BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025708
(249 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3M7F|B Chain B, Crystal Structure Of The Nedd4 C2GRB10 SH2 COMPLEX
Length = 176
Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 85/169 (50%), Gaps = 25/169 (14%)
Query: 94 LLKVKVVKGINLAIRDMM-SSDPYVVLRLGQ------QTVQTTIVKSNLNPVWNEELMLS 146
+++VKV+ GI LA +D++ +SDPYV + L +VQT +K +LNP WNEE++
Sbjct: 9 VVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFR 68
Query: 147 VPQEYGPVKLEVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDD 206
V + + EVFD + + DD +G+ ++ + PL T P F D
Sbjct: 69 VLPQRHRILFEVFDENRLTRDDFLGQVDVPLYPLPTENPRMERPYTFK-----------D 117
Query: 207 NALLEDSTINIIDGKVKQKISL------KLQNVESGELELELEWMPLDQ 249
L S + + G ++ K++ + +N + E ELE W+ LDQ
Sbjct: 118 FVLHPRSHKSRVKGYLRLKMTYLPKNGSEDENADQAE-ELEPGWVVLDQ 165
>pdb|3B7Y|A Chain A, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin-
Protein Ligase Nedd4
pdb|3B7Y|B Chain B, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin-
Protein Ligase Nedd4
Length = 153
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 65/124 (52%), Gaps = 16/124 (12%)
Query: 89 VEFIGLL---------KVKVVKGINLAIRDMM-SSDPYVVLRLGQ------QTVQTTIVK 132
VE GLL +V+V+ GI LA +D++ +SDPYV + L +VQT +K
Sbjct: 7 VEVFGLLEDEENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIK 66
Query: 133 SNLNPVWNEELMLSVPQEYGPVKLEVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEM 192
+LNP WNEE++ V + + EVFD + + DD +G+ ++ + PL T P
Sbjct: 67 KSLNPKWNEEILFRVHPQQHRLLFEVFDENRLTRDDFLGQVDVPLYPLPTENPRLERPYT 126
Query: 193 FGNM 196
F +
Sbjct: 127 FKDF 130
>pdb|2NSQ|A Chain A, Crystal Structure Of The C2 Domain Of The Human E3
Ubiquitin-Protein Ligase Nedd4-Like Protein
Length = 155
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 56/111 (50%), Gaps = 8/111 (7%)
Query: 94 LLKVKVVKGINLAIRDMM-SSDPYVVLRLG-------QQTVQTTIVKSNLNPVWNEELML 145
+L+VKVV GI+LA +D+ +SDPYV L L VQT +K LNP WNEE
Sbjct: 22 ILRVKVVSGIDLAKKDIFGASDPYVKLSLYVADENRELALVQTKTIKKTLNPKWNEEFYF 81
Query: 146 SVPQEYGPVKLEVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNM 196
V + EVFD + + DD +G+ ++ + L T P F +
Sbjct: 82 RVNPSNHRLLFEVFDENRLTRDDFLGQVDVPLSHLPTEDPTMERPYTFKDF 132
>pdb|2EP6|A Chain A, Solution Structure Of The Second C2 Domain From Human
Mctp2 Protein
Length = 133
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 53/97 (54%), Gaps = 4/97 (4%)
Query: 87 GMVEFIGLLKVKVVKGINLAIRDMMS-SDPYVVLRLGQQTVQTTIVKSNLNPVWNEELML 145
G V+ +G+L+VKV+K +L D SDP+ +L LG +QT V NLNP WN+
Sbjct: 7 GDVKDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTF 66
Query: 146 SVPQEYGPVKLEVFDHDTFSADDIMGEAEIDIQPLLT 182
+ + +++ VFD D D +G+ I PLL+
Sbjct: 67 PIKDIHDVLEVTVFDEDGDKPPDFLGKVAI---PLLS 100
>pdb|3JZY|A Chain A, Crystal Structure Of Human Intersectin 2 C2 Domain
Length = 510
Score = 57.4 bits (137), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 46/93 (49%), Gaps = 2/93 (2%)
Query: 92 IGLLKVKVVKGINL-AIRDMMSSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQE 150
IG L V V++ L A + S+PY + +G Q+ T ++ LNP WN +
Sbjct: 386 IGRLMVHVIEATELKACKPNGKSNPYCEISMGSQSYTTRTIQDTLNPKWNFNCQFFIKDL 445
Query: 151 YGPV-KLEVFDHDTFSADDIMGEAEIDIQPLLT 182
Y V L +FD D FS DD +G EI + + T
Sbjct: 446 YQDVLCLTLFDRDQFSPDDFLGRTEIPVAKIRT 478
>pdb|3KWT|A Chain A, Munc13-1 C2b-Domain, Calcium-Free
pdb|3KWU|A Chain A, Munc13-1 C2b-Domain, Calcium Bound
Length = 148
Score = 50.8 bits (120), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 48/106 (45%), Gaps = 12/106 (11%)
Query: 87 GMVEFIGLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELML 145
G ++ + + VV L +D SSDPYV +++G+ +T + NLNPVW E
Sbjct: 11 GTSKWSAKISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHF 70
Query: 146 SVPQEYGPVKLEVFDHD-----------TFSADDIMGEAEIDIQPL 180
+K+ V D D +DD +G+ I+++ L
Sbjct: 71 ECHNSSDRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTL 116
>pdb|1DQV|A Chain A, Crystal Structure Of Synaptotagmin Iii C2aC2B
Length = 296
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 50/89 (56%), Gaps = 7/89 (7%)
Query: 95 LKVKVVKGINLAIRDMMS-SDPYVVLRL---GQQTVQTTIVKSNLNPVWNEELMLSVP-Q 149
L V++++ ++L +D SDPYV + L ++ QT + + LNP++NE SVP
Sbjct: 22 LVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLA 81
Query: 150 EYGPVKLE--VFDHDTFSADDIMGEAEID 176
E KL V+D D FS D++G+ +D
Sbjct: 82 ELAQRKLHFSVYDFDRFSRHDLIGQVVLD 110
Score = 47.4 bits (111), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 57/111 (51%), Gaps = 16/111 (14%)
Query: 81 SQKKDVGMVEF-------IGLLKVKVVKGINLAIRDMMS-SDPYVVLRL---GQQ--TVQ 127
