTS-VPIEETIGEMKKLVEEGK-IKYIGLSEASPDTIRRAHAVHPITAVQLEW 186 (249)
Q Consensus 115 ~~~sL~~Lg~------d~iDl~~lh~~~~~-~~~~~~~~~l~~l~~~G~-ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~ 186 (249)
+.....++.. +.-- +++-.+..+ .++... =.-.-|+..|. |-++|. +.+++.+.+.....+++++.+.+
T Consensus 71 l~~l~~~l~~~~~~~~~~~~-vvl~t~~gd~HdiG~~-iv~~~l~~~G~~Vi~LG~-~vp~e~~v~~~~~~~~~~V~lS~ 147 (213)
T cd02069 71 VAYLEPYMEKEKGENSSKGK-IVLATVKGDVHDIGKN-LVGVILSNNGYEVIDLGV-MVPIEKILEAAKEHKADIIGLSG 147 (213)
T ss_pred HHHHHHHHhhccccCCCCCe-EEEEeCCCchhHHHHH-HHHHHHHhCCCEEEECCC-CCCHHHHHHHHHHcCCCEEEEcc
Confidence 6655333322 1222 334444333 333221 11234555664 666675 45567777777777888888876
Q ss_pred Cccccchh-hhHHHHHHHhCC
Q 025707 187 SLWARDIE-NEIVPLCRELGI 206 (249)
Q Consensus 187 n~~~~~~~-~~~~~~~~~~gi 206 (249)
........ .++++.+++.+.
T Consensus 148 ~~~~~~~~~~~~i~~L~~~~~ 168 (213)
T cd02069 148 LLVPSLDEMVEVAEEMNRRGI 168 (213)
T ss_pred chhccHHHHHHHHHHHHhcCC
Confidence 65443322 788888888865
No 153
>PF09989 DUF2229: CoA enzyme activase uncharacterised domain (DUF2229); InterPro: IPR018709 Proteins containing this domain include various bacterial hypothetical proteins, as well as CoA enzyme activases. The exact function of this domain has not, as yet, been defined.
Probab=52.49 E-value=45 Score=27.60 Aligned_cols=34 Identities=18% Similarity=0.240 Sum_probs=28.2
Q ss_pred ceEEeeecCccccchhhhHHHHHHHhCCcEEecc
Q 025707 179 ITAVQLEWSLWARDIENEIVPLCRELGIGIVPYC 212 (249)
Q Consensus 179 ~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~s 212 (249)
+.+.=-+||++++..+.++.+..++.|+.|+...
T Consensus 186 Ivl~GrpY~~~D~~in~~I~~~l~~~G~~vit~d 219 (221)
T PF09989_consen 186 IVLLGRPYNIYDPFINMGIPDKLRSLGVPVITED 219 (221)
T ss_pred EEEEcCCCcCCCcccCCchHHHHHHCCCeeeCcc
Confidence 4445558999999888999999999999998653
No 154
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=52.25 E-value=1.7e+02 Score=25.91 Aligned_cols=102 Identities=20% Similarity=0.191 Sum_probs=57.0
Q ss_pred CCCHHHHHHHHHHHHHHcCCCceeEEEeecC--------CCCCCHHHHHHHHHHHHHc-CCeeEEEcCC---CCHHHHHH
Q 025707 105 KGTPEYVRSCCEASLRRLDVEYIDLYYQHRV--------DTSVPIEETIGEMKKLVEE-GKIKYIGLSE---ASPDTIRR 172 (249)
Q Consensus 105 ~~s~~~i~~~~~~sL~~Lg~d~iDl~~lh~~--------~~~~~~~~~~~~l~~l~~~-G~ir~iGvs~---~~~~~l~~ 172 (249)
.++.+.+. .+-+.|.+.|+++|.+-..-.. ....+ -++.++.+++. ...+...+.. .+.+.++.
T Consensus 21 ~f~~~~~~-~i~~~L~~aGv~~IEvg~~~g~g~~s~~~g~~~~~---~~e~i~~~~~~~~~~~~~~ll~pg~~~~~dl~~ 96 (337)
T PRK08195 21 QYTLEQVR-AIARALDAAGVPVIEVTHGDGLGGSSFNYGFGAHT---DEEYIEAAAEVVKQAKIAALLLPGIGTVDDLKM 96 (337)
T ss_pred ccCHHHHH-HHHHHHHHcCCCEEEeecCCCCCCccccCCCCCCC---HHHHHHHHHHhCCCCEEEEEeccCcccHHHHHH
Confidence 45566554 4555699999999999632110 11122 23344444322 2344444332 25667777
Q ss_pred HhhcCCceEEeeecCccccchhhhHHHHHHHhCCcEEec
Q 025707 173 AHAVHPITAVQLEWSLWARDIENEIVPLCRELGIGIVPY 211 (249)
Q Consensus 173 ~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~ 211 (249)
+.+. +++.+.+.++.-+.+.....+++++++|..+...
T Consensus 97 a~~~-gvd~iri~~~~~e~~~~~~~i~~ak~~G~~v~~~ 134 (337)
T PRK08195 97 AYDA-GVRVVRVATHCTEADVSEQHIGLARELGMDTVGF 134 (337)
T ss_pred HHHc-CCCEEEEEEecchHHHHHHHHHHHHHCCCeEEEE
Confidence 6654 4555555444333333477899999999887764
No 155
>cd03320 OSBS o-Succinylbenzoate synthase (OSBS) catalyzes the conversion of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC) to 4-(2'-carboxyphenyl)-4-oxobutyrate (o-succinylbenzoate or OSB), a reaction in the menaquinone biosynthetic pathway. Menaquinone is an essential cofactor for anaerobic growth in eubacteria and some archaea. OSBS belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=52.15 E-value=1.4e+02 Score=25.05 Aligned_cols=86 Identities=19% Similarity=0.124 Sum_probs=57.0
Q ss_pred eeEEEeecCCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCCHHHHHHHhhcCCceEEeeecCcccc-chhhhHHHHHHHhC
Q 025707 127 IDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAVHPITAVQLEWSLWAR-DIENEIVPLCRELG 205 (249)
Q Consensus 127 iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~~~~~~~~~g 205 (249)
.++.++..|-. .+-++.+.++. .+.=-..|=|-++...+.++++...++++|+..+..-. ....++.+.|+++|
T Consensus 153 ~~i~~iEqP~~----~~d~~~~~~l~-~~~PIa~dEs~~~~~~~~~~~~~~~~d~v~~k~~~~GGit~~~~i~~~a~~~g 227 (263)
T cd03320 153 GRIEYIEQPLP----PDDLAELRRLA-AGVPIALDESLRRLDDPLALAAAGALGALVLKPALLGGPRALLELAEEARARG 227 (263)
T ss_pred cCCceEECCCC----hHHHHHHHHhh-cCCCeeeCCccccccCHHHHHhcCCCCEEEECchhcCCHHHHHHHHHHHHHcC
Confidence 35556665533 23355566665 33333556666777788888888788899987665432 12278999999999
Q ss_pred CcEEecccCccc
Q 025707 206 IGIVPYCPLGRG 217 (249)
Q Consensus 206 i~v~a~spl~~G 217 (249)
+.++..+-+..+
T Consensus 228 i~~~~~~~~es~ 239 (263)
T cd03320 228 IPAVVSSALESS 239 (263)
T ss_pred CCEEEEcchhhH
Confidence 999886655544
No 156
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=51.93 E-value=1.5e+02 Score=26.23 Aligned_cols=26 Identities=12% Similarity=0.117 Sum_probs=15.4
Q ss_pred CCHHHHHHHHHHHHHHcCCCceeEEEe
Q 025707 106 GTPEYVRSCCEASLRRLDVEYIDLYYQ 132 (249)
Q Consensus 106 ~s~~~i~~~~~~sL~~Lg~d~iDl~~l 132 (249)
.+.+.+.+.++..+ .|+.+++.++.+
T Consensus 164 qt~~~~~~~l~~~~-~l~~~~is~y~l 189 (360)
T TIGR00539 164 QTLNSLKEELKLAK-ELPINHLSAYAL 189 (360)
T ss_pred CCHHHHHHHHHHHH-ccCCCEEEeecc
Confidence 45566666665544 366666666655
No 157
>PRK14465 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=51.75 E-value=1.5e+02 Score=26.32 Aligned_cols=88 Identities=14% Similarity=0.151 Sum_probs=55.9
Q ss_pred EEEeecCCCC-----------CCHHHHHHHHHHHHHc-C---CeeEEEcCC--CCHHHHHHH---hhcCCceEEeeecCc
Q 025707 129 LYYQHRVDTS-----------VPIEETIGEMKKLVEE-G---KIKYIGLSE--ASPDTIRRA---HAVHPITAVQLEWSL 188 (249)
Q Consensus 129 l~~lh~~~~~-----------~~~~~~~~~l~~l~~~-G---~ir~iGvs~--~~~~~l~~~---~~~~~~~~~q~~~n~ 188 (249)
.+.||.|++. .+++++++++.++.++ | .++++=+.. -+.+.++++ +...+..++-++||.
T Consensus 215 aiSLhA~~~e~R~~l~Pi~~~~~le~ll~al~~~~~~~~r~v~ieyvLI~GvNDs~eda~~L~~ll~~l~~kVnLIPyN~ 294 (342)
T PRK14465 215 AISLNHPDPNGRLQIMDIEEKFPLEELLQAAKDFTRELKRRITFEYVMIPGVNMGRENANKLVKIARSLDCKINVIPLNT 294 (342)
T ss_pred EEEecCCChhhcceEeeccccCCHHHHHHHHHHHHHHcCCEEEEEEEEECCccCCHHHHHHHHHHHhhCCCcEEEEccCC
Confidence 4678988664 3468889998877644 2 233554433 444444444 444557788889997
Q ss_pred cccc-----h--hhhHHHHHHHhCCcEEecccCcc
Q 025707 189 WARD-----I--ENEIVPLCRELGIGIVPYCPLGR 216 (249)
Q Consensus 189 ~~~~-----~--~~~~~~~~~~~gi~v~a~spl~~ 216 (249)
.... . -....+..+++||.+......+.
T Consensus 295 ~~~~~~~ps~e~i~~F~~~L~~~Gi~v~~R~~~G~ 329 (342)
T PRK14465 295 EFFGWRRPTDDEVAEFIMLLEPAGVPILNRRSPGK 329 (342)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCc
Confidence 4311 1 15567777888999998877643
No 158
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=51.51 E-value=1.5e+02 Score=25.16 Aligned_cols=103 Identities=11% Similarity=0.094 Sum_probs=61.8
Q ss_pred CCHHHHHHHHHHHHHHcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCCHHHHHHHhhcCCceEEeee
Q 025707 106 GTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAVHPITAVQLE 185 (249)
Q Consensus 106 ~s~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~~ 185 (249)
.+.+.+.+...+.. .-|.|.||+-.- +......+.+...++.+++.-. .-|-+-+++++.++++++..+=...-+.
T Consensus 22 ~d~~~i~~~A~~~~-~~GAdiIDVg~~--~~~~eE~~r~~~~v~~l~~~~~-~plsIDT~~~~v~eaaL~~~~G~~iINs 97 (261)
T PRK07535 22 KDAAFIQKLALKQA-EAGADYLDVNAG--TAVEEEPETMEWLVETVQEVVD-VPLCIDSPNPAAIEAGLKVAKGPPLINS 97 (261)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCC--CCchhHHHHHHHHHHHHHHhCC-CCEEEeCCCHHHHHHHHHhCCCCCEEEe
Confidence 34555655555543 678999999853 2222334445555555554422 2478889999999999887211112223
Q ss_pred cCccccchhhhHHHHHHHhCCcEEeccc
Q 025707 186 WSLWARDIENEIVPLCRELGIGIVPYCP 213 (249)
Q Consensus 186 ~n~~~~~~~~~~~~~~~~~gi~v~a~sp 213 (249)
.|..... ...+++.+++.|+.++....
T Consensus 98 Is~~~~~-~~~~~~l~~~~g~~vv~m~~ 124 (261)
T PRK07535 98 VSAEGEK-LEVVLPLVKKYNAPVVALTM 124 (261)
T ss_pred CCCCCcc-CHHHHHHHHHhCCCEEEEec
Confidence 3332211 25788999999999987554
No 159
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=50.61 E-value=1.8e+02 Score=25.88 Aligned_cols=96 Identities=17% Similarity=0.169 Sum_probs=58.9
Q ss_pred CCHHHHHHHHHHHHHHcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcC-CeeEEEcCCCCHHHHHHHhhcCCceEEee
Q 025707 106 GTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEG-KIKYIGLSEASPDTIRRAHAVHPITAVQL 184 (249)
Q Consensus 106 ~s~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G-~ir~iGvs~~~~~~l~~~~~~~~~~~~q~ 184 (249)
++.+.. ..+-+.|.++|+++|++- .|.. .+.-++.++.+.+.+ ..+..+++..+.+.++.+.+. .++.+.+
T Consensus 20 ~s~~~k-~~ia~~L~~~Gv~~IEvG---~p~~---~~~~~e~i~~i~~~~~~~~i~~~~r~~~~di~~a~~~-g~~~i~i 91 (365)
T TIGR02660 20 FTAAEK-LAIARALDEAGVDELEVG---IPAM---GEEERAVIRAIVALGLPARLMAWCRARDADIEAAARC-GVDAVHI 91 (365)
T ss_pred CCHHHH-HHHHHHHHHcCCCEEEEe---CCCC---CHHHHHHHHHHHHcCCCcEEEEEcCCCHHHHHHHHcC-CcCEEEE
Confidence 445544 445566999999999986 2322 133356666666653 377778887888888887765 3333333
Q ss_pred ecCc--ccc------ch------hhhHHHHHHHhCCcEE
Q 025707 185 EWSL--WAR------DI------ENEIVPLCRELGIGIV 209 (249)
Q Consensus 185 ~~n~--~~~------~~------~~~~~~~~~~~gi~v~ 209 (249)
.... .+. .. ..+.+++++++|..|.
T Consensus 92 ~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~ 130 (365)
T TIGR02660 92 SIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVS 130 (365)
T ss_pred EEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEE
Confidence 2222 111 11 1468899999998765
No 160
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=50.11 E-value=50 Score=26.99 Aligned_cols=90 Identities=14% Similarity=0.168 Sum_probs=58.3
Q ss_pred HHHcCCCceeEEEee-cCCC-----CCCHHHHHHHHHHHHH--cCCeeEEEcCCCCHHHHHHHhhcCCceEEeeecCccc
Q 025707 119 LRRLDVEYIDLYYQH-RVDT-----SVPIEETIGEMKKLVE--EGKIKYIGLSEASPDTIRRAHAVHPITAVQLEWSLWA 190 (249)
Q Consensus 119 L~~Lg~d~iDl~~lh-~~~~-----~~~~~~~~~~l~~l~~--~G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~ 190 (249)
+..-|.++||+-.-- +|.. ...++.+...++.+++ .+. -+.+-+++++.++++++. +.+++-...+.-.
T Consensus 28 ~~~~GAdiIDIg~~st~p~~~~v~~~eE~~rl~~~l~~i~~~~~~~--plSIDT~~~~v~~~aL~~-g~~~ind~~~~~~ 104 (210)
T PF00809_consen 28 QVEAGADIIDIGAESTRPGATPVSEEEEMERLVPVLQAIREENPDV--PLSIDTFNPEVAEAALKA-GADIINDISGFED 104 (210)
T ss_dssp HHHTT-SEEEEESSTSSTTSSSSHHHHHHHHHHHHHHHHHHHHTTS--EEEEEESSHHHHHHHHHH-TSSEEEETTTTSS
T ss_pred HHHhcCCEEEecccccCCCCCcCCHHHHHHHHHHHHHHHhccCCCe--EEEEECCCHHHHHHHHHc-CcceEEecccccc
Confidence 345689999987543 2221 1223445666666665 344 677889999999999988 5554433333221
Q ss_pred cchhhhHHHHHHHhCCcEEecccC
Q 025707 191 RDIENEIVPLCRELGIGIVPYCPL 214 (249)
Q Consensus 191 ~~~~~~~~~~~~~~gi~v~a~spl 214 (249)
..++++.++++|..++++..-
T Consensus 105 ---~~~~~~l~a~~~~~vV~m~~~ 125 (210)
T PF00809_consen 105 ---DPEMLPLAAEYGAPVVLMHSD 125 (210)
T ss_dssp ---STTHHHHHHHHTSEEEEESES
T ss_pred ---cchhhhhhhcCCCEEEEEecc
Confidence 378999999999999987655
No 161
>COG2875 CobM Precorrin-4 methylase [Coenzyme metabolism]
Probab=50.02 E-value=61 Score=27.24 Aligned_cols=129 Identities=16% Similarity=0.068 Sum_probs=74.7
Q ss_pred CCHHHHHHHHHHHHHHcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCCeeEE--EcCCCCHHHHHHHhhcCCceEEe
Q 025707 106 GTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYI--GLSEASPDTIRRAHAVHPITAVQ 183 (249)
Q Consensus 106 ~s~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~i--Gvs~~~~~~l~~~~~~~~~~~~q 183 (249)
.+.+.|.+.+.+.-+ +--|+.=||.-|++. ...+++.+++|.+.|.=-.+ |||.+.......-.+..-+.+.|
T Consensus 59 ~tLeeIi~~m~~a~~----~Gk~VvRLhSGDpsi-YgA~~EQm~~L~~~gI~yevvPGVss~~AAAA~L~~ELT~P~vsQ 133 (254)
T COG2875 59 LTLEEIIDLMVDAVR----EGKDVVRLHSGDPSI-YGALAEQMRELEALGIPYEVVPGVSSFAAAAAALGIELTVPGVSQ 133 (254)
T ss_pred CCHHHHHHHHHHHHH----cCCeEEEeecCChhH-HHHHHHHHHHHHHcCCCeEEeCCchHHHHHHHHhCceeecCCcce
Confidence 445555544443333 455889999876643 56789999999999875444 77766554332222333343444
Q ss_pred e----ecCccccchhhhHHHHHHHhCCcEEecccCc------ccccCCCCCCCCCCCCcccccCCC
Q 025707 184 L----EWSLWARDIENEIVPLCRELGIGIVPYCPLG------RGFFGGKAVVESVPLDSFLVCFSS 239 (249)
Q Consensus 184 ~----~~n~~~~~~~~~~~~~~~~~gi~v~a~spl~------~G~l~g~~~~~~~~~~~~~~~~~~ 239 (249)
. ..+--.+-++.+-++...++|....-|-... .-++.|.+.++....--++++||+
T Consensus 134 tvilTR~sgrt~vpe~e~l~~la~~~aTm~I~L~v~~I~~vv~~L~~g~y~~dtPVaVV~rAsWpD 199 (254)
T COG2875 134 TVILTRPSGRTPVPEKESLAALAKHGATMVIFLGVHAIDKVVEELLEGGYPPDTPVAVVYRASWPD 199 (254)
T ss_pred eEEEEccccCCCCCchhHHHHHHhcCceeEeeehhhHHHHHHHHHhcCCCCCCCCEEEEEecCCCc
Confidence 3 2222222234667777777777655543321 124555566555566678888884
No 162
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=49.94 E-value=2.2e+02 Score=26.58 Aligned_cols=102 Identities=11% Similarity=0.101 Sum_probs=56.0
Q ss_pred CCCHHHHHHHHHHHHHHcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcC-CeeEEEcCC----C--CHHHHHHHhhcC
Q 025707 105 KGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEG-KIKYIGLSE----A--SPDTIRRAHAVH 177 (249)
Q Consensus 105 ~~s~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G-~ir~iGvs~----~--~~~~l~~~~~~~ 177 (249)
..+++.+.+.++...++.|+.++ .+...+...+.+.+.+.+++++++| .--.++++. . +.+.+..+ ...
T Consensus 221 ~rs~e~Vv~Ei~~l~~~~gv~~~---~~~Dd~f~~~~~~~~~l~~~l~~~~~l~i~w~~~~r~~~i~~d~ell~~l-~~a 296 (497)
T TIGR02026 221 HRDPKKFVDEIEWLVRTHGVGFF---ILADEEPTINRKKFQEFCEEIIARNPISVTWGINTRVTDIVRDADILHLY-RRA 296 (497)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEE---EEEecccccCHHHHHHHHHHHHhcCCCCeEEEEecccccccCCHHHHHHH-HHh
Confidence 34789999999999898887654 3333222334556677778888876 323344432 1 33333333 333
Q ss_pred CceEEeeecC--------ccccc----hhhhHHHHHHHhCCcEEe
Q 025707 178 PITAVQLEWS--------LWARD----IENEIVPLCRELGIGIVP 210 (249)
Q Consensus 178 ~~~~~q~~~n--------~~~~~----~~~~~~~~~~~~gi~v~a 210 (249)
++..+.+-.- .+.+. ...+.++.|+++||.+.+
T Consensus 297 G~~~v~iGiES~~~~~L~~~~K~~t~~~~~~ai~~l~~~Gi~~~~ 341 (497)
T TIGR02026 297 GLVHISLGTEAAAQATLDHFRKGTTTSTNKEAIRLLRQHNILSEA 341 (497)
T ss_pred CCcEEEEccccCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCcEEE
Confidence 3333333111 11111 125677888888887654
No 163
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=49.68 E-value=82 Score=26.08 Aligned_cols=75 Identities=19% Similarity=0.120 Sum_probs=46.5
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCCCCcCC-CchHHHHHHHHHcCCCCCeEEEecccccccCCcccccCCCHHHHHHHHHH
Q 025707 39 LSEEDGISIIKHAFSKGITFFDTADKYGP-YTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEA 117 (249)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~-g~se~~lg~~l~~~~r~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~~~~ 117 (249)
.++++..++.+.+.++|..|+=|+-.|+. |.+.+.+....+.. +.++-| |..... .+.+...+-++.
T Consensus 133 L~~e~i~~a~~~~~~agadfIKTsTG~~~~gat~~~v~~m~~~~-~~~~~I--KasGGI---------rt~~~a~~~i~a 200 (221)
T PRK00507 133 LTDEEKVKACEIAKEAGADFVKTSTGFSTGGATVEDVKLMRETV-GPRVGV--KASGGI---------RTLEDALAMIEA 200 (221)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHh-CCCceE--EeeCCc---------CCHHHHHHHHHc
Confidence 46788999999999999999999999863 45555554444422 222222 221111 245666666666
Q ss_pred HHHHcCCC
Q 025707 118 SLRRLDVE 125 (249)
Q Consensus 118 sL~~Lg~d 125 (249)
--.|+|+.
T Consensus 201 GA~riGtS 208 (221)
T PRK00507 201 GATRLGTS 208 (221)
T ss_pred CcceEccC
Confidence 55666654
No 164
>PRK05406 LamB/YcsF family protein; Provisional
Probab=49.59 E-value=74 Score=26.89 Aligned_cols=81 Identities=14% Similarity=0.281 Sum_probs=55.4
Q ss_pred eeecccccCCCCCCCCHHHHHHHHHHHH-HcCCCeEeCCCCcCCCchHHHHHHHHHcCCCCCeEEEecccccccC-Cccc
Q 025707 25 GYGCMSLSGCYNSPLSEEDGISIIKHAF-SKGITFFDTADKYGPYTNEILLGKALKELPRENIQVATKFGFVELG-FTSV 102 (249)
Q Consensus 25 g~Gt~~~~~~~~~~~~~~~~~~~l~~A~-~~Gi~~~Dta~~Yg~g~se~~lg~~l~~~~r~~~~I~tK~~~~~~~-~~~~ 102 (249)
+||.|.+|. +++...+|..|- ..| -+.| ...++-+.++-.....+-|...-++++.. .++.
T Consensus 13 ~fG~w~~g~-------D~~lmp~IssANIACG-------~HAG---Dp~~M~~tv~lA~~~gV~IGAHPgypD~~gFGRR 75 (246)
T PRK05406 13 SFGAWKMGD-------DEALLPLVTSANIACG-------FHAG---DPAVMRRTVRLAKENGVAIGAHPGYPDLEGFGRR 75 (246)
T ss_pred CCCCCCCCC-------HHHHHHHhhhHHHhcc-------ccCC---CHHHHHHHHHHHHHcCCeEccCCCCCccCCCCCC
Confidence 788887764 677778887775 334 3666 55667777765567778887777766533 3455
Q ss_pred ccCCCHHHHHHHHHHHHHHc
Q 025707 103 IVKGTPEYVRSCCEASLRRL 122 (249)
Q Consensus 103 ~~~~s~~~i~~~~~~sL~~L 122 (249)
..+.+++.++..+...+..|
T Consensus 76 ~m~~s~~el~~~v~yQigAL 95 (246)
T PRK05406 76 NMDLSPEELYALVLYQIGAL 95 (246)
T ss_pred CCCCCHHHHHHHHHHHHHHH
Confidence 56788999888876666655
No 165
>COG2069 CdhD CO dehydrogenase/acetyl-CoA synthase delta subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=49.42 E-value=1.8e+02 Score=25.45 Aligned_cols=95 Identities=15% Similarity=0.255 Sum_probs=65.3
Q ss_pred HHHHHHcCCCceeEEEeecCCCC-----CCHHHHHHHHHHHHHcCCeeEE-EcCC---CCHHHHHHHhhc-CCceEEeee
Q 025707 116 EASLRRLDVEYIDLYYQHRVDTS-----VPIEETIGEMKKLVEEGKIKYI-GLSE---ASPDTIRRAHAV-HPITAVQLE 185 (249)
Q Consensus 116 ~~sL~~Lg~d~iDl~~lh~~~~~-----~~~~~~~~~l~~l~~~G~ir~i-Gvs~---~~~~~l~~~~~~-~~~~~~q~~ 185 (249)
+..-+++|. |++-+|-.+.+ .+.+++.+.|+++.+.=+|--| |=|. -+++.++++.+. .+-.|.--.
T Consensus 157 rk~Vk~fga---dmvTiHlIsTdPki~D~p~~EAak~lEdvLqAVdvPiiiGGSGnpeKDpeVlekaAEvaEGeRclLaS 233 (403)
T COG2069 157 RKCVKKFGA---DMVTIHLISTDPKIKDTPAKEAAKTLEDVLQAVDVPIIIGGSGNPEKDPEVLEKAAEVAEGERCLLAS 233 (403)
T ss_pred HHHHHHhCC---ceEEEEeecCCccccCCCHHHHHHHHHHHHHhcCcCEEecCCCCCccCHHHHHHHHHhhcCceEEeec
Confidence 344567776 77778866443 4568899999999888776544 5554 466888888876 233344334
Q ss_pred cCccccchhhhHHHHHHHhCCcEEecccCc
Q 025707 186 WSLWARDIENEIVPLCRELGIGIVPYCPLG 215 (249)
Q Consensus 186 ~n~~~~~~~~~~~~~~~~~gi~v~a~spl~ 215 (249)
-|+-. + -..+.+.+.++|=.|++|++..
T Consensus 234 anldl-D-y~~ia~AA~ky~H~VLswt~~D 261 (403)
T COG2069 234 ANLDL-D-YERIAEAALKYDHVVLSWTQMD 261 (403)
T ss_pred ccccc-C-HHHHHHHHHhcCceEEEeeccC
Confidence 44421 1 2779999999999999999975
No 166
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=49.01 E-value=78 Score=27.59 Aligned_cols=133 Identities=17% Similarity=0.118 Sum_probs=75.1
Q ss_pred CHHHHHHHHHHHHHcCCCeEeC----------CCCcCCC--chHHHHHHHHHcCC-CCCeEEEecccccccCCcccccCC
Q 025707 40 SEEDGISIIKHAFSKGITFFDT----------ADKYGPY--TNEILLGKALKELP-RENIQVATKFGFVELGFTSVIVKG 106 (249)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~Dt----------a~~Yg~g--~se~~lg~~l~~~~-r~~~~I~tK~~~~~~~~~~~~~~~ 106 (249)
+.+...+..+.+.+.|+..||- ...+|.+ ..-..+.+.++... .-++-|+-|+.... +.
T Consensus 64 ~~~~~~~aa~~~~~~~~~~IDlN~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~~~~pvsvKiR~g~--------~~ 135 (309)
T PF01207_consen 64 DPEDLAEAAEIVAELGFDGIDLNMGCPAPKVTKGGAGAALLKDPDLLAEIVKAVRKAVPIPVSVKIRLGW--------DD 135 (309)
T ss_dssp -HHHHHHHHHHHCCTT-SEEEEEE---SHHHHHCT-GGGGGC-HHHHHHHHHHHHHH-SSEEEEEEESEC--------T-
T ss_pred cHHHHHHHHHhhhccCCcEEeccCCCCHHHHhcCCcChhhhcChHHhhHHHHhhhcccccceEEeccccc--------cc
Confidence 6788888888888899999993 3455532 24455566665411 12255666665433 11
Q ss_pred CHHHHHHHHHHHHHHcCCCceeEEEeecCCCCCCH--HHHHHHHHHHHHcCCeeEEEcCC-CCHHHHHHHhhcCCceEEe
Q 025707 107 TPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPI--EETIGEMKKLVEEGKIKYIGLSE-ASPDTIRRAHAVHPITAVQ 183 (249)
Q Consensus 107 s~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~--~~~~~~l~~l~~~G~ir~iGvs~-~~~~~l~~~~~~~~~~~~q 183 (249)
+.+...+ +-+.|+..| +|.+.+|........ ..-|+.+.++++.=.|--||=.+ ++.+.+.+.++....+-++
T Consensus 136 ~~~~~~~-~~~~l~~~G---~~~i~vH~Rt~~q~~~~~a~w~~i~~i~~~~~ipvi~NGdI~s~~d~~~~~~~tg~dgvM 211 (309)
T PF01207_consen 136 SPEETIE-FARILEDAG---VSAITVHGRTRKQRYKGPADWEAIAEIKEALPIPVIANGDIFSPEDAERMLEQTGADGVM 211 (309)
T ss_dssp -CHHHHH-HHHHHHHTT-----EEEEECS-TTCCCTS---HHHHHHCHHC-TSEEEEESS--SHHHHHHHCCCH-SSEEE
T ss_pred chhHHHH-HHHHhhhcc---cceEEEecCchhhcCCcccchHHHHHHhhcccceeEEcCccCCHHHHHHHHHhcCCcEEE
Confidence 2333333 455677777 588999987554433 45688888888887776665544 5667777777665566555
Q ss_pred e
Q 025707 184 L 184 (249)
Q Consensus 184 ~ 184 (249)
+
T Consensus 212 i 212 (309)
T PF01207_consen 212 I 212 (309)
T ss_dssp E
T ss_pred E
Confidence 5
No 167
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=48.38 E-value=1.8e+02 Score=25.15 Aligned_cols=149 Identities=12% Similarity=0.107 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHHcCCCeEeCCCCcCCCchHHHHHHHHHcCCCCCeEEEecccccccCCcccccCCCHHHHHHHHHHHHH
Q 025707 41 EEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLR 120 (249)
Q Consensus 41 ~~~~~~~l~~A~~~Gi~~~Dta~~Yg~g~se~~lg~~l~~~~r~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~ 120 (249)
..-..++-....+.|+|..|.+.. .+ ...+.+|....+-... ....+.+.+++.++...+
T Consensus 20 ~GIVA~Vs~~Lae~g~NI~disq~-~d-------------~~~~~ffm~i~~~~~~------~~~~~~~~l~~~l~~l~~ 79 (289)
T PRK13010 20 PGIVAAVSGFLAEKGCYIVELTQF-DD-------------DESGRFFMRVSFHAQS------AEAASVDTFRQEFQPVAE 79 (289)
T ss_pred CCcHHHHHHHHHHCCCCEEecccc-cc-------------cccCcEEEEEEEEcCC------CCCCCHHHHHHHHHHHHH
Confidence 344556666667999999998864 21 1344555544332111 113568899999999999
Q ss_pred HcCCCceeEEEeecCCCCCC-------HHHHHHHHHHHHHcCC--eeEEEc-CCCCHHHHHHHhhcCCceEEeeecCccc
Q 025707 121 RLDVEYIDLYYQHRVDTSVP-------IEETIGEMKKLVEEGK--IKYIGL-SEASPDTIRRAHAVHPITAVQLEWSLWA 190 (249)
Q Consensus 121 ~Lg~d~iDl~~lh~~~~~~~-------~~~~~~~l~~l~~~G~--ir~iGv-s~~~~~~l~~~~~~~~~~~~q~~~n~~~ 190 (249)
+||++ +.++..+.... ...-+++|-...++|. +.-.+| ||.. ... +......+-+..++....+
T Consensus 80 ~l~l~----~~i~~~~~~~kiavl~Sg~g~nl~al~~~~~~~~l~~~i~~visn~~-~~~-~~A~~~gIp~~~~~~~~~~ 153 (289)
T PRK13010 80 KFDMQ----WAIHPDGQRPKVVIMVSKFDHCLNDLLYRWRMGELDMDIVGIISNHP-DLQ-PLAVQHDIPFHHLPVTPDT 153 (289)
T ss_pred HhCCe----EEEecCCCCeEEEEEEeCCCccHHHHHHHHHCCCCCcEEEEEEECCh-hHH-HHHHHcCCCEEEeCCCccc
Confidence 99975 34444333211 1234666666666665 344444 4543 333 3333344545555544433
Q ss_pred cc-hhhhHHHHHHHhCCcEEecccCc
Q 025707 191 RD-IENEIVPLCRELGIGIVPYCPLG 215 (249)
Q Consensus 191 ~~-~~~~~~~~~~~~gi~v~a~spl~ 215 (249)
+. .+..+++.+++.++.++.-.-++
T Consensus 154 ~~~~~~~~~~~l~~~~~Dlivlagym 179 (289)
T PRK13010 154 KAQQEAQILDLIETSGAELVVLARYM 179 (289)
T ss_pred ccchHHHHHHHHHHhCCCEEEEehhh
Confidence 32 23578999999988887655544
No 168
>COG4464 CapC Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=48.24 E-value=95 Score=25.85 Aligned_cols=123 Identities=12% Similarity=0.093 Sum_probs=63.9
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCCCCcCCC---chHHHHHHHHHc--------------CCCCCeEEEecccccccC---
Q 025707 39 LSEEDGISIIKHAFSKGITFFDTADKYGPY---TNEILLGKALKE--------------LPRENIQVATKFGFVELG--- 98 (249)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~g---~se~~lg~~l~~--------------~~r~~~~I~tK~~~~~~~--- 98 (249)
.+.++..++++.|.+.||+-+=..++|-.| ..++.+.+.+.+ .+..|++|..-+--.-..
T Consensus 17 ~s~eesl~ml~~A~~qGvt~iVaTsHh~~g~y~n~~~~v~~~~~~ln~~~~~~aidl~v~pGQEIrIt~~vl~~l~~g~I 96 (254)
T COG4464 17 KSLEESLAMLREAVRQGVTKIVATSHHLHGRYENPIEKVKEKANQLNEILKKEAIDLKVLPGQEIRITGDVLDDLDKGII 96 (254)
T ss_pred CcHHHHHHHHHHHHHcCceEEeecccccCCccCChHHHHHHHHHHHHHHHHhhcCCceeccCceEEEchHHHHHHhcCcc
Confidence 478999999999999999988666666544 355555555543 355666665443210000
Q ss_pred ----Cc-ccccCCCHHHHHHHHHHHHHHcCCC-ceeEEEeecCCCCCCHHHHHHHHHHHHHcCCeeEEEcC
Q 025707 99 ----FT-SVIVKGTPEYVRSCCEASLRRLDVE-YIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLS 163 (249)
Q Consensus 99 ----~~-~~~~~~s~~~i~~~~~~sL~~Lg~d-~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs 163 (249)
+. .....++-.++-+-.++.+=.|... ++= .+..|.....+..-...|.+|+++|--..|--|
T Consensus 97 ~tindskYlLIEF~~~~v~~ya~~lf~elq~kGi~P--IIAHPERn~~i~kn~~~lyeLid~ga~sQvts~ 165 (254)
T COG4464 97 LTINDSKYLLIEFPMNHVPRYADQLFFELQSKGIIP--IIAHPERNRAIQKNPYLLYELIDKGAYSQVTSS 165 (254)
T ss_pred ccccccceEEEEccCCcchhhHHHHHHHHHHCCcee--eeechhhHHHHHhChHHHHHHHhcccceeechH
Confidence 00 0011112222222233333333211 111 122344444455667777888888876555433
No 169
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=48.22 E-value=1.4e+02 Score=25.13 Aligned_cols=96 Identities=13% Similarity=0.132 Sum_probs=59.2
Q ss_pred HHHHHHHHHcCCCceeEEEeecCCCCCCHHHHHHH-HHHHHHcCCeeEEEcCCC--------CHHHHHHHhhcCCceEEe
Q 025707 113 SCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGE-MKKLVEEGKIKYIGLSEA--------SPDTIRRAHAVHPITAVQ 183 (249)
Q Consensus 113 ~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~-l~~l~~~G~ir~iGvs~~--------~~~~l~~~~~~~~~~~~q 183 (249)
+.++..|+-+| +|||++=+-|-.....-+++++. .+-+++.|.--+.| .++ ..++..+......|+++.
T Consensus 12 ~~~~d~Le~~g-~yID~lKfg~Gt~~l~~~~~l~eki~la~~~~V~v~~G-Gtl~E~~~~q~~~~~Yl~~~k~lGf~~IE 89 (237)
T TIGR03849 12 KFVEDYLKVCG-DYITFVKFGWGTSALIDRDIVKEKIEMYKDYGIKVYPG-GTLFEIAHSKGKFDEYLNECDELGFEAVE 89 (237)
T ss_pred HHHHHHHHHhh-hheeeEEecCceEeeccHHHHHHHHHHHHHcCCeEeCC-ccHHHHHHHhhhHHHHHHHHHHcCCCEEE
Confidence 56788888999 79999999887665544444444 44455666655556 211 112222223335688888
Q ss_pred eecCccccch--hhhHHHHHHHhCCcEEe
Q 025707 184 LEWSLWARDI--ENEIVPLCRELGIGIVP 210 (249)
Q Consensus 184 ~~~n~~~~~~--~~~~~~~~~~~gi~v~a 210 (249)
+.-..+.-.. ...+++.++++|..++.
T Consensus 90 iS~G~~~i~~~~~~rlI~~~~~~g~~v~~ 118 (237)
T TIGR03849 90 ISDGSMEISLEERCNLIERAKDNGFMVLS 118 (237)
T ss_pred EcCCccCCCHHHHHHHHHHHHhCCCeEec
Confidence 7655443222 26788888888887764
No 170
>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.
Probab=47.93 E-value=2.1e+02 Score=25.67 Aligned_cols=87 Identities=15% Similarity=0.141 Sum_probs=55.0
Q ss_pred eEEEeecCCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCCHHHHHHHhhc-CCceEEeeecCccccchh-hhHHHHHHHhC
Q 025707 128 DLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAV-HPITAVQLEWSLWARDIE-NEIVPLCRELG 205 (249)
Q Consensus 128 Dl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~-~~~~~~q~~~n~~~~~~~-~~~~~~~~~~g 205 (249)
|-+++..+.. ...+..+..+...+.++..-+...+.+.+++++.. .++.++..+.|+.-.... ..+.+.|+++|
T Consensus 91 D~Vl~~~p~y----~~~~~~~~~~~~~~~~~v~~~d~~d~~~l~~ai~~~tklV~l~~p~NPtG~~~dl~~I~~la~~~g 166 (382)
T TIGR02080 91 DLLVAPHDCY----GGTYRLLNALAKKGCFRVLFVDQGDEQALRAALAQKPKLVLIETPSNPLLRVVDIAKICHLAKAVG 166 (382)
T ss_pred CEEEEcCCCc----HHHHHHHHHHHhhcCeEEEEECCCCHHHHHHhcCcCceEEEEECCCCCCCEecCHHHHHHHHHHcC
Confidence 5555544422 33445555555555555555555678888887753 455566667776544322 78999999999
Q ss_pred CcEEecccCcccc
Q 025707 206 IGIVPYCPLGRGF 218 (249)
Q Consensus 206 i~v~a~spl~~G~ 218 (249)
+.++.=..++.+.
T Consensus 167 ~~vvvD~a~~~~~ 179 (382)
T TIGR02080 167 AVVVVDNTFLSPA 179 (382)
T ss_pred CEEEEECCCcccc
Confidence 9999777766554
No 171
>COG0820 Predicted Fe-S-cluster redox enzyme [General function prediction only]
Probab=47.93 E-value=1.2e+02 Score=27.09 Aligned_cols=86 Identities=12% Similarity=0.171 Sum_probs=55.9
Q ss_pred EEEeecCCCC-----------CCHHHHHHHHHHHHHcCCeeEEEcC-------CCCHHHHHHHhh---cCCceEEeeecC
Q 025707 129 LYYQHRVDTS-----------VPIEETIGEMKKLVEEGKIKYIGLS-------EASPDTIRRAHA---VHPITAVQLEWS 187 (249)
Q Consensus 129 l~~lh~~~~~-----------~~~~~~~~~l~~l~~~G~ir~iGvs-------~~~~~~l~~~~~---~~~~~~~q~~~n 187 (249)
.+.+|.|++. .++++.+++.+...+... +.|-+- |-+.++..++.+ ..+..++-++||
T Consensus 215 AiSLHa~nd~lR~~L~Pink~~~~e~l~~a~r~Y~~~t~-~rVt~EY~Ll~~VND~~e~A~~L~~ll~~~~~~VNLIP~N 293 (349)
T COG0820 215 AISLHAPNDELRDQLMPINKKYPIEELLEAIRYYPEKSG-RRVTFEYVLLDGVNDSLEHAKELAKLLKGIPCKVNLIPYN 293 (349)
T ss_pred EEecCCCCHHHHhhhhccccCCCHHHHHHHHHhhhhccC-ceEEEEeeecccccCCHHHHHHHHHHhcCCCceEEEeecC
Confidence 4678999764 346788888888876544 444331 344555444444 356688999999
Q ss_pred ccccch-----h---hhHHHHHHHhCCcEEecccCc
Q 025707 188 LWARDI-----E---NEIVPLCRELGIGIVPYCPLG 215 (249)
Q Consensus 188 ~~~~~~-----~---~~~~~~~~~~gi~v~a~spl~ 215 (249)
++.... . ....+..++.||.+....+-+
T Consensus 294 p~~~~~y~r~~~~~i~~F~~~L~~~gv~~tvR~~~g 329 (349)
T COG0820 294 PVPGSDYERSSKERIRKFLKILKKAGVLVTVRKTRG 329 (349)
T ss_pred CCCCCCccCCcHHHHHHHHHHHHhCCeeEEeccccc
Confidence 986432 1 456666667789888877643
No 172
>PLN02540 methylenetetrahydrofolate reductase
Probab=47.80 E-value=2.6e+02 Score=26.79 Aligned_cols=153 Identities=14% Similarity=0.145 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHHcCCCeEeCCCCcCCCchHHHHHHHHHcCCCC-CeEEEecccccccCCcccccCCCHHHHHHHHHHHH
Q 025707 41 EEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELPRE-NIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASL 119 (249)
Q Consensus 41 ~~~~~~~l~~A~~~Gi~~~Dta~~Yg~g~se~~lg~~l~~~~r~-~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL 119 (249)
.+...+.++.-...|-.|+|.+..=|....+..+.-+-. ..+. .+-..-.+. ..+.+...+...+++.
T Consensus 14 ~~nL~~~~~rl~~~~P~FisVT~gAgGst~~~Tl~la~~-lq~~~Gie~i~HLT---------Crd~n~~~L~~~L~~a- 82 (565)
T PLN02540 14 VDNLFERMDRMVAHGPLFCDITWGAGGSTADLTLDIANR-MQNMICVETMMHLT---------CTNMPVEKIDHALETI- 82 (565)
T ss_pred HHHHHHHHHHHhccCCCEEEeCCCCCCCcHHHHHHHHHH-HHHhcCCCeeEEee---------ecCCCHHHHHHHHHHH-
Confidence 455556666666889999998876665566666655543 2221 111112211 1235677777777766
Q ss_pred HHcCCCceeEEEeecCCC-C--------CCHHHHHHHHHHHHHc-CCeeEEEcCCCCH------------------HHHH
Q 025707 120 RRLDVEYIDLYYQHRVDT-S--------VPIEETIGEMKKLVEE-GKIKYIGLSEASP------------------DTIR 171 (249)
Q Consensus 120 ~~Lg~d~iDl~~lh~~~~-~--------~~~~~~~~~l~~l~~~-G~ir~iGvs~~~~------------------~~l~ 171 (249)
..+|++. ++.|..... . .....+.+-++.+++. |..-.|||+.+.. ..+.
T Consensus 83 ~~~GIrN--ILALrGDpp~~~d~~~~~~g~F~~A~dLV~~Ir~~~gd~f~IgVAGYPEgHpe~~~~~~~~~~~~~~~dl~ 160 (565)
T PLN02540 83 KSNGIQN--ILALRGDPPHGQDKFVQVEGGFACALDLVKHIRSKYGDYFGITVAGYPEAHPDVIGGDGLATPEAYQKDLA 160 (565)
T ss_pred HHCCCCE--EEEECCCCCCCCCCcCCCCCCcccHHHHHHHHHHhCCCCceEEEeCCCCCCCcccccccccCCCChHHHHH
Confidence 7888764 455543211 1 1122345555555554 4456788875422 1333
Q ss_pred HHhhc----CCceEEeeecCccccchhhhHHHHHHHhC--CcEE
Q 025707 172 RAHAV----HPITAVQLEWSLWARDIENEIVPLCRELG--IGIV 209 (249)
Q Consensus 172 ~~~~~----~~~~~~q~~~n~~~~~~~~~~~~~~~~~g--i~v~ 209 (249)
.+.+. ..+-+-|.-|+. +...+.++.|++.| ++|+
T Consensus 161 ~Lk~KvdAGAdFiITQlfFD~---d~f~~f~~~~r~~Gi~vPIi 201 (565)
T PLN02540 161 YLKEKVDAGADLIITQLFYDT---DIFLKFVNDCRQIGITCPIV 201 (565)
T ss_pred HHHHHHHcCCCEEeeccccCH---HHHHHHHHHHHhcCCCCCEE
Confidence 33332 234444554433 22367889999998 5554
No 173
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=47.79 E-value=1.1e+02 Score=25.90 Aligned_cols=62 Identities=19% Similarity=0.230 Sum_probs=48.5
Q ss_pred HHHHHHHHHHcCC--------------------------CceeEEEeecCCCCCCH---HHHHHHHHHHHHcCCeeEEEc
Q 025707 112 RSCCEASLRRLDV--------------------------EYIDLYYQHRVDTSVPI---EETIGEMKKLVEEGKIKYIGL 162 (249)
Q Consensus 112 ~~~~~~sL~~Lg~--------------------------d~iDl~~lh~~~~~~~~---~~~~~~l~~l~~~G~ir~iGv 162 (249)
++.++++|+++|+ ...|++++.-|-...+. .++++.|.+|+++|+ .|=+
T Consensus 117 ~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~--tIl~ 194 (254)
T COG1121 117 KEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGK--TVLM 194 (254)
T ss_pred HHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCC--EEEE
Confidence 6788888888873 45688888887666554 468999999999987 7888
Q ss_pred CCCCHHHHHHHhh
Q 025707 163 SEASPDTIRRAHA 175 (249)
Q Consensus 163 s~~~~~~l~~~~~ 175 (249)
.+|+...+.+..+
T Consensus 195 vtHDL~~v~~~~D 207 (254)
T COG1121 195 VTHDLGLVMAYFD 207 (254)
T ss_pred EeCCcHHhHhhCC
Confidence 8999888766544
No 174
>PRK06740 histidinol-phosphatase; Validated
Probab=47.33 E-value=2e+02 Score=25.35 Aligned_cols=25 Identities=20% Similarity=0.134 Sum_probs=20.3
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCCCC
Q 025707 40 SEEDGISIIKHAFSKGITFFDTADK 64 (249)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~Dta~~ 64 (249)
........+++|++.|+..|=.+.+
T Consensus 59 ~~~~~e~yv~~Ai~~G~~~ig~SdH 83 (331)
T PRK06740 59 TTKWIDLYLEEALRKGIKEVGIVDH 83 (331)
T ss_pred ccchHHHHHHHHHHCCCcEEEECCC
Confidence 4566889999999999999966554
No 175
>COG0218 Predicted GTPase [General function prediction only]
Probab=47.24 E-value=1.6e+02 Score=24.11 Aligned_cols=101 Identities=15% Similarity=-0.013 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHH------cCCCeEeCCCCcCCCchHHHHHHHHHcCCCCCeEEEecccccccCCcccccCCCHHHHHHH
Q 025707 41 EEDGISIIKHAFS------KGITFFDTADKYGPYTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSC 114 (249)
Q Consensus 41 ~~~~~~~l~~A~~------~Gi~~~Dta~~Yg~g~se~~lg~~l~~~~r~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~ 114 (249)
.+...+++...++ ..+-++|.-..-- ..+..+-++|......=+++.||..- .+.....+.
T Consensus 90 ~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~--~~D~em~~~l~~~~i~~~vv~tK~DK-----------i~~~~~~k~ 156 (200)
T COG0218 90 KEKWKKLIEEYLEKRANLKGVVLLIDARHPPK--DLDREMIEFLLELGIPVIVVLTKADK-----------LKKSERNKQ 156 (200)
T ss_pred HHHHHHHHHHHHhhchhheEEEEEEECCCCCc--HHHHHHHHHHHHcCCCeEEEEEcccc-----------CChhHHHHH
Confidence 4556666666653 3455678665443 46778888888878888999999763 335667778
Q ss_pred HHHHHHHcCCCceeE--EEeecCCCCCCHHHHHHHHHHHHHc
Q 025707 115 CEASLRRLDVEYIDL--YYQHRVDTSVPIEETIGEMKKLVEE 154 (249)
Q Consensus 115 ~~~sL~~Lg~d~iDl--~~lh~~~~~~~~~~~~~~l~~l~~~ 154 (249)
+....+.|+.+..|- +.+........+++++..+.+...+
T Consensus 157 l~~v~~~l~~~~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 157 LNKVAEELKKPPPDDQWVVLFSSLKKKGIDELKAKILEWLKE 198 (200)
T ss_pred HHHHHHHhcCCCCccceEEEEecccccCHHHHHHHHHHHhhc
Confidence 889999998877775 5555555566788888888776543
No 176
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=47.10 E-value=1.1e+02 Score=27.10 Aligned_cols=64 Identities=9% Similarity=0.129 Sum_probs=43.0
Q ss_pred eeEEEcCCCCHHHHHHHhhc-CCceEEeeecCccccch-hhhHHHHHHHhCCcEEecccCcccccC
Q 025707 157 IKYIGLSEASPDTIRRAHAV-HPITAVQLEWSLWARDI-ENEIVPLCRELGIGIVPYCPLGRGFFG 220 (249)
Q Consensus 157 ir~iGvs~~~~~~l~~~~~~-~~~~~~q~~~n~~~~~~-~~~~~~~~~~~gi~v~a~spl~~G~l~ 220 (249)
++..-+...+++.+++++.. .+..++..+.|+..... .+++.+.|+++|+.++.=..++.+++.
T Consensus 116 ~~v~~vd~~d~~~l~~~i~~~tklv~le~P~NP~~~~~dl~~I~~la~~~g~~lIvD~t~~~~~~~ 181 (366)
T PRK08247 116 VRFVYVNTASLKAIEQAITPNTKAIFIETPTNPLMQETDIAAIAKIAKKHGLLLIVDNTFYTPVLQ 181 (366)
T ss_pred ceEEEECCCCHHHHHHhcccCceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCcccccc
Confidence 44445555677788777643 44556666777754322 388999999999999987777655543
No 177
>PF07476 MAAL_C: Methylaspartate ammonia-lyase C-terminus; InterPro: IPR022662 Methylaspartate ammonia-lyase 4.3.1.2 from EC catalyses the second step of fermentation of glutamate. It is a homodimer. This domain represents the C-terminal region of methylaspartate ammonia-lyase and contains a TIM barrel fold similar to the PF01188 from PFAM. This domain represents the catalytic domain and contains a metal binding site []. ; PDB: 1KKO_B 1KKR_A 3ZVI_A 1KD0_B 1KCZ_B 3ZVH_A.
Probab=46.96 E-value=66 Score=26.86 Aligned_cols=100 Identities=19% Similarity=0.135 Sum_probs=56.3
Q ss_pred CHHHHHHHHHHHHHHcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHc----CCeeEEEcCCC--CHHHHHHHhhcCCce
Q 025707 107 TPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEE----GKIKYIGLSEA--SPDTIRRAHAVHPIT 180 (249)
Q Consensus 107 s~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~----G~ir~iGvs~~--~~~~l~~~~~~~~~~ 180 (249)
+++.+-.-+.+.-+.-.- | -+.+..|-+....++.+++|.+|++. |.--.|-.-.| +.+.+.++.+....+
T Consensus 87 d~~~~adYl~~l~~aA~P-~--~L~iEgP~d~g~r~~QI~~l~~Lr~~L~~~g~~v~iVADEWCNT~eDI~~F~da~A~d 163 (248)
T PF07476_consen 87 DPDRMADYLAELEEAAAP-F--KLRIEGPMDAGSREAQIEALAELREELDRRGINVEIVADEWCNTLEDIREFADAKAAD 163 (248)
T ss_dssp -HHHHHHHHHHHHHHHTT-S---EEEE-SB--SSHHHHHHHHHHHHHHHHHCT--EEEEE-TT--SHHHHHHHHHTT-SS
T ss_pred CHHHHHHHHHHHHHhcCC-C--eeeeeCCcCCCChHHHHHHHHHHHHHHHhcCCCCeEEeehhcCCHHHHHHHHhcCCcC
Confidence 455554444444443331 1 26778888877888888888777654 44334444445 457888888887888
Q ss_pred EEeeecCccccch-hhhHHHHHHHhCCcEE
Q 025707 181 AVQLEWSLWARDI-ENEIVPLCRELGIGIV 209 (249)
Q Consensus 181 ~~q~~~n~~~~~~-~~~~~~~~~~~gi~v~ 209 (249)
.+|+-.--+-.-. .-+.+-+|+++|++..
T Consensus 164 mVQIKtPDLGgi~ntieAvlyCk~~gvgaY 193 (248)
T PF07476_consen 164 MVQIKTPDLGGINNTIEAVLYCKEHGVGAY 193 (248)
T ss_dssp EEEE-GGGGSSTHHHHHHHHHHHHTT-EEE
T ss_pred EEEecCCCccchhhHHHHHHHHHhcCCcee
Confidence 9999643222111 1567889999999854
No 178
>PRK09358 adenosine deaminase; Provisional
Probab=46.13 E-value=2e+02 Score=25.07 Aligned_cols=99 Identities=12% Similarity=0.024 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCCeeEEEcCCC-CHHHHHHHhhcCCceEEeeec
Q 025707 108 PEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEA-SPDTIRRAHAVHPITAVQLEW 186 (249)
Q Consensus 108 ~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~-~~~~l~~~~~~~~~~~~q~~~ 186 (249)
++...+.++..++...-+.+--+-++.+......+...+.++.+++.|.--.+=++.. +++.+..++...+++-+-.-+
T Consensus 148 ~~~~~~~~~~~~~~~~~~~vvg~~l~g~e~~~~~~~~~~~~~~A~~~g~~~~~H~~E~~~~~~~~~al~~lg~~ri~Hg~ 227 (340)
T PRK09358 148 EEAAARELEALAARYRDDGVVGFDLAGDELGFPPSKFARAFDRARDAGLRLTAHAGEAGGPESIWEALDELGAERIGHGV 227 (340)
T ss_pred HHHHHHHHHHHHHHhcCCcEEEEeCCCcCCCCCHHHHHHHHHHHHHCCCCeEEcCCCCCchhHHHHHHHHcCCcccchhh
Confidence 4555566666665422222222223334333445666777778888876555544433 234455555432333222212
Q ss_pred CccccchhhhHHHHHHHhCCcEE
Q 025707 187 SLWARDIENEIVPLCRELGIGIV 209 (249)
Q Consensus 187 n~~~~~~~~~~~~~~~~~gi~v~ 209 (249)
.+.. ..++++..+++|+.|.
T Consensus 228 ~l~~---~~~~~~~l~~~gi~v~ 247 (340)
T PRK09358 228 RAIE---DPALMARLADRRIPLE 247 (340)
T ss_pred hhcc---CHHHHHHHHHcCCeEE
Confidence 2211 2568999999998864
No 179
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=46.07 E-value=33 Score=25.15 Aligned_cols=28 Identities=14% Similarity=0.307 Sum_probs=25.2
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCCCCcC
Q 025707 39 LSEEDGISIIKHAFSKGITFFDTADKYG 66 (249)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg 66 (249)
.+.+.+.+....+++.|++.||.+..|-
T Consensus 74 ~~~~~~~~~~~~~~~~g~~ViD~s~~~R 101 (121)
T PF01118_consen 74 LPHGASKELAPKLLKAGIKVIDLSGDFR 101 (121)
T ss_dssp SCHHHHHHHHHHHHHTTSEEEESSSTTT
T ss_pred CchhHHHHHHHHHhhCCcEEEeCCHHHh
Confidence 3678899999999999999999999985
No 180
>PLN02428 lipoic acid synthase
Probab=45.91 E-value=2.2e+02 Score=25.43 Aligned_cols=157 Identities=13% Similarity=0.254 Sum_probs=85.1
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCCC----CcCCCchHHHHHHHHHcCCC--CCeEEEecccccccCCcccccCCCHHHH-
Q 025707 39 LSEEDGISIIKHAFSKGITFFDTAD----KYGPYTNEILLGKALKELPR--ENIQVATKFGFVELGFTSVIVKGTPEYV- 111 (249)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~Dta~----~Yg~g~se~~lg~~l~~~~r--~~~~I~tK~~~~~~~~~~~~~~~s~~~i- 111 (249)
.+.++..++.+.+.+.|++++=... .|.++.++ .+.+.++.+.+ ..+.|.. + +++.+
T Consensus 130 ~d~~Ep~~vA~~v~~~Glk~vvltSg~rddl~D~ga~-~~~elir~Ir~~~P~i~Ie~-L--------------~pdf~~ 193 (349)
T PLN02428 130 PDPDEPENVAEAIASWGVDYVVLTSVDRDDLPDGGSG-HFAETVRRLKQLKPEILVEA-L--------------VPDFRG 193 (349)
T ss_pred CChhhHHHHHHHHHHcCCCEEEEEEcCCCCCCcccHH-HHHHHHHHHHHhCCCcEEEE-e--------------CccccC
Confidence 3567777888888899998774321 23333333 33344443221 1232222 1 11111
Q ss_pred HHHHHHHHHHcCCCceeEEEeecCCCC-----------CCHHHHHHHHHHHHHc--CCee----EEEcCCCCHHHHHHHh
Q 025707 112 RSCCEASLRRLDVEYIDLYYQHRVDTS-----------VPIEETIGEMKKLVEE--GKIK----YIGLSEASPDTIRRAH 174 (249)
Q Consensus 112 ~~~~~~sL~~Lg~d~iDl~~lh~~~~~-----------~~~~~~~~~l~~l~~~--G~ir----~iGvs~~~~~~l~~~~ 174 (249)
...+-+.|..-| +|. +-|+++.. ...++.++.++.+++. |..- -+|+ .-+.+.+.+.+
T Consensus 194 d~elL~~L~eAG---~d~-i~hnlETv~rL~~~Ir~~~~sye~~Le~L~~ak~~~pGi~tkSg~MvGL-GET~Edv~e~l 268 (349)
T PLN02428 194 DLGAVETVATSG---LDV-FAHNIETVERLQRIVRDPRAGYKQSLDVLKHAKESKPGLLTKTSIMLGL-GETDEEVVQTM 268 (349)
T ss_pred CHHHHHHHHHcC---CCE-EccCccCcHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEec-CCCHHHHHHHH
Confidence 122223333445 455 34666542 2467789999999887 7653 2466 45555555544
Q ss_pred hc---CCceEEee-ec----------Ccc-ccchhhhHHHHHHHhCCcEEecccCcc
Q 025707 175 AV---HPITAVQL-EW----------SLW-ARDIENEIVPLCRELGIGIVPYCPLGR 216 (249)
Q Consensus 175 ~~---~~~~~~q~-~~----------n~~-~~~~~~~~~~~~~~~gi~v~a~spl~~ 216 (249)
.. .+++.+.+ +| +-+ .+.....+-+++.+.|...++.+||-.
T Consensus 269 ~~Lrelgvd~vtigqyL~Ps~~h~~v~~~v~p~~f~~~~~~~~~~gf~~v~sgp~vr 325 (349)
T PLN02428 269 EDLRAAGVDVVTFGQYLRPTKRHLPVKEYVTPEKFEFWREYGEEMGFRYVASGPLVR 325 (349)
T ss_pred HHHHHcCCCEEeeccccCCCcceeeeecccCHHHHHHHHHHHHHcCCceEEecCccc
Confidence 33 44444433 22 222 222237788899999999999999864
No 181
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=45.87 E-value=1.5e+02 Score=25.65 Aligned_cols=94 Identities=20% Similarity=0.245 Sum_probs=58.6
Q ss_pred HHHcCCCceeEEEeecCCCCCCHHHH-----HHHHHHHHHcCCeeEEEcCCCCHH-------HHHHHhhcCCceEEeeec
Q 025707 119 LRRLDVEYIDLYYQHRVDTSVPIEET-----IGEMKKLVEEGKIKYIGLSEASPD-------TIRRAHAVHPITAVQLEW 186 (249)
Q Consensus 119 L~~Lg~d~iDl~~lh~~~~~~~~~~~-----~~~l~~l~~~G~ir~iGvs~~~~~-------~l~~~~~~~~~~~~q~~~ 186 (249)
++-+.-..+|++.+..+.......+. -+.+.+..++--=|++|+.+.++. .+++......+.-+++
T Consensus 55 ~~~~~~~~i~~~~~~~~~~~~~~~d~~~~~~nd~~a~~~~~~pdrf~~~~~v~p~~~~~a~~E~er~v~~~gf~g~~l-- 132 (293)
T COG2159 55 LAFMDAAGIDLFVLSGMGEVAIIPDLRRALANDDLAALAAEYPDRFVGFARVDPRDPEAAAEELERRVRELGFVGVKL-- 132 (293)
T ss_pred HhhhcccccceEEeeccccccchHHHhhhhhhHHHHHHHhhCCcceeeeeeeCCCchHHHHHHHHHHHHhcCceEEEe--
Confidence 67778888899888852222222222 246777777777789999887664 3444444444444444
Q ss_pred Cccccc------hhhhHHHHHHHhCCcEEecccC
Q 025707 187 SLWARD------IENEIVPLCRELGIGIVPYCPL 214 (249)
Q Consensus 187 n~~~~~------~~~~~~~~~~~~gi~v~a~spl 214 (249)
+..... ....++++|.++|+.|+-....
T Consensus 133 ~p~~~~~~~~~~~~~pi~~~a~~~gvpv~ihtG~ 166 (293)
T COG2159 133 HPVAQGFYPDDPRLYPIYEAAEELGVPVVIHTGA 166 (293)
T ss_pred cccccCCCCCChHHHHHHHHHHHcCCCEEEEeCC
Confidence 322211 1266999999999999985444
No 182
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=45.77 E-value=2.1e+02 Score=25.08 Aligned_cols=134 Identities=11% Similarity=0.069 Sum_probs=78.2
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCC----------CCcCC--CchHHHHHHHHHcC-CCCCeEEEecccccccCCcccccCC
Q 025707 40 SEEDGISIIKHAFSKGITFFDTA----------DKYGP--YTNEILLGKALKEL-PRENIQVATKFGFVELGFTSVIVKG 106 (249)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~Dta----------~~Yg~--g~se~~lg~~l~~~-~r~~~~I~tK~~~~~~~~~~~~~~~ 106 (249)
+.++..++.+.+.+.|+..||.- ..+|. ...-+.+.+.++.. ..-++-|+.|+...+. .
T Consensus 75 ~~~~~~~aa~~~~~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a~d~pv~vKiR~G~~--------~ 146 (321)
T PRK10415 75 DPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNAVDVPVTLKIRTGWA--------P 146 (321)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHHhcCCceEEEEEcccc--------C
Confidence 57777788888888999999942 12221 11233444444431 1113446667643221 1
Q ss_pred CHHHHHHHHHHHHHHcCCCceeEEEeecCCCCCCH--HHHHHHHHHHHHcCCeeEEEcCCC-CHHHHHHHhhcCCceEEe
Q 025707 107 TPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPI--EETIGEMKKLVEEGKIKYIGLSEA-SPDTIRRAHAVHPITAVQ 183 (249)
Q Consensus 107 s~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~--~~~~~~l~~l~~~G~ir~iGvs~~-~~~~l~~~~~~~~~~~~q 183 (249)
+.... ..+-+.++..|+ |.+.+|........ ..-|+.+.++++.=.|--||.... +++.++++++....+.++
T Consensus 147 ~~~~~-~~~a~~le~~G~---d~i~vh~rt~~~~~~G~a~~~~i~~ik~~~~iPVI~nGgI~s~~da~~~l~~~gadgVm 222 (321)
T PRK10415 147 EHRNC-VEIAQLAEDCGI---QALTIHGRTRACLFNGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALM 222 (321)
T ss_pred CcchH-HHHHHHHHHhCC---CEEEEecCccccccCCCcChHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHhccCCCEEE
Confidence 11111 123344667776 55677875432211 124777888888777888888765 778888888777777777
Q ss_pred ee
Q 025707 184 LE 185 (249)
Q Consensus 184 ~~ 185 (249)
+-
T Consensus 223 iG 224 (321)
T PRK10415 223 IG 224 (321)
T ss_pred EC
Confidence 74
No 183
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=45.62 E-value=1.1e+02 Score=28.06 Aligned_cols=89 Identities=15% Similarity=0.211 Sum_probs=56.0
Q ss_pred HHHHcCCCceeEEEeecCCC-CCCHHHHHHHHHHHHHcCCeeEEEcCCCCHHHHHHHhhc--------CCceEEeeecCc
Q 025707 118 SLRRLDVEYIDLYYQHRVDT-SVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAV--------HPITAVQLEWSL 188 (249)
Q Consensus 118 sL~~Lg~d~iDl~~lh~~~~-~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~--------~~~~~~q~~~n~ 188 (249)
.++.+|++|. ++..|.. ... ..+-...+-+.|-...+|....+++++++.+.. .|+-++-+ +++
T Consensus 6 f~~~lgiryP---ii~gpMa~Gis---s~eLVaAvs~AGgLG~lgag~l~~e~l~~~I~~ir~~lt~~~PfGVNL~-~~~ 78 (418)
T cd04742 6 FKEDYGLRYA---YVAGAMARGIA---SAELVVAMGKAGMLGFFGAGGLPLDEVEQAIERIQAALGNGEPYGVNLI-HSP 78 (418)
T ss_pred HHHHhCCCcc---EECCcccCCCC---CHHHHHHHHhCCCeeeecCCCCCHHHHHHHHHHHHHhccCCCCeEEeee-cCC
Confidence 4567788765 3344433 122 223344566889999999999999888877644 13443332 222
Q ss_pred cccchhhhHHHHHHHhCCcEEeccc
Q 025707 189 WARDIENEIVPLCRELGIGIVPYCP 213 (249)
Q Consensus 189 ~~~~~~~~~~~~~~~~gi~v~a~sp 213 (249)
-++..+...++.+.++||.++..+-
T Consensus 79 ~~~~~e~~~v~l~le~gV~~ve~sa 103 (418)
T cd04742 79 DEPELEEGLVDLFLRHGVRVVEASA 103 (418)
T ss_pred CCchhHHHHHHHHHHcCCCEEEecc
Confidence 2222236789999999999887654
No 184
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=45.38 E-value=1.9e+02 Score=24.48 Aligned_cols=99 Identities=16% Similarity=0.121 Sum_probs=62.6
Q ss_pred CCHHHHHHHHHHHHHHcCCCceeEEEe-ecCCCC-CCHH----HHHHHHHHHHHc-CCeeEEEcCCCCHHHHHHHhhcCC
Q 025707 106 GTPEYVRSCCEASLRRLDVEYIDLYYQ-HRVDTS-VPIE----ETIGEMKKLVEE-GKIKYIGLSEASPDTIRRAHAVHP 178 (249)
Q Consensus 106 ~s~~~i~~~~~~sL~~Lg~d~iDl~~l-h~~~~~-~~~~----~~~~~l~~l~~~-G~ir~iGvs~~~~~~l~~~~~~~~ 178 (249)
.+++.+.+.+++.+ .-|.+.||+--. -+|+.. ...+ .+...++.+++. +. -+.+-+++++.++++++...
T Consensus 20 ~~~~~~~~~a~~~~-~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~~~--plsiDT~~~~vi~~al~~G~ 96 (257)
T TIGR01496 20 LSVDKAVAHAERML-EEGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQPDV--PISVDTYRAEVARAALEAGA 96 (257)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCC--eEEEeCCCHHHHHHHHHcCC
Confidence 35666666666554 568999999422 223221 1222 255555666655 43 48889999999999998742
Q ss_pred ceEEeeecCccccchhhhHHHHHHHhCCcEEecc
Q 025707 179 ITAVQLEWSLWARDIENEIVPLCRELGIGIVPYC 212 (249)
Q Consensus 179 ~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~s 212 (249)
.-++- .+... ..++++.+++.|..++.+.
T Consensus 97 ~iINs--is~~~---~~~~~~l~~~~~~~vV~m~ 125 (257)
T TIGR01496 97 DIIND--VSGGQ---DPAMLEVAAEYGVPLVLMH 125 (257)
T ss_pred CEEEE--CCCCC---CchhHHHHHHcCCcEEEEe
Confidence 22222 23322 3679999999999999954
No 185
>PRK05968 hypothetical protein; Provisional
Probab=44.72 E-value=1.2e+02 Score=27.16 Aligned_cols=55 Identities=7% Similarity=0.009 Sum_probs=39.0
Q ss_pred CCCHHHHHHHhhcCCceEEeeecCccccchh-hhHHHHHHHhCCcEEecccCcccc
Q 025707 164 EASPDTIRRAHAVHPITAVQLEWSLWARDIE-NEIVPLCRELGIGIVPYCPLGRGF 218 (249)
Q Consensus 164 ~~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~-~~~~~~~~~~gi~v~a~spl~~G~ 218 (249)
..+++.+++++...++.+++.+.|+.-.... .++.+.|+++|+.++.=..++.+.
T Consensus 135 ~~d~~~l~~~i~~tklV~ie~pt~~~~~~~dl~~i~~la~~~gi~vivD~a~a~~~ 190 (389)
T PRK05968 135 GRDEEAVAKALPGAKLLYLESPTSWVFELQDVAALAALAKRHGVVTMIDNSWASPV 190 (389)
T ss_pred CCCHHHHHHhcccCCEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCcchh
Confidence 3467777777654566677777776644333 789999999999999777666554
No 186
>TIGR00048 radical SAM enzyme, Cfr family. A Staphylococcus sciuri plasmid-borne member of this family, Cfr, has been identified as essential to transferrable resistance to chloramphenicol and florfenicol by an unknown mechanism. A 14-15 residue cluster with four perfectly conserved Cys residues suggests this protein may be an enzyme with an iron-sulfur cluster. The Cys cluster is part of the radical SAM domain, suggested to provide a general mechanism by which the Fe-S center cleaves S-adenosylmethionine to initiate radical-based catalysis. Members of this family lack apparent transmembrane domains.
Probab=44.64 E-value=2.3e+02 Score=25.27 Aligned_cols=94 Identities=11% Similarity=0.172 Sum_probs=58.3
Q ss_pred EEEeecCCCC-----------CCHHHHHHHHHHHHH-cC---CeeEEEcCC--CCHHHHHHH---hhcCCceEEeeecCc
Q 025707 129 LYYQHRVDTS-----------VPIEETIGEMKKLVE-EG---KIKYIGLSE--ASPDTIRRA---HAVHPITAVQLEWSL 188 (249)
Q Consensus 129 l~~lh~~~~~-----------~~~~~~~~~l~~l~~-~G---~ir~iGvs~--~~~~~l~~~---~~~~~~~~~q~~~n~ 188 (249)
.+-||.+++. .+++++++++.++.+ .| +|+++=+.. -+.+.+.++ +...++.++-++||.
T Consensus 218 aiSL~a~~~e~r~~l~p~~~~~~l~~ll~~l~~~~~~~g~~VtieyvLI~GvNDs~e~a~~La~llk~l~~~VnLIPynp 297 (355)
T TIGR00048 218 AISLHAPNDELRSSLMPINKKYNIETLLAAVRRYLNKTGRRVTFEYVLLDGVNDQVEHAEELAELLKGTKCKVNLIPWNP 297 (355)
T ss_pred EEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHHhCCEEEEEEEEECCCCCCHHHHHHHHHHHhcCCCceEEEeccc
Confidence 4778998753 236888888877654 33 244443433 334555444 333556777789998
Q ss_pred cccc----hh----hhHHHHHHHhCCcEEecccC------cccccCCC
Q 025707 189 WARD----IE----NEIVPLCRELGIGIVPYCPL------GRGFFGGK 222 (249)
Q Consensus 189 ~~~~----~~----~~~~~~~~~~gi~v~a~spl------~~G~l~g~ 222 (249)
+... .. ..+.++.+++|+.|...... ++|.|..+
T Consensus 298 ~~~~~~~~ps~e~i~~f~~~L~~~gi~v~iR~~~G~di~aaCGqL~~~ 345 (355)
T TIGR00048 298 FPEADYERPSNEQIDRFAKTLMSYGFTVTIRKSRGDDIDAACGQLRAK 345 (355)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCcchhhcCCcchhh
Confidence 6531 11 45667778889999988776 45666544
No 187
>PTZ00124 adenosine deaminase; Provisional
Probab=44.54 E-value=2.3e+02 Score=25.33 Aligned_cols=154 Identities=8% Similarity=0.087 Sum_probs=75.4
Q ss_pred HHHHHHHHHHcCCCeEeC--CCCcC---CCc-hHHHHHHHHHc---CCCC-CeEEEecccccccCCcccccCCCHHHHHH
Q 025707 44 GISIIKHAFSKGITFFDT--ADKYG---PYT-NEILLGKALKE---LPRE-NIQVATKFGFVELGFTSVIVKGTPEYVRS 113 (249)
Q Consensus 44 ~~~~l~~A~~~Gi~~~Dt--a~~Yg---~g~-se~~lg~~l~~---~~r~-~~~I~tK~~~~~~~~~~~~~~~s~~~i~~ 113 (249)
+.+.++.+.+.|+.+.+. +|.+. .|. .+..+-..++. ..++ +.-|..++=... ....+++...+
T Consensus 108 a~e~~~d~~~dgV~Y~Eir~~P~~~~~~~gl~~~~vv~av~~g~~~a~~~~~~gI~~~lI~~~------~R~~~~e~a~e 181 (362)
T PTZ00124 108 AKHAVFNKYKEGVVLMEFRYSPTFVAFKHNLDIDLIHQAIVKGIKEAVELLDHKIEVGLLCIG------DTGHDAAPIKE 181 (362)
T ss_pred HHHHHHHHHHcCCEEEEEEcCchhhhcCCCCCHHHHHHHHHHHHHHHHhccCCCceEeEEEEe------cCCCCHHHHHH
Confidence 344556677889999874 55442 232 33333333332 1111 344444442211 11245677777
Q ss_pred HHHHHHHHcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCCeeEEEcCC----CCHHHHHHHhhcCCceEEeeecCcc
Q 025707 114 CCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSE----ASPDTIRRAHAVHPITAVQLEWSLW 189 (249)
Q Consensus 114 ~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~----~~~~~l~~~~~~~~~~~~q~~~n~~ 189 (249)
.++..++.-. . ++-+.-..++.......+.++.+++.|.-..+=... .+.+.+..++....++=+-.-+++.
T Consensus 182 ~~~~a~~~~~--~--vvGiDLaG~E~~~~~f~~~f~~Ar~~Gl~~t~HaGE~~~~~~~~~v~~ai~~l~~~RIGHG~~~~ 257 (362)
T PTZ00124 182 SADFCLKHKA--D--FVGFDHAGHEVDLKPFKDIFDYVREAGVNLTVHAGEDVTLPNLNTLYSAIQVLKVKRIGHGIRVA 257 (362)
T ss_pred HHHHHHhccC--C--eEEEeccCCCCCcHHHHHHHHHHHHCCCCEEEEeCCCCCCCcchhHHHHHHHhCCCccccccccC
Confidence 7777776322 2 333332223333456778888889887655443332 1223333333221111111222222
Q ss_pred ccchhhhHHHHHHHhCCcEEe
Q 025707 190 ARDIENEIVPLCRELGIGIVP 210 (249)
Q Consensus 190 ~~~~~~~~~~~~~~~gi~v~a 210 (249)
. ...+++.+++++|++-.
T Consensus 258 ~---d~~l~~~l~~~~I~lEv 275 (362)
T PTZ00124 258 E---SQELIDMVKEKDILLEV 275 (362)
T ss_pred C---CHHHHHHHHHcCCeEEE
Confidence 2 25688888888887653
No 188
>COG3172 NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]
Probab=44.50 E-value=1.2e+02 Score=24.26 Aligned_cols=98 Identities=13% Similarity=0.078 Sum_probs=65.0
Q ss_pred HcCCCeEeCCC--------CcCCCchHHHHHHHHHcCCCCCeEEEecccccccCCcccc--cCCCHHHHHHHHHHHHHHc
Q 025707 53 SKGITFFDTAD--------KYGPYTNEILLGKALKELPRENIQVATKFGFVELGFTSVI--VKGTPEYVRSCCEASLRRL 122 (249)
Q Consensus 53 ~~Gi~~~Dta~--------~Yg~g~se~~lg~~l~~~~r~~~~I~tK~~~~~~~~~~~~--~~~s~~~i~~~~~~sL~~L 122 (249)
..+|-++||-. .|- |+.+..+-+.+.+ .|-+++|.+.--..+..++... ...++..+.+-+++.|++-
T Consensus 78 a~~v~fiDTD~itT~~~~~~y~-gr~~P~~~~~i~~-~r~DL~lLl~p~t~wvaDG~R~~~~~~~R~~F~~~l~~~L~~~ 155 (187)
T COG3172 78 ANKVAFIDTDFLTTQAFCKKYE-GREHPFLQALIAE-YRFDLTLLLEPNTPWVADGLRSLGSSVQRQEFQNLLEQMLEEN 155 (187)
T ss_pred CCceEEEeccHHHHHHHHHHHc-ccCCchHHHHHhh-cccceEEEcCCCCceeCCCccccccHhHHHHHHHHHHHHHHHh
Confidence 34999999964 332 3445566666663 6777777776544443343222 2235778888999999999
Q ss_pred CCCceeEEEeecCCCCCCHHHHHHHHHHHHHcC
Q 025707 123 DVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEG 155 (249)
Q Consensus 123 g~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G 155 (249)
++.| +.+..++.......++++.+++..++
T Consensus 156 ~~~~---v~i~~~~y~eR~~~~~~aV~ell~~~ 185 (187)
T COG3172 156 NIPF---VVIEGEDYLERYLQAVEAVEELLGEK 185 (187)
T ss_pred CCcE---EEEcCCCHHHHHHHHHHHHHHHHhcc
Confidence 8876 45566666666777888888888775
No 189
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=44.35 E-value=1.6e+02 Score=24.12 Aligned_cols=88 Identities=16% Similarity=0.215 Sum_probs=53.9
Q ss_pred CHHHHHHHHHHHHHHcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCCeeEEEcCC-CCHHHHHHHhhcCCceEEeee
Q 025707 107 TPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSE-ASPDTIRRAHAVHPITAVQLE 185 (249)
Q Consensus 107 s~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~-~~~~~l~~~~~~~~~~~~q~~ 185 (249)
+++... .+-+.|-.-|++.+.+=+ + ....++.+++++++.-=-.||..+ .+.++.+.+.+.. -++.
T Consensus 18 ~~e~a~-~~~~al~~~Gi~~iEit~-~-------t~~a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~aG-A~Fi--- 84 (204)
T TIGR01182 18 DVDDAL-PLAKALIEGGLRVLEVTL-R-------TPVALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDAG-AQFI--- 84 (204)
T ss_pred CHHHHH-HHHHHHHHcCCCEEEEeC-C-------CccHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcC-CCEE---
Confidence 344443 345566777887666544 1 124555666666553324688866 5778888887752 2222
Q ss_pred cCccccchhhhHHHHHHHhCCcEEe
Q 025707 186 WSLWARDIENEIVPLCRELGIGIVP 210 (249)
Q Consensus 186 ~n~~~~~~~~~~~~~~~~~gi~v~a 210 (249)
.++ ....++++.|+++|+.++.
