Query 025708
Match_columns 249
No_of_seqs 362 out of 2199
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 08:41:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025708.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025708hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1030 Predicted Ca2+-depende 100.0 2E-32 4.3E-37 208.9 14.9 161 89-249 2-164 (168)
2 cd04038 C2_ArfGAP C2 domain pr 100.0 1.4E-29 3.1E-34 194.6 19.0 144 93-236 2-145 (145)
3 cd04016 C2_Tollip C2 domain pr 99.9 1.3E-24 2.7E-29 162.0 14.8 118 93-244 2-121 (121)
4 cd08682 C2_Rab11-FIP_classI C2 99.9 1.2E-22 2.5E-27 153.2 13.8 102 95-206 1-109 (126)
5 cd04042 C2A_MCTP_PRT C2 domain 99.9 8.8E-22 1.9E-26 147.4 15.3 119 94-246 1-121 (121)
6 cd08376 C2B_MCTP_PRT C2 domain 99.9 9.7E-22 2.1E-26 146.0 15.4 113 94-245 1-115 (116)
7 cd08375 C2_Intersectin C2 doma 99.9 9.9E-22 2.2E-26 149.9 15.4 123 89-244 11-135 (136)
8 cd08391 C2A_C2C_Synaptotagmin_ 99.9 5.1E-22 1.1E-26 148.4 13.6 113 93-244 1-121 (121)
9 cd08681 C2_fungal_Inn1p-like C 99.9 3E-22 6.4E-27 149.2 12.2 115 93-244 1-118 (118)
10 cd04024 C2A_Synaptotagmin-like 99.9 2.3E-21 4.9E-26 146.4 14.1 124 93-244 1-128 (128)
11 cd08677 C2A_Synaptotagmin-13 C 99.9 6.7E-22 1.5E-26 145.5 10.7 95 84-180 5-106 (118)
12 cd04019 C2C_MCTP_PRT_plant C2 99.9 3E-21 6.6E-26 149.4 14.9 106 94-207 1-109 (150)
13 cd08379 C2D_MCTP_PRT_plant C2 99.9 3.4E-21 7.4E-26 144.5 14.3 101 94-206 1-111 (126)
14 cd04022 C2A_MCTP_PRT_plant C2 99.9 4.4E-21 9.5E-26 144.8 13.8 120 94-245 1-126 (127)
15 cd08678 C2_C21orf25-like C2 do 99.9 8.3E-21 1.8E-25 143.1 14.7 120 95-247 1-122 (126)
16 cd04036 C2_cPLA2 C2 domain pre 99.9 7E-21 1.5E-25 142.0 14.0 111 95-244 2-117 (119)
17 cd04044 C2A_Tricalbin-like C2 99.9 5.5E-21 1.2E-25 143.4 13.2 120 92-246 1-124 (124)
18 cd08401 C2A_RasA2_RasA3 C2 dom 99.9 9.4E-21 2E-25 141.7 14.3 99 95-205 2-103 (121)
19 cd08378 C2B_MCTP_PRT_plant C2 99.9 7.2E-21 1.6E-25 142.3 12.4 117 95-244 2-119 (121)
20 cd08395 C2C_Munc13 C2 domain t 99.9 1.1E-20 2.3E-25 140.6 13.2 102 94-207 1-113 (120)
21 cd08377 C2C_MCTP_PRT C2 domain 99.9 2.2E-20 4.8E-25 139.2 14.5 89 93-181 1-90 (119)
22 cd04029 C2A_SLP-4_5 C2 domain 99.9 6.1E-21 1.3E-25 143.5 11.4 108 85-204 7-124 (125)
23 cd08381 C2B_PI3K_class_II C2 d 99.9 5.7E-21 1.2E-25 143.1 11.1 101 92-204 12-121 (122)
24 cd04025 C2B_RasA1_RasA4 C2 dom 99.8 3.3E-20 7.1E-25 139.2 14.4 101 94-206 1-103 (123)
25 cd04033 C2_NEDD4_NEDD4L C2 dom 99.8 2E-20 4.4E-25 142.2 13.2 125 94-245 1-133 (133)
26 cd04039 C2_PSD C2 domain prese 99.8 2.8E-20 6.1E-25 136.3 12.7 94 93-186 1-101 (108)
27 cd08407 C2B_Synaptotagmin-13 C 99.8 7.8E-21 1.7E-25 144.8 9.0 120 84-203 6-136 (138)
28 cd08400 C2_Ras_p21A1 C2 domain 99.8 1.4E-19 3.1E-24 136.3 15.6 120 92-246 3-124 (126)
29 cd04028 C2B_RIM1alpha C2 domai 99.8 4.2E-20 9.1E-25 141.8 12.8 105 91-207 27-139 (146)
30 cd04014 C2_PKC_epsilon C2 doma 99.8 1.4E-19 2.9E-24 137.5 15.6 117 91-246 2-130 (132)
31 cd08393 C2A_SLP-1_2 C2 domain 99.8 2E-20 4.3E-25 140.8 10.3 108 85-204 7-124 (125)
32 cd08392 C2A_SLP-3 C2 domain fi 99.8 3E-20 6.4E-25 140.2 11.1 111 85-204 7-127 (128)
33 cd04015 C2_plant_PLD C2 domain 99.8 2E-19 4.3E-24 140.6 16.0 122 91-245 5-158 (158)
34 cd04054 C2A_Rasal1_RasA4 C2 do 99.8 1.7E-19 3.7E-24 134.9 14.5 100 95-205 2-103 (121)
35 cd04010 C2B_RasA3 C2 domain se 99.8 5E-20 1.1E-24 142.0 11.8 103 94-208 1-124 (148)
36 cd08688 C2_KIAA0528-like C2 do 99.8 6.4E-20 1.4E-24 135.0 11.8 103 95-206 1-109 (110)
37 cd08680 C2_Kibra C2 domain fou 99.8 5.3E-20 1.1E-24 137.9 10.6 96 85-180 6-111 (124)
38 cd08387 C2A_Synaptotagmin-8 C2 99.8 9.5E-20 2.1E-24 136.9 12.0 108 85-204 8-122 (124)
39 cd08692 C2B_Tac2-N C2 domain s 99.8 3.8E-20 8.3E-25 139.4 9.7 120 84-203 5-134 (135)
40 cd08406 C2B_Synaptotagmin-12 C 99.8 3.2E-20 7E-25 141.3 9.4 120 84-203 6-134 (136)
41 cd08373 C2A_Ferlin C2 domain f 99.8 3.8E-19 8.2E-24 134.2 14.8 115 99-248 2-119 (127)
42 cd04017 C2D_Ferlin C2 domain f 99.8 4.5E-19 9.8E-24 135.2 15.0 121 94-247 2-134 (135)
43 cd04050 C2B_Synaptotagmin-like 99.8 2.2E-19 4.7E-24 131.1 12.5 100 94-206 1-102 (105)
44 cd08388 C2A_Synaptotagmin-4-11 99.8 2.3E-19 4.9E-24 135.6 13.0 110 85-204 8-126 (128)
45 cd08394 C2A_Munc13 C2 domain f 99.8 4.7E-19 1E-23 131.7 13.8 101 93-207 2-102 (127)
46 cd04046 C2_Calpain C2 domain p 99.8 6E-19 1.3E-23 132.9 14.5 88 92-180 2-90 (126)
47 cd08685 C2_RGS-like C2 domain 99.8 1.7E-19 3.6E-24 134.5 11.2 101 91-203 10-118 (119)
48 cd08385 C2A_Synaptotagmin-1-5- 99.8 1.9E-19 4.2E-24 135.2 11.5 108 85-204 8-122 (124)
49 cd04018 C2C_Ferlin C2 domain t 99.8 2.3E-19 5E-24 138.7 11.5 90 94-183 1-107 (151)
50 cd04043 C2_Munc13_fungal C2 do 99.8 1.8E-18 4E-23 130.2 15.3 88 94-181 2-94 (126)
51 cd04027 C2B_Munc13 C2 domain s 99.8 8.1E-19 1.8E-23 132.4 13.1 100 93-206 1-112 (127)
52 cd04011 C2B_Ferlin C2 domain s 99.8 5.6E-19 1.2E-23 130.2 11.9 102 93-206 4-110 (111)
53 cd04030 C2C_KIAA1228 C2 domain 99.8 4.7E-19 1E-23 133.6 11.7 108 85-204 8-126 (127)
54 cd04031 C2A_RIM1alpha C2 domai 99.8 4.5E-19 9.7E-24 133.3 10.7 96 85-180 8-113 (125)
55 cd08382 C2_Smurf-like C2 domai 99.8 1.9E-18 4.2E-23 129.6 14.0 88 95-183 2-93 (123)
56 cd08521 C2A_SLP C2 domain firs 99.8 6E-19 1.3E-23 132.2 11.1 108 85-204 6-123 (123)
57 cd08408 C2B_Synaptotagmin-14_1 99.8 3.5E-19 7.5E-24 136.1 9.8 120 84-203 6-136 (138)
58 cd04013 C2_SynGAP_like C2 doma 99.8 3.5E-18 7.6E-23 130.9 15.2 130 90-248 8-142 (146)
59 cd08402 C2B_Synaptotagmin-1 C2 99.8 3.8E-19 8.3E-24 135.7 9.9 119 85-203 7-134 (136)
60 cd08386 C2A_Synaptotagmin-7 C2 99.8 1.1E-18 2.5E-23 131.1 12.2 108 85-204 8-123 (125)
61 cd08389 C2A_Synaptotagmin-14_1 99.8 8.1E-19 1.8E-23 131.8 11.2 107 85-204 8-122 (124)
62 cd04041 C2A_fungal C2 domain f 99.8 1E-18 2.3E-23 128.7 11.5 90 93-182 1-99 (111)
63 cd08404 C2B_Synaptotagmin-4 C2 99.8 4.8E-19 1E-23 135.2 9.7 119 85-203 7-134 (136)
64 cd04049 C2_putative_Elicitor-r 99.8 3E-18 6.6E-23 128.7 13.6 102 93-206 1-108 (124)
65 cd08384 C2B_Rabphilin_Doc2 C2 99.8 4.7E-19 1E-23 134.7 9.0 95 85-179 5-108 (133)
66 cd08390 C2A_Synaptotagmin-15-1 99.8 2.3E-18 5E-23 129.1 12.2 108 85-204 6-121 (123)
67 cd04051 C2_SRC2_like C2 domain 99.8 1.9E-18 4.1E-23 130.0 11.1 106 94-206 1-114 (125)
68 cd04045 C2C_Tricalbin-like C2 99.8 6.9E-18 1.5E-22 126.0 13.8 102 93-207 1-104 (120)
69 cd04032 C2_Perforin C2 domain 99.8 1.9E-18 4.1E-23 129.8 10.7 92 90-181 25-118 (127)
70 cd08405 C2B_Synaptotagmin-7 C2 99.8 9.6E-19 2.1E-23 133.5 9.2 119 85-203 7-134 (136)
71 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.8 2.3E-18 5E-23 135.1 11.4 94 90-183 24-127 (162)
72 cd08690 C2_Freud-1 C2 domain f 99.8 1.1E-17 2.3E-22 129.5 14.5 122 95-237 4-143 (155)
73 cd08403 C2B_Synaptotagmin-3-5- 99.8 1.8E-18 3.9E-23 131.7 9.4 118 85-202 6-132 (134)
74 cd04052 C2B_Tricalbin-like C2 99.8 1E-17 2.2E-22 123.5 12.9 98 112-247 12-111 (111)
75 cd08409 C2B_Synaptotagmin-15 C 99.8 3.1E-18 6.7E-23 130.9 9.8 119 85-203 7-135 (137)
76 cd08410 C2B_Synaptotagmin-17 C 99.8 3.1E-18 6.7E-23 130.6 9.5 96 85-180 6-110 (135)
77 cd04009 C2B_Munc13-like C2 dom 99.8 5.7E-18 1.2E-22 128.8 10.1 97 86-182 9-118 (133)
78 cd04040 C2D_Tricalbin-like C2 99.8 2.8E-17 6.1E-22 121.7 13.3 100 95-206 1-103 (115)
79 cd08676 C2A_Munc13-like C2 dom 99.8 1.2E-17 2.7E-22 129.2 11.5 90 88-181 23-143 (153)
80 PLN03008 Phospholipase D delta 99.8 1.8E-17 3.8E-22 154.7 14.6 130 86-248 7-180 (868)
81 cd08383 C2A_RasGAP C2 domain ( 99.7 5.7E-17 1.2E-21 120.3 12.8 112 95-244 2-117 (117)
82 cd08691 C2_NEDL1-like C2 domai 99.7 1.7E-16 3.7E-21 120.8 15.4 103 94-207 2-122 (137)
83 KOG0696 Serine/threonine prote 99.7 1.6E-18 3.5E-23 149.5 4.2 99 93-204 180-286 (683)
84 cd04037 C2E_Ferlin C2 domain f 99.7 4.5E-17 9.8E-22 122.3 11.6 88 94-181 1-92 (124)
85 cd08675 C2B_RasGAP C2 domain s 99.7 3.6E-17 7.8E-22 124.9 10.9 101 95-207 1-121 (137)
86 cd04021 C2_E3_ubiquitin_ligase 99.7 2.4E-16 5.1E-21 118.6 15.2 90 93-183 2-92 (125)
87 cd08686 C2_ABR C2 domain in th 99.7 1.3E-16 2.8E-21 117.2 13.3 81 95-180 1-93 (118)
88 cd00276 C2B_Synaptotagmin C2 d 99.7 2.4E-17 5.1E-22 125.3 8.9 94 86-179 7-109 (134)
89 PLN03200 cellulose synthase-in 99.7 3.3E-17 7.1E-22 165.2 11.8 123 86-246 1973-2101(2102)
90 KOG1028 Ca2+-dependent phospho 99.7 1.1E-16 2.3E-21 143.1 13.6 110 85-206 159-275 (421)
91 cd04026 C2_PKC_alpha_gamma C2 99.7 1.3E-16 2.9E-21 120.9 11.6 102 93-207 13-122 (131)
92 cd04048 C2A_Copine C2 domain f 99.7 1.8E-16 4E-21 118.3 11.8 86 98-183 5-103 (120)
93 cd00275 C2_PLC_like C2 domain 99.7 1.6E-15 3.4E-20 114.3 14.4 88 93-181 2-100 (128)
94 cd04035 C2A_Rabphilin_Doc2 C2 99.7 5.1E-16 1.1E-20 116.4 10.4 97 86-183 8-114 (123)