S+K D+G + F GLL V ++K NL D+ SDPYV L G++ +
Sbjct: 133 SEKADLGELNFSLCYLPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRK 192
Query: 128 TTIVKSNLNPVWNEELMLSV-PQEYGPVKLE--VFDHDTFSADDIMGEAEI 175
T+I K+ LNP +NE L+ V P+ V L V D+D ++++G +
Sbjct: 193 TSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRV 243
>pdb|3HN8|A Chain A, Crystal Structure Of Synaptotagmin
pdb|3HN8|B Chain B, Crystal Structure Of Synaptotagmin
pdb|3HN8|C Chain C, Crystal Structure Of Synaptotagmin
Length = 296
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 50/89 (56%), Gaps = 7/89 (7%)
Query: 95 LKVKVVKGINLAIRDMMS-SDPYVVLRL---GQQTVQTTIVKSNLNPVWNEELMLSVP-Q 149
L V++++ ++L +D SDPYV + L ++ QT + + LNP++NE SVP
Sbjct: 23 LVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLA 82
Query: 150 EYGPVKLE--VFDHDTFSADDIMGEAEID 176
E KL V+D D FS D++G+ +D
Sbjct: 83 ELAQRKLHFSVYDFDRFSRHDLIGQVVLD 111
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 57/111 (51%), Gaps = 16/111 (14%)
Query: 81 SQKKDVGMVEF-------IGLLKVKVVKGINLAIRDMMS-SDPYVVLRL---GQQ--TVQ 127
S+K D+G + F GLL V ++K NL D+ SDPYV L G++ +
Sbjct: 134 SEKADLGELNFSLCYLPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRK 193
Query: 128 TTIVKSNLNPVWNEELMLSV-PQEYGPVKLE--VFDHDTFSADDIMGEAEI 175
T+I K+ LNP +NE L+ V P+ V L V D+D ++++G +
Sbjct: 194 TSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRV 244
>pdb|1WFJ|A Chain A, C2 Domain-Containing Protein From Putative Elicitor-
Responsive Gene
Length = 136
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 2/91 (2%)
Query: 93 GLLKVKVVKGINLAIRDMMSS-DPYVVLRLGQQTVQTTIVKS-NLNPVWNEELMLSVPQE 150
G L+V +V L D +++ DPYV L Q ++ + + P WNE + +V +
Sbjct: 10 GTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEG 69
Query: 151 YGPVKLEVFDHDTFSADDIMGEAEIDIQPLL 181
+K ++FD D + DD +GEA I ++P+
Sbjct: 70 TTELKAKIFDKDVGTEDDAVGEATIPLEPVF 100
>pdb|2D8K|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin
Vii
Length = 141
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 59/110 (53%), Gaps = 15/110 (13%)
Query: 83 KKDVGMVEF-IGL------LKVKVVKGINLAIRDMM-SSDPYVVLRL---GQQTVQTTIV 131
++++G ++F +G L VK++K L +D +SDP+V + L + ++T +
Sbjct: 9 RENLGRIQFSVGYNFQESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVK 68
Query: 132 KSNLNPVWNEELML-SVPQE---YGPVKLEVFDHDTFSADDIMGEAEIDI 177
+ NLNP WNE + P E + L+V D+D FS +D +GE I +
Sbjct: 69 RKNLNPHWNETFLFEGFPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPL 118
>pdb|1BYN|A Chain A, Solution Structure Of The Calcium-Bound First C2-Domain Of
Synaptotagmin I
pdb|2K8M|A Chain A, S100a13-C2a Binary Complex Structure
pdb|2K8M|D Chain D, S100a13-C2a Binary Complex Structure
pdb|2K45|A Chain A, C2a Domain Of Synaptototagmin I Solution Structure In The
Fgf-1-C2a Binary Complex: Key Component In The
Fibroblast Growthfactor Non-Classical Pathway
pdb|2K4A|A Chain A, Fgf-1-C2a Binary Complex Structure: A Key Component In The
Fibroblast Growthfactor Non-Classical Pathway
pdb|2KI6|A Chain A, The Fgf1-S100a13-C2a Hetero-Hexameric Complex Structure: A
C In The Non-Classical Pathway For Fgf1 Secretion
pdb|2KI6|F Chain F, The Fgf1-S100a13-C2a Hetero-Hexameric Complex Structure: A
C In The Non-Classical Pathway For Fgf1 Secretion
Length = 128
Score = 47.4 bits (111), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 49/88 (55%), Gaps = 7/88 (7%)
Query: 95 LKVKVVKGINLAIRDMM-SSDPYVVLRL---GQQTVQTTIVKSNLNPVWNEELMLSVP-Q 149
L V +++ L DM +SDPYV + L ++ +T + + LNPV+NE+ VP
Sbjct: 19 LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 78
Query: 150 EYG--PVKLEVFDHDTFSADDIMGEAEI 175
E G + + V+D D FS DI+GE ++
Sbjct: 79 ELGGKTLVMAVYDFDRFSKHDIIGEFKV 106
>pdb|3F04|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain
pdb|3F01|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Cu(Ii)
pdb|3F05|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Mn(Ii)
Length = 143
Score = 47.4 bits (111), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 49/88 (55%), Gaps = 7/88 (7%)
Query: 95 LKVKVVKGINLAIRDMM-SSDPYVVLRL---GQQTVQTTIVKSNLNPVWNEELMLSVP-Q 149
L V +++ L DM +SDPYV + L ++ +T + + LNPV+NE+ VP
Sbjct: 36 LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 95
Query: 150 EYG--PVKLEVFDHDTFSADDIMGEAEI 175
E G + + V+D D FS DI+GE ++
Sbjct: 96 ELGGKTLVMAVYDFDRFSKHDIIGEFKV 123
>pdb|3F00|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Cu(Ii)
Length = 143
Score = 47.4 bits (111), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 49/88 (55%), Gaps = 7/88 (7%)
Query: 95 LKVKVVKGINLAIRDMM-SSDPYVVLRL---GQQTVQTTIVKSNLNPVWNEELMLSVP-Q 149