T Consensus 85 vsP---~~~~~v~~~~~~~~i~~iP 106 (204)
T TIGR01182 85 VSP---GLTPELAKHAQDHGIPIIP 106 (204)
T ss_pred ECC---CCCHHHHHHHHHcCCcEEC
Confidence 222 2247899999999998875
No 190
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=44.33 E-value=2.3e+02 Score=25.08 Aligned_cols=101 Identities=20% Similarity=0.172 Sum_probs=54.5
Q ss_pred CCCHHHHHHHHHHHHHHcCCCceeEEEe--------e-cCCCCCCHHHHHHHHHHHHHcCCeeEEEcCC---CCHHHHHH
Q 025707 105 KGTPEYVRSCCEASLRRLDVEYIDLYYQ--------H-RVDTSVPIEETIGEMKKLVEEGKIKYIGLSE---ASPDTIRR 172 (249)
Q Consensus 105 ~~s~~~i~~~~~~sL~~Lg~d~iDl~~l--------h-~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~---~~~~~l~~ 172 (249)
.++.+.+ ..+-+.|.+.|+++|.+-.. . .+.. .+-.+.++.+.+..+. .+...+.. .+.+.++.
T Consensus 20 ~f~~~~~-~~ia~~Ld~aGV~~IEvg~g~gl~g~s~~~G~~~-~~~~e~i~~~~~~~~~--~~~~~ll~pg~~~~~dl~~ 95 (333)
T TIGR03217 20 QFTIEQV-RAIAAALDEAGVDAIEVTHGDGLGGSSFNYGFSA-HTDLEYIEAAADVVKR--AKVAVLLLPGIGTVHDLKA 95 (333)
T ss_pred cCCHHHH-HHHHHHHHHcCCCEEEEecCCCCCCccccCCCCC-CChHHHHHHHHHhCCC--CEEEEEeccCccCHHHHHH
Confidence 3555554 45666699999999999522 1 1111 1222333333332222 33333322 25667777
Q ss_pred HhhcCCceEEeeecCccccchhhhHHHHHHHhCCcEEe
Q 025707 173 AHAVHPITAVQLEWSLWARDIENEIVPLCRELGIGIVP 210 (249)
Q Consensus 173 ~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a 210 (249)
+.+. +++.+.+..+.-+-+...+.+++++++|..+..
T Consensus 96 a~~~-gvd~iri~~~~~e~d~~~~~i~~ak~~G~~v~~ 132 (333)
T TIGR03217 96 AYDA-GARTVRVATHCTEADVSEQHIGMARELGMDTVG 132 (333)
T ss_pred HHHC-CCCEEEEEeccchHHHHHHHHHHHHHcCCeEEE
Confidence 6664 455555544433322237788999999987764
No 191
>PRK14459 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=44.17 E-value=2.4e+02 Score=25.41 Aligned_cols=88 Identities=15% Similarity=0.147 Sum_probs=58.2
Q ss_pred eEEEeecCCCC-----------CCHHHHHHHHHHHH-HcCC---eeEEEcC--CCCHHH---HHHHhhcC---CceEEee
Q 025707 128 DLYYQHRVDTS-----------VPIEETIGEMKKLV-EEGK---IKYIGLS--EASPDT---IRRAHAVH---PITAVQL 184 (249)
Q Consensus 128 Dl~~lh~~~~~-----------~~~~~~~~~l~~l~-~~G~---ir~iGvs--~~~~~~---l~~~~~~~---~~~~~q~ 184 (249)
=.+-||.++++ .+++++++++.++. +.|+ |.++=+. |-+.+. +.+++... +..++-+
T Consensus 240 LavSLha~d~e~R~~l~p~n~~~~l~~ll~a~~~~~~~~grrv~ieyvLi~GvNDs~e~a~~L~~llk~~~~~~~~VNLI 319 (373)
T PRK14459 240 LAVSLHAPDDELRDELVPVNTRWKVDEVLDAARYYADATGRRVSIEYALIRDINDQPWRADLLGKKLHGRGGGWVHVNLI 319 (373)
T ss_pred EEEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHHhCCEEEEEEEEeCCCCCCHHHHHHHHHHHhhccCCCeEEEEE
Confidence 45778998764 34788999988776 4353 5556554 334444 44444444 5678888
Q ss_pred ecCccccc--------hhhhHHHHHHHhCCcEEecccCc
Q 025707 185 EWSLWARD--------IENEIVPLCRELGIGIVPYCPLG 215 (249)
Q Consensus 185 ~~n~~~~~--------~~~~~~~~~~~~gi~v~a~spl~ 215 (249)
+||++... ......+..+++||.+......+
T Consensus 320 pyNp~~~~~y~~~~~~~~~~F~~~L~~~gi~~tiR~~~G 358 (373)
T PRK14459 320 PLNPTPGSKWTASPPEVEREFVRRLRAAGVPCTVRDTRG 358 (373)
T ss_pred ccCCCCCCCCcCCCHHHHHHHHHHHHHCCCeEEeeCCCC
Confidence 99986431 11567788889999999887764
No 192
>PRK00077 eno enolase; Provisional
Probab=44.09 E-value=2.6e+02 Score=25.64 Aligned_cols=96 Identities=10% Similarity=0.046 Sum_probs=64.4
Q ss_pred CCHHHHHHHHHHHHHHcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcC--CeeEEEcCC--CCHHHHHHHhhcCCceE
Q 025707 106 GTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEG--KIKYIGLSE--ASPDTIRRAHAVHPITA 181 (249)
Q Consensus 106 ~s~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G--~ir~iGvs~--~~~~~l~~~~~~~~~~~ 181 (249)
++++...+.+.+.++.+ ++.++..|-...+ |+.+.+|.++- .+.-+|=-. .++..+.++++....++
T Consensus 261 ~s~~e~~~~~~~l~e~y-----~i~~iEdPl~~~D----~~g~~~L~~~~~~~ipI~gdE~~~t~~~~~~~~i~~~a~d~ 331 (425)
T PRK00077 261 LTSEEMIDYLAELVDKY-----PIVSIEDGLDEND----WEGWKLLTEKLGDKVQLVGDDLFVTNTKRLKKGIEKGAANS 331 (425)
T ss_pred CCHHHHHHHHHHHHhhC-----CcEEEEcCCCCcc----HHHHHHHHHhcCCCCeEEcCCCccCCHHHHHHHHHhCCCCE
Confidence 46666666666666664 4677877754443 55556666553 455444332 46899999998888889
Q ss_pred EeeecCccccc-hhhhHHHHHHHhCCcEEe
Q 025707 182 VQLEWSLWARD-IENEIVPLCRELGIGIVP 210 (249)
Q Consensus 182 ~q~~~n~~~~~-~~~~~~~~~~~~gi~v~a 210 (249)
+|+..|-+-.- ...++.+.|+++|+.++.
T Consensus 332 v~ik~~~~GGitea~~ia~lA~~~gi~~~v 361 (425)
T PRK00077 332 ILIKVNQIGTLTETLDAIELAKRAGYTAVV 361 (425)
T ss_pred EEeCccccCCHHHHHHHHHHHHHcCCeEEE
Confidence 99987765321 127899999999998654
No 193
>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=44.01 E-value=1.3e+02 Score=26.88 Aligned_cols=75 Identities=7% Similarity=0.078 Sum_probs=45.8
Q ss_pred HHHHHHHHHcCCeeEEEcCCCCHHHHHHHhhc-CCceEEeeecCccccchh-hhHHHHHHHhCCcEEecccCccccc
Q 025707 145 IGEMKKLVEEGKIKYIGLSEASPDTIRRAHAV-HPITAVQLEWSLWARDIE-NEIVPLCRELGIGIVPYCPLGRGFF 219 (249)
Q Consensus 145 ~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~-~~~~~~q~~~n~~~~~~~-~~~~~~~~~~gi~v~a~spl~~G~l 219 (249)
...+..+.+.--++..-+...+++.++++++. .+..++..+.|+.-.-.. .++.+.|+++|+.++.=..++.+..
T Consensus 99 ~~~~~~~~~~~G~~v~~vd~~d~~~le~~i~~~tklv~le~psnptg~v~dl~~I~~la~~~g~~vivD~a~~~~~~ 175 (378)
T TIGR01329 99 DRLLTQVVPRSGVVVVHVDTTDLDKVKAALGPKTKLVLLESPTNPLQKIVDIRKISEMAHAQNALVVVDNTMMSPLL 175 (378)
T ss_pred HHHHHHHHHHcCcEEEEeCCCCHHHHHHhcCcCceEEEEECCCCCCCeeecHHHHHHHHHHcCCEEEEECCCccccc
Confidence 33334433332344444444567788777653 445566667776543322 7899999999999997777655543
No 194
>PF01175 Urocanase: Urocanase; InterPro: IPR023637 Urocanase [] (also known as imidazolonepropionate hydrolase or urocanate hydratase) is the enzyme that catalyzes the second step in the degradation of histidine, the hydration of urocanate into imidazolonepropionate. urocanate + H2O = 4,5-dihydro-4-oxo-5-imidazolepropanoate Urocanase is found in some bacteria (gene hutU), in the liver of many vertebrates and has also been found in the plant Trifolium repens (white clover). Urocanase is a protein of about 60 Kd, it binds tightly to NAD+ and uses it as an electrophil cofactor. A conserved cysteine has been found to be important for the catalytic mechanism and could be involved in the binding of the NAD+. This enzyme is a symmetric homodimer with tightly bound NAD+ cofactors. Each subunit consists of a typical NAD-binding domain inserted into a larger core domain that forms the dimer interface []. This entry represents the Urocanase subunit structural domain.; GO: 0016153 urocanate hydratase activity; PDB: 2V7G_A 1UWK_A 1UWL_B 1W1U_B 2FKN_C 1X87_B.
Probab=43.96 E-value=60 Score=30.43 Aligned_cols=125 Identities=19% Similarity=0.188 Sum_probs=70.3
Q ss_pred HHHHHHcCCCeEe--CCCCcCC--------CchHHHHHHHHHc---CCCCCeEEEecccccccCCc---------ccccC
Q 025707 48 IKHAFSKGITFFD--TADKYGP--------YTNEILLGKALKE---LPRENIQVATKFGFVELGFT---------SVIVK 105 (249)
Q Consensus 48 l~~A~~~Gi~~~D--ta~~Yg~--------g~se~~lg~~l~~---~~r~~~~I~tK~~~~~~~~~---------~~~~~ 105 (249)
.+...+.|+..+- ||..|.. |.-|.++.-+-+. ..+.++++++-++-.....+ ....+
T Consensus 108 f~~l~~~GltmYGQMTAGsw~YIG~QGIvqGTyeT~~~aark~~g~~L~Gk~~lTaGLGGMgGAQplA~~m~g~v~l~vE 187 (546)
T PF01175_consen 108 FERLEALGLTMYGQMTAGSWIYIGPQGIVQGTYETFLNAARKHFGGDLAGKLFLTAGLGGMGGAQPLAATMAGGVGLIVE 187 (546)
T ss_dssp HHHHHHTT---B-TTTTTTT---TTHHHHHHHHHHHHHHHHHHSTTS-TT-EEEEE--STTCCHHHHHHHHTT-EEEEEE
T ss_pred HHHHHhccchhhccccccceEEEcccceeehhhHHHHHHHHHhcCCCCcceEEEEecccccccchHHHHHhcCceEEEEE
Confidence 4555677887663 5555532 3444444433332 46788999998876542210 11233
Q ss_pred CCHHHHHHHHHHHHHHcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCCHHHHHHHhhc---CCceEE
Q 025707 106 GTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAV---HPITAV 182 (249)
Q Consensus 106 ~s~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~---~~~~~~ 182 (249)
.+++.|+ +|+.+.|+|.+. .++++++...++.+++|+..+||+-..-.+.++++.+. ..+..-
T Consensus 188 vd~~ri~-------kR~~~g~ld~~~-------~~ldea~~~~~ea~~~~~~~SIg~~GN~ad~~~~l~~~~i~pDl~tD 253 (546)
T PF01175_consen 188 VDPSRIE-------KRLEQGYLDEVT-------DDLDEALARAKEARAKKEPLSIGLLGNAADLWEELVERGIIPDLVTD 253 (546)
T ss_dssp S-HHHHH-------HHHHTTSSSEEE-------SSHHHHHHHHHHHHHTT--EEEEEES-HHHHHHHHHHTT---SEE--
T ss_pred ECHHHHH-------HHHhCCCeeEEc-------CCHHHHHHHHHHhhccCCeeEEEEeccHHHHHHHHHHcCCCCCcccC
Confidence 4455554 456677888653 45899999999999999999999999888888888876 334455
Q ss_pred eeec
Q 025707 183 QLEW 186 (249)
Q Consensus 183 q~~~ 186 (249)
|.++
T Consensus 254 QTS~ 257 (546)
T PF01175_consen 254 QTSA 257 (546)
T ss_dssp -SST
T ss_pred CCcc
Confidence 6654
No 195
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=43.85 E-value=55 Score=30.24 Aligned_cols=58 Identities=16% Similarity=0.267 Sum_probs=40.8
Q ss_pred CCHHHHHHHHHHHHHHcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCCHHHHH
Q 025707 106 GTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIR 171 (249)
Q Consensus 106 ~s~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~ 171 (249)
.+.+...+.+.+.|+.||+++ |-+ ...+...+..-+.+++|+++|++ |...|+ .+.++
T Consensus 48 Rs~~~~~~~I~e~L~wLGI~~-De~----y~QSer~~~y~~~~e~L~e~G~A-Y~C~Ct--~eel~ 105 (445)
T PRK12558 48 RSKQEYADAIAEDLKWLGINW-DRT----FRQSDRFDRYDEAAEKLKAAGRL-YPCYET--PEELE 105 (445)
T ss_pred cchHHHHHHHHHHHHHcCCCC-Ccc----ccHHHHHHHHHHHHHHHHHCCCE-EEecCc--hHHHH
Confidence 456788899999999999974 742 22333455678889999999996 555554 34443
No 196
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=42.98 E-value=50 Score=27.79 Aligned_cols=76 Identities=14% Similarity=0.196 Sum_probs=46.7
Q ss_pred CCCcccCcceeeccc---ccCCCCCCCCHHHHHHH----HHHHHHcCCCeEeCCC--CcCCCchHHHHHHHHHc------
Q 025707 16 TQGLEVSKLGYGCMS---LSGCYNSPLSEEDGISI----IKHAFSKGITFFDTAD--KYGPYTNEILLGKALKE------ 80 (249)
Q Consensus 16 ~~g~~vs~lg~Gt~~---~~~~~~~~~~~~~~~~~----l~~A~~~Gi~~~Dta~--~Yg~g~se~~lg~~l~~------ 80 (249)
.+|+.+|.+||-+.+ ||+.. +...+++.++ +..|.+.|||.|--|. .|-...++++..++.++
T Consensus 65 etgv~ipSmClSaHRRfPfGS~D--~~~r~~aleiM~KaI~LA~dLGIRtIQLAGYDVYYE~~d~eT~~rFi~g~~~a~~ 142 (287)
T COG3623 65 ETGVRIPSMCLSAHRRFPFGSKD--EATRQQALEIMEKAIQLAQDLGIRTIQLAGYDVYYEEADEETRQRFIEGLKWAVE 142 (287)
T ss_pred HhCCCccchhhhhhccCCCCCCC--HHHHHHHHHHHHHHHHHHHHhCceeEeeccceeeeccCCHHHHHHHHHHHHHHHH
Confidence 578899999998753 33311 1234455554 4555689999998873 33223466666666655
Q ss_pred -CCCCCeEEEeccc
Q 025707 81 -LPRENIQVATKFG 93 (249)
Q Consensus 81 -~~r~~~~I~tK~~ 93 (249)
..+..+.++--+.
T Consensus 143 lA~~aqV~lAvEiM 156 (287)
T COG3623 143 LAARAQVMLAVEIM 156 (287)
T ss_pred HHHhhccEEEeeec
Confidence 3566776665543
No 197
>TIGR03820 lys_2_3_AblA lysine-2,3-aminomutase. This model describes lysine-2,3-aminomutase as found along with beta-lysine acetyltransferase in a two-enzyme pathway for making the compatible solute N-epsilon-acetyl-beta-lysine. This compatible solute, or osmolyte, is known to protect a number of methanogenic archaea against salt stress. The trusted cutoff distinguishes a tight clade with essentially full-length homology from additional homologs that are shorter or highly diverged in the C-terminal region. All members of this family have the radical SAM motif CXXXCXXC, while some but not all have a second copy of the motif in the C-terminal region.
Probab=42.94 E-value=2.7e+02 Score=25.57 Aligned_cols=108 Identities=9% Similarity=0.005 Sum_probs=62.1
Q ss_pred CHHHHHHHHHHHHHHcCCCceeEEEeecCCCCCCHHHHHHH-HHHHHHcCCeeEEEcCC---------CCHHHHHHHhhc
Q 025707 107 TPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGE-MKKLVEEGKIKYIGLSE---------ASPDTIRRAHAV 176 (249)
Q Consensus 107 s~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~-l~~l~~~G~ir~iGvs~---------~~~~~l~~~~~~ 176 (249)
+.+.+.+.++..-+..++ .-++|-.-|+....++.++. +++|++--.|+.|.+.+ .+. .+.+.++.
T Consensus 139 s~eei~~~i~yI~~~p~I---~~VlLSGGDPLll~d~~L~~iL~~L~~IphV~~IRI~TR~pvv~P~RIT~-ell~~Lk~ 214 (417)
T TIGR03820 139 SKEQILEGIEYIRNTPQI---RDVLLSGGDPLLLSDDYLDWILTELRAIPHVEVIRIGTRVPVVLPQRITD-ELVAILKK 214 (417)
T ss_pred CHHHHHHHHHHHHhcCCC---CEEEEeCCccccCChHHHHHHHHHHhhcCCCceEEEeeccccccccccCH-HHHHHHHh
Confidence 455666655555543333 33555554554333444454 56666655566554432 232 33333444
Q ss_pred CCceEEeeecCccccc--hhhhHHHHHHHhCCcEEecccCcccc
Q 025707 177 HPITAVQLEWSLWARD--IENEIVPLCRELGIGIVPYCPLGRGF 218 (249)
Q Consensus 177 ~~~~~~q~~~n~~~~~--~~~~~~~~~~~~gi~v~a~spl~~G~ 218 (249)
..+.++++.+|--..- ...+.++.+++.||.+..-++|-.|.
T Consensus 215 ~~~~~v~~h~nhp~Eit~~a~~Al~~L~~aGI~l~nQsVLLkGV 258 (417)
T TIGR03820 215 HHPVWLNTHFNHPREITASSKKALAKLADAGIPLGNQSVLLAGV 258 (417)
T ss_pred cCCeEEEEeCCChHhChHHHHHHHHHHHHcCCEEEeeceEECCc
Confidence 4566788877754211 11567777778899999999999994
No 198
>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=42.94 E-value=1.6e+02 Score=27.02 Aligned_cols=61 Identities=10% Similarity=0.051 Sum_probs=38.6
Q ss_pred eeEEEcCCCCHHHHHHHhhc-CCceEEeeecCccccch-hhhHHHHHHHhCCcEEecccCccc
Q 025707 157 IKYIGLSEASPDTIRRAHAV-HPITAVQLEWSLWARDI-ENEIVPLCRELGIGIVPYCPLGRG 217 (249)
Q Consensus 157 ir~iGvs~~~~~~l~~~~~~-~~~~~~q~~~n~~~~~~-~~~~~~~~~~~gi~v~a~spl~~G 217 (249)
++-+-+...+++.+++++.. .+..++..+.|+.-... ..++.++|+++|+.++.=..++.+
T Consensus 129 v~v~~vd~~d~e~l~~ai~~~tklV~l~sp~NPtG~v~di~~I~~la~~~gi~vIvD~t~a~~ 191 (431)
T PRK08248 129 ITVKFVDPSDPENFEAAITDKTKALFAETIGNPKGDVLDIEAVAAIAHEHGIPLIVDNTFASP 191 (431)
T ss_pred EEEEEECCCCHHHHHHhcCCCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEeCCCCcc
Confidence 44444444577788777653 34445555556543322 278899999999998876666544
No 199
>PRK13753 dihydropteroate synthase; Provisional
Probab=42.93 E-value=2.2e+02 Score=24.56 Aligned_cols=102 Identities=15% Similarity=0.123 Sum_probs=66.9
Q ss_pred CCHHHHHHHHHHHHHHcCCCceeEEEeec-CCCC-C----CHHHHHHHHHHHHHcCCeeEEEcCCCCHHHHHHHhhcCCc
Q 025707 106 GTPEYVRSCCEASLRRLDVEYIDLYYQHR-VDTS-V----PIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAVHPI 179 (249)
Q Consensus 106 ~s~~~i~~~~~~sL~~Lg~d~iDl~~lh~-~~~~-~----~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~ 179 (249)
.+++.+.+..++.+ .-|.|-||+----. |... . .+..+...++.+++.+. .|.+-++.++.++++++.. .
T Consensus 22 ~~~d~a~~~a~~m~-~~GAdIIDIGgeSTrPga~~vs~eeE~~Rv~pvI~~l~~~~~--~ISIDT~~~~va~~al~aG-a 97 (279)
T PRK13753 22 LDPAGAVTAAIEML-RVGSDVVDVGPAASHPDARPVSPADEIRRIAPLLDALSDQMH--RVSIDSFQPETQRYALKRG-V 97 (279)
T ss_pred CCHHHHHHHHHHHH-HCCCcEEEECCCCCCCCCCcCCHHHHHHHHHHHHHHHHhCCC--cEEEECCCHHHHHHHHHcC-C
Confidence 35666666666654 55788888876543 4332 2 23445577778887753 5899999999999998863 3
Q ss_pred eEEeeecCccccchhhhHHHHHHHhCCcEEecccCc
Q 025707 180 TAVQLEWSLWARDIENEIVPLCRELGIGIVPYCPLG 215 (249)
Q Consensus 180 ~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~spl~ 215 (249)
++ -++.+-.. ...+.+.+.+.+++++.+-..+
T Consensus 98 di-INDVsg~~---d~~~~~vva~~~~~vVlmH~~~ 129 (279)
T PRK13753 98 GY-LNDIQGFP---DPALYPDIAEADCRLVVMHSAQ 129 (279)
T ss_pred CE-EEeCCCCC---chHHHHHHHHcCCCEEEEecCC
Confidence 32 22222222 3678899999999999877543
No 200
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=42.81 E-value=2.1e+02 Score=24.28 Aligned_cols=28 Identities=21% Similarity=0.316 Sum_probs=23.2
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCC-CCcC
Q 025707 39 LSEEDGISIIKHAFSKGITFFDTA-DKYG 66 (249)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~Dta-~~Yg 66 (249)
.+.++..++++...++||..++.. |.+.
T Consensus 19 ~s~~~k~~i~~~L~~~Gv~~IEvG~P~~~ 47 (262)
T cd07948 19 FDTEDKIEIAKALDAFGVDYIELTSPAAS 47 (262)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEECCCCC
Confidence 478899999999999999999985 4443
No 201
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=42.67 E-value=1.5e+02 Score=24.73 Aligned_cols=69 Identities=12% Similarity=0.105 Sum_probs=50.0
Q ss_pred CCHHHHHHHHHHHHHHcCC--------------------------CceeEEEeecCCCCCCH---HHHHHHHHHHHHcCC
Q 025707 106 GTPEYVRSCCEASLRRLDV--------------------------EYIDLYYQHRVDTSVPI---EETIGEMKKLVEEGK 156 (249)
Q Consensus 106 ~s~~~i~~~~~~sL~~Lg~--------------------------d~iDl~~lh~~~~~~~~---~~~~~~l~~l~~~G~ 156 (249)
.+...+++.+++.-++|+. ...+++.+..|....++ ...-+.+.+++.+|+
T Consensus 105 l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr 184 (245)
T COG4555 105 LSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGR 184 (245)
T ss_pred hhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCc
Confidence 4455566666666666653 34567777766665554 457788899999998
Q ss_pred eeEEEcCCCCHHHHHHHhhc
Q 025707 157 IKYIGLSEASPDTIRRAHAV 176 (249)
Q Consensus 157 ir~iGvs~~~~~~l~~~~~~ 176 (249)
.+=+|+|..+.++++.+.
T Consensus 185 --~viFSSH~m~EvealCDr 202 (245)
T COG4555 185 --AVIFSSHIMQEVEALCDR 202 (245)
T ss_pred --EEEEecccHHHHHHhhhe
Confidence 788999999999988775
No 202
>PRK12569 hypothetical protein; Provisional
Probab=42.61 E-value=1.2e+02 Score=25.68 Aligned_cols=83 Identities=17% Similarity=0.272 Sum_probs=56.4
Q ss_pred eeecccccCCCCCCCCHHHHHHHHHHHH-HcCCCeEeCCCCcCCCchHHHHHHHHHcCCCCCeEEEecccccccC-Cccc
Q 025707 25 GYGCMSLSGCYNSPLSEEDGISIIKHAF-SKGITFFDTADKYGPYTNEILLGKALKELPRENIQVATKFGFVELG-FTSV 102 (249)
Q Consensus 25 g~Gt~~~~~~~~~~~~~~~~~~~l~~A~-~~Gi~~~Dta~~Yg~g~se~~lg~~l~~~~r~~~~I~tK~~~~~~~-~~~~ 102 (249)
+||.|.+|. ..+++...+|..|- ..| -+.| ...++.++++-.....+-|...-++++.. .++.
T Consensus 14 sfG~~~~g~-----~~D~~lmp~ItsaNIACG-------~HAG---Dp~~M~~tv~lA~~~~V~IGAHPsyPD~~gFGRr 78 (245)
T PRK12569 14 GFGPWRIGD-----GVDEALMPLISSANIATG-------FHAG---DPNIMRRTVELAKAHGVGIGAHPGFRDLVGFGRR 78 (245)
T ss_pred CCCCcCCCC-----ccHHHHHHHhhhHHHhcc-------ccCC---CHHHHHHHHHHHHHcCCEeccCCCCCcCCCCCCC
Confidence 678887753 12677888888875 334 3666 56677777765567778887777766543 3455
Q ss_pred ccCCCHHHHHHHHHHHHHHc
Q 025707 103 IVKGTPEYVRSCCEASLRRL 122 (249)
Q Consensus 103 ~~~~s~~~i~~~~~~sL~~L 122 (249)
.-..+++.++..+...+..|
T Consensus 79 ~m~~s~~el~~~v~yQigaL 98 (245)
T PRK12569 79 HINASPQELVNDVLYQLGAL 98 (245)
T ss_pred CCCCCHHHHHHHHHHHHHHH
Confidence 56778999888876666655
No 203
>TIGR00689 rpiB_lacA_lacB sugar-phosphate isomerases, RpiB/LacA/LacB family. Proteins of known function in this family act as sugar (pentose and/or hexose)-phosphate isomerases, including the LacA and LacB subunits of galactose-6-phosphate isomerases from Gram-positive bacteria and RpiB. RpiB is the second ribose phosphate isomerase of E. coli. It lacks homology to RpiA, its inducer is unknown (but is not ribose), and it can be replaced by the homologous galactose-6-phosphate isomerase of Streptococcus mutans, all of which suggests that the ribose phosphate isomerase activity of RpiB is a secondary function. On the other hand, there appear to be a significant number of species which contain rpiB, lack rpiA and seem to require rpi activity in order to copplete the pentose phosphate pathway.
Probab=42.51 E-value=1.6e+02 Score=22.73 Aligned_cols=97 Identities=15% Similarity=0.042 Sum_probs=71.1
Q ss_pred CCHHHHHHHHHHHHHHcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCCe-eEEEcCCCCHHHHHHHhhcCCceEEee
Q 025707 106 GTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKI-KYIGLSEASPDTIRRAHAVHPITAVQL 184 (249)
Q Consensus 106 ~s~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~i-r~iGvs~~~~~~l~~~~~~~~~~~~q~ 184 (249)
+.--.+++.+.+-|+..|-+.+|+=- +. ++..+..+....+.+.+.+|.. +.|-+|....-.-..+.+...+.+.++
T Consensus 7 haG~~lK~~l~~~L~~~g~eV~D~G~-~~-~~~~dYpd~a~~va~~V~~g~~~~GIliCGtGiG~siaANK~~GIraa~~ 84 (144)
T TIGR00689 7 HAGLELKSEIIEHLKQKGHEVIDCGT-LY-DERVDYPDYAKLVADKVVAGEVSLGILICGTGIGMSIAANKFKGIRAALC 84 (144)
T ss_pred cchHHHHHHHHHHHHHCCCEEEEcCC-CC-CCCCChHHHHHHHHHHHHcCCCceEEEEcCCcHHHHHHHhcCCCeEEEEE
Confidence 34566889999999999988888753 33 3446788888889999999998 888899888877666666666766665
Q ss_pred ecCccccchhhhHHHHHHHh-CCcEEecc
Q 025707 185 EWSLWARDIENEIVPLCREL-GIGIVPYC 212 (249)
Q Consensus 185 ~~n~~~~~~~~~~~~~~~~~-gi~v~a~s 212 (249)
. +......+++| +..|++..
T Consensus 85 ~--------d~~~A~~ar~hNnaNVl~lG 105 (144)
T TIGR00689 85 V--------DEYTAALARQHNDANVLCLG 105 (144)
T ss_pred C--------CHHHHHHHHHhcCCcEEEEC
Confidence 2 23345555555 77777766
No 204
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=42.45 E-value=1.4e+02 Score=25.47 Aligned_cols=98 Identities=13% Similarity=0.105 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCCHHHHHHHhhcCCceEEeeecCcccc
Q 025707 112 RSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAVHPITAVQLEWSLWAR 191 (249)
Q Consensus 112 ~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~ 191 (249)
+..+-+.|.++|+++|++-.+-.|.......+.-+.+..+.....++..++. .+...++++.+.. ++.+.+..+.-+.
T Consensus 22 K~~i~~~L~~~Gv~~IEvGs~~~~~~~p~~~d~~~~~~~l~~~~~~~~~~~~-~~~~dv~~A~~~g-~~~i~i~~~~Sd~ 99 (274)
T cd07938 22 KIELIDALSAAGLRRIEVTSFVSPKWVPQMADAEEVLAGLPRRPGVRYSALV-PNLRGAERALAAG-VDEVAVFVSASET 99 (274)
T ss_pred HHHHHHHHHHcCCCEEEeCCCCCcccccccCCHHHHHhhcccCCCCEEEEEC-CCHHHHHHHHHcC-cCEEEEEEecCHH
Q ss_pred --------------chhhhHHHHHHHhCCcEEec
Q 025707 192 --------------DIENEIVPLCRELGIGIVPY 211 (249)
Q Consensus 192 --------------~~~~~~~~~~~~~gi~v~a~ 211 (249)
......+++++++|+.+...
T Consensus 100 ~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~~~ 133 (274)
T cd07938 100 FSQKNINCSIAESLERFEPVAELAKAAGLRVRGY 133 (274)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHCCCeEEEE
No 205
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=42.33 E-value=1.6e+02 Score=22.73 Aligned_cols=109 Identities=19% Similarity=0.142 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHH-HcCCCeEeCCCCcCCCchHHHHHHHHHcCCCCCeEEEecccccccCCcccccCCCHHHHHHHHHHHH
Q 025707 41 EEDGISIIKHAF-SKGITFFDTADKYGPYTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASL 119 (249)
Q Consensus 41 ~~~~~~~l~~A~-~~Gi~~~Dta~~Yg~g~se~~lg~~l~~~~r~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL 119 (249)
.+...+++..|+ +.|+..+.+...= .-|+.+-.++.+ .-+-+.||+--+ .....-..+-+.|
T Consensus 25 Hd~gakvia~~l~d~GfeVi~~g~~~---tp~e~v~aA~~~-dv~vIgvSsl~g-------------~h~~l~~~lve~l 87 (143)
T COG2185 25 HDRGAKVIARALADAGFEVINLGLFQ---TPEEAVRAAVEE-DVDVIGVSSLDG-------------GHLTLVPGLVEAL 87 (143)
T ss_pred cccchHHHHHHHHhCCceEEecCCcC---CHHHHHHHHHhc-CCCEEEEEeccc-------------hHHHHHHHHHHHH
Confidence 466778888888 7799888877555 378999988873 444455555432 2345677788889
Q ss_pred HHcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCCHHHHHHHh
Q 025707 120 RRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAH 174 (249)
Q Consensus 120 ~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~ 174 (249)
+..|.+.|= +++-..-+..+ +.+|++.|--+.++-.+.-.+.+..+.
T Consensus 88 re~G~~~i~-v~~GGvip~~d-------~~~l~~~G~~~if~pgt~~~~~~~~v~ 134 (143)
T COG2185 88 REAGVEDIL-VVVGGVIPPGD-------YQELKEMGVDRIFGPGTPIEEALSDLL 134 (143)
T ss_pred HHhCCcceE-EeecCccCchh-------HHHHHHhCcceeeCCCCCHHHHHHHHH
Confidence 999988754 33333222221 678888998888888655545544443
No 206
>PRK14466 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=42.33 E-value=1e+02 Score=27.52 Aligned_cols=94 Identities=11% Similarity=0.024 Sum_probs=60.2
Q ss_pred EEEeecCCCC-----------CCHHHHHHHHHHHHHcC--C--eeEEEcC--CCCHHHHHHHhh---cCCceEEeeecCc
Q 025707 129 LYYQHRVDTS-----------VPIEETIGEMKKLVEEG--K--IKYIGLS--EASPDTIRRAHA---VHPITAVQLEWSL 188 (249)
Q Consensus 129 l~~lh~~~~~-----------~~~~~~~~~l~~l~~~G--~--ir~iGvs--~~~~~~l~~~~~---~~~~~~~q~~~n~ 188 (249)
.+.||.++++ .++++++++++++.++. + +-|+=+. |-+.+++.++.+ ..+..++-++||+
T Consensus 210 avSLha~~~e~R~~i~P~~~~~~l~~l~~al~~y~~~~~rri~~Ey~Li~gvND~~e~a~~L~~ll~~~~~~VNLIp~Np 289 (345)
T PRK14466 210 AISLHSPFPEQRRELMPAEKAFSIKEIIDLLKNYDFSKQRRVSFEYIVFKGLNDSLKHAKELVKLLRGIDCRVNLIRFHA 289 (345)
T ss_pred EEEcCCCCHHHHHHhcCCccCCCHHHHHHHHHHHHHhhCCEEEEEEEEeCCCCCCHHHHHHHHHHHcCCCceEEEEecCC
Confidence 5788988663 35788999998875442 2 2233332 555555555544 3567788889997
Q ss_pred ccc-----chh---hhHHHHHHHhCCcEEecccC------cccccCCC
Q 025707 189 WAR-----DIE---NEIVPLCRELGIGIVPYCPL------GRGFFGGK 222 (249)
Q Consensus 189 ~~~-----~~~---~~~~~~~~~~gi~v~a~spl------~~G~l~g~ 222 (249)
... ... ....+..+++|+.+...... ++|.|..+
T Consensus 290 ~~~~~~~~~s~~~~~~F~~~L~~~gi~~tvR~s~G~dI~aACGQL~~~ 337 (345)
T PRK14466 290 IPGVDLEGSDMARMEAFRDYLTSHGVFTTIRASRGEDIFAACGMLSTA 337 (345)
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHCCCcEEEeCCCCCchhhcCccchhh
Confidence 533 111 56677788999999988776 44555544
No 207
>PRK05588 histidinol-phosphatase; Provisional
Probab=42.01 E-value=1.4e+02 Score=24.92 Aligned_cols=80 Identities=10% Similarity=0.170 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHcCCCeEeCCCCcCC----C-----chHHHHHHHHHcCCCCCeEEEecccccccCCcccccCCCHHHH
Q 025707 41 EEDGISIIKHAFSKGITFFDTADKYGP----Y-----TNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYV 111 (249)
Q Consensus 41 ~~~~~~~l~~A~~~Gi~~~Dta~~Yg~----g-----~se~~lg~~l~~~~r~~~~I~tK~~~~~~~~~~~~~~~s~~~i 111 (249)
.....+.+++|.+.|+..+ .+.+... . .-+..+ +.++..+..+|.+.--++ ..+. .
T Consensus 15 ~~~~ee~v~~A~~~Gl~~~-~TdH~~~~~~~~~~~~~~~~~y~-~~i~~~~~~~I~~GiE~~------------~~~~-~ 79 (255)
T PRK05588 15 KMKIEEAIKKAKENNLGII-ITEHMDLNLPDKNKFCFDVDSYF-NKYSKYRNNKLLLGIELG------------MEKD-L 79 (255)
T ss_pred ccCHHHHHHHHHHcCCCEE-EeCCCCCCCCCccccccCHHHHH-HHHHHHhcCCcceEEEec------------ccCC-C
Confidence 3457799999999999998 6655311 0 111112 111212223443333332 2222 3
Q ss_pred HHHHHHHHHHcCCCceeEEEeecCC
Q 025707 112 RSCCEASLRRLDVEYIDLYYQHRVD 136 (249)
Q Consensus 112 ~~~~~~sL~~Lg~d~iDl~~lh~~~ 136 (249)
...+++.|++...|++ +..+|..+
T Consensus 80 ~~~~~~~l~~~~~D~v-igSvH~~~ 103 (255)
T PRK05588 80 IEENKELINKYEFDYV-IGSIHLVD 103 (255)
T ss_pred HHHHHHHHhhCCCCeE-EEeEEeeC
Confidence 4556778888888877 78889854
No 208
>TIGR00789 flhB_rel flhB C-terminus-related protein. This model describes a short protein (80-93 residues) homologous to the C-terminus of the flagellar biosynthetic protein FlhB. It is found so far only in species that also have FlhB. In a phylogenetic tree based on alignment of both this family and the homologous region of FlhB and its homologs, the members of this family form a monophyletic set.
Probab=41.62 E-value=8.6 Score=26.63 Aligned_cols=40 Identities=20% Similarity=0.302 Sum_probs=31.8
Q ss_pred hhHHHHHHHhCCcEEecccCcccccCCCCCCCCCCCCcccc
Q 025707 195 NEIVPLCRELGIGIVPYCPLGRGFFGGKAVVESVPLDSFLV 235 (249)
Q Consensus 195 ~~~~~~~~~~gi~v~a~spl~~G~l~g~~~~~~~~~~~~~~ 235 (249)
..+++.++++||+++-..+|+.-+. .-...+.+|++.+..
T Consensus 30 ~~I~~~A~e~~VPi~~~~~LAr~L~-~~~ig~~IP~~ly~a 69 (82)
T TIGR00789 30 ERIIEIAKKHGIPIVEDPDLVDVLL-KLDLDDEIPEELYEV 69 (82)
T ss_pred HHHHHHHHHcCCCEEeCHHHHHHHH-hCCCCCccCHHHHHH
Confidence 7899999999999999999998886 334456667665544
No 209
>cd03324 rTSbeta_L-fuconate_dehydratase Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA. rTS beta expression is associated with the production of small molecules that appear to mediate the down-regulation of thymidylate synthase protein by a novel intercellular signaling mechanism. A member of this family, from Xanthomonas, has been characterized to be a L-fuconate dehydratase. rTS beta belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=41.60 E-value=2.8e+02 Score=25.34 Aligned_cols=152 Identities=11% Similarity=0.092 Sum_probs=88.5
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCCCCcCCCchHHHHHHHHHcCCCCCeEEEecccccccCCcccccCCCHHHHHHHHHHHH
Q 025707 40 SEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASL 119 (249)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~g~se~~lg~~l~~~~r~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL 119 (249)
+.++..+..+.+++.|++.|=.--.-. .......-+++++.-.+++.|.--... .++++...+.+
T Consensus 196 ~~~~~~~~a~~~~~~Gf~~~KiKvg~~-~~~d~~~v~avRe~vG~~~~L~vDaN~----------~w~~~~A~~~~---- 260 (415)
T cd03324 196 SDEKLRRLCKEALAQGFTHFKLKVGAD-LEDDIRRCRLAREVIGPDNKLMIDANQ----------RWDVPEAIEWV---- 260 (415)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCC-HHHHHHHHHHHHHhcCCCCeEEEECCC----------CCCHHHHHHHH----
Confidence 456666777888889999886532111 011122233444422334434332211 24454433333
Q ss_pred HHcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcC----CeeEEEcCCCCHHHHHHHhhcCCceEEeeecCcccc-chh
Q 025707 120 RRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEG----KIKYIGLSEASPDTIRRAHAVHPITAVQLEWSLWAR-DIE 194 (249)
Q Consensus 120 ~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G----~ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~ 194 (249)
++|. ..++.++..|-... -++.+.+|++.. .=-..|=+.++...+.++++...++++|....-.-. ...
T Consensus 261 ~~L~--~~~l~~iEEP~~~~----d~~~~~~L~~~~~~~~iPIa~gEs~~~~~~~~~ll~~~a~dil~~d~~~~GGit~~ 334 (415)
T cd03324 261 KQLA--EFKPWWIEEPTSPD----DILGHAAIRKALAPLPIGVATGEHCQNRVVFKQLLQAGAIDVVQIDSCRLGGVNEN 334 (415)
T ss_pred HHhh--ccCCCEEECCCCCC----cHHHHHHHHHhcccCCCceecCCccCCHHHHHHHHHcCCCCEEEeCccccCCHHHH
Confidence 3332 33556776664433 345556666553 323446567888899999888889999997665432 123
Q ss_pred hhHHHHHHHhCCcEEecc
Q 025707 195 NEIVPLCRELGIGIVPYC 212 (249)
Q Consensus 195 ~~~~~~~~~~gi~v~a~s 212 (249)
.++.+.|+++|+.+...+
T Consensus 335 ~kia~lA~a~gi~~~pH~ 352 (415)
T cd03324 335 LAVLLMAAKFGVPVCPHA 352 (415)
T ss_pred HHHHHHHHHcCCeEEEcC
Confidence 789999999999998774
No 210
>PRK05571 ribose-5-phosphate isomerase B; Provisional
Probab=40.96 E-value=1.7e+02 Score=22.67 Aligned_cols=99 Identities=19% Similarity=0.125 Sum_probs=70.5
Q ss_pred CCHHHHHHHHHHHHHHcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCCe-eEEEcCCCCHHHHHHHhhcCCceEEee
Q 025707 106 GTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKI-KYIGLSEASPDTIRRAHAVHPITAVQL 184 (249)
Q Consensus 106 ~s~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~i-r~iGvs~~~~~~l~~~~~~~~~~~~q~ 184 (249)
+.--.+++.+.+-|+..|.+.+|+-- +..+...+..+....+.+.+.+|.. +.|-+|....-.-..+.+...+.+..+
T Consensus 9 haG~~lK~~l~~~L~~~g~eV~D~G~-~~~~~~~dYpd~a~~va~~V~~g~~~~GIliCGtGiG~siaANK~~GIRAA~~ 87 (148)
T PRK05571 9 HAGFELKEEIIEHLEELGHEVIDLGP-DSYDASVDYPDYAKKVAEAVVAGEADRGILICGTGIGMSIAANKVKGIRAALC 87 (148)
T ss_pred CchHHHHHHHHHHHHHCCCEEEEcCC-CCCCCCCCHHHHHHHHHHHHHcCCCCEEEEEcCCcHHHHHHHhcCCCeEEEEE
Confidence 44567899999999999988888653 3333256788888888999999977 888999988876666666666666555
Q ss_pred ecCccccchhhhHHHHHHHh-CCcEEeccc
Q 025707 185 EWSLWARDIENEIVPLCREL-GIGIVPYCP 213 (249)
Q Consensus 185 ~~n~~~~~~~~~~~~~~~~~-gi~v~a~sp 213 (249)
. +......+++| +..|++.+.
T Consensus 88 ~--------d~~~A~~ar~hNnaNVL~lG~ 109 (148)
T PRK05571 88 H--------DTYSAHLAREHNNANVLALGA 109 (148)
T ss_pred C--------CHHHHHHHHHhcCCcEEEECc
Confidence 2 23345556655 677776543
No 211
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=40.82 E-value=2.6e+02 Score=24.84 Aligned_cols=27 Identities=7% Similarity=0.022 Sum_probs=21.0
Q ss_pred CCHHHHHHHHHHHHHHcCCCceeEEEee
Q 025707 106 GTPEYVRSCCEASLRRLDVEYIDLYYQH 133 (249)
Q Consensus 106 ~s~~~i~~~~~~sL~~Lg~d~iDl~~lh 133 (249)
.+.+.+++.++.. .+++.+++.++.+-
T Consensus 167 qt~e~~~~tl~~~-~~l~p~~is~y~L~ 193 (353)
T PRK05904 167 LKLKDLDEVFNFI-LKHKINHISFYSLE 193 (353)
T ss_pred CCHHHHHHHHHHH-HhcCCCEEEEEeeE
Confidence 5677888888754 56899999998885
No 212
>COG4943 Predicted signal transduction protein containing sensor and EAL domains [Signal transduction mechanisms]
Probab=40.81 E-value=1.9e+02 Score=27.16 Aligned_cols=137 Identities=18% Similarity=0.234 Sum_probs=80.0
Q ss_pred hHHHHHHHHHcCCCCCeEEEecccccccCCcccccCCCHHHHHHHHHHHHHHcCCCceeEEEeecCCC-CCCHHHHHHHH
Q 025707 70 NEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDT-SVPIEETIGEM 148 (249)
Q Consensus 70 se~~lg~~l~~~~r~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~-~~~~~~~~~~l 148 (249)
.-+-+|.+|+ .+.++.|+-.+...+ .....+..-+.+.+++-++. ..-+-+.--+. -.+.......+
T Consensus 340 ~~~dlG~~L~--~~~~l~VsINl~a~D---------l~s~rli~~~~~~l~~~~v~-pqQI~lElTER~f~D~~~~~~iI 407 (524)
T COG4943 340 VFRDLGDLLR--QHRDLHVSINLSASD---------LASPRLIDRLNRKLAQYQVR-PQQIALELTERTFADPKKMTPII 407 (524)
T ss_pred HHHHhHHHHH--hCcceEEEEeeeehh---------hcCchHHHHHHHHHHhcCcC-hHHheeehhhhhhcCchhhhHHH
Confidence 4456777776 566777777665443 33455777788888887763 22223322222 13445677888
Q ss_pred HHHHHcCCeeEE-----EcCCCCHHHHHHHhhcCCceEEee--------ecCccccchhhhHHHHHHHhCCcEEecc---
Q 025707 149 KKLVEEGKIKYI-----GLSEASPDTIRRAHAVHPITAVQL--------EWSLWARDIENEIVPLCRELGIGIVPYC--- 212 (249)
Q Consensus 149 ~~l~~~G~ir~i-----Gvs~~~~~~l~~~~~~~~~~~~q~--------~~n~~~~~~~~~~~~~~~~~gi~v~a~s--- 212 (249)
+++++.|.--+| |-||. .-+..+ ++|..-+ .++....-....+++.|+.+|+.+++=.
T Consensus 408 ~r~ReaG~~IyIDDFGTGYSnL--~YLq~L----~VDaLKIDKsFvdtlg~~~a~~~I~~hII~MAk~L~L~iVaEGVEt 481 (524)
T COG4943 408 LRLREAGHEIYIDDFGTGYSNL--HYLQSL----PVDALKIDKSFVDTLGTDSASHLIAPHIIEMAKSLGLKIVAEGVET 481 (524)
T ss_pred HHHHhcCCeEEEccCcCcchhH--HHHhhC----CccceeccHHHHHhhccCcccchhHHHHHHHHHHcCCcEEeecccH
Confidence 999999985554 33332 222221 2222211 2222222223678899999988888643
Q ss_pred ------------cCcccccCCCCC
Q 025707 213 ------------PLGRGFFGGKAV 224 (249)
Q Consensus 213 ------------pl~~G~l~g~~~ 224 (249)
++++|.|.+|+.
T Consensus 482 eeQ~~~LR~~Gv~~gQGW~fskaL 505 (524)
T COG4943 482 EEQVDWLRKRGVHYGQGWLFSKAL 505 (524)
T ss_pred HHHHHHHHHcCCccccccccCCCC
Confidence 589999999953
No 213
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=40.76 E-value=2.3e+02 Score=24.08 Aligned_cols=98 Identities=18% Similarity=0.210 Sum_probs=55.8
Q ss_pred CCHHHHHHHHHHHHHHcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCC-eeEEEcCCCCHHHHHHHhhcCCceEEee
Q 025707 106 GTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGK-IKYIGLSEASPDTIRRAHAVHPITAVQL 184 (249)
Q Consensus 106 ~s~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~-ir~iGvs~~~~~~l~~~~~~~~~~~~q~ 184 (249)
++.+... .+-+.|.++|+++|.+-. |... .+.++..+.+.+.++ .+-+++...+.+.++.+.+. .++.+-+
T Consensus 19 ~s~~~k~-~i~~~L~~~Gv~~IEvG~---P~~~---~~~~~~~~~l~~~~~~~~v~~~~r~~~~di~~a~~~-g~~~i~i 90 (262)
T cd07948 19 FDTEDKI-EIAKALDAFGVDYIELTS---PAAS---PQSRADCEAIAKLGLKAKILTHIRCHMDDARIAVET-GVDGVDL 90 (262)
T ss_pred CCHHHHH-HHHHHHHHcCCCEEEEEC---CCCC---HHHHHHHHHHHhCCCCCcEEEEecCCHHHHHHHHHc-CcCEEEE
Confidence 4455443 445559999999988874 4332 333444444444333 34456667788888888775 3333333
Q ss_pred ec--Ccc------ccc------hhhhHHHHHHHhCCcEEec
Q 025707 185 EW--SLW------ARD------IENEIVPLCRELGIGIVPY 211 (249)
Q Consensus 185 ~~--n~~------~~~------~~~~~~~~~~~~gi~v~a~ 211 (249)
.+ |.. ... ...+++++++++|+.|...
T Consensus 91 ~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~ 131 (262)
T cd07948 91 VFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFS 131 (262)
T ss_pred EEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 22 211 111 0155678888999876654
No 214
>cd03326 MR_like_1 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 1. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=40.75 E-value=2.7e+02 Score=25.04 Aligned_cols=148 Identities=10% Similarity=-0.003 Sum_probs=85.5
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCCCCcCCCchHHHHHHHHHcCCCCCeEEEecccccccCCcccccCCCHHHHHHHHHHHH
Q 025707 40 SEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASL 119 (249)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~g~se~~lg~~l~~~~r~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL 119 (249)
+.++..+.++.+.+.|++.|=.--...+.......-+++++.-.+++-|..-... .++.+...+ .+
T Consensus 160 ~~~~~~~~a~~~~~~Gf~~~Kikvg~~~~~~di~~v~avRe~~G~~~~l~vDaN~----------~w~~~~A~~----~~ 225 (385)
T cd03326 160 DLGRLRDEMRRYLDRGYTVVKIKIGGAPLDEDLRRIEAALDVLGDGARLAVDANG----------RFDLETAIA----YA 225 (385)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCCCCHHHHHHHHHHHHHhcCCCCeEEEECCC----------CCCHHHHHH----HH
Confidence 4566777778888999999865321111011222333444322223333222211 234443222 33
Q ss_pred HHcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCCee-EEEcCCCCHHHHHHHhhcCCc----eEEeeecCcccc-ch
Q 025707 120 RRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIK-YIGLSEASPDTIRRAHAVHPI----TAVQLEWSLWAR-DI 193 (249)
Q Consensus 120 ~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~----~~~q~~~n~~~~-~~ 193 (249)
+.|. .+++.++..|-... -++.+.+|++...+. ..|=|.++...+.++++.... +++|...+-.-. ..
T Consensus 226 ~~l~--~~~~~~iEeP~~~~----d~~~~~~L~~~~~iPIa~gEs~~~~~~~~~li~~~a~~~~~div~~d~~~~GGit~ 299 (385)
T cd03326 226 KALA--PYGLRWYEEPGDPL----DYALQAELADHYDGPIATGENLFSLQDARNLLRYGGMRPDRDVLQFDPGLSYGLPE 299 (385)
T ss_pred HHhh--CcCCCEEECCCCcc----CHHHHHHHHhhCCCCEEcCCCcCCHHHHHHHHHhCCccccCCEEEeCchhhCCHHH
Confidence 3342 34667777765433 356677777775554 557777899999998887555 889987654332 11
Q ss_pred hhhHHHHHHHhCCc
Q 025707 194 ENEIVPLCRELGIG 207 (249)
Q Consensus 194 ~~~~~~~~~~~gi~ 207 (249)
..++.+.|+.+|+.
T Consensus 300 ~~kia~lA~a~gi~ 313 (385)
T cd03326 300 YLRMLDVLEAHGWS 313 (385)
T ss_pred HHHHHHHHHHcCCC
Confidence 27899999999997
No 215
>PRK05339 PEP synthetase regulatory protein; Provisional
Probab=40.67 E-value=2e+02 Score=24.69 Aligned_cols=75 Identities=19% Similarity=0.225 Sum_probs=50.8
Q ss_pred CHHHHHHHHHHHHHc--CCCeEeCCCCcCCCchHHHHHHHHHcCC-CCCeEEEecccccccCCcccccCCCHHHHHHHHH
Q 025707 40 SEEDGISIIKHAFSK--GITFFDTADKYGPYTNEILLGKALKELP-RENIQVATKFGFVELGFTSVIVKGTPEYVRSCCE 116 (249)
Q Consensus 40 ~~~~~~~~l~~A~~~--Gi~~~Dta~~Yg~g~se~~lg~~l~~~~-r~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~~~ 116 (249)
.-+.+..+.++|+.. |+.+.- ..|..=++++.+-+.+.... .+-+++.|=+ -..+++.+.
T Consensus 14 tGeTAe~v~~A~l~QF~~~~~~~--~~~p~v~~~~~~~~i~~~~~~~~~iV~~Tlv---------------~~elr~~l~ 76 (269)
T PRK05339 14 TGETAETVGRAALSQFPNVEFEE--HRYPFVRTEEKADEVLEEINAERPIVFYTLV---------------DPELREILE 76 (269)
T ss_pred HHHHHHHHHHHHHHhCCCCCeeE--EEeCCcCCHHHHHHHHHHHHhcCCEEEEeCC---------------CHHHHHHHH
Confidence 346777777877754 454321 23333357777777777643 4556666643 356899999
Q ss_pred HHHHHcCCCceeEEE
Q 025707 117 ASLRRLDVEYIDLYY 131 (249)
Q Consensus 117 ~sL~~Lg~d~iDl~~ 131 (249)
+.++.+|+.++|++-
T Consensus 77 ~~~~~~~i~~vdll~ 91 (269)
T PRK05339 77 ERCAEFGIPCIDILG 91 (269)
T ss_pred HHHHHcCCCEEeccH
Confidence 999999999999974
No 216
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=40.26 E-value=1.3e+02 Score=28.53 Aligned_cols=77 Identities=17% Similarity=0.107 Sum_probs=54.1
Q ss_pred CCHHHHHHHHHHHHHcCCeeEEEcCCCCHHHHHHHhhcCCceEEeeecCccccchhhhHHHHHHHhCCcEEecccCc
Q 025707 139 VPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAVHPITAVQLEWSLWARDIENEIVPLCRELGIGIVPYCPLG 215 (249)
Q Consensus 139 ~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~spl~ 215 (249)
.+.+++++.+-+.++..+|+.||+-.+....+..+++..++..+-++=....-...-.-++..-+.|.-+..-.|+.
T Consensus 410 id~~~I~ew~~~~~~~~~i~~v~~D~~g~~~~~~~l~~~g~~lv~i~Q~~~~l~~~~k~~e~~~~~g~i~~~dnp~m 486 (546)
T COG4626 410 IDYAEIVEWFMEIREKFLIKLVGFDPSGAGEFRDALAEAGIKVVGIPQGFKKLSGAIKTIERKLAEGVLVHGDNPLM 486 (546)
T ss_pred cCHHHHHHHHHHHHHhCCccEEeecccchHHHHHHHHhCCCceeeccchhhhhCchhHHHHHHHhcCcEEECCCcHH
Confidence 45678999999999999999999999999999998888666544443222211112445666666677666666653
No 217
>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional
Probab=39.34 E-value=1.7e+02 Score=26.42 Aligned_cols=57 Identities=9% Similarity=0.043 Sum_probs=40.1
Q ss_pred CCCCHHHHHHHhhc-CCceEEeeecCccccchh-hhHHHHHHHhCCcEEecccCccccc
Q 025707 163 SEASPDTIRRAHAV-HPITAVQLEWSLWARDIE-NEIVPLCRELGIGIVPYCPLGRGFF 219 (249)
Q Consensus 163 s~~~~~~l~~~~~~-~~~~~~q~~~n~~~~~~~-~~~~~~~~~~gi~v~a~spl~~G~l 219 (249)
...+++.+++++.. .+..++..+.|+.-.-.. .++.+.|+++|+.++.=..++.|.+
T Consensus 141 d~~d~~~l~~ai~~~tklV~~esp~Nptg~v~dl~~I~~la~~~g~~vivD~a~a~~~~ 199 (403)
T PRK07810 141 DGEDLSQWEEALSVPTQAVFFETPSNPMQSLVDIAAVSELAHAAGAKVVLDNVFATPLL 199 (403)
T ss_pred CCCCHHHHHHhcCcCceEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCCcccc
Confidence 34577788877643 456666778887654333 8899999999999997666665544
No 218
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=39.12 E-value=2.2e+02 Score=23.41 Aligned_cols=53 Identities=17% Similarity=0.201 Sum_probs=36.9
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCCCCcCCCchHHHHHHHHHcCCCCCeEEEeccc
Q 025707 39 LSEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELPRENIQVATKFG 93 (249)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~g~se~~lg~~l~~~~r~~~~I~tK~~ 93 (249)
.+.+++.++.+..++.|++.++...... ...+.+.+.-++.++--+-.-|++.
T Consensus 24 ~~~~~a~~i~~al~~~Gi~~iEitl~~~--~~~~~I~~l~~~~p~~~IGAGTVl~ 76 (212)
T PRK05718 24 NKLEDAVPLAKALVAGGLPVLEVTLRTP--AALEAIRLIAKEVPEALIGAGTVLN 76 (212)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCc--cHHHHHHHHHHHCCCCEEEEeeccC
Confidence 3789999999999999999999885443 4666665544434543344445543
No 219
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=38.89 E-value=2.1e+02 Score=25.60 Aligned_cols=96 Identities=22% Similarity=0.184 Sum_probs=57.1
Q ss_pred CCHHHHHHHHHHHHHHcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCC-eeEEEcCCCCHHHHHHHhhcCCceEEee
Q 025707 106 GTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGK-IKYIGLSEASPDTIRRAHAVHPITAVQL 184 (249)
Q Consensus 106 ~s~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~-ir~iGvs~~~~~~l~~~~~~~~~~~~q~ 184 (249)
++.+.. ..+-+.|.++|+++|++-+ |... ++-++.++.+.+.+. .+-.+++....+.++.+.+. .++.+.+
T Consensus 19 ~s~~~k-~~ia~~L~~~Gv~~IEvG~---p~~~---~~~~e~i~~i~~~~~~~~v~~~~r~~~~di~~a~~~-g~~~i~i 90 (363)
T TIGR02090 19 LTVEQK-VEIARKLDELGVDVIEAGF---PIAS---EGEFEAIKKISQEGLNAEICSLARALKKDIDKAIDC-GVDSIHT 90 (363)
T ss_pred CCHHHH-HHHHHHHHHcCCCEEEEeC---CCCC---hHHHHHHHHHHhcCCCcEEEEEcccCHHHHHHHHHc-CcCEEEE
Confidence 444443 4455669999999999753 2221 233566666665544 55556667778888887765 2344444
Q ss_pred --ecCcccc------c------hhhhHHHHHHHhCCcEE
Q 025707 185 --EWSLWAR------D------IENEIVPLCRELGIGIV 209 (249)
Q Consensus 185 --~~n~~~~------~------~~~~~~~~~~~~gi~v~ 209 (249)
+.|..+. . ...+.+++|+++|..|.
T Consensus 91 ~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~ 129 (363)
T TIGR02090 91 FIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVE 129 (363)
T ss_pred EEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 2222211 1 11568889999998764
No 220
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=38.84 E-value=1.2e+02 Score=24.39 Aligned_cols=66 Identities=15% Similarity=0.168 Sum_probs=41.8
Q ss_pred HHcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCCeeEEEcC-CCCHHHHHHHhhcCCceEEeeecC
Q 025707 120 RRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLS-EASPDTIRRAHAVHPITAVQLEWS 187 (249)
Q Consensus 120 ~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs-~~~~~~l~~~~~~~~~~~~q~~~n 187 (249)
.++|+|++-+..-........ .+....|.++... .+..+||- |.+++.+.++....+++.+|+.-+
T Consensus 16 ~~~Gvd~ig~i~~~~s~R~v~-~~~a~~l~~~~~~-~~~~V~v~vn~~~~~i~~ia~~~~~d~Vqlhg~ 82 (203)
T cd00405 16 AEAGADAIGFIFAPKSPRYVS-PEQAREIVAALPP-FVKRVGVFVNEDLEEILEIAEELGLDVVQLHGD 82 (203)
T ss_pred HHcCCCEEEEecCCCCCCCCC-HHHHHHHHHhCCC-CCcEEEEEeCCCHHHHHHHHHhcCCCEEEECCC
Confidence 368887776654433222222 4444555555443 36678874 777788888887788999999643
No 221
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=38.82 E-value=1e+02 Score=25.23 Aligned_cols=87 Identities=10% Similarity=0.155 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCCeeEEEcCC-CCHHHHHHHhhcCCceEEeeec
Q 025707 108 PEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSE-ASPDTIRRAHAVHPITAVQLEW 186 (249)
Q Consensus 108 ~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~-~~~~~l~~~~~~~~~~~~q~~~ 186 (249)
++...+ +-+.|-+-|+..+.+=+= ..+..+.+++++++.-=-.||..+ .+.++++++++.. - ++-.
T Consensus 15 ~~~a~~-ia~al~~gGi~~iEit~~--------tp~a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aG-A---~Fiv 81 (201)
T PRK06015 15 VEHAVP-LARALAAGGLPAIEITLR--------TPAALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAG-S---RFIV 81 (201)
T ss_pred HHHHHH-HHHHHHHCCCCEEEEeCC--------CccHHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcC-C---CEEE
Confidence 444433 444555667766555431 123445555555443224577765 5778888887752 1 1112
Q ss_pred CccccchhhhHHHHHHHhCCcEEe
Q 025707 187 SLWARDIENEIVPLCRELGIGIVP 210 (249)
Q Consensus 187 n~~~~~~~~~~~~~~~~~gi~v~a 210 (249)
++ ....+++++|+++|+.++.
T Consensus 82 SP---~~~~~vi~~a~~~~i~~iP 102 (201)
T PRK06015 82 SP---GTTQELLAAANDSDVPLLP 102 (201)
T ss_pred CC---CCCHHHHHHHHHcCCCEeC
Confidence 22 2347899999999998773
No 222
>PRK08133 O-succinylhomoserine sulfhydrylase; Validated
Probab=38.81 E-value=1.7e+02 Score=26.19 Aligned_cols=61 Identities=8% Similarity=-0.088 Sum_probs=39.9
Q ss_pred eEEEcCCCCHHHHHHHhhc-CCceEEeeecCccccch-hhhHHHHHHHhCCcEEecccCcccc
Q 025707 158 KYIGLSEASPDTIRRAHAV-HPITAVQLEWSLWARDI-ENEIVPLCRELGIGIVPYCPLGRGF 218 (249)
Q Consensus 158 r~iGvs~~~~~~l~~~~~~-~~~~~~q~~~n~~~~~~-~~~~~~~~~~~gi~v~a~spl~~G~ 218 (249)
+-+-+...+.+.+++++.. .++.++..+.|+.-.-. ..++.+.|+++|+.++.=..++.+.
T Consensus 127 ~v~~vd~~d~~~l~~~i~~~tklV~ie~p~NptG~v~dl~~I~~la~~~gi~livD~t~~~~~ 189 (390)
T PRK08133 127 ETTFVDLTDLDAWRAAVRPNTKLFFLETPSNPLTELADIAALAEIAHAAGALLVVDNCFCTPA 189 (390)
T ss_pred EEEEECCCCHHHHHHhcCcCCeEEEEECCCCCCCCcCCHHHHHHHHHHcCCEEEEECCCcccc
Confidence 3333444467778777643 45556666777654332 2889999999999999766655444
No 223
>cd03313 enolase Enolase: Enolases are homodimeric enzymes that catalyse the reversible dehydration of 2-phospho-D-glycerate to phosphoenolpyruvate as part of the glycolytic and gluconeogenesis pathways. The reaction is facilitated by the presence of metal ions.
Probab=38.74 E-value=3.1e+02 Score=24.99 Aligned_cols=96 Identities=15% Similarity=0.144 Sum_probs=63.0
Q ss_pred CCHHHHHHHHHHHHHHcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcC--CeeEEEcC--CCCHHHHHHHhhcCCceE
Q 025707 106 GTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEG--KIKYIGLS--EASPDTIRRAHAVHPITA 181 (249)
Q Consensus 106 ~s~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G--~ir~iGvs--~~~~~~l~~~~~~~~~~~ 181 (249)
++++...+-+.+.++.+ ++.++..|-...+ |+.+.+|.++- .+.-+|=- .+++..+.++++....++
T Consensus 261 ~t~~eai~~~~~l~e~~-----~i~~iEdPl~~~D----~eg~~~L~~~~g~~ipi~gdE~~~~~~~~~~~~i~~~a~d~ 331 (408)
T cd03313 261 LTSEELIDYYKELVKKY-----PIVSIEDPFDEDD----WEGWAKLTAKLGDKIQIVGDDLFVTNPERLKKGIEKKAANA 331 (408)
T ss_pred cCHHHHHHHHHHHHHhC-----CcEEEEeCCCCcC----HHHHHHHHHhcCCCCeEEcCCcccCCHHHHHHHHHhCCCCE
Confidence 45666655555555554 4678877755444 55556666652 44333322 247899999988888888
Q ss_pred EeeecCccccc-hhhhHHHHHHHhCCcEEe
Q 025707 182 VQLEWSLWARD-IENEIVPLCRELGIGIVP 210 (249)
Q Consensus 182 ~q~~~n~~~~~-~~~~~~~~~~~~gi~v~a 210 (249)
+|+..+-+-.- ...++.+.|+++|+.++.
T Consensus 332 v~ik~~~iGGite~~~ia~lA~~~G~~~~~ 361 (408)
T cd03313 332 LLIKVNQIGTLTETIEAIKLAKKNGYGVVV 361 (408)
T ss_pred EEEcccccCCHHHHHHHHHHHHHcCCeEEc
Confidence 88877654321 127799999999999864
No 224
>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated
Probab=38.68 E-value=2.1e+02 Score=25.63 Aligned_cols=63 Identities=5% Similarity=0.065 Sum_probs=39.6
Q ss_pred eeEEEcCCCCHHHHHHHhhc-CCceEEeeecCccccch-hhhHHHHHHHhCCcEEecccCccccc
Q 025707 157 IKYIGLSEASPDTIRRAHAV-HPITAVQLEWSLWARDI-ENEIVPLCRELGIGIVPYCPLGRGFF 219 (249)
Q Consensus 157 ir~iGvs~~~~~~l~~~~~~-~~~~~~q~~~n~~~~~~-~~~~~~~~~~~gi~v~a~spl~~G~l 219 (249)
+...-+-..+++.+++++.. .+..+++.+-|+.-... ..++.++|+++|+.++.=..++.+.+
T Consensus 114 i~v~~vd~~d~e~l~~ai~~~t~lV~lesP~Nptg~~~di~~I~~la~~~gi~vivD~t~a~~~~ 178 (380)
T PRK06176 114 LSCTIIDTSDLSQIKKAIKPNTKALYLETPSNPLLKITDLAQCASVAKDHGLLTIVDNTFATPYY 178 (380)
T ss_pred eEEEEcCCCCHHHHHHhcCcCceEEEEECCCCCCceecCHHHHHHHHHHcCCEEEEECCcccccc
Confidence 33333333467777776543 34455556666643322 27899999999999997777665543
No 225
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=38.66 E-value=1.2e+02 Score=27.59 Aligned_cols=74 Identities=11% Similarity=0.024 Sum_probs=58.7
Q ss_pred HHHHHHHHHHcCCeeEEEcCCCCHHHHHHHhhcCCceEEeeecCccccchhhhHHHHHHHhCCcEEecccCccc
Q 025707 144 TIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAVHPITAVQLEWSLWARDIENEIVPLCRELGIGIVPYCPLGRG 217 (249)
Q Consensus 144 ~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~spl~~G 217 (249)
.-+.+..|.+.|.--..|+.+-+-...+.+....-..+.+-+|+++.....++..+.+++.++.|.+--||+.+
T Consensus 279 ~~~~~~~L~~~g~~v~~g~l~~~d~d~~~a~~l~~~~~~~~pf~~i~~~~~~~a~~~~~~~~~vi~~~~~~g~~ 352 (402)
T PRK09536 279 AARAVSRLVAAGASVSVGPVPEGDTAAETAARVGCEAVTVPPFKPIEDSTRAEATDLIIAADAVVAAGVAAAAR 352 (402)
T ss_pred HHHHHHHHHHCCCeEEEecCcCcchhHHHHHHcCCCEEeeCCCCCCCHHHHHHHHHHHHhCCEEEECCCccCCC
Confidence 56778889999999999998877666555555444456677899998776688999999999999998888654
No 226
>PRK14455 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=38.46 E-value=2.4e+02 Score=25.20 Aligned_cols=87 Identities=10% Similarity=0.082 Sum_probs=55.7
Q ss_pred EEEeecCCCC-----------CCHHHHHHHHHHHHHcC----CeeEEEcC--CCCHHHHHHHhh---cCCceEEeeecCc
Q 025707 129 LYYQHRVDTS-----------VPIEETIGEMKKLVEEG----KIKYIGLS--EASPDTIRRAHA---VHPITAVQLEWSL 188 (249)
Q Consensus 129 l~~lh~~~~~-----------~~~~~~~~~l~~l~~~G----~ir~iGvs--~~~~~~l~~~~~---~~~~~~~q~~~n~ 188 (249)
.+-+|.+++. .++++++++++++.+++ +|+++=+. |.+.+.++++.+ ..+..++-++||+
T Consensus 222 aiSL~a~~~e~r~~l~pi~~~~~l~~Il~~l~~~~~~~~~~v~iey~lI~gvNDs~ed~~~La~ll~~l~~~VnLIPynp 301 (356)
T PRK14455 222 AISLHAPNNELRSSLMPINRAYPLEKLMEAIEYYIEKTNRRVTFEYILLGGVNDQVEHAEELADLLKGIKCHVNLIPVNP 301 (356)
T ss_pred EeccCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCCcEEEEecCc
Confidence 3667887653 34688999999887643 23455443 444455555443 3455677788888
Q ss_pred cccc-----hh---hhHHHHHHHhCCcEEecccCc
Q 025707 189 WARD-----IE---NEIVPLCRELGIGIVPYCPLG 215 (249)
Q Consensus 189 ~~~~-----~~---~~~~~~~~~~gi~v~a~spl~ 215 (249)
+... .. ..+.+.++++|+.+......+
T Consensus 302 ~~~~ky~~ps~e~l~~f~~~L~~~gi~v~ir~~~g 336 (356)
T PRK14455 302 VPERDYVRTPKEDIFAFEDTLKKNGVNCTIRREHG 336 (356)
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHCCCcEEEeCCCC
Confidence 6531 11 556677889999998877654
No 227
>PF01244 Peptidase_M19: Membrane dipeptidase (Peptidase family M19); InterPro: IPR008257 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of peptidases belong to the MEROPS peptidase family M19 (membrane dipeptidase family, clan MJ). The protein fold of the peptidase domain for members of this family resembles that of Klebsiella urease, the type example for clan MJ. Renal dipeptidase (rDP) (3.4.13.19 from EC), also known as microsomal dipeptidase, is a zinc-dependent metalloenzyme that hydrolyzes a wide range of dipeptides. It is involved in renal metabolism of glutathione and its conjugates. It is a homodimeric disulphide-linked glycoprotein attached to the renal brush border microvilli membrane by a GPI-anchor. A glutamate residue has recently been shown [,] to be important for the catalytic activity of rDP. rDP seems to be evolutionary related to hypothetical proteins in the PQQ biosynthesis operons of Acinetobacter calcoaceticus and Klebsiella pneumoniae.; GO: 0008235 metalloexopeptidase activity, 0008239 dipeptidyl-peptidase activity, 0016805 dipeptidase activity, 0006508 proteolysis; PDB: 3NEH_B 2RAG_D 3LU2_A 3B40_A 3LY0_A 3FDG_B 2I5G_B 3S2J_A 3S2N_A 3S2L_A ....
Probab=38.15 E-value=25 Score=30.84 Aligned_cols=108 Identities=13% Similarity=0.158 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHHcCCCeEeCCCCcCCCchHHHHHHHHHcCCCCCeEEEecccccccCCcccccCCCHHHHHHHHHHHHH
Q 025707 41 EEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLR 120 (249)
Q Consensus 41 ~~~~~~~l~~A~~~Gi~~~Dta~~Yg~g~se~~lg~~l~~~~r~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~ 120 (249)
.+..+++|++..+.|+ .+|.|. .+|+..-.+++ .-+.-+|.|.......-+ .++.-++.. ++..-+
T Consensus 159 T~~G~~vV~~mn~lGm-~vDvSH-----~s~~t~~Dv~~--~s~~PviaSHSn~ral~~---h~RNltDe~---iraia~ 224 (320)
T PF01244_consen 159 TPFGREVVREMNRLGM-LVDVSH-----LSEKTFWDVLE--ISKKPVIASHSNARALCP---HPRNLTDEQ---IRAIAE 224 (320)
T ss_dssp -HHHHHHHHHHHHHT--EEE-TT-----B-HHHHHHHHH--H-SSEEEECCEEBTTTS-----TTSB-HHH---HHHHHH
T ss_pred ChHHHHHHHHHHHcCC-eeeecc-----CCHHHHHHHHh--hcCCCEEEeccChHhhCC---CCCCCCHHH---HHHHHH
Confidence 3678999999999998 999997 58899999998 334577778776543221 122333333 333333
Q ss_pred HcCCCceeEEEeec---CC--CCCCHHHHHHHHHHHHHcCCeeEEEcCC
Q 025707 121 RLDVEYIDLYYQHR---VD--TSVPIEETIGEMKKLVEEGKIKYIGLSE 164 (249)
Q Consensus 121 ~Lg~d~iDl~~lh~---~~--~~~~~~~~~~~l~~l~~~G~ir~iGvs~ 164 (249)
+=| .|-+.+... ++ ....++++++.++.+++.+=+.+||+.+
T Consensus 225 ~GG--viGi~~~~~fl~~~~~~~~~~~~~~~Hi~y~~~l~G~dhVgiGs 271 (320)
T PF01244_consen 225 RGG--VIGINFYPAFLGDDWDPRASLDDLVDHIDYIVDLVGIDHVGIGS 271 (320)
T ss_dssp TT---EEEEESSHHHHSTTHSSG-BHHHHHHHHHHHHHHH-GGGEEEE-
T ss_pred CCc--EEEEEcchhhhcccccccccHHHHHHHHHHHHHhcCCCeEEECc
Confidence 333 333343322 11 3456889999999999887799999964
No 228
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=38.01 E-value=2.9e+02 Score=24.59 Aligned_cols=39 Identities=10% Similarity=0.274 Sum_probs=28.0
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCC-CCcCCCchH-HHHHHHHH
Q 025707 39 LSEEDGISIIKHAFSKGITFFDTA-DKYGPYTNE-ILLGKALK 79 (249)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~Dta-~~Yg~g~se-~~lg~~l~ 79 (249)
.+.++..++++.--+.||..|+.+ +..+ +.| +.+.+..+
T Consensus 20 ~s~~~k~~ia~~L~~~Gv~~IEvG~p~~~--~~~~e~i~~i~~ 60 (365)
T TIGR02660 20 FTAAEKLAIARALDEAGVDELEVGIPAMG--EEERAVIRAIVA 60 (365)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCCCC--HHHHHHHHHHHH
Confidence 578999999999999999999996 3333 444 44444433
No 229
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=37.94 E-value=3.8e+02 Score=26.30 Aligned_cols=101 Identities=13% Similarity=0.137 Sum_probs=67.1
Q ss_pred CCCHHHHHHHHHHHHHcCCCeEeCC--CCcCCCchHHHHHHHHHcCCCCCeEEEe--cccccccCCcc-------cccCC
Q 025707 38 PLSEEDGISIIKHAFSKGITFFDTA--DKYGPYTNEILLGKALKELPRENIQVAT--KFGFVELGFTS-------VIVKG 106 (249)
Q Consensus 38 ~~~~~~~~~~l~~A~~~Gi~~~Dta--~~Yg~g~se~~lg~~l~~~~r~~~~I~t--K~~~~~~~~~~-------~~~~~ 106 (249)
..|+++.++.++...+.|+.-|-.+ ..|-+..+|..+++.+++.- .++-|++ ++++......+ .....
T Consensus 135 ~lD~~~v~~~~~~l~~~gv~siAVs~~~S~~NP~HE~~v~eiire~~-~~i~V~~shev~p~~~~~eR~~TavlnA~L~p 213 (674)
T COG0145 135 PLDEEEVREAAAALKAAGVEAIAVSSLFSYRNPEHELRVAEIIREIG-PDIPVSLSHEVSPEIGEYERANTAVLNAYLSP 213 (674)
T ss_pred cCCHHHHHHHHHHHHhCCCcEEEEEEecccCCcHHHHHHHHHHHHhc-CCceEEechhcchhcCcccchhhheeeeeehH
Confidence 3689999999999999999998765 35555689999999999844 5666666 77763321100 00000
Q ss_pred CHHHHHHHHHHHHHHcCCCceeEEEeecCCCCCC
Q 025707 107 TPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVP 140 (249)
Q Consensus 107 s~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~ 140 (249)
--....++++..|+.-|.+ ..++++.+.....+
T Consensus 214 i~~~yl~~v~~~l~~~g~~-~~l~~m~sdGgl~~ 246 (674)
T COG0145 214 ILRRYLEAVKDALKERGIK-ARLMVMQSDGGLVS 246 (674)
T ss_pred HHHHHHHHHHHHHHhcCCC-ceeEEEecCCcccc
Confidence 1244556677777777764 57777776644433
No 230
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=37.94 E-value=2.5e+02 Score=23.80 Aligned_cols=25 Identities=16% Similarity=0.240 Sum_probs=22.0
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCCC
Q 025707 39 LSEEDGISIIKHAFSKGITFFDTAD 63 (249)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~Dta~ 63 (249)
.+.++..++.+..-++||..|+...
T Consensus 17 f~~~~~~~ia~~L~~~GVd~IEvG~ 41 (266)
T cd07944 17 FGDEFVKAIYRALAAAGIDYVEIGY 41 (266)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEeec
Confidence 4789999999999999999999863
No 231
>PRK00915 2-isopropylmalate synthase; Validated
Probab=37.86 E-value=3.5e+02 Score=25.46 Aligned_cols=25 Identities=20% Similarity=0.296 Sum_probs=21.8
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCCC
Q 025707 39 LSEEDGISIIKHAFSKGITFFDTAD 63 (249)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~Dta~ 63 (249)
.+.++-.++.+...+.||..|+...