95 cd04047 C2B_Copine C2 domain s 99.6 3.4E-15 7.3E-20 109.7 10.1 85 96-181 3-99 (110)
96 PF00168 C2: C2 domain; Inter 99.6 9E-15 2E-19 101.6 9.6 80 95-174 1-85 (85)
97 KOG1011 Neurotransmitter relea 99.6 5.9E-15 1.3E-19 132.7 8.1 130 86-234 288-429 (1283)
98 KOG1028 Ca2+-dependent phospho 99.5 2.1E-14 4.5E-19 128.4 9.2 122 83-204 288-418 (421)
99 KOG2059 Ras GTPase-activating 99.5 1.9E-14 4.2E-19 130.4 8.6 101 93-206 5-107 (800)
100 cd08374 C2F_Ferlin C2 domain s 99.5 5.4E-13 1.2E-17 100.5 10.4 90 95-184 2-125 (133)
101 smart00239 C2 Protein kinase C 99.5 1.1E-12 2.3E-17 93.4 11.2 91 94-184 1-96 (101)
102 cd00030 C2 C2 domain. The C2 d 99.4 1.6E-12 3.5E-17 92.0 11.1 87 95-181 1-90 (102)
103 PLN02270 phospholipase D alpha 99.4 4.6E-12 9.9E-17 118.7 14.1 125 91-248 6-151 (808)
104 KOG1031 Predicted Ca2+-depende 99.4 2.4E-12 5.3E-17 114.9 10.5 114 92-207 2-121 (1169)
105 PLN02223 phosphoinositide phos 99.4 8.8E-12 1.9E-16 112.5 13.6 96 92-187 408-515 (537)
106 COG5038 Ca2+-dependent lipid-b 99.3 2E-11 4.4E-16 116.6 12.3 96 88-183 431-530 (1227)
107 PLN02952 phosphoinositide phos 99.3 7.6E-11 1.7E-15 108.5 14.3 93 92-184 469-574 (599)
108 COG5038 Ca2+-dependent lipid-b 99.3 1.1E-11 2.4E-16 118.3 8.0 103 82-184 1029-1134(1227)
109 KOG0703 Predicted GTPase-activ 99.2 3.1E-12 6.6E-17 106.4 2.9 55 1-59 81-135 (287)
110 KOG0169 Phosphoinositide-speci 99.2 4.7E-11 1E-15 110.1 10.4 95 94-188 617-723 (746)
111 PLN02230 phosphoinositide phos 99.2 9.1E-11 2E-15 107.8 12.3 96 92-187 468-576 (598)
112 PLN02222 phosphoinositide phos 99.2 2.5E-10 5.3E-15 104.8 13.6 96 92-187 451-559 (581)
113 PLN02228 Phosphoinositide phos 99.2 4.3E-10 9.4E-15 103.0 13.8 96 92-187 430-539 (567)
114 cd08689 C2_fungal_Pkc1p C2 dom 99.1 4.7E-10 1E-14 80.0 8.7 89 95-188 1-94 (109)
115 KOG1328 Synaptic vesicle prote 99.1 4.3E-11 9.4E-16 109.3 1.4 95 87-181 941-1048(1103)
116 KOG1264 Phospholipase C [Lipid 99.0 1.6E-09 3.4E-14 100.3 9.2 94 93-186 1065-1166(1267)
117 smart00105 ArfGap Putative GTP 99.0 4.5E-10 9.8E-15 82.5 3.7 51 2-52 59-109 (112)
118 PLN02352 phospholipase D epsil 98.9 1.2E-08 2.6E-13 95.8 13.0 118 91-248 8-133 (758)
119 KOG0905 Phosphoinositide 3-kin 98.9 8.9E-10 1.9E-14 105.2 4.8 103 91-205 1522-1634(1639)
120 KOG1328 Synaptic vesicle prote 98.9 2.8E-10 6.2E-15 104.0 0.5 123 91-231 112-303 (1103)
121 KOG0705 GTPase-activating prot 98.9 1.2E-09 2.6E-14 97.7 4.3 52 3-55 570-621 (749)
122 KOG1326 Membrane-associated pr 98.8 3.7E-09 8.1E-14 99.8 4.5 117 64-180 573-704 (1105)
123 PF01412 ArfGap: Putative GTPa 98.7 6.5E-09 1.4E-13 76.9 1.6 46 3-49 70-115 (116)
124 cd08683 C2_C2cd3 C2 domain fou 98.6 1.3E-07 2.8E-12 69.8 6.9 98 95-203 1-142 (143)
125 KOG2059 Ras GTPase-activating 98.6 1.1E-07 2.4E-12 87.2 6.9 95 100-206 138-253 (800)
126 KOG1013 Synaptic vesicle prote 98.6 8.1E-08 1.7E-12 81.1 5.4 99 82-180 222-329 (362)
127 PLN03119 putative ADP-ribosyla 98.5 7.3E-08 1.6E-12 86.6 4.3 57 2-58 76-132 (648)
128 PLN03131 hypothetical protein; 98.4 1.6E-07 3.5E-12 85.2 4.0 54 2-55 76-129 (705)
129 PLN02964 phosphatidylserine de 98.4 6.3E-07 1.4E-11 83.7 6.6 93 86-184 47-141 (644)
130 KOG1013 Synaptic vesicle prote 98.3 7.8E-08 1.7E-12 81.2 -0.8 100 85-184 85-194 (362)
131 KOG1011 Neurotransmitter relea 98.3 2.5E-06 5.4E-11 78.0 8.3 112 93-216 1125-1247(1283)
132 KOG2060 Rab3 effector RIM1 and 98.3 4.5E-07 9.9E-12 77.9 2.4 110 87-207 263-380 (405)
133 cd08684 C2A_Tac2-N C2 domain f 98.1 5.7E-06 1.2E-10 57.0 4.4 86 96-183 2-95 (103)
134 KOG1326 Membrane-associated pr 97.8 4.6E-06 1E-10 79.4 -0.8 88 93-180 206-304 (1105)
135 KOG3837 Uncharacterized conser 97.7 2.2E-05 4.8E-10 68.4 2.8 92 93-184 367-477 (523)
136 KOG1327 Copine [Signal transdu 97.5 0.00034 7.3E-09 63.6 6.9 83 99-182 142-236 (529)
137 KOG0818 GTPase-activating prot 97.2 0.00011 2.4E-09 65.5 0.6 53 3-55 65-125 (669)
138 KOG0521 Putative GTPase activa 97.0 0.00027 5.9E-09 68.0 1.6 53 3-55 483-536 (785)
139 cd08693 C2_PI3K_class_I_beta_d 97.0 0.0083 1.8E-07 47.5 9.4 88 92-180 7-120 (173)
140 cd08398 C2_PI3K_class_I_alpha 96.9 0.011 2.3E-07 46.1 9.4 86 92-180 7-106 (158)
141 KOG1452 Predicted Rho GTPase-a 96.9 0.0021 4.5E-08 54.6 5.7 94 86-180 44-141 (442)
142 KOG1265 Phospholipase C [Lipid 96.9 0.0016 3.5E-08 62.0 5.3 89 92-187 702-801 (1189)
143 cd08380 C2_PI3K_like C2 domain 96.9 0.009 2E-07 46.4 8.9 88 93-180 8-107 (156)
144 PF15627 CEP76-C2: CEP76 C2 do 96.8 0.027 5.9E-07 43.5 10.4 94 90-183 6-118 (156)
145 cd08397 C2_PI3K_class_III C2 d 96.5 0.015 3.2E-07 45.4 7.5 69 112-180 29-107 (159)
146 COG5347 GTPase-activating prot 96.3 0.0053 1.1E-07 53.1 4.1 49 2-50 76-125 (319)
147 PF10358 NT-C2: N-terminal C2 96.2 0.38 8.2E-06 36.4 14.3 90 91-183 5-107 (143)
148 PF12416 DUF3668: Cep120 prote 96.0 0.14 3.1E-06 44.8 11.8 102 95-206 2-113 (340)
149 cd08687 C2_PKN-like C2 domain 95.9 0.15 3.3E-06 35.6 9.2 63 113-180 9-72 (98)
150 cd04012 C2A_PI3K_class_II C2 d 95.9 0.054 1.2E-06 42.7 8.0 90 91-180 6-119 (171)
151 cd08399 C2_PI3K_class_I_gamma 95.6 0.13 2.8E-06 40.8 9.0 88 93-180 10-122 (178)
152 PF00792 PI3K_C2: Phosphoinosi 95.6 0.12 2.6E-06 39.4 8.6 54 127-180 23-85 (142)
153 cd08695 C2_Dock-B C2 domains f 95.0 0.5 1.1E-05 37.8 10.7 54 125-178 54-112 (189)
154 cd08694 C2_Dock-A C2 domains f 94.1 1.1 2.4E-05 36.0 10.8 55 124-178 53-114 (196)
155 PF07162 B9-C2: Ciliary basal 93.9 0.99 2.1E-05 35.4 10.2 78 95-177 4-101 (168)
156 PF14429 DOCK-C2: C2 domain in 93.7 0.29 6.4E-06 39.0 6.9 54 126-179 61-120 (184)
157 PF15625 CC2D2AN-C2: CC2D2A N- 93.4 1.5 3.2E-05 34.4 10.4 69 112-181 36-107 (168)
158 KOG1327 Copine [Signal transdu 93.4 0.4 8.6E-06 44.1 7.9 60 126-185 43-107 (529)
159 smart00142 PI3K_C2 Phosphoinos 93.3 0.75 1.6E-05 32.8 7.8 68 95-162 13-91 (100)
160 cd08679 C2_DOCK180_related C2 90.1 1.4 3E-05 34.9 6.9 53 126-179 55-115 (178)
161 KOG1329 Phospholipase D1 [Lipi 90.0 3.8 8.3E-05 40.1 10.7 82 113-206 138-221 (887)
162 cd08696 C2_Dock-C C2 domains f 88.6 2 4.4E-05 34.1 6.7 55 125-179 55-118 (179)
163 KOG2419 Phosphatidylserine dec 88.6 0.058 1.3E-06 50.2 -2.3 82 86-168 273-361 (975)
164 PF11618 DUF3250: Protein of u 88.5 6.3 0.00014 28.5 8.7 66 116-183 2-76 (107)
165 cd08697 C2_Dock-D C2 domains f 87.2 3.2 6.9E-05 33.2 7.1 55 125-179 57-123 (185)
166 KOG1117 Rho- and Arf-GTPase ac 85.1 0.57 1.2E-05 45.3 2.1 48 3-51 357-404 (1186)
167 PTZ00447 apical membrane antig 79.3 37 0.00079 29.9 10.6 82 94-180 59-142 (508)
168 KOG4269 Rac GTPase-activating 78.0 1.4 3.1E-05 42.8 2.1 109 67-180 733-856 (1112)
169 KOG0694 Serine/threonine prote 68.4 1.8 3.9E-05 41.0 0.3 68 112-180 27-95 (694)
170 PLN03114 ADP-ribosylation fact 60.2 14 0.00031 32.5 4.1 51 2-52 78-130 (395)
171 PF14909 SPATA6: Spermatogenes 49.3 1.2E+02 0.0025 23.1 9.4 84 95-181 4-100 (140)
172 PF01060 DUF290: Transthyretin 43.6 62 0.0013 21.7 4.5 26 151-176 11-36 (80)
173 PF14924 DUF4497: Protein of u 42.2 1.2E+02 0.0026 21.8 6.1 33 151-183 28-63 (112)
174 TIGR03711 acc_sec_asp3 accesso 40.1 1.6E+02 0.0035 22.2 6.6 56 189-246 31-89 (135)
175 KOG0906 Phosphatidylinositol 3 36.1 36 0.00078 32.6 3.0 42 138-179 78-123 (843)
176 KOG4027 Uncharacterized conser 35.5 2.1E+02 0.0047 22.3 7.1 41 138-178 65-109 (187)
177 KOG0904 Phosphatidylinositol 3 34.8 86 0.0019 31.2 5.4 86 93-180 343-456 (1076)
178 PF12416 DUF3668: Cep120 prote 34.3 2.7E+02 0.0058 24.6 8.1 89 91-184 190-297 (340)
179 PF15432 Sec-ASP3: Accessory S 34.0 2E+02 0.0043 21.5 6.4 59 189-247 20-79 (128)
180 PF10409 PTEN_C2: C2 domain of 27.7 2.5E+02 0.0053 20.6 9.7 86 94-180 5-97 (134)
181 PF10484 MRP-S23: Mitochondria 22.9 62 0.0014 24.1 1.8 34 11-44 33-72 (127)
182 KOG3543 Ca2+-dependent activat 21.3 2.3E+02 0.0049 27.4 5.4 82 93-176 341-425 (1218)
183 KOG0702 Predicted GTPase-activ 21.1 1.7E+02 0.0036 27.2 4.4 49 5-54 84-133 (524)
No 1
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=100.00 E-value=2e-32 Score=208.90 Aligned_cols=161 Identities=51% Similarity=0.760 Sum_probs=152.3
Q ss_pred ceeeeEEEEEEEEeecCCCCCC-CCCCcEEEEEECCeEEeeeeecCcCCceeeeeEEEEeeCCCccEEEEEEecCCCCCC
Q 025708 89 VEFIGLLKVKVVKGINLAIRDM-MSSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDTFSAD 167 (249)
Q Consensus 89 ~~~~g~L~V~v~~a~~L~~~~~-~~~dpyv~v~l~~~~~kT~~~~~t~~P~W~e~f~f~v~~~~~~L~i~V~d~~~~~~d 167 (249)
..+.|.|+|.|++|.+|..+|. +++||||++.+++++.+|+++.+++||+|||.|+|.+.+....|+++|||+|++++|
T Consensus 2 ~~~vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~q~lkT~~v~~n~NPeWNe~ltf~v~d~~~~lkv~VyD~D~fs~d 81 (168)
T KOG1030|consen 2 EMLVGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGNQKLKTRVVYKNLNPEWNEELTFTVKDPNTPLKVTVYDKDTFSSD 81 (168)
T ss_pred CccceEEEEEEEeecCeeeeccccCCCCeEEEEECCeeeeeeeecCCCCCcccceEEEEecCCCceEEEEEEeCCCCCcc