L V +++ L DM +SDPYV + L ++ +T + + LNPV+NE+ VP
Sbjct: 36 LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 95
Query: 150 EYG--PVKLEVFDHDTFSADDIMGEAEI 175
E G + + V+D D FS DI+GE ++
Sbjct: 96 ELGGKTLVMAVYDFDRFSKHDIIGEFKV 123
>pdb|1RSY|A Chain A, Structure Of The First C2-domain Of Synaptotagmin I: A
Novel Ca2+(slash)phospholipid Binding Fold
Length = 152
Score = 47.0 bits (110), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 49/88 (55%), Gaps = 7/88 (7%)
Query: 95 LKVKVVKGINLAIRDMM-SSDPYVVLRL---GQQTVQTTIVKSNLNPVWNEELMLSVP-Q 149
L V +++ L DM +SDPYV + L ++ +T + + LNPV+NE+ VP
Sbjct: 44 LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 103
Query: 150 EYG--PVKLEVFDHDTFSADDIMGEAEI 175
E G + + V+D D FS DI+GE ++
Sbjct: 104 ELGGKTLVMAVYDFDRFSKHDIIGEFKV 131
>pdb|2R83|A Chain A, Crystal Structure Analysis Of Human Synaptotagmin 1
C2a-c2b
pdb|2R83|B Chain B, Crystal Structure Analysis Of Human Synaptotagmin 1
C2a-c2b
Length = 284
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 47/88 (53%), Gaps = 7/88 (7%)
Query: 95 LKVKVVKGINLAIRDMM-SSDPYVVLRL---GQQTVQTTIVKSNLNPVWNEELMLSVPQE 150
L V +++ L DM +SDPYV + L ++ +T + + LNPV+NE+ VP
Sbjct: 21 LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 80
Query: 151 YGPVK---LEVFDHDTFSADDIMGEAEI 175
K + V+D D FS DI+GE ++
Sbjct: 81 ELAGKTLVMAVYDFDRFSKHDIIGEFKV 108
Score = 31.6 bits (70), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 44/90 (48%), Gaps = 9/90 (10%)
Query: 93 GLLKVKVVKGINLAIRDMMS-SDPYVVLRLGQQ-----TVQTTIVKSNLNPVWNEELMLS 146
G L V +++ NL D+ SDPYV + L Q +TTI K+ LNP +NE
Sbjct: 150 GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFE 209
Query: 147 VPQEY---GPVKLEVFDHDTFSADDIMGEA 173
VP E V + V D+D +D +G+
Sbjct: 210 VPFEQIQKVQVVVTVLDYDKIGKNDAIGKV 239
>pdb|3FEH|A Chain A, Crystal Structure Of Full Length Centaurin Alpha-1
pdb|3LJU|X Chain X, Crystal Structure Of Full Length Centaurin Alpha-1 Bound
With The Head Group Of Pip3
Length = 386
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 28/45 (62%)
Query: 6 GNSSANAIYEAFIPEGVSKPGPDSSHEIRSKFIRSKYELQEFLKP 50
GN +A A +E+ +P +P P +R ++IR+KYE QEF+ P
Sbjct: 93 GNDAARARFESKVPSFYYRPTPSDCQLLREQWIRAKYERQEFIYP 137
>pdb|3FM8|C Chain C, Crystal Structure Of Full Length Centaurin Alpha-1 Bound
With The Fha Domain Of Kif13b (Capri Target)
pdb|3FM8|D Chain D, Crystal Structure Of Full Length Centaurin Alpha-1 Bound
With The Fha Domain Of Kif13b (Capri Target)
pdb|3MDB|C Chain C, Crystal Structure Of The Ternary Complex Of Full Length
Centaurin Alpha-1, Kif13b Fha Domain, And Ip4
pdb|3MDB|D Chain D, Crystal Structure Of The Ternary Complex Of Full Length
Centaurin Alpha-1, Kif13b Fha Domain, And Ip4
Length = 392
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 28/45 (62%)
Query: 6 GNSSANAIYEAFIPEGVSKPGPDSSHEIRSKFIRSKYELQEFLKP 50
GN +A A +E+ +P +P P +R ++IR+KYE QEF+ P
Sbjct: 95 GNDAARARFESKVPSFYYRPTPSDCQLLREQWIRAKYERQEFIYP 139
>pdb|1GMI|A Chain A, Structure Of The C2 Domain From Novel Protein Kinase C
Epsilon
Length = 136
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 48/107 (44%), Gaps = 14/107 (13%)
Query: 88 MVEFIGLLKVKVVKGINL-----AIRDMMSS-------DPYVVLRLGQQTVQTTIVKSNL 135
MV F GLLK+K+ + ++L ++RD + DPY+ L + + T K
Sbjct: 1 MVVFNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKT 60
Query: 136 N-PVWNEELMLSVPQEYGPVKLEVFDHDTFSADDIMGEAEIDIQPLL 181
N P W++E + V ++L VF DD + I + LL
Sbjct: 61 NSPAWHDEFVTDVCNGR-KIELAVFHDAPIGYDDFVANCTIQFEELL 106
>pdb|2IQJ|A Chain A, Crystal Structure Of The Gap Domain Of Smap1l (Loc64744)
Stromal Membrane-Associated Protein 1-Like
pdb|2IQJ|B Chain B, Crystal Structure Of The Gap Domain Of Smap1l (Loc64744)
Stromal Membrane-Associated Protein 1-Like
Length = 134
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
Query: 6 GNSSANAIYEAFIPEGVSKPGPDSSHEIRSKFIRSKYELQEFLKPSLRI 54
GN AN +YEA++PE +P D + E FIR KYE ++++ SL I
Sbjct: 87 GNGKANRLYEAYLPETFRRPQIDPAVE---GFIRDKYEKKKYMDRSLDI 132
>pdb|1RH8|A Chain A, Three-Dimensional Structure Of The Calcium-Free Piccolo
C2a- Domain
Length = 142
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 56/105 (53%), Gaps = 19/105 (18%)
Query: 92 IGLLKVKVVKGINLAIRDMMS-SDPYVVLRL----GQQTV----------QTTIVKSNLN 136
+G L + +++ NL RD SDP+V + L GQ V +T V+ +LN
Sbjct: 17 LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLN 76
Query: 137 PVWNEELML-SVPQEY---GPVKLEVFDHDTFSADDIMGEAEIDI 177
P WN+ ++ S+ E +++ V+D+D FS++D +GE ID+
Sbjct: 77 PEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDL 121
>pdb|2UZP|A Chain A, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma.