T Consensus 23 ~s~e~K~~ia~~L~~~Gv~~IE~G~ 47 (513)
T PRK00915 23 LTVEEKLQIAKQLERLGVDVIEAGF 47 (513)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEcC
Confidence 4788899999999999999999864
No 232
>PRK11359 cyclic-di-GMP phosphodiesterase; Provisional
Probab=37.76 E-value=2.2e+02 Score=27.76 Aligned_cols=81 Identities=16% Similarity=0.283 Sum_probs=54.9
Q ss_pred CHHHHHHHHHHHHHcCCeeEEEcCCCCH--HHHHHHhhcCCceEEeeecCcccc--------chhhhHHHHHHHhCCcEE
Q 025707 140 PIEETIGEMKKLVEEGKIKYIGLSEASP--DTIRRAHAVHPITAVQLEWSLWAR--------DIENEIVPLCRELGIGIV 209 (249)
Q Consensus 140 ~~~~~~~~l~~l~~~G~ir~iGvs~~~~--~~l~~~~~~~~~~~~q~~~n~~~~--------~~~~~~~~~~~~~gi~v~ 209 (249)
....+...+..|++.|- .|++.++.. ..+..+ ...+++++-++-+++.. .....++.+|++.||.|+
T Consensus 676 ~~~~~~~~l~~l~~~G~--~i~ld~fg~~~~~~~~l-~~l~~d~iKid~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vi 752 (799)
T PRK11359 676 HDTEIFKRIQILRDMGV--GLSVDDFGTGFSGLSRL-VSLPVTEIKIDKSFVDRCLTEKRILALLEAITSIGQSLNLTVV 752 (799)
T ss_pred CHHHHHHHHHHHHHCCC--EEEEECCCCchhhHHHH-hhCCCCEEEECHHHHhhcccChhHHHHHHHHHHHHHHCCCeEE
Confidence 35667888999999998 788877644 333333 33456777666544321 122779999999999999
Q ss_pred eccc---------------CcccccCCCC
Q 025707 210 PYCP---------------LGRGFFGGKA 223 (249)
Q Consensus 210 a~sp---------------l~~G~l~g~~ 223 (249)
+-.. +.+|.+.+++
T Consensus 753 a~gVe~~~~~~~l~~~g~~~~QG~~~~~p 781 (799)
T PRK11359 753 AEGVETKEQFEMLRKIHCRVIQGYFFSRP 781 (799)
T ss_pred EEcCCCHHHHHHHHhcCCCEEeeCeecCC
Confidence 8665 5667777764
No 233
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=37.68 E-value=2.7e+02 Score=23.99 Aligned_cols=146 Identities=8% Similarity=0.032 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHcCCCeEeCCCCcCCCchHHHHHHHHHcCCCCCeEEEecccccccCCcccccCCCHHHHHHHHHH-HHH
Q 025707 42 EDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEA-SLR 120 (249)
Q Consensus 42 ~~~~~~l~~A~~~Gi~~~Dta~~Yg~g~se~~lg~~l~~~~r~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~~~~-sL~ 120 (249)
....++-....+.|+|..|.+..-. ...+.+++..-+.... ...+.+.++++++. .-+
T Consensus 12 GIVA~Vt~~La~~g~NI~d~sq~~~--------------~~~~~F~mr~~v~~~~-------~~~~~~~l~~~l~~~~~~ 70 (280)
T TIGR00655 12 GLVAAISTFIAKHGANIISNDQHTD--------------PETGRFFMRVEFQLEG-------FRLEESSLLAAFKSALAE 70 (280)
T ss_pred ChHHHHHHHHHHCCCCEEeeeEEEc--------------CCCCeEEEEEEEEeCC-------CCCCHHHHHHHHHHHHHH
Confidence 3445555666699999999886552 1234444443332211 02467889999999 888
Q ss_pred HcCCCceeEEEeecCCCCCC-------HHHHHHHHHHHHHcCCe--eEEE-cCCCC-HHHHHHHhhcCCceEEeeecCcc
Q 025707 121 RLDVEYIDLYYQHRVDTSVP-------IEETIGEMKKLVEEGKI--KYIG-LSEAS-PDTIRRAHAVHPITAVQLEWSLW 189 (249)
Q Consensus 121 ~Lg~d~iDl~~lh~~~~~~~-------~~~~~~~l~~l~~~G~i--r~iG-vs~~~-~~~l~~~~~~~~~~~~q~~~n~~ 189 (249)
.+|++ +.+|..+.... ...-+++|-...+.|.. .-.+ +||+. ... ..+...+.+.+++.+..
T Consensus 71 ~~~l~----i~l~~~~~~~ki~vl~Sg~g~nl~~l~~~~~~g~l~~~i~~visn~~~~~~---~A~~~gIp~~~~~~~~~ 143 (280)
T TIGR00655 71 KFEMT----WELILADKLKRVAILVSKEDHCLGDLLWRWYSGELDAEIALVISNHEDLRS---LVERFGIPFHYIPATKD 143 (280)
T ss_pred HhCCE----EEEecCCCCcEEEEEEcCCChhHHHHHHHHHcCCCCcEEEEEEEcChhHHH---HHHHhCCCEEEcCCCCc
Confidence 88874 46665544321 13456666666777753 3333 35554 233 23333444444443322
Q ss_pred ccc-hhhhHHHHHHHhCCcEEecccCc
Q 025707 190 ARD-IENEIVPLCRELGIGIVPYCPLG 215 (249)
Q Consensus 190 ~~~-~~~~~~~~~~~~gi~v~a~spl~ 215 (249)
.+. .+..+++.+++.++.++...-++
T Consensus 144 ~~~~~e~~~~~~l~~~~~Dlivlagym 170 (280)
T TIGR00655 144 NRVEHEKRQLELLKQYQVDLVVLAKYM 170 (280)
T ss_pred chhhhHHHHHHHHHHhCCCEEEEeCch
Confidence 322 23678999999988887655544
No 234
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=37.63 E-value=24 Score=36.22 Aligned_cols=73 Identities=15% Similarity=0.286 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHcCCeeEE-E-cCCCC--HHHHHHHhhcCCceEEeeecCccccchh-hhHHHHHHHhCCcEEecccCc
Q 025707 141 IEETIGEMKKLVEEGKIKYI-G-LSEAS--PDTIRRAHAVHPITAVQLEWSLWARDIE-NEIVPLCRELGIGIVPYCPLG 215 (249)
Q Consensus 141 ~~~~~~~l~~l~~~G~ir~i-G-vs~~~--~~~l~~~~~~~~~~~~q~~~n~~~~~~~-~~~~~~~~~~gi~v~a~spl~ 215 (249)
..+++.+|.+++++|+|..| | ++... .+...-++.+ .|.+++|-+.+.... +..+.||++.+++..++-+|.
T Consensus 599 ~~kVl~al~r~kesG~i~Gf~GRLGDLg~Id~kYDvAIsT---ac~~LdyiVVdt~e~aq~cI~fl~~~nLgraTFi~LD 675 (1293)
T KOG0996|consen 599 RNKVLDALMRLKESGRIPGFYGRLGDLGAIDEKYDVAIST---ACARLDYIVVDTIETAQECINFLKKNNLGRATFIILD 675 (1293)
T ss_pred hhHHHHHHHHHHHcCCCCccccccccccccchHHHHHHHH---hccccceEEeccHHHHHHHHHHHHHcCCCceeEEehH
Confidence 35799999999999988765 1 11111 1222233332 466777777765433 889999999999999999987
Q ss_pred c
Q 025707 216 R 216 (249)
Q Consensus 216 ~ 216 (249)
.
T Consensus 676 k 676 (1293)
T KOG0996|consen 676 K 676 (1293)
T ss_pred h
Confidence 4
No 235
>PRK08045 cystathionine gamma-synthase; Provisional
Probab=37.57 E-value=2.3e+02 Score=25.38 Aligned_cols=88 Identities=17% Similarity=0.097 Sum_probs=52.0
Q ss_pred eEEEeecCCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCCHHHHHHHhhc-CCceEEeeecCccccch-hhhHHHHHHHhC
Q 025707 128 DLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAV-HPITAVQLEWSLWARDI-ENEIVPLCRELG 205 (249)
Q Consensus 128 Dl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~-~~~~~~q~~~n~~~~~~-~~~~~~~~~~~g 205 (249)
|-+++..+.. ...+..+..+...+-+...-+...+.+.+++++.. .++.++..+.|+.-.-. ..++.+.|+++|
T Consensus 92 D~Vl~~~~~y----~~~~~~~~~~~~~~gi~v~~vd~~d~e~l~~~l~~~tklV~l~sP~NPtG~v~di~~I~~ia~~~g 167 (386)
T PRK08045 92 DLLVAPHDCY----GGSYRLFDSLAKRGCYRVLFVDQGDEQALRAALAEKPKLVLVESPSNPLLRVVDIAKICHLAREAG 167 (386)
T ss_pred CEEEEcCCCc----HHHHHHHHHHHhhCCeEEEEeCCCCHHHHHHhcccCCeEEEEECCCCCCCEecCHHHHHHHHHHcC
Confidence 5455544322 23344444444444333333445667777776643 44556666666643322 378999999999
Q ss_pred CcEEecccCccccc
Q 025707 206 IGIVPYCPLGRGFF 219 (249)
Q Consensus 206 i~v~a~spl~~G~l 219 (249)
+.++.=..++.+.+
T Consensus 168 ~~vivDeay~~~~~ 181 (386)
T PRK08045 168 AVSVVDNTFLSPAL 181 (386)
T ss_pred CEEEEECCCCcccc
Confidence 99998777766644
No 236
>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]
Probab=37.40 E-value=3.2e+02 Score=24.85 Aligned_cols=63 Identities=17% Similarity=0.144 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHcCCCeEeCCCCcCCCchHHHHHHHHHc--CCCCCeEEEecccccccCCcccccCCCHHHHHHHHHHH
Q 025707 41 EEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKE--LPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEAS 118 (249)
Q Consensus 41 ~~~~~~~l~~A~~~Gi~~~Dta~~Yg~g~se~~lg~~l~~--~~r~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~~~~s 118 (249)
-.+..+---+|+|.|+--+-||..-. .+--++.. ..-|+|+-++++.-.. ...+..+
T Consensus 63 T~~vlE~RiAaLEGG~aa~a~aSG~A------A~~~ai~~la~aGD~iVss~~LYGGT---------------~~lf~~t 121 (426)
T COG2873 63 TTDVLEERIAALEGGVAALAVASGQA------AITYAILNLAGAGDNIVSSSKLYGGT---------------YNLFSHT 121 (426)
T ss_pred hHHHHHHHHHHhhcchhhhhhccchH------HHHHHHHHhccCCCeeEeeccccCch---------------HHHHHHH
Confidence 34444555678999998888776332 33333333 4788999888885321 3457888
Q ss_pred HHHcCC
Q 025707 119 LRRLDV 124 (249)
Q Consensus 119 L~~Lg~ 124 (249)
|++||+
T Consensus 122 l~~~Gi 127 (426)
T COG2873 122 LKRLGI 127 (426)
T ss_pred HHhcCc
Confidence 999997
No 237
>PF01904 DUF72: Protein of unknown function DUF72; InterPro: IPR002763 The function of this family is unknown. Aquifex aeolicus has two copies of this protein. A probable aspartyl-tRNA synthetase from Escherichia coli [] belongs to this group.; PDB: 1VPY_A 1ZTV_A 1VPQ_A.
Probab=37.39 E-value=2.4e+02 Score=23.33 Aligned_cols=130 Identities=13% Similarity=0.089 Sum_probs=70.8
Q ss_pred CCeEeC-CCCcCCCchHHHHHHHHHcCCCCCeEEEecccccccCCcccccCCCHHHHHHHHHHHHHHcCCCceeEEEeec
Q 025707 56 ITFFDT-ADKYGPYTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLDVEYIDLYYQHR 134 (249)
Q Consensus 56 i~~~Dt-a~~Yg~g~se~~lg~~l~~~~r~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~~Lg~d~iDl~~lh~ 134 (249)
++.++. +..|.. ..++++.++.++ -++++.++-|......-.. ......+.+.+.+-+.++.|| +++..+++.-
T Consensus 19 F~~VEvn~TFY~~-P~~~t~~~W~~~-~p~~F~F~vK~~~~iTH~~--~l~~~~~~~~~~F~~~~~~L~-~klg~iL~Q~ 93 (230)
T PF01904_consen 19 FNTVEVNSTFYRI-PSPETVARWREQ-TPEGFRFSVKAPQLITHER--RLRDCAEELWRRFLEALEPLG-EKLGPILFQF 93 (230)
T ss_dssp -SEEEE-HHCCSS-S-HHHHHHHHCT-S-TT-EEEEE--CCCCCCC--HCGSSHHHHHHHHHHHCHHHH-T-EEEEEEE-
T ss_pred CCeEEECcccCCC-CCHHHHHHHHhh-CCCCeEEEEeccHHheecc--cccccHHHHHHHHHHHHHHHh-hcceEEEEEc
Confidence 555554 335653 578899999884 5688999999976542111 011235666466666999999 8999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCCHHHHHHHhhcCCceEEeeecCccccchhhhHHHHHHHhCCcEEecc
Q 025707 135 VDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAVHPITAVQLEWSLWARDIENEIVPLCRELGIGIVPYC 212 (249)
Q Consensus 135 ~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~s 212 (249)
|..-....+.++.|..+.+.-. .....++.+.---+. ..+++++++++|+..+...
T Consensus 94 Ppsf~~~~~~~~~l~~~l~~~~-------------------~~~~~avE~R~~sW~---~~~~~~~l~~~~~~~v~~d 149 (230)
T PF01904_consen 94 PPSFRFTPENLERLDAFLDRLP-------------------RGFRYAVEFRHPSWF---TEEVFELLREHGVALVIAD 149 (230)
T ss_dssp -TT--S-HHHHHHHHHHHHHTT--------------------TS-EEEE--BGGGG---CHHHHHHHHHTT-EEEEEE
T ss_pred CCCcCCCHHHHHHHHHHHhhcc-------------------cccceEEecCCcchh---hHHHHHHHHHcCCEEEEeC
Confidence 8765555666666666655422 011223444322222 2678888898888877543
No 238
>PF00148 Oxidored_nitro: Nitrogenase component 1 type Oxidoreductase; InterPro: IPR000510 Enzymes belonging to this family include cofactor-requiring nitrogenases and protochlorophyllide reductase. The key enzymatic reactions in nitrogen fixation are catalysed by the nitrogenase complex, which has two components, the iron protein (component 2), and a component (component 1) which is either a molybdenum-iron, vanadium-iron or iron-iron protein. The enzyme (1.18.6.1 from EC) forms a hexamer of two alpha, two beta and two delta chains. Protochlorophyllide reductase (1.3.1.33 from EC) is involved in the light-dependent accumulation of chlorophyll, probably at the step of reduction of protochlorophyllide to chlorophyllide.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QH1_C 1QH8_A 1H1L_C 1QGU_A 3AEK_C 3AET_C 3AER_C 3AEU_A 3AES_C 3AEQ_C ....
Probab=37.38 E-value=2.9e+02 Score=24.62 Aligned_cols=132 Identities=14% Similarity=0.076 Sum_probs=70.5
Q ss_pred hHHHHHHHHHc----CCCCCeEEEecccccccCCcccccCCCHHHHHHHHHHHHHHcCCCceeEEEeecCCCCCC----H
Q 025707 70 NEILLGKALKE----LPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVP----I 141 (249)
Q Consensus 70 se~~lg~~l~~----~~r~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~----~ 141 (249)
.|+-|-+++++ ..++=++|.|-....- --+.+..-+++.-++.+. .++.+|.+.-... .
T Consensus 58 ~~~kL~~~i~~~~~~~~P~~i~v~~sC~~~i----------IGdD~~~v~~~~~~~~~~---~vi~v~~~gf~~~~~~G~ 124 (398)
T PF00148_consen 58 GEEKLREAIKEIAEKYKPKAIFVVTSCVPEI----------IGDDIEAVARELQEEYGI---PVIPVHTPGFSGSYSQGY 124 (398)
T ss_dssp SHHHHHHHHHHHHHHHSTSEEEEEE-HHHHH----------TTTTHHHHHHHHHHHHSS---EEEEEE--TTSSSHHHHH
T ss_pred chhhHHHHHHHHHhcCCCcEEEEECCCCHHH----------hCCCHHHHHHHhhcccCC---cEEEEECCCccCCccchH
Confidence 66666677766 3345566665443221 112233334444445554 7788887655322 3
Q ss_pred HHHHHHHHHHH-------HcCCeeEEEcCCCC---HHHHHHHhhcCCceEEeee----------------cCccccchh-
Q 025707 142 EETIGEMKKLV-------EEGKIKYIGLSEAS---PDTIRRAHAVHPITAVQLE----------------WSLWARDIE- 194 (249)
Q Consensus 142 ~~~~~~l~~l~-------~~G~ir~iGvs~~~---~~~l~~~~~~~~~~~~q~~----------------~n~~~~~~~- 194 (249)
+.++.+|-+.. +.+.|--+|.++.. .+.+.++++..++.++.+. +|+......
T Consensus 125 ~~a~~~l~~~~~~~~~~~~~~~VNiiG~~~~~~~d~~el~~lL~~~Gi~v~~~~~~~~t~~e~~~~~~A~lniv~~~~~~ 204 (398)
T PF00148_consen 125 DAALRALAEQLVKPPEEKKPRSVNIIGGSPLGPGDLEELKRLLEELGIEVNAVFPGGTTLEEIRKAPEAALNIVLCPEGG 204 (398)
T ss_dssp HHHHHHHHHHHTTGTTTTSSSEEEEEEESTBTHHHHHHHHHHHHHTTEEEEEEEETTBCHHHHHHGGGSSEEEESSCCHH
T ss_pred HHHHHHHHhhcccccccCCCCceEEecCcCCCcccHHHHHHHHHHCCCceEEEeCCCCCHHHHHhCCcCcEEEEeccchh
Confidence 44555554444 23788899999766 3566777776776555442 333322212
Q ss_pred hhHHHHHHHh-CCcEEe-cccC
Q 025707 195 NEIVPLCREL-GIGIVP-YCPL 214 (249)
Q Consensus 195 ~~~~~~~~~~-gi~v~a-~spl 214 (249)
..+.++.+++ |++.+. -.|+
T Consensus 205 ~~~a~~L~e~~giP~~~~~~p~ 226 (398)
T PF00148_consen 205 PYAAEWLEERFGIPYLYFPSPY 226 (398)
T ss_dssp HHHHHHHHHHHT-EEEEEC-SB
T ss_pred hHHHHHHHHHhCCCeeeccccc
Confidence 3366666665 999998 4444
No 239
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=37.32 E-value=2.7e+02 Score=24.04 Aligned_cols=138 Identities=17% Similarity=0.120 Sum_probs=72.7
Q ss_pred CCCHHHHHHHH-------HHHHHcCCCeEeCCC--C-----------------cCCCchHHH---HHHHH---HcCCCCC
Q 025707 38 PLSEEDGISII-------KHAFSKGITFFDTAD--K-----------------YGPYTNEIL---LGKAL---KELPREN 85 (249)
Q Consensus 38 ~~~~~~~~~~l-------~~A~~~Gi~~~Dta~--~-----------------Yg~g~se~~---lg~~l---~~~~r~~ 85 (249)
.++.++..+++ +.|.++|+..+|--. . || |.-|.. +-+.+ ++.-.++
T Consensus 130 ~mt~~ei~~~i~~~~~aA~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yG-gs~enr~r~~~eii~avr~~~g~d 208 (327)
T cd02803 130 EMTKEEIEQIIEDFAAAARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYG-GSLENRARFLLEIVAAVREAVGPD 208 (327)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccC-CCHHHHHHHHHHHHHHHHHHcCCC
Confidence 35666666555 466788999987532 2 33 222211 22222 2223356
Q ss_pred eEEEecccccccCCcccccCCCHHHHHHHHHHHHHHcCCCceeEEEeecCCCCC----------CHHHHHHHHHHHHHcC
Q 025707 86 IQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSV----------PIEETIGEMKKLVEEG 155 (249)
Q Consensus 86 ~~I~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~----------~~~~~~~~l~~l~~~G 155 (249)
+.|..|+....... ...+.+.. ..+-+.|+.+|+|+|++ +...... .-...++.+..+++.=
T Consensus 209 ~~i~vris~~~~~~----~g~~~~e~-~~la~~l~~~G~d~i~v---s~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~ 280 (327)
T cd02803 209 FPVGVRLSADDFVP----GGLTLEEA-IEIAKALEEAGVDALHV---SGGSYESPPPIIPPPYVPEGYFLELAEKIKKAV 280 (327)
T ss_pred ceEEEEechhccCC----CCCCHHHH-HHHHHHHHHcCCCEEEe---CCCCCcccccccCCCCCCcchhHHHHHHHHHHC
Confidence 78888876532110 11334433 23344566778766554 3322211 0122345556666654
Q ss_pred CeeEEEcCCCC-HHHHHHHhhcCCceEEee
Q 025707 156 KIKYIGLSEAS-PDTIRRAHAVHPITAVQL 184 (249)
Q Consensus 156 ~ir~iGvs~~~-~~~l~~~~~~~~~~~~q~ 184 (249)
.+.-++..+.. ++.++++++....+.+++
T Consensus 281 ~iPVi~~Ggi~t~~~a~~~l~~g~aD~V~i 310 (327)
T cd02803 281 KIPVIAVGGIRDPEVAEEILAEGKADLVAL 310 (327)
T ss_pred CCCEEEeCCCCCHHHHHHHHHCCCCCeeee
Confidence 56666666654 788888887766777766
No 240
>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional
Probab=37.22 E-value=2.5e+02 Score=23.59 Aligned_cols=164 Identities=11% Similarity=0.042 Sum_probs=79.9
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCCCCcCCC-chHHHHHH---HHHc-CCCCCeEEEecccccccCCcccccCCCHHHHHHH
Q 025707 40 SEEDGISIIKHAFSKGITFFDTADKYGPY-TNEILLGK---ALKE-LPRENIQVATKFGFVELGFTSVIVKGTPEYVRSC 114 (249)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~g-~se~~lg~---~l~~-~~r~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~ 114 (249)
+.++..+.++.+.+.|+.+++-=-.|=.. .....+.. .++. ...-.++++-+.-... +. ...+.+.-.+-
T Consensus 26 ~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~~~~~~~~l~~~~~~~PiI~T~R~~~eG---G~--~~~~~~~~~~l 100 (253)
T PRK02412 26 TLEEVLAEALAISKYDADIIEWRADFLEKISDVESVLAAAPAIREKFAGKPLLFTFRTAKEG---GE--IALSDEEYLAL 100 (253)
T ss_pred CHHHHHHHHHHHhhcCCCEEEEEechhhccCCHHHHHHHHHHHHHhcCCCcEEEEECChhhC---CC--CCCCHHHHHHH
Confidence 57777777788888898888655444311 12233332 2322 2223455554432211 11 12233333333
Q ss_pred HHHHHHHcC-CCceeEEEeecCCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCC----H--HHHHHHhhc---CCceEEee
Q 025707 115 CEASLRRLD-VEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEAS----P--DTIRRAHAV---HPITAVQL 184 (249)
Q Consensus 115 ~~~sL~~Lg-~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~----~--~~l~~~~~~---~~~~~~q~ 184 (249)
+ +.+-++| .||+|+=+-. ..+.+..+.+..+++.++-|+ |-|+ + +.+...+.. .+.+++=+
T Consensus 101 l-~~~~~~~~~d~vDiEl~~-------~~~~~~~l~~~~~~~~~kvI~-S~H~f~~tP~~~~l~~~~~~~~~~gaDivKi 171 (253)
T PRK02412 101 I-KAVIKSGLPDYIDVELFS-------GKDVVKEMVAFAHEHGVKVVL-SYHDFEKTPPKEEIVERLRKMESLGADIVKI 171 (253)
T ss_pred H-HHHHhcCCCCEEEEeccC-------ChHHHHHHHHHHHHcCCEEEE-eeCCCCCCcCHHHHHHHHHHHHHhCCCEEEE
Confidence 4 3445778 8999984321 123455555554566677676 6653 2 333332222 34455555
Q ss_pred ecCccccchhhhHHHHHHH-----hCCcEEecccCccc
Q 025707 185 EWSLWARDIENEIVPLCRE-----LGIGIVPYCPLGRG 217 (249)
Q Consensus 185 ~~n~~~~~~~~~~~~~~~~-----~gi~v~a~spl~~G 217 (249)
-+..-+......++.+.++ .++++++++.=..|
T Consensus 172 a~~a~~~~D~~~ll~~~~~~~~~~~~~P~i~~~MG~~G 209 (253)
T PRK02412 172 AVMPQSEQDVLTLLNATREMKELYADQPLITMSMGKLG 209 (253)
T ss_pred EecCCCHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCc
Confidence 4444333322455555543 46777765533334
No 241
>COG1831 Predicted metal-dependent hydrolase (urease superfamily) [General function prediction only]
Probab=37.09 E-value=2.7e+02 Score=23.95 Aligned_cols=65 Identities=29% Similarity=0.366 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHcCCeeEEEcCCCC-----H-------HHHHHHhhc-CCce-EEeeecCccccchhhhHHHHHHHhCC
Q 025707 142 EETIGEMKKLVEEGKIKYIGLSEAS-----P-------DTIRRAHAV-HPIT-AVQLEWSLWARDIENEIVPLCRELGI 206 (249)
Q Consensus 142 ~~~~~~l~~l~~~G~ir~iGvs~~~-----~-------~~l~~~~~~-~~~~-~~q~~~n~~~~~~~~~~~~~~~~~gi 206 (249)
...++..++|+++|++-.||=+... . +.+..+++. ..++ .+|+..--.....-..+-+.+++.|+
T Consensus 107 ~~~lelA~k~v~eg~avaiGEvGrPHypVs~~v~~~~n~vl~~a~elA~dvdc~vqLHtes~~~~~~~~i~~~ak~~G~ 185 (285)
T COG1831 107 RHALELAAKLVEEGKAVAIGEVGRPHYPVSEEVWEASNEVLEYAMELAKDVDCAVQLHTESLDEETYEEIAEMAKEAGI 185 (285)
T ss_pred HHHHHHHHHHHhccceeeeeccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCcEEEecCCCChHHHHHHHHHHHHhCC
Confidence 3568888899999998888766531 1 223333333 1232 35654333333223778888888887
No 242
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=37.08 E-value=2.2e+02 Score=22.83 Aligned_cols=102 Identities=16% Similarity=0.173 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHcCCCceeEEE-eecCCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCCH--HHHHHHhhcCCceEEeee
Q 025707 109 EYVRSCCEASLRRLDVEYIDLYY-QHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASP--DTIRRAHAVHPITAVQLE 185 (249)
Q Consensus 109 ~~i~~~~~~sL~~Lg~d~iDl~~-lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~--~~l~~~~~~~~~~~~q~~ 185 (249)
+.....+...++..+...-.+++ +...........+.+.++.+++.|. .+++.++.. ..+.. +...+++++=++
T Consensus 98 ~~~~~~~~~~l~~~~~~~~~l~iei~e~~~~~~~~~~~~~~~~l~~~G~--~l~ld~~g~~~~~~~~-l~~~~~d~iKld 174 (240)
T cd01948 98 PDFLDRLLELLAETGLPPRRLVLEITESALIDDLEEALATLRRLRALGV--RIALDDFGTGYSSLSY-LKRLPVDYLKID 174 (240)
T ss_pred cHHHHHHHHHHHHcCCCHHHEEEEEecchhhCCHHHHHHHHHHHHHCCC--eEEEeCCCCcHhhHHH-HHhCCCCEEEEC
Confidence 34557778888888876422222 2222223445568899999999998 677776543 23333 333456776666
Q ss_pred cCcccc--------chhhhHHHHHHHhCCcEEeccc
Q 025707 186 WSLWAR--------DIENEIVPLCRELGIGIVPYCP 213 (249)
Q Consensus 186 ~n~~~~--------~~~~~~~~~~~~~gi~v~a~sp 213 (249)
.+.+.. ..-..++..|+..|+.|++-..
T Consensus 175 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~via~gV 210 (240)
T cd01948 175 RSFVRDIETDPEDRAIVRAIIALAHSLGLKVVAEGV 210 (240)
T ss_pred HHHHHhHhcChhhHHHHHHHHHHHHHCCCeEEEEec
Confidence 554332 1126788999999999997654
No 243
>PLN02389 biotin synthase
Probab=37.04 E-value=3.2e+02 Score=24.68 Aligned_cols=101 Identities=19% Similarity=0.181 Sum_probs=57.7
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCCCC-cCC-C--chHHHHHHHHHcCCCCCeEEEecccccccCCcccccCCCHHHHHHH
Q 025707 39 LSEEDGISIIKHAFSKGITFFDTADK-YGP-Y--TNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSC 114 (249)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~Dta~~-Yg~-g--~se~~lg~~l~~~~r~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~ 114 (249)
.+.++..+.++.+.+.|++.|-.... .+. + ..-+.+-+.++.+....+-|....+. .+.+
T Consensus 116 Ls~EeIl~~a~~~~~~G~~~~~ivts~rg~~~e~~~~e~i~eiir~ik~~~l~i~~s~G~-----------l~~E----- 179 (379)
T PLN02389 116 MSKDDVLEAAKRAKEAGSTRFCMGAAWRDTVGRKTNFNQILEYVKEIRGMGMEVCCTLGM-----------LEKE----- 179 (379)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEecccCCCCChhHHHHHHHHHHHHhcCCcEEEECCCC-----------CCHH-----
Confidence 58899999999999999998843211 111 1 11235555555543333445433332 1222
Q ss_pred HHHHHHHcCCCceeEEEeec-C------CCCCCHHHHHHHHHHHHHcCC
Q 025707 115 CEASLRRLDVEYIDLYYQHR-V------DTSVPIEETIGEMKKLVEEGK 156 (249)
Q Consensus 115 ~~~sL~~Lg~d~iDl~~lh~-~------~~~~~~~~~~~~l~~l~~~G~ 156 (249)
.-+.|+.-|+|++-.-+ .. + -.....++.++.++.+++.|.
T Consensus 180 ~l~~LkeAGld~~~~~L-eTs~~~y~~i~~~~s~e~rl~ti~~a~~~Gi 227 (379)
T PLN02389 180 QAAQLKEAGLTAYNHNL-DTSREYYPNVITTRSYDDRLETLEAVREAGI 227 (379)
T ss_pred HHHHHHHcCCCEEEeee-cCChHHhCCcCCCCCHHHHHHHHHHHHHcCC
Confidence 22345566887654422 21 1 112457889999999999985
No 244
>KOG0173 consensus 20S proteasome, regulatory subunit beta type PSMB7/PSMB10/PUP1 [Posttranslational modification, protein turnover, chaperones]
Probab=36.94 E-value=30 Score=29.11 Aligned_cols=23 Identities=26% Similarity=0.554 Sum_probs=21.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCC
Q 025707 34 CYNSPLSEEDGISIIKHAFSKGI 56 (249)
Q Consensus 34 ~~~~~~~~~~~~~~l~~A~~~Gi 56 (249)
.|...+++|++.+++..|+++||
T Consensus 178 r~k~dlt~eea~~Lv~eAi~AGi 200 (271)
T KOG0173|consen 178 RWKPDLTKEEAIKLVCEAIAAGI 200 (271)
T ss_pred hcCcccCHHHHHHHHHHHHHhhh
Confidence 58778899999999999999998
No 245
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=36.93 E-value=1.9e+02 Score=23.79 Aligned_cols=130 Identities=21% Similarity=0.138 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHcCCCeEeCCCCcCCCchHHHHHHHHHcCCCCCeEEEecccccccCCcccccCCCHHHH-----HHHHH
Q 025707 42 EDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYV-----RSCCE 116 (249)
Q Consensus 42 ~~~~~~l~~A~~~Gi~~~Dta~~Yg~g~se~~lg~~l~~~~r~~~~I~tK~~~~~~~~~~~~~~~s~~~i-----~~~~~ 116 (249)
++.++.++.|.+.|++-+=+.+.|. ....+.+.. .+..+-+.-++.... ...+.- ..+++
T Consensus 19 ~~~~~~~~~a~~~~~~av~v~p~~~-----~~~~~~~~~-~~~~~~~vi~fp~g~---------~~~~~k~~~~~~~~ve 83 (236)
T PF01791_consen 19 EDIKKLCREAIEYGFDAVCVTPGYV-----KPAAELLAG-SGVKVGLVIGFPFGT---------STTEPKGYDQIVAEVE 83 (236)
T ss_dssp HHHHHHHHHHHHHTSSEEEEEGGGH-----HHHHHHSTT-STSEEEEEESTTTSS---------STHHHHTCEEEHHHHH
T ss_pred hhHHHHHHHHHHhCCCEEEECHHHH-----HHHHHHhhc-cccccceEEEeCCCC---------CccccccccchHHHHH
Confidence 3889999999999999998888885 223333331 122444444433221 112222 45566
Q ss_pred HHHHHcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHc---CCeeEEEcCCCCHHH---------HHHHhhc---CCceE
Q 025707 117 ASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEE---GKIKYIGLSEASPDT---------IRRAHAV---HPITA 181 (249)
Q Consensus 117 ~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~---G~ir~iGvs~~~~~~---------l~~~~~~---~~~~~ 181 (249)
+. .++|.|-+|+++...+..+...+...+.+.+++++ --+..|--+...... +..+... .+.++
T Consensus 84 ~A-~~~GAd~vd~vi~~~~~~~~~~~~~~~~i~~v~~~~~~~gl~vIlE~~l~~~~~~~~~~~~~I~~a~ria~e~GaD~ 162 (236)
T PF01791_consen 84 EA-IRLGADEVDVVINYGALGSGNEDEVIEEIAAVVEECHKYGLKVILEPYLRGEEVADEKKPDLIARAARIAAELGADF 162 (236)
T ss_dssp HH-HHTT-SEEEEEEEHHHHHTTHHHHHHHHHHHHHHHHHTSEEEEEEEECECHHHBSSTTHHHHHHHHHHHHHHTT-SE
T ss_pred HH-HHcCCceeeeeccccccccccHHHHHHHHHHHHHHHhcCCcEEEEEEecCchhhcccccHHHHHHHHHHHHHhCCCE
Confidence 65 47999999999998554444455555555555543 334444443333333 4444433 67788
Q ss_pred EeeecC
Q 025707 182 VQLEWS 187 (249)
Q Consensus 182 ~q~~~n 187 (249)
+-..+.
T Consensus 163 vKt~tg 168 (236)
T PF01791_consen 163 VKTSTG 168 (236)
T ss_dssp EEEE-S
T ss_pred EEecCC
Confidence 888766
No 246
>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis. This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.
Probab=36.84 E-value=2e+02 Score=25.47 Aligned_cols=55 Identities=15% Similarity=0.153 Sum_probs=37.5
Q ss_pred CCHHHHHHHhhc-CCceEEeeecCccccch-hhhHHHHHHHhCCcEEecccCccccc
Q 025707 165 ASPDTIRRAHAV-HPITAVQLEWSLWARDI-ENEIVPLCRELGIGIVPYCPLGRGFF 219 (249)
Q Consensus 165 ~~~~~l~~~~~~-~~~~~~q~~~n~~~~~~-~~~~~~~~~~~gi~v~a~spl~~G~l 219 (249)
.+++.+++++.. .+..++..+.|+.-.-. ..++.+.|+++|+.++.=..++.|.+
T Consensus 113 ~d~~~l~~~i~~~~~~v~~e~~~np~g~~~dl~~i~~la~~~g~~livD~t~~~~~~ 169 (369)
T cd00614 113 DDPEALEAAIKPETKLVYVESPTNPTLKVVDIEAIAELAHEHGALLVVDNTFATPYL 169 (369)
T ss_pred CCHHHHHHhcCCCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCcchhc
Confidence 346677766643 44555566666643322 27899999999999998888777665
No 247
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=36.78 E-value=2.7e+02 Score=24.08 Aligned_cols=99 Identities=11% Similarity=0.163 Sum_probs=61.1
Q ss_pred CHHHHHHHHHHHHHHcCCCceeEEEeec-CCCC-C----CHHHHHHHHHHHHHcCCeeEEEcCCCCHHHHHHHhhcCCce
Q 025707 107 TPEYVRSCCEASLRRLDVEYIDLYYQHR-VDTS-V----PIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAVHPIT 180 (249)
Q Consensus 107 s~~~i~~~~~~sL~~Lg~d~iDl~~lh~-~~~~-~----~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~ 180 (249)
+++.+.+..++.+ .-|.|-||+----. |... . .++.+...++.+++.-.+ -|.+-+++++.++++++.. .+
T Consensus 36 ~~~~a~~~a~~~~-~~GAdIIDIGgeSTrPg~~~v~~eeE~~Rv~pvI~~l~~~~~~-~ISIDT~~~~va~~AL~~G-ad 112 (282)
T PRK11613 36 SLIDAVKHANLMI-NAGATIIDVGGESTRPGAAEVSVEEELDRVIPVVEAIAQRFEV-WISVDTSKPEVIRESAKAG-AH 112 (282)
T ss_pred CHHHHHHHHHHHH-HCCCcEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCC-eEEEECCCHHHHHHHHHcC-CC
Confidence 4555555555443 45788888875432 3321 1 233356667777754222 4889999999999999873 33
Q ss_pred EEeeecCccccchhhhHHHHHHHhCCcEEecc
Q 025707 181 AVQLEWSLWARDIENEIVPLCRELGIGIVPYC 212 (249)
Q Consensus 181 ~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~s 212 (249)
++ ++.+-+. ..+.++.|++.|.+++.+.
T Consensus 113 iI-NDI~g~~---d~~~~~~~a~~~~~vVlmh 140 (282)
T PRK11613 113 II-NDIRSLS---EPGALEAAAETGLPVCLMH 140 (282)
T ss_pred EE-EECCCCC---CHHHHHHHHHcCCCEEEEc
Confidence 32 1111121 2467888999999999874
No 248
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=36.74 E-value=1.8e+02 Score=23.57 Aligned_cols=85 Identities=9% Similarity=0.057 Sum_probs=50.3
Q ss_pred ceeEEEeecCCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCCHHHHHHHhhcCCceEEeeecC-ccccchhhhHHHHHHHh
Q 025707 126 YIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAVHPITAVQLEWS-LWARDIENEIVPLCREL 204 (249)
Q Consensus 126 ~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~n-~~~~~~~~~~~~~~~~~ 204 (249)
-..+..+.+.. .-....+|.+.|- ..+-..-.+.+.+.++..-....++.+... .-.......+++.|++.
T Consensus 22 ~~~V~~l~R~~-------~~~~~~~l~~~g~-~vv~~d~~~~~~l~~al~g~d~v~~~~~~~~~~~~~~~~~li~Aa~~a 93 (233)
T PF05368_consen 22 GFSVRALVRDP-------SSDRAQQLQALGA-EVVEADYDDPESLVAALKGVDAVFSVTPPSHPSELEQQKNLIDAAKAA 93 (233)
T ss_dssp TGCEEEEESSS-------HHHHHHHHHHTTT-EEEES-TT-HHHHHHHHTTCSEEEEESSCSCCCHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEecc-------chhhhhhhhcccc-eEeecccCCHHHHHHHHcCCceEEeecCcchhhhhhhhhhHHHhhhcc
Confidence 34566666653 1122455666676 456666667788888777433333333322 11122237899999999
Q ss_pred CCcEEecccCcccc
Q 025707 205 GIGIVPYCPLGRGF 218 (249)
Q Consensus 205 gi~v~a~spl~~G~ 218 (249)
||..+.+|.++...
T Consensus 94 gVk~~v~ss~~~~~ 107 (233)
T PF05368_consen 94 GVKHFVPSSFGADY 107 (233)
T ss_dssp T-SEEEESEESSGT
T ss_pred ccceEEEEEecccc
Confidence 99999999887665
No 249
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=36.65 E-value=2.8e+02 Score=23.89 Aligned_cols=69 Identities=17% Similarity=0.132 Sum_probs=50.1
Q ss_pred CCHHHHHHHHHHHHHHcCC--------------------------CceeEEEeecCCCCC---CHHHHHHHHHHHHHcCC
Q 025707 106 GTPEYVRSCCEASLRRLDV--------------------------EYIDLYYQHRVDTSV---PIEETIGEMKKLVEEGK 156 (249)
Q Consensus 106 ~s~~~i~~~~~~sL~~Lg~--------------------------d~iDl~~lh~~~~~~---~~~~~~~~l~~l~~~G~ 156 (249)
.....+...++.-|+|+++ ...|++.+.-|-... ..+-.-++..+++++|.
T Consensus 102 m~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~Ga 181 (300)
T COG4152 102 MPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGA 181 (300)
T ss_pred CcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHhcCC
Confidence 4466777788888888763 345666666654432 23445667889999998
Q ss_pred eeEEEcCCCCHHHHHHHhhc
Q 025707 157 IKYIGLSEASPDTIRRAHAV 176 (249)
Q Consensus 157 ir~iGvs~~~~~~l~~~~~~ 176 (249)
.|=+|+|..++++++.+.
T Consensus 182 --tIifSsH~Me~vEeLCD~ 199 (300)
T COG4152 182 --TIIFSSHRMEHVEELCDR 199 (300)
T ss_pred --EEEEecchHHHHHHHhhh
Confidence 899999999999999875
No 250
>PRK05939 hypothetical protein; Provisional
Probab=36.64 E-value=2e+02 Score=25.91 Aligned_cols=55 Identities=16% Similarity=0.129 Sum_probs=37.3
Q ss_pred CCHHHHHHHhhc-CCceEEeeecCccccchh-hhHHHHHHHhCCcEEecccCccccc
Q 025707 165 ASPDTIRRAHAV-HPITAVQLEWSLWARDIE-NEIVPLCRELGIGIVPYCPLGRGFF 219 (249)
Q Consensus 165 ~~~~~l~~~~~~-~~~~~~q~~~n~~~~~~~-~~~~~~~~~~gi~v~a~spl~~G~l 219 (249)
.+.+.+++++.. .+..++..+.|+.-.-.+ .++.+.|+++|+.++.=..++.|..
T Consensus 119 ~d~e~l~~~l~~~tklV~vesp~NptG~v~dl~~I~~la~~~gi~livD~t~a~~~~ 175 (397)
T PRK05939 119 TDVQNVAAAIRPNTRMVFVETIANPGTQVADLAGIGALCRERGLLYVVDNTMTSPWL 175 (397)
T ss_pred CCHHHHHHhCCCCCeEEEEECCCCCCCCHHhHHHHHHHHHHcCCEEEEECCcccccc
Confidence 467778777643 445556666666443323 7899999999999987776655543
No 251
>TIGR01927 menC_gamma/gm+ o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are gamma proteobacteria and archaea. Many of the com-names of the proteins identified by the model are identified as O-succinylbenzoyl-CoA synthase in error.
Probab=36.46 E-value=2.8e+02 Score=23.98 Aligned_cols=86 Identities=9% Similarity=-0.010 Sum_probs=58.9
Q ss_pred eeEEEeecCCCCCCHHHHHHHHHHHHHcC-CeeEEEcCCCCHHHHHHHhhcCCceEEeeecCcccc-chhhhHHHHHHHh
Q 025707 127 IDLYYQHRVDTSVPIEETIGEMKKLVEEG-KIKYIGLSEASPDTIRRAHAVHPITAVQLEWSLWAR-DIENEIVPLCREL 204 (249)
Q Consensus 127 iDl~~lh~~~~~~~~~~~~~~l~~l~~~G-~ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~~~~~~~~~ 204 (249)
.++.++..|-... +.+.++.++- .=-..|=|.++...+.+++....++++|+.....-. ....++.+.|+++
T Consensus 183 ~~i~~iEqP~~~~------~~~~~l~~~~~~Pia~dEs~~~~~d~~~~~~~~~~d~i~ik~~~~GGi~~~~~i~~~a~~~ 256 (307)
T TIGR01927 183 GRIAFLEEPLPDA------DEMSAFSEATGTAIALDESLWELPQLADEYGPGWRGALVIKPAIIGSPAKLRDLAQKAHRL 256 (307)
T ss_pred CCceEEeCCCCCH------HHHHHHHHhCCCCEEeCCCcCChHHHHHHHhcCCCceEEECchhcCCHHHHHHHHHHHHHc
Confidence 4667776664321 4555665553 223556677888888888887778888887665432 1127899999999
Q ss_pred CCcEEecccCcccc
Q 025707 205 GIGIVPYCPLGRGF 218 (249)
Q Consensus 205 gi~v~a~spl~~G~ 218 (249)
|+.++..+.+..|+
T Consensus 257 gi~~~~~~~~es~i 270 (307)
T TIGR01927 257 GLQAVFSSVFESSI 270 (307)
T ss_pred CCCEEEECccchHH
Confidence 99999887776664
No 252
>PRK07671 cystathionine beta-lyase; Provisional
Probab=36.24 E-value=2.3e+02 Score=25.35 Aligned_cols=56 Identities=9% Similarity=0.066 Sum_probs=37.4
Q ss_pred CCCHHHHHHHhhc-CCceEEeeecCccccch-hhhHHHHHHHhCCcEEecccCccccc
Q 025707 164 EASPDTIRRAHAV-HPITAVQLEWSLWARDI-ENEIVPLCRELGIGIVPYCPLGRGFF 219 (249)
Q Consensus 164 ~~~~~~l~~~~~~-~~~~~~q~~~n~~~~~~-~~~~~~~~~~~gi~v~a~spl~~G~l 219 (249)
..+++.+++++.. .++.++..+.|+.-... ..++.+.|+++|+.++.=..++.+.+
T Consensus 121 ~~d~~~l~~ai~~~tklV~le~P~NPtg~~~dl~~I~~la~~~g~~lvvD~a~~~~~~ 178 (377)
T PRK07671 121 TSNLEEVEEAIRPNTKAIYVETPTNPLLKITDIKKISTIAKEKGLLTIVDNTFMTPYW 178 (377)
T ss_pred CCCHHHHHHhcCCCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCCCcccc
Confidence 3467777776643 45556666777653322 27899999999999987766654443
No 253
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=36.19 E-value=40 Score=32.99 Aligned_cols=82 Identities=15% Similarity=0.035 Sum_probs=53.2
Q ss_pred HHHHHHHcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCCHHHHHHHhhcCCceEEeeecCccccchh
Q 025707 115 CEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAVHPITAVQLEWSLWARDIE 194 (249)
Q Consensus 115 ~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~ 194 (249)
.=.-|+.||+.+|.|+=+|.......+ .+.|+.-+||-...+-=.++.... -.+. +..+-.+
T Consensus 205 ~i~yLk~LGvtaVeLLPV~~~~~~~~l----------~~~gl~n~WGYdP~~fFAp~~~Ys-------s~p~-p~~~i~E 266 (697)
T COG1523 205 IIDYLKDLGVTAVELLPVFDFYDEPHL----------DKSGLNNNWGYDPLNFFAPEGRYA-------SNPE-PATRIKE 266 (697)
T ss_pred HHHHHHHhCCceEEEecceEEeccccc----------cccccccccCCCcccccCCCcccc-------CCCC-cchHHHH
Confidence 356789999999999999877654432 288898899987654222111111 1111 2223223
Q ss_pred -hhHHHHHHHhCCcEEecccC
Q 025707 195 -NEIVPLCRELGIGIVPYCPL 214 (249)
Q Consensus 195 -~~~~~~~~~~gi~v~a~spl 214 (249)
..+++.+.+.||.||-=-+|
T Consensus 267 fK~mV~~lHkaGI~VILDVVf 287 (697)
T COG1523 267 FKDMVKALHKAGIEVILDVVF 287 (697)
T ss_pred HHHHHHHHHHcCCEEEEEEec
Confidence 88999999999999954443
No 254
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=36.14 E-value=1.4e+02 Score=20.44 Aligned_cols=64 Identities=13% Similarity=0.054 Sum_probs=36.6
Q ss_pred HcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCCeeEEEcCCC-CHHHHHHHhhcCCceEEeeec
Q 025707 121 RLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEA-SPDTIRRAHAVHPITAVQLEW 186 (249)
Q Consensus 121 ~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~-~~~~l~~~~~~~~~~~~q~~~ 186 (249)
.+.....|++++....+.....++++.+.+.. ..++-|.+++. +.....++.+..-.+++.-++
T Consensus 38 ~~~~~~~d~iiid~~~~~~~~~~~~~~i~~~~--~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~kp~ 102 (112)
T PF00072_consen 38 LLKKHPPDLIIIDLELPDGDGLELLEQIRQIN--PSIPIIVVTDEDDSDEVQEALRAGADDYLSKPF 102 (112)
T ss_dssp HHHHSTESEEEEESSSSSSBHHHHHHHHHHHT--TTSEEEEEESSTSHHHHHHHHHTTESEEEESSS
T ss_pred HhcccCceEEEEEeeecccccccccccccccc--ccccEEEecCCCCHHHHHHHHHCCCCEEEECCC
Confidence 33334599999986655555555555554433 36777777754 445666666554333444443
No 255
>cd01320 ADA Adenosine deaminase (ADA) is a monomeric zinc dependent enzyme which catalyzes the irreversible hydrolytic deamination of both adenosine, as well as desoxyadenosine, to ammonia and inosine or desoxyinosine, respectively. ADA plays an important role in the purine pathway. Low, as well as high levels of ADA activity have been linked to several diseases.
Probab=36.11 E-value=2.8e+02 Score=23.88 Aligned_cols=98 Identities=17% Similarity=0.160 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCCeeEEEcCCC-CHHHHHHHhhcCCceEEeeec
Q 025707 108 PEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEA-SPDTIRRAHAVHPITAVQLEW 186 (249)
Q Consensus 108 ~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~-~~~~l~~~~~~~~~~~~q~~~ 186 (249)
++.+++.++...+. +-+.+.-+-+...+.....++....++..++.|.--.+=++.. +.+.+..+++...++.+-.-+
T Consensus 140 ~~~~~~~~~~~~~~-~~~~vvg~~l~~~~~~~~~~~~~~~~~~A~~~g~~v~~H~~E~~~~~~~~~a~~~~g~~~i~H~~ 218 (325)
T cd01320 140 PESAQETLELALKY-RDKGVVGFDLAGDEVGFPPEKFVRAFQRAREAGLRLTAHAGEAGGPESVRDALDLLGAERIGHGI 218 (325)
T ss_pred HHHHHHHHHHHHhc-cCCCEEEeecCCCCCCCCHHHHHHHHHHHHHCCCceEEeCCCCCCHHHHHHHHHHcCCcccchhh
Confidence 45566666655443 2233333333333333455666677777777776555544332 334444455432332221212
Q ss_pred CccccchhhhHHHHHHHhCCcEE
Q 025707 187 SLWARDIENEIVPLCRELGIGIV 209 (249)
Q Consensus 187 n~~~~~~~~~~~~~~~~~gi~v~ 209 (249)
++.. ..+.++..+++|+.|.
T Consensus 219 ~l~~---~~~~~~~l~~~gi~v~ 238 (325)
T cd01320 219 RAIE---DPELVKRLAERNIPLE 238 (325)
T ss_pred ccCc---cHHHHHHHHHcCCeEE
Confidence 2211 2457888888888774
No 256
>PRK07094 biotin synthase; Provisional
Probab=35.84 E-value=2.9e+02 Score=23.89 Aligned_cols=116 Identities=18% Similarity=0.261 Sum_probs=65.4
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCC----CCcCCCchHHHHHHHHHcCCC-CCeEEEecccccccCCcccccCCCHHHHHH
Q 025707 39 LSEEDGISIIKHAFSKGITFFDTA----DKYGPYTNEILLGKALKELPR-ENIQVATKFGFVELGFTSVIVKGTPEYVRS 113 (249)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~Dta----~~Yg~g~se~~lg~~l~~~~r-~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~ 113 (249)
.+.++..+.++.+.+.|++.|--. +.| ....+-+.++.+.. ..+.+..-++ ..+.+.
T Consensus 70 ls~eei~~~~~~~~~~g~~~i~l~gG~~~~~----~~~~l~~l~~~i~~~~~l~i~~~~g-----------~~~~e~--- 131 (323)
T PRK07094 70 LSPEEILECAKKAYELGYRTIVLQSGEDPYY----TDEKIADIIKEIKKELDVAITLSLG-----------ERSYEE--- 131 (323)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEecCCCCCC----CHHHHHHHHHHHHccCCceEEEecC-----------CCCHHH---
Confidence 368888899999999999888533 223 22344444443222 3443322111 122222
Q ss_pred HHHHHHHHcCCCceeEEEeecCC--------CCCCHHHHHHHHHHHHHcCCee----EEEcCCCCHHHHHHHhh
Q 025707 114 CCEASLRRLDVEYIDLYYQHRVD--------TSVPIEETIGEMKKLVEEGKIK----YIGLSEASPDTIRRAHA 175 (249)
Q Consensus 114 ~~~~sL~~Lg~d~iDl~~lh~~~--------~~~~~~~~~~~l~~l~~~G~ir----~iGvs~~~~~~l~~~~~ 175 (249)
+ +.|++.|++.+-+ -+...+ .....++.+++++.+++.|.-- -+|+...+.+.+.+.+.
T Consensus 132 -l-~~Lk~aG~~~v~~-glEs~~~~~~~~i~~~~s~~~~~~~i~~l~~~Gi~v~~~~iiGlpget~ed~~~~l~ 202 (323)
T PRK07094 132 -Y-KAWKEAGADRYLL-RHETADKELYAKLHPGMSFENRIACLKDLKELGYEVGSGFMVGLPGQTLEDLADDIL 202 (323)
T ss_pred -H-HHHHHcCCCEEEe-ccccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCeecceEEEECCCCCHHHHHHHHH
Confidence 2 3466778776542 222211 1245788999999999998632 24666667776665443
No 257
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=35.66 E-value=2.3e+02 Score=22.77 Aligned_cols=70 Identities=24% Similarity=0.245 Sum_probs=44.0
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCCCCcCCCc----hHHHHHHHHHcCCCCCeEEEecccccccCCcccccCCCHHHHHHHH
Q 025707 40 SEEDGISIIKHAFSKGITFFDTADKYGPYT----NEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCC 115 (249)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~g~----se~~lg~~l~~~~r~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~~ 115 (249)
+.++...+.+.|.++|..++=|+-.|..+. .-+.+.+.++ .+- ..|..-.. .+.+...+-+
T Consensus 129 ~~~~i~~a~ria~e~GaD~IKTsTG~~~~~at~~~v~~~~~~~~--~~v----~ik~aGGi---------kt~~~~l~~~ 193 (203)
T cd00959 129 TDEEIIKACEIAIEAGADFIKTSTGFGPGGATVEDVKLMKEAVG--GRV----GVKAAGGI---------RTLEDALAMI 193 (203)
T ss_pred CHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHhC--CCc----eEEEeCCC---------CCHHHHHHHH
Confidence 578899999999999999999998886321 2244444443 122 22322111 2466666667
Q ss_pred HHHHHHcCC
Q 025707 116 EASLRRLDV 124 (249)
Q Consensus 116 ~~sL~~Lg~ 124 (249)
+.-..|+|+
T Consensus 194 ~~g~~riG~ 202 (203)
T cd00959 194 EAGATRIGT 202 (203)
T ss_pred HhChhhccC
Confidence 666677775
No 258
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=35.62 E-value=2.8e+02 Score=23.67 Aligned_cols=147 Identities=12% Similarity=0.119 Sum_probs=80.6
Q ss_pred CCCHHHHHHHHHHHHHcCCCeEeCCCCcCC----CchHHHHHHHHHcCCCCCeEEEecccccccCCcccccCCCHHHHHH
Q 025707 38 PLSEEDGISIIKHAFSKGITFFDTADKYGP----YTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRS 113 (249)
Q Consensus 38 ~~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~----g~se~~lg~~l~~~~r~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~ 113 (249)
.++.++..++++.+.+.|+..|.-+. |. ..-.+++. .++...-.++.|+|-.. .+.
T Consensus 39 ~ls~eei~~~i~~~~~~gi~~I~~tG--GEPll~~~l~~iv~-~l~~~g~~~v~i~TNG~----------------ll~- 98 (302)
T TIGR02668 39 ELSPEEIERIVRVASEFGVRKVKITG--GEPLLRKDLIEIIR-RIKDYGIKDVSMTTNGI----------------LLE- 98 (302)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEEC--cccccccCHHHHHH-HHHhCCCceEEEEcCch----------------HHH-
Confidence 46889999999999999998876532 21 11122222 23322222556665421 111
Q ss_pred HHHHHHHHcCCCceeEEEeecCCC--------CCCHHHHHHHHHHHHHcCC----eeEEEcCCCCHHHHHHHhhc---CC
Q 025707 114 CCEASLRRLDVEYIDLYYQHRVDT--------SVPIEETIGEMKKLVEEGK----IKYIGLSEASPDTIRRAHAV---HP 178 (249)
Q Consensus 114 ~~~~sL~~Lg~d~iDl~~lh~~~~--------~~~~~~~~~~l~~l~~~G~----ir~iGvs~~~~~~l~~~~~~---~~ 178 (249)
..-..|.+.|++.+- +.++..++ ...++.+++.++.+++.|. |..+.+.+.+.+.+.+.++. .+
T Consensus 99 ~~~~~l~~~g~~~v~-iSld~~~~~~~~~i~~~~~~~~vl~~i~~~~~~G~~~v~i~~v~~~g~n~~ei~~~~~~~~~~g 177 (302)
T TIGR02668 99 KLAKKLKEAGLDRVN-VSLDTLDPEKYKKITGRGALDRVIEGIESAVDAGLTPVKLNMVVLKGINDNEIPDMVEFAAEGG 177 (302)
T ss_pred HHHHHHHHCCCCEEE-EEecCCCHHHhhhccCCCcHHHHHHHHHHHHHcCCCcEEEEEEEeCCCCHHHHHHHHHHHHhcC
Confidence 233346667776654 33454432 1357889999999999984 33455555667666665543 34
Q ss_pred ceEEeeecCcccc---------chhhhHHHHHHHhC
Q 025707 179 ITAVQLEWSLWAR---------DIENEIVPLCRELG 205 (249)
Q Consensus 179 ~~~~q~~~n~~~~---------~~~~~~~~~~~~~g 205 (249)
+.+.-+++.+... ....++.+..+++.
T Consensus 178 ~~~~~ie~~p~~~~~~~~~~~~~~~~~i~~~l~~~~ 213 (302)
T TIGR02668 178 AILQLIELMPPGEGEKEFKKYHEDIDPIEEELEKMA 213 (302)
T ss_pred CEEEEEEEeECCCCccchhhceecHHHHHHHHHHhc
Confidence 4433333333221 11255777777664
No 259
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=35.47 E-value=43 Score=26.42 Aligned_cols=68 Identities=10% Similarity=0.116 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHcC-CeeEEEcCCCC--HHHHHHHhhcCCceEEeeecCccccchhhhHHHHHHHhCCcEEeccc
Q 025707 141 IEETIGEMKKLVEEG-KIKYIGLSEAS--PDTIRRAHAVHPITAVQLEWSLWARDIENEIVPLCRELGIGIVPYCP 213 (249)
Q Consensus 141 ~~~~~~~l~~l~~~G-~ir~iGvs~~~--~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~sp 213 (249)
..+++++|.++++.+ +|..+|..+.. ...+.+++. +.+.+..|+-. ......++.+++.|+.++.-+.
T Consensus 63 ~~Dil~al~~a~~~~~~Iavv~~~~~~~~~~~~~~ll~---~~i~~~~~~~~--~e~~~~i~~~~~~G~~viVGg~ 133 (176)
T PF06506_consen 63 GFDILRALAKAKKYGPKIAVVGYPNIIPGLESIEELLG---VDIKIYPYDSE--EEIEAAIKQAKAEGVDVIVGGG 133 (176)
T ss_dssp HHHHHHHHHHCCCCTSEEEEEEESS-SCCHHHHHHHHT----EEEEEEESSH--HHHHHHHHHHHHTT--EEEESH
T ss_pred HhHHHHHHHHHHhcCCcEEEEecccccHHHHHHHHHhC---CceEEEEECCH--HHHHHHHHHHHHcCCcEEECCH
Confidence 456788888877665 66666776654 345555543 45555555432 2226788888888888776543
No 260
>TIGR00314 cdhA CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Acetyl-CoA decarbonylase/synthase (ACDS) is a multienzyme complex. Carbon monoxide dehydrogenase is a synonym. The ACDS complex carries out an unusual reaction involving the reversible cleavage and synthesis of acetyl-CoA in methanogens. The model contains the prosite signature for 4Fe-4S ferredoxins [C-x(2)-C-x(2)-C-x(3)-C-[PEG]] between residues 448-462 of the model.
Probab=35.42 E-value=49 Score=32.76 Aligned_cols=74 Identities=12% Similarity=0.195 Sum_probs=48.0
Q ss_pred HHHHHHHHH--HHHHcCCeeEEEcCCCCHHHHHH---------------HhhcCCceEEeeecCccccchhhhHHHHHHH
Q 025707 141 IEETIGEMK--KLVEEGKIKYIGLSEASPDTIRR---------------AHAVHPITAVQLEWSLWARDIENEIVPLCRE 203 (249)
Q Consensus 141 ~~~~~~~l~--~l~~~G~ir~iGvs~~~~~~l~~---------------~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~ 203 (249)
.+.++++++ +|.++ |.-+|++....+.++. ++.+.-++++-++++=.. .++.+.|+.
T Consensus 246 ~~~iv~~~~~~~l~~~--I~l~GiCCTg~e~~R~~~gv~~~Gn~~~qe~~i~TGavD~~VvD~QCi~----p~l~~~a~c 319 (784)
T TIGR00314 246 GRPIADYLEENGMEDE--VELCGICCTAIDMTRYNAKAKIVGPLSRQLRVIRAGVADVIIVDEQCIR----ADILEECKK 319 (784)
T ss_pred HHHHHHHHhChhHHHH--hceeeeeccccHHhhhccCCcccCcHHHHHHHHHcCCCcEEEEecccCc----ccHHHHHHh
Confidence 345566655 45444 8778887766553311 223344666666655433 569999999
Q ss_pred hCCcEEecccCcc-cccC
Q 025707 204 LGIGIVPYCPLGR-GFFG 220 (249)
Q Consensus 204 ~gi~v~a~spl~~-G~l~ 220 (249)
.+..+|+.++.+. |+.-
T Consensus 320 ~~tklItTs~ka~~gl~d 337 (784)
T TIGR00314 320 MGIPLIATNDKACLGLPD 337 (784)
T ss_pred cCCeEEEcchHHhcCCCc
Confidence 9999999999876 5543
No 261
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=35.27 E-value=1.2e+02 Score=27.48 Aligned_cols=84 Identities=15% Similarity=0.224 Sum_probs=49.1
Q ss_pred HcCCCeEe-----CCCCcCCCchHHHHHHHHHcCCCCCeEEEecccccccC-----CcccccCCCHHHHHHHHHHHHHHc
Q 025707 53 SKGITFFD-----TADKYGPYTNEILLGKALKELPRENIQVATKFGFVELG-----FTSVIVKGTPEYVRSCCEASLRRL 122 (249)
Q Consensus 53 ~~Gi~~~D-----ta~~Yg~g~se~~lg~~l~~~~r~~~~I~tK~~~~~~~-----~~~~~~~~s~~~i~~~~~~sL~~L 122 (249)
+.+..-|| ++.-+. .++..|.+.++.....=+||-||+...-.. +..+......+.|++.+.+.|++-
T Consensus 109 ~~~~~~yD~fiii~s~rf~--~ndv~La~~i~~~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k~ 186 (376)
T PF05049_consen 109 EVKFYRYDFFIIISSERFT--ENDVQLAKEIQRMGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQKA 186 (376)
T ss_dssp HTTGGG-SEEEEEESSS----HHHHHHHHHHHHTT-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHCT
T ss_pred HccccccCEEEEEeCCCCc--hhhHHHHHHHHHcCCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHHHc
Confidence 44555555 344454 688999999987777778999998742111 011111122456888899999999
Q ss_pred CCCceeEEEeecCCCC
Q 025707 123 DVEYIDLYYQHRVDTS 138 (249)
Q Consensus 123 g~d~iDl~~lh~~~~~ 138 (249)
|+....+|++-+.+..
T Consensus 187 gv~~P~VFLVS~~dl~ 202 (376)
T PF05049_consen 187 GVSEPQVFLVSSFDLS 202 (376)
T ss_dssp T-SS--EEEB-TTTTT
T ss_pred CCCcCceEEEeCCCcc
Confidence 9999999999887654
No 262
>TIGR02814 pfaD_fam PfaD family protein. The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.
Probab=35.16 E-value=2e+02 Score=26.59 Aligned_cols=89 Identities=16% Similarity=0.171 Sum_probs=55.3
Q ss_pred HHHHcCCCceeEEEeecCCC-CCCHHHHHHHHHHHHHcCCeeEEEcCCCCHHHHHHHhhc------C-C-ceEEeeecCc
Q 025707 118 SLRRLDVEYIDLYYQHRVDT-SVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAV------H-P-ITAVQLEWSL 188 (249)
Q Consensus 118 sL~~Lg~d~iDl~~lh~~~~-~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~------~-~-~~~~q~~~n~ 188 (249)
.++.||++|. ++..|.. ... .-+-...+-+.|-...+|....+++++++.+.. . + +-++-+ ++.
T Consensus 11 f~~~lgiryP---iiqgpMa~GiS---s~eLVaAVs~AGgLG~lgag~l~~e~l~~~I~~ir~~~~~~p~fGVNL~-~~~ 83 (444)
T TIGR02814 11 FREDYGVRYA---YVAGAMANGIA---SAELVIAMGRAGILGFFGAGGLPLEEVEQAIHRIQQALPGGPAYGVNLI-HSP 83 (444)
T ss_pred HHHHhCCCCc---EECccccCCCC---CHHHHHHHHhCCceeeeCCCCCCHHHHHHHHHHHHHhcCCCCceEEEec-ccC
Confidence 3567788775 3333332 121 223334566889999999999999998877654 1 3 443332 222
Q ss_pred cccchhhhHHHHHHHhCCcEEeccc
Q 025707 189 WARDIENEIVPLCRELGIGIVPYCP 213 (249)
Q Consensus 189 ~~~~~~~~~~~~~~~~gi~v~a~sp 213 (249)
-++..+..+++.|.++++.++..+-
T Consensus 84 ~~~~~e~~~v~l~l~~~V~~veasa 108 (444)
T TIGR02814 84 SDPALEWGLVDLLLRHGVRIVEASA 108 (444)
T ss_pred CCcccHHHHHHHHHHcCCCEEEecc
Confidence 2222235789999999999887654
No 263
>PF07555 NAGidase: beta-N-acetylglucosaminidase ; InterPro: IPR011496 This family consists of both eukaryotic and prokaryotic hyaluronidases. Human Q9HAR0 from SWISSPROT is expressed during meningioma []. Clostridium perfringens, P26831 from SWISSPROT, is involved in pathogenesis and is likely to act on connectivity tissue during gas gangrene []. It catalyses the random hydrolysis of 1->4-linkages between N-acetyl-beta-D-glucosamine and D-glucuronate residues in hyaluronate.; PDB: 2WB5_B 2V5C_B 2VUR_A 2V5D_A 2YDS_A 2CBI_A 2XPK_A 2CBJ_B 2J62_A 2X0Y_A ....
Probab=35.03 E-value=95 Score=27.15 Aligned_cols=102 Identities=16% Similarity=0.237 Sum_probs=52.6
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHcCCCeEeCCCCcCCCchHHHHHHHHHcCCCCCeEEEecccccccCCcccccCCCHHHH
Q 025707 32 SGCYNSPLSEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYV 111 (249)
Q Consensus 32 ~~~~~~~~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~g~se~~lg~~l~~~~r~~~~I~tK~~~~~~~~~~~~~~~s~~~i 111 (249)
.|.||.+-+.++-..+++..-+.|.|.+ .|+ |.++.+...|+.-.. ..+.+
T Consensus 5 EGFYG~PWs~e~R~~l~~f~~~~kmN~Y----iYA---------------PKdDpyhr~~Wre~Y----------p~~el 55 (306)
T PF07555_consen 5 EGFYGRPWSHEDRLDLIRFLGRYKMNTY----IYA---------------PKDDPYHRSKWREPY----------PEEEL 55 (306)
T ss_dssp E-SSSS---HHHHHHHHHHHHHTT--EE----EE-----------------TT-TTTTTTTTS-------------HHHH
T ss_pred eCcCCCCCCHHHHHHHHHHHHHcCCceE----EEC---------------CCCChHHHhhhcccC----------CHHHH
Confidence 3457777789999999999999999987 454 344444444543322 12222
Q ss_pred HHHHHHHHHHcCCCceeEEEeecCCCC------CCHHHHHHHHHHHHHcCCeeEEEcCC
Q 025707 112 RSCCEASLRRLDVEYIDLYYQHRVDTS------VPIEETIGEMKKLVEEGKIKYIGLSE 164 (249)
Q Consensus 112 ~~~~~~sL~~Lg~d~iDl~~lh~~~~~------~~~~~~~~~l~~l~~~G~ir~iGvs~ 164 (249)
+.+.+..+.=....+|+++-=.|... .+++.+...++++.+.| ||.+||.-
T Consensus 56 -~~l~~L~~~a~~~~V~Fv~aisPg~~~~~s~~~d~~~L~~K~~ql~~lG-vr~Failf 112 (306)
T PF07555_consen 56 -AELKELADAAKANGVDFVYAISPGLDICYSSEEDFEALKAKFDQLYDLG-VRSFAILF 112 (306)
T ss_dssp -HHHHHHHHHHHHTT-EEEEEEBGTTT--TSHHHHHHHHHHHHHHHHCTT---EEEEE-
T ss_pred -HHHHHHHHHHHHcCCEEEEEECcccccccCcHHHHHHHHHHHHHHHhcC-CCEEEEee
Confidence 33333333333345566665444332 24556788888888885 68888753
No 264
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=34.98 E-value=3e+02 Score=23.76 Aligned_cols=146 Identities=11% Similarity=0.100 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHHcCCCeEeCCCCcCCCchHHHHHHHHHcCCCCCeEEEecccccccCCcccccCCCHHHHHHHHHHHHH
Q 025707 41 EEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLR 120 (249)
Q Consensus 41 ~~~~~~~l~~A~~~Gi~~~Dta~~Yg~g~se~~lg~~l~~~~r~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~ 120 (249)
.....++-....+.|+|..|.+..-. .....+++...+.... ..+.+.++++++...+
T Consensus 18 pGIVa~VT~~La~~~vNI~dls~~~~--------------~~~~~F~m~~~~~~p~--------~~~~~~L~~~L~~l~~ 75 (286)
T PRK13011 18 AGIVAAVTGFLAEHGCYITELHSFDD--------------RLSGRFFMRVEFHSEE--------GLDEDALRAGFAPIAA 75 (286)
T ss_pred CCHHHHHHHHHHhCCCCEEEeeeeec--------------CCCCeEEEEEEEecCC--------CCCHHHHHHHHHHHHH
Confidence 44556666666799999999886411 1233344333332111 2458899999999999
Q ss_pred HcCCCceeEEEeecCCCCC-------CHHHHHHHHHHHHHcCCe--eEEEc-CCCCHHHHHHHhhcCCceEEeeecCccc
Q 025707 121 RLDVEYIDLYYQHRVDTSV-------PIEETIGEMKKLVEEGKI--KYIGL-SEASPDTIRRAHAVHPITAVQLEWSLWA 190 (249)
Q Consensus 121 ~Lg~d~iDl~~lh~~~~~~-------~~~~~~~~l~~l~~~G~i--r~iGv-s~~~~~~l~~~~~~~~~~~~q~~~n~~~ 190 (249)
.|+++ +.++.+.... .....+++|-...+.|.. .-.+| ||... +..+.....+.+.+++.....
T Consensus 76 ~l~l~----i~i~~~~~~~ri~vl~Sg~g~nl~al~~~~~~~~~~~~i~~visn~~~--~~~lA~~~gIp~~~~~~~~~~ 149 (286)
T PRK13011 76 RFGMQ----WELHDPAARPKVLIMVSKFDHCLNDLLYRWRIGELPMDIVGVVSNHPD--LEPLAAWHGIPFHHFPITPDT 149 (286)
T ss_pred HhCcE----EEEeecccCceEEEEEcCCcccHHHHHHHHHcCCCCcEEEEEEECCcc--HHHHHHHhCCCEEEeCCCcCc
Confidence 99985 2333332321 123456777777777753 44443 55532 222234444555555544422
Q ss_pred cc-hhhhHHHHHHHhCCcEEecccC
Q 025707 191 RD-IENEIVPLCRELGIGIVPYCPL 214 (249)
Q Consensus 191 ~~-~~~~~~~~~~~~gi~v~a~spl 214 (249)
+. .+..+.+..++.++.++...-+
T Consensus 150 ~~~~~~~~~~~l~~~~~Dlivlagy 174 (286)
T PRK13011 150 KPQQEAQVLDVVEESGAELVVLARY 174 (286)
T ss_pred hhhhHHHHHHHHHHhCcCEEEEeCh
Confidence 22 2356788899988877755444
No 265
>PRK07811 cystathionine gamma-synthase; Provisional
Probab=34.94 E-value=3.3e+02 Score=24.34 Aligned_cols=101 Identities=13% Similarity=0.115 Sum_probs=56.7
Q ss_pred HHHHHHHHcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCCHHHHHHHhhc-CCceEEeeecCccccc
Q 025707 114 CCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAV-HPITAVQLEWSLWARD 192 (249)
Q Consensus 114 ~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~-~~~~~~q~~~n~~~~~ 192 (249)
++...+..| +..=|-+++..+.. ...+..+..+...-.++..-+...+++.+++++.. .+..++..+.|+.-..
T Consensus 88 Ai~~~l~al-l~~Gd~Vl~~~~~y----~~t~~~~~~~~~~~gi~~~~~d~~d~e~l~~~i~~~tklV~ie~p~NPtg~~ 162 (388)
T PRK07811 88 ATDCLLRAV-LRPGDHIVIPNDAY----GGTFRLIDKVFTRWGVEYTPVDLSDLDAVRAAITPRTKLIWVETPTNPLLSI 162 (388)
T ss_pred HHHHHHHHH-hCCCCEEEEcCCCc----hHHHHHHHHhCcCCCeEEEEeCCCCHHHHHHhcCcCCeEEEEECCCCCccee
Confidence 334444333 23335566644422 22333333322221233333444577888877643 4555666777775432
Q ss_pred hh-hhHHHHHHHhCCcEEecccCccccc
Q 025707 193 IE-NEIVPLCRELGIGIVPYCPLGRGFF 219 (249)
Q Consensus 193 ~~-~~~~~~~~~~gi~v~a~spl~~G~l 219 (249)
.. ..+.+.|+++|+.++.=..++.+..
T Consensus 163 ~dl~~I~~la~~~gi~lIvD~a~a~~~~ 190 (388)
T PRK07811 163 TDIAALAELAHDAGAKVVVDNTFASPYL 190 (388)
T ss_pred cCHHHHHHHHHHcCCEEEEECCCCcccc
Confidence 22 8899999999999998777766644
No 266
>TIGR03820 lys_2_3_AblA lysine-2,3-aminomutase. This model describes lysine-2,3-aminomutase as found along with beta-lysine acetyltransferase in a two-enzyme pathway for making the compatible solute N-epsilon-acetyl-beta-lysine. This compatible solute, or osmolyte, is known to protect a number of methanogenic archaea against salt stress. The trusted cutoff distinguishes a tight clade with essentially full-length homology from additional homologs that are shorter or highly diverged in the C-terminal region. All members of this family have the radical SAM motif CXXXCXXC, while some but not all have a second copy of the motif in the C-terminal region.
Probab=34.94 E-value=3.6e+02 Score=24.74 Aligned_cols=123 Identities=15% Similarity=0.085 Sum_probs=72.1
Q ss_pred CCHHHHHHHHHHHHHc-CCCeEeCCCCcCCCchHHH---HHHHHHcCCCC-CeEEEecccccccCCcccccCCCHHHHHH
Q 025707 39 LSEEDGISIIKHAFSK-GITFFDTADKYGPYTNEIL---LGKALKELPRE-NIQVATKFGFVELGFTSVIVKGTPEYVRS 113 (249)
Q Consensus 39 ~~~~~~~~~l~~A~~~-Gi~~~Dta~~Yg~g~se~~---lg~~l~~~~r~-~~~I~tK~~~~~~~~~~~~~~~s~~~i~~ 113 (249)
.+.++..++++..-+. ||+-+=-+..-.--.+... +-+.|+.++.= .+-|.|+..... |..|..
T Consensus 138 ls~eei~~~i~yI~~~p~I~~VlLSGGDPLll~d~~L~~iL~~L~~IphV~~IRI~TR~pvv~-----------P~RIT~ 206 (417)
T TIGR03820 138 PSKEQILEGIEYIRNTPQIRDVLLSGGDPLLLSDDYLDWILTELRAIPHVEVIRIGTRVPVVL-----------PQRITD 206 (417)
T ss_pred CCHHHHHHHHHHHHhcCCCCEEEEeCCccccCChHHHHHHHHHHhhcCCCceEEEeecccccc-----------ccccCH
Confidence 4678888988887764 8874433321111112222 33344444443 366777764332 344445
Q ss_pred HHHHHHHHcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCCeeEE------EcCCCCHHHHHHHhhc
Q 025707 114 CCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYI------GLSEASPDTIRRAHAV 176 (249)
Q Consensus 114 ~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~i------Gvs~~~~~~l~~~~~~ 176 (249)
.+-+.|++.+ .-.+.+|.-...+-..++.++++.|++.|..-.. | -|-+++.+.++...
T Consensus 207 ell~~Lk~~~---~~~v~~h~nhp~Eit~~a~~Al~~L~~aGI~l~nQsVLLkG-VND~~~~l~~L~~~ 271 (417)
T TIGR03820 207 ELVAILKKHH---PVWLNTHFNHPREITASSKKALAKLADAGIPLGNQSVLLAG-VNDCPRIMKKLVHK 271 (417)
T ss_pred HHHHHHHhcC---CeEEEEeCCChHhChHHHHHHHHHHHHcCCEEEeeceEECC-cCCCHHHHHHHHHH
Confidence 5666666665 3455677655555578899999999999964222 2 25567776666543
No 267
>PRK00912 ribonuclease P protein component 3; Provisional
Probab=34.92 E-value=2.6e+02 Score=23.06 Aligned_cols=141 Identities=12% Similarity=0.137 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHHcCCCeEeCCCCcCCCchHHHHHHHHHcCCCCCeEEEecccccccCCcccccCCCHHHHHHHHHHHHH
Q 025707 41 EEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLR 120 (249)
Q Consensus 41 ~~~~~~~l~~A~~~Gi~~~Dta~~Yg~g~se~~lg~~l~~~~r~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~ 120 (249)
.....++++.|.+.|+..|=.+.+...........+.++ ++-|-+-+-.. ...++.+.+ .++
T Consensus 15 ~~~~~e~i~~A~~~Gl~~i~itdH~~~~~~~~~~~~~~~-----~i~Il~GiEi~---------~~~~~~~~~----~~~ 76 (237)
T PRK00912 15 YDTVLRLISEASHLGYSGIALSNHSDKYPESKPELEDLL-----GFEIFRGVEIV---------ASNPSKLRG----LVG 76 (237)
T ss_pred cchHHHHHHHHHHCCCCEEEEecCcccccchhHHHHHhc-----CCcEEeeEEEe---------cCCHHHHHH----HHH
Confidence 456789999999999999866655421111111111221 23332222110 122344333 333
Q ss_pred HcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCCeeEEEcCCC-------CHHHHHHHhhcCCceEEeeecCccccc-
Q 025707 121 RLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEA-------SPDTIRRAHAVHPITAVQLEWSLWARD- 192 (249)
Q Consensus 121 ~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~-------~~~~l~~~~~~~~~~~~q~~~n~~~~~- 192 (249)
+. .+.+|++.+|.- . +++ .+...+.+.|--||-... ....++.+.+. . .++.++++.+.+.
T Consensus 77 ~~-~~~~d~v~v~~~-~----~~~---~~~a~~~~~vdIi~hp~~~~~~~~~~~~~~~~a~~~-g-v~lEIn~s~~~~~~ 145 (237)
T PRK00912 77 KF-RKKVDVLAVHGG-D----EKV---NRAACENPRVDILSHPYTKRKDSGINHVLAKEAARN-N-VAIEFNLRDILKSR 145 (237)
T ss_pred hc-cCcccEEEEeCC-C----HHH---HHHHHccCCCcEEeCccccCCCCCcCHHHHHHHHHC-C-eEEEEEchHhhhhc
Confidence 32 235788889822 1 122 235778888888877542 22223333332 2 2445555543211
Q ss_pred ---------hhhhHHHHHHHhCCcEEe
Q 025707 193 ---------IENEIVPLCRELGIGIVP 210 (249)
Q Consensus 193 ---------~~~~~~~~~~~~gi~v~a 210 (249)
....++..|++.|++++.
T Consensus 146 ~~~r~~~~~~~~~~~~~~~~~g~piii 172 (237)
T PRK00912 146 GGRRARTLSNFRDNLALARKYDFPLVL 172 (237)
T ss_pred ccHHHHHHHHHHHHHHHHHhcCCCEEE
Confidence 115799999999998874
No 268
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=34.79 E-value=3.9e+02 Score=25.06 Aligned_cols=24 Identities=17% Similarity=0.282 Sum_probs=20.9
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCC
Q 025707 39 LSEEDGISIIKHAFSKGITFFDTA 62 (249)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~Dta 62 (249)
.+.++-.++.+.-.+.||..|+..