Confidence 3578999999999999999999 699999999999999999999999999999999999999889999999999999999
Q ss_pred CeeEEEEEechhhhhhhhhcC-CCCCcCCeeeeeeEecCCCccccCCceeeeCCeEEEEEEEEeccccCceEEEEEEEEe
Q 025708 168 DIMGEAEIDIQPLLTSALAFG-DPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVESGELELELEWMP 246 (249)
Q Consensus 168 ~~iG~~~i~l~~l~~~~~~~~-~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~g~~~~~~~l~l~~~~~G~i~l~l~~~~ 246 (249)
|+||++.|+|..++....... ......+..+..|++..+++++.++.+.+.+|++.|++.+++++.+.|+++++++|++
T Consensus 82 D~mG~A~I~l~p~~~~~~~~~l~~~~~~gt~~~~v~~s~dn~~~~es~i~~s~~~~~q~~~l~l~~ve~g~~e~~~~~~~ 161 (168)
T KOG1030|consen 82 DFMGEATIPLKPLLEAQKMDYLKLELLTGTAIGKVLLSRDNCLNEESAIIRSFGKIVQDYILRLQNVECGELEIQLEWIK 161 (168)
T ss_pred cccceeeeccHHHHHHhhhhccccccCCCcEeeEEEeccccccccceEEEecCChhhhhhccchhhcCcceeeeeeeEec
Confidence 999999999999998887774 4567888999999999999999999999999999999999999999999999999999
Q ss_pred CCC
Q 025708 247 LDQ 249 (249)
Q Consensus 247 ~~~ 249 (249)
.+|
T Consensus 162 ~~~ 164 (168)
T KOG1030|consen 162 LPG 164 (168)
T ss_pred Ccc
Confidence 865
No 2
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.97 E-value=1.4e-29 Score=194.61 Aligned_cols=144 Identities=60% Similarity=0.869 Sum_probs=135.6
Q ss_pred eEEEEEEEEeecCCCCCCCCCCcEEEEEECCeEEeeeeecCcCCceeeeeEEEEeeCCCccEEEEEEecCCCCCCCeeEE
Q 025708 93 GLLKVKVVKGINLAIRDMMSSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDTFSADDIMGE 172 (249)
Q Consensus 93 g~L~V~v~~a~~L~~~~~~~~dpyv~v~l~~~~~kT~~~~~t~~P~W~e~f~f~v~~~~~~L~i~V~d~~~~~~d~~iG~ 172 (249)
|.|+|+|++|++|+..+...+||||++.++.++.+|++++++.||.|||+|.|.+......|.|+|||++.++.|++||.
T Consensus 2 G~L~V~Vi~a~nL~~~d~~~sDPYV~v~~g~~~~kT~vvk~t~nP~WnE~f~f~i~~~~~~l~~~V~D~d~~~~dd~iG~ 81 (145)
T cd04038 2 GLLKVRVVRGTNLAVRDFTSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNPMAPLKLEVFDKDTFSKDDSMGE 81 (145)
T ss_pred eEEEEEEEeeECCCCCCCCCcCcEEEEEECCEEEEeeeEcCCCCCeecccEEEEecCCCCEEEEEEEECCCCCCCCEEEE
Confidence 78999999999999887778899999999999999999999999999999999998877889999999999999999999
Q ss_pred EEEechhhhhhhhhcCCCCCcCCeeeeeeEecCCCccccCCceeeeCCeEEEEEEEEeccccCc
Q 025708 173 AEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVESG 236 (249)
Q Consensus 173 ~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~g~~~~~~~l~l~~~~~G 236 (249)
+.+++.++.............++..+..|+|..+++|++++.+.+.+|++.|+++|+|+++++|
T Consensus 82 a~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~l~~~~~g 145 (145)
T cd04038 82 AEIDLEPLVEAAKLDHLRDTPGGTQIKKVLPSVENCLASESHITWKDGKIVQDLVLKLRNVESG 145 (145)
T ss_pred EEEEHHHhhhhhhhhccccCCCCEEEEEEecCCCceEeccceEEEECCEEEEEEEEEecccccC
Confidence 9999999998877665566788999999999999999999999999999999999999999987
No 3
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.93 E-value=1.3e-24 Score=162.03 Aligned_cols=118 Identities=21% Similarity=0.461 Sum_probs=99.4
Q ss_pred eEEEEEEEEeecCCCCCCCCCCcEEEEEECCeEEeeeeecC-cCCceeeeeEEEEeeCCCccEEEEEEecCCCCCCCeeE
Q 025708 93 GLLKVKVVKGINLAIRDMMSSDPYVVLRLGQQTVQTTIVKS-NLNPVWNEELMLSVPQEYGPVKLEVFDHDTFSADDIMG 171 (249)
Q Consensus 93 g~L~V~v~~a~~L~~~~~~~~dpyv~v~l~~~~~kT~~~~~-t~~P~W~e~f~f~v~~~~~~L~i~V~d~~~~~~d~~iG 171 (249)
|+|.|+|++|++|+..+.+.+||||++.++.++++|+++.+ +.||+|||+|.|.+......|.|+|||++.+++|++||
T Consensus 2 g~L~v~v~~Ak~l~~~~~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~v~~~~~~l~~~V~d~d~~~~dd~iG 81 (121)
T cd04016 2 GRLSITVVQAKLVKNYGLTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLPEGVDSIYIEIFDERAFTMDERIA 81 (121)
T ss_pred cEEEEEEEEccCCCcCCCCCCCceEEEEECCEEEEeEEccCCCCCCccCeEEEEEecCCCcEEEEEEEeCCCCcCCceEE
Confidence 79999999999998777569999999999999999999876 79999999999999875578999999999999999999
Q ss_pred EEEEechh-hhhhhhhcCCCCCcCCeeeeeeEecCCCccccCCceeeeCCeEEEEEEEEeccccCceEEEEEEE
Q 025708 172 EAEIDIQP-LLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVESGELELELEW 244 (249)
Q Consensus 172 ~~~i~l~~-l~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~g~~~~~~~l~l~~~~~G~i~l~l~~ 244 (249)
++.++|.. +. .+...+.||++... -.....|+|+|.|.|
T Consensus 82 ~~~i~l~~~~~------------~g~~~~~W~~L~~~----------------------~~~~~~g~i~l~l~y 121 (121)
T cd04016 82 WTHITIPESVF------------NGETLDDWYSLSGK----------------------QGEDKEGMINLVFSY 121 (121)
T ss_pred EEEEECchhcc------------CCCCccccEeCcCc----------------------cCCCCceEEEEEEeC
Confidence 99999964 53 23347899986442 011357999999976
No 4
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.90 E-value=1.2e-22 Score=153.20 Aligned_cols=102 Identities=23% Similarity=0.518 Sum_probs=89.0
Q ss_pred EEEEEEEeecCCCCCCC-CCCcEEEEEECCeEEeeeeecCcCCceeeeeEEEEeeC------CCccEEEEEEecCCCCCC
Q 025708 95 LKVKVVKGINLAIRDMM-SSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQ------EYGPVKLEVFDHDTFSAD 167 (249)
Q Consensus 95 L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~~~~kT~~~~~t~~P~W~e~f~f~v~~------~~~~L~i~V~d~~~~~~d 167 (249)
++|+|++|+||+..+.. .+||||++.++..+++|++++++.||+|||+|.|.+.. ....|.|+|||++.+++|
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~~~d 80 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLLGLD 80 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEECCeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccccCCC
Confidence 57999999999988775 89999999999999999999999999999999999876 356899999999999999
Q ss_pred CeeEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEecCC
Q 025708 168 DIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDD 206 (249)
Q Consensus 168 ~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~~~ 206 (249)
++||++.++|.++... .+.....||+|..
T Consensus 81 ~~iG~~~i~l~~l~~~----------~~~~~~~W~~L~~ 109 (126)
T cd08682 81 KFLGQVSIPLNDLDED----------KGRRRTRWFKLES 109 (126)
T ss_pred ceeEEEEEEHHHhhcc----------CCCcccEEEECcC
Confidence 9999999999998531 2334678999654
No 5
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.89 E-value=8.8e-22 Score=147.35 Aligned_cols=119 Identities=34% Similarity=0.533 Sum_probs=100.3
Q ss_pred EEEEEEEEeecCCCCCCC-CCCcEEEEEECC-eEEeeeeecCcCCceeeeeEEEEeeCCCccEEEEEEecCCCCCCCeeE
Q 025708 94 LLKVKVVKGINLAIRDMM-SSDPYVVLRLGQ-QTVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDTFSADDIMG 171 (249)
Q Consensus 94 ~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~-~~~kT~~~~~t~~P~W~e~f~f~v~~~~~~L~i~V~d~~~~~~d~~iG 171 (249)
.|+|+|++|++|+..+.. .+||||++.+++ ..++|++++++.||.|||.|.|.+......|.|+|||++.+++|++||
T Consensus 1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~l~~~v~D~d~~~~~~~iG 80 (121)
T cd04042 1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDVTQPLYIKVFDYDRGLTDDFMG 80 (121)
T ss_pred CeEEEEEEeeCCCCcCCCCCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEecCCCCeEEEEEEeCCCCCCCcceE
Confidence 389999999999988875 899999999987 568999999999999999999998775678999999999999999999
Q ss_pred EEEEechhhhhhhhhcCCCCCcCCeeeeeeEecCCCccccCCceeeeCCeEEEEEEEEeccccCceEEEEEEEEe
Q 025708 172 EAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVESGELELELEWMP 246 (249)
Q Consensus 172 ~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~g~~~~~~~l~l~~~~~G~i~l~l~~~~ 246 (249)
.+.++|.++.. +.....|++|.+.. .....|+|+|.+++.|
T Consensus 81 ~~~~~l~~l~~------------~~~~~~~~~L~~~~----------------------~~~~~G~l~l~~~~~~ 121 (121)
T cd04042 81 SAFVDLSTLEL------------NKPTEVKLKLEDPN----------------------SDEDLGYISLVVTLTP 121 (121)
T ss_pred EEEEEHHHcCC------------CCCeEEEEECCCCC----------------------CccCceEEEEEEEECC
Confidence 99999999843 33466788754420 1235799999999875
No 6
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.89 E-value=9.7e-22 Score=145.97 Aligned_cols=113 Identities=32% Similarity=0.498 Sum_probs=97.2
Q ss_pred EEEEEEEEeecCCCCCCC-CCCcEEEEEECCeEEeeeeecCcCCceeeeeEEEEeeCC-CccEEEEEEecCCCCCCCeeE
Q 025708 94 LLKVKVVKGINLAIRDMM-SSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQE-YGPVKLEVFDHDTFSADDIMG 171 (249)
Q Consensus 94 ~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~~~~kT~~~~~t~~P~W~e~f~f~v~~~-~~~L~i~V~d~~~~~~d~~iG 171 (249)
+|+|+|++|++|+..+.. .+||||++++++.+.+|++++++.||.|||+|.|.+... ...|.|+|||++.+++|++||
T Consensus 1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~~~~~iG 80 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGKKDEFIG 80 (116)
T ss_pred CEEEEEEEEECCCCCCCCCCCCcEEEEEECCEeEecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCCCCCeEE
Confidence 478999999999998865 889999999999999999999999999999999998773 678999999999999999999
Q ss_pred EEEEechhhhhhhhhcCCCCCcCCeeeeeeEecCCCccccCCceeeeCCeEEEEEEEEeccccCceEEEEEEEE
Q 025708 172 EAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVESGELELELEWM 245 (249)
Q Consensus 172 ~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~g~~~~~~~l~l~~~~~G~i~l~l~~~ 245 (249)
++.++|.++.. +.....|++ |... +|+|+++++|.