pdb|2UZP|B Chain B, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma.
pdb|2UZP|C Chain C, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma
Length = 144
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 43/82 (52%), Gaps = 11/82 (13%)
Query: 113 SDPYVVLRL-----GQQTVQTTIVKSNLNPVWNEELMLSVPQEYGPVK----LEVFDHDT 163
SDPYV L+L +T VK+ LNPVWNE + ++ + G V+ +EV+D D
Sbjct: 41 SDPYVKLKLIPDPRNLTKQKTRTVKATLNPVWNETFVFNL--KPGDVERRLSVEVWDWDR 98
Query: 164 FSADDIMGEAEIDIQPLLTSAL 185
S +D MG + LL + +
Sbjct: 99 TSRNDFMGAMSFGVSELLKAPV 120
>pdb|3NSJ|A Chain A, The X-Ray Crystal Structure Of Lymphocyte Perforin
Length = 540
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 64/145 (44%), Gaps = 16/145 (11%)
Query: 35 SKFIRSKYELQEFLKPSLRIASGKPSASLQSSFSRKIIDSFRSTNSSQKKDVGMVEFIGL 94
S +I S+ Q +P SG+ +S S + DS + + G+ +
Sbjct: 344 SHYIMSRARWQNCSRP---CRSGQHKSS-HDSCQCECQDSKVTNQDCCPRQRGLAHLV-- 397
Query: 95 LKVKVVKGINLAIRDMMSSDPYVVLRLGQQTVQTTIVKSNLNPVWN-----EELMLSVPQ 149
V + +L ++D Y+ + G Q +T +V +N NP W E ++LS
Sbjct: 398 --VSNFRAEHLWGDYTTATDAYLKVFFGGQEFRTGVVWNNNNPRWTDKMDFENVLLSTG- 454
Query: 150 EYGPVKLEVFDHDTFSADDIMGEAE 174
GP++++V+D D DD++G +
Sbjct: 455 --GPLRVQVWDADYGWDDDLLGSCD 477
>pdb|2CHD|A Chain A, Crystal Structure Of The C2a Domain Of Rabphilin-3a
Length = 142
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 53/121 (43%), Gaps = 17/121 (14%)
Query: 77 STNSSQKKDVGMVEFIGL-------LKVKVVKGINLAIRDMMS-SDPYVVLRL-----GQ 123
S +S Q +G +EF L L+ +++ L D +DPYV L L
Sbjct: 6 SYDSDQATTLGALEFSLLYDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKS 65
Query: 124 QTVQTTIVKSNLNPVWNEELMLSVPQE----YGPVKLEVFDHDTFSADDIMGEAEIDIQP 179
++T +++ NPVWNE L E +++ V D D F ++ +GE ++
Sbjct: 66 NKLRTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKK 125
Query: 180 L 180
L
Sbjct: 126 L 126
>pdb|3PFQ|A Chain A, Crystal Structure And Allosteric Activation Of Protein
Kinase C Beta Ii
Length = 674
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 7/80 (8%)
Query: 113 SDPYVVLRL-----GQQTVQTTIVKSNLNPVWNEELMLSVPQEYGPVKL--EVFDHDTFS 165
SDPYV L+L + +T +KS+LNP WNE + + +L E++D D S
Sbjct: 193 SDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLTS 252
Query: 166 ADDIMGEAEIDIQPLLTSAL 185
+D MG I L + +
Sbjct: 253 RNDFMGSLSFGISELQKAGV 272
>pdb|1A25|A Chain A, C2 Domain From Protein Kinase C (Beta)
pdb|1A25|B Chain B, C2 Domain From Protein Kinase C (Beta)
Length = 149
Score = 40.4 bits (93), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 7/75 (9%)
Query: 113 SDPYVVLRL-----GQQTVQTTIVKSNLNPVWNEELMLSVPQEYGPVKL--EVFDHDTFS 165
SDPYV L+L + +T +K +LNP WNE + + +L E++D D S
Sbjct: 52 SDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLTS 111
Query: 166 ADDIMGEAEIDIQPL 180
+D MG I L
Sbjct: 112 RNDFMGSLSFGISEL 126
>pdb|2K3H|A Chain A, Structural Determinants For Ca2+ And Pip2 Binding By The
C2a Domain Of Rabphilin-3a
Length = 140
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 53/121 (43%), Gaps = 17/121 (14%)
Query: 77 STNSSQKKDVGMVEFIGL-------LKVKVVKGINLAIRDMMS-SDPYVVLRL-----GQ 123
S +S + +G +EF L L+ +++ L D +DPYV L L
Sbjct: 4 SYDSDEATTLGALEFSLLYDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKS 63
Query: 124 QTVQTTIVKSNLNPVWNEELMLSVPQE----YGPVKLEVFDHDTFSADDIMGEAEIDIQP 179
++T +++ NPVWNE L E +++ V D D F ++ +GE ++
Sbjct: 64 NKLRTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKK 123
Query: 180 L 180
L
Sbjct: 124 L 124
>pdb|1UGK|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin
Iv From Human Fetal Brain (Kiaa1342)
Length = 138
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 55/113 (48%), Gaps = 14/113 (12%)
Query: 94 LLKVKVVKGINLAIRDMMSSDPYV---VLRLGQQTVQTTIVKSNLNPVWNEELML-SVP- 148
++ +K +G+ M+SDPY+ +L + V+T +++ L+P ++E +P
Sbjct: 25 VVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPY 84
Query: 149 ---QEYGPVKLEVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQI 198
QE + + D FS DDI+GE I PL S + + +M N +I
Sbjct: 85 TQIQELA-LHFTILSFDRFSRDDIIGEVLI---PL--SGIELSEGKMLMNREI 131
>pdb|1DSY|A Chain A, C2 Domain From Protein Kinase C (Alpha) Complexed With
Ca2+ And Phosphatidylserine
Length = 139
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 7/76 (9%)