T Consensus 20 ~s~e~K~~ia~~L~~~GV~~IEvG 43 (494)
T TIGR00973 20 LTVEEKLQIALALERLGVDIIEAG 43 (494)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEE
Confidence 477888999999889999999975
No 269
>PRK08621 galactose-6-phosphate isomerase subunit LacA; Reviewed
Probab=34.76 E-value=2.1e+02 Score=21.98 Aligned_cols=96 Identities=9% Similarity=0.072 Sum_probs=67.3
Q ss_pred CCHHHHHHHHHHHHHHcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCCe-eEEEcCCCCHHHHHHHhhcCCceEEee
Q 025707 106 GTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKI-KYIGLSEASPDTIRRAHAVHPITAVQL 184 (249)
Q Consensus 106 ~s~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~i-r~iGvs~~~~~~l~~~~~~~~~~~~q~ 184 (249)
+.--.+++.+.+-|+..|.+-+|+-- ++..+..+....+.+.+.+|.. +.|-+|....-.-..+.+...+.+.+.
T Consensus 9 haG~~lK~~l~~~L~~~G~eV~D~G~----~~~~dYpd~a~~va~~V~~~~~~~GIliCGTGiG~siaANK~~GIRAA~~ 84 (142)
T PRK08621 9 KAGFELKEVVKDYLEDNKYEVVDVTE----EGAEDFVDSTLAVAKEVNKSEDNLGIVIDAYGAGSFMVATKIKGMVAAEV 84 (142)
T ss_pred cchHHHHHHHHHHHHHCCCEEEECCC----CCCCCcHHHHHHHHHHHHcCCCceEEEEcCCChhhhhhhhcCCCeEEEEE
Confidence 44567889999999999988888743 3446677888888888888876 888888888766555555566665555
Q ss_pred ecCccccchhhhHHHHHHHh-CCcEEeccc
Q 025707 185 EWSLWARDIENEIVPLCREL-GIGIVPYCP 213 (249)
Q Consensus 185 ~~n~~~~~~~~~~~~~~~~~-gi~v~a~sp 213 (249)
. +....+.+++| +..|++.+.
T Consensus 85 ~--------d~~~A~~ar~hNnaNVL~lG~ 106 (142)
T PRK08621 85 S--------DERSAYMTRGHNNARMITMGS 106 (142)
T ss_pred C--------CHHHHHHHHHHcCCcEEEECc
Confidence 2 23455566655 677776543
No 270
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=34.75 E-value=2.8e+02 Score=23.30 Aligned_cols=24 Identities=17% Similarity=0.320 Sum_probs=21.8
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCC
Q 025707 39 LSEEDGISIIKHAFSKGITFFDTA 62 (249)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~Dta 62 (249)
.+.++..++++.-.++||..+++.
T Consensus 17 ~~~~~k~~i~~~L~~~Gv~~iE~g 40 (259)
T cd07939 17 FSREEKLAIARALDEAGVDEIEVG 40 (259)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEe
Confidence 478999999999999999999996
No 271
>PHA02128 hypothetical protein
Probab=34.75 E-value=1.6e+02 Score=21.53 Aligned_cols=70 Identities=14% Similarity=0.232 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHcCCeeEEEcCCCCHHHHHHHhhc------------------CCceEEee---ecCccccchhhhHHHH
Q 025707 142 EETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAV------------------HPITAVQL---EWSLWARDIENEIVPL 200 (249)
Q Consensus 142 ~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~------------------~~~~~~q~---~~n~~~~~~~~~~~~~ 200 (249)
...+....++..+|-+|-|-+...+..++...... ..+.+.++ +|.+..+...+++.++
T Consensus 60 ~gl~~lane~~aqgg~r~itmn~ankrhv~dmv~~~wrgdi~ist~selt~~cp~vkflmideseytltsrh~rqeiydw 139 (151)
T PHA02128 60 TGLLHLANEVSAQGGARIITMNSANKRHVQDMVSYQWRGDIRISTISELTDRCPKVKFLMIDESEYTLTSRHQRQEIYDW 139 (151)
T ss_pred chHHHHHHHHHhcCCeEEEEeccchhhHHHHHhcccccCceEEeeHHHHhccCCeeEEEEEcchhceecchhhHHHHHhh
Confidence 45677778899999999999888777666655321 11223333 5777777667999999
Q ss_pred HHHhCCcEEec
Q 025707 201 CRELGIGIVPY 211 (249)
Q Consensus 201 ~~~~gi~v~a~ 211 (249)
+--||+.++.+
T Consensus 140 agthgvefvim 150 (151)
T PHA02128 140 AGTHGVEFVIM 150 (151)
T ss_pred cccCceEEEEe
Confidence 99999987754
No 272
>cd01973 Nitrogenase_VFe_beta_like Nitrogenase_VFe_beta -like: Nitrogenase VFe protein, beta subunit like. This group contains proteins similar to the beta subunits of the VFe protein of the vanadium-dependent (V-) nitrogenase. Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V-nitrogenase there is a molybdenum (Mo)-dependent nitrogenase and an iron only (Fe-) nitrogenase. The Mo-nitrogenase is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe p
Probab=34.51 E-value=3.8e+02 Score=24.80 Aligned_cols=110 Identities=12% Similarity=0.100 Sum_probs=57.1
Q ss_pred CCCcCCCchHHHHHHHHHc----CC-CCCeEEEecccccccCCcccccCCCHHHHHHHHHHHHHHcCCC----ceeEEEe
Q 025707 62 ADKYGPYTNEILLGKALKE----LP-RENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLDVE----YIDLYYQ 132 (249)
Q Consensus 62 a~~Yg~g~se~~lg~~l~~----~~-r~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~~Lg~d----~iDl~~l 132 (249)
.-.|| .|+-|-+++++ .+ .+=++|.|-....-- -+.+..-+++.-+++.-+ .+.++.+
T Consensus 65 d~VfG---G~~~L~~~I~~~~~~~~~p~~I~V~tTC~~eiI----------GDDi~~vv~~~~~~~~~e~~~~~~~vi~v 131 (454)
T cd01973 65 SAVFG---GAKRVEEGVLVLARRYPDLRVIPIITTCSTEII----------GDDIEGVIRKLNEALKEEFPDREVHLIPV 131 (454)
T ss_pred ceEEC---cHHHHHHHHHHHHHhcCCCCEEEEECCchHhhh----------ccCHHHHHHHHHhhhhhccCCCCCeEEEe
Confidence 34777 77778788877 22 233566665432211 112222222222222111 4678888
Q ss_pred ecCCCCCC----HHHHHHHHH-HHHH----cCCeeEEEcCC--CCHHHHHHHhhcCCceEEee
Q 025707 133 HRVDTSVP----IEETIGEMK-KLVE----EGKIKYIGLSE--ASPDTIRRAHAVHPITAVQL 184 (249)
Q Consensus 133 h~~~~~~~----~~~~~~~l~-~l~~----~G~ir~iGvs~--~~~~~l~~~~~~~~~~~~q~ 184 (249)
+.|+-.-. .+.+++++- .+.. +++|--||-.+ .+.+.+.++++...+.++.+
T Consensus 132 ~tpgF~Gs~~~G~~~a~~ali~~~~~~~~~~~~VNii~~~~~~~D~~ei~~lL~~~Gl~v~~~ 194 (454)
T cd01973 132 HTPSFKGSMVTGYDEAVRSVVKTIAKKGAPSGKLNVFTGWVNPGDVVELKHYLSEMDVEANIL 194 (454)
T ss_pred eCCCcCCCHHHHHHHHHHHHHHHhcccCCCCCcEEEECCCCChHHHHHHHHHHHHcCCCEEEe
Confidence 88866533 223333332 2221 46788887432 34467777777777776655
No 273
>TIGR01060 eno phosphopyruvate hydratase. Alternate name: enolase
Probab=34.48 E-value=3.7e+02 Score=24.64 Aligned_cols=96 Identities=11% Similarity=0.062 Sum_probs=60.8
Q ss_pred CCHHHHHHHHHHHHHHcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcC--CeeEEEcCC--CCHHHHHHHhhcCCceE
Q 025707 106 GTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEG--KIKYIGLSE--ASPDTIRRAHAVHPITA 181 (249)
Q Consensus 106 ~s~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G--~ir~iGvs~--~~~~~l~~~~~~~~~~~ 181 (249)
++++...+-+++.++.+ ++.++..|-... -++.+.+|.+.- .+.-+|=-. .++..+.++++....++
T Consensus 262 ~s~~eai~~~~~lle~~-----~i~~iEdPl~~~----D~~~~~~L~~~~~~~ipI~gDE~~~t~~~~~~~~i~~~a~d~ 332 (425)
T TIGR01060 262 LTSEEMIEYYKELVEKY-----PIVSIEDGLSEE----DWEGWAELTKELGDKVQIVGDDLFVTNTEILREGIEMGVANS 332 (425)
T ss_pred cCHHHHHHHHHHHHhcC-----CcEEEEcCCCcc----cHHHHHHHHHhcCCCCeEEeCCCcccCHHHHHHHHHhCCCCE
Confidence 34555555454444444 567777664433 356666666553 454444332 25889999988888888
Q ss_pred EeeecCccccc-hhhhHHHHHHHhCCcEEe
Q 025707 182 VQLEWSLWARD-IENEIVPLCRELGIGIVP 210 (249)
Q Consensus 182 ~q~~~n~~~~~-~~~~~~~~~~~~gi~v~a 210 (249)
+|+..|-+-.- ...++.+.|+++|+.++.
T Consensus 333 v~ik~~~iGGItea~~ia~lA~~~Gi~~vv 362 (425)
T TIGR01060 333 ILIKPNQIGTLTETLDAVELAKKAGYTAVI 362 (425)
T ss_pred EEecccccCCHHHHHHHHHHHHHcCCcEEE
Confidence 98887654321 127799999999998553
No 274
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=34.41 E-value=3.2e+02 Score=23.94 Aligned_cols=138 Identities=16% Similarity=0.206 Sum_probs=73.7
Q ss_pred CCCHHHHHHHH-------HHHHHcCCCeEeCCC-------------------CcCCCchH------HHHHHHHHcCCCCC
Q 025707 38 PLSEEDGISII-------KHAFSKGITFFDTAD-------------------KYGPYTNE------ILLGKALKELPREN 85 (249)
Q Consensus 38 ~~~~~~~~~~l-------~~A~~~Gi~~~Dta~-------------------~Yg~g~se------~~lg~~l~~~~r~~ 85 (249)
.++.++...++ +.|.++|+..|+.-- .|| |.-| ..+-+++++.-.++
T Consensus 143 ~mt~~eI~~ii~~~~~aA~~a~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yG-gsl~nr~rf~~eiv~aIR~~vG~d 221 (336)
T cd02932 143 ELTREEIAEVVDAFVAAARRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYG-GSLENRMRFLLEVVDAVRAVWPED 221 (336)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccccHHHHhcCCccCCCCcccC-CCHHHHhHHHHHHHHHHHHHcCCC
Confidence 35666665544 466788999987632 223 1111 12223333333456
Q ss_pred eEEEecccccccCCcccccCCCHHHHHHHHHHHHHHcCCCceeEEEeecCCC--C--CCH--HHHHHHHHHHHHcCCeeE
Q 025707 86 IQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDT--S--VPI--EETIGEMKKLVEEGKIKY 159 (249)
Q Consensus 86 ~~I~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~--~--~~~--~~~~~~l~~l~~~G~ir~ 159 (249)
+.|..|+...... ....+.+... .+-+.|+..|+|++++ |.... . ... ...++.++++++.=.|--
T Consensus 222 ~~v~vri~~~~~~----~~g~~~~e~~-~ia~~Le~~gvd~iev---~~g~~~~~~~~~~~~~~~~~~~~~ir~~~~iPV 293 (336)
T cd02932 222 KPLFVRISATDWV----EGGWDLEDSV-ELAKALKELGVDLIDV---SSGGNSPAQKIPVGPGYQVPFAERIRQEAGIPV 293 (336)
T ss_pred ceEEEEEcccccC----CCCCCHHHHH-HHHHHHHHcCCCEEEE---CCCCCCcccccCCCccccHHHHHHHHhhCCCCE
Confidence 7788887643211 0123343332 3334566778766653 32110 0 011 123456667777666777
Q ss_pred EEcCCC-CHHHHHHHhhcCCceEEee
Q 025707 160 IGLSEA-SPDTIRRAHAVHPITAVQL 184 (249)
Q Consensus 160 iGvs~~-~~~~l~~~~~~~~~~~~q~ 184 (249)
++.... +++..+++++....+.+++
T Consensus 294 i~~G~i~t~~~a~~~l~~g~aD~V~~ 319 (336)
T cd02932 294 IAVGLITDPEQAEAILESGRADLVAL 319 (336)
T ss_pred EEeCCCCCHHHHHHHHHcCCCCeehh
Confidence 777765 7778888888766777666
No 275
>PRK07328 histidinol-phosphatase; Provisional
Probab=34.27 E-value=2.8e+02 Score=23.33 Aligned_cols=107 Identities=14% Similarity=0.161 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHcCCCeEeCCCCcCC------------CchHHHHHHHHHc-------CCCCCeEEEecccccccCCcccc
Q 025707 43 DGISIIKHAFSKGITFFDTADKYGP------------YTNEILLGKALKE-------LPRENIQVATKFGFVELGFTSVI 103 (249)
Q Consensus 43 ~~~~~l~~A~~~Gi~~~Dta~~Yg~------------g~se~~lg~~l~~-------~~r~~~~I~tK~~~~~~~~~~~~ 103 (249)
...+++++|.+.|+..+=.+.+... +.....+-..+++ ..+=+|.+.-=+..
T Consensus 19 ~~ee~v~~A~~~Gl~~i~~TdH~~~~~~~~~~~~~~~~~~~~~~~~y~~~i~~l~~~y~~i~Il~GiE~~~--------- 89 (269)
T PRK07328 19 TPEEYVQAARRAGLKEIGFTDHLPMYFLPPEWRDPGLAMRLEELPFYVSEVERLRARFPDLYVRLGIEADY--------- 89 (269)
T ss_pred CHHHHHHHHHHCCCCEEEEecCCCCCCcCcccccccccccHHHHHHHHHHHHHHHHHcCCCeEEEEEEecc---------
Confidence 3678899999999999866654321 0111122222222 11112222222221
Q ss_pred cCCCHHHHHHHHHHHHHHcCCCceeEEEeecCCCC-------------CCHHHH----HHHHHHHHHcCCeeEEEcC
Q 025707 104 VKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTS-------------VPIEET----IGEMKKLVEEGKIKYIGLS 163 (249)
Q Consensus 104 ~~~s~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~-------------~~~~~~----~~~l~~l~~~G~ir~iGvs 163 (249)
-+ .....+++.|++...|++ +..+|..+.. ...+++ ++.+.++.+.|.+.-+|=-
T Consensus 90 ---~~-~~~~~~~~~l~~~~~D~v-igSvH~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~~dvlgH~ 161 (269)
T PRK07328 90 ---HP-GTEEFLERLLEAYPFDYV-IGSVHYLGAWGFDNPDFVAEYEERDLDELYRRYFALVEQAARSGLFDIIGHP 161 (269)
T ss_pred ---cC-CcHHHHHHHHHhCCCCeE-EEEEeecCCcCCCChhHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCCEeeCc
Confidence 12 234556667777777776 7778986421 122233 3456777788877766644
No 276
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=33.89 E-value=2.9e+02 Score=23.37 Aligned_cols=131 Identities=16% Similarity=0.158 Sum_probs=76.6
Q ss_pred CHHHHHHHHHHHHHcCCCeEeC---CCCcCCC----chHHHHHHHHHcCCC-CCeEEEecccccccCCcccccCCCHHHH
Q 025707 40 SEEDGISIIKHAFSKGITFFDT---ADKYGPY----TNEILLGKALKELPR-ENIQVATKFGFVELGFTSVIVKGTPEYV 111 (249)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~Dt---a~~Yg~g----~se~~lg~~l~~~~r-~~~~I~tK~~~~~~~~~~~~~~~s~~~i 111 (249)
+.++..+..+.+.+.|+..|+. ++....+ ...+.+.+.++...+ -++-|+-|+... .+.+.+
T Consensus 109 ~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~----------~~~~~~ 178 (289)
T cd02810 109 SKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAVDIPLLVKLSPY----------FDLEDI 178 (289)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHccCCCEEEEeCCC----------CCHHHH
Confidence 5788889999999999999985 3333221 234455555554211 156677887643 234444
Q ss_pred HHHHHHHHHHcCCCceeEEEeecCCC-------------C--------CCH-HHHHHHHHHHHHcC--CeeEEEcCCC-C
Q 025707 112 RSCCEASLRRLDVEYIDLYYQHRVDT-------------S--------VPI-EETIGEMKKLVEEG--KIKYIGLSEA-S 166 (249)
Q Consensus 112 ~~~~~~sL~~Lg~d~iDl~~lh~~~~-------------~--------~~~-~~~~~~l~~l~~~G--~ir~iGvs~~-~ 166 (249)
.+-++ .++..|+|.+ .+|+-.. . ..+ .-.++.+.++++.= .+.-||.... +
T Consensus 179 ~~~a~-~l~~~Gad~i---~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v~~i~~~~~~~ipiia~GGI~~ 254 (289)
T cd02810 179 VELAK-AAERAGADGL---TAINTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVARLAARLQLDIPIIGVGGIDS 254 (289)
T ss_pred HHHHH-HHHHcCCCEE---EEEcccCccceecccCccccCCCCCccCcHHHHHHHHHHHHHHHHhcCCCCCEEEECCCCC
Confidence 44333 4667786555 4443210 0 001 12466777777653 6778888775 4
Q ss_pred HHHHHHHhhcCCceEEeee
Q 025707 167 PDTIRRAHAVHPITAVQLE 185 (249)
Q Consensus 167 ~~~l~~~~~~~~~~~~q~~ 185 (249)
++.+.+++.. ..+.+|+-
T Consensus 255 ~~da~~~l~~-GAd~V~vg 272 (289)
T cd02810 255 GEDVLEMLMA-GASAVQVA 272 (289)
T ss_pred HHHHHHHHHc-CccHheEc
Confidence 6777777764 46667763
No 277
>smart00148 PLCXc Phospholipase C, catalytic domain (part); domain X. Phosphoinositide-specific phospholipases C. These enzymes contain 2 regions (X and Y) which together form a TIM barrel-like structure containing the active site residues. Phospholipase C enzymes (PI-PLC) act as signal transducers that generate two second messengers, inositol-1,4,5-trisphosphate and diacylglycerol. The bacterial enzyme [6] appears to be a homologue of the mammalian PLCs.
Probab=33.87 E-value=1.8e+02 Score=21.82 Aligned_cols=18 Identities=11% Similarity=0.158 Sum_probs=15.2
Q ss_pred HHHHHHHHHcCCCeEeCC
Q 025707 45 ISIIKHAFSKGITFFDTA 62 (249)
Q Consensus 45 ~~~l~~A~~~Gi~~~Dta 62 (249)
...+..+++.|+|+||.-
T Consensus 31 ~~~i~~qL~~GvR~~dir 48 (135)
T smart00148 31 VEGYIQALDHGCRCVELD 48 (135)
T ss_pred HHHHHHHHHhCCCEEEEE
Confidence 467889999999999854
No 278
>PRK07503 methionine gamma-lyase; Provisional
Probab=33.84 E-value=2.5e+02 Score=25.28 Aligned_cols=63 Identities=8% Similarity=0.102 Sum_probs=41.3
Q ss_pred eeEEEcCCCCHHHHHHHhhc-CCceEEeeecCccccchh-hhHHHHHHHhCCcEEecccCccccc
Q 025707 157 IKYIGLSEASPDTIRRAHAV-HPITAVQLEWSLWARDIE-NEIVPLCRELGIGIVPYCPLGRGFF 219 (249)
Q Consensus 157 ir~iGvs~~~~~~l~~~~~~-~~~~~~q~~~n~~~~~~~-~~~~~~~~~~gi~v~a~spl~~G~l 219 (249)
++-.-+...+++.+++++.. .+..++..+.|+.-.... .++.+.|+++|+.++.=.+++.+..
T Consensus 130 ~~v~~vd~~d~~~l~~~i~~~tklV~le~p~NPtG~~~di~~I~~la~~~gi~lIvD~a~a~~~~ 194 (403)
T PRK07503 130 VTVRHVDLTDPAALKAAISDKTRMVYFETPANPNMRLVDIAAVAEIAHGAGAKVVVDNTYCTPYL 194 (403)
T ss_pred EEEEEeCCCCHHHHHHhcCccCcEEEEeCCCCCCCeeeCHHHHHHHHHHcCCEEEEECCCccccc
Confidence 33333433467788777643 445555556666544333 8899999999999998777765543
No 279
>COG0710 AroD 3-dehydroquinate dehydratase [Amino acid transport and metabolism]
Probab=33.70 E-value=2.9e+02 Score=23.17 Aligned_cols=88 Identities=10% Similarity=-0.013 Sum_probs=53.6
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCCCCcCCCc-hHHHHHHHHHcCCCC-CeEEEecccccccCCcccccCCCHHHHHHHHHH
Q 025707 40 SEEDGISIIKHAFSKGITFFDTADKYGPYT-NEILLGKALKELPRE-NIQVATKFGFVELGFTSVIVKGTPEYVRSCCEA 117 (249)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~g~-se~~lg~~l~~~~r~-~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~~~~ 117 (249)
+.+++.+.+..+.+.+.+.++---.|=..+ +.......+.+...+ .++++-+.-... + ....+.+.-.+-+..
T Consensus 12 ~~~~~~e~~~~~~~~~~Di~E~RvD~l~~~~~~~~~~~~~~e~~~~~~~IfT~R~~~EG---G--~~~~~~~~~i~ll~~ 86 (231)
T COG0710 12 DIAELKEQAEKSKELDADIVELRVDLLESNVEVLEVAKALREKDPDKPLIFTFRTVKEG---G--EFPGSEEEYIELLKK 86 (231)
T ss_pred CHHHHHHHHHHhhccCCCEEEEeechhcccchHHHHHHHHHHhccCCceEEEEeehhhc---C--CCCCCHHHHHHHHHH
Confidence 678888999999999988887765554211 233333344433333 466666532211 1 112456666677777
Q ss_pred HHHHcCCCceeEEEe
Q 025707 118 SLRRLDVEYIDLYYQ 132 (249)
Q Consensus 118 sL~~Lg~d~iDl~~l 132 (249)
..+.-+.||+|+=+.
T Consensus 87 la~~~~~d~iDiEl~ 101 (231)
T COG0710 87 LAELNGPDYIDIELS 101 (231)
T ss_pred HHhhcCCCEEEEEcc
Confidence 777777899997443
No 280
>TIGR01404 FlhB_rel_III type III secretion protein, YscU/HrpY family. This model represents one of several families of proteins related to bacterial flagellar biosynthesis proteins and involved in bacterial type III protein secretion systems. This family is homologous to, but distinguished from, flagellar biosynthetic protein FlhB (TIGRFAMs model TIGR00328). This model may not identify all type III secretion system FlhB homologs.
Probab=33.66 E-value=12 Score=33.24 Aligned_cols=42 Identities=24% Similarity=0.358 Sum_probs=35.5
Q ss_pred hhHHHHHHHhCCcEEecccCcccccCCCCCCCCCCCCccccc
Q 025707 195 NEIVPLCRELGIGIVPYCPLGRGFFGGKAVVESVPLDSFLVC 236 (249)
Q Consensus 195 ~~~~~~~~~~gi~v~a~spl~~G~l~g~~~~~~~~~~~~~~~ 236 (249)
..+.+.|+++||+++-.-||+..+...-...+.+|++.|.+.
T Consensus 291 ~~Ir~iA~e~~VPiven~pLAR~Ly~~~evg~~IP~ely~aV 332 (342)
T TIGR01404 291 LAVRAYAEEAGIPVVRDIPLARQLYRTARVGQYIPEELFEAV 332 (342)
T ss_pred HHHHHHHHHcCCCEeeCHHHHHHHHHcCCCCCcCCHHHHHHH
Confidence 779999999999999999999999876666677887766554
No 281
>PRK15108 biotin synthase; Provisional
Probab=33.58 E-value=3.4e+02 Score=24.02 Aligned_cols=105 Identities=13% Similarity=0.186 Sum_probs=57.6
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCCCCc-CC-CchHHHHHHHHHcCCCCCeEEEecccccccCCcccccCCCHHHHHHHHH
Q 025707 39 LSEEDGISIIKHAFSKGITFFDTADKY-GP-YTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCE 116 (249)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~Dta~~Y-g~-g~se~~lg~~l~~~~r~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~~~ 116 (249)
.+.++..+..+.+.+.|++-|-..-.+ .. ...-+.+.+.++.+..-.+.++.-.+. .+.+.+
T Consensus 76 ls~eEI~~~a~~~~~~G~~~i~i~~~g~~p~~~~~e~i~~~i~~ik~~~i~v~~s~G~-----------ls~e~l----- 139 (345)
T PRK15108 76 MEVEQVLESARKAKAAGSTRFCMGAAWKNPHERDMPYLEQMVQGVKAMGLETCMTLGT-----------LSESQA----- 139 (345)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEecCCCCCcchHHHHHHHHHHHHhCCCEEEEeCCc-----------CCHHHH-----
Confidence 578999999999999999998443221 11 112244555555432222222221221 233322
Q ss_pred HHHHHcCCCceeEEEeecC------CCCCCHHHHHHHHHHHHHcCCeeE
Q 025707 117 ASLRRLDVEYIDLYYQHRV------DTSVPIEETIGEMKKLVEEGKIKY 159 (249)
Q Consensus 117 ~sL~~Lg~d~iDl~~lh~~------~~~~~~~~~~~~l~~l~~~G~ir~ 159 (249)
+-|+..|+|++.+-+=-.| -.....++.++.++.+++.|.--.
T Consensus 140 ~~LkeAGld~~n~~leT~p~~f~~I~~~~~~~~rl~~i~~a~~~G~~v~ 188 (345)
T PRK15108 140 QRLANAGLDYYNHNLDTSPEFYGNIITTRTYQERLDTLEKVRDAGIKVC 188 (345)
T ss_pred HHHHHcCCCEEeeccccChHhcCCCCCCCCHHHHHHHHHHHHHcCCcee
Confidence 3355677776543221111 112457889999999999986443
No 282
>PF03851 UvdE: UV-endonuclease UvdE; InterPro: IPR004601 Schizosaccharomyces pombe ultraviolet damage endonuclease (UVDE or Uve1p) performs the initial step in an alternative excision repair pathway for UV-induced DNA damage. This DNA repair pathway was originally thought to be specific for UV damage, however Uve1p also recognises UV-induced bipyrimidine photoadducts and other non-UV-induced DNA adducts []. The Deinococcus radiodurans UVSE protein has also shown to be a UV DNA damage endonuclease that catalyzes repair of UV-induced DNA damage by a similar mechanism [].; GO: 0004519 endonuclease activity, 0006289 nucleotide-excision repair, 0009411 response to UV; PDB: 3BZG_A 3BZJ_A 3C0L_A 3C0S_A 3C0Q_A.
Probab=33.52 E-value=3.1e+02 Score=23.58 Aligned_cols=102 Identities=15% Similarity=0.146 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHcCCCeEeCCC----CcCC----CchHHHHHHHHHc----CCCCCeEEEecccccccCCcccccCCCH
Q 025707 41 EEDGISIIKHAFSKGITFFDTAD----KYGP----YTNEILLGKALKE----LPRENIQVATKFGFVELGFTSVIVKGTP 108 (249)
Q Consensus 41 ~~~~~~~l~~A~~~Gi~~~Dta~----~Yg~----g~se~~lg~~l~~----~~r~~~~I~tK~~~~~~~~~~~~~~~s~ 108 (249)
-+...++|+...+.||++|=.+. .+.. ..-+..+...|+. .....+-++..-+.... .-+.++
T Consensus 44 l~~l~~~L~~n~~~~I~~yRisS~liP~ashp~~~~~~~~~~~~~l~~iG~~~~~~~iRls~HP~qf~v-----LnSp~~ 118 (275)
T PF03851_consen 44 LEDLLRILEYNIAHGIRFYRISSDLIPLASHPEVGWDWEEEFAEELAEIGDLAKENGIRLSMHPDQFTV-----LNSPRE 118 (275)
T ss_dssp HHHHHHHHHHHHHTT--EEE--TTSSTTTTSTT--S-HHHHHHHHHHHHHHHHHHTT-EEEE---TT-------TT-SSH
T ss_pred HHHHHHHHHHHHHcCCCEEecCcccCCCCCCcccccchHHHHHHHHHHHHHHHHHcCCeEEecCCccee-----CCCCCH
Confidence 46677888888999999996553 1111 1133334444433 23456666666543220 112346
Q ss_pred HHHHHHHHH------HHHHcCCCce--eEEEeecCCCCCCHHHHHHH
Q 025707 109 EYVRSCCEA------SLRRLDVEYI--DLYYQHRVDTSVPIEETIGE 147 (249)
Q Consensus 109 ~~i~~~~~~------sL~~Lg~d~i--Dl~~lh~~~~~~~~~~~~~~ 147 (249)
+.+++++.+ .|+.||++.- ..+.+|--....+.+++++.
T Consensus 119 ~Vv~~si~~L~yH~~~Ld~mg~~~~~~~~i~IH~GG~YgdK~~al~R 165 (275)
T PF03851_consen 119 EVVENSIRDLEYHARLLDLMGLDDSPDHKINIHVGGVYGDKEAALER 165 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-TT----EEEEE----SS-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCcccccEEEEeeCCCCCChHHHHHH
Confidence 777777654 5888999887 88999987555555444433
No 283
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=33.50 E-value=4.5e+02 Score=25.36 Aligned_cols=148 Identities=14% Similarity=0.088 Sum_probs=75.5
Q ss_pred CCHHHHHHHHHHHHHcCCCeE---eCCCCcCCCchHHHHHHHHHc-CCCCCeEEEecccccccCCcccccCCCHHHHHHH
Q 025707 39 LSEEDGISIIKHAFSKGITFF---DTADKYGPYTNEILLGKALKE-LPRENIQVATKFGFVELGFTSVIVKGTPEYVRSC 114 (249)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~---Dta~~Yg~g~se~~lg~~l~~-~~r~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~ 114 (249)
++++-....++.|.++|+..| |..+.-. ..+..+ ++.++ ...-+..|+.-.. +.++++.+.+-
T Consensus 93 ypd~vv~~~v~~A~~~Gvd~irif~~lnd~~--n~~~~i-~~ak~~G~~v~~~i~~t~~----------p~~t~~~~~~~ 159 (592)
T PRK09282 93 YPDDVVEKFVEKAAENGIDIFRIFDALNDVR--NMEVAI-KAAKKAGAHVQGTISYTTS----------PVHTIEKYVEL 159 (592)
T ss_pred ccchhhHHHHHHHHHCCCCEEEEEEecChHH--HHHHHH-HHHHHcCCEEEEEEEeccC----------CCCCHHHHHHH
Confidence 466777788889999987665 4333221 122222 22221 1111222322111 12567777666
Q ss_pred HHHHHHHcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCCHHHHH-----HHhhcCCceEEeeecCcc
Q 025707 115 CEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIR-----RAHAVHPITAVQLEWSLW 189 (249)
Q Consensus 115 ~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~-----~~~~~~~~~~~q~~~n~~ 189 (249)
+++. ..+|. |.+.+........-.++.+.+..++++=. .-||+=.|+...+. .+++ .+.+.++..++.+
T Consensus 160 a~~l-~~~Ga---d~I~i~Dt~G~~~P~~~~~lv~~lk~~~~-~pi~~H~Hnt~Gla~An~laAv~-aGad~vD~ai~g~ 233 (592)
T PRK09282 160 AKEL-EEMGC---DSICIKDMAGLLTPYAAYELVKALKEEVD-LPVQLHSHCTSGLAPMTYLKAVE-AGVDIIDTAISPL 233 (592)
T ss_pred HHHH-HHcCC---CEEEECCcCCCcCHHHHHHHHHHHHHhCC-CeEEEEEcCCCCcHHHHHHHHHH-hCCCEEEeecccc
Confidence 6665 56776 44566555554555566666666665522 35777666542221 2222 3566666666655
Q ss_pred ccch---h-hhHHHHHHHhC
Q 025707 190 ARDI---E-NEIVPLCRELG 205 (249)
Q Consensus 190 ~~~~---~-~~~~~~~~~~g 205 (249)
-... . +.++..++..|
T Consensus 234 g~~agn~~~e~vv~~L~~~g 253 (592)
T PRK09282 234 AFGTSQPPTESMVAALKGTP 253 (592)
T ss_pred CCCcCCHhHHHHHHHHHhCC
Confidence 4321 1 55565555544
No 284
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=33.39 E-value=3.5e+02 Score=24.07 Aligned_cols=133 Identities=20% Similarity=0.263 Sum_probs=76.3
Q ss_pred CCHHHHHHHHHHHHHcC-CCeEeCCCCcCCCchHHHHHHHHHcCC-CCCeEEEecccccccCCcccccCCCHHHHHHHHH
Q 025707 39 LSEEDGISIIKHAFSKG-ITFFDTADKYGPYTNEILLGKALKELP-RENIQVATKFGFVELGFTSVIVKGTPEYVRSCCE 116 (249)
Q Consensus 39 ~~~~~~~~~l~~A~~~G-i~~~Dta~~Yg~g~se~~lg~~l~~~~-r~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~~~ 116 (249)
.+.++..+.-+.|-+.| .++...|..++.+..-..+-++++.+. --.+-++--+| ..+.+..
T Consensus 84 ~~~eeIle~Ak~ak~~Ga~r~c~~aagr~~~~~~~~i~~~v~~Vk~~~~le~c~slG-----------~l~~eq~----- 147 (335)
T COG0502 84 MEVEEILEAAKKAKAAGATRFCMGAAGRGPGRDMEEVVEAIKAVKEELGLEVCASLG-----------MLTEEQA----- 147 (335)
T ss_pred CCHHHHHHHHHHHHHcCCceEEEEEeccCCCccHHHHHHHHHHHHHhcCcHHhhccC-----------CCCHHHH-----
Confidence 46788888888888999 888888888863345555555665421 11122222222 1233333
Q ss_pred HHHHHcCCCceeEEEeecCCCC----------CCHHHHHHHHHHHHHcCCeeE----EEcCCCCHHHHHHHhhcCCce-E
Q 025707 117 ASLRRLDVEYIDLYYQHRVDTS----------VPIEETIGEMKKLVEEGKIKY----IGLSEASPDTIRRAHAVHPIT-A 181 (249)
Q Consensus 117 ~sL~~Lg~d~iDl~~lh~~~~~----------~~~~~~~~~l~~l~~~G~ir~----iGvs~~~~~~l~~~~~~~~~~-~ 181 (249)
+-|+.-|+|+ +-|+.+.+ ..+++-++.++.+++.|.=-. +|+.+-..+.+..+....... .
T Consensus 148 ~~L~~aGvd~----ynhNLeTs~~~y~~I~tt~t~edR~~tl~~vk~~Gi~vcsGgI~GlGEs~eDri~~l~~L~~l~~p 223 (335)
T COG0502 148 EKLADAGVDR----YNHNLETSPEFYENIITTRTYEDRLNTLENVREAGIEVCSGGIVGLGETVEDRAELLLELANLPTP 223 (335)
T ss_pred HHHHHcChhh----eecccccCHHHHcccCCCCCHHHHHHHHHHHHHcCCccccceEecCCCCHHHHHHHHHHHHhCCCC
Confidence 3466777765 44655442 457889999999999976433 355555445454443331111 4
Q ss_pred EeeecCcccc
Q 025707 182 VQLEWSLWAR 191 (249)
Q Consensus 182 ~q~~~n~~~~ 191 (249)
-.+++|.+.+
T Consensus 224 dsVPIn~l~P 233 (335)
T COG0502 224 DSVPINFLNP 233 (335)
T ss_pred CeeeeeeecC
Confidence 4455555443
No 285
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=33.35 E-value=3.1e+02 Score=23.51 Aligned_cols=152 Identities=14% Similarity=0.154 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHHcCCCeEeCCCCcCCCchHHHHHHHHHcCCCC-CeEEEecccccccCCcccccCCCHHHHHHHHHHHH
Q 025707 41 EEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELPRE-NIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASL 119 (249)
Q Consensus 41 ~~~~~~~l~~A~~~Gi~~~Dta~~Yg~g~se~~lg~~l~~~~r~-~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL 119 (249)
.+...+.++.-.+.+..|+..+..=|....+..+.-+-. +.++ .+-....+.- .+.+...++..+...
T Consensus 15 ~~~~~~~~~~l~~~~p~fvsvT~~~~~~~~~~t~~~~~~-l~~~~g~~~i~Hltc---------r~~~~~~l~~~L~~~- 83 (281)
T TIGR00677 15 VQNLYERMDRMVASGPLFIDITWGAGGTTAELTLTIASR-AQNVVGVETCMHLTC---------TNMPIEMIDDALERA- 83 (281)
T ss_pred HHHHHHHHHHHhhCCCCEEEeccCCCCcchhhHHHHHHH-HHHhcCCCeeEEecc---------CCCCHHHHHHHHHHH-
Confidence 455566666667889999988765433334444433332 2211 2222222211 134556666666555
Q ss_pred HHcCCCceeEEEeecCC---------CCCCHHHHHHHHHHHHHc-CCeeEEEcCCCC--------HH-HHHHHhhc--C-
Q 025707 120 RRLDVEYIDLYYQHRVD---------TSVPIEETIGEMKKLVEE-GKIKYIGLSEAS--------PD-TIRRAHAV--H- 177 (249)
Q Consensus 120 ~~Lg~d~iDl~~lh~~~---------~~~~~~~~~~~l~~l~~~-G~ir~iGvs~~~--------~~-~l~~~~~~--~- 177 (249)
..+|++. ++.+-... .....+-+.+.++.+++. |..-.||+..+. .+ .+..+.+. .
T Consensus 84 ~~~Gi~n--iLal~GD~p~~~~~~~~~~~~f~~a~~Li~~i~~~~~~~f~igva~~Pe~Hp~~~~~~~d~~~L~~Ki~aG 161 (281)
T TIGR00677 84 YSNGIQN--ILALRGDPPHIGDDWTEVEGGFQYAVDLVKYIRSKYGDYFCIGVAGYPEGHPEAESVELDLKYLKEKVDAG 161 (281)
T ss_pred HHCCCCE--EEEECCCCCCCCCCCCCCCCCCcCHHHHHHHHHHhCCCceEEEEEECCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 7778654 34443211 111223355555666554 443578887663 22 23344332 2
Q ss_pred -CceEEeeecCccccchhhhHHHHHHHhCCcE
Q 025707 178 -PITAVQLEWSLWARDIENEIVPLCRELGIGI 208 (249)
Q Consensus 178 -~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v 208 (249)
.+-+-|.-|+. ..-.+.++.|++.|+.+
T Consensus 162 A~f~iTQ~~Fd~---~~~~~f~~~~~~~gi~~ 190 (281)
T TIGR00677 162 ADFIITQLFYDV---DNFLKFVNDCRAIGIDC 190 (281)
T ss_pred CCEeeccceecH---HHHHHHHHHHHHcCCCC
Confidence 34445554443 22367888999986543
No 286
>PRK15108 biotin synthase; Provisional
Probab=33.31 E-value=3.4e+02 Score=23.99 Aligned_cols=107 Identities=9% Similarity=-0.011 Sum_probs=60.5
Q ss_pred CCHHHHHHHHHHHHHHcCCCceeEEEeecCCC-CCCHHHHHHHHHHHHHcCCeeEEEcCC--CCHHHHHHHhhcCCceEE
Q 025707 106 GTPEYVRSCCEASLRRLDVEYIDLYYQHRVDT-SVPIEETIGEMKKLVEEGKIKYIGLSE--ASPDTIRRAHAVHPITAV 182 (249)
Q Consensus 106 ~s~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~-~~~~~~~~~~l~~l~~~G~ir~iGvs~--~~~~~l~~~~~~~~~~~~ 182 (249)
.+++.|.+.+.. ...+|++++-+ ...+.++ ...++.+.+.++.+++.|. .+.+|+ .+.+.+.++.+. +++.+
T Consensus 76 ls~eEI~~~a~~-~~~~G~~~i~i-~~~g~~p~~~~~e~i~~~i~~ik~~~i--~v~~s~G~ls~e~l~~LkeA-Gld~~ 150 (345)
T PRK15108 76 MEVEQVLESARK-AKAAGSTRFCM-GAAWKNPHERDMPYLEQMVQGVKAMGL--ETCMTLGTLSESQAQRLANA-GLDYY 150 (345)
T ss_pred CCHHHHHHHHHH-HHHcCCCEEEE-EecCCCCCcchHHHHHHHHHHHHhCCC--EEEEeCCcCCHHHHHHHHHc-CCCEE
Confidence 678888888765 56789988732 3332222 3446677777778887765 243444 566777777554 22211
Q ss_pred ee-------ecCccc-c-c--hhhhHHHHHHHhCCcEEecccCccc
Q 025707 183 QL-------EWSLWA-R-D--IENEIVPLCRELGIGIVPYCPLGRG 217 (249)
Q Consensus 183 q~-------~~n~~~-~-~--~~~~~~~~~~~~gi~v~a~spl~~G 217 (249)
-+ -|.-+. . . ..-+.++.+++.|+.+-+-..++-|
T Consensus 151 n~~leT~p~~f~~I~~~~~~~~rl~~i~~a~~~G~~v~sg~i~Glg 196 (345)
T PRK15108 151 NHNLDTSPEFYGNIITTRTYQERLDTLEKVRDAGIKVCSGGIVGLG 196 (345)
T ss_pred eeccccChHhcCCCCCCCCHHHHHHHHHHHHHcCCceeeEEEEeCC
Confidence 11 111111 1 1 1256778888888866555555544
No 287
>PRK06298 type III secretion system protein; Validated
Probab=33.26 E-value=13 Score=33.21 Aligned_cols=42 Identities=14% Similarity=0.337 Sum_probs=34.6
Q ss_pred hhHHHHHHHhCCcEEecccCcccccCCCCCCCCCCCCccccc
Q 025707 195 NEIVPLCRELGIGIVPYCPLGRGFFGGKAVVESVPLDSFLVC 236 (249)
Q Consensus 195 ~~~~~~~~~~gi~v~a~spl~~G~l~g~~~~~~~~~~~~~~~ 236 (249)
..+.+.|+++||+++..-||++.+...-...+.+|++.|.+.
T Consensus 293 ~~Ir~iA~e~~VPiven~pLARaLy~~~evg~~IP~ely~AV 334 (356)
T PRK06298 293 KRIIAEAEKYGVPIMRNVPLAHQLLDEGKELKFIPESTYEAI 334 (356)
T ss_pred HHHHHHHHHcCCCEEeCHHHHHHHHHcCCCCCcCCHHHHHHH
Confidence 779999999999999999999999865556667777666543
No 288
>PLN02509 cystathionine beta-lyase
Probab=33.21 E-value=2.4e+02 Score=26.26 Aligned_cols=57 Identities=7% Similarity=0.022 Sum_probs=41.1
Q ss_pred CCCHHHHHHHhhc-CCceEEeeecCccccchh-hhHHHHHHHhCCcEEecccCcccccC
Q 025707 164 EASPDTIRRAHAV-HPITAVQLEWSLWARDIE-NEIVPLCRELGIGIVPYCPLGRGFFG 220 (249)
Q Consensus 164 ~~~~~~l~~~~~~-~~~~~~q~~~n~~~~~~~-~~~~~~~~~~gi~v~a~spl~~G~l~ 220 (249)
..+.+.+++++.. .+..++..+.|+.-.-.. ..+.+.|+++|+.++.=..++.|.+.
T Consensus 204 ~~d~e~l~~ai~~~TklV~lesPsNPtG~i~Dl~~I~~lAk~~g~~lIVD~A~a~~~~~ 262 (464)
T PLN02509 204 TTNLDEVAAAIGPQTKLVWLESPTNPRQQISDIRKIAEMAHAQGALVLVDNSIMSPVLS 262 (464)
T ss_pred CCCHHHHHHhCCcCCeEEEEECCCCCCCCHHHHHHHHHHHHHcCCEEEEECCccccccC
Confidence 3456777776643 445666777887654333 88999999999999988888777653
No 289
>KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=33.12 E-value=3.9e+02 Score=24.50 Aligned_cols=55 Identities=11% Similarity=0.089 Sum_probs=43.5
Q ss_pred HHHHHHhhc-CCceEEeeecCccccchh-hhHHHHHHHhCCcEEecccCcccccCCC
Q 025707 168 DTIRRAHAV-HPITAVQLEWSLWARDIE-NEIVPLCRELGIGIVPYCPLGRGFFGGK 222 (249)
Q Consensus 168 ~~l~~~~~~-~~~~~~q~~~n~~~~~~~-~~~~~~~~~~gi~v~a~spl~~G~l~g~ 222 (249)
+.++++.+. ....+.+.+-|++..-.+ ..+.+.|+++|+.|+.=.+|+.+++...
T Consensus 153 ~~~~~~i~~~t~~V~~ESPsNPll~v~DI~~l~~la~~~g~~vvVDnTf~~p~~~~p 209 (409)
T KOG0053|consen 153 KKILKAIKENTKAVFLESPSNPLLKVPDIEKLARLAHKYGFLVVVDNTFGSPYNQDP 209 (409)
T ss_pred HHHHHhhccCceEEEEECCCCCccccccHHHHHHHHhhCCCEEEEeCCcCcccccCh
Confidence 345555554 567788889999877655 8999999999999999999998866655
No 290
>PRK14340 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=32.97 E-value=3.9e+02 Score=24.56 Aligned_cols=121 Identities=13% Similarity=0.141 Sum_probs=64.8
Q ss_pred CCHHHHHHHHHHHHHcCCCeE-----eCCCCcCCCchHHHHHHHHHcC----CCCCeEEEecccccccCCcccccCCCHH
Q 025707 39 LSEEDGISIIKHAFSKGITFF-----DTADKYGPYTNEILLGKALKEL----PRENIQVATKFGFVELGFTSVIVKGTPE 109 (249)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~-----Dta~~Yg~g~se~~lg~~l~~~----~r~~~~I~tK~~~~~~~~~~~~~~~s~~ 109 (249)
-+.++..+-++...+.|++-| |+. .|++......+.+.|+.+ +..++.+.+ ..|.
T Consensus 178 r~~e~Vv~Ei~~l~~~G~~ei~l~~~~~~-~y~d~~~~~~l~~Ll~~l~~~~~~~rir~~~---------------~~p~ 241 (445)
T PRK14340 178 HPFASVLDEVRALAEAGYREITLLGQNVN-SYSDPEAGADFAGLLDAVSRAAPEMRIRFTT---------------SHPK 241 (445)
T ss_pred CCHHHHHHHHHHHHHCCCeEEEEeecccc-hhhccCCCchHHHHHHHHhhcCCCcEEEEcc---------------CChh
Confidence 467888888888889998777 333 455311111233333331 111222222 1234
Q ss_pred HHHHHHHHHHHHc--CCCceeEEEeecCCC-------CCCHHHHHHHHHHHHHc--CCee----EEEcCCCCHHHHHHHh
Q 025707 110 YVRSCCEASLRRL--DVEYIDLYYQHRVDT-------SVPIEETIGEMKKLVEE--GKIK----YIGLSEASPDTIRRAH 174 (249)
Q Consensus 110 ~i~~~~~~sL~~L--g~d~iDl~~lh~~~~-------~~~~~~~~~~l~~l~~~--G~ir----~iGvs~~~~~~l~~~~ 174 (249)
.+.+.+-+.+.+. |+.++++=+=|..+. ....++..++++.+++. |..- -+|+-+-+.+.+++.+
T Consensus 242 ~l~~ell~~~~~~~~g~~~l~iglQSgsd~vLk~m~R~~t~~~~~~~v~~lr~~~pgi~i~td~IvGfPgET~edf~~tl 321 (445)
T PRK14340 242 DISESLVRTIAARPNICNHIHLPVQSGSSRMLRRMNRGHTIEEYLEKIALIRSAIPGVTLSTDLIAGFCGETEEDHRATL 321 (445)
T ss_pred hcCHHHHHHHHhCCCCCCeEEECCCcCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEeccEEEECCCCCHHHHHHHH
Confidence 4444455555554 677777766555433 23456777777777776 5522 2466666666655544
Q ss_pred h
Q 025707 175 A 175 (249)
Q Consensus 175 ~ 175 (249)
+
T Consensus 322 ~ 322 (445)
T PRK14340 322 S 322 (445)
T ss_pred H
Confidence 3
No 291
>PRK02901 O-succinylbenzoate synthase; Provisional
Probab=32.90 E-value=3.4e+02 Score=23.86 Aligned_cols=71 Identities=11% Similarity=0.116 Sum_probs=47.6
Q ss_pred HHHHHHHHHcCCee-EEEcCCCCHHHHHHHhhcCCceEEeeecCccccchhhhHHHHHHHhCCcEEecccCccc
Q 025707 145 IGEMKKLVEEGKIK-YIGLSEASPDTIRRAHAVHPITAVQLEWSLWARDIENEIVPLCRELGIGIVPYCPLGRG 217 (249)
Q Consensus 145 ~~~l~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~spl~~G 217 (249)
++.+.+++++-.|. +.|=|-++...+.+++....++++|+..+.+-. -.++++.|+++|+.++..|.+..+
T Consensus 173 ~~~la~Lr~~~~vPIA~DEs~~~~~d~~~l~~~~a~dvi~ik~~~~GG--it~~lkiA~~~gi~v~v~s~~es~ 244 (327)
T PRK02901 173 VEELAELRRRVGVPIAADESIRRAEDPLRVARAGAADVAVLKVAPLGG--VRAALDIAEQIGLPVVVSSALDTS 244 (327)
T ss_pred HHHHHHHHHhCCCCEEeCCCCCCHHHHHHHHHcCCCCEEEeCcchhCC--HHHHHHHHHHcCCcEEEeCCcccH
Confidence 44555555442222 334455677777777777778888887766543 256888999999999987776554
No 292
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=32.85 E-value=1.2e+02 Score=25.58 Aligned_cols=86 Identities=12% Similarity=0.021 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHcCCCeEeCCCCcCCCchHHHHHHHHHcCCCCCeEEEecccccccCCcccccCCCHHHHHHHHHHHHHH
Q 025707 42 EDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRR 121 (249)
Q Consensus 42 ~~~~~~l~~A~~~Gi~~~Dta~~Yg~g~se~~lg~~l~~~~r~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~~ 121 (249)
....+.++.|-+.|++.++.|..+-. -++...-+.++......+.+.+-++...+ ......+++.+.+.+++-|+.
T Consensus 84 ~~~~~yl~~~k~lGf~~IEiSdGti~-l~~~~r~~~I~~~~~~Gf~v~~EvG~K~~---~~~~~~~~~~~i~~~~~dLeA 159 (244)
T PF02679_consen 84 GKFDEYLEECKELGFDAIEISDGTID-LPEEERLRLIRKAKEEGFKVLSEVGKKDP---ESDFSLDPEELIEQAKRDLEA 159 (244)
T ss_dssp T-HHHHHHHHHHCT-SEEEE--SSS----HHHHHHHHHHHCCTTSEEEEEES-SSH---HHHTT--CCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHcCCCEEEecCCcee-CCHHHHHHHHHHHHHCCCEEeecccCCCc---hhcccCCHHHHHHHHHHHHHC
Confidence 45667888888999999999987753 46666667777656666888888885432 222234567777778877776
Q ss_pred cCCCceeEEEeecC
Q 025707 122 LDVEYIDLYYQHRV 135 (249)
Q Consensus 122 Lg~d~iDl~~lh~~ 135 (249)
|. |.+++...
T Consensus 160 -GA---~~ViiEar 169 (244)
T PF02679_consen 160 -GA---DKVIIEAR 169 (244)
T ss_dssp -TE---CEEEE--T
T ss_pred -CC---CEEEEeee
Confidence 65 55777554
No 293
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=32.80 E-value=3.5e+02 Score=23.90 Aligned_cols=138 Identities=16% Similarity=0.137 Sum_probs=71.9
Q ss_pred CCCHHHHHHHH-------HHHHHcCCCeEeCCC--C-----------------cCCCchH---HHHH---HHHHcCCCCC
Q 025707 38 PLSEEDGISII-------KHAFSKGITFFDTAD--K-----------------YGPYTNE---ILLG---KALKELPREN 85 (249)
Q Consensus 38 ~~~~~~~~~~l-------~~A~~~Gi~~~Dta~--~-----------------Yg~g~se---~~lg---~~l~~~~r~~ 85 (249)
.++.++..+++ +.|.++|+..+|--- . || |.-| +.+- +++++.-..+
T Consensus 130 ~mt~~eI~~ii~~f~~AA~ra~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yG-GslenR~r~~~eiv~~ir~~vg~~ 208 (343)
T cd04734 130 AMEEEDIEEIIAAFADAARRCQAGGLDGVELQAAHGHLIDQFLSPLTNRRTDEYG-GSLENRMRFLLEVLAAVRAAVGPD 208 (343)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhhCCCcCCCCCcCC-CCHHHHhHHHHHHHHHHHHHcCCC
Confidence 35666665555 456789999997422 2 43 2222 1222 2223233466
Q ss_pred eEEEecccccccCCcccccCCCHHHHHHHHHHHHHHcC-CCceeEEEeecCCCC-------------CCHHHHHHHHHHH
Q 025707 86 IQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLD-VEYIDLYYQHRVDTS-------------VPIEETIGEMKKL 151 (249)
Q Consensus 86 ~~I~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~~Lg-~d~iDl~~lh~~~~~-------------~~~~~~~~~l~~l 151 (249)
+.|..|++...... ...+.+... .+-+.|+..| +|++++ |..... ..-.-.++...+.
T Consensus 209 ~~v~iRl~~~~~~~----~G~~~~e~~-~~~~~l~~~G~vd~i~v---s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 280 (343)
T cd04734 209 FIVGIRISGDEDTE----GGLSPDEAL-EIAARLAAEGLIDYVNV---SAGSYYTLLGLAHVVPSMGMPPGPFLPLAARI 280 (343)
T ss_pred CeEEEEeehhhccC----CCCCHHHHH-HHHHHHHhcCCCCEEEe---CCCCCCcccccccccCCCCCCcchhHHHHHHH
Confidence 78888887543110 012343332 3445556666 555554 321110 0011135555666
Q ss_pred HHcCCeeEEEcCC-CCHHHHHHHhhcCCceEEee
Q 025707 152 VEEGKIKYIGLSE-ASPDTIRRAHAVHPITAVQL 184 (249)
Q Consensus 152 ~~~G~ir~iGvs~-~~~~~l~~~~~~~~~~~~q~ 184 (249)
++.=.+--+++.+ .+++..+++++....+.+.+
T Consensus 281 k~~~~ipvi~~G~i~~~~~~~~~l~~~~~D~V~~ 314 (343)
T cd04734 281 KQAVDLPVFHAGRIRDPAEAEQALAAGHADMVGM 314 (343)
T ss_pred HHHcCCCEEeeCCCCCHHHHHHHHHcCCCCeeee
Confidence 6554566677765 47788888887766666655
No 294
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=32.67 E-value=3.3e+02 Score=23.65 Aligned_cols=130 Identities=15% Similarity=0.185 Sum_probs=72.7
Q ss_pred CCCHHHHHHHHHHHHHcCCCeEeCCCCcCC----CchHHHHHHHHHcCC-CCCeEEEecccccccCCcccccCCCHHHHH
Q 025707 38 PLSEEDGISIIKHAFSKGITFFDTADKYGP----YTNEILLGKALKELP-RENIQVATKFGFVELGFTSVIVKGTPEYVR 112 (249)
Q Consensus 38 ~~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~----g~se~~lg~~l~~~~-r~~~~I~tK~~~~~~~~~~~~~~~s~~~i~ 112 (249)
.++.++..++++.+.+.|++.|.-+. |. .+-.+++.. ++..+ -.++.|+|-... +.
T Consensus 42 ~ls~eei~~~i~~~~~~gv~~V~ltG--GEPll~~~l~~li~~-i~~~~gi~~v~itTNG~l----------------l~ 102 (334)
T TIGR02666 42 LLTFEEIERLVRAFVGLGVRKVRLTG--GEPLLRKDLVELVAR-LAALPGIEDIALTTNGLL----------------LA 102 (334)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEC--ccccccCCHHHHHHH-HHhcCCCCeEEEEeCchh----------------HH
Confidence 36789999999999999998886542 21 112233332 33222 126677674321 11
Q ss_pred HHHHHHHHHcCCCceeEEEeecCCC---------CCCHHHHHHHHHHHHHcCC--e--eEEEcCCCCHHHHHHHhhc---
Q 025707 113 SCCEASLRRLDVEYIDLYYQHRVDT---------SVPIEETIGEMKKLVEEGK--I--KYIGLSEASPDTIRRAHAV--- 176 (249)
Q Consensus 113 ~~~~~sL~~Lg~d~iDl~~lh~~~~---------~~~~~~~~~~l~~l~~~G~--i--r~iGvs~~~~~~l~~~~~~--- 176 (249)
+ .-+.|.+.|++++- +.++..++ ...++++++.++.+++.|. | ..+-+.+.+.+++.++++.
T Consensus 103 ~-~~~~L~~~gl~~v~-ISld~~~~~~~~~i~~~~~~~~~vl~~i~~l~~~G~~~v~in~vv~~g~n~~ei~~l~~~~~~ 180 (334)
T TIGR02666 103 R-HAKDLKEAGLKRVN-VSLDSLDPERFAKITRRGGRLEQVLAGIDAALAAGLEPVKLNTVVMRGVNDDEIVDLAEFAKE 180 (334)
T ss_pred H-HHHHHHHcCCCeEE-EecccCCHHHhheeCCCCCCHHHHHHHHHHHHHcCCCcEEEEEEEeCCCCHHHHHHHHHHHHh
Confidence 1 23446677776654 33454432 1257889999999999885 2 2233445666666555443
Q ss_pred CCceEEeeecCc
Q 025707 177 HPITAVQLEWSL 188 (249)
Q Consensus 177 ~~~~~~q~~~n~ 188 (249)
.++.+.-++|.+
T Consensus 181 ~gv~~~~ie~mp 192 (334)
T TIGR02666 181 RGVTLRFIELMP 192 (334)
T ss_pred cCCeEEEEeccC
Confidence 344433334443
No 295
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=32.31 E-value=1e+02 Score=24.35 Aligned_cols=64 Identities=22% Similarity=0.195 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHcCCCce----eEEEeecCCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCCHHHHHHHhhc
Q 025707 111 VRSCCEASLRRLDVEYI----DLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAV 176 (249)
Q Consensus 111 i~~~~~~sL~~Lg~d~i----Dl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~ 176 (249)
.++.++..++++|++.- +.+. ..........++.+.|++|++.| ++-.-+||.+...+...++.
T Consensus 61 ~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~L~~L~~~g-~~~~i~Sn~~~~~~~~~l~~ 128 (198)
T TIGR01428 61 TREALRYLLGRLGLEDDESAADRLA-EAYLRLPPHPDVPAGLRALKERG-YRLAILSNGSPAMLKSLVKH 128 (198)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHH-HHHhcCCCCCCHHHHHHHHHHCC-CeEEEEeCCCHHHHHHHHHH
Confidence 35566777777776421 1111 11111223457788899999987 45566788877766665554
No 296
>PRK10551 phage resistance protein; Provisional
Probab=32.30 E-value=2.7e+02 Score=26.14 Aligned_cols=109 Identities=11% Similarity=0.164 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHcCCCceeEEEeecCCCC-CCHHHHHHHHHHHHHcCCeeEEEcCCCCH--HHHHHHhhcCCceEEeeecC
Q 025707 111 VRSCCEASLRRLDVEYIDLYYQHRVDTS-VPIEETIGEMKKLVEEGKIKYIGLSEASP--DTIRRAHAVHPITAVQLEWS 187 (249)
Q Consensus 111 i~~~~~~sL~~Lg~d~iDl~~lh~~~~~-~~~~~~~~~l~~l~~~G~ir~iGvs~~~~--~~l~~~~~~~~~~~~q~~~n 187 (249)
+.+.+.+.++.++.+..- +.+.-.+.. ....+..+.++.|++.|. .|.+.++.. ..+..+ ...+++.+=++-+
T Consensus 366 f~~~l~~~l~~~~~~~~~-LvlEItE~~~~~~~~~~~~l~~Lr~~G~--~ialDDFGtg~ssl~~L-~~l~vD~lKID~~ 441 (518)
T PRK10551 366 FKADVQRLLASLPADHFQ-IVLEITERDMVQEEEATKLFAWLHSQGI--EIAIDDFGTGHSALIYL-ERFTLDYLKIDRG 441 (518)
T ss_pred HHHHHHHHHHhCCCCcce-EEEEEechHhcCCHHHHHHHHHHHHCCC--EEEEECCCCCchhHHHH-HhCCCCEEEECHH
Confidence 445566666666654322 222222111 122446678899999998 666666543 223222 2335666555543
Q ss_pred cccc--------chhhhHHHHHHHhCCcEEeccc---------------CcccccCCCC
Q 025707 188 LWAR--------DIENEIVPLCRELGIGIVPYCP---------------LGRGFFGGKA 223 (249)
Q Consensus 188 ~~~~--------~~~~~~~~~~~~~gi~v~a~sp---------------l~~G~l~g~~ 223 (249)
.... .....+++.|++.|+.+++-.. +.+|.+.+++
T Consensus 442 fv~~i~~~~~~~~il~~ii~la~~lgi~vVAEGVEt~~q~~~L~~~Gv~~~QGy~f~kP 500 (518)
T PRK10551 442 FIQAIGTETVTSPVLDAVLTLAKRLNMLTVAEGVETPEQARWLRERGVNFLQGYWISRP 500 (518)
T ss_pred HHhhhccChHHHHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHcCCCEEEcCccCCC
Confidence 3221 1126699999999999997654 6678887774
No 297
>PRK10508 hypothetical protein; Provisional
Probab=32.08 E-value=79 Score=27.92 Aligned_cols=42 Identities=14% Similarity=0.135 Sum_probs=29.2
Q ss_pred CCHHHHHHHHHHHHHHcCCCceeEEEeecCCCCCCHHHHHHHHHHHH
Q 025707 106 GTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLV 152 (249)
Q Consensus 106 ~s~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~ 152 (249)
.+|+.+.+.+++..+++|+|++ +++.+. .+.++.++.++-|.
T Consensus 286 Gtpe~V~~kl~~l~~~~g~del---~~~~~~--~~~e~~~~S~~lla 327 (333)
T PRK10508 286 GDKAKVRHGLQSILRETQADEI---MVNGQI--FDHQARLHSFELAM 327 (333)
T ss_pred eCHHHHHHHHHHHHHHHCcCEE---EEECCC--CCHHHHHHHHHHHH
Confidence 5899999999999999999987 333322 34555555555444
No 298
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=31.94 E-value=4.8e+02 Score=25.20 Aligned_cols=104 Identities=13% Similarity=0.134 Sum_probs=55.0
Q ss_pred CCCHHHHHHHHHHHHHcCCCeEeCC--------CCcCCCchHHHHHHHHHc-CCCCCeEEEec----ccccccCCccccc
Q 025707 38 PLSEEDGISIIKHAFSKGITFFDTA--------DKYGPYTNEILLGKALKE-LPRENIQVATK----FGFVELGFTSVIV 104 (249)
Q Consensus 38 ~~~~~~~~~~l~~A~~~Gi~~~Dta--------~~Yg~g~se~~lg~~l~~-~~r~~~~I~tK----~~~~~~~~~~~~~ 104 (249)
.++.++..++....-+.|+..+++- .-|- ++++...-+.+++ .++-.+..... +++..
T Consensus 23 r~~~~d~l~ia~~ld~~G~~siE~~GGatf~~~~~~~-~e~p~e~lr~l~~~~~~~~lqml~Rg~n~vg~~~-------- 93 (593)
T PRK14040 23 RLRLDDMLPIAAKLDKVGYWSLESWGGATFDACIRFL-GEDPWERLRELKKAMPNTPQQMLLRGQNLLGYRH-------- 93 (593)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEecCCcchhhhcccc-CCCHHHHHHHHHHhCCCCeEEEEecCcceecccc--------
Confidence 4577888888888889999999982 2222 2334333344443 55555544444 11111
Q ss_pred CCCHHHHHHHHHHHHHHcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCCe
Q 025707 105 KGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKI 157 (249)
Q Consensus 105 ~~s~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~i 157 (249)
+..+.++..++. ....|+|.+-++ +...+++....+++..++.|+.
T Consensus 94 -ypddvv~~~v~~-a~~~Gid~~rif-----d~lnd~~~~~~ai~~ak~~G~~ 139 (593)
T PRK14040 94 -YADDVVERFVER-AVKNGMDVFRVF-----DAMNDPRNLETALKAVRKVGAH 139 (593)
T ss_pred -CcHHHHHHHHHH-HHhcCCCEEEEe-----eeCCcHHHHHHHHHHHHHcCCe
Confidence 112233333333 334555555544 2223345555666666777764
No 299
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=31.86 E-value=3.6e+02 Score=23.78 Aligned_cols=94 Identities=12% Similarity=0.019 Sum_probs=46.9
Q ss_pred EEEecccccccCCcccccCCCHHHHHHHHHHHHHHcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCC
Q 025707 87 QVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEAS 166 (249)
Q Consensus 87 ~I~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~ 166 (249)
+|..|+.......+ .....+.+... .+-+.|+..|+|++++- |.......-.-.++..+++++.=.|--+++..++
T Consensus 220 ~v~vRis~~~~~~~-~~~~~~~ee~~-~~~~~l~~~g~d~i~vs--~g~~~~~~~~~~~~~~~~ik~~~~ipvi~~G~i~ 295 (338)
T cd02933 220 RVGIRLSPFGTFND-MGDSDPEATFS-YLAKELNKRGLAYLHLV--EPRVAGNPEDQPPDFLDFLRKAFKGPLIAAGGYD 295 (338)
T ss_pred ceEEEECccccCCC-CCCCCCHHHHH-HHHHHHHHcCCcEEEEe--cCCCCCcccccchHHHHHHHHHcCCCEEEECCCC
Confidence 47777764321100 00122333332 35555666677666652 2211111111234444455555456677777777
Q ss_pred HHHHHHHhhcCCceEEee
Q 025707 167 PDTIRRAHAVHPITAVQL 184 (249)
Q Consensus 167 ~~~l~~~~~~~~~~~~q~ 184 (249)
++..+++++....+.+.+
T Consensus 296 ~~~a~~~l~~g~~D~V~~ 313 (338)
T cd02933 296 AESAEAALADGKADLVAF 313 (338)
T ss_pred HHHHHHHHHcCCCCEEEe
Confidence 777777777766666655
No 300
>TIGR00035 asp_race aspartate racemase.
Probab=31.76 E-value=2.9e+02 Score=22.66 Aligned_cols=62 Identities=19% Similarity=0.129 Sum_probs=43.3
Q ss_pred CHHHHHHHHHHHHHHcCCCceeEEEeecCCCCC------------CHHHHHHHHHHHHHcCCeeEEEcCCCCHHH
Q 025707 107 TPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSV------------PIEETIGEMKKLVEEGKIKYIGLSEASPDT 169 (249)
Q Consensus 107 s~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~------------~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~ 169 (249)
+.+.+++=++..-.+.+.+|++.+.+++++-.. ....+.+.++.|.+.| +..|-++..+...
T Consensus 15 t~~~~~~i~~~~~a~~d~~~~~~i~~~~~~~~dr~~~~~~~~~~~~~~~l~~~~~~L~~~g-~d~iviaCNTah~ 88 (229)
T TIGR00035 15 TAELFRRINEKTKAKRDQEHPAEVLFNNPNIPDRTAYILGRGEDRPRPILIDIAVKLENAG-ADFIIMPCNTAHK 88 (229)
T ss_pred HHHHHHHHHHHhHHhcCCCCCceeeeeCCCHHHHHHHHhcCCcchHHHHHHHHHHHHHHcC-CCEEEECCccHHH
Confidence 445566666666678889999999999985421 1234566677776654 7899998877655
No 301
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=31.57 E-value=3.8e+02 Score=24.02 Aligned_cols=99 Identities=16% Similarity=0.083 Sum_probs=57.3
Q ss_pred CCCHHHHHHHHHHHHHHcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCC-eeEEEcCCCCHHHHHHHhhcCCceEEe
Q 025707 105 KGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGK-IKYIGLSEASPDTIRRAHAVHPITAVQ 183 (249)
Q Consensus 105 ~~s~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~-ir~iGvs~~~~~~l~~~~~~~~~~~~q 183 (249)
.++.+.. ..+-+.|.++|+++|++- .|.. .++-++.++.+.+.|. .+.++++-.....++.+.+. .++.+.
T Consensus 22 ~~s~e~k-~~ia~~L~~~GV~~IE~G---~p~~---~~~~~e~i~~i~~~~~~~~i~~~~r~~~~di~~a~~~-g~~~i~ 93 (378)
T PRK11858 22 VFTNEEK-LAIARMLDEIGVDQIEAG---FPAV---SEDEKEAIKAIAKLGLNASILALNRAVKSDIDASIDC-GVDAVH 93 (378)
T ss_pred CCCHHHH-HHHHHHHHHhCCCEEEEe---CCCc---ChHHHHHHHHHHhcCCCeEEEEEcccCHHHHHHHHhC-CcCEEE
Confidence 3455544 445566999999999975 2322 1223455555655543 45555655557777777765 344444
Q ss_pred eecCcccc--------c------hhhhHHHHHHHhCCcEEec
Q 025707 184 LEWSLWAR--------D------IENEIVPLCRELGIGIVPY 211 (249)
Q Consensus 184 ~~~n~~~~--------~------~~~~~~~~~~~~gi~v~a~ 211 (249)
+....-+. . ...+.+++++++|..|...
T Consensus 94 i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~ 135 (378)
T PRK11858 94 IFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFS 135 (378)
T ss_pred EEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 43322111 0 1155788999999887654
No 302
>KOG3086 consensus Predicted dioxygenase [General function prediction only]
Probab=31.54 E-value=77 Score=26.84 Aligned_cols=58 Identities=19% Similarity=0.210 Sum_probs=36.5
Q ss_pred chHHHHHHHHHc---CCCCCeEEEecccccccCCcccccCCCHHHHHHHHHHHHHHcCCCce
Q 025707 69 TNEILLGKALKE---LPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLDVEYI 127 (249)
Q Consensus 69 ~se~~lg~~l~~---~~r~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~~Lg~d~i 127 (249)
..|...|+.|.+ .|++-++|++-+.....-......+.+--.|.++++ .|.+.|.+-|
T Consensus 162 ~~e~~~g~lls~Yi~Dp~NlFvvSSDFCHWG~RF~yt~Yd~s~~~I~~sIe-~lDk~gM~ii 222 (296)
T KOG3086|consen 162 SVEQCYGKLLSKYIKDPSNLFVVSSDFCHWGRRFSYTYYDHSQGPIYESIE-NLDKQGMKII 222 (296)
T ss_pred HHHHHHHHHHHHHhcCccceEEEeccccccccccccccccCCCchHHHHHH-HHHHhhhhhh
Confidence 578888888877 577888888888765432222334455556777765 3555565443
No 303
>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....
Probab=31.49 E-value=3.2e+02 Score=23.65 Aligned_cols=85 Identities=14% Similarity=0.014 Sum_probs=47.5
Q ss_pred CceeEEEeecCCCCCCHHHHHHHHHHHHHcCCeeEEEcC-----CCCHHHHHHHhhcC-------CceEEeeecCccccc
Q 025707 125 EYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLS-----EASPDTIRRAHAVH-------PITAVQLEWSLWARD 192 (249)
Q Consensus 125 d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs-----~~~~~~l~~~~~~~-------~~~~~q~~~n~~~~~ 192 (249)
+.-|.+++..|.... ..+.++.+ ...+..+-+. ..+++.+++.++.. .+.++..++|+.-..
T Consensus 91 ~~~~~vlv~~P~y~~----~~~~~~~~--g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~~~~p~nPtG~~ 164 (363)
T PF00155_consen 91 NPGDTVLVPDPCYPS----YIEAARLL--GAEVIPVPLDSENDFHLDPEALEEALDELPSKGPRPKAVLICNPNNPTGSV 164 (363)
T ss_dssp STTSEEEEEESSSTH----HHHHHHHT--TSEEEEEEEEETTTTEETHHHHHHHHHTSHTTTETEEEEEEESSBTTTTBB
T ss_pred cccccceecCCcccc----cccccccc--Cceeeeccccccccccccccccccccccccccccccceeeecccccccccc
Confidence 344668887764421 22222211 2234444433 56778888877662 233444455554322
Q ss_pred ----hhhhHHHHHHHhCCcEEecccCc
Q 025707 193 ----IENEIVPLCRELGIGIVPYCPLG 215 (249)
Q Consensus 193 ----~~~~~~~~~~~~gi~v~a~spl~ 215 (249)
...+++++|+++|+.++.=....
T Consensus 165 ~~~~~l~~l~~~~~~~~~~ii~De~y~ 191 (363)
T PF00155_consen 165 LSLEELRELAELAREYNIIIIVDEAYS 191 (363)
T ss_dssp --HHHHHHHHHHHHHTTSEEEEEETTT
T ss_pred cccccccchhhhhcccccceeeeecee
Confidence 22778888999999999644443
No 304
>PRK08249 cystathionine gamma-synthase; Provisional
Probab=31.47 E-value=3.1e+02 Score=24.75 Aligned_cols=57 Identities=7% Similarity=0.063 Sum_probs=39.9
Q ss_pred cCCCCHHHHHHHhhc-CCceEEeeecCccccchh-hhHHHHHHHhCCcEEecccCcccc
Q 025707 162 LSEASPDTIRRAHAV-HPITAVQLEWSLWARDIE-NEIVPLCRELGIGIVPYCPLGRGF 218 (249)
Q Consensus 162 vs~~~~~~l~~~~~~-~~~~~~q~~~n~~~~~~~-~~~~~~~~~~gi~v~a~spl~~G~ 218 (249)
+...+++.+++++.. .++.++..+.|+.-.-.. ..+.+.|+++|+.++.=..++.+.
T Consensus 134 vd~~d~e~l~~~i~~~tklV~ie~p~NPtg~v~dl~~I~~la~~~gi~livD~t~a~~~ 192 (398)
T PRK08249 134 CETGDHEQIEAEIAKGCDLLYLETPTNPTLKIVDIERLAAAAKKVGALVVVDNTFATPI 192 (398)
T ss_pred cCCCCHHHHHHhcCCCCeEEEEECCCCCCCccCCHHHHHHHHHHcCCEEEEECCcCccc
Confidence 444577888887653 456666667777544323 779999999999999777766544
No 305
>TIGR01118 lacA galactose-6-phosphate isomerase, LacA subunit. This family contains members from low GC gram-positive bacteria. Galactose-6-phosphate isomerase is involved in lactose catabolism by the tagatose-6-phosphate pathway.
Probab=31.35 E-value=2.4e+02 Score=21.63 Aligned_cols=96 Identities=9% Similarity=0.057 Sum_probs=68.1
Q ss_pred CCHHHHHHHHHHHHHHcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCCe-eEEEcCCCCHHHHHHHhhcCCceEEee
Q 025707 106 GTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKI-KYIGLSEASPDTIRRAHAVHPITAVQL 184 (249)
Q Consensus 106 ~s~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~i-r~iGvs~~~~~~l~~~~~~~~~~~~q~ 184 (249)
+.--.+++.+.+-|+..|-+-+|+= ++++.+..+....+.+.+.+|.. +.|-+|....-.-..+.+...+.+.++
T Consensus 9 h~G~~lK~~i~~~L~~~G~eV~D~G----~~~~~dYpd~a~~va~~V~~~e~~~GIliCGtGiG~siaANK~~GIRAA~~ 84 (141)
T TIGR01118 9 LAGKRLKDVIKNFLVDNGFEVIDVT----EGDGQDFVDVTLAVASEVQKDEQNLGIVIDAYGAGSFMVATKIKGMIAAEV 84 (141)
T ss_pred cchHHHHHHHHHHHHHCCCEEEEcC----CCCCCCcHHHHHHHHHHHHcCCCceEEEEcCCCHhHhhhhhcCCCeEEEEE
Confidence 4456788999999999998888864 24456777888888888888887 888889888766555556566666655
Q ss_pred ecCccccchhhhHHHHHHHh-CCcEEeccc
Q 025707 185 EWSLWARDIENEIVPLCREL-GIGIVPYCP 213 (249)
Q Consensus 185 ~~n~~~~~~~~~~~~~~~~~-gi~v~a~sp 213 (249)
. +....+.+++| +..|++.+.
T Consensus 85 ~--------d~~~A~~ar~hNnaNVL~lG~ 106 (141)
T TIGR01118 85 S--------DERSAYMTRGHNNARMITVGA 106 (141)
T ss_pred C--------CHHHHHHHHHHcCCcEEEECc
Confidence 2 23345556655 667766543
No 306
>PRK13109 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=31.31 E-value=14 Score=33.00 Aligned_cols=42 Identities=21% Similarity=0.381 Sum_probs=34.9
Q ss_pred hhHHHHHHHhCCcEEecccCcccccCCCCCCCCCCCCccccc
Q 025707 195 NEIVPLCRELGIGIVPYCPLGRGFFGGKAVVESVPLDSFLVC 236 (249)
Q Consensus 195 ~~~~~~~~~~gi~v~a~spl~~G~l~g~~~~~~~~~~~~~~~ 236 (249)
..+.+.|+++||+++-.-||++.+...-...+.+|++.|.+.
T Consensus 301 ~~Ir~~A~e~~VPiven~pLARaLy~~~evg~~IP~ely~AV 342 (358)
T PRK13109 301 LKIREIAEENGIPVIEDKPLARSLYDAVQVDQVIPAEFYRPV 342 (358)
T ss_pred HHHHHHHHHcCCCEEeCHHHHHHHHHhCCCCCcCCHHHHHHH
Confidence 779999999999999999999999866656667777666543
No 307
>PTZ00081 enolase; Provisional
Probab=31.08 E-value=4.3e+02 Score=24.42 Aligned_cols=97 Identities=15% Similarity=0.097 Sum_probs=65.6
Q ss_pred CCHHHHHHHHHHHHHHcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcC--CeeEEEc--CCCCHHHHHHHhhcCCceE
Q 025707 106 GTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEG--KIKYIGL--SEASPDTIRRAHAVHPITA 181 (249)
Q Consensus 106 ~s~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G--~ir~iGv--s~~~~~~l~~~~~~~~~~~ 181 (249)
.+++.+.+-+.+.++.++ ++++..|-... -|+.+.+|.++- .+.-+|= +..++..+.++++....++
T Consensus 281 ~s~~eli~~~~~~l~~y~-----I~~IEDPl~~~----D~eg~~~Lt~~lg~~i~IvgDE~~~tn~~~l~~~I~~~aad~ 351 (439)
T PTZ00081 281 LTGEELVELYLDLVKKYP-----IVSIEDPFDQD----DWEAYAKLTAAIGQKVQIVGDDLLVTNPTRIKKAIEKKACNA 351 (439)
T ss_pred cCHHHHHHHHHHHHhcCC-----cEEEEcCCCcc----cHHHHHHHHHhhCCCceEEcCCcccCCHHHHHHHHHhCCCCE
Confidence 466666666666666654 56777664433 355566666553 5555543 3467899999999888888
Q ss_pred EeeecCcccc-chhhhHHHHHHHhCCcEEec
Q 025707 182 VQLEWSLWAR-DIENEIVPLCRELGIGIVPY 211 (249)
Q Consensus 182 ~q~~~n~~~~-~~~~~~~~~~~~~gi~v~a~ 211 (249)
+|+..|-+-. ....++++.|+++|+.++..
T Consensus 352 i~iKvnqiGGITe~l~~a~lA~~~Gi~~iis 382 (439)
T PTZ00081 352 LLLKVNQIGTVTEAIEAAKLAQKNGWGVMVS 382 (439)
T ss_pred EEeccccccCHHHHHHHHHHHHHcCCcEEEe
Confidence 8888775432 11277999999999998763
No 308
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=30.87 E-value=2.8e+02 Score=28.14 Aligned_cols=69 Identities=16% Similarity=0.078 Sum_probs=53.9
Q ss_pred CCHHHHHHHHHHHHHHcCC--------------------------CceeEEEeecCCCCCC---HHHHHHHHHHHHHcCC
Q 025707 106 GTPEYVRSCCEASLRRLDV--------------------------EYIDLYYQHRVDTSVP---IEETIGEMKKLVEEGK 156 (249)
Q Consensus 106 ~s~~~i~~~~~~sL~~Lg~--------------------------d~iDl~~lh~~~~~~~---~~~~~~~l~~l~~~G~ 156 (249)
..+..+.+.++..|+.+|. ....++++..|....+ ...+|....++++.|+
T Consensus 670 ~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~ 749 (885)
T KOG0059|consen 670 LPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGK 749 (885)
T ss_pred CChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCC
Confidence 3456778888888887763 3456777777766544 3569999999999999
Q ss_pred eeEEEcCCCCHHHHHHHhhc
Q 025707 157 IKYIGLSEASPDTIRRAHAV 176 (249)
Q Consensus 157 ir~iGvs~~~~~~l~~~~~~ 176 (249)
+|=+.+|+.++.+.+...