T Consensus 81 ~~~~~l~~l~~------------~~~~~~w~~--------------------------L~~~-~G~~~~~~~~~ 115 (116)
T cd08376 81 RCEIDLSALPR------------EQTHSLELE--------------------------LEDG-EGSLLLLLTLT 115 (116)
T ss_pred EEEEeHHHCCC------------CCceEEEEE--------------------------ccCC-CcEEEEEEEec
Confidence 99999999843 234556665 4432 69999998874
No 7
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.88 E-value=9.9e-22 Score=149.87 Aligned_cols=123 Identities=34% Similarity=0.532 Sum_probs=103.0
Q ss_pred ceeeeEEEEEEEEeecCCCCCCC-CCCcEEEEEECCeEEeeeeecCcCCceeeeeEEEEeeC-CCccEEEEEEecCCCCC
Q 025708 89 VEFIGLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQ-EYGPVKLEVFDHDTFSA 166 (249)
Q Consensus 89 ~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~~~~kT~~~~~t~~P~W~e~f~f~v~~-~~~~L~i~V~d~~~~~~ 166 (249)
....|.|+|+|++|++|+..+.. .+||||++.++...++|++++++.||.|||+|.|.+.. ....|.|+|||++.++.
T Consensus 11 ~~~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~~~~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~~~~ 90 (136)
T cd08375 11 ASGIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRDFFSP 90 (136)
T ss_pred CCCcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECCEeeeccccCCCCCCccCceEEEEecCccCCEEEEEEEECCCCCC
Confidence 34579999999999999988765 89999999999999999999999999999999999976 44679999999999999
Q ss_pred CCeeEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEecCCCccccCCceeeeCCeEEEEEEEEeccccCceEEEEEEE
Q 025708 167 DDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVESGELELELEW 244 (249)
Q Consensus 167 d~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~g~~~~~~~l~l~~~~~G~i~l~l~~ 244 (249)
|++||++.++|.++....... ...+..| +.+.+...|+|+|++.+
T Consensus 91 d~~lG~~~i~l~~l~~~~~~~-------~~~~~~~--------------------------~~~~~~~~g~i~l~~~~ 135 (136)
T cd08375 91 DDFLGRTEIRVADILKETKES-------KGPITKR--------------------------LLLHEVPTGEVVVKLDL 135 (136)
T ss_pred CCeeEEEEEEHHHhccccccC-------CCcEEEE--------------------------eccccccceeEEEEEEe
Confidence 999999999999997532211 1122333 44677889999999986
No 8
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.88 E-value=5.1e-22 Score=148.40 Aligned_cols=113 Identities=39% Similarity=0.733 Sum_probs=98.0
Q ss_pred eEEEEEEEEeecCCCCCC-------CCCCcEEEEEECCeEEeeeeecCcCCceeeeeEEEEeeC-CCccEEEEEEecCCC
Q 025708 93 GLLKVKVVKGINLAIRDM-------MSSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQ-EYGPVKLEVFDHDTF 164 (249)
Q Consensus 93 g~L~V~v~~a~~L~~~~~-------~~~dpyv~v~l~~~~~kT~~~~~t~~P~W~e~f~f~v~~-~~~~L~i~V~d~~~~ 164 (249)
|.|+|+|++|++|+..+. +.+||||++.+++..++|++++++.+|.|+|.|.|.+.. ....|.|+|||++..
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~~~~ 80 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDEDPD 80 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCEeEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEecCCC
Confidence 679999999999998764 368999999999999999999999999999999999875 567899999999988
Q ss_pred CCCCeeEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEecCCCccccCCceeeeCCeEEEEEEEEeccccCceEEEEEEE
Q 025708 165 SADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVESGELELELEW 244 (249)
Q Consensus 165 ~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~g~~~~~~~l~l~~~~~G~i~l~l~~ 244 (249)
++++||.+.++|.++..+ ...+.||+ |.....|+|+|+++|
T Consensus 81 -~~~~iG~~~i~l~~l~~~------------~~~~~w~~--------------------------L~~~~~G~~~~~~~~ 121 (121)
T cd08391 81 -KDDFLGRLSIDLGSVEKK------------GFIDEWLP--------------------------LEDVKSGRLHLKLEW 121 (121)
T ss_pred -CCCcEEEEEEEHHHhccc------------CccceEEE--------------------------CcCCCCceEEEEEeC
Confidence 889999999999998532 23567776 555578999999987
No 9
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.88 E-value=3e-22 Score=149.20 Aligned_cols=115 Identities=33% Similarity=0.582 Sum_probs=96.6
Q ss_pred eEEEEEEEEeecCCCCCCC-CCCcEEEEEECCeEEeeeeec-CcCCceeeeeEEEEeeC-CCccEEEEEEecCCCCCCCe
Q 025708 93 GLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQQTVQTTIVK-SNLNPVWNEELMLSVPQ-EYGPVKLEVFDHDTFSADDI 169 (249)
Q Consensus 93 g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~~~~kT~~~~-~t~~P~W~e~f~f~v~~-~~~~L~i~V~d~~~~~~d~~ 169 (249)
|.|+|+|++|++|+..+.. .+||||++.++..+.+|+++. ++.||.|||.|.|.+.. ....|.|+|||++..+ |++
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~-~~~ 79 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKRK-PDL 79 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCCCceEEEEECCCccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCC-Ccc
Confidence 6899999999999988875 899999999999889999875 47999999999999986 4578999999999876 899
Q ss_pred eEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEecCCCccccCCceeeeCCeEEEEEEEEeccccCceEEEEEEE
Q 025708 170 MGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVESGELELELEW 244 (249)
Q Consensus 170 iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~g~~~~~~~l~l~~~~~G~i~l~l~~ 244 (249)
||++.+++.++..+. ....|+++.. .+..+|+|+|+|+|
T Consensus 80 iG~~~~~l~~~~~~~------------~~~~w~~L~~------------------------~~~~~G~i~l~l~f 118 (118)
T cd08681 80 IGDTEVDLSPALKEG------------EFDDWYELTL------------------------KGRYAGEVYLELTF 118 (118)
T ss_pred eEEEEEecHHHhhcC------------CCCCcEEecc------------------------CCcEeeEEEEEEEC
Confidence 999999999985432 2467887432 23357999999886
No 10
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.87 E-value=2.3e-21 Score=146.38 Aligned_cols=124 Identities=31% Similarity=0.584 Sum_probs=102.6
Q ss_pred eEEEEEEEEeecCCCCCC--C-CCCcEEEEEECCeEEeeeeecCcCCceeeeeEEEEeeC-CCccEEEEEEecCCCCCCC
Q 025708 93 GLLKVKVVKGINLAIRDM--M-SSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQ-EYGPVKLEVFDHDTFSADD 168 (249)
Q Consensus 93 g~L~V~v~~a~~L~~~~~--~-~~dpyv~v~l~~~~~kT~~~~~t~~P~W~e~f~f~v~~-~~~~L~i~V~d~~~~~~d~ 168 (249)
|.|+|+|++|++|+..+. . .+||||++.++..+++|++++++.+|.|||.|.|.+.. ....|.|+|||++.++.++
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~~~~ 80 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFAGKD 80 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECCEEEecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCCCCCC
Confidence 689999999999998886 4 89999999999999999999999999999999999986 5678999999999988999
Q ss_pred eeEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEecCCCccccCCceeeeCCeEEEEEEEEeccccCceEEEEEEE
Q 025708 169 IMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVESGELELELEW 244 (249)
Q Consensus 169 ~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~g~~~~~~~l~l~~~~~G~i~l~l~~ 244 (249)
+||++.++|.++.... .......||++.+..- ......+|+|+|++.|
T Consensus 81 ~lG~~~i~l~~~~~~~---------~~~~~~~w~~L~~~~~-------------------~~~~~~~G~i~l~~~~ 128 (128)
T cd04024 81 YLGEFDIALEEVFADG---------KTGQSDKWITLKSTRP-------------------GKTSVVSGEIHLQFSW 128 (128)
T ss_pred cceEEEEEHHHhhccc---------ccCccceeEEccCccc-------------------CccccccceEEEEEEC
Confidence 9999999999986421 1123568988654200 0123458999999987
No 11
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.87 E-value=6.7e-22 Score=145.50 Aligned_cols=95 Identities=22% Similarity=0.374 Sum_probs=84.8
Q ss_pred cccccceeeeEEEEEEEEeecCCCCCCCCCCcEEEEEECC----eEEeeeeecCcCCceeeeeEEEEeeC---CCccEEE
Q 025708 84 KDVGMVEFIGLLKVKVVKGINLAIRDMMSSDPYVVLRLGQ----QTVQTTIVKSNLNPVWNEELMLSVPQ---EYGPVKL 156 (249)
Q Consensus 84 ~~~~~~~~~g~L~V~v~~a~~L~~~~~~~~dpyv~v~l~~----~~~kT~~~~~t~~P~W~e~f~f~v~~---~~~~L~i 156 (249)
.++.|....+.|+|+|++|++|+ .+ +.+||||++++.. .+++|++.++|+||+|||+|.|.++. ....|.|
T Consensus 5 fsL~Y~~~~~~L~V~vikA~~L~-~~-g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~ 82 (118)
T cd08677 5 YSLSYDKQKAELHVNILEAENIS-VD-AGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDGTLTL 82 (118)
T ss_pred EEEEEcCcCCEEEEEEEEecCCC-CC-CCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCcEEEE
Confidence 35778888999999999999998 32 3689999999953 46899999999999999999999877 4578999
Q ss_pred EEEecCCCCCCCeeEEEEEechhh
Q 025708 157 EVFDHDTFSADDIMGEAEIDIQPL 180 (249)
Q Consensus 157 ~V~d~~~~~~d~~iG~~~i~l~~l 180 (249)
+|||+|+++++++||++.++++++
T Consensus 83 ~V~d~Drfs~~d~IG~v~l~l~~~ 106 (118)
T cd08677 83 TLRCCDRFSRHSTLGELRLKLADV 106 (118)
T ss_pred EEEeCCCCCCCceEEEEEEccccc
Confidence 999999999999999999999986
No 12
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.87 E-value=3e-21 Score=149.45 Aligned_cols=106 Identities=25% Similarity=0.369 Sum_probs=91.0
Q ss_pred EEEEEEEEeecCCCCCCC-CCCcEEEEEECCeEEeeeeecC-cCCceeeeeEEEEeeC-CCccEEEEEEecCCCCCCCee
Q 025708 94 LLKVKVVKGINLAIRDMM-SSDPYVVLRLGQQTVQTTIVKS-NLNPVWNEELMLSVPQ-EYGPVKLEVFDHDTFSADDIM 170 (249)
Q Consensus 94 ~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~~~~kT~~~~~-t~~P~W~e~f~f~v~~-~~~~L~i~V~d~~~~~~d~~i 170 (249)
.|+|+|++|++|+..+.. .+||||++.++++..+|+++.+ +.||+|||.|.|.+.. ....|.|+|||++..+++++|
T Consensus 1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~dd~l 80 (150)
T cd04019 1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPNKDEPL 80 (150)
T ss_pred CEEEEEEEeECCCCCCCCCCCCeEEEEEECCEEeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCCCCCeE
Confidence 389999999999998876 8999999999999999999976 6999999999999876 346899999999998899999
Q ss_pred EEEEEechhhhhhhhhcCCCCCcCCeeeeeeEecCCC
Q 025708 171 GEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDN 207 (249)
Q Consensus 171 G~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~~~~ 207 (249)
|++.++|.++..+. ..+.....||+|.+.