Query: 113 SDPYVVLRL-----GQQTVQTTIVKSNLNPVWNEELMLSVPQEYGPVKL--EVFDHDTFS 165
SDPYV L+L + +T ++S LNP WNE + +L E++D D +
Sbjct: 38 SDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLKPSDKDRRLSVEIWDWDRTT 97
Query: 166 ADDIMGEAEIDIQPLL 181
+D MG + L+
Sbjct: 98 RNDFMGSLSFGVSELM 113
>pdb|3GPE|A Chain A, Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain
Complexed With Ca2+ And Ptdins(4,5)p2
pdb|3RDJ|A Chain A, Rat Pkc C2 Domain Apo
pdb|3TWY|A Chain A, Rat Pkc C2 Domain Bound To Pb
Length = 137
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 7/76 (9%)
Query: 113 SDPYVVLRL-----GQQTVQTTIVKSNLNPVWNEELMLSVPQEYGPVKL--EVFDHDTFS 165
SDPYV L+L + +T ++S LNP WNE + +L E++D D +
Sbjct: 37 SDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLKPSDKDRRLSVEIWDWDRTT 96
Query: 166 ADDIMGEAEIDIQPLL 181
+D MG + L+
Sbjct: 97 RNDFMGSLSFGVSELM 112
>pdb|2CM5|A Chain A, Crystal Structure Of The C2b Domain Of Rabphilin
Length = 166
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 47/94 (50%), Gaps = 9/94 (9%)
Query: 93 GLLKVKVVKGINLAIRDMMS-SDPYVVLRL----GQQTVQTT-IVKSNLNPVWNEELMLS 146
G L V +++ ++LA D SDP+V L L G++ T I K LNP +NEE
Sbjct: 37 GGLIVGIIRCVHLAAXDANGYSDPFVKLWLKPDXGKKAKHKTQIKKKTLNPEFNEEFFYD 96
Query: 147 VPQE---YGPVKLEVFDHDTFSADDIMGEAEIDI 177
+ + + V+D+D ++D +G ++ I
Sbjct: 97 IKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGI 130
>pdb|3FDW|A Chain A, Crystal Structure Of A C2 Domain From Human Synaptotagmin-
Like Protein 4
pdb|3FDW|B Chain B, Crystal Structure Of A C2 Domain From Human Synaptotagmin-
Like Protein 4
Length = 148
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 8/92 (8%)
Query: 94 LLKVKVVKGINLAIRDMMSSDPYVVLRL-----GQQTVQTTIVKSNLNPVWNEELMLSVP 148
++ VK + A S+PYV L Q +T+I + +NP+++E L +P
Sbjct: 26 VVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLRYEIP 85
Query: 149 QEY---GPVKLEVFDHDTFSADDIMGEAEIDI 177
+ ++ V+ H F + +GEAEI +
Sbjct: 86 ESLLAQRTLQFSVWHHGRFGRNTFLGEAEIQM 117
>pdb|3RPB|A Chain A, The C2b-Domain Of Rabphilin: Structural Variations In A
Janus-Faced Domain
Length = 140
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 47/94 (50%), Gaps = 9/94 (9%)
Query: 93 GLLKVKVVKGINLAIRDMMS-SDPYVVLRL----GQQTVQTT-IVKSNLNPVWNEELMLS 146
G L V +++ ++LA D SDP+V L L G++ T I K LNP +NEE
Sbjct: 15 GGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYD 74
Query: 147 VPQE---YGPVKLEVFDHDTFSADDIMGEAEIDI 177
+ + + V+D+D ++D +G ++ I
Sbjct: 75 IKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGI 108
>pdb|2CM6|A Chain A, Crystal Structure Of The C2b Domain Of Rabphilin3a
pdb|2CM6|B Chain B, Crystal Structure Of The C2b Domain Of Rabphilin3a
Length = 166
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 47/94 (50%), Gaps = 9/94 (9%)
Query: 93 GLLKVKVVKGINLAIRDMMS-SDPYVVLRL----GQQTVQTT-IVKSNLNPVWNEELMLS 146
G L V +++ ++LA D SDP+V L L G++ T I K LNP +NEE
Sbjct: 37 GGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYD 96
Query: 147 VPQE---YGPVKLEVFDHDTFSADDIMGEAEIDI 177
+ + + V+D+D ++D +G ++ I
Sbjct: 97 IKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGI 130
>pdb|3N5A|A Chain A, Synaptotagmin-7, C2b-Domain, Calcium Bound
Length = 138
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 9/85 (10%)
Query: 97 VKVVKGINLAIRDMM-SSDPYVVLRLGQQ-----TVQTTIVKSNLNPVWNEELMLSVPQE 150
V ++K NL D+ +SDPYV + L + +T K NLNP++NE +P E
Sbjct: 20 VNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFDIPTE 79
Query: 151 Y---GPVKLEVFDHDTFSADDIMGE 172
+ + V D D S +D++G+
Sbjct: 80 KLRETTIIITVMDKDKLSRNDVIGK 104
>pdb|4DNL|A Chain A, Crystal Structure Of A C2 Domain Of A Protein Kinase C
Alpha (Prkca) From Homo Sapiens At 1.90 A Resolution
Length = 140
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 38/85 (44%), Gaps = 8/85 (9%)
Query: 95 LKVKVVKGINLAIRDMMS-SDPYVVLRL-----GQQTVQTTIVKSNLNPVWNEELMLSVP 148
L V V NL D SDPYV L+L + +T ++S LNP WNE +
Sbjct: 20 LHVTVRDAKNLIPXDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLK 79
Query: 149 QEYGPVKL--EVFDHDTFSADDIMG 171
+L E++D D + +D G
Sbjct: 80 PSDKDRRLSVEIWDWDRTTRNDFXG 104
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
pdb|4F1P|B Chain B, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
Length = 368