T Consensus 750 --aiiLTSHsMeE~EaLCtR 767 (885)
T KOG0059|consen 750 --AIILTSHSMEEAEALCTR 767 (885)
T ss_pred --EEEEEcCCHHHHHHHhhh
Confidence 999999999999988765
No 309
>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.
Probab=30.83 E-value=2.6e+02 Score=24.97 Aligned_cols=54 Identities=9% Similarity=0.020 Sum_probs=36.0
Q ss_pred CCHHHHHHHhhc-CCceEEeeecCccccch-hhhHHHHHHHhCCcEEecccCcccc
Q 025707 165 ASPDTIRRAHAV-HPITAVQLEWSLWARDI-ENEIVPLCRELGIGIVPYCPLGRGF 218 (249)
Q Consensus 165 ~~~~~l~~~~~~-~~~~~~q~~~n~~~~~~-~~~~~~~~~~~gi~v~a~spl~~G~ 218 (249)
.+++.+++++.. .+..+++.+.|+.-... .+++.+.|+++|+.++.=..++.+.
T Consensus 127 ~d~~~l~~~i~~~tklV~le~p~np~g~~~dl~~I~~la~~~gi~livD~a~~~~~ 182 (380)
T TIGR01325 127 TDLNAWEAAVKPNTKLVFVETPSNPLGELVDIAALAELAHAIGALLVVDNVFATPV 182 (380)
T ss_pred CCHHHHHHhcCCCceEEEEECCCCCCCeeeCHHHHHHHHHHcCCEEEEECCCcccc
Confidence 356777766543 44556666667653322 3889999999999999766665443
No 310
>PF07994 NAD_binding_5: Myo-inositol-1-phosphate synthase; InterPro: IPR002587 1L-myo-Inositol-1-phosphate synthase (5.5.1.4 from EC) catalyzes the conversion of D-glucose 6-phosphate to 1L-myo-inositol-1-phosphate, the first committed step in the production of all inositol-containing compounds, including phospholipids, either directly or by salvage. The enzyme exists in a cytoplasmic form in a wide range of plants, animals, and fungi. It has also been detected in several bacteria and a chloroplast form is observed in alga and higher plants. Inositol phosphates play an important role in signal transduction. In Saccharomyces cerevisiae (Baker's yeast), the transcriptional regulation of the INO1 gene has been studied in detail [] and its expression is sensitive to the availability of phospholipid precursors as well as growth phase. The regulation of the structural gene encoding 1L-myo-inositol-1-phosphate synthase has also been analyzed at the transcriptional level in the aquatic angiosperm, Spirodela polyrrhiza (Giant duckweed) and the halophyte, Mesembryanthemum crystallinum (Common ice plant) [].; GO: 0004512 inositol-3-phosphate synthase activity, 0006021 inositol biosynthetic process, 0008654 phospholipid biosynthetic process; PDB: 1GR0_A 1P1K_B 1LA2_B 1RM0_B 1P1I_B 1JKF_A 1P1F_A 1P1J_B 1JKI_B 1P1H_A ....
Probab=30.19 E-value=2.9e+02 Score=24.02 Aligned_cols=95 Identities=15% Similarity=0.135 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHcCCCceeEEEeecCCCC----CCHHHHHHHHHHHHHcCCeeEEEcCCCCHHHHHHHhhc-CCceEE
Q 025707 108 PEYVRSCCEASLRRLDVEYIDLYYQHRVDTS----VPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAV-HPITAV 182 (249)
Q Consensus 108 ~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~----~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~-~~~~~~ 182 (249)
.+.+++.+.+.+++.|+|++=++.+-.-... ......+++|++..+++.- ..+++.+-..... .+..++
T Consensus 131 ~e~~~~DI~~f~~~~~~d~vVvvn~asTE~~~~~~~~~~~t~~~l~~al~~~~~------~~~aS~~YA~AAl~~g~~fv 204 (295)
T PF07994_consen 131 VEQIREDIRDFKKENGLDRVVVVNVASTERYIPVIPGVHDTLEALEKALDENDP------EISASMLYAYAALEAGVPFV 204 (295)
T ss_dssp HHHHHHHHHHHHHHTT-SCEEEEE-SSCC-S---CCCCCSSHHHHHHHHHTT-T------THHHHHHHHHHHHHTTEEEE
T ss_pred HHHHHHHHHHHHHHhCCCcEEEEECCCCCCCCCCCccccCCHHHHHHHhhcCCC------cCChHHHHHHHHHHCCCCeE
Confidence 5678999999999999997666655443331 1233568888888776552 2233332222111 333333
Q ss_pred eeecCccccchhhhHHHHHHHhCCcEEe
Q 025707 183 QLEWSLWARDIENEIVPLCRELGIGIVP 210 (249)
Q Consensus 183 q~~~n~~~~~~~~~~~~~~~~~gi~v~a 210 (249)
.. .+-.......+.+.++++|+.+.+
T Consensus 205 N~--tP~~~a~~P~l~ela~~~gvpi~G 230 (295)
T PF07994_consen 205 NG--TPSNIADDPALVELAEEKGVPIAG 230 (295)
T ss_dssp E---SSSTTTTSHHHHHHHHHHTEEEEE
T ss_pred ec--cCccccCCHHHHHHHHHcCCCeec
Confidence 22 222111126789999999998875
No 311
>PRK12613 galactose-6-phosphate isomerase subunit LacA; Provisional
Probab=30.17 E-value=2.5e+02 Score=21.51 Aligned_cols=95 Identities=11% Similarity=0.079 Sum_probs=68.4
Q ss_pred CCHHHHHHHHHHHHHHcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCCe-eEEEcCCCCHHHHHHHhhcCCceEEee
Q 025707 106 GTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKI-KYIGLSEASPDTIRRAHAVHPITAVQL 184 (249)
Q Consensus 106 ~s~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~i-r~iGvs~~~~~~l~~~~~~~~~~~~q~ 184 (249)
+.--.+++.+.+-|+..|-+.+|+=- .+.+..+....+.+.+.+|.. +.|-+|....-.-..+.+...+.+.++
T Consensus 9 haG~~lK~~l~~~L~~~g~eV~D~G~-----~~~dypd~a~~va~~V~~~e~~~GIliCGtGiG~siaANKv~GIRaA~~ 83 (141)
T PRK12613 9 AHGNALKELIKSFLQEEGYDIIDVTD-----INSDFIDNTLAVAKAVNEAEGRLGIMVDAYGAGPFMVATKLKGMVAAEV 83 (141)
T ss_pred cchHHHHHHHHHHHHHCCCEEEEcCC-----CCCChHHHHHHHHHHHHcCCCceEEEEcCCCHhHhhhhhcCCCeEEEEE
Confidence 44567899999999999988888742 236677888888888888887 889899888766555656666766665
Q ss_pred ecCccccchhhhHHHHHHHh-CCcEEeccc
Q 025707 185 EWSLWARDIENEIVPLCREL-GIGIVPYCP 213 (249)
Q Consensus 185 ~~n~~~~~~~~~~~~~~~~~-gi~v~a~sp 213 (249)
. +......+++| +..|++.+.
T Consensus 84 ~--------d~~~A~~ar~hNnaNVl~lG~ 105 (141)
T PRK12613 84 S--------DERSAYMTRGHNNARMITMGA 105 (141)
T ss_pred C--------CHHHHHHHHHHcCCcEEEECc
Confidence 2 23345556655 777777643
No 312
>PRK02227 hypothetical protein; Provisional
Probab=30.14 E-value=3.4e+02 Score=22.89 Aligned_cols=153 Identities=16% Similarity=0.183 Sum_probs=88.2
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCCC-CcCC--CchHHHHHHHHHcCCCCCeEEEecccccccCCcccccCCCHHHHHHHHH
Q 025707 40 SEEDGISIIKHAFSKGITFFDTAD-KYGP--YTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCE 116 (249)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~Dta~-~Yg~--g~se~~lg~~l~~~~r~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~~~ 116 (249)
+.+|+ ..|++.|..+||.-+ .-|. .....++.+.... -+...-||..++-.. ..+..+..++.
T Consensus 9 ~~eEA----~~Al~~GaDiIDvK~P~~GaLGA~~p~vir~Iv~~-~~~~~pvSAtiGD~p---------~~p~~~~~aa~ 74 (238)
T PRK02227 9 NLEEA----LEALAGGADIIDVKNPKEGSLGANFPWVIREIVAA-VPGRKPVSATIGDVP---------YKPGTISLAAL 74 (238)
T ss_pred CHHHH----HHHHhcCCCEEEccCCCCCCCCCCCHHHHHHHHHH-hCCCCCceeeccCCC---------CCchHHHHHHH
Confidence 45555 457788999999853 3331 2355555555543 233345666665322 33444444443
Q ss_pred HHHHHcCCCceeEEEeecCCCCCC---HHHHHHHHHHHHHcCCeeEEEcCCC------CHHHHHHHhhcCCceEEeeecC
Q 025707 117 ASLRRLDVEYIDLYYQHRVDTSVP---IEETIGEMKKLVEEGKIKYIGLSEA------SPDTIRRAHAVHPITAVQLEWS 187 (249)
Q Consensus 117 ~sL~~Lg~d~iDl~~lh~~~~~~~---~~~~~~~l~~l~~~G~ir~iGvs~~------~~~~l~~~~~~~~~~~~q~~~n 187 (249)
..-..|+||+=+-+....+.... +..++.++..+....++-.++++.+ ++..+-.......++.++++--
T Consensus 75 -~~a~~GvDyVKvGl~~~~~~~~~~~~~~~v~~a~~~~~~~~~vVav~yaD~~r~~~~~~~~l~~~a~~aGf~g~MlDTa 153 (238)
T PRK02227 75 -GAAATGADYVKVGLYGGKTAEEAVEVMKAVVRAVKDLDPGKIVVAAGYADAHRVGSVSPLSLPAIAADAGFDGAMLDTA 153 (238)
T ss_pred -HHHhhCCCEEEEcCCCCCcHHHHHHHHHHHHHhhhhcCCCCeEEEEEecccccccCCChHHHHHHHHHcCCCEEEEecc
Confidence 23356888877766633222111 1223344445556778889999886 4556666666677888888632
Q ss_pred ------cccc---chhhhHHHHHHHhCCc
Q 025707 188 ------LWAR---DIENEIVPLCRELGIG 207 (249)
Q Consensus 188 ------~~~~---~~~~~~~~~~~~~gi~ 207 (249)
+++. ......++.|+++|+-
T Consensus 154 ~Kdg~~Lfd~l~~~~L~~Fv~~ar~~Gl~ 182 (238)
T PRK02227 154 IKDGKSLFDHMDEEELAEFVAEARSHGLM 182 (238)
T ss_pred cCCCcchHhhCCHHHHHHHHHHHHHcccH
Confidence 2222 2237788889998875
No 313
>PRK08508 biotin synthase; Provisional
Probab=30.01 E-value=3.5e+02 Score=23.05 Aligned_cols=68 Identities=13% Similarity=0.029 Sum_probs=35.5
Q ss_pred CCHHHHHHHHHHHHHHcCCCceeEEEee-cCCCCCCHHHHHHHHHHHHHcC-CeeEE-EcCCCCHHHHHHHhh
Q 025707 106 GTPEYVRSCCEASLRRLDVEYIDLYYQH-RVDTSVPIEETIGEMKKLVEEG-KIKYI-GLSEASPDTIRRAHA 175 (249)
Q Consensus 106 ~s~~~i~~~~~~sL~~Lg~d~iDl~~lh-~~~~~~~~~~~~~~l~~l~~~G-~ir~i-Gvs~~~~~~l~~~~~ 175 (249)
.+++.|.+.+++..+ .|...+-++.-- .++ ...++-+.+.++.+++++ .+.-. -....+.+.++++.+
T Consensus 40 ~s~eeI~~~a~~a~~-~g~~~~~lv~sg~~~~-~~~~e~~~ei~~~ik~~~p~l~i~~s~G~~~~e~l~~Lk~ 110 (279)
T PRK08508 40 KDIEQIVQEAKMAKA-NGALGFCLVTSGRGLD-DKKLEYVAEAAKAVKKEVPGLHLIACNGTASVEQLKELKK 110 (279)
T ss_pred CCHHHHHHHHHHHHH-CCCCEEEEEeccCCCC-cccHHHHHHHHHHHHhhCCCcEEEecCCCCCHHHHHHHHH
Confidence 567888777776544 466555443211 111 234566677777777765 23211 111224566666544
No 314
>PRK09454 ugpQ cytoplasmic glycerophosphodiester phosphodiesterase; Provisional
Probab=29.70 E-value=3.3e+02 Score=22.62 Aligned_cols=60 Identities=22% Similarity=0.262 Sum_probs=36.3
Q ss_pred cCCeeEEEcCCCCHHHHHHHhhcCC-c--eEE-------------ee---ecCccccchhhhHHHHHHHhCCcEEeccc
Q 025707 154 EGKIKYIGLSEASPDTIRRAHAVHP-I--TAV-------------QL---EWSLWARDIENEIVPLCRELGIGIVPYCP 213 (249)
Q Consensus 154 ~G~ir~iGvs~~~~~~l~~~~~~~~-~--~~~-------------q~---~~n~~~~~~~~~~~~~~~~~gi~v~a~sp 213 (249)
.+..+.+-+++|+++.+..+.+..+ + .+. +. .+++-......++++.++++|+.|.+|..
T Consensus 139 ~~~~~~v~v~SF~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~v~~WTv 217 (249)
T PRK09454 139 AGAAVPPLLSSFSEDALEAARQAAPELPRGLLLDEWPDDWLELTRRLGCVSLHLNHKLLDEARVAALKAAGLRILVYTV 217 (249)
T ss_pred cCCCCCEEEEeCCHHHHHHHHHhCCCCcEEEEeccccccHHHHHHhcCCeEEecccccCCHHHHHHHHHCCCEEEEEeC
Confidence 3444567789999988877765421 1 000 00 01111111237899999999999999964
No 315
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=29.70 E-value=4.3e+02 Score=24.00 Aligned_cols=105 Identities=16% Similarity=0.181 Sum_probs=57.9
Q ss_pred CCcCCCchHHHHHHHHHc----CCCCCeEEEecccccccCCcccccCCCHHHHHHHHHHHHHHcCC-----CceeEEEee
Q 025707 63 DKYGPYTNEILLGKALKE----LPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLDV-----EYIDLYYQH 133 (249)
Q Consensus 63 ~~Yg~g~se~~lg~~l~~----~~r~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~~Lg~-----d~iDl~~lh 133 (249)
-.|| .|+.|-+++++ .+.+=++|.|-.. ++-|-..++...+++.. ..+.++.++
T Consensus 61 ~V~G---g~~~L~~~i~~~~~~~~p~~I~v~~tC~--------------~~liGdDi~~v~~~~~~~~~~~~~~~vi~v~ 123 (428)
T cd01965 61 AVFG---GEDNLIEALKNLLSRYKPDVIGVLTTCL--------------TETIGDDVAGFIKEFRAEGPEPADFPVVYAS 123 (428)
T ss_pred eeEC---cHHHHHHHHHHHHHhcCCCEEEEECCcc--------------hhhcCCCHHHHHHHHHhhccCCCCCeEEEee
Confidence 3566 57777778876 2333355555432 23333444444455542 235577777
Q ss_pred cCCCCCC----HHHHHHHHHH-H------HHcCCeeEEEcCCC---CHHHHHHHhhcCCceEEee
Q 025707 134 RVDTSVP----IEETIGEMKK-L------VEEGKIKYIGLSEA---SPDTIRRAHAVHPITAVQL 184 (249)
Q Consensus 134 ~~~~~~~----~~~~~~~l~~-l------~~~G~ir~iGvs~~---~~~~l~~~~~~~~~~~~q~ 184 (249)
.|.-... .+.++++|-+ + ++.++|--||-++. +.+.+.++++..++.++.+
T Consensus 124 tpgf~g~~~~G~~~a~~al~~~~~~~~~~~~~~~VNlig~~~~~~~d~~el~~lL~~~Gl~v~~~ 188 (428)
T cd01965 124 TPSFKGSHETGYDNAVKAIIEQLAKPSEVKKNGKVNLLPGFPLTPGDVREIKRILEAFGLEPIIL 188 (428)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHHhcccCCCCCCeEEEECCCCCCccCHHHHHHHHHHcCCCEEEe
Confidence 7755432 2234444332 2 23467888876654 4578888888766666554
No 316
>PLN02438 inositol-3-phosphate synthase
Probab=29.54 E-value=3.2e+02 Score=25.72 Aligned_cols=49 Identities=8% Similarity=0.171 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHcCCCceeEEEeecCCCCC----CHHHHHHHHHHHHHcCC
Q 025707 108 PEYVRSCCEASLRRLDVEYIDLYYQHRVDTSV----PIEETIGEMKKLVEEGK 156 (249)
Q Consensus 108 ~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~----~~~~~~~~l~~l~~~G~ 156 (249)
-+.|++.+++-.++-|+|++=++...+-++.. ...+.++.|++..+++.
T Consensus 206 ve~ir~DIr~Fk~~n~ld~vVVlwtAsTEr~~~~~~~~~~t~~~l~~ai~~~~ 258 (510)
T PLN02438 206 MDQIRKDIREFKEKNKVDKVVVLWTANTERYSNVVVGLNDTMENLLASIEKDE 258 (510)
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEECCCCCCCCcCCCcccCCHHHHHHHHhcCC
Confidence 46788999999999999997777776654432 33467888888888765
No 317
>cd03328 MR_like_3 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 3. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=29.45 E-value=4e+02 Score=23.54 Aligned_cols=152 Identities=7% Similarity=0.001 Sum_probs=88.1
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCCCCcCCCchHHHHHHHHHcCCCCCeEEEecccccccCCcccccCCCHHHHHHHHHHHH
Q 025707 40 SEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASL 119 (249)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~g~se~~lg~~l~~~~r~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL 119 (249)
+.++..+..+.+.+.|++.|=.--. .+.......-+++++.-.+++-|.--... .++++...+-+ +.|
T Consensus 138 ~~e~~~~~a~~~~~~Gf~~~Kikvg-~~~~~d~~~v~~vRe~~G~~~~l~vDaN~----------~~~~~~A~~~~-~~l 205 (352)
T cd03328 138 DDDRLREQLSGWVAQGIPRVKMKIG-RDPRRDPDRVAAARRAIGPDAELFVDANG----------AYSRKQALALA-RAF 205 (352)
T ss_pred CHHHHHHHHHHHHHCCCCEEEeecC-CCHHHHHHHHHHHHHHcCCCCeEEEECCC----------CCCHHHHHHHH-HHH
Confidence 4566667777788899998864321 11112223334454422233333322111 23444432222 233
Q ss_pred HHcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHc--CCe-eEEEcCCCCHHHHHHHhhcCCceEEeeecCcccc-chhh
Q 025707 120 RRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEE--GKI-KYIGLSEASPDTIRRAHAVHPITAVQLEWSLWAR-DIEN 195 (249)
Q Consensus 120 ~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~--G~i-r~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~ 195 (249)
+.+ ++.++..|-. . +-++.+.+|+++ -.| -..|=|.++...+.++++..-++++|....-.-. ....
T Consensus 206 ~~~-----~~~~~EeP~~---~-~d~~~~~~l~~~~~~~iPIa~gE~~~~~~~~~~li~~~a~div~~d~~~~GGit~~~ 276 (352)
T cd03328 206 ADE-----GVTWFEEPVS---S-DDLAGLRLVRERGPAGMDIAAGEYAYTLAYFRRLLEAHAVDVLQADVTRCGGVTGFL 276 (352)
T ss_pred HHh-----CcchhhCCCC---h-hhHHHHHHHHhhCCCCCCEEecccccCHHHHHHHHHcCCCCEEecCccccCCHHHHH
Confidence 343 4455555432 2 236677777776 222 2557778899999999998889999998665432 1127
Q ss_pred hHHHHHHHhCCcEEecc
Q 025707 196 EIVPLCRELGIGIVPYC 212 (249)
Q Consensus 196 ~~~~~~~~~gi~v~a~s 212 (249)
++.+.|+.+|+.++...
T Consensus 277 ~ia~~A~a~gi~~~~h~ 293 (352)
T cd03328 277 QAAALAAAHHVDLSAHC 293 (352)
T ss_pred HHHHHHHHcCCeeccCc
Confidence 89999999999999764
No 318
>PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed
Probab=29.44 E-value=3e+02 Score=24.77 Aligned_cols=62 Identities=10% Similarity=0.021 Sum_probs=42.3
Q ss_pred eEEEcCCCCHHHHHHHhh-cCCceEEeeecCccccch-hhhHHHHHHHhCCcEEecccCccccc
Q 025707 158 KYIGLSEASPDTIRRAHA-VHPITAVQLEWSLWARDI-ENEIVPLCRELGIGIVPYCPLGRGFF 219 (249)
Q Consensus 158 r~iGvs~~~~~~l~~~~~-~~~~~~~q~~~n~~~~~~-~~~~~~~~~~~gi~v~a~spl~~G~l 219 (249)
...-+...+++.+++++. ..++.++..+.|+.-.-. ..++.+.|+++|+.++.=..++.|.+
T Consensus 131 ~v~~vd~~d~e~l~~ai~~~tklV~lesp~NptG~v~dl~~I~~la~~~gi~lvvD~a~a~~~~ 194 (398)
T PRK07504 131 ESTLVDGLDLDNWEKAVRPNTKVFFLESPTNPTLEVIDIAAVAKIANQAGAKLVVDNVFATPLF 194 (398)
T ss_pred EEEEECCCCHHHHHHhcCcCceEEEEECCCCCCcEecCHHHHHHHHHHcCCEEEEECCcccccc
Confidence 333334567788887764 345666777777654322 38899999999999998777765554
No 319
>PF00388 PI-PLC-X: Phosphatidylinositol-specific phospholipase C, X domain This entry is for the whole phospholipase C protein; InterPro: IPR000909 Phosphatidylinositol-specific phospholipase C (3.1.4.11 from EC), a eukaryotic intracellular enzyme, plays an important role in signal transduction processes []. It catalyzes the hydrolysis of 1-phosphatidyl-D-myo-inositol-3,4,5-triphosphate into the second messenger molecules diacylglycerol and inositol-1,4,5-triphosphate. This catalytic process is tightly regulated by reversible phosphorylation and binding of regulatory proteins [, , ]. In mammals, there are at least 6 different isoforms of PI-PLC, they differ in their domain structure, their regulation, and their tissue distribution. Lower eukaryotes also possess multiple isoforms of PI-PLC. All eukaryotic PI-PLCs contain two regions of homology, sometimes referred to as the 'X-box' and 'Y-box'. The order of these two regions is always the same (NH2-X-Y-COOH), but the spacing is variable. In most isoforms, the distance between these two regions is only 50-100 residues but in the gamma isoforms one PH domain, two SH2 domains, and one SH3 domain are inserted between the two PLC-specific domains. The two conserved regions have been shown to be important for the catalytic activity. By profile analysis, we could show that sequences with significant similarity to the X-box domain occur also in prokaryotic and trypanosome PI-specific phospholipases C. Apart from this region, the prokaryotic enzymes show no similarity to their eukaryotic counterparts.; GO: 0004629 phospholipase C activity, 0006629 lipid metabolic process, 0035556 intracellular signal transduction; PDB: 2FJU_B 2ZKM_X 3V18_A 3V1H_A 3V16_A 3QR1_D 3EA3_A 3EA1_A 2OR2_A 1T6M_B ....
Probab=29.42 E-value=38 Score=25.70 Aligned_cols=19 Identities=21% Similarity=0.317 Sum_probs=13.5
Q ss_pred HHHHHHHHcCCCeEeCCCC
Q 025707 46 SIIKHAFSKGITFFDTADK 64 (249)
Q Consensus 46 ~~l~~A~~~Gi~~~Dta~~ 64 (249)
..+...++.|||+||---.
T Consensus 30 ~~i~~QL~~GiR~lDlrv~ 48 (146)
T PF00388_consen 30 WSIREQLESGIRYLDLRVW 48 (146)
T ss_dssp HHHHHHHHTT--EEEEEEE
T ss_pred HhHHHHHhccCceEEEEEE
Confidence 5788999999999996433
No 320
>PF00762 Ferrochelatase: Ferrochelatase; InterPro: IPR001015 Synonym(s): Protohaem ferro-lyase, Iron chelatase, etc. Ferrochelatase catalyses the last step in haem biosynthesis: the chelation of a ferrous ion to proto-porphyrin IX, to form protohaem [, ]. In eukaryotic cells, it binds to the mitochondrial inner membrane with its active site on the matrix side of the membrane. The X-ray structure of Bacillus subtilis and human ferrochelatase have been solved [, ]. The human enzyme exists as a homodimer. Each subunit contains one [2Fe-2S] cluster. The monomer is folded into two similar domains, each with a four-stranded parallel beta-sheet flanked by an alpha-helix in a beta-alpha-beta motif that is reminiscent of the fold found in the periplasmic binding proteins. The topological similarity between the domains suggests that they have arisen from a gene duplication event. However, significant differences exist between the two domains, including an N-terminal section (residues 80-130) that forms part of the active site pocket, and a C-terminal extension (residues 390-423) that is involved in coordination of the [2Fe-2S] cluster and in stabilisation of the homodimer. Ferrochelatase seems to have a structurally conserved core region that is common to the enzyme from bacteria, plants and mammals. Porphyrin binds in the identified cleft; this cleft also includes the metal-binding site of the enzyme. It is likely that the structure of the cleft region will have different conformations upon substrate binding and release [].; GO: 0004325 ferrochelatase activity, 0006783 heme biosynthetic process; PDB: 2QD3_B 2HRE_C 3HCN_B 2PNJ_A 2QD1_C 1HRK_A 2QD4_B 3AQI_B 2HRC_B 3HCO_B ....
Probab=29.41 E-value=1.6e+02 Score=25.71 Aligned_cols=52 Identities=21% Similarity=0.291 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHcCCCceeEEEeecCCCCCCH-HHHHHHHHHHHHcCCeeEE
Q 025707 108 PEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPI-EETIGEMKKLVEEGKIKYI 160 (249)
Q Consensus 108 ~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~-~~~~~~l~~l~~~G~ir~i 160 (249)
.+.+++..+...++||.....+.+.-......-+ ..+-+.|++|.++| ++.|
T Consensus 206 ~~~~~~t~~~i~~~l~~~~~~~~fQS~~g~~~WL~P~~~~~l~~l~~~G-~~~V 258 (316)
T PF00762_consen 206 PAQCEETARLIAERLGLPEWRLAFQSRFGPGEWLGPSTEDVLEELAKEG-VKRV 258 (316)
T ss_dssp HHHHHHHHHHHHHHTTTSSEEEEEES-SSSS-BSSSBHHHHHHHHHHCT--SEE
T ss_pred HHHHHHHHHHHHHHcCCCceEEEEECCCCCCCCccccHHHHHHHHHhcC-CCeE
Confidence 5678888888899999877666555333331111 23777888999999 4554
No 321
>PF00101 RuBisCO_small: Ribulose bisphosphate carboxylase, small chain; InterPro: IPR000894 RuBisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) is a bifunctional enzyme that catalyses both the carboxylation and oxygenation of ribulose-1,5-bisphosphate (RuBP) [], thus fixing carbon dioxide as the first step of the Calvin cycle. RuBisCO is the major protein in the stroma of chloroplasts, and in higher plants exists as a complex of 8 large and 8 small subunits. The function of the small subunit is unknown []. While the large subunit is coded for by a single gene, the small subunit is coded for by several different genes, which are distributed in a tissue specific manner. They are transcriptionally regulated by light receptor phytochrome [], which results in RuBisCO being more abundant during the day when it is required. The RuBisCo small subunit consists of a central four-stranded beta-sheet, with two helices packed against it [].; PDB: 1BWV_W 1IWA_P 3AXM_X 1WDD_S 3AXK_T 1IR2_K 1RBL_N 1UZH_J 1RSC_P 1UW9_C ....
Probab=29.27 E-value=2.2e+02 Score=20.44 Aligned_cols=77 Identities=22% Similarity=0.175 Sum_probs=50.6
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCe-EeCCCCcCCCchHHHHHHHHHcCCCCCeEEEecccccccCCcccccCCCHHHHHHH
Q 025707 36 NSPLSEEDGISIIKHAFSKGITF-FDTADKYGPYTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSC 114 (249)
Q Consensus 36 ~~~~~~~~~~~~l~~A~~~Gi~~-~Dta~~Yg~g~se~~lg~~l~~~~r~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~ 114 (249)
-++.+.++..+-|+..+..|.+. ++.|..- ..|...+-.-|+... ...+++.+..+
T Consensus 8 lP~l~~~~i~~Qv~~ll~qG~~i~iE~ad~r---------------~~r~~~W~mW~~p~~--------~~~~~~~Vl~e 64 (99)
T PF00101_consen 8 LPPLTDEEIAKQVRYLLSQGWIIGIEHADPR---------------RFRTSYWQMWKLPMF--------GCTDPAQVLAE 64 (99)
T ss_dssp SS---HHHHHHHHHHHHHTT-EEEEEEESCG---------------GSTSSS-EEESSEBT--------TBSSHHHHHHH
T ss_pred CCCCCHHHHHHHHHhhhhcCceeeEEecCCC---------------CCCCCEeecCCCCCc--------CCCCHHHHHHH
Confidence 34456889999999999999876 5544322 133333333343322 24578999999
Q ss_pred HHHHHHHcCCCceeEEEeecC
Q 025707 115 CEASLRRLDVEYIDLYYQHRV 135 (249)
Q Consensus 115 ~~~sL~~Lg~d~iDl~~lh~~ 135 (249)
|+.+++.---+||=|+-+.+.
T Consensus 65 l~~c~~~~p~~yVRlig~D~~ 85 (99)
T PF00101_consen 65 LEACLAEHPGEYVRLIGFDNK 85 (99)
T ss_dssp HHHHHHHSTTSEEEEEEEETT
T ss_pred HHHHHHhCCCceEEEEEEcCc
Confidence 999999999999998877654
No 322
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=29.23 E-value=3.7e+02 Score=26.61 Aligned_cols=147 Identities=15% Similarity=0.099 Sum_probs=77.5
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCCCCcCCCchHHHHHHHHHcCCCCCeEEEecccccccCCcccccCCCHHHHHHHHHHHH
Q 025707 40 SEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASL 119 (249)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~g~se~~lg~~l~~~~r~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL 119 (249)
.-+.+.+++++|.|.|++.+- .|. |+--.. +....-|+-++..|...+... .= -...+-+..
T Consensus 41 RgEIaIRvFRa~tEL~~~tvA---iYs----eqD~~s-MHRqKADEaY~iGk~l~PV~A---------YL-~ideii~ia 102 (1176)
T KOG0369|consen 41 RGEIAIRVFRAATELSMRTVA---IYS----EQDRLS-MHRQKADEAYLIGKGLPPVGA---------YL-AIDEIISIA 102 (1176)
T ss_pred CCcchhHHHHHHhhhcceEEE---EEe----ccchhh-hhhhccccceecccCCCchhh---------hh-hHHHHHHHH
Confidence 568899999999999998774 674 222222 222467888888887433210 01 112222333
Q ss_pred HHcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCCHHHHHHHh--------hc-CCceEEeeecCccc
Q 025707 120 RRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAH--------AV-HPITAVQLEWSLWA 190 (249)
Q Consensus 120 ~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~--------~~-~~~~~~q~~~n~~~ 190 (249)
++-++ |.+ | |... -+.|--+..+...+. -|+.||=|. +.+..+= .. ..+-++---=.++.
T Consensus 103 k~~~v---dav--H-PGYG-FLSErsdFA~av~~A-Gi~fiGPsp---eVi~~mGDKv~AR~~Ai~agVpvVPGTpgPit 171 (1176)
T KOG0369|consen 103 KKHNV---DAV--H-PGYG-FLSERSDFAQAVQDA-GIRFIGPSP---EVIDSMGDKVAARAIAIEAGVPVVPGTPGPIT 171 (1176)
T ss_pred HHcCC---Cee--c-CCcc-ccccchHHHHHHHhc-CceEeCCCH---HHHHHhhhHHHHHHHHHHcCCCccCCCCCCcc
Confidence 44444 332 2 1111 122222333344444 578999764 3332221 11 11111111111111
Q ss_pred cchhhhHHHHHHHhCCcEEecccCccc
Q 025707 191 RDIENEIVPLCRELGIGIVPYCPLGRG 217 (249)
Q Consensus 191 ~~~~~~~~~~~~~~gi~v~a~spl~~G 217 (249)
. .++.++||++.|.+||-...+++|
T Consensus 172 t--~~EA~eF~k~yG~PvI~KAAyGGG 196 (1176)
T KOG0369|consen 172 T--VEEALEFVKEYGLPVIIKAAYGGG 196 (1176)
T ss_pred c--HHHHHHHHHhcCCcEEEeecccCC
Confidence 1 378999999999999999999877
No 323
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=29.16 E-value=68 Score=17.65 Aligned_cols=16 Identities=31% Similarity=0.549 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHcCCC
Q 025707 42 EDGISIIKHAFSKGIT 57 (249)
Q Consensus 42 ~~~~~~l~~A~~~Gi~ 57 (249)
++-..++..|.+.|+.
T Consensus 3 ~EW~~Li~eA~~~Gls 18 (30)
T PF08671_consen 3 EEWVELIKEAKESGLS 18 (30)
T ss_dssp HHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHHcCCC
Confidence 5678899999999984
No 324
>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein. This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases.
Probab=29.14 E-value=4.4e+02 Score=24.94 Aligned_cols=83 Identities=12% Similarity=-0.014 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHcCCCeEeCCCCcCCC--chHHHHHHHHHc---CCCCCeEEEecccccccCCcccccCCCHHHHHHHHH
Q 025707 42 EDGISIIKHAFSKGITFFDTADKYGPY--TNEILLGKALKE---LPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCE 116 (249)
Q Consensus 42 ~~~~~~l~~A~~~Gi~~~Dta~~Yg~g--~se~~lg~~l~~---~~r~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~~~ 116 (249)
+.+.+.++.|.+.|....-.+.++.++ .....+-+.++. ..-+.+.|+.-++. ..|..+.+.++
T Consensus 122 ~~~~~~v~~ak~~g~~V~~~~e~f~D~~r~~~~~l~~~~~~a~~aGad~i~i~DTvG~-----------~~P~~v~~li~ 190 (526)
T TIGR00977 122 AMIYDTVAYLKRQGDEVIYDAEHFFDGYKANPEYALATLATAQQAGADWLVLCDTNGG-----------TLPHEISEITT 190 (526)
T ss_pred HHHHHHHHHHHHcCCeEEEEeeeeeecccCCHHHHHHHHHHHHhCCCCeEEEecCCCC-----------cCHHHHHHHHH
Confidence 334556888889998753222221111 233444444443 56778888877764 35889999999
Q ss_pred HHHHHcCCCceeEEEeecCCCC
Q 025707 117 ASLRRLDVEYIDLYYQHRVDTS 138 (249)
Q Consensus 117 ~sL~~Lg~d~iDl~~lh~~~~~ 138 (249)
...+++.. ..+-+|..++.
T Consensus 191 ~l~~~~~~---~~i~vH~HND~ 209 (526)
T TIGR00977 191 KVKRSLKQ---PQLGIHAHNDS 209 (526)
T ss_pred HHHHhCCC---CEEEEEECCCC
Confidence 99888863 24788988764
No 325
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=29.10 E-value=1.2e+02 Score=24.60 Aligned_cols=86 Identities=20% Similarity=0.268 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCCeeEEEcCC-CCHHHHHHHhhcC-CceEEeee
Q 025707 108 PEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSE-ASPDTIRRAHAVH-PITAVQLE 185 (249)
Q Consensus 108 ~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~-~~~~~l~~~~~~~-~~~~~q~~ 185 (249)
++.. ..+-+.|-.-|+..+.+=+ . .....++++.+.+-.. + -.||..+ .+.++++.+++.. .| .
T Consensus 19 ~~~a-~~~~~al~~gGi~~iEiT~---~--t~~a~~~I~~l~~~~p-~--~~vGAGTV~~~e~a~~a~~aGA~F--i--- 84 (196)
T PF01081_consen 19 PEDA-VPIAEALIEGGIRAIEITL---R--TPNALEAIEALRKEFP-D--LLVGAGTVLTAEQAEAAIAAGAQF--I--- 84 (196)
T ss_dssp GGGH-HHHHHHHHHTT--EEEEET---T--STTHHHHHHHHHHHHT-T--SEEEEES--SHHHHHHHHHHT-SE--E---
T ss_pred HHHH-HHHHHHHHHCCCCEEEEec---C--CccHHHHHHHHHHHCC-C--CeeEEEeccCHHHHHHHHHcCCCE--E---
Confidence 3444 3344455566765544432 1 1223344444433332 3 3578765 5778888887762 22 1
Q ss_pred cCccccchhhhHHHHHHHhCCcEEe
Q 025707 186 WSLWARDIENEIVPLCRELGIGIVP 210 (249)
Q Consensus 186 ~n~~~~~~~~~~~~~~~~~gi~v~a 210 (249)
.++ ....+++++|+++|+.++.
T Consensus 85 vSP---~~~~~v~~~~~~~~i~~iP 106 (196)
T PF01081_consen 85 VSP---GFDPEVIEYAREYGIPYIP 106 (196)
T ss_dssp EES---S--HHHHHHHHHHTSEEEE
T ss_pred ECC---CCCHHHHHHHHHcCCcccC
Confidence 122 2347899999999999884
No 326
>COG2987 HutU Urocanate hydratase [Amino acid transport and metabolism]
Probab=28.87 E-value=1.2e+02 Score=28.19 Aligned_cols=104 Identities=13% Similarity=0.089 Sum_probs=68.7
Q ss_pred CchHHHHHHHHHc---CCCCCeEEEecccccccCCc---------ccccCCCHHHHHHHHHHHHHHcCCCceeEEEeecC
Q 025707 68 YTNEILLGKALKE---LPRENIQVATKFGFVELGFT---------SVIVKGTPEYVRSCCEASLRRLDVEYIDLYYQHRV 135 (249)
Q Consensus 68 g~se~~lg~~l~~---~~r~~~~I~tK~~~~~~~~~---------~~~~~~s~~~i~~~~~~sL~~Lg~d~iDl~~lh~~ 135 (249)
|.-|..+.-+-+. ..+.+++++.-++-.....+ ......+++. .-.||.+.|+|..
T Consensus 148 GTyeT~~~~~r~h~~gdL~Gk~~lTaGLGGMgGAQplA~~ma~~v~i~vevd~sr-------I~~Rl~t~y~d~~----- 215 (561)
T COG2987 148 GTYETFAEAGRQHFGGDLKGKWVLTAGLGGMGGAQPLAATMAGAVCIAVEVDESR-------IDKRLRTGYLDEI----- 215 (561)
T ss_pred chHHHHHHHHHHhcCCCccceEEEecCCCcccccchHHHHhcCceEEEEEeCHHH-------HHHHHhcchhhhh-----
Confidence 4555555544443 45778899888876543211 0112223333 3356777887743
Q ss_pred CCCCCHHHHHHHHHHHHHcCCeeEEEcCCCCHHHHHHHhhc-CCce--EEeee
Q 025707 136 DTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAV-HPIT--AVQLE 185 (249)
Q Consensus 136 ~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~-~~~~--~~q~~ 185 (249)
...++|++...++..++|+-.+||+-..-.+.+.++++. ..++ .-|.+
T Consensus 216 --a~~ldeAl~~a~~~~~ag~p~SIgl~GNaaei~~~l~~r~~~pD~vtDQTs 266 (561)
T COG2987 216 --AETLDEALALAEEATAAGEPISIGLLGNAAEILPELLRRGIRPDLVTDQTS 266 (561)
T ss_pred --cCCHHHHHHHHHHHHhcCCceEEEEeccHHHHHHHHHHcCCCCceeccccc
Confidence 356899999999999999999999999988988888876 3344 34554
No 327
>cd00248 Mth938-like Mth938-like domain. The members of this family include: Mth938, 2P1, Xcr35, Rpa2829, and several uncharacterized sequences. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. 2P1 is a partially characterized nuclear protein which is homologous to E3-3 from rat and known to be alternately spliced. Xcr35 and Rpa2829 are hypothetical proteins of unknown function from the Xanthomonas campestris and Rhodopseudomonas palustris genomes, respectively, for which the crystal structures have been determined.
Probab=28.83 E-value=1.9e+02 Score=20.91 Aligned_cols=52 Identities=15% Similarity=0.137 Sum_probs=26.7
Q ss_pred cCCCCHHHHHHHhhcCCceEEeeecCccccchhhhHHHHHHHhCCcEEeccc
Q 025707 162 LSEASPDTIRRAHAVHPITAVQLEWSLWARDIENEIVPLCRELGIGIVPYCP 213 (249)
Q Consensus 162 vs~~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~sp 213 (249)
.+..+.+.+..+....+++++-+-..--.+....++.++++++||++-.+..
T Consensus 36 ~~~l~~~~l~~~~~~~~peiliiGTG~~~~~~~~~~~~~l~~~gI~vE~m~T 87 (109)
T cd00248 36 LSDLDPEALLPLLAEDRPDILLIGTGAEIAFLPRALRAALRAAGIGVEVMST 87 (109)
T ss_pred cccCCHHHHHHHHhhCCCCEEEEcCCCCCCcCCHHHHHHHHHcCCeEEEeCc
Confidence 3344555555554433244443322221222236677888888887776654
No 328
>PRK12721 secretion system apparatus protein SsaU; Reviewed
Probab=28.82 E-value=17 Score=32.44 Aligned_cols=42 Identities=29% Similarity=0.377 Sum_probs=35.0
Q ss_pred hhHHHHHHHhCCcEEecccCcccccCCCCCCCCCCCCccccc
Q 025707 195 NEIVPLCRELGIGIVPYCPLGRGFFGGKAVVESVPLDSFLVC 236 (249)
Q Consensus 195 ~~~~~~~~~~gi~v~a~spl~~G~l~g~~~~~~~~~~~~~~~ 236 (249)
..+.+.|+++||+++-.-||+..+...-...+.+|++.+.+.
T Consensus 292 ~~Ir~iA~e~~VPiven~pLARaLY~~~~vg~~IP~ely~aV 333 (349)
T PRK12721 292 LHIVKLAERNGIPVVENIPLARALFKEVECGDYIPETLFEPV 333 (349)
T ss_pred HHHHHHHHHcCCCEEeCHHHHHHHHHhCCCCCcCCHHHHHHH
Confidence 679999999999999999999998866656677787766654
No 329
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=28.82 E-value=1.6e+02 Score=25.38 Aligned_cols=61 Identities=16% Similarity=0.111 Sum_probs=45.2
Q ss_pred HHHHHHHHHHcCCCceeEEEeecCCCCCC---HHHHHHHHHHHHHcCCeeEEEcCCCCHHHHHHHhh
Q 025707 112 RSCCEASLRRLDVEYIDLYYQHRVDTSVP---IEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHA 175 (249)
Q Consensus 112 ~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~---~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~ 175 (249)
++.+.=.+.-++ ..+++++..|....+ ..++++.+.++.++|. +.|=+|+|.++.++...+
T Consensus 142 kqrl~ia~aL~~--~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~-~tvlissH~l~e~~~~~d 205 (293)
T COG1131 142 KQRLSIALALLH--DPELLILDEPTSGLDPESRREIWELLRELAKEGG-VTILLSTHILEEAEELCD 205 (293)
T ss_pred HHHHHHHHHHhc--CCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCC-cEEEEeCCcHHHHHHhCC
Confidence 344444444443 458888888877655 3578999999999986 688999999999888755
No 330
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=28.75 E-value=2.3e+02 Score=20.57 Aligned_cols=54 Identities=22% Similarity=0.246 Sum_probs=29.8
Q ss_pred CceeEEEeecCCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCCHHHHHHHhhcCCceEEeeecCccccchhhhHHHHHHHh
Q 025707 125 EYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAVHPITAVQLEWSLWARDIENEIVPLCREL 204 (249)
Q Consensus 125 d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~ 204 (249)
..+|+..+--+ .+.+.+.++++.+.| ++.+=+-.. ..+.+++++|+++
T Consensus 54 ~~iDlavv~~~-----~~~~~~~v~~~~~~g-~~~v~~~~g--------------------------~~~~~~~~~a~~~ 101 (116)
T PF13380_consen 54 EPIDLAVVCVP-----PDKVPEIVDEAAALG-VKAVWLQPG--------------------------AESEELIEAAREA 101 (116)
T ss_dssp ST-SEEEE-S------HHHHHHHHHHHHHHT--SEEEE-TT--------------------------S--HHHHHHHHHT
T ss_pred CCCCEEEEEcC-----HHHHHHHHHHHHHcC-CCEEEEEcc--------------------------hHHHHHHHHHHHc
Confidence 46666666554 556777777777776 444333221 1236788888888
Q ss_pred CCcEEe
Q 025707 205 GIGIVP 210 (249)
Q Consensus 205 gi~v~a 210 (249)
|+.++.
T Consensus 102 gi~vig 107 (116)
T PF13380_consen 102 GIRVIG 107 (116)
T ss_dssp T-EEEE
T ss_pred CCEEEe
Confidence 888774
No 331
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=28.69 E-value=3.7e+02 Score=22.91 Aligned_cols=137 Identities=15% Similarity=0.135 Sum_probs=80.9
Q ss_pred CCCCHHHHHHHHHHHHH--cCCCeEeCCCCcCCCchHHHHHHHHHcCCCC-CeEEEecccccccCCcccccCCCHHHHHH
Q 025707 37 SPLSEEDGISIIKHAFS--KGITFFDTADKYGPYTNEILLGKALKELPRE-NIQVATKFGFVELGFTSVIVKGTPEYVRS 113 (249)
Q Consensus 37 ~~~~~~~~~~~l~~A~~--~Gi~~~Dta~~Yg~g~se~~lg~~l~~~~r~-~~~I~tK~~~~~~~~~~~~~~~s~~~i~~ 113 (249)
+..++++..++++.|.+ .|+.-+=+.|.|= ....+.|+. ... .+-|+|=++.+.. ..+.+.-..
T Consensus 21 p~~T~~~I~~lc~eA~~~~~~faaVcV~P~~v-----~~a~~~L~~-~~~~~vkv~tVigFP~G-------~~~t~~K~~ 87 (257)
T PRK05283 21 DDDTDEKVIALCHQAKTPVGNTAAICIYPRFI-----PIARKTLRE-QGTPEIRIATVTNFPHG-------NDDIDIALA 87 (257)
T ss_pred CCCCHHHHHHHHHHHHhcCCCeeEEEECHHHH-----HHHHHHhcc-cCCCCCeEEEEecCCCC-------CCcHHHHHH
Confidence 34588999999999999 5777776666552 344445541 112 5888888876542 133455555
Q ss_pred HHHHHHHHcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHc---CC-eeEEEcC-CCCHHH-HHHHhhc---CCceEEee
Q 025707 114 CCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEE---GK-IKYIGLS-EASPDT-IRRAHAV---HPITAVQL 184 (249)
Q Consensus 114 ~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~---G~-ir~iGvs-~~~~~~-l~~~~~~---~~~~~~q~ 184 (249)
..+..++ .|.|-||+++==..=.+.+.+.+.+.+.+.++. |. ++-|==+ -.+.++ +.++... .+.+++..
T Consensus 88 Ea~~Ai~-~GAdEiD~Vinig~lk~g~~~~v~~ei~~v~~~~~~~~~lKVIlEt~~L~~ee~i~~a~~~a~~aGADFVKT 166 (257)
T PRK05283 88 ETRAAIA-YGADEVDVVFPYRALMAGNEQVGFELVKACKEACAANVLLKVIIETGELKDEALIRKASEIAIKAGADFIKT 166 (257)
T ss_pred HHHHHHH-cCCCEEeeeccHHHHhCCcHHHHHHHHHHHHHHhCCCceEEEEEeccccCCHHHHHHHHHHHHHhCCCEEEc
Confidence 6666666 499999998753332334456666666666653 33 3433211 233342 5544433 56777777
Q ss_pred ecC
Q 025707 185 EWS 187 (249)
Q Consensus 185 ~~n 187 (249)
.-.
T Consensus 167 STG 169 (257)
T PRK05283 167 STG 169 (257)
T ss_pred CCC
Confidence 543
No 332
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=28.66 E-value=4e+02 Score=23.32 Aligned_cols=133 Identities=14% Similarity=0.103 Sum_probs=74.9
Q ss_pred CHHHHHHHHHHHHHcCCCeEe----------CCCCcCCC--chHHHHHHHHHcC-CCCCeEEEecccccccCCcccccCC
Q 025707 40 SEEDGISIIKHAFSKGITFFD----------TADKYGPY--TNEILLGKALKEL-PRENIQVATKFGFVELGFTSVIVKG 106 (249)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~D----------ta~~Yg~g--~se~~lg~~l~~~-~r~~~~I~tK~~~~~~~~~~~~~~~ 106 (249)
+.++..+..+.+.+.|+..|| +...||.. ..-+.+.+.++.. ..-++-|+.|+...... ..
T Consensus 65 ~p~~~~~aA~~~~~~g~d~IDlN~GCP~~~v~~~g~Gs~Ll~~p~~~~~iv~av~~~~~~PVsvKiR~g~~~------~~ 138 (318)
T TIGR00742 65 DPNDLAKCAKIAEKRGYDEINLNVGCPSDRVQNGNFGACLMGNADLVADCVKAMQEAVNIPVTVKHRIGIDP------LD 138 (318)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEECCCCHHHhCCCCeehHhhcCHHHHHHHHHHHHHHhCCCeEEEEecCCCC------cc
Confidence 678888888888889999999 44455532 2233444444431 11234577787543210 01
Q ss_pred CHHHHHHHHHHHHHHcCCCceeEEEeecCCC-CCC--------HH-HHHHHHHHHHHcC-CeeEEEcCC-CCHHHHHHHh
Q 025707 107 TPEYVRSCCEASLRRLDVEYIDLYYQHRVDT-SVP--------IE-ETIGEMKKLVEEG-KIKYIGLSE-ASPDTIRRAH 174 (249)
Q Consensus 107 s~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~-~~~--------~~-~~~~~l~~l~~~G-~ir~iGvs~-~~~~~l~~~~ 174 (249)
+.+.. ..+-+.++..| +|.+-+|.... ... .. --|+...++++.- .|--||..+ ++.+.+.+.+
T Consensus 139 ~~~~~-~~~~~~l~~~G---~~~itvHgRt~~~qg~sg~~~~~~~~~~~~~i~~vk~~~~~ipVi~NGdI~s~~da~~~l 214 (318)
T TIGR00742 139 SYEFL-CDFVEIVSGKG---CQNFIVHARKAWLSGLSPKENREIPPLRYERVYQLKKDFPHLTIEINGGIKNSEQIKQHL 214 (318)
T ss_pred hHHHH-HHHHHHHHHcC---CCEEEEeCCchhhcCCCccccccCCchhHHHHHHHHHhCCCCcEEEECCcCCHHHHHHHH
Confidence 11222 23344555666 57788897642 100 11 1477777788765 677777655 4556666665
Q ss_pred hcCCceEEee
Q 025707 175 AVHPITAVQL 184 (249)
Q Consensus 175 ~~~~~~~~q~ 184 (249)
. ..+.+++
T Consensus 215 ~--g~dgVMi 222 (318)
T TIGR00742 215 S--HVDGVMV 222 (318)
T ss_pred h--CCCEEEE
Confidence 3 4555555
No 333
>COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism]
Probab=28.62 E-value=4.7e+02 Score=24.13 Aligned_cols=138 Identities=19% Similarity=0.238 Sum_probs=82.9
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCCCCcC-CCchHHHHHHHHHc-CCC-CCeEEEecccccccCCcccccCCCHHHHHHHHH
Q 025707 40 SEEDGISIIKHAFSKGITFFDTADKYG-PYTNEILLGKALKE-LPR-ENIQVATKFGFVELGFTSVIVKGTPEYVRSCCE 116 (249)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~Dta~~Yg-~g~se~~lg~~l~~-~~r-~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~~~ 116 (249)
......+.++.+++.|.. || +.+.|..+++.+.+ .+. +.+-+ ++.+ .+..+.+++
T Consensus 70 ~~p~V~~Av~~~l~~G~~-------fg~Pte~Ei~~Aell~~~~p~~e~vrf-vnSG--------------TEAtmsAiR 127 (432)
T COG0001 70 AHPAVVEAVQEQLERGLS-------FGAPTELEVELAELLIERVPSIEKVRF-VNSG--------------TEATMSAIR 127 (432)
T ss_pred CCHHHHHHHHHHHHhcCC-------CCCCCHHHHHHHHHHHHhcCcccEEEE-ecch--------------hHHHHHHHH
Confidence 445588889999999954 43 23588889998876 444 34433 3322 466777888
Q ss_pred HHHHHcCCCceeEEEe--ecCCCCCCHHHHHHHHHHHHHcC-------CeeEEEc-----------CCCCHHHHHHHhhc
Q 025707 117 ASLRRLDVEYIDLYYQ--HRVDTSVPIEETIGEMKKLVEEG-------KIKYIGL-----------SEASPDTIRRAHAV 176 (249)
Q Consensus 117 ~sL~~Lg~d~iDl~~l--h~~~~~~~~~~~~~~l~~l~~~G-------~ir~iGv-----------s~~~~~~l~~~~~~ 176 (249)
-..---|.|.|=.+-= |...+. -|++.| .-.+-|+ .=.+.+.++++.+.
T Consensus 128 lARa~TgR~kIikF~G~YHG~~D~-----------~lv~agsg~~t~g~p~s~Gvp~~~a~~ti~~~yND~~al~~~~~~ 196 (432)
T COG0001 128 LARAYTGRDKIIKFEGCYHGHSDS-----------LLVKAGSGAATLGSPSSPGVPADVAKHTLVLPYNDLEALEEAFEE 196 (432)
T ss_pred HHHHhhCCCeEEEEcCCCCCCccH-----------HHhhcCcCcccCCCCCCCCCChhhhccEEEecCCCHHHHHHHHHH
Confidence 7777777766544432 222221 223222 1111222 22456778887776
Q ss_pred C--CceEEe-----eecCccccchh--hhHHHHHHHhCCcEEe
Q 025707 177 H--PITAVQ-----LEWSLWARDIE--NEIVPLCRELGIGIVP 210 (249)
Q Consensus 177 ~--~~~~~q-----~~~n~~~~~~~--~~~~~~~~~~gi~v~a 210 (249)
. .+.++- -+.+++.+..+ +.+.+.|+++|+-+|-
T Consensus 197 ~g~~IAaVIvEPv~gn~g~i~p~~~Fl~~Lr~lt~e~G~lLI~ 239 (432)
T COG0001 197 YGDDIAAVIVEPVAGNMGVVPPEPGFLEGLRELTEEHGALLIF 239 (432)
T ss_pred cCCcEEEEEeccccCCCCCCCCCHHHHHHHHHHHHHcCcEEEE
Confidence 4 455444 45566555433 8999999999998884
No 334
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=28.48 E-value=4.4e+02 Score=23.75 Aligned_cols=41 Identities=7% Similarity=0.108 Sum_probs=30.2
Q ss_pred CcceeecccccC----CCCCC-CCHHHHHHHHHHHHHcCCCeEeCC
Q 025707 22 SKLGYGCMSLSG----CYNSP-LSEEDGISIIKHAFSKGITFFDTA 62 (249)
Q Consensus 22 s~lg~Gt~~~~~----~~~~~-~~~~~~~~~l~~A~~~Gi~~~Dta 62 (249)
.+++||.|.+|+ .+|.. -+.....+.++.+-+.|+..+...
T Consensus 7 ~~f~~~~w~~~~~~~~~~g~~~~~~~~~~e~i~~la~~GfdgVE~~ 52 (382)
T TIGR02631 7 DRFTFGLWTVGWVGRDPFGDATRTALDPVEAVHKLAELGAYGVTFH 52 (382)
T ss_pred CceEEEeeccCCCCCCCCCCCCCCCcCHHHHHHHHHHhCCCEEEec
Confidence 378999998875 34433 234466788899999999999865
No 335
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=28.40 E-value=4e+02 Score=23.26 Aligned_cols=120 Identities=13% Similarity=0.014 Sum_probs=61.6
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCCCCcCCCchHHHHHHHHHcCCCCCeEEEecccccccCCcccccCCCHHHH-------
Q 025707 39 LSEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYV------- 111 (249)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~g~se~~lg~~l~~~~r~~~~I~tK~~~~~~~~~~~~~~~s~~~i------- 111 (249)
.+.++..+.++.+.+.|++.|-.............+-+.++.+.+.-.-+..+. .++..+
T Consensus 72 ls~eei~~~~~~~~~~G~~~i~l~gG~~p~~~~~~~~~li~~Ik~~~~~i~~~~-------------~s~~ei~~~~~~~ 138 (340)
T TIGR03699 72 LSVEEILQKIEELVAYGGTQILLQGGVNPDLGLDYYEDLFRAIKARFPHIHIHS-------------FSPVEIVYIAKKE 138 (340)
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEecCCCCCCCHHHHHHHHHHHHHHCCCcCCCC-------------CCHHHHHHHhccC
Confidence 578899999999999999888765332211122222233332111100011110 112211
Q ss_pred ---HHHHHHHHHHcCCCceeEEE---e-----ecC-CCCCCHHHHHHHHHHHHHcCCeeE----EEcCCCCHHHHHH
Q 025707 112 ---RSCCEASLRRLDVEYIDLYY---Q-----HRV-DTSVPIEETIGEMKKLVEEGKIKY----IGLSEASPDTIRR 172 (249)
Q Consensus 112 ---~~~~~~sL~~Lg~d~iDl~~---l-----h~~-~~~~~~~~~~~~l~~l~~~G~ir~----iGvs~~~~~~l~~ 172 (249)
.+..-+.|++.|+++++..- + +.. ......++.++.++.+++.|.--. +|+ ..+.+++.+
T Consensus 139 g~~~~e~l~~Lk~aG~~~~~~~g~E~~~~~~~~~~~~~~~s~~~~l~~i~~a~~~Gi~v~~~~iiGl-gEt~ed~~~ 214 (340)
T TIGR03699 139 GLSLREVLERLKEAGLDSIPGGGAEILSDRVRKIISPKKISSEEWLEVMETAHKLGLPTTATMMFGH-VETLEDRIE 214 (340)
T ss_pred CCCHHHHHHHHHHcCCCcCCCCcccccCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCccceeEeeC-CCCHHHHHH
Confidence 13444567778888775210 1 110 112356788999999999985332 344 455554443
No 336
>COG1540 Uncharacterized proteins, homologs of lactam utilization protein B [General function prediction only]
Probab=28.29 E-value=77 Score=26.61 Aligned_cols=41 Identities=12% Similarity=0.252 Sum_probs=25.8
Q ss_pred ceeecccccCC---------------CCCCCCHHHHHHHHHHHHHcCCCeEeCCCCcC
Q 025707 24 LGYGCMSLSGC---------------YNSPLSEEDGISIIKHAFSKGITFFDTADKYG 66 (249)
Q Consensus 24 lg~Gt~~~~~~---------------~~~~~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg 66 (249)
=|||.|++|.. |..- |+....+.++.|.+.|+. |-.-|.|.
T Consensus 12 E~fG~w~mG~De~~l~lvsSANIACGfHAG-Dp~~M~rtV~lA~e~gV~-IGAHPgyP 67 (252)
T COG1540 12 EGFGAWRMGDDEALLPLVSSANIACGFHAG-DPLTMRRTVRLAKENGVA-IGAHPGYP 67 (252)
T ss_pred cccCCcccCCcHHHHHHHhhhhHhhcccCC-CHHHHHHHHHHHHHcCCe-eccCCCCc
Confidence 47888888871 3332 566677777777777763 44455554
No 337
>PRK02714 O-succinylbenzoate synthase; Provisional
Probab=28.25 E-value=4e+02 Score=23.18 Aligned_cols=158 Identities=10% Similarity=0.023 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHcCCCeEeCCCCcCCCchHHHHHHHHHcCCCCCeEEEecccccccCCcccccCCCHHHHHHHHHHHHHH
Q 025707 42 EDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRR 121 (249)
Q Consensus 42 ~~~~~~l~~A~~~Gi~~~Dta~~Yg~g~se~~lg~~l~~~~r~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~~ 121 (249)
++..+.++...+.|++.|=.--.-.+...+...-+++++.-.+++.|.--.. ..++++...+-+ +.|+.
T Consensus 120 ~~~~~~a~~~~~~G~~~~KvKvG~~~~~~d~~~v~air~~~g~~~~l~vDaN----------~~w~~~~A~~~~-~~l~~ 188 (320)
T PRK02714 120 EAALQQWQTLWQQGYRTFKWKIGVDPLEQELKIFEQLLERLPAGAKLRLDAN----------GGLSLEEAKRWL-QLCDR 188 (320)
T ss_pred HHHHHHHHHHHHcCCCEEEEEECCCChHHHHHHHHHHHHhcCCCCEEEEECC----------CCCCHHHHHHHH-HHHhh
Confidence 4455566667778888775422100001222222444432223333322221 123444433322 22333
Q ss_pred cCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcC-CeeEEEcCCCCHHHHHHHhhcCCceEEeeecCccccchhhhHHHH
Q 025707 122 LDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEG-KIKYIGLSEASPDTIRRAHAVHPITAVQLEWSLWARDIENEIVPL 200 (249)
Q Consensus 122 Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G-~ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~ 200 (249)
+ ...++.++..|-... .++.+.+|.+.- .=-..|=|-++...+..++.....+++|+..+-.-. ...+.+.
T Consensus 189 l--~~~~i~~iEqP~~~~----~~~~~~~l~~~~~~Pia~DEs~~~~~d~~~~~~~~a~d~v~ik~~k~GG--i~~~~~~ 260 (320)
T PRK02714 189 R--LSGKIEFIEQPLPPD----QFDEMLQLSQDYQTPIALDESVANLAQLQQCYQQGWRGIFVIKPAIAGS--PSRLRQF 260 (320)
T ss_pred c--cCCCccEEECCCCcc----cHHHHHHHHHhCCCCEEECCccCCHHHHHHHHHcCCCCEEEEcchhcCC--HHHHHHH
Confidence 2 134667777764433 345566676543 333567778888899888887778888887665433 2567899
Q ss_pred HHHhCCcEEecccCcccc
Q 025707 201 CRELGIGIVPYCPLGRGF 218 (249)
Q Consensus 201 ~~~~gi~v~a~spl~~G~ 218 (249)
|+.+|+.++..+.+..|+
T Consensus 261 a~~~gi~~~~~~~~es~i 278 (320)
T PRK02714 261 CQQHPLDAVFSSVFETAI 278 (320)
T ss_pred HHHhCCCEEEEechhhHH
Confidence 999999999877665553
No 338
>PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=28.23 E-value=3e+02 Score=25.11 Aligned_cols=55 Identities=4% Similarity=-0.066 Sum_probs=38.3
Q ss_pred CCHHHHHHHhhc-CCceEEeeecCccccch-hhhHHHHHHHhCCcEEecccCccccc
Q 025707 165 ASPDTIRRAHAV-HPITAVQLEWSLWARDI-ENEIVPLCRELGIGIVPYCPLGRGFF 219 (249)
Q Consensus 165 ~~~~~l~~~~~~-~~~~~~q~~~n~~~~~~-~~~~~~~~~~~gi~v~a~spl~~G~l 219 (249)
.+++.+++++.. .+..++..+.|+.-.-. ..++.+.|+++|+.++.=..++.|.+
T Consensus 131 ~d~e~le~ai~~~tklV~lesp~NPtG~v~dl~~I~~la~~~~i~vVvD~a~a~~~~ 187 (425)
T PRK06084 131 DDIAALEALIDERTKAVFCESIGNPAGNIIDIQALADAAHRHGVPLIVDNTVATPVL 187 (425)
T ss_pred CCHHHHHHHhccCCcEEEEeCCCCCCCeecCHHHHHHHHHHcCCEEEEECCCccccc
Confidence 467888887653 45555666667654332 28899999999999998777765544
No 339
>PF02971 FTCD: Formiminotransferase domain; InterPro: IPR013802 The formiminotransferase (FT) domain of formiminotransferase-cyclodeaminase (FTCD) forms a homodimer, with each protomer being comprised of two subdomains. The formiminotransferase domain has an N-terminal subdomain that is made up of a six-stranded mixed beta-pleated sheet and five alpha helices, which are arranged on the external surface of the beta sheet. This, in turn, faces the beta-sheet of the C-terminal subdomain to form a double beta-sheet layer. The two subdomains are separated by a short linker sequence, which is not thought to be any more flexible than the remainder of the molecule. The substrate is predicted to form a number of contacts with residues found in both the N-terminal and C-terminal subdomains []. In humans, deficiency of this enzyme results in a disease phenotype []. This entry represents the C-terminal subdomain of the formiminotransferase domain.; GO: 0005542 folic acid binding, 0016740 transferase activity, 0008152 metabolic process; PDB: 1QD1_B 2PFD_C.
Probab=28.19 E-value=1.8e+02 Score=22.50 Aligned_cols=44 Identities=18% Similarity=0.118 Sum_probs=26.3
Q ss_pred eeEEEcCCCCHHHHHHHhhcCCceEEeeecCccccch------hhhHHHHHHHhCCcEEecc
Q 025707 157 IKYIGLSEASPDTIRRAHAVHPITAVQLEWSLWARDI------ENEIVPLCRELGIGIVPYC 212 (249)
Q Consensus 157 ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~~~------~~~~~~~~~~~gi~v~a~s 212 (249)
|++||+-- ..-..+|+.+|+.+... .+.+-..|++.|+.|...-
T Consensus 39 VkAiG~~l------------~~~~~aQVSmNltd~~~Tpl~~vfe~v~~eA~~~Gv~v~gsE 88 (145)
T PF02971_consen 39 VKAIGWYL------------EERGIAQVSMNLTDYEKTPLHRVFEEVKREAARYGVPVVGSE 88 (145)
T ss_dssp EEEEEEEE------------TTTTEEEEEEEES-TTTS-HHHHHHHHHHHHHCTT--EEEEE
T ss_pred eeEeEEee------------ccCCeeEEEEeeecCCCCcHHHHHHHHHHHHHHhCCCccceE
Confidence 88888732 12346888888877531 2556667777899887543
No 340
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=28.16 E-value=85 Score=27.36 Aligned_cols=47 Identities=19% Similarity=0.235 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCCe
Q 025707 108 PEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKI 157 (249)
Q Consensus 108 ~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~i 157 (249)
.+...+.+.+.+++||++ .|.+.-. .+......+.+.+++|+++|.+
T Consensus 68 ~~~~~~~~~~~l~~LgI~-~D~~~~t--t~~~~~~~v~~i~~~L~ekG~i 114 (319)
T cd00814 68 CDKYHEIFKDLFKWLNIS-FDYFIRT--TSPRHKEIVQEFFKKLYENGYI 114 (319)
T ss_pred HHHHHHHHHHHHHHcCCc-CCCCeeC--CCHHHHHHHHHHHHHHHHCCCE
Confidence 456778899999999995 5754321 2223455688899999999998
No 341
>PRK09028 cystathionine beta-lyase; Provisional
Probab=28.16 E-value=4.5e+02 Score=23.75 Aligned_cols=61 Identities=8% Similarity=-0.047 Sum_probs=42.1
Q ss_pred EcCCCCHHHHHHHhhc-CCceEEeeecCccccchh-hhHHHHHHHhCCcEEecccCcccccCC
Q 025707 161 GLSEASPDTIRRAHAV-HPITAVQLEWSLWARDIE-NEIVPLCRELGIGIVPYCPLGRGFFGG 221 (249)
Q Consensus 161 Gvs~~~~~~l~~~~~~-~~~~~~q~~~n~~~~~~~-~~~~~~~~~~gi~v~a~spl~~G~l~g 221 (249)
.+...+.+.+++++.. .+..++..+.|+.-.... .++.+.|+++|+.++.=..++.+.+..
T Consensus 130 ~v~~~~~e~l~~~l~~~TklV~lespsNPtg~v~dl~~I~~la~~~g~~lvvD~t~a~p~~~~ 192 (394)
T PRK09028 130 YYDPMIGEGIRELIRPNTKVLFLESPGSITMEVQDVPTLSRIAHEHDIVVMLDNTWASPINSR 192 (394)
T ss_pred EECCCCHHHHHHhcCcCceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCccccccCC
Confidence 3433345667776643 556677777787543323 889999999999999888887776443
No 342
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=28.13 E-value=6.1e+02 Score=25.20 Aligned_cols=158 Identities=13% Similarity=0.107 Sum_probs=85.9
Q ss_pred CCCHHHHHHHH-------HHHHHcCCCeEeCC------------C-------CcCCCchH---HH---HHHHHHcCCCCC
Q 025707 38 PLSEEDGISII-------KHAFSKGITFFDTA------------D-------KYGPYTNE---IL---LGKALKELPREN 85 (249)
Q Consensus 38 ~~~~~~~~~~l-------~~A~~~Gi~~~Dta------------~-------~Yg~g~se---~~---lg~~l~~~~r~~ 85 (249)
+++.++..+++ +.|.++|+..||.- + .|| |.-| +. +-+++++.-.++
T Consensus 540 ~mt~~eI~~~i~~f~~aA~~a~~aGfDgveih~ahGyLl~qFlsp~~N~RtD~yG-GslenR~r~~~eiv~~ir~~~~~~ 618 (765)
T PRK08255 540 EMTRADMDRVRDDFVAAARRAAEAGFDWLELHCAHGYLLSSFISPLTNQRTDEYG-GSLENRLRYPLEVFRAVRAVWPAE 618 (765)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCC-CCHHHHhHHHHHHHHHHHHhcCCC
Confidence 35666665554 46678999999852 2 344 2222 12 222333333457
Q ss_pred eEEEecccccccCCcccccCCCHHHHHHHHHHHHHHcCCCceeEEEeecCCCC----CCHH--HHHHHHHHHHHcCCeeE
Q 025707 86 IQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTS----VPIE--ETIGEMKKLVEEGKIKY 159 (249)
Q Consensus 86 ~~I~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~----~~~~--~~~~~l~~l~~~G~ir~ 159 (249)
+.|..|+....... ...+.+... .+-+.|+..|+|+||+ |..... .... -.....+++|+.=.|--
T Consensus 619 ~~v~~ri~~~~~~~----~g~~~~~~~-~~~~~l~~~g~d~i~v---s~g~~~~~~~~~~~~~~~~~~~~~ik~~~~~pv 690 (765)
T PRK08255 619 KPMSVRISAHDWVE----GGNTPDDAV-EIARAFKAAGADLIDV---SSGQVSKDEKPVYGRMYQTPFADRIRNEAGIAT 690 (765)
T ss_pred CeeEEEEccccccC----CCCCHHHHH-HHHHHHHhcCCcEEEe---CCCCCCcCCCCCcCccccHHHHHHHHHHcCCEE
Confidence 88889987543111 123444333 3445577888766665 421110 0000 01223345566545666
Q ss_pred EEcCCC-CHHHHHHHhhcCCceEEeee-cCccccchhhhHHHHHHHhCCc
Q 025707 160 IGLSEA-SPDTIRRAHAVHPITAVQLE-WSLWARDIENEIVPLCRELGIG 207 (249)
Q Consensus 160 iGvs~~-~~~~l~~~~~~~~~~~~q~~-~n~~~~~~~~~~~~~~~~~gi~ 207 (249)
+++.+. +++..+++++....+.+.+- --+.++ .=+...+++.++.
T Consensus 691 ~~~G~i~~~~~a~~~l~~g~~D~v~~gR~~l~dP---~~~~~~~~~~~~~ 737 (765)
T PRK08255 691 IAVGAISEADHVNSIIAAGRADLCALARPHLADP---AWTLHEAAEIGYR 737 (765)
T ss_pred EEeCCCCCHHHHHHHHHcCCcceeeEcHHHHhCc---cHHHHHHHHcCCC
Confidence 777765 67888899888777777663 222233 3366777788776
No 343
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=28.02 E-value=1.2e+02 Score=25.05 Aligned_cols=98 Identities=20% Similarity=0.194 Sum_probs=56.4
Q ss_pred CHHHHHHHHHHHHHc-CCCeEeCCCCcCCCchHHHHHHHHHcCCCCCeEEEecccccccCCcccccCCCHHHHHHHHHHH
Q 025707 40 SEEDGISIIKHAFSK-GITFFDTADKYGPYTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEAS 118 (249)
Q Consensus 40 ~~~~~~~~l~~A~~~-Gi~~~Dta~~Yg~g~se~~lg~~l~~~~r~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~~~~s 118 (249)
+.+++..+.+...+. |+-|...|+-|= +.+...+..+..+.-+ +++-. .+.+.+.+ .+.
T Consensus 11 ~~eda~~a~~~gad~iG~If~~~SpR~V---s~~~a~~i~~~v~~~~-----~VgVf--------~n~~~~~i----~~i 70 (208)
T COG0135 11 RLEDAKAAAKAGADYIGFIFVPKSPRYV---SPEQAREIASAVPKVK-----VVGVF--------VNESIEEI----LEI 70 (208)
T ss_pred CHHHHHHHHHcCCCEEEEEEcCCCCCcC---CHHHHHHHHHhCCCCC-----EEEEE--------CCCCHHHH----HHH
Confidence 567777776664443 666666688774 5666666665433211 22211 12344443 344
Q ss_pred HHHcCCCceeEEEeecCCCCCCHHHHHHHHHHHHH---cCCeeEEEcCCCCH
Q 025707 119 LRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVE---EGKIKYIGLSEASP 167 (249)
Q Consensus 119 L~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~---~G~ir~iGvs~~~~ 167 (249)
++.+ .+|++|+|...+ .+.+++|++ -..++++.++.-..
T Consensus 71 ~~~~---~ld~VQlHG~e~-------~~~~~~l~~~~~~~v~kai~v~~~~~ 112 (208)
T COG0135 71 AEEL---GLDAVQLHGDED-------PEYIDQLKEELGVPVIKAISVSEEGD 112 (208)
T ss_pred HHhc---CCCEEEECCCCC-------HHHHHHHHhhcCCceEEEEEeCCccc
Confidence 4455 458899999744 333445555 46899999986543
No 344
>COG4130 Predicted sugar epimerase [Carbohydrate transport and metabolism]
Probab=27.97 E-value=1.8e+02 Score=24.25 Aligned_cols=58 Identities=16% Similarity=0.388 Sum_probs=40.0
Q ss_pred CCHHHHHHHhhcCCceEEee----ecCccccch---hhhHHHHHHHhCCcEEecccCcccccCCC
Q 025707 165 ASPDTIRRAHAVHPITAVQL----EWSLWARDI---ENEIVPLCRELGIGIVPYCPLGRGFFGGK 222 (249)
Q Consensus 165 ~~~~~l~~~~~~~~~~~~q~----~~n~~~~~~---~~~~~~~~~~~gi~v~a~spl~~G~l~g~ 222 (249)
.++.++..+.+..++.++.+ +||.|.... ..++.++++.-|-.-+..-|+.-|-..+.
T Consensus 49 ~p~a~vka~Aek~Gl~IvSINAlypFn~wt~~~~a~a~~la~yA~acGA~aLvlcPlNd~s~~~~ 113 (272)
T COG4130 49 TPAAEVKALAEKAGLTIVSINALYPFNEWTEERVAEARGLADYAAACGAKALVLCPLNDGSWPGT 113 (272)
T ss_pred CCHHHHHHHHHHcCcEEEEeeccccccccChHHHHHHHHHHHHHHhcCCceEEEEeccCCCCCCc
Confidence 34566666666655555444 577776532 27899999999999999999987654444
No 345
>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
Probab=27.95 E-value=4.8e+02 Score=24.02 Aligned_cols=149 Identities=13% Similarity=0.094 Sum_probs=83.9
Q ss_pred CCHHHHHHHHHHHHHc-CCC-eEeCCCCcCCCchHHHHHHHHH-c----CCCCCeEEEecccccccCCcccccCCCHHHH
Q 025707 39 LSEEDGISIIKHAFSK-GIT-FFDTADKYGPYTNEILLGKALK-E----LPRENIQVATKFGFVELGFTSVIVKGTPEYV 111 (249)
Q Consensus 39 ~~~~~~~~~l~~A~~~-Gi~-~~Dta~~Yg~g~se~~lg~~l~-~----~~r~~~~I~tK~~~~~~~~~~~~~~~s~~~i 111 (249)
.+.+...+.+..+++. +-. .+-..+..|.-.--+.+.+.+. . ...++|+|++= .
T Consensus 104 fp~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~LR~~ia~~l~~~~g~~~~~~~IiiT~G-------------------~ 164 (459)
T COG1167 104 FPLEALRRALARVLRNYGASLALQYGPTAGLPELREAIAAYLLARRGISCEPEQIVITSG-------------------A 164 (459)
T ss_pred CCHHHHHHHHHHHHhhcchhhhhcCCCCCCcHHHHHHHHHHHHHhcCCccCcCeEEEeCC-------------------H
Confidence 4778888888877743 333 1211111221123335666665 2 34567877663 2
Q ss_pred HHHHHHHHHHcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCCeeEEEcCC----CCHHHHHHHhhcCC--ceE----
Q 025707 112 RSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSE----ASPDTIRRAHAVHP--ITA---- 181 (249)
Q Consensus 112 ~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~----~~~~~l~~~~~~~~--~~~---- 181 (249)
.++++-.++-| ++.=|.+.+.+|... .++.-+... -++.++|.. .+++.++++.+..+ +.+
T Consensus 165 q~al~l~~~~l-~~pGd~v~vE~PtY~-------~~~~~~~~~-g~~~~~vp~d~~G~~~e~le~~~~~~~~k~~y~~P~ 235 (459)
T COG1167 165 QQALDLLLRLL-LDPGDTVLVEDPTYP-------GALQALEAL-GARVIPVPVDEDGIDPEALEEALAQWKPKAVYVTPT 235 (459)
T ss_pred HHHHHHHHHHh-CCCCCEEEEcCCCcH-------HHHHHHHHc-CCcEEecCCCCCCCCHHHHHHHHhhcCCcEEEECCC
Confidence 45555444444 355688999888542 222333333 467788754 56788888877533 222
Q ss_pred EeeecCccccc-hhhhHHHHHHHhCCcEEecccCc
Q 025707 182 VQLEWSLWARD-IENEIVPLCRELGIGIVPYCPLG 215 (249)
Q Consensus 182 ~q~~~n~~~~~-~~~~~~~~~~~~gi~v~a~spl~ 215 (249)
.|++....... ....+++.|+++|+.||-=-+++
T Consensus 236 ~qNPtG~tms~~rR~~Ll~lA~~~~~~IIEDD~y~ 270 (459)
T COG1167 236 FQNPTGVTMSLERRKALLALAEKYDVLIIEDDYYG 270 (459)
T ss_pred CCCCCCCccCHHHHHHHHHHHHHcCCeEEeeCcch
Confidence 24443332221 22889999999999999644443
No 346
>PRK12928 lipoyl synthase; Provisional
Probab=27.84 E-value=4e+02 Score=23.00 Aligned_cols=112 Identities=13% Similarity=0.115 Sum_probs=59.3
Q ss_pred cCCCHHHHHHHHHHHHHHcCCCceeEEEeecCCCC-CCHHHHHHHHHHHHHcC-CeeEEEcC--CC---CHHHHHHHhhc
Q 025707 104 VKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTS-VPIEETIGEMKKLVEEG-KIKYIGLS--EA---SPDTIRRAHAV 176 (249)
Q Consensus 104 ~~~s~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~-~~~~~~~~~l~~l~~~G-~ir~iGvs--~~---~~~~l~~~~~~ 176 (249)
...+++.+.+.++ .+..+|+.++-+.-.+..|.. ...+...+.++.+++.. .+ .|.+- .+ ..+.+..+.+.