T Consensus 81 G~v~i~L~~l~~~~--------~~~~~~~~W~~L~~~ 109 (150)
T cd04019 81 GRAVIPLNDIERRV--------DDRPVPSRWFSLERP 109 (150)
T ss_pred EEEEEEHHHCcccC--------CCCccCCceEECcCC
Confidence 99999999985431 123457899997664
No 13
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.87 E-value=3.4e-21 Score=144.48 Aligned_cols=101 Identities=25% Similarity=0.377 Sum_probs=89.0
Q ss_pred EEEEEEEEeec---CCCCCCC-CCCcEEEEEECCeEEeeeeecCcCCceeeeeEEEEeeCCCccEEEEEEecCCCC----
Q 025708 94 LLKVKVVKGIN---LAIRDMM-SSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDTFS---- 165 (249)
Q Consensus 94 ~L~V~v~~a~~---L~~~~~~-~~dpyv~v~l~~~~~kT~~~~~t~~P~W~e~f~f~v~~~~~~L~i~V~d~~~~~---- 165 (249)
.|+|+|++|+| |+..+.. .+||||++.++.++.+|++++++.||+|||+|.|.+......|.|+|||++.++
T Consensus 1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~~rTk~~~~~~nP~WnE~f~f~v~~~~~~l~v~V~d~d~~~~~~~ 80 (126)
T cd08379 1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYDPCTVLTVGVFDNSQSHWKEA 80 (126)
T ss_pred CeEEEEEEeECCccccccccCCCCCeeEEEEECCEEeEcCcccCCCCCcceeEEEEEecCCCCEEEEEEEECCCcccccc
Confidence 38999999999 7777765 899999999999999999999999999999999999876678999999999874
Q ss_pred --CCCeeEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEecCC
Q 025708 166 --ADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDD 206 (249)
Q Consensus 166 --~d~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~~~ 206 (249)
.|++||++.++|..+. .+.....||+|.+
T Consensus 81 ~~~dd~lG~~~i~l~~l~------------~~~~~~~~~~L~~ 111 (126)
T cd08379 81 VQPDVLIGKVRIRLSTLE------------DDRVYAHSYPLLS 111 (126)
T ss_pred CCCCceEEEEEEEHHHcc------------CCCEEeeEEEeEe
Confidence 8999999999999984 3446788998543
No 14
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.87 E-value=4.4e-21 Score=144.81 Aligned_cols=120 Identities=24% Similarity=0.342 Sum_probs=98.1
Q ss_pred EEEEEEEEeecCCCCCCC-CCCcEEEEEECCeEEeeeeecCcCCceeeeeEEEEeeCC----CccEEEEEEecCCCC-CC
Q 025708 94 LLKVKVVKGINLAIRDMM-SSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQE----YGPVKLEVFDHDTFS-AD 167 (249)
Q Consensus 94 ~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~~~~kT~~~~~t~~P~W~e~f~f~v~~~----~~~L~i~V~d~~~~~-~d 167 (249)
+|+|+|++|++|+..+.. .+||||++.+++++++|++++++.||.|||.|.|.+... ...|.|+|||++.++ .+
T Consensus 1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~~~d 80 (127)
T cd04022 1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSGRRR 80 (127)
T ss_pred CeEEEEEEeeCCCCCCCCCCcCcEEEEEECCEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCcCCC
Confidence 489999999999988865 899999999999999999999999999999999998752 357999999999886 89
Q ss_pred CeeEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEecCCCccccCCceeeeCCeEEEEEEEEeccccCceEEEEEEEE
Q 025708 168 DIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVESGELELELEWM 245 (249)
Q Consensus 168 ~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~g~~~~~~~l~l~~~~~G~i~l~l~~~ 245 (249)
++||++.+++.++.. .+.....||+|.... .....+|+|+|++.+-
T Consensus 81 ~~lG~v~i~l~~l~~-----------~~~~~~~w~~L~~~~---------------------~~~~~~G~l~l~~~~~ 126 (127)
T cd04022 81 SFLGRVRISGTSFVP-----------PSEAVVQRYPLEKRG---------------------LFSRVRGEIGLKVYIT 126 (127)
T ss_pred CeeeEEEEcHHHcCC-----------CCCccceEeEeeeCC---------------------CCCCccEEEEEEEEEc
Confidence 999999999999852 223467898854320 1223578888888763
No 15
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.86 E-value=8.3e-21 Score=143.09 Aligned_cols=120 Identities=24% Similarity=0.376 Sum_probs=97.9
Q ss_pred EEEEEEEeecCCCCCCCCCCcEEEEEECC--eEEeeeeecCcCCceeeeeEEEEeeCCCccEEEEEEecCCCCCCCeeEE
Q 025708 95 LKVKVVKGINLAIRDMMSSDPYVVLRLGQ--QTVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDTFSADDIMGE 172 (249)
Q Consensus 95 L~V~v~~a~~L~~~~~~~~dpyv~v~l~~--~~~kT~~~~~t~~P~W~e~f~f~v~~~~~~L~i~V~d~~~~~~d~~iG~ 172 (249)
|.|+|++|++|+. ..+.+||||+++++. .+++|++++++.||.|||.|.|.+......|.|+|||++..++|++||+
T Consensus 1 l~v~v~~A~~L~~-~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~~~~~lG~ 79 (126)
T cd08678 1 LLVKNIKANGLSE-AAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSPNSKELLFEVYDNGKKSDSKFLGL 79 (126)
T ss_pred CEEEEEEecCCCC-CCCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCCCCCEEEEEEEECCCCCCCceEEE
Confidence 6799999999988 445899999999973 5689999999999999999999997656789999999999989999999
Q ss_pred EEEechhhhhhhhhcCCCCCcCCeeeeeeEecCCCccccCCceeeeCCeEEEEEEEEeccccCceEEEEEEEEeC
Q 025708 173 AEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVESGELELELEWMPL 247 (249)
Q Consensus 173 ~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~g~~~~~~~l~l~~~~~G~i~l~l~~~~~ 247 (249)
+.++|.++.... ....||++..... -.....|+|++++.|.+-
T Consensus 80 ~~i~l~~l~~~~------------~~~~~~~L~~~~~--------------------~~~~~~G~l~l~~~~~~~ 122 (126)
T cd08678 80 AIVPFDELRKNP------------SGRQIFPLQGRPY--------------------EGDSVSGSITVEFLFMEP 122 (126)
T ss_pred EEEeHHHhccCC------------ceeEEEEecCCCC--------------------CCCCcceEEEEEEEEecc
Confidence 999999995432 3457888543210 012357999999999764
No 16
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.86 E-value=7e-21 Score=142.05 Aligned_cols=111 Identities=29% Similarity=0.473 Sum_probs=93.2
Q ss_pred EEEEEEEeecCCCCCCC-CCCcEEEEEECC---eEEeeeeecCcCCceeeeeEEEEeeC-CCccEEEEEEecCCCCCCCe
Q 025708 95 LKVKVVKGINLAIRDMM-SSDPYVVLRLGQ---QTVQTTIVKSNLNPVWNEELMLSVPQ-EYGPVKLEVFDHDTFSADDI 169 (249)
Q Consensus 95 L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~---~~~kT~~~~~t~~P~W~e~f~f~v~~-~~~~L~i~V~d~~~~~~d~~ 169 (249)
|+|+|++|++|+..+.. .+||||++.++. .+++|++++++.||.|||+|.|.+.. ....|.|+|||++.+ +|++
T Consensus 2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~-~~~~ 80 (119)
T cd04036 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYV-MDDH 80 (119)
T ss_pred eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCC-CCcc
Confidence 78999999999988765 899999999953 56899999999999999999999876 345799999999998 8999
Q ss_pred eEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEecCCCccccCCceeeeCCeEEEEEEEEeccccCceEEEEEEE
Q 025708 170 MGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVESGELELELEW 244 (249)
Q Consensus 170 iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~g~~~~~~~l~l~~~~~G~i~l~l~~ 244 (249)
||++.+++.++.. +.....||+ |....+|+|++++..
T Consensus 81 iG~~~~~l~~l~~------------g~~~~~~~~--------------------------L~~~~~g~l~~~~~~ 117 (119)
T cd04036 81 LGTVLFDVSKLKL------------GEKVRVTFS--------------------------LNPQGKEELEVEFLL 117 (119)
T ss_pred cEEEEEEHHHCCC------------CCcEEEEEE--------------------------CCCCCCceEEEEEEe
Confidence 9999999999843 234556665 566668888888865
No 17
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.86 E-value=5.5e-21 Score=143.42 Aligned_cols=120 Identities=31% Similarity=0.541 Sum_probs=98.5
Q ss_pred eeEEEEEEEEeecCCCCCCC--CCCcEEEEEECC--eEEeeeeecCcCCceeeeeEEEEeeCCCccEEEEEEecCCCCCC
Q 025708 92 IGLLKVKVVKGINLAIRDMM--SSDPYVVLRLGQ--QTVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDTFSAD 167 (249)
Q Consensus 92 ~g~L~V~v~~a~~L~~~~~~--~~dpyv~v~l~~--~~~kT~~~~~t~~P~W~e~f~f~v~~~~~~L~i~V~d~~~~~~d 167 (249)
.|.|+|+|++|++|+..+.. .+||||++.++. ...+|++++++.+|.|||.|.|.+......|.|+|||++..+.|
T Consensus 1 ~g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~~~~~~l~~~v~d~~~~~~d 80 (124)
T cd04044 1 IGVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVNSLTEPLNLTVYDFNDKRKD 80 (124)
T ss_pred CeEEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeCCCCCEEEEEEEecCCCCCC
Confidence 37899999999999965532 689999999987 67999999999999999999999886578999999999998899
Q ss_pred CeeEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEecCCCccccCCceeeeCCeEEEEEEEEeccccCceEEEEEEEEe
Q 025708 168 DIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVESGELELELEWMP 246 (249)
Q Consensus 168 ~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~g~~~~~~~l~l~~~~~G~i~l~l~~~~ 246 (249)
++||.+.++|.++..... ...|.. .+...+...|+|+++|+|.|
T Consensus 81 ~~iG~~~~~l~~l~~~~~------------~~~~~~-----------------------~~~~~~k~~G~i~~~l~~~p 124 (124)
T cd04044 81 KLIGTAEFDLSSLLQNPE------------QENLTK-----------------------NLLRNGKPVGELNYDLRFFP 124 (124)
T ss_pred ceeEEEEEEHHHhccCcc------------ccCcch-----------------------hhhcCCccceEEEEEEEeCC
Confidence 999999999999965432 111111 12234556899999999987
No 18
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.86 E-value=9.4e-21 Score=141.73 Aligned_cols=99 Identities=23% Similarity=0.474 Sum_probs=85.9
Q ss_pred EEEEEEEeecCCCCCC--CCCCcEEEEEECCe-EEeeeeecCcCCceeeeeEEEEeeCCCccEEEEEEecCCCCCCCeeE
Q 025708 95 LKVKVVKGINLAIRDM--MSSDPYVVLRLGQQ-TVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDTFSADDIMG 171 (249)
Q Consensus 95 L~V~v~~a~~L~~~~~--~~~dpyv~v~l~~~-~~kT~~~~~t~~P~W~e~f~f~v~~~~~~L~i~V~d~~~~~~d~~iG 171 (249)
|+|.|++|+||+..+. +.+||||++.++.. ..+|+++++|.||.|||+|.|.+......|.|.|||++.+++|++||
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~~~~~~l~~~v~d~~~~~~~~~iG 81 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRTFRHLSFYIYDRDVLRRDSVIG 81 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcCCCCCEEEEEEEECCCCCCCceEE
Confidence 6899999999998743 37899999999765 57999999999999999999999875679999999999999999999
Q ss_pred EEEEechhhhhhhhhcCCCCCcCCeeeeeeEecC
Q 025708 172 EAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSD 205 (249)
Q Consensus 172 ~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~~ 205 (249)
.+.++|+++.. +...+.||++.