Score = 33.9 bits (76), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Query: 1 MIEVGGNSSANAIYEAFIPE-GVSKPGPDSSHEIRSKFIRSKYELQEFL 48
M E+G N N IYEA + V KPGP S + + +I +KY ++FL
Sbjct: 101 MCELG-NVIINQIYEARVEAMAVKKPGPSCSRQEKEAWIHAKYVEKKFL 148
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
pdb|3JUE|B Chain B, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
Length = 368
Score = 33.5 bits (75), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Query: 1 MIEVGGNSSANAIYEAFIPE-GVSKPGPDSSHEIRSKFIRSKYELQEFL 48
M E+G N N IYEA + V KPGP S + + +I +KY ++FL
Sbjct: 101 MCELG-NVIINQIYEARVEAMAVKKPGPSCSRQEKEAWIHAKYVEKKFL 148
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
pdb|3T9K|B Chain B, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
Length = 390
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Query: 1 MIEVGGNSSANAIYEAFIPE-GVSKPGPDSSHEIRSKFIRSKYELQEFL 48
M E+G N N IYEA + V KPGP S + + +I +KY ++FL
Sbjct: 101 MCELG-NVIINQIYEARVEAMAVKKPGPSCSRQEKEAWIHAKYVEKKFL 148
>pdb|2DMH|A Chain A, Solution Structure Of The First C2 Domain Of Human
Myoferlin
Length = 140
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 4/92 (4%)
Query: 93 GLLKVKVVKGINLAIRDMMSSDPYVVLRLGQQTVQTTIVKSNLNPVWNEEL---MLSVPQ 149
G+L+V V N+ DP V + + +T V + LNPVWNE L + +P
Sbjct: 7 GMLRVIVESASNIPKTKFGKPDPIVSVIFKDEKKKTKKVDNELNPVWNEILEFDLRGIPL 66
Query: 150 EY-GPVKLEVFDHDTFSADDIMGEAEIDIQPL 180
++ + + V D +T + ++G A + ++ L
Sbjct: 67 DFSSSLGIIVKDFETIGQNKLIGTATVALKDL 98
>pdb|2NQ3|A Chain A, Crystal Structure Of The C2 Domain Of Human Itchy Homolog
E3 Ubiquitin Protein Ligase
Length = 173
Score = 32.7 bits (73), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Query: 108 RDMMSSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDTFSAD 167
++ PYV + + Q+ +T + +P W + L + V + V+ H T +D
Sbjct: 52 KNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVT-PVSKLHFRVWSHQTLKSD 110
Query: 168 DIMGEAEIDIQPLLTS 183
++G A +DI L S
Sbjct: 111 VLLGTAALDIYETLKS 126
>pdb|3PYC|A Chain A, Crystal Structure Of Human Smurf1 C2 Domain
Length = 132
Score = 32.0 bits (71), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 57/123 (46%), Gaps = 7/123 (5%)
Query: 90 EFIGLLKVKVVKGINLAIRDMMS-SDPY--VVLRLGQQTVQTTIVKSNLNPVWNEELMLS 146
EFI + ++ V+ NLA +D DP+ +V+ Q T VK+ L+P WN+ L
Sbjct: 3 EFIKI-RLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLY 61
Query: 147 VPQEYGPVKLEVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDD 206
V + + + V++H G + LL++A++ + + + K SD
Sbjct: 62 VGKT-DSITISVWNHKKIHKK--QGAGFLGCVRLLSNAISRLKDTGYQRLDLCKLNPSDT 118
Query: 207 NAL 209
+A+
Sbjct: 119 DAV 121
>pdb|1RLW|A Chain A, Calcium-Phospholipid Binding Domain From Cytosolic
Phospholipase A2
Length = 126
Score = 31.6 bits (70), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 11/95 (11%)
Query: 92 IGLLKVKVVKGINLAIRDMMSS-DPYVVLRLGQ---QTVQTTIVKSNLNPVWNE--ELML 145
+ L KV KG A DM+ + DPYV L + +T +++NPVWNE E +L
Sbjct: 8 VVLRATKVTKG---AFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFIL 64
Query: 146 SVPQEYGPVKLEVFDHDTFSADDIMGEAEIDIQPL 180
P + +++ + D + + D+ +G A + +
Sbjct: 65 D-PNQENVLEITLMDAN-YVMDETLGTATFTVSSM 97
>pdb|1CJY|A Chain A, Human Cytosolic Phospholipase A2
pdb|1CJY|B Chain B, Human Cytosolic Phospholipase A2
Length = 749
Score = 31.6 bits (70), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 11/92 (11%)
Query: 92 IGLLKVKVVKGINLAIRDMMSS-DPYVVLRLGQ---QTVQTTIVKSNLNPVWNE--ELML 145
+ L KV KG A DM+ + DPYV L + +T +++NPVWNE E +L
Sbjct: 23 VVLRATKVTKG---AFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFIL 79
Query: 146 SVPQEYGPVKLEVFDHDTFSADDIMGEAEIDI 177
P + +++ + D + + D+ +G A +
Sbjct: 80 D-PNQENVLEITLMDAN-YVMDETLGTATFTV 109
>pdb|1K5W|A Chain A, Three-Dimensional Structure Of The Synaptotagmin 1 C2b-
Domain: Synaptotagmin 1 As A Phospholipid Binding
Machine
Length = 152
Score = 31.2 bits (69), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 44/90 (48%), Gaps = 9/90 (10%)
Query: 93 GLLKVKVVKGINLAIRDMMS-SDPYVVLRLGQQ-----TVQTTIVKSNLNPVWNEELMLS 146
G L V +++ NL D+ SDPYV + L Q +TTI K+ LNP +NE
Sbjct: 18 GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFE 77
Query: 147 VPQEY---GPVKLEVFDHDTFSADDIMGEA 173
VP E V + V D+D +D +G+
Sbjct: 78 VPFEQIQKVQVVVTVLDYDKIGKNDAIGKV 107