T Consensus 85 ~~~~~eei~~~a~-~~~~~G~keivitg~~~dDl~d~g~~~~~ell~~Ik~~~p~~-~I~~ltp~~~~~~~e~L~~l~~A 162 (290)
T PRK12928 85 MPLDPDEPERVAE-AVAALGLRYVVLTSVARDDLPDGGAAHFVATIAAIRARNPGT-GIEVLTPDFWGGQRERLATVLAA 162 (290)
T ss_pred CCCCHHHHHHHHH-HHHHCCCCEEEEEEEeCCcccccCHHHHHHHHHHHHhcCCCC-EEEEeccccccCCHHHHHHHHHc
Confidence 3467888988887 577889999888877754322 23344555566666652 22 23221 22 24556666554
Q ss_pred CCceEEeee-------cCccccc----hhhhHHHHHHHhCCcEEecccCcccc
Q 025707 177 HPITAVQLE-------WSLWARD----IENEIVPLCRELGIGIVPYCPLGRGF 218 (249)
Q Consensus 177 ~~~~~~q~~-------~n~~~~~----~~~~~~~~~~~~gi~v~a~spl~~G~ 218 (249)
. ++++.+. +..+.+. ...++++.+++.|=.+...+.+.-|+
T Consensus 163 g-~~i~~hnlEt~~~vl~~m~r~~t~e~~le~l~~ak~~gp~i~~~s~iIvG~ 214 (290)
T PRK12928 163 K-PDVFNHNLETVPRLQKAVRRGADYQRSLDLLARAKELAPDIPTKSGLMLGL 214 (290)
T ss_pred C-chhhcccCcCcHHHHHHhCCCCCHHHHHHHHHHHHHhCCCceecccEEEeC
Confidence 2 2222211 1111111 12567788888873334444444454
No 347
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=27.68 E-value=3.1e+02 Score=21.72 Aligned_cols=98 Identities=10% Similarity=0.072 Sum_probs=53.9
Q ss_pred CCHHHHHHHHHHHHHHcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcC--CeeEEEcCCCCHHHHHHHhhcCCceEEe
Q 025707 106 GTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEG--KIKYIGLSEASPDTIRRAHAVHPITAVQ 183 (249)
Q Consensus 106 ~s~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G--~ir~iGvs~~~~~~l~~~~~~~~~~~~q 183 (249)
.++..+.+.++ .+.+.|.|+|.+-....+--. ......+.++++++.. .+. +.+-..+.....+.+.....+.+|
T Consensus 8 ~~~~~~~~~~~-~~~~~g~d~i~~~~~Dg~~~~-~~~~~~~~v~~i~~~~~~~v~-v~lm~~~~~~~~~~~~~~gadgv~ 84 (210)
T TIGR01163 8 ADFARLGEEVK-AVEEAGADWIHVDVMDGHFVP-NLTFGPPVLEALRKYTDLPID-VHLMVENPDRYIEDFAEAGADIIT 84 (210)
T ss_pred CCHHHHHHHHH-HHHHcCCCEEEEcCCCCCCCC-CcccCHHHHHHHHhcCCCcEE-EEeeeCCHHHHHHHHHHcCCCEEE
Confidence 34556666655 445788888887633222111 1123455555565543 333 666666666555555556677777
Q ss_pred eecCccccchhhhHHHHHHHhCCcE
Q 025707 184 LEWSLWARDIENEIVPLCRELGIGI 208 (249)
Q Consensus 184 ~~~n~~~~~~~~~~~~~~~~~gi~v 208 (249)
++.... ......++.+++.|+.+
T Consensus 85 vh~~~~--~~~~~~~~~~~~~g~~~ 107 (210)
T TIGR01163 85 VHPEAS--EHIHRLLQLIKDLGAKA 107 (210)
T ss_pred EccCCc--hhHHHHHHHHHHcCCcE
Confidence 754332 11255667777777654
No 348
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=27.53 E-value=3.8e+02 Score=22.65 Aligned_cols=49 Identities=18% Similarity=0.064 Sum_probs=30.6
Q ss_pred HHHHcCCC----ceeEEEeecCCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCCH
Q 025707 118 SLRRLDVE----YIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASP 167 (249)
Q Consensus 118 sL~~Lg~d----~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~ 167 (249)
.+++.|++ ++|-..- ........-++++.++++++.|.=-.+|+||-+-
T Consensus 158 ~~~~~Gi~~~~Ii~DPg~g-f~ks~~~~~~~l~~i~~l~~~~~pil~G~SrkSf 210 (257)
T cd00739 158 AAESAGVARNRIILDPGIG-FGKTPEHNLELLRRLDELKQLGLPVLVGASRKSF 210 (257)
T ss_pred HHHHcCCCHHHEEEecCCC-cccCHHHHHHHHHHHHHHHhCCCcEEEEecccHH
Confidence 45567876 5554321 1111122346788888888888777899999763
No 349
>PRK15440 L-rhamnonate dehydratase; Provisional
Probab=27.49 E-value=2e+02 Score=26.06 Aligned_cols=68 Identities=18% Similarity=0.120 Sum_probs=49.9
Q ss_pred HHHHHHHHHHcCCe--e-EEEcCCCCHHHHHHHhhcCCceEEeeecCcccc-chhhhHHHHHHHhCCcEEec
Q 025707 144 TIGEMKKLVEEGKI--K-YIGLSEASPDTIRRAHAVHPITAVQLEWSLWAR-DIENEIVPLCRELGIGIVPY 211 (249)
Q Consensus 144 ~~~~l~~l~~~G~i--r-~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~~~~~~~~~gi~v~a~ 211 (249)
-++.+.+|++.-.+ . .-|-+.++...++.+++...++++|....-.-. ....++.+.|+++|+.+...
T Consensus 247 d~~~~~~L~~~~~~~i~ia~gE~~~~~~~~~~li~~~a~Divq~d~~~~GGit~~~kia~lA~a~gi~~~pH 318 (394)
T PRK15440 247 DYWGYRELKRNAPAGMMVTSGEHEATLQGFRTLLEMGCIDIIQPDVGWCGGLTELVKIAALAKARGQLVVPH 318 (394)
T ss_pred cHHHHHHHHHhCCCCCceecCCCccCHHHHHHHHHcCCCCEEeCCccccCCHHHHHHHHHHHHHcCCeeccc
Confidence 46677777776442 2 237778888999999888889999997665432 11278999999999998765
No 350
>cd06450 DOPA_deC_like DOPA decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.
Probab=27.46 E-value=4e+02 Score=22.84 Aligned_cols=161 Identities=14% Similarity=0.056 Sum_probs=80.9
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCeEeCCCCcCCCchHHHHHHHHHc---CC--CCCeEEEecccccccCCcccccCCCHHH
Q 025707 36 NSPLSEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKE---LP--RENIQVATKFGFVELGFTSVIVKGTPEY 110 (249)
Q Consensus 36 ~~~~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~g~se~~lg~~l~~---~~--r~~~~I~tK~~~~~~~~~~~~~~~s~~~ 110 (249)
....+.....+.+..++......++.++... .-|+.+.+++.+ .+ ..++++ |-.+ .+.
T Consensus 7 ~~~~~~~~~~~~~~~~~n~~~~~y~~~~~~~--~le~~~~~~~~~~~g~~~~~~~~~~-t~gg--------------t~a 69 (345)
T cd06450 7 TTMDPPALLLEMLTSAKNAIDFTWDESPAAT--EMEAEVVNWLAKLFGLPSEDADGVF-TSGG--------------SES 69 (345)
T ss_pred CCCcHHHHHHHHHHHhcCCCCcccccCchhH--HHHHHHHHHHHHHhCCCCCCCCEEE-eCCh--------------hHH
Confidence 3344566677777777776555555555443 466777777754 22 223333 3222 233
Q ss_pred HHHHHHHHHHHcCC-------Cce--eEEEeecCCCCCCHHHHHHHHHHHHHcCCeeEEEcC---CCCHHHHHHHhhc--
Q 025707 111 VRSCCEASLRRLDV-------EYI--DLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLS---EASPDTIRRAHAV-- 176 (249)
Q Consensus 111 i~~~~~~sL~~Lg~-------d~i--Dl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs---~~~~~~l~~~~~~-- 176 (249)
+.-++...+.+..- ..- +.+++..+... ... .....+ ..+++.+-+. ..+++.+++++..
T Consensus 70 ~~~al~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~h~-~~~---~~~~~~--g~~~~~v~~~~~~~~d~~~l~~~i~~~~ 143 (345)
T cd06450 70 NLLALLAARDRARKRLKAGGGRGIDKLVIVCSDQAHV-SVE---KAAAYL--DVKVRLVPVDEDGRMDPEALEAAIDEDK 143 (345)
T ss_pred HHHHHHHHHHHhhhhhhcccccccCCeEEEEcCcchh-HHH---HHHHHH--hcCeEEeeeCCCCCcCHHHHHHHHHHHH
Confidence 44444444433211 011 23444332221 122 222222 3466666553 3467788877653
Q ss_pred ----CC-ceEEeeecCcccc-chhhhHHHHHHHhCCcEEecccCccccc
Q 025707 177 ----HP-ITAVQLEWSLWAR-DIENEIVPLCRELGIGIVPYCPLGRGFF 219 (249)
Q Consensus 177 ----~~-~~~~q~~~n~~~~-~~~~~~~~~~~~~gi~v~a~spl~~G~l 219 (249)
.+ +.+....-|+.-. ....++.+.|+++|+.++.=...+.|.+
T Consensus 144 ~~~~~~~~v~~~~~~~~tG~~~~~~~i~~~~~~~~~~l~vD~a~~~~~~ 192 (345)
T cd06450 144 AEGLNPIMVVATAGTTDTGAIDPLEEIADLAEKYDLWLHVDAAYGGFLL 192 (345)
T ss_pred HCCCCcEEEEEecccCCCCCCCCHHHHHHHHHHhCCeEEEechhhHHHh
Confidence 11 2222233333211 1237899999999999997777666654
No 351
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=27.43 E-value=2.2e+02 Score=23.37 Aligned_cols=80 Identities=21% Similarity=0.189 Sum_probs=43.5
Q ss_pred HHHHHHHcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCC---eeEEEcCC-CCHHHHHHHhhcC-CceEEeeecCcc
Q 025707 115 CEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGK---IKYIGLSE-ASPDTIRRAHAVH-PITAVQLEWSLW 189 (249)
Q Consensus 115 ~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~---ir~iGvs~-~~~~~l~~~~~~~-~~~~~q~~~n~~ 189 (249)
+-+.|-.-|+..+.+=+= ....++.+++++++-. =-.||..+ .+.++++.+.+.. .|- .++
T Consensus 30 ~~~al~~~Gi~~iEit~~--------~~~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~aGA~Fi-----vsP- 95 (213)
T PRK06552 30 ISLAVIKGGIKAIEVTYT--------NPFASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAILAGAQFI-----VSP- 95 (213)
T ss_pred HHHHHHHCCCCEEEEECC--------CccHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHcCCCEE-----ECC-
Confidence 444555667666555431 1124455555554321 12477755 4667777777652 221 122
Q ss_pred ccchhhhHHHHHHHhCCcEEe
Q 025707 190 ARDIENEIVPLCRELGIGIVP 210 (249)
Q Consensus 190 ~~~~~~~~~~~~~~~gi~v~a 210 (249)
....++++.|+++|+.++.
T Consensus 96 --~~~~~v~~~~~~~~i~~iP 114 (213)
T PRK06552 96 --SFNRETAKICNLYQIPYLP 114 (213)
T ss_pred --CCCHHHHHHHHHcCCCEEC
Confidence 2236788888888887763
No 352
>PRK07269 cystathionine gamma-synthase; Reviewed
Probab=27.28 E-value=1.4e+02 Score=26.66 Aligned_cols=55 Identities=7% Similarity=0.105 Sum_probs=39.7
Q ss_pred CCHHHHHHHhh-cCCceEEeeecCccccchh-hhHHHHHHHhCCcEEecccCccccc
Q 025707 165 ASPDTIRRAHA-VHPITAVQLEWSLWARDIE-NEIVPLCRELGIGIVPYCPLGRGFF 219 (249)
Q Consensus 165 ~~~~~l~~~~~-~~~~~~~q~~~n~~~~~~~-~~~~~~~~~~gi~v~a~spl~~G~l 219 (249)
.+++.+++++. ..+..++..+.|+.-.-.. ..+.+.|+++|+.++.=..++.+++
T Consensus 124 ~d~~~l~~~i~~~TklV~lesP~NPtg~~~di~~I~~la~~~gi~vvvD~t~~~~~~ 180 (364)
T PRK07269 124 NTEEELIAAIEEDTDIVYIETPTNPLMVEFDIEKVAKLAHAKGAKVIVDNTFYSPIY 180 (364)
T ss_pred CCHHHHHHhcCcCceEEEEECCCCCCCeeeCHHHHHHHHHHcCCEEEEECCCccccc
Confidence 36777877764 3556666777787543323 8899999999999998877766654
No 353
>PF10171 DUF2366: Uncharacterised conserved protein (DUF2366); InterPro: IPR019322 This is a set of proteins conserved from nematodes to humans. The function is not known.
Probab=27.19 E-value=1.5e+02 Score=23.60 Aligned_cols=51 Identities=18% Similarity=0.275 Sum_probs=34.8
Q ss_pred HHHHHHHHHcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCC
Q 025707 113 SCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEAS 166 (249)
Q Consensus 113 ~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~ 166 (249)
.+++++|..- .-++++++.........+-+..|.++..+|++|++-+.-++
T Consensus 67 ~~f~~~L~e~---sn~l~lv~~~~rNp~S~~hvq~l~~l~nqg~Lr~~nLG~~S 117 (173)
T PF10171_consen 67 QSFEDALLEA---SNDLLLVSPAIRNPTSDKHVQRLMRLRNQGRLRYLNLGLFS 117 (173)
T ss_pred HHHHHHHHHH---hCceeccChhhcCchHHHHHHHHHHHhcCCceEEeeeeeEE
Confidence 3444444443 33667777655555667889999999999999998554433
No 354
>PF03618 Kinase-PPPase: Kinase/pyrophosphorylase; InterPro: IPR005177 This entry represents a family of uncharacterised proteins which are predicted to function as phosphotransferases.; GO: 0005524 ATP binding, 0016772 transferase activity, transferring phosphorus-containing groups
Probab=27.14 E-value=3.9e+02 Score=22.71 Aligned_cols=74 Identities=19% Similarity=0.257 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHc--CCCeEeCCCCcCCCchHHHHHHHHHcCC-CCCeEEEecccccccCCcccccCCCHHHHHHHHHH
Q 025707 41 EEDGISIIKHAFSK--GITFFDTADKYGPYTNEILLGKALKELP-RENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEA 117 (249)
Q Consensus 41 ~~~~~~~l~~A~~~--Gi~~~Dta~~Yg~g~se~~lg~~l~~~~-r~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~~~~ 117 (249)
-+.+..+.++++.. |+++ +.- .|..=++++.+-+.+.... .+.+++.|=+ -..+++.+++
T Consensus 9 GeTAe~v~~A~l~QF~~~~~-~~~-~~p~I~~~~~~~~il~~i~~~~~iV~~Tlv---------------~~~lr~~l~~ 71 (255)
T PF03618_consen 9 GETAETVARAALAQFPDVEF-EIH-RFPFIRTEEQLDEILEEIKEENAIVFYTLV---------------DPELREYLEE 71 (255)
T ss_pred hHHHHHHHHHHHHhCCCCce-EEE-ECCCcCCHHHHHHHHHHHhccCCEEEEeCC---------------CHHHHHHHHH
Confidence 46677777777743 4443 221 2333357788888887743 4567776643 3568899999
Q ss_pred HHHHcCCCceeEEE
Q 025707 118 SLRRLDVEYIDLYY 131 (249)
Q Consensus 118 sL~~Lg~d~iDl~~ 131 (249)
.++..|+.++|++-
T Consensus 72 ~~~~~~i~~~Dll~ 85 (255)
T PF03618_consen 72 FCREHGIPCVDLLG 85 (255)
T ss_pred HHHhcCCCEEeccH
Confidence 99999999999984
No 355
>PRK13561 putative diguanylate cyclase; Provisional
Probab=27.13 E-value=3.2e+02 Score=26.16 Aligned_cols=72 Identities=13% Similarity=0.240 Sum_probs=47.7
Q ss_pred CHHHHHHHHHHHHHcCCeeEEEcCCCCH--HHHHHHhh--cCCceEEeeecCcccc-----chhhhHHHHHHHhCCcEEe
Q 025707 140 PIEETIGEMKKLVEEGKIKYIGLSEASP--DTIRRAHA--VHPITAVQLEWSLWAR-----DIENEIVPLCRELGIGIVP 210 (249)
Q Consensus 140 ~~~~~~~~l~~l~~~G~ir~iGvs~~~~--~~l~~~~~--~~~~~~~q~~~n~~~~-----~~~~~~~~~~~~~gi~v~a 210 (249)
+.+.+...+++|++.|- .|++.+|.. ..+..+.. ..+++.+-++-++... ..-..++..|+..|+.|+|
T Consensus 532 ~~~~~~~~~~~l~~~G~--~i~lddfG~g~ssl~~L~~l~~l~~d~lKiD~s~i~~i~~~~~~v~~i~~~a~~l~i~viA 609 (651)
T PRK13561 532 DPHAAVAILRPLRNAGV--RVALDDFGMGYAGLRQLQHMKSLPIDVLKIDKMFVDGLPEDDSMVAAIIMLAQSLNLQVIA 609 (651)
T ss_pred CHHHHHHHHHHHHHCCC--EEEEECCCCCcccHHHHhhcCCCCCcEEEECHHHHhcCCCCHHHHHHHHHHHHHCCCcEEE
Confidence 35678888999999998 777777653 23333322 2456666665443321 1227789999999999998
Q ss_pred ccc
Q 025707 211 YCP 213 (249)
Q Consensus 211 ~sp 213 (249)
-..
T Consensus 610 egV 612 (651)
T PRK13561 610 EGV 612 (651)
T ss_pred ecC
Confidence 665
No 356
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=27.11 E-value=3e+02 Score=21.31 Aligned_cols=98 Identities=19% Similarity=0.113 Sum_probs=55.9
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCCCCcCCCchHHHHHHHHHcCCCC-CeEEEecccccccCCcccccCCCHHHHHHHHHHH
Q 025707 40 SEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELPRE-NIQVATKFGFVELGFTSVIVKGTPEYVRSCCEAS 118 (249)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~g~se~~lg~~l~~~~r~-~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~~~~s 118 (249)
+.+...++++.+.+.|++-+-+.. ..+..+.+. .++ ++-+..+++..... ...+...+.++..
T Consensus 11 d~~~~~~~~~~~~~~gv~gi~~~g--------~~i~~~~~~-~~~~~~~v~~~v~~~~~~-------~~~~~~~~~a~~a 74 (201)
T cd00945 11 TLEDIAKLCDEAIEYGFAAVCVNP--------GYVRLAADA-LAGSDVPVIVVVGFPTGL-------TTTEVKVAEVEEA 74 (201)
T ss_pred CHHHHHHHHHHHHHhCCcEEEECH--------HHHHHHHHH-hCCCCCeEEEEecCCCCC-------CcHHHHHHHHHHH
Confidence 688999999999999999887664 333333332 233 56666676643210 1133444444444
Q ss_pred HHHcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHc
Q 025707 119 LRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEE 154 (249)
Q Consensus 119 L~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~ 154 (249)
.++|.|.+.+..-+........+++.+.++++.+.
T Consensus 75 -~~~Gad~i~v~~~~~~~~~~~~~~~~~~~~~i~~~ 109 (201)
T cd00945 75 -IDLGADEIDVVINIGSLKEGDWEEVLEEIAAVVEA 109 (201)
T ss_pred -HHcCCCEEEEeccHHHHhCCCHHHHHHHHHHHHHH
Confidence 45587666554332222111246677777777665
No 357
>PRK08574 cystathionine gamma-synthase; Provisional
Probab=27.07 E-value=2.4e+02 Score=25.25 Aligned_cols=54 Identities=17% Similarity=0.120 Sum_probs=37.1
Q ss_pred CHHHHHHHhhc--CCceEEeeecCccccch-hhhHHHHHHHhCCcEEecccCccccc
Q 025707 166 SPDTIRRAHAV--HPITAVQLEWSLWARDI-ENEIVPLCRELGIGIVPYCPLGRGFF 219 (249)
Q Consensus 166 ~~~~l~~~~~~--~~~~~~q~~~n~~~~~~-~~~~~~~~~~~gi~v~a~spl~~G~l 219 (249)
+.+.+++++.. .++.++..+.|+.-... ..++.+.|+++|+.++.=..++.|..
T Consensus 125 d~~~l~~~i~~~~tklV~ie~p~NPtG~v~dl~~I~~la~~~gi~livD~t~a~~~~ 181 (385)
T PRK08574 125 STEDIIEAIKEGRTKLVFIETMTNPTLKVIDVPEVAKAAKELGAILVVDNTFATPLL 181 (385)
T ss_pred CHHHHHHhcCccCceEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCCcccc
Confidence 46777777653 34555666667643222 27899999999999998777766654
No 358
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=26.99 E-value=2.5e+02 Score=22.88 Aligned_cols=49 Identities=20% Similarity=0.196 Sum_probs=27.1
Q ss_pred CCHHHHHHHHHHHHHHcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCCeeEEEcCCC
Q 025707 106 GTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEA 165 (249)
Q Consensus 106 ~s~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~ 165 (249)
.+++.+.+-+ +.+ .+|++|||...+ .+.++.|.+...-..++.+.+.+.
T Consensus 64 ~~~~~i~~~~----~~~---~~d~vQLHg~e~----~~~~~~l~~~~~~~iik~i~v~~~ 112 (210)
T PRK01222 64 ASDEEIDEIV----ETV---PLDLLQLHGDET----PEFCRQLKRRYGLPVIKALRVRSA 112 (210)
T ss_pred CCHHHHHHHH----Hhc---CCCEEEECCCCC----HHHHHHHHhhcCCcEEEEEecCCH
Confidence 3455554443 355 458899998643 122333333222457889988754
No 359
>TIGR01328 met_gam_lyase methionine gamma-lyase. This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.
Probab=26.99 E-value=3.8e+02 Score=24.03 Aligned_cols=55 Identities=9% Similarity=0.088 Sum_probs=37.8
Q ss_pred CCHHHHHHHhhc-CCceEEeeecCccccch-hhhHHHHHHHhCCcEEecccCccccc
Q 025707 165 ASPDTIRRAHAV-HPITAVQLEWSLWARDI-ENEIVPLCRELGIGIVPYCPLGRGFF 219 (249)
Q Consensus 165 ~~~~~l~~~~~~-~~~~~~q~~~n~~~~~~-~~~~~~~~~~~gi~v~a~spl~~G~l 219 (249)
.+++.+++++.. .++.++..+.|+.-.-. ..++.+.|+++|+.++.=..++.|.+
T Consensus 132 ~d~e~l~~~i~~~tklV~le~p~Np~G~v~dl~~I~~la~~~gi~livD~a~a~~~~ 188 (391)
T TIGR01328 132 AIPEEVKAHIKDNTKIVYFETPANPTMKLIDMERVCRDAHSQGVKVIVDNTFATPML 188 (391)
T ss_pred CCHHHHHHhhccCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCCchhcc
Confidence 367777776643 45556666777754332 28899999999999997777665543
No 360
>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=26.93 E-value=4.1e+02 Score=24.42 Aligned_cols=51 Identities=12% Similarity=0.008 Sum_probs=33.6
Q ss_pred CCHHHHHHHhhc-CCceEEeeecCccccch-hhhHHHHHHHhCCcEEecccCc
Q 025707 165 ASPDTIRRAHAV-HPITAVQLEWSLWARDI-ENEIVPLCRELGIGIVPYCPLG 215 (249)
Q Consensus 165 ~~~~~l~~~~~~-~~~~~~q~~~n~~~~~~-~~~~~~~~~~~gi~v~a~spl~ 215 (249)
.+++.+++++.. .+..++..+-|+...-. -+.+.+.|+++|+.++.=+.++
T Consensus 135 ~d~~~l~~~I~~~Tk~I~~e~pgnP~~~v~Di~~I~~iA~~~gi~livD~T~~ 187 (432)
T PRK06702 135 LTADEIVALANDKTKLVYAESLGNPAMNVLNFKEFSDAAKELEVPFIVDNTLA 187 (432)
T ss_pred CCHHHHHHhCCcCCeEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEECCCC
Confidence 366778877654 44445555555552222 2889999999999999766443
No 361
>PF00563 EAL: EAL domain; InterPro: IPR001633 This domain is found in diverse bacterial signalling proteins. It is called EAL after its conserved residues. The EAL domain is a good candidate for a diguanylate phosphodiesterase function []. The domain contains many conserved acidic residues that could participate in metal binding and might form the phosphodiesterase active site. It often but not always occurs along with IPR000014 from INTERPRO and IPR000160 from INTERPRO domains that are also found in many signalling proteins.; PDB: 3PJU_A 3PJX_A 3PJW_A 3PJT_B 3KZP_B 3U2E_B 3S83_A 2R6O_B 3N3T_B 3GG1_A ....
Probab=26.91 E-value=2.2e+02 Score=22.70 Aligned_cols=94 Identities=18% Similarity=0.223 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHcCCC--ceeEEEeecCCCCCCHHHHHHHHHHHHHcCCeeEEEcCCC-----CHHHHHHHhhcCCceEEe
Q 025707 111 VRSCCEASLRRLDVE--YIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEA-----SPDTIRRAHAVHPITAVQ 183 (249)
Q Consensus 111 i~~~~~~sL~~Lg~d--~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~-----~~~~l~~~~~~~~~~~~q 183 (249)
+.+.+...+ ..+.. .+=+-+-+. +- .......+.++++++.|. .+++.++ +.+.+.. .+++.+-
T Consensus 104 f~~~l~~~l-~~~~~~~~l~lei~e~-~~-~~~~~~~~~l~~l~~~G~--~i~ld~~g~~~~~~~~l~~----l~~~~ik 174 (236)
T PF00563_consen 104 FLDWLSNLL-QYGLPPSRLVLEISEN-DL-PNDAELLENLRRLRSLGF--RIALDDFGSGSSSLEYLAS----LPPDYIK 174 (236)
T ss_dssp HHHHHHHHH-HTTGGGGGEEEEEEGH-HH-HHHHHHHHHHHHHHHCT---EEEEEEETSTCGCHHHHHH----HCGSEEE
T ss_pred ccccccccc-cccccccceEEEEech-Hh-hhhHHHHHHHHHHHhcCc--eeEeeeccCCcchhhhhhh----cccccce
Confidence 555666666 54442 232222222 11 223445688999999996 4444443 4444333 3556666
Q ss_pred eecCccc----c---chhhhHHHHHHHhCCcEEeccc
Q 025707 184 LEWSLWA----R---DIENEIVPLCRELGIGIVPYCP 213 (249)
Q Consensus 184 ~~~n~~~----~---~~~~~~~~~~~~~gi~v~a~sp 213 (249)
++.+++. . ..-..++++|+++|+.+++-..
T Consensus 175 ld~~~~~~~~~~~~~~~l~~l~~~~~~~~~~via~gV 211 (236)
T PF00563_consen 175 LDGSLVRDLSDEEAQSLLQSLINLAKSLGIKVIAEGV 211 (236)
T ss_dssp EEHHGHTTTTSHHHHHHHHHHHHHHHHTT-EEEEECE
T ss_pred eecccccccchhhHHHHHHHHHHHhhccccccceeec
Confidence 6655542 1 1227789999999999998654
No 362
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=26.90 E-value=4.3e+02 Score=23.11 Aligned_cols=151 Identities=11% Similarity=0.074 Sum_probs=84.1
Q ss_pred CHHHHHHHHHHHHHcCCCeE-eCCCCcCCCchHHHHHHHHHcCCCCCeEEEecccccccCCcccccCCCHHHHHHHHHHH
Q 025707 40 SEEDGISIIKHAFSKGITFF-DTADKYGPYTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEAS 118 (249)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~-Dta~~Yg~g~se~~lg~~l~~~~r~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~~~~s 118 (249)
..+.+.+.|+...+.||.++ =|+..|. .+-...++..-+..+|+.-......+. ++.+ ...
T Consensus 19 ~~~~a~~aL~~Lk~~GI~vVlaTGRt~~------ev~~l~~~Lgl~~p~I~eNGA~I~~p~-----~~~~----~~~--- 80 (302)
T PRK12702 19 SYGAARQALAALERRSIPLVLYSLRTRA------QLEHLCRQLRLEHPFICEDGSAIYVPE-----HYFP----AGI--- 80 (302)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEcCCCHH------HHHHHHHHhCCCCeEEEeCCcEEEEcc-----cccc----ccc---
Confidence 34568899999999999887 4455443 233333333344467776655432110 0000 000
Q ss_pred HHHcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCCHHHHHHHhhcCCce---EEeeecCc---cccc
Q 025707 119 LRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAVHPIT---AVQLEWSL---WARD 192 (249)
Q Consensus 119 L~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~---~~q~~~n~---~~~~ 192 (249)
...+....|-+.+. ....+..++...|++++++-..+..|+++++.+++.++.....-. ..|=+||- +...
T Consensus 81 -~~~~~~~~~~~~~~--~lg~~y~~ir~~L~~l~~~~~~~f~gF~d~t~~ei~~~TGL~~~~A~~A~~Re~SEp~~w~~~ 157 (302)
T PRK12702 81 -LDEQWQHRPPYYVC--ALGLPYPCLRHILQQVRQDSHLDLIGFGDWTASELAAATGIPLEEAERAQKREYSEIFSYSGD 157 (302)
T ss_pred -cccccccCCCceEE--ecCCCHHHHHHHHHHHHHHhCCCceehhhCCHHHHHHHhCcCHHHHHHHHhccCCcceEecCC
Confidence 00111111222222 112447788899999999988899999999999988775441110 11122331 2222
Q ss_pred hhhhHHHHHHHhCCcEEecc
Q 025707 193 IENEIVPLCRELGIGIVPYC 212 (249)
Q Consensus 193 ~~~~~~~~~~~~gi~v~a~s 212 (249)
...+.+.++++|+.++--.
T Consensus 158 -~~~~~~~~~~~g~~~~~Gg 176 (302)
T PRK12702 158 -PARLREAFAQQEANLTQHL 176 (302)
T ss_pred -HHHHHHHHHHcCCeEEecC
Confidence 2445889999998877544
No 363
>PTZ00372 endonuclease 4-like protein; Provisional
Probab=26.69 E-value=2.8e+02 Score=25.39 Aligned_cols=117 Identities=11% Similarity=0.089 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHcCCCeEeCCCCcC--CCchHHHHHHHHHc---C--CCCCeEEEecccccccCCcccccCCCHHHHHHH
Q 025707 42 EDGISIIKHAFSKGITFFDTADKYG--PYTNEILLGKALKE---L--PRENIQVATKFGFVELGFTSVIVKGTPEYVRSC 114 (249)
Q Consensus 42 ~~~~~~l~~A~~~Gi~~~Dta~~Yg--~g~se~~lg~~l~~---~--~r~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~ 114 (249)
+...+.++.|-+.|+.++=+-+.|. .+..|+.+....+. . ....+.|.-= ...........+++.+.+-
T Consensus 218 ~~~~~eL~rA~~LGa~~VV~HPGs~~~~~~~ee~i~~i~e~L~~~la~~~gV~IlLE----Nmag~g~~lG~~~eeL~~I 293 (413)
T PTZ00372 218 DAFLDDLQRCEQLGIKLYNFHPGSTVGQCSKEEGIKNIADCINKAHEETKSVIIVLE----NTAGQKNSVGSKFEDLRDI 293 (413)
T ss_pred HHHHHHHHHHHHcCCCEEEECCCcCCCCCCHHHHHHHHHHHHHHHHhCcCCCEEEEe----cCCCCCCcccCCHHHHHHH
Confidence 4566778888899999987776663 33334444333322 1 1222222211 1010011122456766666
Q ss_pred HHHHH--HHcCCCceeEEEeecCCCC----CCHHHHHHHHHHHHHcCCeeEEEcC
Q 025707 115 CEASL--RRLDVEYIDLYYQHRVDTS----VPIEETIGEMKKLVEEGKIKYIGLS 163 (249)
Q Consensus 115 ~~~sL--~~Lg~d~iDl~~lh~~~~~----~~~~~~~~~l~~l~~~G~ir~iGvs 163 (249)
++..- .++|+ ++|...++..... ..++++++.+++..-.+++++|=+.
T Consensus 294 id~v~~~~rlGv-CLDTcHafaAGydl~t~e~~~~~l~~f~~~iGl~rL~~vHLN 347 (413)
T PTZ00372 294 IALVEDKSRVGV-CLDTCHLFAAGYDIRTKESFDKVMKEFDEIVGLKYLKAVHLN 347 (413)
T ss_pred HHhcCCcCCeEE-EEEHHHHHhcCCCCCcHHHHHHHHHHHHHhcChhheeEEEEE
Confidence 66542 56776 7888777754432 2345566665555433455555443
No 364
>PRK03031 rnpA ribonuclease P; Reviewed
Probab=26.67 E-value=2.6e+02 Score=20.56 Aligned_cols=64 Identities=19% Similarity=0.180 Sum_probs=42.6
Q ss_pred CCCCeEEEecccccccCCcccccCCCHHHHHHHHHHHHHHcCC---CceeEEEeecCCCC-CCHHHHHHHHHHHHHc
Q 025707 82 PRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLDV---EYIDLYYQHRVDTS-VPIEETIGEMKKLVEE 154 (249)
Q Consensus 82 ~r~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~~Lg~---d~iDl~~lh~~~~~-~~~~~~~~~l~~l~~~ 154 (249)
+|=-+.|+-|++... ..+..+++.+.+.+..+.. ...|++++..+... .+..++.+.|..|.++
T Consensus 47 ~R~G~~VsKK~~~~A---------V~RNriKR~lRe~~R~~~~~l~~g~diVvi~r~~~~~~~~~~l~~~l~~ll~k 114 (122)
T PRK03031 47 TRFGISISQKVSKKA---------VVRNRIKRQIRAALRQLLPRIAPGWDLVIIVKPTAAECNYEQFLQELEQLLIQ 114 (122)
T ss_pred cEEEEEEecccccch---------hhhhHHHHHHHHHHHHhhhccCCCceEEEEECCCcccCCHHHHHHHHHHHHHH
Confidence 444466777754322 3467788888888776542 35799999887654 5677788887777654
No 365
>PRK08622 galactose-6-phosphate isomerase subunit LacB; Reviewed
Probab=26.44 E-value=3.3e+02 Score=21.65 Aligned_cols=97 Identities=10% Similarity=0.020 Sum_probs=69.0
Q ss_pred CCHHHHHHHHHHHHHHcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCCe-eEEEcCCCCHHHHHHHhhcCCceEEee
Q 025707 106 GTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKI-KYIGLSEASPDTIRRAHAVHPITAVQL 184 (249)
Q Consensus 106 ~s~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~i-r~iGvs~~~~~~l~~~~~~~~~~~~q~ 184 (249)
+.--.+.+.+.+-|+..|.+.+|+=-. . ++..+..++...+.+.+.+|.. +.|-+|....-.-..+.+...+.+.++
T Consensus 9 haG~~lK~~l~~~L~~~G~eV~D~G~~-~-~e~~dYpd~a~~va~~V~~g~~d~GIliCGTGiG~siaANKv~GIRAA~~ 86 (171)
T PRK08622 9 HIVTDEKMAVSDYLKSKGHEVIDVGTY-D-FTRTHYPIFGKKVGEAVASGEADLGVCICGTGVGISNAVNKVPGIRSALV 86 (171)
T ss_pred cchHHHHHHHHHHHHHCCCEEEEcCCC-C-CCCCChHHHHHHHHHHHHcCCCcEEEEEcCCcHHHHHHHhcCCCeEEEEe
Confidence 445668999999999999888887642 2 3346678888888888888876 888899888776666666666766665
Q ss_pred ecCccccchhhhHHHHHHHh-CCcEEecc
Q 025707 185 EWSLWARDIENEIVPLCREL-GIGIVPYC 212 (249)
Q Consensus 185 ~~n~~~~~~~~~~~~~~~~~-gi~v~a~s 212 (249)
. +......+++| +..|++++
T Consensus 87 ~--------d~~sA~~aR~hNnaNVL~lG 107 (171)
T PRK08622 87 R--------DMTSALYAKEELNANVIGFG 107 (171)
T ss_pred C--------CHHHHHHHHHhcCCcEEEEC
Confidence 2 13345555555 67777654
No 366
>cd03770 SR_TndX_transposase Serine Recombinase (SR) family, TndX-like transposase subfamily, catalytic domain; composed of large serine recombinases similar to Clostridium TndX and TnpX transposases. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. TndX mediates the excision and circularization of the conjugative transposon Tn5397 from Clostridium difficile. TnpX is responsible for the movement of the nonconjugative chloramphenicol resistance elements of the Tn4451/3 family. Mobile genetic elements such as transposons are important vehicles for the transmission of virulence and antibiotic resistance in many microorganisms.
Probab=26.34 E-value=1.3e+02 Score=22.65 Aligned_cols=52 Identities=12% Similarity=0.152 Sum_probs=35.7
Q ss_pred HHHHHHHHHHcCCCceeEEEeecCCCC-CCHHHHHHHHHHHHHcCCeeEEEcC
Q 025707 112 RSCCEASLRRLDVEYIDLYYQHRVDTS-VPIEETIGEMKKLVEEGKIKYIGLS 163 (249)
Q Consensus 112 ~~~~~~sL~~Lg~d~iDl~~lh~~~~~-~~~~~~~~~l~~l~~~G~ir~iGvs 163 (249)
+..+.+.|+.+.-..+|.++++..+.. -...+....++.|.+.-.|+-+-+.
T Consensus 54 Rp~l~~ll~~~~~g~vd~vvv~~ldRl~R~~~d~~~~~~~l~~~~gv~l~~~~ 106 (140)
T cd03770 54 RPGFNRMIEDIEAGKIDIVIVKDMSRLGRNYLKVGLYMEILFPKKGVRFIAIN 106 (140)
T ss_pred CHHHHHHHHHHHcCCCCEEEEeccchhccCHHHHHHHHHHHHhhcCcEEEEec
Confidence 445667777776678999999888774 3456677778888877344555443
No 367
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=26.32 E-value=4e+02 Score=22.49 Aligned_cols=71 Identities=13% Similarity=0.089 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHcC-CeeEEEcCCCCH------HHHHHHhhcCCceEEeeecCccccchhhhHHHHHHHhCCcEE-ecc
Q 025707 141 IEETIGEMKKLVEEG-KIKYIGLSEASP------DTIRRAHAVHPITAVQLEWSLWARDIENEIVPLCRELGIGIV-PYC 212 (249)
Q Consensus 141 ~~~~~~~l~~l~~~G-~ir~iGvs~~~~------~~l~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~-a~s 212 (249)
++.+++.++++++.. .+.-+.++-+++ +.+.+.....+++.+-++.-+.+. ..++++.|+++|+..+ ..+
T Consensus 71 ~~~~~~~v~~ir~~~~~~plv~m~Y~Npi~~~G~e~f~~~~~~aGvdgviipDlp~ee--~~~~~~~~~~~gl~~i~lv~ 148 (256)
T TIGR00262 71 PEKCFELLKKVRQKHPNIPIGLLTYYNLIFRKGVEEFYAKCKEVGVDGVLVADLPLEE--SGDLVEAAKKHGVKPIFLVA 148 (256)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEEeccHHhhhhHHHHHHHHHHcCCCEEEECCCChHH--HHHHHHHHHHCCCcEEEEEC
Confidence 457888888888652 334344444444 554444444556655555433322 3789999999998744 455
Q ss_pred c
Q 025707 213 P 213 (249)
Q Consensus 213 p 213 (249)
|
T Consensus 149 P 149 (256)
T TIGR00262 149 P 149 (256)
T ss_pred C
Confidence 4
No 368
>PLN02907 glutamate-tRNA ligase
Probab=26.25 E-value=2.9e+02 Score=27.39 Aligned_cols=62 Identities=18% Similarity=0.275 Sum_probs=45.4
Q ss_pred CCCHHHHHHHHHHHHHHcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCCHHHHHHHh
Q 025707 105 KGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAH 174 (249)
Q Consensus 105 ~~s~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~ 174 (249)
........+++.+.|+.||++. |-. .-.+..++...+.+++|.++|+.= +|..+.+.+.+..
T Consensus 258 ~r~~~e~~~~I~~dl~wLG~~~-d~~----~~qS~r~~~y~~~a~~Li~~G~aY---~~~~~~~~~~~~~ 319 (722)
T PLN02907 258 SKESDEFVENILKDIETLGIKY-DAV----TYTSDYFPQLMEMAEKLIKEGKAY---VDDTPREQMRKER 319 (722)
T ss_pred CcCChHHHHHHHHHHHHcCCCC-CCc----ccccccHHHHHHHHHHHHHcCCee---ecCCCHHHHHHHH
Confidence 3345678899999999999976 522 122455788899999999999954 3667777776653
No 369
>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB. This model describes NifB, a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack the most C-terminal region and score between the trusted and noise cutoffs of this model.
Probab=26.16 E-value=5.2e+02 Score=23.81 Aligned_cols=110 Identities=15% Similarity=0.092 Sum_probs=71.3
Q ss_pred cCCCHHHHHHHHHHHHHHcCCCceeEEEeecCCCC-CCHHHHHHHHHHHHHc--CCeeEEEcCCCC---HHHHHHHhhcC
Q 025707 104 VKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTS-VPIEETIGEMKKLVEE--GKIKYIGLSEAS---PDTIRRAHAVH 177 (249)
Q Consensus 104 ~~~s~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~-~~~~~~~~~l~~l~~~--G~ir~iGvs~~~---~~~l~~~~~~~ 177 (249)
...+++.+.+.+++..+.+. .++.+-+-.+.+. ...+.+++.+..++++ |. .+.+++.. ++.++++.+.
T Consensus 58 ~~Ltpee~~~~i~~v~~~~~--~~~~V~iaG~GEPLl~~e~~~~~l~~~~~~~~~i--~i~lsTNG~~l~e~i~~L~~~- 132 (442)
T TIGR01290 58 ELLTPEQALRKARQVAAEIP--QLSVVGIAGPGDPLANIGKTFQTLELVARQLPDV--KLCLSTNGLMLPEHVDRLVDL- 132 (442)
T ss_pred ccCCHHHHHHHHHHHHHhcC--CCCEEEEecCCCcccCccccHHHHHHHHHhcCCC--eEEEECCCCCCHHHHHHHHHC-
Confidence 34788999888888877663 3456667665443 3345688889999887 43 56776644 5667776654
Q ss_pred CceEEeeecCccccchh---------------------------hhHHHHHHHhCCcEEecccCcccc
Q 025707 178 PITAVQLEWSLWARDIE---------------------------NEIVPLCRELGIGIVPYCPLGRGF 218 (249)
Q Consensus 178 ~~~~~q~~~n~~~~~~~---------------------------~~~~~~~~~~gi~v~a~spl~~G~ 218 (249)
.++.+.+.++-+++..- .+-++.+.+.|+.+....++--|.
T Consensus 133 gvd~V~islka~d~e~~~~Iy~~v~~~g~~~tG~~~~~il~e~~l~~l~~l~~~G~~v~v~~vlIpGi 200 (442)
T TIGR01290 133 GVGHVTITINAIDPAVGEKIYPWVWYEGERYTGREAADLLIERQLEGLEKLTERGILVKVNSVLIPGI 200 (442)
T ss_pred CCCeEEEeccCCCHHHHhhcchhhccccccccCcchHHHHHHHHHHHHHHHHhCCCeEEEEEEeeCCc
Confidence 35566666554432110 133566778899988888877664
No 370
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=26.16 E-value=4.6e+02 Score=23.18 Aligned_cols=116 Identities=23% Similarity=0.214 Sum_probs=68.1
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCCCCcC---------C-----C----chHHHHHHHHHcCCCCCeEEEecccccccCCc
Q 025707 39 LSEEDGISIIKHAFSKGITFFDTADKYG---------P-----Y----TNEILLGKALKELPRENIQVATKFGFVELGFT 100 (249)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg---------~-----g----~se~~lg~~l~~~~r~~~~I~tK~~~~~~~~~ 100 (249)
.+.+....+.++|-+.|+.+|=|...-. - + .+-.+|-+.-+ ....++|+|=.
T Consensus 73 l~~e~~~~L~~~~~~~Gi~~~stpfd~~svd~l~~~~v~~~KIaS~~~~n~pLL~~~A~--~gkPvilStGm-------- 142 (329)
T TIGR03569 73 LSEEDHRELKEYCESKGIEFLSTPFDLESADFLEDLGVPRFKIPSGEITNAPLLKKIAR--FGKPVILSTGM-------- 142 (329)
T ss_pred CCHHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHhcCCCEEEECcccccCHHHHHHHHh--cCCcEEEECCC--------
Confidence 5789999999999999999886653221 0 0 11111111111 23345554432
Q ss_pred ccccCCCHHHHHHHHHHHHHHcCCCceeEEEeecCCCC-CCHHH-HHHHHHHHHHcCCeeEEEcCCCCHHHHH
Q 025707 101 SVIVKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTS-VPIEE-TIGEMKKLVEEGKIKYIGLSEASPDTIR 171 (249)
Q Consensus 101 ~~~~~~s~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~-~~~~~-~~~~l~~l~~~G~ir~iGvs~~~~~~l~ 171 (249)
.+.+.|+.+++...+ -|.+.-|+.++|+.... .+.++ -+.++..|++.=. .-||+|+|+.....
T Consensus 143 -----atl~Ei~~Av~~i~~-~G~~~~~i~llhC~s~YP~~~~~~nL~~I~~Lk~~f~-~pVG~SdHt~G~~~ 208 (329)
T TIGR03569 143 -----ATLEEIEAAVGVLRD-AGTPDSNITLLHCTTEYPAPFEDVNLNAMDTLKEAFD-LPVGYSDHTLGIEA 208 (329)
T ss_pred -----CCHHHHHHHHHHHHH-cCCCcCcEEEEEECCCCCCCcccCCHHHHHHHHHHhC-CCEEECCCCccHHH
Confidence 257888888887754 45422268999987642 22222 3555566665432 47999999875433
No 371
>KOG2499 consensus Beta-N-acetylhexosaminidase [Carbohydrate transport and metabolism]
Probab=26.09 E-value=64 Score=30.08 Aligned_cols=48 Identities=21% Similarity=0.237 Sum_probs=33.8
Q ss_pred cCCCCcccCcc-eeecccccCCCCCCCCHHHHHHHHHHHHHcCCCeE---eCCCCc
Q 025707 14 LGTQGLEVSKL-GYGCMSLSGCYNSPLSEEDGISIIKHAFSKGITFF---DTADKY 65 (249)
Q Consensus 14 lg~~g~~vs~l-g~Gt~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~---Dta~~Y 65 (249)
|+-.-.+.|.| ..|+.+.-. .++.+++.++|+.|...|||.+ ||-.+-
T Consensus 225 FPle~~~~PeL~~kGaYs~~~----vYT~eDv~evV~yarlRGIRVlpEfD~PgHt 276 (542)
T KOG2499|consen 225 FPLESPTFPELHRKGAYSPRH----VYTREDVSEVVEYARLRGIRVLPEFDTPGHT 276 (542)
T ss_pred CccccCCchhhhhcCCCCcce----eecHHHHHHHHHHHHhccceeeecccCCccc
Confidence 33334556666 777765222 3688999999999999999995 765443
No 372
>TIGR01862 N2-ase-Ialpha nitrogenase component I, alpha chain. This model represents the alpha chain of all three varieties (Mo-Fe, V-Fe, and Fe-Fe) of component I of nitrogenase.
Probab=25.80 E-value=5.2e+02 Score=23.70 Aligned_cols=137 Identities=16% Similarity=0.076 Sum_probs=71.6
Q ss_pred CCCcCCCchHHHHHHHHHc----CCC-CCeEEEecccccccCCcccccCCCHHHHHHHHHHHHHHcCCCceeEEEeecCC
Q 025707 62 ADKYGPYTNEILLGKALKE----LPR-ENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVD 136 (249)
Q Consensus 62 a~~Yg~g~se~~lg~~l~~----~~r-~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~ 136 (249)
.-.|| .++-|.+++++ .++ +=|+|.+-....- .-+.+..-+++.-++++ +.++.+|.++
T Consensus 96 d~V~G---g~~~L~~aI~~~~~~~~p~~~I~V~~tC~~~l----------iGdDi~~v~~~~~~~~~---~pvi~v~t~g 159 (443)
T TIGR01862 96 DIVFG---GEKKLKKLIHEAFTEFPLIKAISVYATCPTGL----------IGDDIEAVAKEVSKEIG---KDVVAVNCPG 159 (443)
T ss_pred ceeeC---cHHHHHHHHHHHHHhCCccceEEEECCChHHH----------hccCHHHHHHHHHHhcC---CCEEEEecCC
Confidence 34677 57777778876 333 4455555432111 11223333333333443 5788888876
Q ss_pred CCC-----CHHHHHHH-HHHHH--------HcCCeeEEEcCCC--CHHHHHHHhhcCCceEEe-e---------------
Q 025707 137 TSV-----PIEETIGE-MKKLV--------EEGKIKYIGLSEA--SPDTIRRAHAVHPITAVQ-L--------------- 184 (249)
Q Consensus 137 ~~~-----~~~~~~~~-l~~l~--------~~G~ir~iGvs~~--~~~~l~~~~~~~~~~~~q-~--------------- 184 (249)
-.. ....+.++ ++++. +.+.|.-||-.++ +.+.+.++++..++.++- +
T Consensus 160 f~g~~~~~G~~~a~~al~~~l~~~~~~~~~~~~~VNiig~~~~~~d~~el~~lL~~~Gl~v~~~~~~~~t~eei~~~~~A 239 (443)
T TIGR01862 160 FAGVSQSKGHHIANIAVINDKVGTREKEITTEYDVNIIGEYNIGGDAWVMRIYLEEMGIQVVATFTGDGTYDEIRLMHKA 239 (443)
T ss_pred ccCCccchHHHHHHHHHHHHHhCCCCcccCCCCeEEEEccCcCcccHHHHHHHHHHcCCeEEEEECCCCCHHHHHhcccC
Confidence 542 12333333 33443 2467888885553 445777777776655542 2
Q ss_pred ecCcc-ccchhhhHHHHHHH-hCCcEEecccC
Q 025707 185 EWSLW-ARDIENEIVPLCRE-LGIGIVPYCPL 214 (249)
Q Consensus 185 ~~n~~-~~~~~~~~~~~~~~-~gi~v~a~spl 214 (249)
.+|+. .+.......++.++ .|++.+...|+
T Consensus 240 ~lniv~~~~~~~~~A~~L~er~GiP~~~~~p~ 271 (443)
T TIGR01862 240 KLNLVHCARSANYIANELEERYGIPWMKIDFF 271 (443)
T ss_pred CEEEEEChHHHHHHHHHHHHHhCCCeEecccC
Confidence 13332 12111334555554 49999987763
No 373
>PRK08861 cystathionine gamma-synthase; Provisional
Probab=25.74 E-value=4.9e+02 Score=23.39 Aligned_cols=90 Identities=11% Similarity=0.035 Sum_probs=55.5
Q ss_pred eeEEEeecCCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCCHHHHHHHhhc-CCceEEeeecCccccch-hhhHHHHHHHh
Q 025707 127 IDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAV-HPITAVQLEWSLWARDI-ENEIVPLCREL 204 (249)
Q Consensus 127 iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~-~~~~~~q~~~n~~~~~~-~~~~~~~~~~~ 204 (249)
=|-+++..+. .......+..+...+.++-.-+...+.+.+++++.. .++.++..+-|+.-.-. ...+.+.|+++
T Consensus 92 Gd~Il~~~~~----y~~~~~~~~~~~~~~gi~v~~vd~~d~e~l~~~i~~~tklV~lesP~NPtG~v~dl~~I~~la~~~ 167 (388)
T PRK08861 92 DDLIVAPHDC----YGGTYRLFNTRANKGDFKVQFVDQSDAAALDAALAKKPKLILLETPSNPLVRVVDIAELCQKAKAV 167 (388)
T ss_pred CCEEEEcCCc----hHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHhcCcCCeEEEEECCCCCCCcccCHHHHHHHHHHc
Confidence 3556654332 233444444444444455555555677888777643 45566666777653322 27899999999
Q ss_pred CCcEEecccCcccccC
Q 025707 205 GIGIVPYCPLGRGFFG 220 (249)
Q Consensus 205 gi~v~a~spl~~G~l~ 220 (249)
|+.++.=..++.|.+.
T Consensus 168 gi~vIvDea~~~~~~~ 183 (388)
T PRK08861 168 GALVAVDNTFLTPVLQ 183 (388)
T ss_pred CCEEEEECCccccccC
Confidence 9999988887776544
No 374
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=25.71 E-value=3.6e+02 Score=24.48 Aligned_cols=95 Identities=12% Similarity=0.128 Sum_probs=52.7
Q ss_pred cCCCeEeCCC--------CcCCCchHHHHHHHHHcCCCCCeEEEecccccccCCccccc--CCCHHHHHHHHHHHHHHcC
Q 025707 54 KGITFFDTAD--------KYGPYTNEILLGKALKELPRENIQVATKFGFVELGFTSVIV--KGTPEYVRSCCEASLRRLD 123 (249)
Q Consensus 54 ~Gi~~~Dta~--------~Yg~g~se~~lg~~l~~~~r~~~~I~tK~~~~~~~~~~~~~--~~s~~~i~~~~~~sL~~Lg 123 (249)
..++++||.. .|. |.....+-.+.+. .|-++++.+.-...+..++.... ...++.+...+.+.|++.|
T Consensus 291 ~~~~f~Dt~~~~t~~y~~~y~-g~~~p~l~~~~~~-~ryDlvlll~pd~Pwv~DGlR~~~D~e~R~~f~~~l~~~l~~~g 368 (399)
T PRK08099 291 NKVAFIDTDFVTTQAFCKKYE-GREHPFVQALIDE-YRFDLTILLENNTPWVADGLRSLGSSVDRKRFQNLLKEMLKENN 368 (399)
T ss_pred CCeEEEeCChHHHHHHHHHhC-CCCCHHHHHHHHh-CCCCEEEEcCCCCCcccCCcccCCCHHHHHHHHHHHHHHHHHcC
Confidence 5799999964 232 2344445555553 44445555543333322221111 1135677888999999999
Q ss_pred CCceeEEEeecCCCCCCHHHHHHHHHHHHH
Q 025707 124 VEYIDLYYQHRVDTSVPIEETIGEMKKLVE 153 (249)
Q Consensus 124 ~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~ 153 (249)
..++.+ -..+....+..+.++++++-.
T Consensus 369 ~~~v~l---~~g~~~eR~~~a~~~i~~~l~ 395 (399)
T PRK08099 369 IEYVHV---ESPDYDKRYLRCVELVDQMLG 395 (399)
T ss_pred CCEEEE---CCCCHHHHHHHHHHHHHHHhh
Confidence 876544 223334455666777766644
No 375
>TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities.
Probab=25.71 E-value=3.6e+02 Score=24.43 Aligned_cols=54 Identities=7% Similarity=0.049 Sum_probs=35.0
Q ss_pred CCHHHHHHHhhc-CCceEEeeecCccccch-hhhHHHHHHHhCCcEEecccCcccc
Q 025707 165 ASPDTIRRAHAV-HPITAVQLEWSLWARDI-ENEIVPLCRELGIGIVPYCPLGRGF 218 (249)
Q Consensus 165 ~~~~~l~~~~~~-~~~~~~q~~~n~~~~~~-~~~~~~~~~~~gi~v~a~spl~~G~ 218 (249)
.+.+.+++++.. ....++..+.|+.-.-. .+++.+.|+++|+.++.=..++.|.
T Consensus 130 ~d~~~l~~~l~~~t~~V~le~p~NPtg~v~dl~~I~~la~~~~i~livD~t~~~~~ 185 (418)
T TIGR01326 130 DDPEEFEKAIDENTKAVFAETIGNPAINVPDIEAIAEVAHAHGVPLIVDNTFATPY 185 (418)
T ss_pred CCHHHHHHhcCcCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCchhh
Confidence 367777776643 34445555556532211 3789999999999998777766554
No 376
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=25.54 E-value=3.7e+02 Score=21.90 Aligned_cols=48 Identities=10% Similarity=0.094 Sum_probs=34.5
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCCCCcCCCchHHHHHHHHHcCCCCCeEEEe
Q 025707 39 LSEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELPRENIQVAT 90 (249)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~g~se~~lg~~l~~~~r~~~~I~t 90 (249)
.+.+++.++.+..++.|++.++....-. .+.+.+.+.-++. +++.|..
T Consensus 13 ~~~~~a~~ia~al~~gGi~~iEit~~tp--~a~~~I~~l~~~~--~~~~vGA 60 (201)
T PRK06015 13 DDVEHAVPLARALAAGGLPAIEITLRTP--AALDAIRAVAAEV--EEAIVGA 60 (201)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCCc--cHHHHHHHHHHHC--CCCEEee
Confidence 3789999999999999999999876543 4667775543323 3455543
No 377
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=25.29 E-value=3.8e+02 Score=21.90 Aligned_cols=47 Identities=13% Similarity=0.191 Sum_probs=34.3
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCCCCcCCCchHHHHHHHHHcCCCCCeEEE
Q 025707 39 LSEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELPRENIQVA 89 (249)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~g~se~~lg~~l~~~~r~~~~I~ 89 (249)
.+.+++.++.+..++.|++.++....-. .+.+.+.+.-++.+ ++.|.
T Consensus 17 ~~~e~a~~~~~al~~~Gi~~iEit~~t~--~a~~~i~~l~~~~~--~~~vG 63 (204)
T TIGR01182 17 DDVDDALPLAKALIEGGLRVLEVTLRTP--VALDAIRLLRKEVP--DALIG 63 (204)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCCc--cHHHHHHHHHHHCC--CCEEE
Confidence 3789999999999999999999876443 46666766555333 45443
No 378
>TIGR00328 flhB flagellar biosynthetic protein FlhB. FlhB and its functionally equivalent orthologs, from among a larger superfamily of proteins involved in type III protein export systems, are specifically involved in flagellar protein export. The seed members are restricted and the trusted cutoff is set high such that the proteins gathered by this model play roles specifically related to flagellar structures. Full-length homologs scoring below the trusted cutoff are involved in peptide export but not necessarily in the creation of flagella.
Probab=25.27 E-value=22 Score=31.68 Aligned_cols=42 Identities=21% Similarity=0.377 Sum_probs=33.9
Q ss_pred hhHHHHHHHhCCcEEecccCcccccCCCCCCCCCCCCccccc
Q 025707 195 NEIVPLCRELGIGIVPYCPLGRGFFGGKAVVESVPLDSFLVC 236 (249)
Q Consensus 195 ~~~~~~~~~~gi~v~a~spl~~G~l~g~~~~~~~~~~~~~~~ 236 (249)
..+.+.|+++||+++-..||+..+...-...+.+|++.+.+.
T Consensus 292 ~~I~~~A~~~~vPi~~~~~LAr~Ly~~~~~g~~IP~~ly~aV 333 (347)
T TIGR00328 292 LKIKEIARENNVPIVENPPLARALYRQVEIGQEIPPELYKAV 333 (347)
T ss_pred HHHHHHHHHcCCCEEeCHHHHHHHHHcCCCCCcCCHHHHHHH
Confidence 689999999999999999999998755555567777666543
No 379
>PF04084 ORC2: Origin recognition complex subunit 2 ; InterPro: IPR007220 The Origin Recognition Complex (ORC) is a six-subunit ATP-dependent DNA-binding complex encoded in yeast by ORC1-6 []. ORC is a central component for eukaryotic DNA replication, and binds chromatin at replication origins throughout the cell cycle []. ORC directs DNA replication throughout the genome and is required for its initiation [, , ]. ORC bound at replication origins serves as the foundation for assembly of the pre-replicative complex (pre-RC), which includes Cdc6, Tah11 (aka Cdt1), and the Mcm2-7 complex [, , ]. Pre-RC assembly during G1 is required for replication licensing of chromosomes prior to DNA synthesis during S phase [, , ]. Cell cycle-regulated phosphorylation of Orc2, Orc6, Cdc6, and MCM by the cyclin-dependent protein kinase Cdc28 regulates initiation of DNA replication, including blocking reinitiation in G2/M phase [, , , ]. In yeast, ORC also plays a role in the establishment of silencing at the mating-type loci Hidden MAT Left (HML) and Hidden MAT Right (HMR) [, , ]. ORC participates in the assembly of transcriptionally silent chromatin at HML and HMR by recruiting the Sir1 silencing protein to the HML and HMR silencers [, , ]. Both Orc1 and Orc5 bind ATP, though only Orc1 has ATPase activity []. The binding of ATP by Orc1 is required for ORC binding to DNA and is essential for cell viability []. The ATPase activity of Orc1 is involved in formation of the pre-RC [, , ]. ATP binding by Orc5 is crucial for the stability of ORC as a whole. Only the Orc1-5 subunits are required for origin binding; Orc6 is essential for maintenance of pre-RCs once formed []. Interactions within ORC suggest that Orc2-3-6 may form a core complex []. ORC homologues have been found in various eukaryotes, including fission yeast, insects, amphibians, and humans []. This entry represents subunit 2, which binds the origin of replication. It plays a role in chromosome replication and mating type transcriptional silencing.; GO: 0006260 DNA replication, 0000808 origin recognition complex, 0005634 nucleus
Probab=25.26 E-value=4.7e+02 Score=23.01 Aligned_cols=112 Identities=17% Similarity=0.177 Sum_probs=65.8
Q ss_pred HHHHcCCCeEeCCCCcCCCchHHHHHHHHHcCCCC---CeEEEecccccccCCc---------cc-ccCCCHHHHHHHHH
Q 025707 50 HAFSKGITFFDTADKYGPYTNEILLGKALKELPRE---NIQVATKFGFVELGFT---------SV-IVKGTPEYVRSCCE 116 (249)
Q Consensus 50 ~A~~~Gi~~~Dta~~Yg~g~se~~lg~~l~~~~r~---~~~I~tK~~~~~~~~~---------~~-~~~~s~~~i~~~~~ 116 (249)
.-+..|+|.. .||.|.-..+|-++.+..-.+ ..+|.-....+...-. -. .....+..+.++++
T Consensus 49 ~eL~~GFnlL----~YG~GSKr~lL~~Fa~~~l~~~~~~~~vvvnGy~p~~~~k~il~~I~~~l~~~~~~~~~~~~~~~~ 124 (326)
T PF04084_consen 49 FELSQGFNLL----FYGYGSKRKLLNDFAEKYLSDWGDGPVVVVNGYFPSLSIKDILNTIEEALLPEPSKKPKSPSEQLD 124 (326)
T ss_pred HHHhCCCeEE----EEecChHHHHHHHHHHHHhhccCCCcEEEEEccCCCCcHHHHHHHHHHHHhhhcccccCCHHHHHH
Confidence 3457799998 788888888888888773333 3334344332211100 00 01122334455555
Q ss_pred HHHHHcCCC--ceeEEE-eecCCCCC-CHHHHHHHHHHHHHcCCeeEEEcCCC
Q 025707 117 ASLRRLDVE--YIDLYY-QHRVDTSV-PIEETIGEMKKLVEEGKIKYIGLSEA 165 (249)
Q Consensus 117 ~sL~~Lg~d--~iDl~~-lh~~~~~~-~~~~~~~~l~~l~~~G~ir~iGvs~~ 165 (249)
...+.+... ...+++ +|+.|... ..+.+-..|..|-.--.|.-|+--++
T Consensus 125 ~i~~~l~~~~~~~~l~lvIHnIDg~~LR~~~~Q~~La~LA~~p~I~lIASiDh 177 (326)
T PF04084_consen 125 FIISYLESRPSPPPLYLVIHNIDGPSLRNEKAQSLLAQLASIPNIHLIASIDH 177 (326)
T ss_pred HHHHHHhccCCCCceEEEEECCCChhhcChHHHHHHHHHHcCCCeEEEEeccC
Confidence 555555544 455555 49988753 34567778888888888888876554
No 380
>PRK04390 rnpA ribonuclease P; Reviewed
Probab=25.25 E-value=2.8e+02 Score=20.39 Aligned_cols=64 Identities=14% Similarity=0.201 Sum_probs=39.9
Q ss_pred CCCCeEEEecccccccCCcccccCCCHHHHHHHHHHHHHHcCC--CceeEEEeecCCC-CCCHHHHHHHHHHHHHc
Q 025707 82 PRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLDV--EYIDLYYQHRVDT-SVPIEETIGEMKKLVEE 154 (249)
Q Consensus 82 ~r~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~~Lg~--d~iDl~~lh~~~~-~~~~~~~~~~l~~l~~~ 154 (249)
+|=-+.|+-|.+... ..+..+++.+.+++..... ...|++++..+.. ..+..++.+.|.+|.+.
T Consensus 44 ~R~G~~VsKK~~~~A---------V~RNRiKR~lRE~~R~~~~~l~~~DiVvi~r~~~~~~~~~~l~~~l~~ll~k 110 (120)
T PRK04390 44 PRLGLVVGKKTAKRA---------VERNYMKRVIREWFRLNQHRLPPVDFVVRVQRKFDRATAKQAVAELAQLMAK 110 (120)
T ss_pred ceEEEEEecccCcch---------hhhhHHHHHHHHHHHhccccCCCceEEEEeCCCcccCCHHHHHHHHHHHHHH
Confidence 455567777754322 3467777777777765432 3569999988754 34566666666666543
No 381
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=25.20 E-value=3.8e+02 Score=21.94 Aligned_cols=50 Identities=10% Similarity=0.139 Sum_probs=36.1
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCCCCcCCCchHHHHHHHHHcCCC-CCeEEEe
Q 025707 39 LSEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELPR-ENIQVAT 90 (249)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~g~se~~lg~~l~~~~r-~~~~I~t 90 (249)
.+.+++.++.+..++.|++.++.+..-. .+.+.+.+.-++.+. .++.|..
T Consensus 22 ~~~~~a~~~~~al~~~Gi~~iEit~~~~--~a~~~i~~l~~~~~~~p~~~vGa 72 (213)
T PRK06552 22 ESKEEALKISLAVIKGGIKAIEVTYTNP--FASEVIKELVELYKDDPEVLIGA 72 (213)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEECCCc--cHHHHHHHHHHHcCCCCCeEEee
Confidence 3789999999999999999999876543 466666655543332 2576654
No 382
>COG2055 Malate/L-lactate dehydrogenases [Energy production and conversion]
Probab=25.08 E-value=5e+02 Score=23.23 Aligned_cols=88 Identities=13% Similarity=0.047 Sum_probs=50.2
Q ss_pred CCHHHHHHHHHHHHHHcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCCHHHHHHHhhc---------
Q 025707 106 GTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAV--------- 176 (249)
Q Consensus 106 ~s~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~--------- 176 (249)
.+++.+++-+.+.|.+.|++. ++...+.+.|-..- .-|+.+|....+...++.
T Consensus 6 ~~~e~L~~~~~~vl~~~G~~e------------e~A~~vA~~lv~ad------~~G~~SHGv~r~p~yi~~l~~G~i~~~ 67 (349)
T COG2055 6 VSAEELKALIEEVLRKAGVPE------------EDARAVADVLVAAD------LRGVDSHGVGRLPGYVRRLKAGKINPD 67 (349)
T ss_pred ecHHHHHHHHHHHHHHcCCCH------------HHHHHHHHHHHHHH------hcCCcccchHHHHHHHHHHHcCCcCCC
Confidence 578999999999999999732 11222222222221 346777777666555432
Q ss_pred CCce-------EEeeecCc-----cccchhhhHHHHHHHhCCcEEec
Q 025707 177 HPIT-------AVQLEWSL-----WARDIENEIVPLCRELGIGIVPY 211 (249)
Q Consensus 177 ~~~~-------~~q~~~n~-----~~~~~~~~~~~~~~~~gi~v~a~ 211 (249)
..+. +++++=+- .....-..+++.|+++||++++-
T Consensus 68 a~~~i~~~~~a~~~iDa~~g~G~~a~~~am~~aie~Ak~~Gia~vav 114 (349)
T COG2055 68 AEPEIVREAPAVAVLDADGGFGQVAAKKAMELAIEKAKQHGIAAVAV 114 (349)
T ss_pred CceEEEeecCcEEEEeCCCCcchHHHHHHHHHHHHHHHHhCeeEEEE
Confidence 1122 22322111 11112377899999999999864
No 383
>PRK10200 putative racemase; Provisional
Probab=25.00 E-value=3.2e+02 Score=22.56 Aligned_cols=63 Identities=21% Similarity=0.078 Sum_probs=45.2
Q ss_pred CHHHHHHHHHHHHHHcCCCceeEEEeecCCCC------------CCHHHHHHHHHHHHHcCCeeEEEcCCCCHHHH
Q 025707 107 TPEYVRSCCEASLRRLDVEYIDLYYQHRVDTS------------VPIEETIGEMKKLVEEGKIKYIGLSEASPDTI 170 (249)
Q Consensus 107 s~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~------------~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l 170 (249)
+.+..++=++..-.+.+.+|++.+.+++++-. .+.....+.++.|.+.| +..|.+...++...
T Consensus 15 T~~~~~~i~~~t~a~~d~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~l~~~~~~L~~~g-~~~iviaCNTah~~ 89 (230)
T PRK10200 15 TIPYYRLINEGIKQRLGGLHSAQLLLHSVDFHEIEECQRRGEWDKTGDILAEAALGLQRAG-AEGIVLCTNTMHKV 89 (230)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCeEEEeCCChHHHHHHHHCCCcchHHHHHHHHHHHHHHcC-CCEEEECCchHHHH
Confidence 44556666667777888899999999987432 23445677788887777 68888887776544
No 384
>cd00502 DHQase_I Type I 3-dehydroquinase, (3-dehydroquinate dehydratase or DHQase.) Catalyzes the cis-dehydration of 3-dehydroquinate via a covalent imine intermediate to produce dehydroshikimate. Dehydroquinase is the third enzyme in the shikimate pathway, which is involved in the biosynthesis of aromatic amino acids. Type I DHQase exists as a homodimer. Type II 3-dehydroquinase also catalyzes the same overall reaction, but is unrelated in terms of sequence and structure, and utilizes a completely different reaction mechanism.
Probab=24.93 E-value=3.8e+02 Score=21.83 Aligned_cols=112 Identities=14% Similarity=0.066 Sum_probs=61.3
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCCCCcCCCchHHHHHHHHHcCCCCCeEEEecccccccCCcccccCCCHHHHHHHHHHH
Q 025707 39 LSEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEAS 118 (249)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~g~se~~lg~~l~~~~r~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~~~~s 118 (249)
.++++-.++++.+++.|+.++|.=-... .-.+.+. ..+ ..+.+++++..-.... .+.+.+...+++
T Consensus 73 ~~~~~~~~ll~~~~~~~~d~vDiEl~~~--~~~~~~~-~~~-~~~~kiI~S~H~f~~t---------p~~~~l~~~~~~- 138 (225)
T cd00502 73 GSEEEYLELLEEALKLGPDYVDIELDSA--LLEELIN-SRK-KGNTKIIGSYHDFSGT---------PSDEELVSRLEK- 138 (225)
T ss_pred CCHHHHHHHHHHHHHHCCCEEEEEecch--HHHHHHH-HHH-hCCCEEEEEeccCCCC---------cCHHHHHHHHHH-
Confidence 3678888999999999999999743211 1222222 222 2566777776643221 134556655554
Q ss_pred HHHcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCC
Q 025707 119 LRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEAS 166 (249)
Q Consensus 119 L~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~ 166 (249)
+..+|.|.+=+... +.+..+...++....+++....+..|+++.-.
T Consensus 139 ~~~~gadivKla~~--~~~~~D~~~ll~~~~~~~~~~~~p~i~~~MG~ 184 (225)
T cd00502 139 MAALGADIVKIAVM--ANSIEDNLRLLKFTRQVKNLYDIPLIAINMGE 184 (225)
T ss_pred HHHhCCCEEEEEec--CCCHHHHHHHHHHHHHHHhcCCCCEEEEEcCC
Confidence 44566655554443 22333445556665566554434445554433
No 385
>PRK06256 biotin synthase; Validated
Probab=24.93 E-value=4.6e+02 Score=22.78 Aligned_cols=136 Identities=20% Similarity=0.226 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHcCC-CeEeCCCCcCCCchH-HHHHHHHHc-CCCCCeEEEecccccccCCcccccCCCHHHHHHHH
Q 025707 39 LSEEDGISIIKHAFSKGI-TFFDTADKYGPYTNE-ILLGKALKE-LPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCC 115 (249)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi-~~~Dta~~Yg~g~se-~~lg~~l~~-~~r~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~~ 115 (249)
.+.++..+.++.+.+.|+ +++-.+..++....+ +.+-+.++. ..+-.+-+.+-.+... +..
T Consensus 91 ~s~eeI~~~~~~~~~~g~~~~~l~~~g~~p~~~~~~~~~e~i~~i~~~~~i~~~~~~g~l~----------------~e~ 154 (336)
T PRK06256 91 LDIEELIEAAKEAIEEGAGTFCIVASGRGPSGKEVDQVVEAVKAIKEETDLEICACLGLLT----------------EEQ 154 (336)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEecCCCCCchHHHHHHHHHHHHHhcCCCcEEecCCcCC----------------HHH
Q ss_pred HHHHHHcCCCceeEE------EeecCCCCCCHHHHHHHHHHHHHcCCeeE----EEcCCCCHHHHHHHhhc-CCceEEee
Q 025707 116 EASLRRLDVEYIDLY------YQHRVDTSVPIEETIGEMKKLVEEGKIKY----IGLSEASPDTIRRAHAV-HPITAVQL 184 (249)
Q Consensus 116 ~~sL~~Lg~d~iDl~------~lh~~~~~~~~~~~~~~l~~l~~~G~ir~----iGvs~~~~~~l~~~~~~-~~~~~~q~ 184 (249)
-+.|++.|++.+-+- .+.........++.+++++.+++.|.--. +|+ +.+.+.+.+.+.. ....+..+
T Consensus 155 l~~LkeaG~~~v~~~lEts~~~~~~i~~~~t~~~~i~~i~~a~~~Gi~v~~~~I~Gl-gEt~ed~~~~~~~l~~l~~~~v 233 (336)
T PRK06256 155 AERLKEAGVDRYNHNLETSRSYFPNVVTTHTYEDRIDTCEMVKAAGIEPCSGGIIGM-GESLEDRVEHAFFLKELDADSI 233 (336)
T ss_pred HHHHHHhCCCEEecCCccCHHHHhhcCCCCCHHHHHHHHHHHHHcCCeeccCeEEeC-CCCHHHHHHHHHHHHhCCCCEE
Q ss_pred ecCcccc
Q 025707 185 EWSLWAR 191 (249)
Q Consensus 185 ~~n~~~~ 191 (249)
++|.+.+
T Consensus 234 ~i~~l~P 240 (336)
T PRK06256 234 PINFLNP 240 (336)
T ss_pred eeccccc
No 386
>PRK11059 regulatory protein CsrD; Provisional
Probab=24.92 E-value=6.2e+02 Score=24.29 Aligned_cols=71 Identities=13% Similarity=0.053 Sum_probs=45.6
Q ss_pred CHHHHHHHHHHHHHcCCeeEEEcCCCCH--HHHHHHhhcCCceEEeeecCccc--------cchhhhHHHHHHHhCCcEE
Q 025707 140 PIEETIGEMKKLVEEGKIKYIGLSEASP--DTIRRAHAVHPITAVQLEWSLWA--------RDIENEIVPLCRELGIGIV 209 (249)
Q Consensus 140 ~~~~~~~~l~~l~~~G~ir~iGvs~~~~--~~l~~~~~~~~~~~~q~~~n~~~--------~~~~~~~~~~~~~~gi~v~ 209 (249)
+.+.+...++.|++.|- .+++.++.. ..+.. +...+++++-++-+++. +..-..+++.|+..|+.|+
T Consensus 531 ~~~~~~~~l~~L~~~G~--~iaiddfG~g~~s~~~-L~~l~~d~iKid~s~v~~i~~~~~~~~~v~sli~~a~~~~i~vi 607 (640)
T PRK11059 531 HISRLRPVLRMLRGLGC--RLAVDQAGLTVVSTSY-IKELNVELIKLHPSLVRNIHKRTENQLFVRSLVGACAGTETQVF 607 (640)
T ss_pred CHHHHHHHHHHHHHCCC--EEEEECCCCCcccHHH-HHhCCCCEEEECHHHHhhhhcCchhHHHHHHHHHHHHHCCCeEE
Confidence 45678888999999998 566655532 12222 23335676666544332 1112678999999999999
Q ss_pred eccc
Q 025707 210 PYCP 213 (249)
Q Consensus 210 a~sp 213 (249)
|-..
T Consensus 608 AegV 611 (640)
T PRK11059 608 ATGV 611 (640)
T ss_pred EEEe
Confidence 8664
No 387
>TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in E. coli, Buchnera, Yersinia, etc.
Probab=24.82 E-value=4.7e+02 Score=22.86 Aligned_cols=109 Identities=13% Similarity=0.068 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHHcCCCceeEEEeecCCCCCCHH-HHHHHHHHHHHcCCeeEEEcCC----CCHHH----HHHHhhcCC
Q 025707 108 PEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIE-ETIGEMKKLVEEGKIKYIGLSE----ASPDT----IRRAHAVHP 178 (249)
Q Consensus 108 ~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~-~~~~~l~~l~~~G~ir~iGvs~----~~~~~----l~~~~~~~~ 178 (249)
.+.+.+.++..-+..++ .-+.+-.-++....+ ...+.++.+..-..++.+|+.+ ..+.. +.+.+...+
T Consensus 127 ~~~~~~~i~~i~~~~~i---~~VvltGGEPL~~~d~~L~~ll~~l~~i~~~~~iri~tr~~~~~p~rit~el~~~L~~~~ 203 (321)
T TIGR03821 127 KAQWKEALEYIAQHPEI---NEVILSGGDPLMAKDHRLDWLLNLLEQIPHLKRLRIHTRLPVVIPDRITSGLCDLLANSR 203 (321)
T ss_pred HHHHHHHHHHHHhcCCC---CEEEEeCcccccCCchHHHHHHHHHHhCCCCcEEEEecCcceeeHHHhhHHHHHHHHhcC
Confidence 34444444443333333 334444433332222 2455566666667777777754 32222 222233334
Q ss_pred ceEE-eeecCcccc--chhhhHHHHHHHhCCcEEecccCccccc
Q 025707 179 ITAV-QLEWSLWAR--DIENEIVPLCRELGIGIVPYCPLGRGFF 219 (249)
Q Consensus 179 ~~~~-q~~~n~~~~--~~~~~~~~~~~~~gi~v~a~spl~~G~l 219 (249)
+..+ ++.+|-... ....+.++.+++.|+.+...+++..|.-
T Consensus 204 ~~~~~~~h~dh~~Ei~d~~~~ai~~L~~~Gi~v~~qtvllkgiN 247 (321)
T TIGR03821 204 LQTVLVVHINHANEIDAEVADALAKLRNAGITLLNQSVLLRGVN 247 (321)
T ss_pred CcEEEEeeCCChHhCcHHHHHHHHHHHHcCCEEEecceeeCCCC
Confidence 4443 445553211 1226788889999999999999988843
No 388
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=24.82 E-value=4.3e+02 Score=22.36 Aligned_cols=72 Identities=19% Similarity=0.207 Sum_probs=42.4
Q ss_pred HHHHHHHHHHcCCCeEeC-CCCcCC--------------CchHHHHHHHHHcCCCCCeEEEecccccccCCcccccCCCH
Q 025707 44 GISIIKHAFSKGITFFDT-ADKYGP--------------YTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTP 108 (249)
Q Consensus 44 ~~~~l~~A~~~Gi~~~Dt-a~~Yg~--------------g~se~~lg~~l~~~~r~~~~I~tK~~~~~~~~~~~~~~~s~ 108 (249)
+.++.+...+.|+.++=+ +..|+. .-....+.+.+++..-+-++=+|.- -.
T Consensus 12 gr~la~~L~~~g~~v~~s~~t~~~~~~~~~~g~~~v~~g~l~~~~l~~~l~~~~i~~VIDAtHP--------------fA 77 (256)
T TIGR00715 12 SRAIAKGLIAQGIEILVTVTTSEGKHLYPIHQALTVHTGALDPQELREFLKRHSIDILVDATHP--------------FA 77 (256)
T ss_pred HHHHHHHHHhCCCeEEEEEccCCccccccccCCceEEECCCCHHHHHHHHHhcCCCEEEEcCCH--------------HH
Confidence 888888888899877643 334431 1112224444442111222222211 14
Q ss_pred HHHHHHHHHHHHHcCCCceeE
Q 025707 109 EYVRSCCEASLRRLDVEYIDL 129 (249)
Q Consensus 109 ~~i~~~~~~sL~~Lg~d~iDl 129 (249)
..+.+.+.+.++.+|+.|+.+
T Consensus 78 ~~is~~a~~a~~~~~ipylR~ 98 (256)
T TIGR00715 78 AQITTNATAVCKELGIPYVRF 98 (256)
T ss_pred HHHHHHHHHHHHHhCCcEEEE
Confidence 578899999999999999887
No 389
>TIGR02133 RPI_actino ribose 5-phosphate isomerase. This family is a member of the RpiB/LacA/LacB subfamily (TIGR00689) but lies outside the RpiB equivalog (TIGR01120) which is also a member of that subfamily. Ribose 5-phosphate isomerase is an essential enzyme of the pentose phosphate pathway; a pathway that appears to be present in the actinobacteria. The only candidates for ribose 5-phosphate isomerase in the Actinobacteria are members of this family.