T Consensus 82 ~~~i~l~~l~~------------~~~~~~w~~L~ 103 (121)
T cd08401 82 KVAIKKEDLHK------------YYGKDTWFPLQ 103 (121)
T ss_pred EEEEEHHHccC------------CCCcEeeEEEE
Confidence 99999999853 23467898854
No 19
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.86 E-value=7.2e-21 Score=142.35 Aligned_cols=117 Identities=27% Similarity=0.437 Sum_probs=96.2
Q ss_pred EEEEEEEeecCCCCCCCCCCcEEEEEECCeEEeeeeecCcCCceeeeeEEEEeeC-CCccEEEEEEecCCCCCCCeeEEE
Q 025708 95 LKVKVVKGINLAIRDMMSSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQ-EYGPVKLEVFDHDTFSADDIMGEA 173 (249)
Q Consensus 95 L~V~v~~a~~L~~~~~~~~dpyv~v~l~~~~~kT~~~~~t~~P~W~e~f~f~v~~-~~~~L~i~V~d~~~~~~d~~iG~~ 173 (249)
|+|+|++|++|+.. .+||||++.++....+|++++++.||+|||+|.|.+.. ....|.|+|||++.. .+++||++
T Consensus 2 L~V~Vi~a~~L~~~---~~Dpyv~v~l~~~~~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~-~~~~lG~~ 77 (121)
T cd08378 2 LYVRVVKARGLPAN---SNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKA-KDDFLGGV 77 (121)
T ss_pred EEEEEEEecCCCcc---cCCCEEEEEECCccccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCCC-cCceeeeE
Confidence 78999999999887 67999999999989999999999999999999999876 567899999999987 78999999
Q ss_pred EEechhhhhhhhhcCCCCCcCCeeeeeeEecCCCccccCCceeeeCCeEEEEEEEEeccccCceEEEEEEE
Q 025708 174 EIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVESGELELELEW 244 (249)
Q Consensus 174 ~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~g~~~~~~~l~l~~~~~G~i~l~l~~ 244 (249)
.++|.++..... ..+.....||++.+.. ....+|+|+|.|.|
T Consensus 78 ~i~l~~l~~~~~-------~~~~~~~~W~~L~~~~----------------------~~~~~G~i~l~~~~ 119 (121)
T cd08378 78 CFDLSEVPTRVP-------PDSPLAPQWYRLEDKK----------------------GGRVGGELMLAVWF 119 (121)
T ss_pred EEEhHhCcCCCC-------CCCCCCcceEEccCCC----------------------CCccceEEEEEEEe
Confidence 999999854321 1233467899865531 11246888888876
No 20
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.86 E-value=1.1e-20 Score=140.63 Aligned_cols=102 Identities=21% Similarity=0.282 Sum_probs=86.1
Q ss_pred EEEEEEEEeecCCCCCCCCCCcEEEEEE-C----C--eEEeeeeecCcCCceeeeeEEEEeeCC----CccEEEEEEecC
Q 025708 94 LLKVKVVKGINLAIRDMMSSDPYVVLRL-G----Q--QTVQTTIVKSNLNPVWNEELMLSVPQE----YGPVKLEVFDHD 162 (249)
Q Consensus 94 ~L~V~v~~a~~L~~~~~~~~dpyv~v~l-~----~--~~~kT~~~~~t~~P~W~e~f~f~v~~~----~~~L~i~V~d~~ 162 (249)
+|+|.|++|++|+..+.+.+||||++++ + . ++++|+++.+++||+|||+|.|.+... ...|.|.|||++
T Consensus 1 kL~V~Vi~A~~L~~~d~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~d 80 (120)
T cd08395 1 KVTVKVVAANDLKWQTTGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDYC 80 (120)
T ss_pred CEEEEEEECcCCCcccCCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEec
Confidence 4899999999999887668899999998 3 2 346899999999999999999999752 246999999999
Q ss_pred CCCCCCeeEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEecCCC
Q 025708 163 TFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDN 207 (249)
Q Consensus 163 ~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~~~~ 207 (249)
..+++++||++.++|.++..+ .....|++|...
T Consensus 81 ~~~~dd~IG~~~l~l~~~~~~------------~~~~~w~~L~~~ 113 (120)
T cd08395 81 FARDDRLVGVTVLQLRDIAQA------------GSCACWLPLGRR 113 (120)
T ss_pred ccCCCCEEEEEEEEHHHCcCC------------CcEEEEEECcCc
Confidence 888899999999999999533 357789987554
No 21
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.85 E-value=2.2e-20 Score=139.21 Aligned_cols=89 Identities=29% Similarity=0.533 Sum_probs=82.5
Q ss_pred eEEEEEEEEeecCCCCCCC-CCCcEEEEEECCeEEeeeeecCcCCceeeeeEEEEeeCCCccEEEEEEecCCCCCCCeeE
Q 025708 93 GLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDTFSADDIMG 171 (249)
Q Consensus 93 g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~~~~kT~~~~~t~~P~W~e~f~f~v~~~~~~L~i~V~d~~~~~~d~~iG 171 (249)
|.|.|+|++|++|+..+.. .+||||+++++....+|++++++.||.|+|+|.|.+......|.|+|||++..+++++||
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~~~~~~~~~~l~~~v~d~~~~~~~~~iG 80 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKDIHDVLEVTVYDEDKDKKPEFLG 80 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECCEeeecceecCCcCCccCcEEEEEecCcCCEEEEEEEECCCCCCCceee
Confidence 6899999999999988875 899999999998889999999999999999999998775678999999999988999999
Q ss_pred EEEEechhhh
Q 025708 172 EAEIDIQPLL 181 (249)
Q Consensus 172 ~~~i~l~~l~ 181 (249)
++.+++.++.
T Consensus 81 ~~~~~l~~~~ 90 (119)
T cd08377 81 KVAIPLLSIK 90 (119)
T ss_pred EEEEEHHHCC
Confidence 9999999884
No 22
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.85 E-value=6.1e-21 Score=143.55 Aligned_cols=108 Identities=30% Similarity=0.364 Sum_probs=92.2
Q ss_pred ccccceeeeEEEEEEEEeecCCCCCC--CCCCcEEEEEECC-----eEEeeeeecCcCCceeeeeEEEEeeC---CCccE
Q 025708 85 DVGMVEFIGLLKVKVVKGINLAIRDM--MSSDPYVVLRLGQ-----QTVQTTIVKSNLNPVWNEELMLSVPQ---EYGPV 154 (249)
Q Consensus 85 ~~~~~~~~g~L~V~v~~a~~L~~~~~--~~~dpyv~v~l~~-----~~~kT~~~~~t~~P~W~e~f~f~v~~---~~~~L 154 (249)
++.|....+.|.|.|++|+||+..+. +.+||||++++.. .++||++++++.||+|||+|.|.+.. ....|
T Consensus 7 sl~y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L 86 (125)
T cd04029 7 SLSYDYKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTL 86 (125)
T ss_pred EEEEECCCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHHhCCCEE
Confidence 46677788999999999999998765 3799999999942 35799999999999999999999865 35679
Q ss_pred EEEEEecCCCCCCCeeEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEec
Q 025708 155 KLEVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKS 204 (249)
Q Consensus 155 ~i~V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~ 204 (249)
.|+|||++.++++++||++.++|..+.. ......||+|
T Consensus 87 ~~~V~d~~~~~~~~~lG~~~i~l~~~~~------------~~~~~~w~~l 124 (125)
T cd04029 87 QLSVWHYDRFGRNTFLGEVEIPLDSWNF------------DSQHEECLPL 124 (125)
T ss_pred EEEEEECCCCCCCcEEEEEEEeCCcccc------------cCCcccEEEC
Confidence 9999999999999999999999999833 2357789885
No 23
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.85 E-value=5.7e-21 Score=143.09 Aligned_cols=101 Identities=29% Similarity=0.438 Sum_probs=86.9
Q ss_pred eeEEEEEEEEeecCCCCCCCCCCcEEEEEECC-----eEEeeeeecCcCCceeeeeEEEEe-eC---CCccEEEEEEecC
Q 025708 92 IGLLKVKVVKGINLAIRDMMSSDPYVVLRLGQ-----QTVQTTIVKSNLNPVWNEELMLSV-PQ---EYGPVKLEVFDHD 162 (249)
Q Consensus 92 ~g~L~V~v~~a~~L~~~~~~~~dpyv~v~l~~-----~~~kT~~~~~t~~P~W~e~f~f~v-~~---~~~~L~i~V~d~~ 162 (249)
.+.|.|.|++|++|+..+.+.+||||++++.+ .+++|++++++.||.|||+|.|.+ +. ....|.|+|||++
T Consensus 12 ~~~L~V~Vi~A~~L~~~~~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~d 91 (122)
T cd08381 12 NGTLFVMVMHAKNLPLLDGSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSHD 91 (122)
T ss_pred CCEEEEEEEEeeCCCCCCCCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeCC
Confidence 68999999999999999833899999999952 468999999999999999999997 32 4578999999999
Q ss_pred CCCCCCeeEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEec
Q 025708 163 TFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKS 204 (249)
Q Consensus 163 ~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~ 204 (249)
.++++++||++.++|.++... .....||+|
T Consensus 92 ~~~~~~~lG~~~i~l~~l~~~------------~~~~~W~~L 121 (122)
T cd08381 92 SLVENEFLGGVCIPLKKLDLS------------QETEKWYPL 121 (122)
T ss_pred CCcCCcEEEEEEEeccccccC------------CCccceEEC
Confidence 999999999999999998532 345788874
No 24
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.85 E-value=3.3e-20 Score=139.23 Aligned_cols=101 Identities=31% Similarity=0.511 Sum_probs=88.7
Q ss_pred EEEEEEEEeecCCCCCCC-CCCcEEEEEECCeEEeeeeecCcCCceeeeeEEEEeeC-CCccEEEEEEecCCCCCCCeeE
Q 025708 94 LLKVKVVKGINLAIRDMM-SSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQ-EYGPVKLEVFDHDTFSADDIMG 171 (249)
Q Consensus 94 ~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~~~~kT~~~~~t~~P~W~e~f~f~v~~-~~~~L~i~V~d~~~~~~d~~iG 171 (249)
+|+|+|++|++|+..+.. .+||||+++++....+|++++++.||.|||+|.|.+.. ....|.|+|||++.++.+++||
T Consensus 1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~~~~~iG 80 (123)
T cd04025 1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVSKNDFLG 80 (123)
T ss_pred CEEEEEEEeeCCCCCCCCCCcCceEEEEECCEEEeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCCCCcEeE
Confidence 489999999999988875 88999999999989999999999999999999999877 3467999999999999999999
Q ss_pred EEEEechhhhhhhhhcCCCCCcCCeeeeeeEecCC
Q 025708 172 EAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDD 206 (249)
Q Consensus 172 ~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~~~ 206 (249)
.+.++|.++... .....||.+..
T Consensus 81 ~~~~~l~~l~~~------------~~~~~w~~L~~ 103 (123)
T cd04025 81 KVVFSIQTLQQA------------KQEEGWFRLLP 103 (123)
T ss_pred EEEEEHHHcccC------------CCCCCEEECCC
Confidence 999999998542 23467998655
No 25
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.85 E-value=2e-20 Score=142.19 Aligned_cols=125 Identities=33% Similarity=0.520 Sum_probs=100.0
Q ss_pred EEEEEEEEeecCCCCCCC-CCCcEEEEEECCe-------EEeeeeecCcCCceeeeeEEEEeeCCCccEEEEEEecCCCC
Q 025708 94 LLKVKVVKGINLAIRDMM-SSDPYVVLRLGQQ-------TVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDTFS 165 (249)
Q Consensus 94 ~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~~-------~~kT~~~~~t~~P~W~e~f~f~v~~~~~~L~i~V~d~~~~~ 165 (249)
.|+|+|++|++|+..+.. .+||||++.+.+. ..+|++++++.||.|||+|.|.+......|.|+|||++.++
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~ 80 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPREHRLLFEVFDENRLT 80 (133)
T ss_pred CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCCCCEEEEEEEECCCCC
Confidence 389999999999998865 8999999999654 47999999999999999999998775678999999999999
Q ss_pred CCCeeEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEecCCCccccCCceeeeCCeEEEEEEEEeccccCceEEEEEEEE
Q 025708 166 ADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVESGELELELEWM 245 (249)
Q Consensus 166 ~d~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~g~~~~~~~l~l~~~~~G~i~l~l~~~ 245 (249)
++++||++.+++.++..+.... .......||+|... .-.....|+|+|.+.|+
T Consensus 81 ~~~~iG~~~i~l~~l~~~~~~~------~~~~~~~~~~l~~~---------------------~~~~~~~G~l~~~~~~~ 133 (133)
T cd04033 81 RDDFLGQVEVPLNNLPTETPGN------ERRYTFKDYLLRPR---------------------SSKSRVKGHLRLYMAYL 133 (133)
T ss_pred CCCeeEEEEEEHHHCCCcCccc------cccccchheeeeec---------------------CCCCcceeEEEEEEeeC
Confidence 9999999999999997543211 01246688875421 00123589999999885
No 26
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.84 E-value=2.8e-20 Score=136.26 Aligned_cols=94 Identities=28% Similarity=0.495 Sum_probs=83.7
Q ss_pred eEEEEEEEEeecCCCCCCC-----CCCcEEEEEECCeEEeeeeecCcCCceeeeeEEEEeeC--CCccEEEEEEecCCCC
Q 025708 93 GLLKVKVVKGINLAIRDMM-----SSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQ--EYGPVKLEVFDHDTFS 165 (249)
Q Consensus 93 g~L~V~v~~a~~L~~~~~~-----~~dpyv~v~l~~~~~kT~~~~~t~~P~W~e~f~f~v~~--~~~~L~i~V~d~~~~~ 165 (249)
|+|.|+|++|++|+..+.. .+||||+++++...++|++++++.||+|||.|.|.+.. ....|.|+|||++.++
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~~~ 80 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDKFS 80 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCCCC
Confidence 7899999999999987631 48999999999989999999999999999999999865 3347999999999999
Q ss_pred CCCeeEEEEEechhhhhhhhh
Q 025708 166 ADDIMGEAEIDIQPLLTSALA 186 (249)
Q Consensus 166 ~d~~iG~~~i~l~~l~~~~~~ 186 (249)
+|++||++.++|.+|..+...
T Consensus 81 ~dd~IG~~~l~L~~l~~~~~~ 101 (108)
T cd04039 81 FNDYVATGSLSVQELLNAAPQ 101 (108)
T ss_pred CCcceEEEEEEHHHHHhhCCC
Confidence 999999999999999876543
No 27
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.84 E-value=7.8e-21 Score=144.75 Aligned_cols=120 Identities=25% Similarity=0.359 Sum_probs=98.6
Q ss_pred cccccceeeeEEEEEEEEeecCCCCCC---CCCCcEEEEEECC-----eEEeeeeecCcCCceeeeeEEEEeeC---CCc
Q 025708 84 KDVGMVEFIGLLKVKVVKGINLAIRDM---MSSDPYVVLRLGQ-----QTVQTTIVKSNLNPVWNEELMLSVPQ---EYG 152 (249)
Q Consensus 84 ~~~~~~~~~g~L~V~v~~a~~L~~~~~---~~~dpyv~v~l~~-----~~~kT~~~~~t~~P~W~e~f~f~v~~---~~~ 152 (249)
.++.|....+.|+|.|++|+||+..+. ..+||||++++.. .++||++++++.||+|||.|.|.++. ...