>pdb|4AQ7|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And Leucyl-Adenylate Analogue In The
Aminoacylation Conformation
pdb|4AQ7|D Chain D, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And Leucyl-Adenylate Analogue In The
Aminoacylation Conformation
pdb|4ARC|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And Leucine In The Editing Conformation
pdb|4ARI|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And The Benzoxaborole An2679 In The Editing
Conformation
pdb|4AS1|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And The Benzoxaborole An2679 In The Editing
Conformation
pdb|3ZGZ|A Chain A, Ternary Complex Of E. Coli Leucyl-trna Synthetase,
Trna(leu) And Toxic Moiety From Agrocin 84 (tm84) In
Aminoacylation- Like Conformation
pdb|3ZGZ|D Chain D, Ternary Complex Of E. Coli Leucyl-trna Synthetase,
Trna(leu) And Toxic Moiety From Agrocin 84 (tm84) In
Aminoacylation- Like Conformation
Length = 880
Score = 31.2 bits (69), Expect = 0.57, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
Query: 194 GNMQIGKWLKSDDNALLEDSTINI--IDGKVKQKISLKLQNVE 234
G++ W +D+ A++EDST+ + ++GKV+ KI++ + E
Sbjct: 800 GDIDNAPWPVADEKAMVEDSTLVVVQVNGKVRAKITVPVDATE 842
>pdb|2LHA|A Chain A, Solution Structure Of C2b With Ip6
Length = 151
Score = 31.2 bits (69), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 44/90 (48%), Gaps = 9/90 (10%)
Query: 93 GLLKVKVVKGINLAIRDMMS-SDPYVVLRLGQQ-----TVQTTIVKSNLNPVWNEELMLS 146
G L V +++ NL D+ SDPYV + L Q +TTI K+ LNP +NE
Sbjct: 17 GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFE 76
Query: 147 VPQEY---GPVKLEVFDHDTFSADDIMGEA 173
VP E V + V D+D +D +G+
Sbjct: 77 VPFEQIQKVQVVVTVLDYDKIGKNDAIGKV 106
>pdb|1TJM|A Chain A, Crystallographic Identification Of Sr2+ Coordination Site
In Synaptotagmin I C2b Domain
pdb|1UOV|A Chain A, Calcium Binding Domain C2b
pdb|1UOW|A Chain A, Calcium Binding Domain C2b
pdb|1TJX|A Chain A, Crystallographic Identification Of Ca2+ Coordination Sites
In Synaptotagmin I C2b Domain
Length = 159
Score = 31.2 bits (69), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 44/89 (49%), Gaps = 9/89 (10%)
Query: 93 GLLKVKVVKGINLAIRDMMS-SDPYVVLRLGQQ-----TVQTTIVKSNLNPVWNEELMLS 146
G L V +++ NL D+ SDPYV + L Q +TTI K+ LNP +NE
Sbjct: 25 GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFE 84
Query: 147 VPQEY---GPVKLEVFDHDTFSADDIMGE 172
VP E V + V D+D +D +G+
Sbjct: 85 VPFEQIQKVQVVVTVLDYDKIGKNDAIGK 113
>pdb|1BCI|A Chain A, C2 Domain Of Cytosolic Phospholipase A2, Nmr, Minimized
Average Structure
Length = 138
Score = 30.4 bits (67), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 11/95 (11%)
Query: 92 IGLLKVKVVKGINLAIRDMMSS-DPYVVLRLGQQ---TVQTTIVKSNLNPVWNE--ELML 145
+ L KV KG A DM+ + DPYV L + +T +++NPVWNE E +L
Sbjct: 23 VVLRATKVTKG---AFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFIL 79
Query: 146 SVPQEYGPVKLEVFDHDTFSADDIMGEAEIDIQPL 180
P + +++ + D + + D+ +G A + +
Sbjct: 80 D-PNQENVLEITLMDAN-YVMDETLGTATFTVSSM 112
>pdb|2X8Y|A Chain A, Crystal Structure Of Ance
pdb|2X8Z|A Chain A, Crystal Structure Of Ance-Captopril Complex
pdb|2X90|A Chain A, Crystal Structure Of Ance-Enalaprilat Complex
pdb|2X91|A Chain A, Crystal Structure Of Ance-Lisinopril Complex
pdb|2X96|A Chain A, Crystal Structure Of Ance-Rxpa380 Complex
pdb|2X97|A Chain A, Crystal Structure Of Ance-Rxp407 Complex
pdb|2XHM|A Chain A, Crystal Structure Of Ance-K26 Complex
pdb|3ZQZ|A Chain A, Crystal Structure Of Ance In Complex With A Selenium
Analogue Of Captopril
pdb|4AA1|A Chain A, Crystal Structure Of Ance In Complex With Angiotensin-Ii
pdb|4AA2|A Chain A, Crystal Structure Of Ance In Complex With Bradykinin
Potentiating Peptide B
pdb|4ASQ|A Chain A, Crystal Structure Of Ance In Complex With Bradykinin
pdb|4ASR|A Chain A, Crystal Structure Of Ance In Complex With Thr6-Bradykinin
Length = 598
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 2 IEVGGNSSANAIYEAFIPEGVSKPGPDSSHEIRSKFIRSKYELQEFLKPSLRI 54
++ G+++A A + + G SKP PD+ + I S + E+ +P LR+
Sbjct: 524 CDIYGSAAAGAAFHNMLSMGASKPWPDALEAFNGERIMSGKAIAEYFEP-LRV 575
>pdb|2X92|A Chain A, Crystal Structure Of Ance-Ramiprilat Complex
pdb|2X93|A Chain A, Crystal Structure Of Ance-Trandolaprilat Complex