Probab=24.81 E-value=3.3e+02 Score=21.03 Aligned_cols=100 Identities=11% Similarity=-0.104 Sum_probs=66.5
Q ss_pred CCHHHHHHHHHHHHHHcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCCe-eEEEcCCCCHHHHHHHhhcCCceEEee
Q 025707 106 GTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKI-KYIGLSEASPDTIRRAHAVHPITAVQL 184 (249)
Q Consensus 106 ~s~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~i-r~iGvs~~~~~~l~~~~~~~~~~~~q~ 184 (249)
+.--.+++.+.+-|+..|.+.+|+= -+..++..+..+....+.+.+.+|.. +.|.+|....-.-..+.+...+.+.++
T Consensus 9 haG~~lK~~l~~~L~~~g~eV~D~G-~~~~~~~~dYpd~a~~va~~V~~~~~~~GIliCGtGiG~siaANK~~GiRAA~~ 87 (148)
T TIGR02133 9 HAGFEYKEALWLDLAAHEPEVCDVG-VYDADDDDDYPCFCIAAAEAVARDAADLGIVIGGSGNGEAIAANKVKGARAALA 87 (148)
T ss_pred chhHHHHHHHHHHHHHCCCEEEECC-CCCCCCCCCchHHHHHHHHHHhcCCCceEEEEcCCChhheeeecccCCeEEEEE
Confidence 4456788999999999998888853 22223234567778888888888887 788888887655444445555665555
Q ss_pred ecCccccchhhhHHHHHHHh-CCcEEecccC
Q 025707 185 EWSLWARDIENEIVPLCREL-GIGIVPYCPL 214 (249)
Q Consensus 185 ~~n~~~~~~~~~~~~~~~~~-gi~v~a~spl 214 (249)
. +......+++| +..|++.+.-
T Consensus 88 ~--------d~~sA~~ar~hNnaNVl~lG~r 110 (148)
T TIGR02133 88 W--------DTASAGRARLHNNANVVGAGMR 110 (148)
T ss_pred C--------CHHHHHHHHHHcCCcEEEECCc
Confidence 2 23455566655 7777776543
No 390
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=24.77 E-value=4e+02 Score=22.06 Aligned_cols=49 Identities=12% Similarity=0.191 Sum_probs=34.1
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCCCCcCCCchHHHHHHHHHcC--CCCCeEEEe
Q 025707 40 SEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKEL--PRENIQVAT 90 (249)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~g~se~~lg~~l~~~--~r~~~~I~t 90 (249)
+.+++.++.+..++.||+.++.+..-. .+.+.+.+..+.. ...++.|..
T Consensus 25 ~~~~a~~~~~al~~gGi~~iEiT~~tp--~a~~~i~~l~~~~~~~~p~~~vGa 75 (222)
T PRK07114 25 DVEVAKKVIKACYDGGARVFEFTNRGD--FAHEVFAELVKYAAKELPGMILGV 75 (222)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCCC--cHHHHHHHHHHHHHhhCCCeEEee
Confidence 789999999999999999999876544 4666664443221 123565543
No 391
>PRK14470 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=24.73 E-value=4.9e+02 Score=23.02 Aligned_cols=87 Identities=11% Similarity=0.076 Sum_probs=52.8
Q ss_pred EEEeecCCCC-----------CCHHHHHHHHHHHHHcCC---eeEEEcC--CCCHHHHHHHhh---cCCceEEeeecCcc
Q 025707 129 LYYQHRVDTS-----------VPIEETIGEMKKLVEEGK---IKYIGLS--EASPDTIRRAHA---VHPITAVQLEWSLW 189 (249)
Q Consensus 129 l~~lh~~~~~-----------~~~~~~~~~l~~l~~~G~---ir~iGvs--~~~~~~l~~~~~---~~~~~~~q~~~n~~ 189 (249)
.+.||.++++ .+++++++++..+.+.++ ++++=+. |.+.+.++++.+ ..+..++-++||+.
T Consensus 207 aiSLhA~~~e~r~~I~p~~~~~~le~il~ai~~~~~~~rri~ieyvLI~GvNDseeda~~La~llk~l~~~vnlI~~N~~ 286 (336)
T PRK14470 207 CISLNAAIPWKRRALMPIEQGFPLDELVEAIREHAALRGRVTLEYVMISGVNVGEEDAAALGRLLAGIPVRLNPIAVNDA 286 (336)
T ss_pred EEecCCCCHHHHHHhcCccccCCHHHHHHHHHHHHHhCCCeEEEEEEEecccCCHHHHHHHHHHHhcCCCeEEEeccCCC
Confidence 3566887553 357788888888877643 2444333 334555554443 34567888899985
Q ss_pred ccc----hh---hhHHHHH--HHhCCcEEecccCc
Q 025707 190 ARD----IE---NEIVPLC--RELGIGIVPYCPLG 215 (249)
Q Consensus 190 ~~~----~~---~~~~~~~--~~~gi~v~a~spl~ 215 (249)
.+. .. ....+.. +++|+.+......+
T Consensus 287 ~~~~~~p~~~~i~~f~~~l~~~~~g~~~~~R~~~G 321 (336)
T PRK14470 287 TGRYRPPDEDEWNAFRDALARELPGTPVVRRYSGG 321 (336)
T ss_pred CCCccCCCHHHHHHHHHHHHHccCCeEEEEECCCC
Confidence 432 11 4455555 35688888777654
No 392
>COG5310 Homospermidine synthase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=24.68 E-value=5.1e+02 Score=23.22 Aligned_cols=168 Identities=15% Similarity=0.124 Sum_probs=86.8
Q ss_pred CcccCcceeecccccCC--------CCC----CCCHHHHHHHHHHHHHcCCCeEeCCCCcCCCchHHHHHHHHHcCCCCC
Q 025707 18 GLEVSKLGYGCMSLSGC--------YNS----PLSEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELPREN 85 (249)
Q Consensus 18 g~~vs~lg~Gt~~~~~~--------~~~----~~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~g~se~~lg~~l~~~~r~~ 85 (249)
.-.|-.||||..+-|.. +.. .++..+ +..+..-+.||||+-.+-.-. .-..+|+..|+.....-
T Consensus 13 tgpIimIGfGSigrgTLPLierhf~~d~~~~~viDp~e--k~~k~~~~~girfV~e~it~~--Nyk~vL~pll~~~~gqg 88 (481)
T COG5310 13 TGPIIMIGFGSIGRGTLPLIERHFKFDRSRMVVIDPRE--KDRKILDERGIRFVQEAITRD--NYKDVLKPLLKGVGGQG 88 (481)
T ss_pred cCcEEEEeecccccccchhHHHhcCCChhheEEechhH--HHHHHHHhhhhHHHHHhcChh--hHHHHHHHHhhcCCCce
Confidence 44567889987654431 111 123333 555556688999997664322 22356666666543444
Q ss_pred eEEEecccccccCCcccccCCCHHHHHHHHHHHHHHcCCCceeEEEeecCCCCCCH-----HHHHHHHHHHHHc------
Q 025707 86 IQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPI-----EETIGEMKKLVEE------ 154 (249)
Q Consensus 86 ~~I~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~-----~~~~~~l~~l~~~------ 154 (249)
+.|---+ +.+ .-.+-+.++++|+=|||-+.=-|.....+. .+.=-+|++.+-+
T Consensus 89 f~vnLSv------------d~~----s~Dlmr~crk~~vLYidTvVEpW~gfyfDa~adn~artnyaLRet~lrEk~r~p 152 (481)
T COG5310 89 FCVNLSV------------DTS----SLDLMRLCRKHGVLYIDTVVEPWLGFYFDAQADNAARTNYALRETVLREKRRNP 152 (481)
T ss_pred EEEEeEe------------ccc----hhHHHHHHHHcCeEEEeeeeccccccchhhhhhhhhhhhHHHHHHHHHHhccCC
Confidence 4432211 111 233567788999999999887777443322 2233344444433
Q ss_pred CCeeEEEcCCCCHHHHHHHhh--------cCCceEEeeecCccccchhhhHHHHHHHhCCcEEe
Q 025707 155 GKIKYIGLSEASPDTIRRAHA--------VHPITAVQLEWSLWARDIENEIVPLCRELGIGIVP 210 (249)
Q Consensus 155 G~ir~iGvs~~~~~~l~~~~~--------~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a 210 (249)
|--.++--+..++..+-...+ ....+ +..=.++..++....+++.|+..|-
T Consensus 153 gg~TaVs~cGANPGmvswFVKqaLvdlAad~~ld-----~~ep~~ddr~gwAkLmkK~GVkgiH 211 (481)
T COG5310 153 GGPTAVSTCGANPGMVSWFVKQALVDLAADLGLD-----FEEPAQDDREGWAKLMKKAGVKGIH 211 (481)
T ss_pred CCCeeeeecCCCchHHHHHHHHHHHHHHHHhCcC-----ccCCcchhhHHHHHHHHHcCCceEE
Confidence 334444444555533322221 11111 1111122236788888888887764
No 393
>PF03599 CdhD: CO dehydrogenase/acetyl-CoA synthase delta subunit; InterPro: IPR016041 This entry represents a conserved region predicted to form a TIM alpha/beta barrel, and is found in the delta subunit of a number of CO dehydrogenase/acetyl-CoA synthase enzymes.; PDB: 2H9A_B 2YCL_B 4DJF_E 4DJD_C 4DJE_C.
Probab=24.63 E-value=4.3e+02 Score=23.99 Aligned_cols=85 Identities=15% Similarity=0.207 Sum_probs=42.8
Q ss_pred ceeEEEeecCCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCCHHHHHHHhhcCC-ceEEeeecCccccchhhhHHHHHHHh
Q 025707 126 YIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAVHP-ITAVQLEWSLWARDIENEIVPLCREL 204 (249)
Q Consensus 126 ~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~-~~~~q~~~n~~~~~~~~~~~~~~~~~ 204 (249)
.+|++.++..+... .++..+..++..+.-.+ -+=+...+++.++++++... -.+.- |..-..+ -+.+.+.|+++
T Consensus 69 ~~D~Ialr~~S~DP-ae~fa~~vk~V~~a~~~-PLIL~~~D~evl~aale~~~~~kpLL--~aAt~eN-yk~m~~lA~~y 143 (386)
T PF03599_consen 69 GADMIALRLESGDP-AEEFAKAVKKVAEAVDV-PLILCGCDPEVLKAALEACAGKKPLL--YAATEEN-YKAMAALAKEY 143 (386)
T ss_dssp E-SEEEEE-GGGST-HHHHHHHHHHHHHC-SS-EEEEESSHHHHHHHHHHHTTTS--EE--EEEBTTT-HHHHHHHHHHC
T ss_pred cccEEEEEecCCCh-HHHHHHHHHHHHHhcCC-CEEEEeCCHHHHHHHHHHhCcCCcEE--eEcCHHH-HHHHHHHHHHc
Confidence 67788887654332 45555555555554333 33333347777777766521 00000 0110111 16788888888
Q ss_pred CCcEEecccCc
Q 025707 205 GIGIVPYCPLG 215 (249)
Q Consensus 205 gi~v~a~spl~ 215 (249)
|.++++.+|..
T Consensus 144 ~~pl~v~sp~D 154 (386)
T PF03599_consen 144 GHPLIVSSPID 154 (386)
T ss_dssp T-EEEEE-SSC
T ss_pred CCeEEEEeccc
Confidence 88888888754
No 394
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=24.59 E-value=1.3e+02 Score=23.11 Aligned_cols=24 Identities=21% Similarity=0.225 Sum_probs=14.6
Q ss_pred hhHHHHHHHhCCcEEecccCcccccC
Q 025707 195 NEIVPLCRELGIGIVPYCPLGRGFFG 220 (249)
Q Consensus 195 ~~~~~~~~~~gi~v~a~spl~~G~l~ 220 (249)
.++++.|++.|+.-+. .+.+|.+.
T Consensus 81 ~~lve~lre~G~~~i~--v~~GGvip 104 (143)
T COG2185 81 PGLVEALREAGVEDIL--VVVGGVIP 104 (143)
T ss_pred HHHHHHHHHhCCcceE--EeecCccC
Confidence 6677777777766555 44555443
No 395
>PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=24.58 E-value=4e+02 Score=24.31 Aligned_cols=57 Identities=11% Similarity=0.087 Sum_probs=36.4
Q ss_pred cCCCCHHHHHHHhhc-CCceEEeeecCccccch-hhhHHHHHHHhCCcEEecccCcccc
Q 025707 162 LSEASPDTIRRAHAV-HPITAVQLEWSLWARDI-ENEIVPLCRELGIGIVPYCPLGRGF 218 (249)
Q Consensus 162 vs~~~~~~l~~~~~~-~~~~~~q~~~n~~~~~~-~~~~~~~~~~~gi~v~a~spl~~G~ 218 (249)
+...+++.+++++.. .++.++..+.|+.-... ..++.+.|+++|+.++.=...+.|.
T Consensus 133 vd~~d~~~l~~ai~~~tklV~vesp~NptG~v~dl~~I~~la~~~gi~livD~a~a~~~ 191 (427)
T PRK05994 133 ADADDPASFERAITPRTKAIFIESIANPGGTVTDIAAIAEVAHRAGLPLIVDNTLASPY 191 (427)
T ss_pred ECCCCHHHHHHhcCcCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCccccc
Confidence 333466777776643 44555656666543222 3789999999999998766655443
No 396
>PRK14464 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=24.54 E-value=5.1e+02 Score=23.10 Aligned_cols=84 Identities=11% Similarity=0.072 Sum_probs=54.7
Q ss_pred CCHHHHHHHHHHHHHc-CC---eeEEEc--CCCCHHHHHHHhhc---CCceEEeeecCccccc-----hh---hhHHHHH
Q 025707 139 VPIEETIGEMKKLVEE-GK---IKYIGL--SEASPDTIRRAHAV---HPITAVQLEWSLWARD-----IE---NEIVPLC 201 (249)
Q Consensus 139 ~~~~~~~~~l~~l~~~-G~---ir~iGv--s~~~~~~l~~~~~~---~~~~~~q~~~n~~~~~-----~~---~~~~~~~ 201 (249)
.+++++.+++.++.+. |. +-++=+ -|-+++.+.++.+. .++.++-++||+.... .. ..+.+..
T Consensus 223 ~~l~el~~a~~~~~~~~grri~~EyvLl~GVNDs~e~a~~L~~~l~~~~~~vNLIPyN~v~g~~~~rp~~~~i~~f~~~L 302 (344)
T PRK14464 223 IAPEELVELGEAYARATGYPIQYQWTLLEGVNDSDEEMDGIVRLLKGKYAVMNLIPYNSVDGDAYRRPSGERIVAMARYL 302 (344)
T ss_pred CCHHHHHHHHHHHHHHHCCEEEEEEEEeCCCCCCHHHHHHHHHHHhccccccceecCCccCCCCccCCCHHHHHHHHHHH
Confidence 4678888888777544 42 233322 25666666665554 4567888899886531 11 5677778
Q ss_pred HHhCCcEEecccC------cccccCCC
Q 025707 202 RELGIGIVPYCPL------GRGFFGGK 222 (249)
Q Consensus 202 ~~~gi~v~a~spl------~~G~l~g~ 222 (249)
+++||.+...... ++|.|..+
T Consensus 303 ~~~gi~~tiR~~~G~di~aACGqL~~~ 329 (344)
T PRK14464 303 HRRGVLTKVRNSAGQDVDGGCGQLRAR 329 (344)
T ss_pred HHCCceEEEECCCCCchhhcCcchhhh
Confidence 8899999988886 45666655
No 397
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=24.47 E-value=1.2e+02 Score=26.29 Aligned_cols=49 Identities=22% Similarity=0.205 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHcCCCcee--EEEeecCCCCCCHHHHHHHHHHHHHcCCeeE
Q 025707 108 PEYVRSCCEASLRRLDVEYID--LYYQHRVDTSVPIEETIGEMKKLVEEGKIKY 159 (249)
Q Consensus 108 ~~~i~~~~~~sL~~Lg~d~iD--l~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~ 159 (249)
.+...+.+.+.+++||+.+ | .+..-. .....+.+.+.+.+|.++|.|-.
T Consensus 81 ~~~~~~~~~~~l~~lgI~~-Dw~~~~~T~--~~~~~~~v~~~f~~L~~~G~iY~ 131 (312)
T cd00668 81 VEEMSGEHKEDFRRLGISY-DWSDEYITT--EPEYSKAVELIFSRLYEKGLIYR 131 (312)
T ss_pred HHHHHHHHHHHHHHhCccc-cCCCCeECC--CHHHHHHHHHHHHHHHHCCCEEe
Confidence 4667888999999999844 4 222211 22346789999999999999865
No 398
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=24.39 E-value=4.4e+02 Score=22.37 Aligned_cols=81 Identities=17% Similarity=0.032 Sum_probs=42.1
Q ss_pred CHHHHHHHHHHHHHcCCCeE---eCCCCcCCCchHHHHHHHHHc---CCCCCeEEEecccccccCCcccccCCCHHHHHH
Q 025707 40 SEEDGISIIKHAFSKGITFF---DTADKYGPYTNEILLGKALKE---LPRENIQVATKFGFVELGFTSVIVKGTPEYVRS 113 (249)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~---Dta~~Yg~g~se~~lg~~l~~---~~r~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~ 113 (249)
+.+.+.+.++.|.+.|+.+. +++.... ...+.+.+..+. ..-+.+.|.--.|. .+|+.+.+
T Consensus 116 ~~~~~~~~i~~ak~~G~~v~~~i~~~~~~~--~~~~~~~~~~~~~~~~Ga~~i~l~DT~G~-----------~~P~~v~~ 182 (275)
T cd07937 116 DVRNLEVAIKAVKKAGKHVEGAICYTGSPV--HTLEYYVKLAKELEDMGADSICIKDMAGL-----------LTPYAAYE 182 (275)
T ss_pred hHHHHHHHHHHHHHCCCeEEEEEEecCCCC--CCHHHHHHHHHHHHHcCCCEEEEcCCCCC-----------CCHHHHHH
Confidence 45666667777777775432 3222211 123333333222 34555666555543 34777777
Q ss_pred HHHHHHHHcCCCceeEEEeecCCC
Q 025707 114 CCEASLRRLDVEYIDLYYQHRVDT 137 (249)
Q Consensus 114 ~~~~sL~~Lg~d~iDl~~lh~~~~ 137 (249)
-+....+++++ . +-+|..++
T Consensus 183 lv~~l~~~~~~---~-l~~H~Hnd 202 (275)
T cd07937 183 LVKALKKEVGL---P-IHLHTHDT 202 (275)
T ss_pred HHHHHHHhCCC---e-EEEEecCC
Confidence 77777777762 2 44666655
No 399
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=24.32 E-value=3.2e+02 Score=20.70 Aligned_cols=114 Identities=18% Similarity=0.189 Sum_probs=66.3
Q ss_pred CHHHHHHHHHHHH-HcCCCeEeCCCCcCCCchHHHHHHHHHcCCCCCeEEEecccccccCCcccccCCCHHHHHHHHHHH
Q 025707 40 SEEDGISIIKHAF-SKGITFFDTADKYGPYTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEAS 118 (249)
Q Consensus 40 ~~~~~~~~l~~A~-~~Gi~~~Dta~~Yg~g~se~~lg~~l~~~~r~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~~~~s 118 (249)
-.+..+.++..++ ++|+..+|....= ..|+.+..+.+. .-+=+-+|+-.+.. .. ..+.+.+.
T Consensus 13 ~HdiGk~iv~~~l~~~GfeVi~LG~~v---~~e~~v~aa~~~-~adiVglS~l~~~~------------~~-~~~~~~~~ 75 (134)
T TIGR01501 13 CHAVGNKILDHAFTNAGFNVVNLGVLS---PQEEFIKAAIET-KADAILVSSLYGHG------------EI-DCKGLRQK 75 (134)
T ss_pred hhhHhHHHHHHHHHHCCCEEEECCCCC---CHHHHHHHHHHc-CCCEEEEecccccC------------HH-HHHHHHHH
Confidence 3677888888888 5699999998765 489999888873 44555566654422 22 34556666
Q ss_pred HHHcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCCHHHHHHH
Q 025707 119 LRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRA 173 (249)
Q Consensus 119 L~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~ 173 (249)
|+.-|.+.+ .+++-.. ...+-++.-+.-++|++.|--+-+|=++ +++.+...
T Consensus 76 l~~~gl~~~-~vivGG~-~vi~~~d~~~~~~~l~~~Gv~~vF~pgt-~~~~iv~~ 127 (134)
T TIGR01501 76 CDEAGLEGI-LLYVGGN-LVVGKQDFPDVEKRFKEMGFDRVFAPGT-PPEVVIAD 127 (134)
T ss_pred HHHCCCCCC-EEEecCC-cCcChhhhHHHHHHHHHcCCCEEECcCC-CHHHHHHH
Confidence 777877543 2344331 1111122222234677788444444433 55554443
No 400
>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=24.30 E-value=4.5e+02 Score=24.06 Aligned_cols=54 Identities=9% Similarity=0.028 Sum_probs=36.6
Q ss_pred CHHHHHHHhhc-CCceEEeeecCccccch-hhhHHHHHHHhCCcEEecccCccccc
Q 025707 166 SPDTIRRAHAV-HPITAVQLEWSLWARDI-ENEIVPLCRELGIGIVPYCPLGRGFF 219 (249)
Q Consensus 166 ~~~~l~~~~~~-~~~~~~q~~~n~~~~~~-~~~~~~~~~~~gi~v~a~spl~~G~l 219 (249)
+++.+++++.. .+..++...-|+.-.-. -.++.+.|+++|+.++.=..++.|.+
T Consensus 138 d~~~l~~~i~~~TklV~~e~~~np~g~v~Di~~I~~la~~~gi~livD~t~a~~~~ 193 (433)
T PRK08134 138 DIDGWRAAIRPNTRLLFGETLGNPGLEVLDIPTVAAIAHEAGVPLLVDSTFTTPYL 193 (433)
T ss_pred CHHHHHHhcCCCCeEEEEECCCcccCcccCHHHHHHHHHHcCCEEEEECCCccccc
Confidence 67888887653 44555555555532222 27899999999999998777766654
No 401
>PHA01346 hypothetical protein
Probab=24.22 E-value=81 Score=18.85 Aligned_cols=22 Identities=18% Similarity=0.129 Sum_probs=18.8
Q ss_pred ccCCCHHHHHHHHHHHHHHcCC
Q 025707 103 IVKGTPEYVRSCCEASLRRLDV 124 (249)
Q Consensus 103 ~~~~s~~~i~~~~~~sL~~Lg~ 124 (249)
.++++.+.|...++..|++|..
T Consensus 29 dpdfsqekihaeldsllrklsr 50 (53)
T PHA01346 29 DPDFSQEKIHAELDSLLRKLSR 50 (53)
T ss_pred CCCccHHHHHHHHHHHHHHHHh
Confidence 4578899999999999999864
No 402
>TIGR03858 LLM_2I7G probable oxidoreductase, LLM family. This model describes a highly conserved, somewhat broadly distributed family withing the luciferase-like monooxygenase (LLM) superfamily. Most members are from species incapable of synthesizing coenzyme F420, bound by some members of the LLM superfamily. Members, therefore, are more likely to use FMN as a cofactor.
Probab=24.21 E-value=2.2e+02 Score=24.95 Aligned_cols=45 Identities=20% Similarity=0.300 Sum_probs=29.2
Q ss_pred CCHHHHHHHHHHHHHHcCCCceeEEEeecCCCCCCHHHHHHHHHHHHH
Q 025707 106 GTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVE 153 (249)
Q Consensus 106 ~s~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~ 153 (249)
.+|+.+.+.|++..+.+|++++ +++.+....+.++.++.++.+.+
T Consensus 286 GtPe~V~e~i~~~~~~~G~d~~---~l~~~~~~~~~~~~~~~i~~fa~ 330 (337)
T TIGR03858 286 GSPETVAEKIADTIETLGLDRF---MLHYSVGSLPHEQVMRAIELYGT 330 (337)
T ss_pred eCHHHHHHHHHHHHHHcCCCeE---EEEecCCCCCHHHHHHHHHHHhc
Confidence 4789999999988888888764 44433333445555666655443
No 403
>cd08206 RuBisCO_large_I_II_III Ribulose bisphosphate carboxylase large chain, Form I,II,III. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubico-like proteins (RLP), are missing critical active site residues.
Probab=24.03 E-value=5.7e+02 Score=23.48 Aligned_cols=20 Identities=20% Similarity=0.413 Sum_probs=16.0
Q ss_pred CHHHHHHHHHHHHHcCCCeE
Q 025707 40 SEEDGISIIKHAFSKGITFF 59 (249)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~ 59 (249)
+.++..++.......|+.++
T Consensus 146 sp~~~a~~~y~~~~GGiD~I 165 (414)
T cd08206 146 SPKEYARVVYEALRGGLDFV 165 (414)
T ss_pred CHHHHHHHHHHHHhcCCccc
Confidence 67778888888888888776
No 404
>TIGR01120 rpiB ribose 5-phosphate isomerase B. Involved in the non-oxidative branch of the pentose phospate pathway.
Probab=23.99 E-value=3.4e+02 Score=20.87 Aligned_cols=97 Identities=13% Similarity=0.019 Sum_probs=68.8
Q ss_pred CCHHHHHHHHHHHHHHcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCCe-eEEEcCCCCHHHHHHHhhcCCceEEee
Q 025707 106 GTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKI-KYIGLSEASPDTIRRAHAVHPITAVQL 184 (249)
Q Consensus 106 ~s~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~i-r~iGvs~~~~~~l~~~~~~~~~~~~q~ 184 (249)
+.--.+++.+.+-|+..|.+.+|+=- +. ++..+..+....+.+.+.+|.. +.|-+|....-.-..+.+...+.+.++
T Consensus 8 haG~~lK~~l~~~L~~~g~eV~D~G~-~~-~~~~dYpd~a~~va~~V~~~~~~~GIliCGtGiG~siaANK~~GIraa~~ 85 (143)
T TIGR01120 8 HAGFILKEEIKAFLVERGVKVIDKGT-WS-SERTDYPHYAKQVALAVAGGEVDGGILICGTGIGMSIAANKFAGIRAALC 85 (143)
T ss_pred cchHHHHHHHHHHHHHCCCEEEEeCC-CC-CCCCCHHHHHHHHHHHHHCCCCceEEEEcCCcHHHHHHHhcCCCeEEEEE
Confidence 44567899999999999998888653 33 3346777888888888888877 788888888766666666666666655
Q ss_pred ecCccccchhhhHHHHHHHh-CCcEEecc
Q 025707 185 EWSLWARDIENEIVPLCREL-GIGIVPYC 212 (249)
Q Consensus 185 ~~n~~~~~~~~~~~~~~~~~-gi~v~a~s 212 (249)
. +......+++| +..|++.+
T Consensus 86 ~--------d~~~A~~ar~hNnaNvl~lG 106 (143)
T TIGR01120 86 S--------EPYMAQMSRLHNDANVLCLG 106 (143)
T ss_pred C--------CHHHHHHHHHhcCCcEEEEC
Confidence 2 13344455544 77777765
No 405
>cd08620 PI-PLCXDc_like_1 Catalytic domain of uncharacterized hypothetical proteins similar to eukaryotic phosphatidylinositol-specific phospholipase C, X domain containing proteins. This subfamily corresponds to the catalytic domain present in a group of uncharacterized hypothetical proteins found in bacteria and fungi, which are similar to eukaryotic phosphatidylinositol-specific phospholipase C, X domain containing proteins (PI-PLCXD). The typical eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) has a multidomain organization that consists of a PLC catalytic core domain, and various regulatory domains. The catalytic core domain is assembled from two highly conserved X- and Y-regions split by a divergent linker sequence. In contrast, eukaryotic PI-PLCXDs contain a single TIM-barrel type catalytic domain, X domain, and are more closely related to bacterial PI-PLCs, which participate in Ca2+-independent PI metabolism, hydrolyzing the membrane lipid phosphatidyl
Probab=23.92 E-value=3.2e+02 Score=23.53 Aligned_cols=20 Identities=20% Similarity=0.451 Sum_probs=14.1
Q ss_pred HHHHHHHHcCCCeEeCCCCc
Q 025707 46 SIIKHAFSKGITFFDTADKY 65 (249)
Q Consensus 46 ~~l~~A~~~Gi~~~Dta~~Y 65 (249)
.-+..=++.|||+||--..|
T Consensus 34 ~~i~~QL~~GiRyfDlRv~~ 53 (281)
T cd08620 34 DNVSTQLALGARYFDFRPGY 53 (281)
T ss_pred ccHHHHHhcCcEEEEEEeee
Confidence 34556678999999975443
No 406
>PRK09389 (R)-citramalate synthase; Provisional
Probab=23.86 E-value=6.1e+02 Score=23.76 Aligned_cols=26 Identities=15% Similarity=0.355 Sum_probs=22.5
Q ss_pred CCCHHHHHHHHHHHHHcCCCeEeCCC
Q 025707 38 PLSEEDGISIIKHAFSKGITFFDTAD 63 (249)
Q Consensus 38 ~~~~~~~~~~l~~A~~~Gi~~~Dta~ 63 (249)
..+.++-.++.+...++||..|+...
T Consensus 20 ~~s~e~K~~ia~~L~~~Gv~~IE~G~ 45 (488)
T PRK09389 20 SLTPEEKLEIARKLDELGVDVIEAGS 45 (488)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEEeC
Confidence 35789999999999999999999863
No 407
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=23.75 E-value=2.6e+02 Score=20.44 Aligned_cols=17 Identities=35% Similarity=0.694 Sum_probs=11.9
Q ss_pred hhHHHHHHHhCCcEEec
Q 025707 195 NEIVPLCRELGIGIVPY 211 (249)
Q Consensus 195 ~~~~~~~~~~gi~v~a~ 211 (249)
++++++|.+++++++..
T Consensus 89 ~~~i~~A~~~~lPli~i 105 (123)
T PF07905_consen 89 EEIIELADELGLPLIEI 105 (123)
T ss_pred HHHHHHHHHcCCCEEEe
Confidence 66777777777777654
No 408
>PTZ00402 glutamyl-tRNA synthetase; Provisional
Probab=23.43 E-value=4.2e+02 Score=25.64 Aligned_cols=61 Identities=13% Similarity=0.183 Sum_probs=44.4
Q ss_pred CHHHHHHHHHHHHHHcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCCHHHHHHHh
Q 025707 107 TPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAH 174 (249)
Q Consensus 107 s~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~ 174 (249)
......+++.+.|+.||+++ |--..+ .+..++...+++++|.++|+ ++ +|..+.+++++.-
T Consensus 99 ~~~e~~d~IleDL~WLGl~w-De~~~~---QSdr~d~y~e~a~~Li~~G~--AY-~c~cs~eei~~~r 159 (601)
T PTZ00402 99 EKEHFEQAILDDLATLGVSW-DVGPTY---SSDYMDLMYEKAEELIKKGL--AY-CDKTPREEMQKCR 159 (601)
T ss_pred cCHHHHHHHHHHHHHCCCCC-CCceee---ccccHHHHHHHHHHHHHcCC--EE-EecCCHHHHHHHH
Confidence 45677899999999999864 310011 23457888999999999999 45 7778888876653
No 409
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=23.27 E-value=2.3e+02 Score=27.19 Aligned_cols=55 Identities=22% Similarity=0.161 Sum_probs=39.1
Q ss_pred CchHHHHHHHHHc-CCCCCeEEEecccccccCCcccccCCCHHHHHHHHHHHHHHc-CCCceeEEEeecCCCC
Q 025707 68 YTNEILLGKALKE-LPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRL-DVEYIDLYYQHRVDTS 138 (249)
Q Consensus 68 g~se~~lg~~l~~-~~r~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~~L-g~d~iDl~~lh~~~~~ 138 (249)
|-+-+.++++|.+ .+|+++.|.-=.. .+ ++-+..||+|| |+.|+.=+.+-|-+..
T Consensus 632 gGsGkEF~~aLGGN~pREQFTvVmLTY-------------ER---e~VLm~sLeRL~gLPYLnKvvVVWNspk 688 (907)
T KOG2264|consen 632 GGSGKEFSKALGGNRPREQFTVVMLTY-------------ER---EAVLMGSLERLHGLPYLNKVVVVWNSPK 688 (907)
T ss_pred CCchHHHHHHhcCCCccceEEEEEEEe-------------hH---HHHHHHHHHHhhCCcccceEEEEeCCCC
Confidence 4577888999977 6889887765322 12 34478899998 5789988887765443
No 410
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases. Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=23.24 E-value=1.4e+02 Score=26.04 Aligned_cols=50 Identities=20% Similarity=0.102 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCCee
Q 025707 108 PEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIK 158 (249)
Q Consensus 108 ~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir 158 (249)
.+...+.+.+.+++||+. +|....-........+-+.+.+.+|.++|.|-
T Consensus 68 ~~~~~~~~~~~~~~lgi~-~d~~~~~~t~~~~~~~~v~~~f~~L~~~G~iy 117 (314)
T cd00812 68 TEYNIKKMKEQLKRMGFS-YDWRREFTTCDPEYYKFTQWLFLKLYEKGLAY 117 (314)
T ss_pred HHHHHHHHHHHHHHhccc-eecccccccCCHHHHHHHHHHHHHHHHCCCEE
Confidence 466788899999999984 57422211122233455677888999999884
No 411
>PRK12773 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=23.20 E-value=26 Score=33.58 Aligned_cols=42 Identities=21% Similarity=0.273 Sum_probs=35.3
Q ss_pred hhHHHHHHHhCCcEEecccCcccccCCCCCCCCCCCCccccc
Q 025707 195 NEIVPLCRELGIGIVPYCPLGRGFFGGKAVVESVPLDSFLVC 236 (249)
Q Consensus 195 ~~~~~~~~~~gi~v~a~spl~~G~l~g~~~~~~~~~~~~~~~ 236 (249)
..+.+.|+++||+++-.-|||+.+.-.-...+.+|++.+.+.
T Consensus 591 lrIReiAeE~gVPIVENpPLARALY~~veVGq~IP~eLYeAV 632 (646)
T PRK12773 591 LLIIRIARENGVPTVEDRLQARGLYEEVELGAEVPQQFYRAI 632 (646)
T ss_pred HHHHHHHHHcCCcEEECHHHHHHHHHcCCCCCcCCHHHHHHH
Confidence 779999999999999999999999876656677887766654
No 412
>PRK14476 nitrogenase molybdenum-cofactor biosynthesis protein NifN; Provisional
Probab=23.20 E-value=6e+02 Score=23.47 Aligned_cols=104 Identities=12% Similarity=0.107 Sum_probs=56.1
Q ss_pred CCcCCCchHHHHHHHHHc----CCCCCeEEEecccccccCCcccccCCCHHHHHHHHHHHHHHcCCC-----ceeEEEee
Q 025707 63 DKYGPYTNEILLGKALKE----LPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLDVE-----YIDLYYQH 133 (249)
Q Consensus 63 ~~Yg~g~se~~lg~~l~~----~~r~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~~Lg~d-----~iDl~~lh 133 (249)
-.|| .|+-|-+++++ .+.+=++|.|-.- ++-|=..++...+++.-+ .+.++.++
T Consensus 72 ~VfG---g~~~L~~aI~~~~~~~~P~~I~V~ttC~--------------~eiIGDDi~~v~~~~~~~~p~~~~~pvi~v~ 134 (455)
T PRK14476 72 TILG---GDENVEEAILNICKKAKPKIIGLCTTGL--------------TETRGDDVAGALKEIRARHPELADTPIVYVS 134 (455)
T ss_pred eEeC---CHHHHHHHHHHHHHhhCCCEEEEeCcch--------------HhhhhccHHHHHHHHHhhccccCCCeEEEec
Confidence 4677 67777777776 2334455554322 233333344444444322 35788888
Q ss_pred cCCCCCC----HHHHHHHHHH-HH--------HcCCeeEEEcCC---CCHHHHHHHhhcCCceEEe
Q 025707 134 RVDTSVP----IEETIGEMKK-LV--------EEGKIKYIGLSE---ASPDTIRRAHAVHPITAVQ 183 (249)
Q Consensus 134 ~~~~~~~----~~~~~~~l~~-l~--------~~G~ir~iGvs~---~~~~~l~~~~~~~~~~~~q 183 (249)
.|+-.-. .+.+++++-+ +. +.++|.-||-++ .+.+.+.++++..++.++.
T Consensus 135 tpgF~g~~~~G~~~a~~al~~~~~~~~~~~~~~~~~VNiIgg~~~~~~D~~elk~lL~~~Gl~v~~ 200 (455)
T PRK14476 135 TPDFKGALEDGWAAAVEAIVEALVPPASSTGRRPRQVNVLPGSHLTPGDIEELREIIEAFGLEPII 200 (455)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHhcccccCCCCCCCcEEEECCCCCCcccHHHHHHHHHHcCCceEE
Confidence 8765432 2234444322 22 346688887443 4556777777776666554
No 413
>PRK09108 type III secretion system protein HrcU; Validated
Probab=23.17 E-value=29 Score=30.96 Aligned_cols=41 Identities=24% Similarity=0.371 Sum_probs=33.6
Q ss_pred hhHHHHHHHhCCcEEecccCcccccCCCCCCCCCCCCccccc
Q 025707 195 NEIVPLCRELGIGIVPYCPLGRGFFGGKAVVESVPLDSFLVC 236 (249)
Q Consensus 195 ~~~~~~~~~~gi~v~a~spl~~G~l~g~~~~~~~~~~~~~~~ 236 (249)
..+.+.++++||+|+-.-||+..+.. ....+.+|++-|.+.
T Consensus 294 ~~Ir~~A~e~~VPvven~pLARaLy~-~~vg~~IP~ely~aV 334 (353)
T PRK09108 294 LALRRHAHALGIPIVGNPPVARALYR-VELDEPIPEELFETV 334 (353)
T ss_pred HHHHHHHHHcCCCEEeCHHHHHHHhc-CCCCCcCCHHHHHHH
Confidence 77999999999999999999999983 455667777666544
No 414
>KOG3206 consensus Alpha-tubulin folding cofactor B [Posttranslational modification, protein turnover, chaperones]
Probab=23.13 E-value=40 Score=27.62 Aligned_cols=13 Identities=46% Similarity=0.991 Sum_probs=12.2
Q ss_pred cCCCeEeCCCCcC
Q 025707 54 KGITFFDTADKYG 66 (249)
Q Consensus 54 ~Gi~~~Dta~~Yg 66 (249)
.|.++|+|++.||
T Consensus 199 ~G~ryF~c~p~yG 211 (234)
T KOG3206|consen 199 NGKRYFECAPKYG 211 (234)
T ss_pred cceEeeecCCccC
Confidence 4999999999999
No 415
>PRK06920 dnaE DNA polymerase III DnaE; Reviewed
Probab=23.05 E-value=2.5e+02 Score=29.29 Aligned_cols=93 Identities=16% Similarity=0.114 Sum_probs=52.9
Q ss_pred HHHHHHHHHHcCCeeEEEcCCCCHHHHHHHhhcCCceEEeeecCccccchhhhHHHHHHHhCCcE---------------
Q 025707 144 TIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAVHPITAVQLEWSLWARDIENEIVPLCRELGIGI--------------- 208 (249)
Q Consensus 144 ~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v--------------- 208 (249)
.-+.|+++..+|..+.+|.. ..+-.+++...-. .+.+..|.-+-- ...+++.+|+++||.|
T Consensus 280 ~~~~L~~l~~~Gl~~Ry~~~--~~~y~~RL~~EL~-vI~~mGf~~YFL-IV~D~i~~Ak~~gI~VGPGRGSaAGSLVaY~ 355 (1107)
T PRK06920 280 ADMYLRRVCEEGLQKRYGTP--KEVHINRLNHELN-VISRMGFSDYFL-IVWDFMKYAHENHILTGPGRGSAAGSLVSYV 355 (1107)
T ss_pred HHHHHHHHHHHHHHHHcCCC--cHHHHHHHHHHHH-HHHHCCCCcchH-HHHHHHHHHHHCCCEeCCCcchHHHHHHHHH
Confidence 34578888888888877732 2222222211100 112222222111 1278999999999987
Q ss_pred ---EecccCcccccCCCCCCCCCCCCcccccCCCcceeeee
Q 025707 209 ---VPYCPLGRGFFGGKAVVESVPLDSFLVCFSSISVSFCF 246 (249)
Q Consensus 209 ---~a~spl~~G~l~g~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (249)
..--|+.-|+|..+... .-|.+.|.+-++||-
T Consensus 356 LgIT~VDPl~y~LlFERFLN------peR~smPDIDiDF~~ 390 (1107)
T PRK06920 356 LEITDIDPIEYDLLFERFLN------PERVTLPDIDIDFPD 390 (1107)
T ss_pred hCCCccCccccCCcHHhhcC------CCCCCCCCccccccc
Confidence 23456777777777322 125578888888874
No 416
>PRK11893 methionyl-tRNA synthetase; Reviewed
Probab=22.95 E-value=1.3e+02 Score=28.06 Aligned_cols=49 Identities=14% Similarity=0.211 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCCeeE
Q 025707 108 PEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKY 159 (249)
Q Consensus 108 ~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~ 159 (249)
.+...+.+.+.|++||++ .|.+. ........+.+.+.+.+|.++|.|-.
T Consensus 69 ~~~~~~~~~~~l~~l~I~-~D~~~--~t~~~~~~~~v~~~~~~L~~~G~iY~ 117 (511)
T PRK11893 69 ADRNSAAFKRLWEALNIS-YDDFI--RTTDPRHKEAVQEIFQRLLANGDIYL 117 (511)
T ss_pred HHHHHHHHHHHHHHhCCC-cCCce--eCCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 456778899999999997 57542 22233357788999999999998754
No 417
>PF04967 HTH_10: HTH DNA binding domain; InterPro: IPR007050 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. This entry represents the HTH DNA binding domain found in Halobacterium salinarium (Halobacterium halobium) and described as a putative bacterio-opsin activator.
Probab=22.93 E-value=2e+02 Score=17.96 Aligned_cols=30 Identities=27% Similarity=0.421 Sum_probs=20.2
Q ss_pred HHHHHHHHHHcCCCeEeCCCCcCCCchHHHHHHHHH
Q 025707 44 GISIIKHAFSKGITFFDTADKYGPYTNEILLGKALK 79 (249)
Q Consensus 44 ~~~~l~~A~~~Gi~~~Dta~~Yg~g~se~~lg~~l~ 79 (249)
-.+++..|++.| |||....- +-.-|++.|.
T Consensus 5 Q~e~L~~A~~~G--Yfd~PR~~----tl~elA~~lg 34 (53)
T PF04967_consen 5 QREILKAAYELG--YFDVPRRI----TLEELAEELG 34 (53)
T ss_pred HHHHHHHHHHcC--CCCCCCcC----CHHHHHHHhC
Confidence 458899999999 56765443 4555555554
No 418
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=22.88 E-value=4.9e+02 Score=22.31 Aligned_cols=115 Identities=12% Similarity=0.102 Sum_probs=70.3
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCCCCcCCCchHHHHHHHHHc-----CCCCCeEEEecccccccC---C-cccccCCCHHH
Q 025707 40 SEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKE-----LPRENIQVATKFGFVELG---F-TSVIVKGTPEY 110 (249)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~g~se~~lg~~l~~-----~~r~~~~I~tK~~~~~~~---~-~~~~~~~s~~~ 110 (249)
.-..+.+.|+...+.|+.++=.+++-. ++.+.+.+.|+. ...++|+-|+-....... . ++... ..
T Consensus 25 ~ipga~e~l~~L~~~g~~~iflTNn~~--~s~~~~~~~L~~~~~~~~~~~~i~TS~~at~~~l~~~~~~~kv~v-iG--- 98 (269)
T COG0647 25 AIPGAAEALKRLKAAGKPVIFLTNNST--RSREVVAARLSSLGGVDVTPDDIVTSGDATADYLAKQKPGKKVYV-IG--- 98 (269)
T ss_pred cCchHHHHHHHHHHcCCeEEEEeCCCC--CCHHHHHHHHHhhcCCCCCHHHeecHHHHHHHHHHhhCCCCEEEE-EC---
Confidence 456789999999999999998887666 677777777776 234555544443221100 0 01000 01
Q ss_pred HHHHHHHHHHHcCCCcee-------EEEeecCCCCCCHHHHHHHHHHHHHcCCeeEEEcC
Q 025707 111 VRSCCEASLRRLDVEYID-------LYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLS 163 (249)
Q Consensus 111 i~~~~~~sL~~Lg~d~iD-------l~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs 163 (249)
+..+.+.|+.+|....+ -+.+...|.....+...+++.. ..+| ++.|+.-
T Consensus 99 -~~~l~~~l~~~G~~~~~~~~~~~~d~Vv~g~d~~~~~e~l~~a~~~-i~~g-~~fI~tN 155 (269)
T COG0647 99 -EEGLKEELEGAGFELVDEEEPARVDAVVVGLDRTLTYEKLAEALLA-IAAG-APFIATN 155 (269)
T ss_pred -CcchHHHHHhCCcEEeccCCCCcccEEEEecCCCCCHHHHHHHHHH-HHcC-CcEEEeC
Confidence 34567788888864444 3555556666666665555444 4455 8888764
No 419
>PRK11267 biopolymer transport protein ExbD; Provisional
Probab=22.84 E-value=2.2e+02 Score=21.57 Aligned_cols=54 Identities=26% Similarity=0.204 Sum_probs=35.6
Q ss_pred CCHHHHHHHHHHHHHHcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCCeeEEEcCC
Q 025707 106 GTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSE 164 (249)
Q Consensus 106 ~s~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~ 164 (249)
.+.+.+...+++.+.. .-+.-.+=..|...+...+.+.|+.+++.| +..|++.+
T Consensus 81 v~~~~L~~~L~~~~~~----~~~~~V~I~aD~~~~~~~vv~vmd~l~~aG-~~~v~l~t 134 (141)
T PRK11267 81 VTDETMITALDALTEG----KKDTTIFFRADKTVDYETLMKVMDTLHQAG-YLKIGLVG 134 (141)
T ss_pred ccHHHHHHHHHHHHhc----CCCceEEEEcCCCCCHHHHHHHHHHHHHcC-CCeEEEEe
Confidence 3455565555554432 223333334577788999999999999999 55687765
No 420
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=22.83 E-value=5.4e+02 Score=22.83 Aligned_cols=66 Identities=15% Similarity=0.080 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHcCCCceeEEEeecC-------CCCCCHHHHHHHHHHHHHcCC--eeE---EEcCCCCHHHHHHHhh
Q 025707 110 YVRSCCEASLRRLDVEYIDLYYQHRV-------DTSVPIEETIGEMKKLVEEGK--IKY---IGLSEASPDTIRRAHA 175 (249)
Q Consensus 110 ~i~~~~~~sL~~Lg~d~iDl~~lh~~-------~~~~~~~~~~~~l~~l~~~G~--ir~---iGvs~~~~~~l~~~~~ 175 (249)
.+....-+.|++.|++++.+-.=... ......++++++++.+++.|. |.. +|+...+.+.+.+.++
T Consensus 97 ~l~~e~l~~l~~~G~~rvsiGvqS~~~~~l~~l~r~~~~~~~~~~i~~l~~~g~~~v~~dli~GlPgqt~~~~~~~l~ 174 (377)
T PRK08599 97 DLTKEKLQVLKDSGVNRISLGVQTFNDELLKKIGRTHNEEDVYEAIANAKKAGFDNISIDLIYALPGQTIEDFKESLA 174 (377)
T ss_pred CCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCcEEEeeecCCCCCCHHHHHHHHH
Confidence 34445556777788877665443322 112456788999999999884 332 4777777776665544
No 421
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=22.78 E-value=4e+02 Score=21.30 Aligned_cols=109 Identities=19% Similarity=0.231 Sum_probs=51.4
Q ss_pred CcccCcceeecccccCCCCCCCCHHHHHHHHHHHHHcCCCeEeCCCCcCCCchHHHHHHHHHc----CCCCCeEEEeccc
Q 025707 18 GLEVSKLGYGCMSLSGCYNSPLSEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKE----LPRENIQVATKFG 93 (249)
Q Consensus 18 g~~vs~lg~Gt~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~g~se~~lg~~l~~----~~r~~~~I~tK~~ 93 (249)
|+.+-.|||++.. .=+.+..+.|..- ++-+-.+|+.++.....-++.+-.+++. .|.-.|++.+.+.
T Consensus 33 ~~~~iNLGfsG~~--------~le~~~a~~ia~~-~a~~~~ld~~~N~~~~~~~~~~~~fv~~iR~~hP~tPIllv~~~~ 103 (178)
T PF14606_consen 33 GLDVINLGFSGNG--------KLEPEVADLIAEI-DADLIVLDCGPNMSPEEFRERLDGFVKTIREAHPDTPILLVSPIP 103 (178)
T ss_dssp T-EEEEEE-TCCC--------S--HHHHHHHHHS---SEEEEEESHHCCTTTHHHHHHHHHHHHHTT-SSS-EEEEE---
T ss_pred CCCeEeeeecCcc--------ccCHHHHHHHhcC-CCCEEEEEeecCCCHHHHHHHHHHHHHHHHHhCCCCCEEEEecCC
Confidence 4555556664321 1234444444433 6677777887775433344455555544 4677888888777
Q ss_pred ccccCCcccccCCCHHHHHHHHHHHHHHcC-CCceeEEEeecCC
Q 025707 94 FVELGFTSVIVKGTPEYVRSCCEASLRRLD-VEYIDLYYQHRVD 136 (249)
Q Consensus 94 ~~~~~~~~~~~~~s~~~i~~~~~~sL~~Lg-~d~iDl~~lh~~~ 136 (249)
...... ........+..++.+++..+.|. -..-++++++..+
T Consensus 104 ~~~~~~-~~~~~~~~~~~~~~~r~~v~~l~~~g~~nl~~l~g~~ 146 (178)
T PF14606_consen 104 YPAGYF-DNSRGETVEEFREALREAVEQLRKEGDKNLYYLDGEE 146 (178)
T ss_dssp -TTTTS---TTS--HHHHHHHHHHHHHHHHHTT-TTEEEE-HHH
T ss_pred cccccc-CchHHHHHHHHHHHHHHHHHHHHHcCCCcEEEeCchh
Confidence 544211 11112345667777777777771 1245678887654
No 422
>TIGR00238 KamA family protein. Note that the E. coli homolog was expressed in E. coli and purified and found not to display display lysine 2,3-aminomutase activity. Active site residues are found in 100 residue extension in B. subtilis. Name changed to KamA family protein.
Probab=22.70 E-value=5.3e+02 Score=22.65 Aligned_cols=77 Identities=12% Similarity=0.064 Sum_probs=43.3
Q ss_pred HHHHHHHHHHcCCeeEEEcCC---------CCHHHHHHHhhcCCceEEee-ecCccc--cchhhhHHHHHHHhCCcEEec
Q 025707 144 TIGEMKKLVEEGKIKYIGLSE---------ASPDTIRRAHAVHPITAVQL-EWSLWA--RDIENEIVPLCRELGIGIVPY 211 (249)
Q Consensus 144 ~~~~l~~l~~~G~ir~iGvs~---------~~~~~l~~~~~~~~~~~~q~-~~n~~~--~~~~~~~~~~~~~~gi~v~a~ 211 (249)
..+.++.+++-+.++.|.++. .+. .+.+.++......+++ .+|.-. .....+.++.+++.|+.+...
T Consensus 178 L~~ll~~L~~i~~~~~IRi~tr~~~~~P~rit~-el~~~L~~~~~~~~~vsh~nh~~Ei~~~~~~ai~~L~~aGi~v~~q 256 (331)
T TIGR00238 178 LEWLLKRLEEIPHLVRLRIGTRLPVVIPQRITD-ELCELLASFELQLMLVTHINHCNEITEEFAEAMKKLRTVNVTLLNQ 256 (331)
T ss_pred HHHHHHHHHhcCCccEEEeecCCCccCchhcCH-HHHHHHHhcCCcEEEEccCCChHhCCHHHHHHHHHHHHcCCEEEee
Confidence 555666666666665555433 132 3333343333333333 233221 111256778889999999999
Q ss_pred ccCcccccCC
Q 025707 212 CPLGRGFFGG 221 (249)
Q Consensus 212 spl~~G~l~g 221 (249)
+++..|..-.
T Consensus 257 tvLl~gvnD~ 266 (331)
T TIGR00238 257 SVLLRGVNDR 266 (331)
T ss_pred cceECCcCCC
Confidence 9999986543
No 423
>PF01680 SOR_SNZ: SOR/SNZ family; InterPro: IPR001852 Snz1p is a highly conserved protein involved in growth arrest in Saccharomyces cerevisiae (Baker's yeast) []. Sor1 (singlet oxygen resistance) is essential in pyridoxine (vitamin B6) synthesis in Cercospora nicotianae and Aspergillus flavus. Pyridoxine quenches singlet oxygen at a rate comparable to that of vitamins C and E, two of the most highly efficient biological antioxidants, suggesting a previously unknown role for pyridoxine in active oxygen resistance [].; GO: 0042823 pyridoxal phosphate biosynthetic process; PDB: 2ISS_A 1ZNN_B 2ZBT_B 2NV2_I 2NV1_C 4ADS_C 4ADU_B 4ADT_B 3FEM_F 3O07_A ....
Probab=22.65 E-value=52 Score=26.46 Aligned_cols=19 Identities=32% Similarity=0.277 Sum_probs=12.4
Q ss_pred HHHHHcCCCceeEEEeecC
Q 025707 117 ASLRRLDVEYIDLYYQHRV 135 (249)
Q Consensus 117 ~sL~~Lg~d~iDl~~lh~~ 135 (249)
+.|+.||+||||==-+=.|
T Consensus 87 qiLealgVD~IDESEVLTp 105 (208)
T PF01680_consen 87 QILEALGVDYIDESEVLTP 105 (208)
T ss_dssp HHHHHTT-SEEEEETTS--
T ss_pred hhHHHhCCceecccccccc
Confidence 5789999999996544333
No 424
>COG1625 Fe-S oxidoreductase, related to NifB/MoaA family [Energy production and conversion]
Probab=22.65 E-value=4.6e+02 Score=24.01 Aligned_cols=118 Identities=12% Similarity=-0.008 Sum_probs=71.9
Q ss_pred HHHHHHHHHHcC----CCeEeCCCCcCC--CchHHHHHHHHHcCCCCCeEEEecccccccCCcccccCCCHHHHHHHHHH
Q 025707 44 GISIIKHAFSKG----ITFFDTADKYGP--YTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEA 117 (249)
Q Consensus 44 ~~~~l~~A~~~G----i~~~Dta~~Yg~--g~se~~lg~~l~~~~r~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~~~~ 117 (249)
....++.+-+.+ |+.-+|+-.|.. +.++. +-...=+++.|+-...-... ..+...+..+..+.+++..
T Consensus 96 le~~~~r~~~~~~d~~~rL~~tsG~~~~lt~~~~~-----i~~~gvdev~~SVhtT~p~l-R~klm~n~~A~~~le~L~~ 169 (414)
T COG1625 96 LEPRGRRARLYYKDDDIRLSFTSGSGFTLTNRAER-----IIDAGVDEVYFSVHTTNPEL-RAKLMKNPNAEQLLELLRR 169 (414)
T ss_pred hhhhhhHHHhhcCCccceeeeeeccceeccchHHH-----HHHcCCCeeEEEEeeCCHHH-HHHHhcCCcHHHHHHHHHH
Confidence 445566666666 777788777752 23333 32245678888766543210 0112234456667777777
Q ss_pred HHHHcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCCeeE----EEcCCCCH
Q 025707 118 SLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKY----IGLSEASP 167 (249)
Q Consensus 118 sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~----iGvs~~~~ 167 (249)
..++-=.-|.+++++-..++...+.++++-|+++-..+.+-. +|+.-++.
T Consensus 170 f~~~~~~v~a~iVl~PGvNdge~L~kT~~dL~~~g~~~~~~~~~~pvGlt~~n~ 223 (414)
T COG1625 170 FAERCIEVHAQIVLCPGVNDGEELEKTLEDLEEWGAHEVILMRVVPVGLTRYNR 223 (414)
T ss_pred HHHhhhheeeEEEEcCCcCcHHHHHHHHHHHHHhCcCceeEEEeecceeeecCC
Confidence 666652238899999888877778888888888755544433 57665544
No 425
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=22.63 E-value=5.9e+02 Score=23.21 Aligned_cols=128 Identities=11% Similarity=-0.024 Sum_probs=0.0
Q ss_pred ecccccCCCCCCCCHHHHHHHHHHHHHcCCCeE-e-CCCC-cCCCchHHHHHHHHHcCCCCCeEEEecccccccCCcccc
Q 025707 27 GCMSLSGCYNSPLSEEDGISIIKHAFSKGITFF-D-TADK-YGPYTNEILLGKALKELPRENIQVATKFGFVELGFTSVI 103 (249)
Q Consensus 27 Gt~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~-D-ta~~-Yg~g~se~~lg~~l~~~~r~~~~I~tK~~~~~~~~~~~~ 103 (249)
|...+.+ -+...-.+...++++.+-+.|++.- + |+.. +. .++.+-+.++ ..=+.+.|+-|..-......-..
T Consensus 75 ggVtisG-GGepl~~~~l~eLl~~lk~~gi~taI~~TnG~~l~---~~e~~~~L~~-~gld~v~iSvka~dpe~h~kl~G 149 (404)
T TIGR03278 75 TKVTISG-GGDVSCYPELEELTKGLSDLGLPIHLGYTSGKGFD---DPEIAEFLID-NGVREVSFTVFATDPELRREWMK 149 (404)
T ss_pred CEEEEEC-CcccccCHHHHHHHHHHHhCCCCEEEeCCCCcccC---CHHHHHHHHH-cCCCEEEEecccCCHHHHHHHhC
Q ss_pred cCCCHHHHHHHHHHHHHHcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCCeeEEEcCCC
Q 025707 104 VKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEA 165 (249)
Q Consensus 104 ~~~s~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~ 165 (249)
.+.. +.+.+.++...+. ..-++-++++...++...+.++++.|.++ .+..+|+..|
T Consensus 150 ~~~a-~~ILe~L~~L~e~-~~v~~~ivlIPGiND~eel~~ti~~L~~l----g~~~V~L~~y 205 (404)
T TIGR03278 150 DPTP-EASLQCLRRFCES-CEVHAASVIIPGVNDGDVLWKTCADLESW----GAKALILMRF 205 (404)
T ss_pred CCCH-HHHHHHHHHHHhc-CCEEEEEEEeCCccCcHHHHHHHHHHHHC----CCCEEEEEec
No 426
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=22.53 E-value=5.7e+02 Score=22.94 Aligned_cols=24 Identities=13% Similarity=0.313 Sum_probs=21.2
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCC
Q 025707 39 LSEEDGISIIKHAFSKGITFFDTA 62 (249)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~Dta 62 (249)
.+.++..++++.-.++||..++..
T Consensus 23 ~s~e~k~~ia~~L~~~GV~~IE~G 46 (378)
T PRK11858 23 FTNEEKLAIARMLDEIGVDQIEAG 46 (378)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEe
Confidence 477889999999999999999985
No 427
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=22.47 E-value=7.1e+02 Score=24.05 Aligned_cols=148 Identities=13% Similarity=0.070 Sum_probs=73.5
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCCCCcCCCchHHHHHHHHHc----CCCCCeEEEecccccccCCcccccCCCHHHHHHH
Q 025707 39 LSEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKE----LPRENIQVATKFGFVELGFTSVIVKGTPEYVRSC 114 (249)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~g~se~~lg~~l~~----~~r~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~ 114 (249)
++++.....++.|.+.|+..|-....-.+ -+.+..+++. ...-+..|+--.. +.++.+.+.+-
T Consensus 94 ypddvv~~~v~~a~~~Gid~~rifd~lnd---~~~~~~ai~~ak~~G~~~~~~i~yt~~----------p~~~~~~~~~~ 160 (593)
T PRK14040 94 YADDVVERFVERAVKNGMDVFRVFDAMND---PRNLETALKAVRKVGAHAQGTLSYTTS----------PVHTLQTWVDL 160 (593)
T ss_pred CcHHHHHHHHHHHHhcCCCEEEEeeeCCc---HHHHHHHHHHHHHcCCeEEEEEEEeeC----------CccCHHHHHHH
Confidence 35677788888999998877765543321 1222233322 1122222322111 12456666665
Q ss_pred HHHHHHHcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCCHHHHHHHh---hc-CCceEEeeecCccc
Q 025707 115 CEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAH---AV-HPITAVQLEWSLWA 190 (249)
Q Consensus 115 ~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~---~~-~~~~~~q~~~n~~~ 190 (249)
+++ +..+|. |.+.+-.......-.++.+.+..+++.=. .-||+=.|+...+.-+. .. .+.+.++...|-+-
T Consensus 161 a~~-l~~~Ga---d~i~i~Dt~G~l~P~~~~~lv~~lk~~~~-~pi~~H~Hnt~GlA~An~laAieAGa~~vD~ai~glG 235 (593)
T PRK14040 161 AKQ-LEDMGV---DSLCIKDMAGLLKPYAAYELVSRIKKRVD-VPLHLHCHATTGLSTATLLKAIEAGIDGVDTAISSMS 235 (593)
T ss_pred HHH-HHHcCC---CEEEECCCCCCcCHHHHHHHHHHHHHhcC-CeEEEEECCCCchHHHHHHHHHHcCCCEEEecccccc
Confidence 554 456776 45556554444445556666666655422 35777666553322211 11 34556666555544
Q ss_pred cch----hhhHHHHHHHh
Q 025707 191 RDI----ENEIVPLCREL 204 (249)
Q Consensus 191 ~~~----~~~~~~~~~~~ 204 (249)
... .+.++..++..
T Consensus 236 ~~~Gn~~le~vv~~L~~~ 253 (593)
T PRK14040 236 MTYGHSATETLVATLEGT 253 (593)
T ss_pred ccccchhHHHHHHHHHhc
Confidence 321 14455555443
No 428
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=22.40 E-value=4.3e+02 Score=21.53 Aligned_cols=65 Identities=22% Similarity=0.248 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHcCCCceeEEEeecCCC-----CCCHHHHHHHHHHHHHcCCeeEEEcCCCCHHHHHHH
Q 025707 108 PEYVRSCCEASLRRLDVEYIDLYYQHRVDT-----SVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRA 173 (249)
Q Consensus 108 ~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~-----~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~ 173 (249)
.....+.++.+++.+.-+..|++++.-... ..+.+++...|..--..-.|-.-| .+...+-++.+
T Consensus 104 ~~aa~~~w~~a~~~l~~~~ydlviLDEl~~al~~g~l~~eeV~~~l~~kP~~~~vIiTG-r~ap~~lie~A 173 (198)
T COG2109 104 IAAAKAGWEHAKEALADGKYDLVILDELNYALRYGLLPLEEVVALLKARPEHTHVIITG-RGAPPELIELA 173 (198)
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEehhhHHHHcCCCCHHHHHHHHhcCCCCcEEEEEC-CCCCHHHHHHH
Confidence 356777888888888888889998876543 355677777766333333444445 34444444333
No 429
>PRK14469 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=22.30 E-value=5.5e+02 Score=22.66 Aligned_cols=92 Identities=13% Similarity=0.071 Sum_probs=57.1
Q ss_pred CCCceeEEEeecCCCC-----------CCHHHHHHHHHHHHHc-CC---eeEEEcC--CCCHHHHHHHhhc---CCceEE
Q 025707 123 DVEYIDLYYQHRVDTS-----------VPIEETIGEMKKLVEE-GK---IKYIGLS--EASPDTIRRAHAV---HPITAV 182 (249)
Q Consensus 123 g~d~iDl~~lh~~~~~-----------~~~~~~~~~l~~l~~~-G~---ir~iGvs--~~~~~~l~~~~~~---~~~~~~ 182 (249)
+.+.-=.+.+|.+++. .+++++++.++++.++ +. ++++-+. |.+.+.++++.+. .+..++
T Consensus 205 ~l~~~LaiSL~a~~~e~r~~i~p~~~~~~l~~Il~~l~~~~~~~~~~v~i~yvlI~g~NDs~ed~~~La~llk~~~~~Vn 284 (343)
T PRK14469 205 GLDVKLALSLHAPTNFKRDQIVPLNKKYSIEEIINAVKIYQKKTGNRVTIEYILIKGFNDEIEDAKKLAELLKGLKVFVN 284 (343)
T ss_pred CCCcEEEEEeCCCCHHHHHhhcCcCCCCCHHHHHHHHHHHHHHhCCeEEEEEEEECCCCCCHHHHHHHHHHHhccCcEEE
Confidence 4442234667887663 3577899988887665 32 4455554 4555555555433 455677
Q ss_pred eeecCccccc---h----hhhHHHHHHHhCCcEEecccC
Q 025707 183 QLEWSLWARD---I----ENEIVPLCRELGIGIVPYCPL 214 (249)
Q Consensus 183 q~~~n~~~~~---~----~~~~~~~~~~~gi~v~a~spl 214 (249)
-++||..... . ...+.+..+++|+.+......
T Consensus 285 LIpynp~~~~~~~ps~e~l~~f~~~l~~~gi~vtvr~~~ 323 (343)
T PRK14469 285 LIPVNPTVPGLEKPSRERIERFKEILLKNGIEAEIRREK 323 (343)
T ss_pred EEecCCCCccCCCCCHHHHHHHHHHHHHCCCeEEEeCCC
Confidence 7789986422 1 145677778889999887654
No 430
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=22.16 E-value=4.2e+02 Score=21.27 Aligned_cols=131 Identities=19% Similarity=0.135 Sum_probs=82.1
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCCCCcCCCchHHHHHHHHHcCCCCCeEEEecccccccCCcccccCCCHHHHHHHHHHH
Q 025707 39 LSEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEAS 118 (249)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~g~se~~lg~~l~~~~r~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~~~~s 118 (249)
.+.++..++++.|.+.|+.-+=+.+.+- +...+.++ ...+.+.+=.+.+.. ..+.+....++++.
T Consensus 14 ~t~~~i~~~~~~a~~~~~~av~v~p~~v-----~~~~~~l~---~~~~~v~~~~~fp~g-------~~~~~~k~~eve~A 78 (203)
T cd00959 14 ATEEDIRKLCDEAKEYGFAAVCVNPCFV-----PLAREALK---GSGVKVCTVIGFPLG-------ATTTEVKVAEAREA 78 (203)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEcHHHH-----HHHHHHcC---CCCcEEEEEEecCCC-------CCcHHHHHHHHHHH
Confidence 4789999999999998887776665442 22333333 244666665544321 13355666668877
Q ss_pred HHHcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHc--CCeeE--EEcCCCCHHHHHHHhhc---CCceEEeee
Q 025707 119 LRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEE--GKIKY--IGLSEASPDTIRRAHAV---HPITAVQLE 185 (249)
Q Consensus 119 L~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~--G~ir~--iGvs~~~~~~l~~~~~~---~~~~~~q~~ 185 (249)
++ +|.|-+|+++--..-.+...+++++.+.++++. |+.-- +...-.+.+.+.++... .+.+++...
T Consensus 79 ~~-~GAdevdvv~~~g~~~~~~~~~~~~ei~~v~~~~~g~~lkvI~e~~~l~~~~i~~a~ria~e~GaD~IKTs 151 (203)
T cd00959 79 IA-DGADEIDMVINIGALKSGDYEAVYEEIAAVVEACGGAPLKVILETGLLTDEEIIKACEIAIEAGADFIKTS 151 (203)
T ss_pred HH-cCCCEEEEeecHHHHhCCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCHHHHHHHHHHHHHhCCCEEEcC
Confidence 76 699999998875543334456677777777765 43222 23444556666666544 567777777
No 431
>TIGR01861 ANFD nitrogenase iron-iron protein, alpha chain. This model represents the all-iron variant of the nitrogenase component I alpha chain. Molybdenum-iron and vanadium iron forms are also found. The complete complex contains two alpha chains, two beta chains and two delta chains. The component I associates with component II also known as the iron protein which serves to provide electrons for component I.
Probab=22.07 E-value=6.8e+02 Score=23.66 Aligned_cols=137 Identities=12% Similarity=0.150 Sum_probs=73.8
Q ss_pred CCcCCCchHHHHHHHHHc----CC-CCCeEEEecccccccCCcccccCCCHHHHHHHHHHHHHHcCCCceeEEEeecCCC
Q 025707 63 DKYGPYTNEILLGKALKE----LP-RENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDT 137 (249)
Q Consensus 63 ~~Yg~g~se~~lg~~l~~----~~-r~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~ 137 (249)
-.|| .|+-|-+++++ .+ ++-++|.|-....- .-+.|..-+++.-++.. -+.++.+|.|.-
T Consensus 107 iVfG---Ge~kL~~~I~ea~~~~~~p~~I~V~tTC~t~l----------IGDDi~av~k~~~~~~~--~~pVi~v~tpGF 171 (513)
T TIGR01861 107 VVFG---AEKLLKQNIIEAFKAFPHIKRMTIYQTCATAL----------IGDDIAAIAKEVMEEMP--DVDIFVCNSPGF 171 (513)
T ss_pred eEeC---cHHHHHHHHHHHHHhCCCCCeEEEEccCchhh----------ccCCHHHHHHHHHHhcC--CCcEEEEeCCCc
Confidence 4666 66655555544 43 45577777654221 12334444444444431 268899999866
Q ss_pred CCC-----HHHHHHH-HHHHHH--------cCCeeEEEcCCC--CHHHHHHHhhcCCceEEeee----------------
Q 025707 138 SVP-----IEETIGE-MKKLVE--------EGKIKYIGLSEA--SPDTIRRAHAVHPITAVQLE---------------- 185 (249)
Q Consensus 138 ~~~-----~~~~~~~-l~~l~~--------~G~ir~iGvs~~--~~~~l~~~~~~~~~~~~q~~---------------- 185 (249)
.-. ...+.++ +++++. .+.|--||-.|+ +.+.+.++++...+.++.+.
T Consensus 172 ~G~~~~gg~~~a~~ali~~~v~~~~~~~~~~~~VNliG~~n~~gD~~eik~lLe~~Gl~v~~~~~gg~t~~ei~~~~~A~ 251 (513)
T TIGR01861 172 AGPSQSGGHHKINIAWINQKVGTVEPEIKGKHVINYVGEYNIQGDQEVMVDYFQRMGIQVLSTFTGNGSYDDLRGMHRAH 251 (513)
T ss_pred cCccccchHHHHHHHHHHHhhcccCcccCCCCeEEEeCCCCCccCHHHHHHHHHHCCCeEEEEeCCCCCHHHHHhhccCC
Confidence 431 2223333 333331 256888885553 55778888887666665332
Q ss_pred cCcc-ccchhhhHHHHHH-HhCCcEEecccC
Q 025707 186 WSLW-ARDIENEIVPLCR-ELGIGIVPYCPL 214 (249)
Q Consensus 186 ~n~~-~~~~~~~~~~~~~-~~gi~v~a~spl 214 (249)
.|+. .......+.++.+ +.||+.+..+|+
T Consensus 252 lniv~~~~~~~~~A~~Leer~GiP~~~~~~~ 282 (513)
T TIGR01861 252 LNVLECARSAEYICNELRKRYGIPRLDIDGF 282 (513)
T ss_pred EEEEECHHHHHHHHHHHHHHhCCCeEecCcC
Confidence 2333 1111233455555 449999988875
No 432
>PRK05702 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=22.01 E-value=27 Score=31.28 Aligned_cols=42 Identities=21% Similarity=0.391 Sum_probs=33.8
Q ss_pred hhHHHHHHHhCCcEEecccCcccccCCCCCCCCCCCCccccc
Q 025707 195 NEIVPLCRELGIGIVPYCPLGRGFFGGKAVVESVPLDSFLVC 236 (249)
Q Consensus 195 ~~~~~~~~~~gi~v~a~spl~~G~l~g~~~~~~~~~~~~~~~ 236 (249)
..+.+.|+++||+++...||+..+...-...+.+|++.+.+.
T Consensus 299 ~~i~~~A~~~~vpi~~~~~LAr~Ly~~~~~g~~Ip~~~~~aV 340 (359)
T PRK05702 299 LKIREIAREHNVPIVENPPLARALYATVEIGQEIPEELYKAV 340 (359)
T ss_pred HHHHHHHHHcCCCEEeCHHHHHHHHHcCCCCCccCHHHHHHH
Confidence 679999999999999999999998755445566777666543
No 433
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=21.97 E-value=2.1e+02 Score=25.29 Aligned_cols=67 Identities=13% Similarity=0.183 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHcCCCceeEEEeecCC-------CCCCHHHHHHHHHHHHHcCC--eeE---EEcCCCCHHHHHHHhh
Q 025707 109 EYVRSCCEASLRRLDVEYIDLYYQHRVD-------TSVPIEETIGEMKKLVEEGK--IKY---IGLSEASPDTIRRAHA 175 (249)
Q Consensus 109 ~~i~~~~~~sL~~Lg~d~iDl~~lh~~~-------~~~~~~~~~~~l~~l~~~G~--ir~---iGvs~~~~~~l~~~~~ 175 (249)
+.+.+..=+.|+++|++++.+=.=...+ .....+++.++++.+++.|. |.. +|+...+.+.+.+.++
T Consensus 96 ~~lt~e~l~~l~~~Gv~risiGvqS~~~~~l~~lgR~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPgqt~~~~~~~l~ 174 (360)
T TIGR00539 96 ELITAEWCKGLKGAGINRLSLGVQSFRDDKLLFLGRQHSAKNIAPAIETALKSGIENISLDLMYGLPLQTLNSLKEELK 174 (360)
T ss_pred CCCCHHHHHHHHHcCCCEEEEecccCChHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEEeccCCCCCCCHHHHHHHHH
Confidence 3344455577788898887765443322 12457889999999999985 443 5777778776665544
No 434
>PRK11194 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=21.92 E-value=5.9e+02 Score=22.93 Aligned_cols=92 Identities=13% Similarity=0.282 Sum_probs=55.5
Q ss_pred EeecCCCC-----------CCHHHHHHHHHHHHHcC-------CeeEEEcC--CCCHHHHHHHhh---cCCceEEeeecC
Q 025707 131 YQHRVDTS-----------VPIEETIGEMKKLVEEG-------KIKYIGLS--EASPDTIRRAHA---VHPITAVQLEWS 187 (249)
Q Consensus 131 ~lh~~~~~-----------~~~~~~~~~l~~l~~~G-------~ir~iGvs--~~~~~~l~~~~~---~~~~~~~q~~~n 187 (249)
.+|.+++. .+++++++++.+..++- .|+++=+. |.+.+.++++.+ ..+..++-++||
T Consensus 221 SLha~d~e~R~~lmPin~~~~l~~ll~a~~~y~~~~~~~~rrI~irypLIpGvNDs~e~a~~La~ll~~l~~~VnLIPYN 300 (372)
T PRK11194 221 SLHAPNDELRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTVEYVMLDHVNDGTEHAHQLAELLKDTPCKINLIPWN 300 (372)
T ss_pred eccCCCHHHHHHhcCCcccccHHHHHHHHHHHHHhcccCCCeEEEEEEeECCCCCCHHHHHHHHHHHhcCCceEEEecCC
Confidence 47988664 24567777766655432 46666555 345555555443 345678888999
Q ss_pred ccccc----hh----hhHHHHHHHhCCcEEecccC------cccccCCC
Q 025707 188 LWARD----IE----NEIVPLCRELGIGIVPYCPL------GRGFFGGK 222 (249)
Q Consensus 188 ~~~~~----~~----~~~~~~~~~~gi~v~a~spl------~~G~l~g~ 222 (249)
.+... .. ..+.+..+++|+.+.....- ++|.|..+
T Consensus 301 ~~~~~~~~~ps~e~v~~f~~~L~~~Gi~vtiR~~~G~di~aaCGQL~~~ 349 (372)
T PRK11194 301 PFPGAPYGRSSNSRIDRFSKVLMEYGFTVIVRKTRGDDIDAACGQLAGD 349 (372)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCeEEEecCCCCcchhcCcCcHhh
Confidence 86521 11 44667778889999876554 44555544
No 435
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=21.90 E-value=3.6e+02 Score=23.07 Aligned_cols=63 Identities=19% Similarity=0.150 Sum_probs=33.5
Q ss_pred HHHHHHHHcCCeeEEEcCCCCHHHHHHHhhcCCceEEeeecCccccchhhhHHHHHHHh--CCcEEec
Q 025707 146 GEMKKLVEEGKIKYIGLSEASPDTIRRAHAVHPITAVQLEWSLWARDIENEIVPLCREL--GIGIVPY 211 (249)
Q Consensus 146 ~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~--gi~v~a~ 211 (249)
++++++++.-.-+.||++.++.+++.++.+ ...+++++. |+. +....++++.+++. .+.+++.
T Consensus 172 ~av~~~R~~~~~~~IgVev~t~eea~~A~~-~gaD~I~ld-~~~-p~~l~~~~~~~~~~~~~i~i~As 236 (272)
T cd01573 172 KALARLRATAPEKKIVVEVDSLEEALAAAE-AGADILQLD-KFS-PEELAELVPKLRSLAPPVLLAAA 236 (272)
T ss_pred HHHHHHHHhCCCCeEEEEcCCHHHHHHHHH-cCCCEEEEC-CCC-HHHHHHHHHHHhccCCCceEEEE
Confidence 344444433222358999888888777764 455677664 222 11124455555543 3555543
No 436
>COG0422 ThiC Thiamine biosynthesis protein ThiC [Coenzyme metabolism]
Probab=21.85 E-value=6.1e+02 Score=23.09 Aligned_cols=105 Identities=12% Similarity=0.084 Sum_probs=58.0
Q ss_pred CCHHHHHHHHHHHHHcCCC-eEeCCCCcCCCchHHHHHHHHHcCCCCCeEEEecccccccC-CcccccCCCHHHHHHHHH
Q 025707 39 LSEEDGISIIKHAFSKGIT-FFDTADKYGPYTNEILLGKALKELPRENIQVATKFGFVELG-FTSVIVKGTPEYVRSCCE 116 (249)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~-~~Dta~~Yg~g~se~~lg~~l~~~~r~~~~I~tK~~~~~~~-~~~~~~~~s~~~i~~~~~ 116 (249)
.+.++-.+=+..|.+.|.. ..|-|- +| .-..+.+++- .-..+=|.|---+.... -.....+.+.+.+...++
T Consensus 75 ~~i~~EveK~~~A~~~GADtvMDLSt-Gg---dl~eiR~~ii--~~s~vPvGTVPIYqA~~~~~~~~~~~t~d~~~~~v~ 148 (432)
T COG0422 75 SDIDEEVEKAVWAIKWGADTVMDLST-GG---DLHEIREWII--RNSPVPVGTVPIYQALEEVNGKVEDLTEDDFFDTVE 148 (432)
T ss_pred CCHHHHHHHHHHHHHhCcceeEeccc-CC---CHHHHHHHHH--hcCCCCcCCchHHHHHHHHhcchhhCCHHHHHHHHH
Confidence 3566666777889999953 446553 34 4445555552 22222222210000000 011134566777777666
Q ss_pred HHHHHcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCCeeEE
Q 025707 117 ASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYI 160 (249)
Q Consensus 117 ~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~i 160 (249)
+..+ +-+|++-+|.- -..+.++.+++.|++..|
T Consensus 149 ~qa~----~GVdfmTIHaG-------V~~~~~~~~~~~~R~~gi 181 (432)
T COG0422 149 KQAE----QGVDFMTIHAG-------VLLEYVPRTKRSGRVTGI 181 (432)
T ss_pred HHHH----hCCcEEEeehh-------hhHHHHHHHHhcCceeee
Confidence 6554 45677999974 257788899999886544
No 437
>PRK12383 putative mutase; Provisional
Probab=21.82 E-value=5.2e+02 Score=23.63 Aligned_cols=84 Identities=11% Similarity=0.130 Sum_probs=55.9
Q ss_pred EEEeecCCCCCCHHHHHHHHHHHHHc---CCeeEEEcCCCCHHHHHHHhhc--CCceEE--------------ee-ecCc
Q 025707 129 LYYQHRVDTSVPIEETIGEMKKLVEE---GKIKYIGLSEASPDTIRRAHAV--HPITAV--------------QL-EWSL 188 (249)
Q Consensus 129 l~~lh~~~~~~~~~~~~~~l~~l~~~---G~ir~iGvs~~~~~~l~~~~~~--~~~~~~--------------q~-~~n~ 188 (249)
+|++....+..++++.++..+..++- |+|-+.|=-+.+.+.|..+.+. .||.-. +. .|++
T Consensus 151 v~qiaahe~~i~~e~l~~~c~~~R~~~~v~RVIargg~~~~~~~~~~~~~~~~~pf~G~~~~~~~~~rt~~~vrhldy~~ 230 (406)
T PRK12383 151 VYNVTANLSVISFDDALKIGRIVREQVQVGRVIVFGGLLTDSQRILDAAESKEGRFIGINAPKSGVYDNGYQVVHLGYGV 230 (406)
T ss_pred eEEEEecccccCHHHHHHHHHHHHHhcccceEEEecccccccchhhhhhcccCCCcccccCCCCCceECCCccccCCCCC
Confidence 88898888888899887777666655 6666665456677777777665 233221 11 2222
Q ss_pred cccchhhhHHHHHHHhCCcEEecccCc
Q 025707 189 WARDIENEIVPLCRELGIGIVPYCPLG 215 (249)
Q Consensus 189 ~~~~~~~~~~~~~~~~gi~v~a~spl~ 215 (249)
-. ...+.++.++.|+.+.+.+...