T Consensus 6 ~sL~Y~~~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~~ 85 (138)
T cd08407 6 LSISYLPAANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSELLAAS 85 (138)
T ss_pred EEEEEeCCCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHHHhCcc
Confidence 457788889999999999999999873 2589999999944 24689999999999999999999976 356
Q ss_pred cEEEEEEecCCCCCCCeeEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEe
Q 025708 153 PVKLEVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLK 203 (249)
Q Consensus 153 ~L~i~V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~ 203 (249)
.|.|+|||++.++++++||++.+++...-.+..++..+....+..++.|-.
T Consensus 86 ~L~~~V~d~d~~~~~d~iG~v~lg~~~~g~~~~hW~~ml~~p~~~va~WH~ 136 (138)
T cd08407 86 SVELEVLNQDSPGQSLPLGRCSLGLHTSGTERQHWEEMLDNPRRQIAMWHQ 136 (138)
T ss_pred EEEEEEEeCCCCcCcceeceEEecCcCCCcHHHHHHHHHhCCCCchhEEEE
Confidence 799999999999999999999999986544444444444456777778865
No 28
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.84 E-value=1.4e-19 Score=136.34 Aligned_cols=120 Identities=19% Similarity=0.412 Sum_probs=95.8
Q ss_pred eeEEEEEEEEeecCCCCCCCCCCcEEEEEECCeE-EeeeeecCcCCceeeeeEEEEeeCC-CccEEEEEEecCCCCCCCe
Q 025708 92 IGLLKVKVVKGINLAIRDMMSSDPYVVLRLGQQT-VQTTIVKSNLNPVWNEELMLSVPQE-YGPVKLEVFDHDTFSADDI 169 (249)
Q Consensus 92 ~g~L~V~v~~a~~L~~~~~~~~dpyv~v~l~~~~-~kT~~~~~t~~P~W~e~f~f~v~~~-~~~L~i~V~d~~~~~~d~~ 169 (249)
...|+|+|++|++|+..+ .+||||++.+++.. .+|++ +++.||.|||.|.|.+... ...|.|.|||++.+++|++
T Consensus 3 ~~~L~V~Vi~A~~L~~~~--~~DPYv~v~l~~~~~~kT~v-~~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~~d~~ 79 (126)
T cd08400 3 VRSLQLNVLEAHKLPVKH--VPHPYCVISLNEVKVARTKV-REGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRSKDSE 79 (126)
T ss_pred eeEEEEEEEEeeCCCCCC--CCCeeEEEEECCEeEEEeec-CCCCCCccCCEEEEecCCCCcCEEEEEEEECCCCCCCCe
Confidence 457999999999998754 67999999998754 68887 4689999999999986553 3578999999999999999
Q ss_pred eEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEecCCCccccCCceeeeCCeEEEEEEEEeccccCceEEEEEEEEe
Q 025708 170 MGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVESGELELELEWMP 246 (249)
Q Consensus 170 iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~g~~~~~~~l~l~~~~~G~i~l~l~~~~ 246 (249)
||++.++|..+.. +...+.||++..... -.....|+|+|+|.|.+
T Consensus 80 iG~v~i~l~~l~~------------~~~~~~W~~L~~~~~--------------------~~~~~~G~i~l~l~~~~ 124 (126)
T cd08400 80 IAEVTVQLSKLQN------------GQETDEWYPLSSASP--------------------LKGGEWGSLRIRARYSH 124 (126)
T ss_pred EEEEEEEHhHccC------------CCcccEeEEcccCCC--------------------CCCCcCcEEEEEEEEEc
Confidence 9999999999843 334678998654200 02335799999999975
No 29
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.84 E-value=4.2e-20 Score=141.80 Aligned_cols=105 Identities=23% Similarity=0.351 Sum_probs=88.8
Q ss_pred eeeEEEEEEEEeecCCCCC-C-CCCCcEEEEEECC-----eEEeeeeecCcCCceeeeeEEEEeeCCCccEEEEEE-ecC
Q 025708 91 FIGLLKVKVVKGINLAIRD-M-MSSDPYVVLRLGQ-----QTVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVF-DHD 162 (249)
Q Consensus 91 ~~g~L~V~v~~a~~L~~~~-~-~~~dpyv~v~l~~-----~~~kT~~~~~t~~P~W~e~f~f~v~~~~~~L~i~V~-d~~ 162 (249)
..+.|.|+|++|+||+..+ . +.+||||++++.. .++||+++++++||+|||+|.|.+......|.|+|| |++
T Consensus 27 ~~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~l~~~~L~v~V~~d~~ 106 (146)
T cd04028 27 KKGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVSPTGKTLQVIVWGDYG 106 (146)
T ss_pred CCCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEcCCCCEEEEEEEeCCC
Confidence 3689999999999999864 3 3789999999933 368999999999999999999999866678999999 688
Q ss_pred CCCCCCeeEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEecCCC
Q 025708 163 TFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDN 207 (249)
Q Consensus 163 ~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~~~~ 207 (249)
.++++++||++.|+|+.+-. +.....||+|.+.
T Consensus 107 ~~~~~~~iG~~~i~L~~l~~------------~~~~~~Wy~L~~~ 139 (146)
T cd04028 107 RMDKKVFMGVAQILLDDLDL------------SNLVIGWYKLFPT 139 (146)
T ss_pred CCCCCceEEEEEEEcccccC------------CCCceeEEecCCc
Confidence 88899999999999999832 2246789987654
No 30
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.84 E-value=1.4e-19 Score=137.54 Aligned_cols=117 Identities=27% Similarity=0.524 Sum_probs=97.8
Q ss_pred eeeEEEEEEEEeecCCCCCC-----------CCCCcEEEEEECCeE-EeeeeecCcCCceeeeeEEEEeeCCCccEEEEE
Q 025708 91 FIGLLKVKVVKGINLAIRDM-----------MSSDPYVVLRLGQQT-VQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEV 158 (249)
Q Consensus 91 ~~g~L~V~v~~a~~L~~~~~-----------~~~dpyv~v~l~~~~-~kT~~~~~t~~P~W~e~f~f~v~~~~~~L~i~V 158 (249)
..|.|+|+|++|++|+..+. +.+||||++.++++. .+|++++++.+|.|||+|.|.+.. ...|.|.|
T Consensus 2 ~~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~-~~~l~~~v 80 (132)
T cd04014 2 FTGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVHN-GRNLELTV 80 (132)
T ss_pred cceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcCC-CCEEEEEE
Confidence 46899999999999998775 268999999998765 699999999999999999999974 47899999
Q ss_pred EecCCCCCCCeeEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEecCCCccccCCceeeeCCeEEEEEEEEeccccCceE
Q 025708 159 FDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVESGEL 238 (249)
Q Consensus 159 ~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~g~~~~~~~l~l~~~~~G~i 238 (249)
||++.++.+++||++.++|.++..+ ++.....|++ |+ +.|+|
T Consensus 81 ~d~~~~~~~~~iG~~~i~l~~l~~~----------~~~~~~~w~~--------------------------L~--~~G~l 122 (132)
T cd04014 81 FHDAAIGPDDFVANCTISFEDLIQR----------GSGSFDLWVD--------------------------LE--PQGKL 122 (132)
T ss_pred EeCCCCCCCceEEEEEEEhHHhccc----------CCCcccEEEE--------------------------cc--CCcEE
Confidence 9999988999999999999998653 1223456765 43 57999
Q ss_pred EEEEEEEe
Q 025708 239 ELELEWMP 246 (249)
Q Consensus 239 ~l~l~~~~ 246 (249)
+|+++|..
T Consensus 123 ~l~~~~~~ 130 (132)
T cd04014 123 HVKIELKG 130 (132)
T ss_pred EEEEEEec
Confidence 99999863
No 31
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.84 E-value=2e-20 Score=140.78 Aligned_cols=108 Identities=29% Similarity=0.394 Sum_probs=90.9
Q ss_pred ccccceeeeEEEEEEEEeecCCCCCC--CCCCcEEEEEECC-----eEEeeeeecCcCCceeeeeEEEEeeC---CCccE
Q 025708 85 DVGMVEFIGLLKVKVVKGINLAIRDM--MSSDPYVVLRLGQ-----QTVQTTIVKSNLNPVWNEELMLSVPQ---EYGPV 154 (249)
Q Consensus 85 ~~~~~~~~g~L~V~v~~a~~L~~~~~--~~~dpyv~v~l~~-----~~~kT~~~~~t~~P~W~e~f~f~v~~---~~~~L 154 (249)
++.|....+.|.|+|++|+||++.+. +.+||||++++.+ .+++|++++++.||+|||+|.|.+.. ....|
T Consensus 7 sl~y~~~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L 86 (125)
T cd08393 7 ALDYDPKLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREELPTRVL 86 (125)
T ss_pred EEEEECCCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHHhCCCEE
Confidence 35566667899999999999999885 3899999999942 35799999999999999999999865 34689
Q ss_pred EEEEEecCCCCCCCeeEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEec
Q 025708 155 KLEVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKS 204 (249)
Q Consensus 155 ~i~V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~ 204 (249)
.|+|||++.++++++||++.++|.++... .....||+|
T Consensus 87 ~~~V~d~~~~~~~~~iG~~~i~L~~~~~~------------~~~~~W~~L 124 (125)
T cd08393 87 NLSVWHRDSLGRNSFLGEVEVDLGSWDWS------------NTQPTWYPL 124 (125)
T ss_pred EEEEEeCCCCCCCcEeEEEEEecCccccC------------CCCcceEEC
Confidence 99999999999999999999999998322 235678874
No 32
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.84 E-value=3e-20 Score=140.24 Aligned_cols=111 Identities=23% Similarity=0.243 Sum_probs=93.4
Q ss_pred ccccceeeeEEEEEEEEeecCCCCCC--CCCCcEEEEEECC-----eEEeeeeecCcCCceeeeeEEEEeeC---CCccE
Q 025708 85 DVGMVEFIGLLKVKVVKGINLAIRDM--MSSDPYVVLRLGQ-----QTVQTTIVKSNLNPVWNEELMLSVPQ---EYGPV 154 (249)
Q Consensus 85 ~~~~~~~~g~L~V~v~~a~~L~~~~~--~~~dpyv~v~l~~-----~~~kT~~~~~t~~P~W~e~f~f~v~~---~~~~L 154 (249)
++.|....+.|.|.|++|+||++.+. +.+||||++++.+ .++||++++++.||+|||+|.|.+.. ....|
T Consensus 7 sl~Y~~~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L 86 (128)
T cd08392 7 ALHYNFRTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADLLSSRQL 86 (128)
T ss_pred EEEEeCCCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHHHhCCcEE
Confidence 45677778999999999999998875 4889999999942 36799999999999999999999866 35689
Q ss_pred EEEEEecCCCCCCCeeEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEec
Q 025708 155 KLEVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKS 204 (249)
Q Consensus 155 ~i~V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~ 204 (249)
.|.|||++.++++++||++.|+|.++... ..+.....||++
T Consensus 87 ~v~V~~~~~~~~~~~lG~~~i~L~~~~~~---------~~~~~~~~W~~l 127 (128)
T cd08392 87 QVSVWHSRTLKRRVFLGEVLIPLADWDFE---------DTDSQRFLWYPL 127 (128)
T ss_pred EEEEEeCCCCcCcceEEEEEEEcCCcccC---------CCCccccceEEC
Confidence 99999999999999999999999988322 123467789984
No 33
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.83 E-value=2e-19 Score=140.62 Aligned_cols=122 Identities=28% Similarity=0.519 Sum_probs=99.4
Q ss_pred eeeEEEEEEEEeecCCCCCC-------------------------------CCCCcEEEEEECCeE-EeeeeecCcCCce
Q 025708 91 FIGLLKVKVVKGINLAIRDM-------------------------------MSSDPYVVLRLGQQT-VQTTIVKSNLNPV 138 (249)
Q Consensus 91 ~~g~L~V~v~~a~~L~~~~~-------------------------------~~~dpyv~v~l~~~~-~kT~~~~~t~~P~ 138 (249)
.-|+|.|+|++|++|+.+|. +.+||||++++++.+ .+|++++++.||.
T Consensus 5 lhG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~nP~ 84 (158)
T cd04015 5 LHGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSENPV 84 (158)
T ss_pred EeeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCCCCc
Confidence 46999999999999998872 157999999998755 6999999999999
Q ss_pred eeeeEEEEeeCCCccEEEEEEecCCCCCCCeeEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEecCCCccccCCceeee
Q 025708 139 WNEELMLSVPQEYGPVKLEVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINII 218 (249)
Q Consensus 139 W~e~f~f~v~~~~~~L~i~V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~ 218 (249)
|||+|.|.+......|.|+|||++.++ +++||.+.++++++.. +...+.||++.+.