pdb|2X94|A Chain A, Crystal Structure Of Ance-Perindoprilat Complex
pdb|2X95|A Chain A, Crystal Structure Of Ance-Lisinopril-Tryptophan Analogue,
Lisw-S Complex
Length = 599
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 2 IEVGGNSSANAIYEAFIPEGVSKPGPDSSHEIRSKFIRSKYELQEFLKPSLRI 54
++ G+++A A + + G SKP PD+ + I S + E+ +P LR+
Sbjct: 524 CDIYGSAAAGAAFHNMLSMGASKPWPDALEAFNGERIMSGKAIAEYFEP-LRV 575
>pdb|1J36|A Chain A, Crystal Structure Of Drosophila Ance
pdb|1J36|B Chain B, Crystal Structure Of Drosophila Ance
pdb|1J37|A Chain A, Crystal Structure Of Drosophila Ance
pdb|1J37|B Chain B, Crystal Structure Of Drosophila Ance
pdb|1J38|A Chain A, Crystal Structure Of Drosophila Ance
pdb|1J38|B Chain B, Crystal Structure Of Drosophila Ance
Length = 607
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 2 IEVGGNSSANAIYEAFIPEGVSKPGPDSSHEIRSKFIRSKYELQEFLKPSLRI 54
++ G++ A A + + G SKP PD+ + I S + E+ +P LR+
Sbjct: 527 CDIYGSARAGAAFHNMLSMGASKPWPDALEAFNGERIMSGKAIAEYFEP-LRV 578
>pdb|4FYE|A Chain A, Crystal Structure Of A Legionella Phosphoinositide
Phosphatase, Sidf
pdb|4FYF|A Chain A, Structural Basis For Substrate Recognition By A Novel
Legionella Phosphoinositide Phosphatase
pdb|4FYG|A Chain A, Structural Basis For Substrate Recognition By A Novel
Legionella Phosphoinositide Phosphatase
Length = 761
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 6/61 (9%)
Query: 102 GINLAIRDMMSSDPY------VVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQEYGPVK 155
G + D +D Y V + Q+ V T+ + ++ + NE+L +P+EY P +
Sbjct: 271 GARMPYSDFKGADDYKKLAIKAVTLINQEEVIQTLAQRQIDRMTNEDLWNKIPEEYRPDE 330
Query: 156 L 156
L
Sbjct: 331 L 331
>pdb|2CRR|A Chain A, Solution Structure Of Arfgap Domain From Human Smap1
Length = 141
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Query: 6 GNSSANAIYEAFIPEGVSKPGPDSSHEIRSKFIR 39
GN+ A +YEA +PE +P D + E FIR
Sbjct: 89 GNTKARLLYEANLPENFRRPQTDQAVEF---FIR 119
>pdb|4DJ4|A Chain A, X-ray Structure Of Mutant N211d Of Bifunctional Nuclease
Tbn1 From Solanum Lycopersicum (tomato)
pdb|4DJ4|B Chain B, X-ray Structure Of Mutant N211d Of Bifunctional Nuclease
Tbn1 From Solanum Lycopersicum (tomato)
Length = 277
Score = 27.7 bits (60), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 20/31 (64%)
Query: 132 KSNLNPVWNEELMLSVPQEYGPVKLEVFDHD 162
KSNL+ VW+ E++L+ ++Y + + + D
Sbjct: 152 KSNLHHVWDREIILTAAKDYYAKDINLLEED 182
>pdb|3SNG|A Chain A, X-ray Structure Of Fully Glycosylated Bifunctional
Nuclease Tbn1 From Solanum Lycopersicum (tomato)
Length = 277
Score = 27.7 bits (60), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 20/31 (64%)
Query: 132 KSNLNPVWNEELMLSVPQEYGPVKLEVFDHD 162
KSNL+ VW+ E++L+ ++Y + + + D
Sbjct: 152 KSNLHHVWDREIILTAAKDYYAKDINLLEED 182
>pdb|2EYQ|A Chain A, Crystal Structure Of Escherichia Coli Transcription-Repair
Coupling Factor
pdb|2EYQ|B Chain B, Crystal Structure Of Escherichia Coli Transcription-Repair
Coupling Factor
Length = 1151
Score = 26.9 bits (58), Expect = 9.7, Method: Composition-based stats.
Identities = 29/125 (23%), Positives = 54/125 (43%), Gaps = 22/125 (17%)
Query: 46 EFLKPSLRIASGKPSASLQSSFSRKIIDSFRSTNSSQKKDVGMVEFIGLLKVKVVKGINL 105
E PSL P + + SF ++I S ++ N ++ V +++ GLL +++
Sbjct: 1008 ELRMPSLLPDDFIPDVNTRLSFYKRIA-SAKTENELEEIKVELIDRFGLLPDPARTLLDI 1066
Query: 106 A----------IRDMMSSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQEY---G 152
A IR + ++ V+ + K+++NP W L+ PQ Y G
Sbjct: 1067 ARLRQQAQKLGIRKLEGNEKGGVIEFAE--------KNHVNPAWLIGLLQKQPQHYRLDG 1118
Query: 153 PVKLE 157
P +L+
Sbjct: 1119 PTRLK 1123
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.133 0.368
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,154,761
Number of Sequences: 62578
Number of extensions: 276188
Number of successful extensions: 538
Number of sequences better than 100.0: 59
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 490
Number of HSP's gapped (non-prelim): 62
length of query: 249
length of database: 14,973,337
effective HSP length: 96
effective length of query: 153
effective length of database: 8,965,849
effective search space: 1371774897
effective search space used: 1371774897
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 50 (23.9 bits)