T Consensus 231 ~p---~~~v~~~l~~~G~~v~~VGKi~ 254 (406)
T PRK12383 231 DP---KVQVPQKLYEAGVPVVLVGKVA 254 (406)
T ss_pred CC---cchhhhHHHHcCCCEEEEEEhH
Confidence 21 2679999999999999875543
No 438
>PRK08064 cystathionine beta-lyase; Provisional
Probab=21.78 E-value=4.9e+02 Score=23.26 Aligned_cols=62 Identities=6% Similarity=0.093 Sum_probs=39.5
Q ss_pred CeeEEEcCCCCHHHHHHHhhc-CCceEEeeecCccccchh-hhHHHHHHHhCCcEEecccCccccc
Q 025707 156 KIKYIGLSEASPDTIRRAHAV-HPITAVQLEWSLWARDIE-NEIVPLCRELGIGIVPYCPLGRGFF 219 (249)
Q Consensus 156 ~ir~iGvs~~~~~~l~~~~~~-~~~~~~q~~~n~~~~~~~-~~~~~~~~~~gi~v~a~spl~~G~l 219 (249)
.++.+-+ .+.+.+++++.. .+..++..+-|+.-.-.. .++.+.|+++|+.++.=..++.+.+
T Consensus 119 ~v~~v~~--~d~~~l~~~l~~~tklV~l~~p~NptG~~~dl~~I~~la~~~g~~vvvD~a~~~~~~ 182 (390)
T PRK08064 119 EHTFVDM--TNLEEVAQNIKPNTKLFYVETPSNPLLKVTDIRGVVKLAKAIGCLTFVDNTFLTPLL 182 (390)
T ss_pred EEEEECC--CCHHHHHHhcCCCceEEEEECCCCCCcEeccHHHHHHHHHHcCCEEEEECCCCcccc
Confidence 3444444 356677666542 456666667776544323 7899999999998887666655543
No 439
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=21.75 E-value=5.5e+02 Score=23.08 Aligned_cols=16 Identities=13% Similarity=0.235 Sum_probs=8.2
Q ss_pred hhHHHHHHHhCCcEEe
Q 025707 195 NEIVPLCRELGIGIVP 210 (249)
Q Consensus 195 ~~~~~~~~~~gi~v~a 210 (249)
..+.+.+++.++.|++
T Consensus 177 ~~i~~~ik~~~ipVIa 192 (368)
T PRK08649 177 LNLKEFIYELDVPVIV 192 (368)
T ss_pred HHHHHHHHHCCCCEEE
Confidence 3355555555555554
No 440
>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=21.73 E-value=5.1e+02 Score=23.79 Aligned_cols=55 Identities=9% Similarity=0.074 Sum_probs=36.7
Q ss_pred CCHHHHHHHhhc-CCceEEeeecCccccchh-hhHHHHHHHhCCcEEecccCccccc
Q 025707 165 ASPDTIRRAHAV-HPITAVQLEWSLWARDIE-NEIVPLCRELGIGIVPYCPLGRGFF 219 (249)
Q Consensus 165 ~~~~~l~~~~~~-~~~~~~q~~~n~~~~~~~-~~~~~~~~~~gi~v~a~spl~~G~l 219 (249)
.+.+.+++++.. .+..++....|+.-.... +++.+.|+++|+.++.=..++.|.+
T Consensus 143 ~d~e~l~~ai~~~tklV~ie~~sNp~G~v~Dl~~I~~la~~~gi~liVD~t~a~~~~ 199 (436)
T PRK07812 143 DDLDAWRAAVRPNTKAFFAETISNPQIDVLDIPGVAEVAHEAGVPLIVDNTIATPYL 199 (436)
T ss_pred CCHHHHHHhCCCCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCccccc
Confidence 456677766543 445566667776544323 7899999999998887776665544
No 441
>PF14542 Acetyltransf_CG: GCN5-related N-acetyl-transferase; PDB: 2H5M_A 2Q44_A 1XMT_A 2Q4Y_A 2IL4_A 2EVN_A 1R57_A.
Probab=21.73 E-value=28 Score=23.60 Aligned_cols=29 Identities=24% Similarity=0.523 Sum_probs=23.7
Q ss_pred hhHHHHHHHhCCcEEecccCcccccCCCC
Q 025707 195 NEIVPLCRELGIGIVPYCPLGRGFFGGKA 223 (249)
Q Consensus 195 ~~~~~~~~~~gi~v~a~spl~~G~l~g~~ 223 (249)
..++++++++|..|.+..|+....+...+
T Consensus 45 ~~~l~~a~~~~~kv~p~C~y~~~~~~~hp 73 (78)
T PF14542_consen 45 EAALDYARENGLKVVPTCSYVAKYFRRHP 73 (78)
T ss_dssp HHHHHHHHHTT-EEEETSHHHHHHHHH-G
T ss_pred HHHHHHHHHCCCEEEEECHHHHHHHHhCc
Confidence 77999999999999999999988775553
No 442
>smart00857 Resolvase Resolvase, N terminal domain. The N-terminal domain of the resolvase family contains the active site and the dimer interface. The extended arm at the C-terminus of this domain connects to the C-terminal helix-turn-helix domain of resolvase.
Probab=21.72 E-value=2.8e+02 Score=20.56 Aligned_cols=51 Identities=16% Similarity=0.291 Sum_probs=36.1
Q ss_pred HHHHHHHHHHcCCCceeEEEeecCCCCC-CHHHHHHHHHHHHHcCCeeEEEcC
Q 025707 112 RSCCEASLRRLDVEYIDLYYQHRVDTSV-PIEETIGEMKKLVEEGKIKYIGLS 163 (249)
Q Consensus 112 ~~~~~~sL~~Lg~d~iDl~~lh~~~~~~-~~~~~~~~l~~l~~~G~ir~iGvs 163 (249)
+..+.+.|+.+....+|.+++...+... ...+....++.|.+.| |+-+-++
T Consensus 51 Rp~l~~ll~~~~~g~~~~ivv~~~~Rl~R~~~~~~~~~~~l~~~g-i~l~~~~ 102 (148)
T smart00857 51 RPGLQRLLADLRAGDIDVLVVYKLDRLGRSLRDLLALLELLEKKG-VRLVSVT 102 (148)
T ss_pred CHHHHHHHHHHHcCCCCEEEEeccchhhCcHHHHHHHHHHHHHCC-CEEEECc
Confidence 3456667777766677999998887743 4567788888888887 5666554
No 443
>PRK08084 DNA replication initiation factor; Provisional
Probab=21.67 E-value=3.2e+02 Score=22.49 Aligned_cols=45 Identities=9% Similarity=0.225 Sum_probs=32.5
Q ss_pred ceeEEEeecCCCCC---C-HHHHHHHHHHHHHcCCeeEEEcCCCCHHHH
Q 025707 126 YIDLYYQHRVDTSV---P-IEETIGEMKKLVEEGKIKYIGLSEASPDTI 170 (249)
Q Consensus 126 ~iDl~~lh~~~~~~---~-~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l 170 (249)
..|++++...+... . -++.++.+..+.+.|+++-|+.|+..+..+
T Consensus 97 ~~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l 145 (235)
T PRK08084 97 QLSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQL 145 (235)
T ss_pred hCCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHc
Confidence 35888886654421 1 234678888999999999999999887664
No 444
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases. Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=21.65 E-value=1.2e+02 Score=26.84 Aligned_cols=47 Identities=21% Similarity=0.219 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHcCC--CceeEEEeecCCCCCCHHHHHHHHHHHHHcCCee
Q 025707 109 EYVRSCCEASLRRLDV--EYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIK 158 (249)
Q Consensus 109 ~~i~~~~~~sL~~Lg~--d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir 158 (249)
+...+.+.+.+++||+ ++-..+ ...+....+.+.+.+.+|.++|.|-
T Consensus 87 ~~~~~~~~~~~~~lgi~~~~~~~~---~T~~~~~~~~v~~~f~~L~~~G~iY 135 (338)
T cd00818 87 LRYVDEQEEQFQRLGVWVDWENPY---KTMDPEYMESVWWVFKQLHEKGLLY 135 (338)
T ss_pred HHHHHHHHHHHHHhCceecCCCCe---ECCCHHHHHHHHHHHHHHHHCCCEe
Confidence 4567778899999998 332222 2333455778999999999999985
No 445
>COG3287 Uncharacterized conserved protein [Function unknown]
Probab=21.60 E-value=1.9e+02 Score=26.11 Aligned_cols=52 Identities=19% Similarity=0.126 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCCeeEEEcCC
Q 025707 111 VRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSE 164 (249)
Q Consensus 111 i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~ 164 (249)
..+.+++.-++++.++.|+.++=.+....+..++.++|.+.... +..||.|+
T Consensus 15 ~~~v~~e~~~~~~~~~~~~~~ifF~~~~~~~~~l~~~l~~~~pg--~~liGCST 66 (379)
T COG3287 15 AESVIEEMARQLGSDRSDFVLIFFSPERDEHVQLASALKQAFPG--ICLIGCST 66 (379)
T ss_pred HHHHHHHHHHhhCcCCCCeEEEEeccccccHHHHHHHHHhhCCC--CeEecccc
Confidence 45668888889999999999987777767777888888877654 66777764
No 446
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=21.55 E-value=5.9e+02 Score=22.76 Aligned_cols=136 Identities=15% Similarity=0.055 Sum_probs=71.4
Q ss_pred CCcCCCchHHHHHHHHHc----CCCCCeEEEecccccccCCcccccCCCHHHHHHHHHHHHHHcCCCceeEEEeecCCCC
Q 025707 63 DKYGPYTNEILLGKALKE----LPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTS 138 (249)
Q Consensus 63 ~~Yg~g~se~~lg~~l~~----~~r~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~ 138 (249)
-.|| .|+.|-+++++ .+.+=++|.|-.-..- --+.+..-+++.-++.+ +.++.+|.+.-.
T Consensus 67 ~V~G---g~~~L~~~i~~~~~~~~P~~i~v~~tC~~~~----------iGdDi~~v~~~~~~~~~---~~vi~v~t~gf~ 130 (406)
T cd01967 67 IVFG---GEKKLKKAIKEAYERFPPKAIFVYSTCPTGL----------IGDDIEAVAKEASKELG---IPVIPVNCEGFR 130 (406)
T ss_pred eeeC---cHHHHHHHHHHHHHhCCCCEEEEECCCchhh----------hccCHHHHHHHHHHhhC---CCEEEEeCCCee
Confidence 4566 47788888876 2333355555432211 11223333333333443 678888877443
Q ss_pred C-----CHHHHHHHHHHHH---------HcCCeeEEEcCCC--CHHHHHHHhhcCCceEEee----------------ec
Q 025707 139 V-----PIEETIGEMKKLV---------EEGKIKYIGLSEA--SPDTIRRAHAVHPITAVQL----------------EW 186 (249)
Q Consensus 139 ~-----~~~~~~~~l~~l~---------~~G~ir~iGvs~~--~~~~l~~~~~~~~~~~~q~----------------~~ 186 (249)
. ..+.+++++-+.. +.+.|--||..++ +.+.+.++++..++.++-+ .+
T Consensus 131 g~~~~~G~~~a~~al~~~l~~~~~~~~~~~~~VNiig~~~~~~d~~el~~lL~~~Gi~~~~~~~~~~~~~~i~~~~~A~~ 210 (406)
T cd01967 131 GVSQSLGHHIANDAILDHLVGTKEPEEKTPYDVNIIGEYNIGGDAWVIKPLLEELGIRVNATFTGDGTVDELRRAHRAKL 210 (406)
T ss_pred CCcccHHHHHHHHHHHHHhcCCCCcCCCCCCeEEEEeccccchhHHHHHHHHHHcCCEEEEEeCCCCCHHHHhhCccCCE
Confidence 2 2444555544432 3466888898765 3467788877766655432 12
Q ss_pred Ccc-ccchhhhHHHHHH-HhCCcEEecccC
Q 025707 187 SLW-ARDIENEIVPLCR-ELGIGIVPYCPL 214 (249)
Q Consensus 187 n~~-~~~~~~~~~~~~~-~~gi~v~a~spl 214 (249)
|+. .+.....+.++.+ +.|++++.-.|.
T Consensus 211 niv~~~~~~~~~a~~L~~r~GiP~~~~~p~ 240 (406)
T cd01967 211 NLVHCSRSMNYLAREMEERYGIPYMEVNFY 240 (406)
T ss_pred EEEEChHHHHHHHHHHHHhhCCCEEEecCC
Confidence 332 2212233333333 568988765554
No 447
>PRK14338 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=21.51 E-value=6.5e+02 Score=23.22 Aligned_cols=123 Identities=14% Similarity=0.182 Sum_probs=67.5
Q ss_pred CCHHHHHHHHHHHHHcCCCeEe----CCCCcCCCc-hHHHHHHHHHcC-CCC---CeEEEecccccccCCcccccCCCHH
Q 025707 39 LSEEDGISIIKHAFSKGITFFD----TADKYGPYT-NEILLGKALKEL-PRE---NIQVATKFGFVELGFTSVIVKGTPE 109 (249)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~D----ta~~Yg~g~-se~~lg~~l~~~-~r~---~~~I~tK~~~~~~~~~~~~~~~s~~ 109 (249)
.+.++..+.++...+.|++.|- +-..||... ....+.+-|+.+ ... ++-+.+ ..|.
T Consensus 184 r~~e~Il~ei~~l~~~G~keI~l~g~~~~~yG~d~~~~~~l~~Ll~~l~~~~gi~~ir~~~---------------~~p~ 248 (459)
T PRK14338 184 RPLAEIVEEVRRIAARGAKEITLLGQIVDSYGHDLPGRPDLADLLEAVHEIPGLERLRFLT---------------SHPA 248 (459)
T ss_pred CCHHHHHHHHHHHHHCCCeEEEEeeecCCCcccccCChHHHHHHHHHHHhcCCcceEEEEe---------------cChh
Confidence 4788888999999999987762 224566321 122344444431 111 222221 1233
Q ss_pred HHHHHHHHHHHHcC--CCceeEEEeecCCC-------CCCHHHHHHHHHHHHHc--CCe-e---EEEcCCCCHHHHHHHh
Q 025707 110 YVRSCCEASLRRLD--VEYIDLYYQHRVDT-------SVPIEETIGEMKKLVEE--GKI-K---YIGLSEASPDTIRRAH 174 (249)
Q Consensus 110 ~i~~~~~~sL~~Lg--~d~iDl~~lh~~~~-------~~~~~~~~~~l~~l~~~--G~i-r---~iGvs~~~~~~l~~~~ 174 (249)
.+.+.+-+.+++++ +.++++=+=+..+. ....+++.+.++.+++. |.. . -+|+.+-+.+.+++.+
T Consensus 249 ~i~~ell~~l~~~~~~~~~v~lglQSgsd~vLk~m~R~~t~e~~~~~i~~lr~~~pgi~i~~d~IvG~PgET~ed~~~ti 328 (459)
T PRK14338 249 WMTDRLIHAVARLPKCCPHINLPVQAGDDEVLKRMRRGYTVARYRELIARIREAIPDVSLTTDIIVGHPGETEEQFQRTY 328 (459)
T ss_pred hcCHHHHHHHhcccccccceecCcccCCHHHHHhccCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEECCCCCHHHHHHHH
Confidence 44444555555553 44544433332211 23567888888888887 432 1 1688888888777665
Q ss_pred hc
Q 025707 175 AV 176 (249)
Q Consensus 175 ~~ 176 (249)
+.
T Consensus 329 ~~ 330 (459)
T PRK14338 329 DL 330 (459)
T ss_pred HH
Confidence 44
No 448
>PF01964 ThiC: ThiC family; InterPro: IPR002817 ThiC is found within the thiamin biosynthesis operon. ThiC is involved in thiamin biosynthesis []. The precise catalytic function of ThiC is still not known. ThiC participates in the formation of 4-Amino-5-hydroxymethyl-2-methylpyrimidine from AIR, an intermediate in the de novo pyrimidine biosynthesis.; GO: 0009228 thiamine biosynthetic process; PDB: 3EPO_A 3EPN_B 3EPM_B.
Probab=21.49 E-value=1.8e+02 Score=26.55 Aligned_cols=103 Identities=18% Similarity=0.126 Sum_probs=48.2
Q ss_pred CHHHHHHHHHHHHHcCCCeE-eCCCCcCCCchHHHHHHHHHcCCCCCeEEEeccccccc-CCcccccCCCHHHHHHHHHH
Q 025707 40 SEEDGISIIKHAFSKGITFF-DTADKYGPYTNEILLGKALKELPRENIQVATKFGFVEL-GFTSVIVKGTPEYVRSCCEA 117 (249)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~-Dta~~Yg~g~se~~lg~~l~~~~r~~~~I~tK~~~~~~-~~~~~~~~~s~~~i~~~~~~ 117 (249)
+.++-.+=++.|.+.|-..+ |-|- .| .-..+-+.+- ....+-|.|---+... .......+.+++.+.+.+++
T Consensus 74 d~~~E~~K~~~A~~~GADtvMDLSt-gg---dl~~iR~~il--~~~~vpvGTVPiYqa~~~~~~~~~~~t~d~~~~~ie~ 147 (420)
T PF01964_consen 74 DIEEELEKLKIAEKAGADTVMDLST-GG---DLDEIRRAIL--ENSPVPVGTVPIYQAAIRKGGSIVDMTEDDFFDVIEK 147 (420)
T ss_dssp -HHHHHHHHHHHHHTT-SEEEE----ST---THHHHHHHHH--HT-SS-EEE-HHHHHHHHTTT-GGG--HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCEEEEcCC-CC---CHHHHHHHHH--HhCCCccccchHHHHHHHhCCChhhCCHHHHHHHHHH
Confidence 55666677889999997654 6553 22 3333444442 3445555543211110 01112345778888888877
Q ss_pred HHHHcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCCeeE
Q 025707 118 SLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKY 159 (249)
Q Consensus 118 sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~ 159 (249)
..+ +-+|++-+|.-- ..+.++.+++++++-.
T Consensus 148 qa~----~GVDfmtiH~gi-------t~~~~~~~~~~~R~~g 178 (420)
T PF01964_consen 148 QAK----DGVDFMTIHCGI-------TRETLERLKKSGRIMG 178 (420)
T ss_dssp HHH----HT--EEEE-TT---------GGGGGGGT--TSSS-
T ss_pred HHH----cCCCEEEEccch-------hHHHHHHHhhhccccC
Confidence 765 456889999852 3445567777776543
No 449
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=21.48 E-value=2.4e+02 Score=23.49 Aligned_cols=53 Identities=13% Similarity=0.110 Sum_probs=32.5
Q ss_pred CCHHHHHHHhhcCCceEEeeecCc-------cccchhhhHHHHHHHhCCcEEecccCccc
Q 025707 165 ASPDTIRRAHAVHPITAVQLEWSL-------WARDIENEIVPLCRELGIGIVPYCPLGRG 217 (249)
Q Consensus 165 ~~~~~l~~~~~~~~~~~~q~~~n~-------~~~~~~~~~~~~~~~~gi~v~a~spl~~G 217 (249)
++.++..+.+...+++.+++..+. +......++.+.++++|+.|.++.|...+
T Consensus 13 ~~l~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~l~~~~~~~gl~v~s~~~~~~~ 72 (275)
T PRK09856 13 LPIEHAFRDASELGYDGIEIWGGRPHAFAPDLKAGGIKQIKALAQTYQMPIIGYTPETNG 72 (275)
T ss_pred CCHHHHHHHHHHcCCCEEEEccCCccccccccCchHHHHHHHHHHHcCCeEEEecCcccC
Confidence 445555555555677777763211 11111267888999999999988875443
No 450
>KOG1939 consensus Oxoprolinase [Amino acid transport and metabolism]
Probab=21.45 E-value=1e+02 Score=30.76 Aligned_cols=59 Identities=20% Similarity=0.262 Sum_probs=48.7
Q ss_pred CCCHHHHHHHHHHHHHcCCCeEeCC--CCcCCCchHHHHHHHHHcCCCCCeEEEecccccc
Q 025707 38 PLSEEDGISIIKHAFSKGITFFDTA--DKYGPYTNEILLGKALKELPRENIQVATKFGFVE 96 (249)
Q Consensus 38 ~~~~~~~~~~l~~A~~~Gi~~~Dta--~~Yg~g~se~~lg~~l~~~~r~~~~I~tK~~~~~ 96 (249)
.++++..+..|+.+++.|+.-+-.+ ..|-..+.|..+|+.-+++.=+.+-+++|+.+..
T Consensus 164 k~De~alr~~Lk~l~~~G~~siav~l~HSyt~P~HE~~v~kiA~e~GF~~vSLSs~l~PMi 224 (1247)
T KOG1939|consen 164 KVDEEALRQDLKELYDKGVKSIAVVLLHSYTYPDHELEVGKIAKEIGFSHVSLSSKLMPMI 224 (1247)
T ss_pred cCCHHHHHHHHHHHHHcCcceEeeeeeccccCCcHHHHHHHHHHHhCccceechhccccce
Confidence 3689999999999999999988653 4454448999999998887788899999998754
No 451
>PRK08636 aspartate aminotransferase; Provisional
Probab=21.43 E-value=3e+02 Score=24.55 Aligned_cols=19 Identities=16% Similarity=0.235 Sum_probs=15.8
Q ss_pred hhHHHHHHHhCCcEEeccc
Q 025707 195 NEIVPLCRELGIGIVPYCP 213 (249)
Q Consensus 195 ~~~~~~~~~~gi~v~a~sp 213 (249)
..++++|+++++.|+.=-+
T Consensus 198 ~~l~~~a~~~~~~II~De~ 216 (403)
T PRK08636 198 ERLVALAKKERFYIISDIA 216 (403)
T ss_pred HHHHHHHHHcCcEEEEecc
Confidence 7899999999999995433
No 452
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=21.24 E-value=1.4e+02 Score=21.94 Aligned_cols=42 Identities=21% Similarity=0.233 Sum_probs=37.6
Q ss_pred CCCHHHHHHHHHHHHHcCCCeEeCCCCcCCCchHHHHHHHHHcC
Q 025707 38 PLSEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKEL 81 (249)
Q Consensus 38 ~~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~g~se~~lg~~l~~~ 81 (249)
.++.+.-..++...++.|.+.=+.|..|| .++..|..|.+..
T Consensus 12 ~ys~EfK~~aV~~~~~~g~sv~evA~e~g--Is~~tl~~W~r~y 53 (121)
T PRK09413 12 RRTTQEKIAIVQQSFEPGMTVSLVARQHG--VAASQLFLWRKQY 53 (121)
T ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHHC--cCHHHHHHHHHHH
Confidence 45788888999999999999999999999 7999999999873
No 453
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=21.23 E-value=5.9e+02 Score=22.69 Aligned_cols=27 Identities=11% Similarity=0.247 Sum_probs=23.2
Q ss_pred CCCHHHHHHHHHHHHHcCCCeEeCCCC
Q 025707 38 PLSEEDGISIIKHAFSKGITFFDTADK 64 (249)
Q Consensus 38 ~~~~~~~~~~l~~A~~~Gi~~~Dta~~ 64 (249)
..+.++-.++++...++||+.|+....
T Consensus 64 ~~s~e~Ki~ia~~L~~~GV~~IEvGs~ 90 (347)
T PLN02746 64 IVPTSVKVELIQRLVSSGLPVVEATSF 90 (347)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEECCC
Confidence 357899999999999999999998743
No 454
>PRK08156 type III secretion system protein SpaS; Validated
Probab=21.20 E-value=28 Score=31.18 Aligned_cols=42 Identities=14% Similarity=0.208 Sum_probs=33.9
Q ss_pred hhHHHHHHHhCCcEEecccCcccccCCCCCCCCCCCCccccc
Q 025707 195 NEIVPLCRELGIGIVPYCPLGRGFFGGKAVVESVPLDSFLVC 236 (249)
Q Consensus 195 ~~~~~~~~~~gi~v~a~spl~~G~l~g~~~~~~~~~~~~~~~ 236 (249)
..+.+.|+++||+|+-.-||++.+...-...+.+|++-|.+.
T Consensus 287 ~~IreiA~e~~VPiven~pLARaLY~~vevg~~IP~ely~AV 328 (361)
T PRK08156 287 LAVRAYAEKVGVPVVRDIKLARRLYKTHRRYSFVSLEDLDEV 328 (361)
T ss_pred HHHHHHHHHCCCCEeeCHHHHHHHHHhCCCCCcCCHHHHHHH
Confidence 779999999999999999999998865555666776655443
No 455
>PF01527 HTH_Tnp_1: Transposase; InterPro: IPR002514 Transposase proteins are necessary for efficient DNA transposition. This family consists of various Escherichia coli insertion elements and other bacterial transposases some of which are members of the IS3 family. This region includes a helix-turn-helix motif (HTH) at the N terminus followed by a leucine zipper (LZ) motif. The LZ motif has been shown to mediate oligomerisation of the transposase components in IS911 []. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated; PDB: 2JN6_A 2RN7_A.
Probab=21.04 E-value=22 Score=23.52 Aligned_cols=40 Identities=20% Similarity=0.234 Sum_probs=34.4
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCCCCcCCCchHHHHHHHHHc
Q 025707 39 LSEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKE 80 (249)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~g~se~~lg~~l~~ 80 (249)
++.+.-..+|..++..|.+.-+.|..|| .+...|..|++.
T Consensus 7 ys~e~K~~~v~~~~~~g~sv~~va~~~g--i~~~~l~~W~~~ 46 (76)
T PF01527_consen 7 YSPEFKLQAVREYLESGESVSEVAREYG--ISPSTLYNWRKQ 46 (76)
T ss_dssp --HHHHHHHHHHHHHHHCHHHHHHHHHT--S-HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCceEeeecccc--cccccccHHHHH
Confidence 5788889999999999999999999999 799999999986
No 456
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=20.92 E-value=4.7e+02 Score=21.42 Aligned_cols=133 Identities=18% Similarity=0.192 Sum_probs=83.8
Q ss_pred CCCCHHHHHHHHHHHHHcCCCeEeCCCCcCCCchHHHHHHHHHcCCCCCeEEEecccccccCCcccccCCCHHHHHHHHH
Q 025707 37 SPLSEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCE 116 (249)
Q Consensus 37 ~~~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~g~se~~lg~~l~~~~r~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~~~ 116 (249)
+..+.++..++++.|.+.|+.-+=..|.|- ....+.|+ ...+-|+|=++.+... .+.+.-...++
T Consensus 13 p~~t~~~i~~lc~~A~~~~~~avcv~p~~v-----~~a~~~l~---~~~v~v~tVigFP~G~-------~~~~~K~~E~~ 77 (211)
T TIGR00126 13 ADTTEEDIITLCAQAKTYKFAAVCVNPSYV-----PLAKELLK---GTEVRICTVVGFPLGA-------STTDVKLYETK 77 (211)
T ss_pred CCCCHHHHHHHHHHHHhhCCcEEEeCHHHH-----HHHHHHcC---CCCCeEEEEeCCCCCC-------CcHHHHHHHHH
Confidence 345889999999999999988776666552 34444443 3478888888765421 23333344455
Q ss_pred HHHHHcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHc--CCe-eEE-EcCCCCHHHHHHHhhc---CCceEEeee
Q 025707 117 ASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEE--GKI-KYI-GLSEASPDTIRRAHAV---HPITAVQLE 185 (249)
Q Consensus 117 ~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~--G~i-r~i-Gvs~~~~~~l~~~~~~---~~~~~~q~~ 185 (249)
+.+ ++|.|-+|+++--..-.+.+.+.+.+.+.+.++. |.. +-| =.+-.+.+++.++... .+.+++...
T Consensus 78 ~Av-~~GAdEiDvv~n~g~l~~g~~~~v~~ei~~i~~~~~g~~lKvIlE~~~L~~~ei~~a~~ia~eaGADfvKTs 152 (211)
T TIGR00126 78 EAI-KYGADEVDMVINIGALKDGNEEVVYDDIRAVVEACAGVLLKVIIETGLLTDEEIRKACEICIDAGADFVKTS 152 (211)
T ss_pred HHH-HcCCCEEEeecchHhhhCCcHHHHHHHHHHHHHHcCCCeEEEEEecCCCCHHHHHHHHHHHHHhCCCEEEeC
Confidence 544 4799999999886543345567777777777764 442 332 1122344555555444 567788887
No 457
>PRK14463 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=20.88 E-value=4.7e+02 Score=23.23 Aligned_cols=71 Identities=13% Similarity=0.130 Sum_probs=45.9
Q ss_pred ccCCCHHHHHHHHHHHHHHcCCCceeEEEeecCCCCCCHHHHHHHHHHHHH-cCC---eeEEEcCCCCH-HHHHHHhh
Q 025707 103 IVKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVE-EGK---IKYIGLSEASP-DTIRRAHA 175 (249)
Q Consensus 103 ~~~~s~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~-~G~---ir~iGvs~~~~-~~l~~~~~ 175 (249)
..+.+++.|.+++....+..+++++ ++.-.-++...++++.++++.+.+ .|. .+.|-||+... ..+.++..
T Consensus 128 ~r~lt~~EI~~qv~~~~~~~~i~~I--vfmG~GEPl~n~~~vi~~l~~l~~~~gl~~s~r~itVsTnGl~~~i~~l~~ 203 (349)
T PRK14463 128 TRNLTTAEIVNQVCAVKRDVPVRNI--VFMGMGEPLANLDNVIPALQILTDPDGLQFSTRKVTVSTSGLVPEMEELGR 203 (349)
T ss_pred CCCCCHHHHHHHHHHHHhcCCccEE--EEecCCcchhcHHHHHHHHHHhhcccccCcCCceEEEECCCchHHHHHHhh
Confidence 3456889999888887766665443 333333444567889999999886 554 46777766443 45555544
No 458
>PRK12468 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=20.86 E-value=30 Score=31.30 Aligned_cols=41 Identities=24% Similarity=0.320 Sum_probs=32.3
Q ss_pred hhHHHHHHHhCCcEEecccCcccccCCCCCCCCCCCCcccc
Q 025707 195 NEIVPLCRELGIGIVPYCPLGRGFFGGKAVVESVPLDSFLV 235 (249)
Q Consensus 195 ~~~~~~~~~~gi~v~a~spl~~G~l~g~~~~~~~~~~~~~~ 235 (249)
..+.+.|+++||+|+-.-||++.+.-.-...+.+|++-|.+
T Consensus 299 ~~Ir~~A~e~~VPiven~pLARaLy~~~evg~~IP~ely~A 339 (386)
T PRK12468 299 LRIRELGAEHRIPLLEAPPLARALFRHSEVGQHIPATLYAA 339 (386)
T ss_pred HHHHHHHHHcCCcEEeCHHHHHHHHHhCCCCCCCCHHHHHH
Confidence 77999999999999999999999886554445566554443
No 459
>PRK12772 bifunctional flagellar biosynthesis protein FliR/FlhB; Provisional
Probab=20.86 E-value=30 Score=33.29 Aligned_cols=42 Identities=19% Similarity=0.345 Sum_probs=35.1
Q ss_pred hhHHHHHHHhCCcEEecccCcccccCCCCCCCCCCCCccccc
Q 025707 195 NEIVPLCRELGIGIVPYCPLGRGFFGGKAVVESVPLDSFLVC 236 (249)
Q Consensus 195 ~~~~~~~~~~gi~v~a~spl~~G~l~g~~~~~~~~~~~~~~~ 236 (249)
..+.+.|+++||+++-.-||++.+...-...+.+|++.+.+.
T Consensus 555 ~~Ir~~A~e~~VPive~~~LAR~Ly~~~evg~~IP~ely~aV 596 (609)
T PRK12772 555 LKIKEIAKENDVPIIENKPLARLIYKKVEIDQEIPQDMYQAV 596 (609)
T ss_pred HHHHHHHHHCCCcEEeCHHHHHHHHHcCCCCCCCCHHHHHHH
Confidence 779999999999999999999999876656667787766554
No 460
>cd08590 PI-PLCc_Rv2075c_like Catalytic domain of uncharacterized Mycobacterium tuberculosis Rv2075c-like proteins. This subfamily corresponds to the catalytic domain present in uncharacterized Mycobacterium tuberculosis Rv2075c and its homologs. Members in this family are more closely related to the Streptomyces antibioticus phosphatidylinositol-specific phospholipase C1(SaPLC1)-like proteins rather than the typical bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13), which participate in Ca2+-independent PI metabolism, hydrolyzing the membrane lipid phosphatidylinositol (PI) to produce phosphorylated myo-inositol and diacylglycerol (DAG). In contrast, SaPLC1-like proteins have two Ca2+-chelating amino acid substitutions which convert them to metal-dependent bacterial PI-PLC. Rv2075c and its homologs have the same amino acid substitutions as well, which might suggest they have metal-dependent PI-PLC activity.
Probab=20.86 E-value=5.3e+02 Score=21.96 Aligned_cols=20 Identities=10% Similarity=0.162 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHcCCeeEEEc
Q 025707 143 ETIGEMKKLVEEGKIKYIGL 162 (249)
Q Consensus 143 ~~~~~l~~l~~~G~ir~iGv 162 (249)
..|-.|++++++|+.--+=.
T Consensus 150 ~~wpTL~em~~~GkrViv~~ 169 (267)
T cd08590 150 PNWPTKEDMLNSGKQVVLAT 169 (267)
T ss_pred CCCCCHHHHHhCCCEEEEEe
Confidence 35788999999998655533
No 461
>cd00338 Ser_Recombinase Serine Recombinase family, catalytic domain; a DNA binding domain may be present either N- or C-terminal to the catalytic domain. These enzymes perform site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and serine recombinase. Serine recombinases demonstrate functional versatility and include resolvases, invertases, integrases, and transposases. Resolvases and invertases (i.e. Tn3, gamma-delta, Tn5044 resolvases, Gin and Hin invertases) in this family contain a C-terminal DNA binding domain and comprise a major phylogenic group. Also included are phage- and bacterial-encoded recombinases such as phiC31 integrase, SpoIVCA excisionase, and Tn4451 TnpX transposase. These integrases and transposases have larger C-terminal domains compared to resolvases/invertases and are referred to as large serine recombinases. Also belonging to this family are protei
Probab=20.85 E-value=2e+02 Score=20.95 Aligned_cols=51 Identities=14% Similarity=0.231 Sum_probs=34.9
Q ss_pred HHHHHHHHHHcCCCceeEEEeecCCCCC-CHHHHHHHHHHHHHcCCeeEEEcC
Q 025707 112 RSCCEASLRRLDVEYIDLYYQHRVDTSV-PIEETIGEMKKLVEEGKIKYIGLS 163 (249)
Q Consensus 112 ~~~~~~sL~~Lg~d~iDl~~lh~~~~~~-~~~~~~~~l~~l~~~G~ir~iGvs 163 (249)
+..+.+.|+.+.....|.+++..++... ...+....++.|...| |+-+-++
T Consensus 51 R~~~~~ll~~~~~~~~d~ivv~~~~Rl~R~~~~~~~~~~~l~~~g-i~l~~~~ 102 (137)
T cd00338 51 RPGLQRLLADVKAGKIDVVLVEKLDRLSRNLVDLLELLELLEAHG-VRVVTAD 102 (137)
T ss_pred CHHHHHHHHHHHcCCCCEEEEEecchhhCCHHHHHHHHHHHHHCC-CEEEEec
Confidence 4556666666665788999999887743 4456777777777765 5555554
No 462
>COG0223 Fmt Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis]
Probab=20.85 E-value=2.3e+02 Score=24.89 Aligned_cols=55 Identities=18% Similarity=0.178 Sum_probs=31.4
Q ss_pred CeeEEEcCCCCHHHHHHHhhcCCceEEeee---cCccccc---hhhhHHHHHHHhCCcEEec
Q 025707 156 KIKYIGLSEASPDTIRRAHAVHPITAVQLE---WSLWARD---IENEIVPLCRELGIGIVPY 211 (249)
Q Consensus 156 ~ir~iGvs~~~~~~l~~~~~~~~~~~~q~~---~n~~~~~---~~~~~~~~~~~~gi~v~a~ 211 (249)
+|-..|..+|+...++.+++.. ++++.+- =....|. ....+-.+|.++||+|..-
T Consensus 3 kivF~GTp~fa~~~L~~L~~~~-~eivaV~Tqpdkp~gR~~~l~~spVk~~A~~~~ipv~qP 63 (307)
T COG0223 3 RIVFFGTPEFAVPSLEALIEAG-HEIVAVVTQPDKPAGRGKKLTPSPVKRLALELGIPVFQP 63 (307)
T ss_pred EEEEEcCchhhHHHHHHHHhCC-CceEEEEeCCCCccCCCCcCCCChHHHHHHHcCCceecc
Confidence 4556777778877888777753 4443332 2222221 0155777777777765543
No 463
>PRK11024 colicin uptake protein TolR; Provisional
Probab=20.83 E-value=2.3e+02 Score=21.40 Aligned_cols=52 Identities=21% Similarity=0.290 Sum_probs=34.2
Q ss_pred CHHHHHHHHHHHHHHcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCCeeEEEcC
Q 025707 107 TPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLS 163 (249)
Q Consensus 107 s~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs 163 (249)
+.+.+...+...+.. .-|...+=..|...+...+.+.|+.+++.| +..+++.
T Consensus 86 ~~~~L~~~l~~~~~~----~~~~~V~i~aD~~~~~~~vv~vmd~~k~aG-~~~v~l~ 137 (141)
T PRK11024 86 PEEQVVAEAKSRFKA----NPKTVFLIGGAKDVPYDEIIKALNLLHSAG-VKSVGLM 137 (141)
T ss_pred CHHHHHHHHHHHHhh----CCCceEEEEcCCCCCHHHHHHHHHHHHHcC-CCeEEEE
Confidence 455555555554443 224334445677888999999999999998 4456664
No 464
>PLN02522 ATP citrate (pro-S)-lyase
Probab=20.82 E-value=2.2e+02 Score=27.48 Aligned_cols=86 Identities=21% Similarity=0.080 Sum_probs=47.9
Q ss_pred CchHHHHHHHHHcCCCCCeEEEeccccccc--C-CcccccCCC----HHHHHHHHHHHHHHcCCCceeEEEeecCCCCCC
Q 025707 68 YTNEILLGKALKELPRENIQVATKFGFVEL--G-FTSVIVKGT----PEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVP 140 (249)
Q Consensus 68 g~se~~lg~~l~~~~r~~~~I~tK~~~~~~--~-~~~~~~~~s----~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~ 140 (249)
+..|+.+.+++++..+++-+|.-|.+.... + .....+..+ ....-+..+..|++-|+ .....+++ -
T Consensus 234 g~~e~~f~ea~~~a~~~KPVVa~kaGrsa~~~~~~aa~gHtGAiag~~~~ta~~k~aAlr~aGv-----~vv~s~~E--l 306 (608)
T PLN02522 234 GRDEYSLVEALKQGKVSKPVVAWVSGTCARLFKSEVQFGHAGAKSGGDMESAQAKNKALKDAGA-----IVPTSFEA--L 306 (608)
T ss_pred chhHHHHHHHHHHhcCCCCEEEEeccCCCccCccccccccccccccCCCccHHHHHHHHHHCCC-----eEeCCHHH--H
Confidence 468888889998755788888999887652 1 111111110 01122556777777775 22222211 1
Q ss_pred HHHHHHHHHHHHHcCCeeEE
Q 025707 141 IEETIGEMKKLVEEGKIKYI 160 (249)
Q Consensus 141 ~~~~~~~l~~l~~~G~ir~i 160 (249)
.+-+.+.+++|+.+|.|.-+
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~ 326 (608)
T PLN02522 307 EAAIKETFEKLVEEGKIIPV 326 (608)
T ss_pred HHHHHHHHHHHHhCCceeec
Confidence 22345557777777776653
No 465
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=20.72 E-value=2.5e+02 Score=22.04 Aligned_cols=43 Identities=19% Similarity=0.331 Sum_probs=28.5
Q ss_pred HHHHHH-HHHcCCCeEeCCCCcCCCchHHHHHHHHHc-CCCCCeEEEe
Q 025707 45 ISIIKH-AFSKGITFFDTADKYGPYTNEILLGKALKE-LPRENIQVAT 90 (249)
Q Consensus 45 ~~~l~~-A~~~Gi~~~Dta~~Yg~g~se~~lg~~l~~-~~r~~~~I~t 90 (249)
...|.. ..+.|++.....-. + +++..|.++|+. ..+.+++|+|
T Consensus 21 ~~~l~~~L~~~G~~v~~~~~v-~--Dd~~~I~~~l~~~~~~~dlVItt 65 (170)
T cd00885 21 AAFLAKELAELGIEVYRVTVV-G--DDEDRIAEALRRASERADLVITT 65 (170)
T ss_pred HHHHHHHHHHCCCEEEEEEEe-C--CCHHHHHHHHHHHHhCCCEEEEC
Confidence 334444 44779987664433 2 467778888876 4578999988
No 466
>TIGR00238 KamA family protein. Note that the E. coli homolog was expressed in E. coli and purified and found not to display display lysine 2,3-aminomutase activity. Active site residues are found in 100 residue extension in B. subtilis. Name changed to KamA family protein.
Probab=20.60 E-value=5.9e+02 Score=22.37 Aligned_cols=102 Identities=17% Similarity=0.142 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHH-cCCCeEeCCCCcCCC--chHHHHHHHH---HcCC-CCCeEEEecccccccCCcccccCCCHHHHHH
Q 025707 41 EEDGISIIKHAFS-KGITFFDTADKYGPY--TNEILLGKAL---KELP-RENIQVATKFGFVELGFTSVIVKGTPEYVRS 113 (249)
Q Consensus 41 ~~~~~~~l~~A~~-~Gi~~~Dta~~Yg~g--~se~~lg~~l---~~~~-r~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~ 113 (249)
.++..++++...+ .|++-+--+. |+. .....+...+ ++.+ -..+-|.|+.... .|..+.+
T Consensus 144 ~~~~~~~i~~i~~~~~i~eV~lsG--GDPLl~~d~~L~~ll~~L~~i~~~~~IRi~tr~~~~-----------~P~rit~ 210 (331)
T TIGR00238 144 KKKWQKALDYIAEHPEIIEILISG--GDPLMAKDHELEWLLKRLEEIPHLVRLRIGTRLPVV-----------IPQRITD 210 (331)
T ss_pred HHHHHHHHHHHHhCCCcCEEEEEC--CccccCCHHHHHHHHHHHHhcCCccEEEeecCCCcc-----------CchhcCH
Confidence 6778888887764 4787655442 221 1222233333 3232 2456677765322 2455666
Q ss_pred HHHHHHHHcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCCe
Q 025707 114 CCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKI 157 (249)
Q Consensus 114 ~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~i 157 (249)
.+-+.|++.|...+.+. |.-...+-.+++.++++.|++.|..
T Consensus 211 el~~~L~~~~~~~~~vs--h~nh~~Ei~~~~~~ai~~L~~aGi~ 252 (331)
T TIGR00238 211 ELCELLASFELQLMLVT--HINHCNEITEEFAEAMKKLRTVNVT 252 (331)
T ss_pred HHHHHHHhcCCcEEEEc--cCCChHhCCHHHHHHHHHHHHcCCE
Confidence 67777888776544333 3222222247789999999999973
No 467
>PLN03233 putative glutamate-tRNA ligase; Provisional
Probab=20.56 E-value=2.6e+02 Score=26.53 Aligned_cols=61 Identities=15% Similarity=0.141 Sum_probs=44.4
Q ss_pred CCHHHHHHHHHHHHHHcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCCHHHHHHHh
Q 025707 106 GTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAH 174 (249)
Q Consensus 106 ~s~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~ 174 (249)
.......+++.+.|+.||+++ |-. .-.+..++...+++++|.++|+.= +|..+.+++++.-
T Consensus 57 R~~~e~~~~I~~dL~WLGl~w-D~~----~~qSdr~~~y~~~a~~Li~~G~AY---~C~cs~eel~~~r 117 (523)
T PLN03233 57 KEKAEFEESIIEDLGKIEIKP-DSV----SFTSDYFEPIRCYAIILIEEGLAY---MDDTPQEEMKKER 117 (523)
T ss_pred ccchHHHHHHHHHHHHhCCCC-CCC----ccccccHHHHHHHHHHHHHcCCeE---ecCCCHHHHHHHH
Confidence 345667889999999999975 521 223455788999999999999852 3566777776553
No 468
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=20.45 E-value=4.4e+02 Score=20.90 Aligned_cols=102 Identities=11% Similarity=0.151 Sum_probs=64.3
Q ss_pred CCeEeCCCCcCCCchHHHHHHHHHcC--CCCCeEEEecccccccCCcccccCCCHHHHHHHHHHHHHHcCCCcee-----
Q 025707 56 ITFFDTADKYGPYTNEILLGKALKEL--PRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLDVEYID----- 128 (249)
Q Consensus 56 i~~~Dta~~Yg~g~se~~lg~~l~~~--~r~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~~Lg~d~iD----- 128 (249)
.-++-.-...+- ..-+.+...++.. ...+++|+.|-- .-..-++++-+..+.+..+|++
T Consensus 26 wgHvQnDnI~~k-~~~~f~~~~l~~L~~~~~~vViaDRNN-------------h~~reR~ql~~~~~~~~~~yl~~~~~~ 91 (168)
T PF08303_consen 26 WGHVQNDNITGK-RKPKFIKAVLELLAKDTHPVVIADRNN-------------HQKRERKQLFEDVSQLKPDYLPYDTNV 91 (168)
T ss_pred CCccccCCCCCC-CHHHHHHHHHHHHhhCCCCEEEEeCCC-------------chHHHHHHHHHHHHHhcccccccCCCe
Confidence 557766666554 4566666666665 778899988843 3445567777777777776665
Q ss_pred -EEEeecCCCCCCHHHHHHH-HHHHHHcCC-eeEEEcCCCCHHHHHH
Q 025707 129 -LYYQHRVDTSVPIEETIGE-MKKLVEEGK-IKYIGLSEASPDTIRR 172 (249)
Q Consensus 129 -l~~lh~~~~~~~~~~~~~~-l~~l~~~G~-ir~iGvs~~~~~~l~~ 172 (249)
++-|||..+. +.+++++. .++..++|- =..|=.+..+...++.
T Consensus 92 r~VaL~fv~~~-~~~~i~~it~~RV~~RGDNHQTika~~~~~~~~~~ 137 (168)
T PF08303_consen 92 RFVALNFVHDD-DLDEIRRITQDRVLARGDNHQTIKADSKDEKKVEG 137 (168)
T ss_pred EEEEEEccCCC-CHHHHHHHHHHHHHhcCcCcceeecCCCCHHHHHH
Confidence 7777886665 77888776 456667772 2334444444444333
No 469
>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases. Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine.
Probab=20.44 E-value=2.2e+02 Score=23.10 Aligned_cols=46 Identities=22% Similarity=0.159 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCCee
Q 025707 108 PEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIK 158 (249)
Q Consensus 108 ~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir 158 (249)
.+...+.+.+.+++||+. .|.+.- .......+.+.++.|.++|.+.
T Consensus 67 ~~~~~~~~~~~~~~L~i~-~d~~~~----es~~~~~~~~~i~~L~~~g~~~ 112 (212)
T cd00671 67 VEESIKADLETYGRLDVR-FDVWFG----ESSYLGLMGKVVELLEELGLLY 112 (212)
T ss_pred HHHHHHHHHHHHHHhCCc-Cceecc----hhhhhhHHHHHHHHHHHCCCEE
Confidence 456778889999999997 577652 1122566777788899888864
No 470
>PF01312 Bac_export_2: FlhB HrpN YscU SpaS Family; InterPro: IPR006135 Salmonella, and related proteobacteria, secrete large amounts of proteins into the culture media. The major secreted proteins are either flagellar proteins or virulence factors [], secreted through the flagellar or virulence export structures respectively. Both secretion systems penetrate the inner and outer membranes and their components bear substantial sequence similarity. Both the flagellar and needle like pilus look fairly similar to each other []. The type III secretion system is of great interest, as it is used to transport virulence factors from the pathogen directly into the host cell [] and is only triggered when the bacterium comes into close contact with the host. It is believed that the family of type III flagellar and pilus inner membrane proteins are used as structural moieties in a complex with several other subunits []. One such set of inner membrane proteins, labeled "S" here for nomenclature purposes, includes the Salmonella and Shigella SpaS, the Yersinia YscU, Rhizobium Y4YO, and the Erwinia HrcU genes, Salmonella FlhB and Escherichia coli EscU [, , , ]. Many of the proteins, in this entry, undergo autocatalytic cleavage promoted by cyclization of a conserved asparagine. These proteins belong to the MEROPS peptidase family N6. ; GO: 0009306 protein secretion, 0016020 membrane; PDB: 3C03_C 3BZT_A 3BZV_B 3BZP_A 3BZX_B 3BZL_B 3C00_A 3BZR_A 3BZY_A 3BZO_A ....
Probab=20.43 E-value=22 Score=31.62 Aligned_cols=41 Identities=27% Similarity=0.429 Sum_probs=29.3
Q ss_pred hhHHHHHHHhCCcEEecccCcccccCCCCCCCCCCCCcccc
Q 025707 195 NEIVPLCRELGIGIVPYCPLGRGFFGGKAVVESVPLDSFLV 235 (249)
Q Consensus 195 ~~~~~~~~~~gi~v~a~spl~~G~l~g~~~~~~~~~~~~~~ 235 (249)
..+.+.|+++||+|+-.-||++.+.......+.+|++.+.+
T Consensus 294 ~~Ir~~A~~~~VPiven~pLARaLy~~~~~g~~IP~ely~a 334 (343)
T PF01312_consen 294 LRIREIAREHGVPIVENPPLARALYRTVEVGQEIPEELYEA 334 (343)
T ss_dssp HHHHHHHHHHT--EEE-HHHHHHHHHHS-TTSB--GGGHHH
T ss_pred HHHHHHHHHcCCCeeeCHHHHHHHHhcCCCCCcCCHHHHHH
Confidence 77999999999999999999999887766666777766554
No 471
>cd01320 ADA Adenosine deaminase (ADA) is a monomeric zinc dependent enzyme which catalyzes the irreversible hydrolytic deamination of both adenosine, as well as desoxyadenosine, to ammonia and inosine or desoxyinosine, respectively. ADA plays an important role in the purine pathway. Low, as well as high levels of ADA activity have been linked to several diseases.
Probab=20.42 E-value=5.5e+02 Score=22.03 Aligned_cols=107 Identities=15% Similarity=0.168 Sum_probs=54.9
Q ss_pred CCHHHHHHHHHHHHHHc---CCCceeEEEeecCCC--CCCHH----HHHHHHHHHHHcCCeeE-EEc---CCCCHHHHHH
Q 025707 106 GTPEYVRSCCEASLRRL---DVEYIDLYYQHRVDT--SVPIE----ETIGEMKKLVEEGKIKY-IGL---SEASPDTIRR 172 (249)
Q Consensus 106 ~s~~~i~~~~~~sL~~L---g~d~iDl~~lh~~~~--~~~~~----~~~~~l~~l~~~G~ir~-iGv---s~~~~~~l~~ 172 (249)
.+++.++......++.+ |+.|+|+..-..... ....+ .+.+++++.+++--|+. +.+ .+.+.+.+++
T Consensus 66 ~~~ed~~~~~~~~~~e~~~~Gvt~~E~~~~p~~~~~~~~~~~~~~~~~~~ai~~~~~~~gi~~~l~~~~~~~~~~~~~~~ 145 (325)
T cd01320 66 QTEEDFERLAYEYLEDAAADGVVYAEIRFSPQLHTRRGLSFDEVVEAVLRGLDEAEAEFGIKARLILCGLRHLSPESAQE 145 (325)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCEEEEEEeCchhhccCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEEEecCCCCHHHHHH
Confidence 35677777666666555 888999764322111 12233 34667777665533332 222 2334444444
Q ss_pred Hhhc----CCceEEeeecCcc----ccchhhhHHHHHHHhCCcEEecc
Q 025707 173 AHAV----HPITAVQLEWSLW----ARDIENEIVPLCRELGIGIVPYC 212 (249)
Q Consensus 173 ~~~~----~~~~~~q~~~n~~----~~~~~~~~~~~~~~~gi~v~a~s 212 (249)
..+. ..-.++-+.+..- .......+++.|+++|+.+....
T Consensus 146 ~~~~~~~~~~~~vvg~~l~~~~~~~~~~~~~~~~~~A~~~g~~v~~H~ 193 (325)
T cd01320 146 TLELALKYRDKGVVGFDLAGDEVGFPPEKFVRAFQRAREAGLRLTAHA 193 (325)
T ss_pred HHHHHHhccCCCEEEeecCCCCCCCCHHHHHHHHHHHHHCCCceEEeC
Confidence 4331 1111233322211 11122788999999998887764
No 472
>PTZ00413 lipoate synthase; Provisional
Probab=20.40 E-value=6.6e+02 Score=22.91 Aligned_cols=160 Identities=13% Similarity=0.195 Sum_probs=86.2
Q ss_pred CCCHHHHHHHHHHHHHcCCCeEeCCCCcCC----CchHHHHHHHHHcCCC--CCeEEEecccccccCCcccccCCCHHHH
Q 025707 38 PLSEEDGISIIKHAFSKGITFFDTADKYGP----YTNEILLGKALKELPR--ENIQVATKFGFVELGFTSVIVKGTPEYV 111 (249)
Q Consensus 38 ~~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~----g~se~~lg~~l~~~~r--~~~~I~tK~~~~~~~~~~~~~~~s~~~i 111 (249)
..+.++..++-+++.+.|++|+=.+....+ +.+ ..+.++++.+.. .++.|..=++-.. .+.+.+
T Consensus 176 ~lD~eEp~~vA~av~~~Gl~~~VVTSv~RDDL~D~ga-~~~a~~I~~Ir~~~p~~~IevligDf~---------g~~e~l 245 (398)
T PTZ00413 176 PLDPNEPEKVAKAVAEMGVDYIVMTMVDRDDLPDGGA-SHVARCVELIKESNPELLLEALVGDFH---------GDLKSV 245 (398)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEEEEcCCCCChhhH-HHHHHHHHHHHccCCCCeEEEcCCccc---------cCHHHH
Confidence 358899999999999999988744444332 222 344455554322 3455544333110 122222
Q ss_pred HHHHHHHHHHcCCCceeEEEeecCCCC-----------CCHHHHHHHHHHHHHc---CCee----EEEcCCCCHHHHHHH
Q 025707 112 RSCCEASLRRLDVEYIDLYYQHRVDTS-----------VPIEETIGEMKKLVEE---GKIK----YIGLSEASPDTIRRA 173 (249)
Q Consensus 112 ~~~~~~sL~~Lg~d~iDl~~lh~~~~~-----------~~~~~~~~~l~~l~~~---G~ir----~iGvs~~~~~~l~~~ 173 (249)
+.|..-|+ |. +-||.+.. ...++.++.|+..++. |... -+|+..-..+.++-+
T Consensus 246 -----~~L~eAG~---dv-ynHNLETv~rLyp~VRt~~atYe~sLe~Lr~AKe~f~~gi~tcSGiIVGLGET~eEvie~m 316 (398)
T PTZ00413 246 -----EKLANSPL---SV-YAHNIECVERITPYVRDRRASYRQSLKVLEHVKEFTNGAMLTKSSIMLGLGETEEEVRQTL 316 (398)
T ss_pred -----HHHHhcCC---CE-EecccccCHhHHHHHccCcCCHHHHHHHHHHHHHHhcCCceEeeeeEecCCCCHHHHHHHH
Confidence 22334444 33 34554332 3477888999888874 3322 246555444333322
Q ss_pred hhc--CCceEEee-ec-C----------ccccchhhhHHHHHHHhCCcEEecccCcc
Q 025707 174 HAV--HPITAVQL-EW-S----------LWARDIENEIVPLCRELGIGIVPYCPLGR 216 (249)
Q Consensus 174 ~~~--~~~~~~q~-~~-n----------~~~~~~~~~~~~~~~~~gi~v~a~spl~~ 216 (249)
... .+++++.+ +| . .+.+...+.+-+++.+.|...++.+||-.
T Consensus 317 ~dLrelGVDivtIGQYL~Ps~~h~~V~~yv~P~~F~~~~~~a~~~Gf~~v~sgPlVR 373 (398)
T PTZ00413 317 RDLRTAGVSAVTLGQYLQPTKTRLKVSRYAHPKEFEMWEEEAMKMGFLYCASGPLVR 373 (398)
T ss_pred HHHHHcCCcEEeeccccCCCcccCCceeccCHHHHHHHHHHHHHcCCceEEecCccc
Confidence 222 34444433 11 0 11122227788889999999999999864
No 473
>TIGR03586 PseI pseudaminic acid synthase.
Probab=20.36 E-value=6e+02 Score=22.42 Aligned_cols=130 Identities=18% Similarity=0.191 Sum_probs=71.7
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCCCCcCCCchHHHHHHH-----------------HHc--CCCCCeEEEecccccccCC
Q 025707 39 LSEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKA-----------------LKE--LPRENIQVATKFGFVELGF 99 (249)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~g~se~~lg~~-----------------l~~--~~r~~~~I~tK~~~~~~~~ 99 (249)
.+.+...++.+++-+.|+.++=|.-.-. +-..+-+. |+. .....++++|=.
T Consensus 74 l~~e~~~~L~~~~~~~Gi~~~stpfd~~---svd~l~~~~v~~~KI~S~~~~n~~LL~~va~~gkPvilstG~------- 143 (327)
T TIGR03586 74 TPWEWHKELFERAKELGLTIFSSPFDET---AVDFLESLDVPAYKIASFEITDLPLIRYVAKTGKPIIMSTGI------- 143 (327)
T ss_pred CCHHHHHHHHHHHHHhCCcEEEccCCHH---HHHHHHHcCCCEEEECCccccCHHHHHHHHhcCCcEEEECCC-------
Confidence 5678888899999999999986654221 11111110 000 122334443322
Q ss_pred cccccCCCHHHHHHHHHHHHHHcCCCceeEEEeecCCCCC-CHHH-HHHHHHHHHHcCCeeEEEcCCCCHHHHHHHhhc-
Q 025707 100 TSVIVKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSV-PIEE-TIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAV- 176 (249)
Q Consensus 100 ~~~~~~~s~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~-~~~~-~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~- 176 (249)
.+.+.+..+++...+ -|. -|+.++|+..... +.+. -+.++..|++.=. .-||+|.|+..........
T Consensus 144 ------~t~~Ei~~Av~~i~~-~g~--~~i~LlhC~s~YP~~~~~~nL~~i~~lk~~f~-~pVG~SDHt~G~~~~~aAva 213 (327)
T TIGR03586 144 ------ATLEEIQEAVEACRE-AGC--KDLVLLKCTSSYPAPLEDANLRTIPDLAERFN-VPVGLSDHTLGILAPVAAVA 213 (327)
T ss_pred ------CCHHHHHHHHHHHHH-CCC--CcEEEEecCCCCCCCcccCCHHHHHHHHHHhC-CCEEeeCCCCchHHHHHHHH
Confidence 257778888877653 343 3789999875532 2222 3556666665433 4799999987543333222
Q ss_pred CCceEEeeecCc
Q 025707 177 HPITAVQLEWSL 188 (249)
Q Consensus 177 ~~~~~~q~~~n~ 188 (249)
.+.+++.-.+.+
T Consensus 214 ~GA~iIEkH~tl 225 (327)
T TIGR03586 214 LGACVIEKHFTL 225 (327)
T ss_pred cCCCEEEeCCCh
Confidence 233344444443
No 474
>PLN02321 2-isopropylmalate synthase
Probab=20.35 E-value=8.1e+02 Score=23.91 Aligned_cols=85 Identities=14% Similarity=0.108 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHcCCCeEeCCCCcCCCchHHHHHHHHHc---CCCCCeEEEecccccccCCcccccCCCHHHHHHHHHHH
Q 025707 42 EDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKE---LPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEAS 118 (249)
Q Consensus 42 ~~~~~~l~~A~~~Gi~~~Dta~~Yg~g~se~~lg~~l~~---~~r~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~~~~s 118 (249)
+.+.++++.|.+.|...+..+.-++.-.....+-+.++. ..-+.|.|..-++.. .|..+.+.++..
T Consensus 210 ~~~~~~V~~Ak~~G~~~v~fs~EDa~rtd~d~l~~~~~~a~~aGa~~I~L~DTvG~~-----------~P~~v~~li~~l 278 (632)
T PLN02321 210 EIARDMVKYARSLGCEDVEFSPEDAGRSDPEFLYRILGEVIKAGATTLNIPDTVGYT-----------LPSEFGQLIADI 278 (632)
T ss_pred HHHHHHHHHHHHcCCceEEEecccCCCCCHHHHHHHHHHHHHcCCCEEEecccccCC-----------CHHHHHHHHHHH
Confidence 446667778888887433333322221233333333333 456778888777753 588888888888
Q ss_pred HHHcCC-CceeEEEeecCCCC
Q 025707 119 LRRLDV-EYIDLYYQHRVDTS 138 (249)
Q Consensus 119 L~~Lg~-d~iDl~~lh~~~~~ 138 (249)
.+++.. +.+ .+-+|..++.
T Consensus 279 ~~~~~~~~~v-~i~vH~HND~ 298 (632)
T PLN02321 279 KANTPGIENV-IISTHCQNDL 298 (632)
T ss_pred HHhcCCCCCc-eEEEEeCCCC
Confidence 888753 222 2577887663
No 475
>COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism]
Probab=20.33 E-value=5.2e+02 Score=21.63 Aligned_cols=76 Identities=20% Similarity=0.219 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCCCCcCCCchHHHHHHHHHcCCCCCeEEEecccccccCCcccccCCCHHHHHHHHHHH
Q 025707 39 LSEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEAS 118 (249)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~g~se~~lg~~l~~~~r~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~~~~s 118 (249)
.++++..++.+.++++|..|+-||-.+..+.+-..--+.+++.-..++=|=.=.+... .+....-++..
T Consensus 137 Lt~ee~~~A~~i~~~aGAdFVKTSTGf~~~gAT~edv~lM~~~vg~~vgvKaSGGIrt-----------~eda~~~i~ag 205 (228)
T COG0274 137 LTDEEKRKACEIAIEAGADFVKTSTGFSAGGATVEDVKLMKETVGGRVGVKASGGIRT-----------AEDAKAMIEAG 205 (228)
T ss_pred cCHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHhccCceeeccCCcCC-----------HHHHHHHHHHh
Q ss_pred HHHcCCC
Q 025707 119 LRRLDVE 125 (249)
Q Consensus 119 L~~Lg~d 125 (249)
..|+|+.
T Consensus 206 a~RiGtS 212 (228)
T COG0274 206 ATRIGTS 212 (228)
T ss_pred HHHhccc
No 476
>PRK12615 galactose-6-phosphate isomerase subunit LacB; Reviewed
Probab=20.33 E-value=4.5e+02 Score=20.91 Aligned_cols=97 Identities=9% Similarity=0.023 Sum_probs=67.6
Q ss_pred CCHHHHHHHHHHHHHHcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCCe-eEEEcCCCCHHHHHHHhhcCCceEEee
Q 025707 106 GTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKI-KYIGLSEASPDTIRRAHAVHPITAVQL 184 (249)
Q Consensus 106 ~s~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~i-r~iGvs~~~~~~l~~~~~~~~~~~~q~ 184 (249)
+.--.+.+.|.+-|+..|.+.+|+-- +. .++.+..+....+.+.+.+|.. +.|-+|....-.-..+.+...+.+..+
T Consensus 9 haG~~lK~~l~~~L~~~G~eV~D~G~-~~-~~~~dYpd~a~~va~~V~~g~~d~GIliCGTGiG~siaANK~~GIRAA~~ 86 (171)
T PRK12615 9 HIVTNEKMAVSDFLKSKGYDVIDCGT-YD-HTRTHYPIFGKKVGEAVVNGQADLGVCICGTGVGINNAVNKVPGIRSALV 86 (171)
T ss_pred chhHHHHHHHHHHHHHCCCEEEEcCC-CC-CCCCChHHHHHHHHHHHHcCCCCEEEEEcCCcHHHHHHHhcCCCeEEEEe
Confidence 44566889999999999998888642 32 2346677888888888888886 788888888766666666666666555
Q ss_pred ecCccccchhhhHHHHHHHh-CCcEEecc
Q 025707 185 EWSLWARDIENEIVPLCREL-GIGIVPYC 212 (249)
Q Consensus 185 ~~n~~~~~~~~~~~~~~~~~-gi~v~a~s 212 (249)
. +......+++| +..|+++.
T Consensus 87 ~--------d~~~A~~ar~hNnaNVL~lG 107 (171)
T PRK12615 87 R--------DMTTALYAKEELNANVIGFG 107 (171)
T ss_pred C--------CHHHHHHHHHhcCCcEEEEC
Confidence 2 12344455554 67777655
No 477
>PF02525 Flavodoxin_2: Flavodoxin-like fold; InterPro: IPR003680 This family consists of a domain with a flavodoxin-like fold. The family includes bacterial and eukaryotic NAD(P)H dehydrogenase (quinone) 1.6.99.2 from EC. These enzymes catalyse the NAD(P)H-dependent two-electron reductions of quinones and protect cells against damage by free radicals and reactive oxygen species []. This enzyme uses a FAD cofactor. The equation for this reaction is NAD(P)H + acceptor = NAD(P)(+) + reduced acceptor. This enzyme is also involved in the bioactivation of prodrugs used in chemotherapy []. The family also includes acyl carrier protein phosphodiesterase 3.1.4.14 from EC. This enzyme converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine residue from ACP []. This family is related to FMN_red IPR005025 from INTERPRO and Flavodoxin_1 IPR008254 from INTERPRO.; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050662 coenzyme binding; PDB: 1T5B_B 1DXQ_B 2B3D_A 2Z9D_B 2Z9C_A 2Z98_A 2D5I_A 2Z9B_A 1TIK_A 1V4B_A ....
Probab=20.33 E-value=4.4e+02 Score=20.79 Aligned_cols=101 Identities=16% Similarity=0.088 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHcCCCeEeCCCC-cCCCchHHHHHHHHHcCCCCCeEEEeccccc-ccCCcccccCCCHHHHHHHHHHH
Q 025707 41 EEDGISIIKHAFSKGITFFDTADK-YGPYTNEILLGKALKELPRENIQVATKFGFV-ELGFTSVIVKGTPEYVRSCCEAS 118 (249)
Q Consensus 41 ~~~~~~~l~~A~~~Gi~~~Dta~~-Yg~g~se~~lg~~l~~~~r~~~~I~tK~~~~-~~~~~~~~~~~s~~~i~~~~~~s 118 (249)
+...+.-++.-+..|..+ .+... |+ .... | ..+++.+.+-.+.. ......-.+....+.+...++..
T Consensus 94 Pa~lK~~iD~v~~~g~~~-~~~~g~~~---~~~~----L---~gKk~~~i~t~g~~~~~~~~~g~~~~~~~~~~~~~~~~ 162 (199)
T PF02525_consen 94 PAQLKGWIDRVFTPGFTF-YTPDGKYP---SGGL----L---KGKKALLIVTSGGPEYSYGPPGIPGRSMDHLLPYLRGI 162 (199)
T ss_dssp -HHHHHHHHHHSHTTTSE-EETTSTTC---GEES----T---TTSEEEEEEEESSSGGGGSTTSSTTSHHHHHHHHHHHH
T ss_pred ChhHHHHHHHhCcCCeee-eccccccc---cccc----c---ccccEEEEEcCCCChHHhcccCCCCCChhhhHHHHHHH
Confidence 577899999999999988 66543 32 0111 1 23344444443332 21100001123457777779999
Q ss_pred HHHcCCCceeEEEeecCCCCCCHHHHHHHHHHHH
Q 025707 119 LRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLV 152 (249)
Q Consensus 119 L~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~ 152 (249)
++-+|++.++.+.++..+....-+..-++++++.
T Consensus 163 ~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (199)
T PF02525_consen 163 LKFCGIKDVESFSFEGVDNPDREEALEKALERAA 196 (199)
T ss_dssp HHHTTEEEEEEEEEESTTTCCHHHHHHHHHHHHH
T ss_pred HHhCCCceeeEEEEeCCCCCChHHHHHHHHHHHH
Confidence 9999999999999998763232222334444443
No 478
>PRK04820 rnpA ribonuclease P; Reviewed
Probab=20.31 E-value=4.1e+02 Score=20.44 Aligned_cols=64 Identities=14% Similarity=0.143 Sum_probs=41.0
Q ss_pred CCCCeEEEecccccccCCcccccCCCHHHHHHHHHHHHHHcC--CCceeEEEeecCCC-CCCHHHHHHHHHHHHHc
Q 025707 82 PRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLD--VEYIDLYYQHRVDT-SVPIEETIGEMKKLVEE 154 (249)
Q Consensus 82 ~r~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~~Lg--~d~iDl~~lh~~~~-~~~~~~~~~~l~~l~~~ 154 (249)
.|=-+.|+-|++... ..+..+++.+.++++.+. +...|++++..+.. ..+..++.+.|.+|.+.
T Consensus 48 ~RlG~sVSKKvg~~A---------V~RNRiKR~lRE~fR~~~~~l~~~DiVviar~~~~~~~~~~l~~~l~~LL~k 114 (145)
T PRK04820 48 PRLGLAVSRKVDTRA---------VGRNRIKRVLREAMRQLLPELAPGDYVVVARSAAAKASNPQLRDAFLRLLRR 114 (145)
T ss_pred cEEEEEEeccccCcc---------hhHHHHHHHHHHHHHHhhhccCCCCEEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 455567777764222 346667777777766542 23449888877654 45677888888877765
No 479
>COG0623 FabI Enoyl-[acyl-carrier-protein]
Probab=20.27 E-value=2.2e+02 Score=24.12 Aligned_cols=22 Identities=18% Similarity=0.063 Sum_probs=13.8
Q ss_pred CHHHHHHHHHHHHHcCCCeEeC
Q 025707 40 SEEDGISIIKHAFSKGITFFDT 61 (249)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~Dt 61 (249)
+...+--+-+.+.++|-.+.-|
T Consensus 17 ~rSIAwGIAk~l~~~GAeL~fT 38 (259)
T COG0623 17 NRSIAWGIAKALAEQGAELAFT 38 (259)
T ss_pred cccHHHHHHHHHHHcCCEEEEE
Confidence 4555666666666777766544
No 480
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=20.24 E-value=6e+02 Score=22.32 Aligned_cols=133 Identities=11% Similarity=0.103 Sum_probs=72.8
Q ss_pred CHHHHHHHHHHHHHcCCCeEe----------CCCCcCCC--chHHHHHHHHHcCC-CCCeEEEecccccccCCcccccCC
Q 025707 40 SEEDGISIIKHAFSKGITFFD----------TADKYGPY--TNEILLGKALKELP-RENIQVATKFGFVELGFTSVIVKG 106 (249)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~D----------ta~~Yg~g--~se~~lg~~l~~~~-r~~~~I~tK~~~~~~~~~~~~~~~ 106 (249)
+.++..+..+.+.+.|+..|| +...||.. ..-+.+.+.++... .-.+-|+.|+...... ..
T Consensus 75 ~p~~~~~aA~~~~~~g~d~IdlN~gCP~~~v~~~~~Gs~L~~~p~~~~eiv~avr~~v~~pVsvKiR~g~~~------~~ 148 (333)
T PRK11815 75 DPADLAEAAKLAEDWGYDEINLNVGCPSDRVQNGRFGACLMAEPELVADCVKAMKDAVSIPVTVKHRIGIDD------QD 148 (333)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEcCCCCHHHccCCCeeeHHhcCHHHHHHHHHHHHHHcCCceEEEEEeeeCC------Cc
Confidence 678888888899999999998 34456631 23344444554421 1135677776322110 11
Q ss_pred CHHHHHHHHHHHHHHcCCCceeEEEeecCCC-CCCHH---------HHHHHHHHHHHcC-CeeEEEcCC-CCHHHHHHHh
Q 025707 107 TPEYVRSCCEASLRRLDVEYIDLYYQHRVDT-SVPIE---------ETIGEMKKLVEEG-KIKYIGLSE-ASPDTIRRAH 174 (249)
Q Consensus 107 s~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~-~~~~~---------~~~~~l~~l~~~G-~ir~iGvs~-~~~~~l~~~~ 174 (249)
+.+.. ..+-+.|+..|+ |.+.+|.... ..... -.|+.+.++++.- .|--||... .+++.+.+++
T Consensus 149 t~~~~-~~~~~~l~~aG~---d~i~vh~Rt~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~iPVI~nGgI~s~eda~~~l 224 (333)
T PRK11815 149 SYEFL-CDFVDTVAEAGC---DTFIVHARKAWLKGLSPKENREIPPLDYDRVYRLKRDFPHLTIEINGGIKTLEEAKEHL 224 (333)
T ss_pred CHHHH-HHHHHHHHHhCC---CEEEEcCCchhhcCCCccccccCCCcCHHHHHHHHHhCCCCeEEEECCcCCHHHHHHHH
Confidence 11111 233444566675 6677885432 00000 1266777777763 677777665 4667777776
Q ss_pred hcCCceEEee
Q 025707 175 AVHPITAVQL 184 (249)
Q Consensus 175 ~~~~~~~~q~ 184 (249)
+. .+.+++
T Consensus 225 ~~--aDgVmI 232 (333)
T PRK11815 225 QH--VDGVMI 232 (333)
T ss_pred hc--CCEEEE
Confidence 53 555555
No 481
>PRK10060 RNase II stability modulator; Provisional
Probab=20.22 E-value=7.9e+02 Score=23.76 Aligned_cols=111 Identities=17% Similarity=0.278 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHHcCCCceeEEEeecCCC--CCCHHHHHHHHHHHHHcCCeeEEEcCCCCH--HHHHHHhhcCCceEEee
Q 025707 109 EYVRSCCEASLRRLDVEYIDLYYQHRVDT--SVPIEETIGEMKKLVEEGKIKYIGLSEASP--DTIRRAHAVHPITAVQL 184 (249)
Q Consensus 109 ~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~--~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~--~~l~~~~~~~~~~~~q~ 184 (249)
+.+...+.+.|++.+++. ..+.+.-... ..+.+.+.+.+.+|++.|- .|.+.+|.. ..+..+ ...+++.+-+
T Consensus 507 ~~~~~~l~~~l~~~~~~~-~~l~lEitE~~~~~~~~~~~~~l~~L~~~G~--~ialDdfGtg~ssl~~L-~~l~~d~iKi 582 (663)
T PRK10060 507 QTIFTALKQALQELNFEY-CPIDVELTESCLIENEELALSVIQQFSQLGA--QVHLDDFGTGYSSLSQL-ARFPIDAIKL 582 (663)
T ss_pred CcHHHHHHHHHHHHCcCc-ceEEEEECCchhhcCHHHHHHHHHHHHHCCC--EEEEECCCCchhhHHHH-HhCCCCEEEE
Confidence 346677888888888643 3344433332 3456778899999999998 777776653 334333 3346677666
Q ss_pred ecCccc--------cchhhhHHHHHHHhCCcEEeccc---------------CcccccCCCC
Q 025707 185 EWSLWA--------RDIENEIVPLCRELGIGIVPYCP---------------LGRGFFGGKA 223 (249)
Q Consensus 185 ~~n~~~--------~~~~~~~~~~~~~~gi~v~a~sp---------------l~~G~l~g~~ 223 (249)
+-+++. +..-..++..|++.|+.|+|-.. +.+|++.+++
T Consensus 583 D~sfv~~i~~~~~~~~~v~~ii~~a~~lg~~viAeGVEt~~q~~~l~~~G~d~~QGy~~~~P 644 (663)
T PRK10060 583 DQSFVRDIHKQPVSQSLVRAIVAVAQALNLQVIAEGVETAKEDAFLTKNGVNERQGFLFAKP 644 (663)
T ss_pred CHHHHhccccCcchHHHHHHHHHHHHHCCCcEEEecCCCHHHHHHHHHcCCCEEecCccCCC
Confidence 544332 22227789999999999997654 5678888774
No 482
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated
Probab=20.21 E-value=2.3e+02 Score=26.24 Aligned_cols=91 Identities=15% Similarity=0.164 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHc-CCCeEeCCCCcCCCchHHHHHHHHHcCCCCCeEEEecccccccCCcccccCCCHHHHHHHHHHHHH
Q 025707 42 EDGISIIKHAFSK-GITFFDTADKYGPYTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLR 120 (249)
Q Consensus 42 ~~~~~~l~~A~~~-Gi~~~Dta~~Yg~g~se~~lg~~l~~~~r~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~ 120 (249)
-...+++.+.++. |++.+-....-. ...+++-++-+. +... .--.+...+.+.+.++
T Consensus 45 ~v~~Dvl~R~lr~~G~~V~~v~~~tD--~ddki~~~A~~~------------g~~~--------~e~~~~~~~~f~~~~~ 102 (463)
T PRK00260 45 FVVFDVLRRYLRYLGYKVTYVRNITD--IDDKIIKRANEE------------GESI--------KELTERYIAAFHEDMD 102 (463)
T ss_pred HHHHHHHHHHHHhcCCceEEeecCCC--CcHHHHHHHHHc------------CCCH--------HHHHHHHHHHHHHHHH
Confidence 3445566666544 877776544332 234455444331 1000 0114567788999999
Q ss_pred HcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCCee
Q 025707 121 RLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIK 158 (249)
Q Consensus 121 ~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir 158 (249)
+||+...|.+ +......+++.+..++|.++|.+-
T Consensus 103 ~Lgi~~~d~~----~r~t~~~~~~~~~i~~L~~kG~aY 136 (463)
T PRK00260 103 ALNVLPPDIE----PRATEHIPEIIELIERLIDKGHAY 136 (463)
T ss_pred HcCCCCCCcc----ccccccHHHHHHHHHHHHHCCCEE
Confidence 9999777754 333356788889999999999985
No 483
>TIGR03558 oxido_grp_1 luciferase family oxidoreductase, group 1. The Pfam domain family pfam00296 is named for luciferase-like monooxygenases, but the family also contains several coenzyme F420-dependent enzymes. This protein family represents a well-resolved clade within family pfam00296 and shows no restriction to coenzyme F420-positive species, unlike some other clades within pfam00296.
Probab=20.02 E-value=2.9e+02 Score=23.97 Aligned_cols=41 Identities=24% Similarity=0.244 Sum_probs=27.7
Q ss_pred CCHHHHHHHHHHHHHHcCCCceeEEEeecCCCCCCHHHHHHHHHHH
Q 025707 106 GTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKL 151 (249)
Q Consensus 106 ~s~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l 151 (249)
.+|+.+.+.|++..+.+|+|++ +++.. ..+.++.++.++.+
T Consensus 280 Gspe~v~~~l~~~~~~~G~d~~---~~~~~--~~~~~~~~~s~~l~ 320 (323)
T TIGR03558 280 GSPETVREQLEALAERTGADEL---MVTTP--IYDHEARLRSYELL 320 (323)
T ss_pred cCHHHHHHHHHHHHHHHCCCEE---EEECC--CCCHHHHHHHHHHH
Confidence 4789999999998888998763 33322 24455666665544
Done!