T Consensus 85 WnE~F~~~~~~~~~~l~~~V~d~d~~~-~~~IG~~~i~l~~l~~------------g~~~~~w~~L~~~----------- 140 (158)
T cd04015 85 WNESFHIYCAHYASHVEFTVKDNDVVG-AQLIGRAYIPVEDLLS------------GEPVEGWLPILDS----------- 140 (158)
T ss_pred cceEEEEEccCCCCEEEEEEEeCCCcC-CcEEEEEEEEhHHccC------------CCCcceEEECcCC-----------
Confidence 999999998776678999999999875 5899999999999853 3357889986542
Q ss_pred CCeEEEEEEEEeccccCceEEEEEEEE
Q 025708 219 DGKVKQKISLKLQNVESGELELELEWM 245 (249)
Q Consensus 219 ~g~~~~~~~l~l~~~~~G~i~l~l~~~ 245 (249)
+|+ .....|+|+|+++|.
T Consensus 141 ~~~---------~~~~~~~l~v~~~f~ 158 (158)
T cd04015 141 NGK---------PPKPGAKIRVSLQFT 158 (158)
T ss_pred CCC---------CCCCCCEEEEEEEEC
Confidence 111 112368999999883
No 34
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.83 E-value=1.7e-19 Score=134.93 Aligned_cols=100 Identities=31% Similarity=0.649 Sum_probs=86.2
Q ss_pred EEEEEEEeecCCCCCCC-CCCcEEEEEECCeE-EeeeeecCcCCceeeeeEEEEeeCCCccEEEEEEecCCCCCCCeeEE
Q 025708 95 LKVKVVKGINLAIRDMM-SSDPYVVLRLGQQT-VQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDTFSADDIMGE 172 (249)
Q Consensus 95 L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~~~-~kT~~~~~t~~P~W~e~f~f~v~~~~~~L~i~V~d~~~~~~d~~iG~ 172 (249)
|.|.|++|++|+..+.. .+||||++.+++.. .+|++++++.||.|||.|.|.+......|.|+|||++.+++|++||+
T Consensus 2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~~~~~l~v~v~d~~~~~~d~~iG~ 81 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPPGFHTVSFYVLDEDTLSRDDVIGK 81 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEEeeCCCCCEEEEEEEECCCCCCCCEEEE
Confidence 78999999999998876 89999999997754 69999999999999999999987766789999999999999999999
Q ss_pred EEEechhhhhhhhhcCCCCCcCCeeeeeeEecC
Q 025708 173 AEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSD 205 (249)
Q Consensus 173 ~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~~ 205 (249)
+.+++..+... +...+.|++|.
T Consensus 82 ~~~~~~~~~~~-----------~~~~~~W~~L~ 103 (121)
T cd04054 82 VSLTREVISAH-----------PRGIDGWMNLT 103 (121)
T ss_pred EEEcHHHhccC-----------CCCCCcEEECe
Confidence 99998877421 12356788753
No 35
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.83 E-value=5e-20 Score=142.04 Aligned_cols=103 Identities=22% Similarity=0.334 Sum_probs=86.0
Q ss_pred EEEEEEEEeecCCCCCCCCCCcEEEEEECC-----eEEeeeeecCcCCceeeeeEEEEee------------C----CCc
Q 025708 94 LLKVKVVKGINLAIRDMMSSDPYVVLRLGQ-----QTVQTTIVKSNLNPVWNEELMLSVP------------Q----EYG 152 (249)
Q Consensus 94 ~L~V~v~~a~~L~~~~~~~~dpyv~v~l~~-----~~~kT~~~~~t~~P~W~e~f~f~v~------------~----~~~ 152 (249)
.|+|+|++|++|+. ..+.+||||++.+.. .+++|++++++.||+|||+|.|.+. . ...
T Consensus 1 kL~V~Vi~ArnL~~-~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~~ 79 (148)
T cd04010 1 KLSVRVIECSDLAL-KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEKL 79 (148)
T ss_pred CEEEEEEeCcCCCC-CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccEE
Confidence 48999999999998 335889999999965 5689999999999999999999985 1 125
Q ss_pred cEEEEEEecCCCCCCCeeEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEecCCCc
Q 025708 153 PVKLEVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNA 208 (249)
Q Consensus 153 ~L~i~V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 208 (249)
.|.|.|||++.+++|+|||++.|+|..+..+ ......||+|.+..
T Consensus 80 ~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~-----------~~~~~~W~~L~~~~ 124 (148)
T cd04010 80 ELRVDLWHASMGGGDVFLGEVRIPLRGLDLQ-----------AGSHQAWYFLQPRE 124 (148)
T ss_pred EEEEEEEcCCCCCCCceeEEEEEeccccccc-----------CCcCcceeecCCcc
Confidence 7999999999988999999999999998433 12457899987653
No 36
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.83 E-value=6.4e-20 Score=134.99 Aligned_cols=103 Identities=40% Similarity=0.687 Sum_probs=89.3
Q ss_pred EEEEEEEeecCCCCCC-C-CCCcEEEEEECCeEEeeeeecCcCCcee-eeeEEEEeeCC---CccEEEEEEecCCCCCCC
Q 025708 95 LKVKVVKGINLAIRDM-M-SSDPYVVLRLGQQTVQTTIVKSNLNPVW-NEELMLSVPQE---YGPVKLEVFDHDTFSADD 168 (249)
Q Consensus 95 L~V~v~~a~~L~~~~~-~-~~dpyv~v~l~~~~~kT~~~~~t~~P~W-~e~f~f~v~~~---~~~L~i~V~d~~~~~~d~ 168 (249)
|.|+|++|++|+.++. . .+||||++.++..+++|++++++.||.| ||+|.|.+... ...|.|+|||++.+++++
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~~~~ 80 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYSAND 80 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEECCeeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCCCCC
Confidence 6899999999998874 3 7899999999999999999999999999 99999998762 468999999999999999
Q ss_pred eeEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEecCC
Q 025708 169 IMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDD 206 (249)
Q Consensus 169 ~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~~~ 206 (249)
+||++.++|.++.... ....+.+||++.+
T Consensus 81 ~iG~~~~~l~~l~~~~---------~~~~~~~w~~l~~ 109 (110)
T cd08688 81 AIGKVYIDLNPLLLKD---------SVSQISGWFPIYD 109 (110)
T ss_pred ceEEEEEeHHHhcccC---------CccccCCeEEccc
Confidence 9999999999996531 1334789998654
No 37
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.83 E-value=5.3e-20 Score=137.89 Aligned_cols=96 Identities=18% Similarity=0.207 Sum_probs=86.1
Q ss_pred ccccceeeeEEEEEEEEeecCCCCCCC-CCCcEEEEEEC--C----eEEeeeeecCcCCceeeeeEEEEeeC---CCccE
Q 025708 85 DVGMVEFIGLLKVKVVKGINLAIRDMM-SSDPYVVLRLG--Q----QTVQTTIVKSNLNPVWNEELMLSVPQ---EYGPV 154 (249)
Q Consensus 85 ~~~~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~--~----~~~kT~~~~~t~~P~W~e~f~f~v~~---~~~~L 154 (249)
++.|....+.|.|+|++|+||+..+.. .+||||++++- . .+++|++++++.||+|||+|.|+++. ....|
T Consensus 6 sL~Y~~~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L 85 (124)
T cd08680 6 GLRYDSGDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTL 85 (124)
T ss_pred EEEECCCCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhhcCEE
Confidence 466778889999999999999988765 78999999983 2 36899999999999999999999876 46789
Q ss_pred EEEEEecCCCCCCCeeEEEEEechhh
Q 025708 155 KLEVFDHDTFSADDIMGEAEIDIQPL 180 (249)
Q Consensus 155 ~i~V~d~~~~~~d~~iG~~~i~l~~l 180 (249)
.|+|||++.++++++||.+.|+|.++
T Consensus 86 ~~~V~~~~~~~~~~~lG~~~i~L~~~ 111 (124)
T cd08680 86 QVDVCSVGPDQQEECLGGAQISLADF 111 (124)
T ss_pred EEEEEeCCCCCceeEEEEEEEEhhhc
Confidence 99999999999999999999999988
No 38
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.83 E-value=9.5e-20 Score=136.89 Aligned_cols=108 Identities=31% Similarity=0.535 Sum_probs=92.4
Q ss_pred ccccceeeeEEEEEEEEeecCCCCCCC-CCCcEEEEEEC---CeEEeeeeecCcCCceeeeeEEEEeeC---CCccEEEE
Q 025708 85 DVGMVEFIGLLKVKVVKGINLAIRDMM-SSDPYVVLRLG---QQTVQTTIVKSNLNPVWNEELMLSVPQ---EYGPVKLE 157 (249)
Q Consensus 85 ~~~~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~---~~~~kT~~~~~t~~P~W~e~f~f~v~~---~~~~L~i~ 157 (249)
++.+....+.|.|+|++|++|+..+.. .+||||++.+. ...++|++++++.||.|||+|.|.+.. ....|.|+
T Consensus 8 sl~y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~ 87 (124)
T cd08387 8 SLEYDKDMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVL 87 (124)
T ss_pred EEEECCCCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEE
Confidence 455666789999999999999988865 89999999994 345899999999999999999999876 24689999
Q ss_pred EEecCCCCCCCeeEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEec
Q 025708 158 VFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKS 204 (249)
Q Consensus 158 V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~ 204 (249)
|||++.++++++||++.++|.++..+ ...+.||++
T Consensus 88 V~d~~~~~~~~~iG~~~i~l~~~~~~------------~~~~~W~~l 122 (124)
T cd08387 88 LYDFDQFSRDECIGVVELPLAEVDLS------------EKLDLWRKI 122 (124)
T ss_pred EEECCCCCCCceeEEEEEecccccCC------------CCcceEEEC
Confidence 99999999999999999999999432 256789874
No 39
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.83 E-value=3.8e-20 Score=139.37 Aligned_cols=120 Identities=13% Similarity=0.201 Sum_probs=98.2
Q ss_pred cccccceeeeEEEEEEEEeecCCCCCCC-CCCcEEEEEEC---C--eEEeeeeecCcC-CceeeeeEEEEeeC--CCccE
Q 025708 84 KDVGMVEFIGLLKVKVVKGINLAIRDMM-SSDPYVVLRLG---Q--QTVQTTIVKSNL-NPVWNEELMLSVPQ--EYGPV 154 (249)
Q Consensus 84 ~~~~~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~---~--~~~kT~~~~~t~-~P~W~e~f~f~v~~--~~~~L 154 (249)
.|++|.+..|+|+|.|++|+||++.... .+||||++++- . .++||+++++|. +|+|||+|.|+++. ....|
T Consensus 5 ~sL~Y~p~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v~l 84 (135)
T cd08692 5 LGTCFQAVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHGIQF 84 (135)
T ss_pred EEeeecCcCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhheeEE
Confidence 4688999999999999999999987443 77999999982 1 468999999996 69999999999987 33468
Q ss_pred EEEEEecCCCCCCCeeEEEEEechhhh-hhhhhcCCCCCcCCeeeeeeEe
Q 025708 155 KLEVFDHDTFSADDIMGEAEIDIQPLL-TSALAFGDPEMFGNMQIGKWLK 203 (249)
Q Consensus 155 ~i~V~d~~~~~~d~~iG~~~i~l~~l~-~~~~~~~~~~~~~~~~~~~w~~ 203 (249)
.|+|||++..+++++||++.++.+... .+.+++.++....+.+++.|-.
T Consensus 85 ~v~v~d~~~~~~n~~IG~v~lG~~~~~~~~~~hW~~m~~~pr~~ia~WH~ 134 (135)
T cd08692 85 LIKLYSRSSVRRKHFLGQVWISSDSSSSEAVEQWKDTIANPEKVVTKWHS 134 (135)
T ss_pred EEEEEeCCCCcCCceEEEEEECCccCCchhhhhHHHHHhCCCCeeeEeec
Confidence 899999999999999999999997743 3345555555667888888864
No 40
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.83 E-value=3.2e-20 Score=141.31 Aligned_cols=120 Identities=20% Similarity=0.251 Sum_probs=96.1
Q ss_pred cccccceeeeEEEEEEEEeecCCCCCCC-CCCcEEEEEECC-----eEEeeeeecCcCCceeeeeEEEEeeC---CCccE
Q 025708 84 KDVGMVEFIGLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQ-----QTVQTTIVKSNLNPVWNEELMLSVPQ---EYGPV 154 (249)
Q Consensus 84 ~~~~~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~-----~~~kT~~~~~t~~P~W~e~f~f~v~~---~~~~L 154 (249)
.++.|....+.|+|+|++|++|+..+.. .+||||++++.. .+.+|+++++++||+|||+|.|.++. ....|
T Consensus 6 ~sL~Y~~~~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~l 85 (136)
T cd08406 6 LSLSYLPTAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQDLSL 85 (136)
T ss_pred EEEEEcCCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHHhCCcEE
Confidence 3566777889999999999999998865 899999999932 25689999999999999999999876 45789
Q ss_pred EEEEEecCCCCCCCeeEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEe
Q 025708 155 KLEVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLK 203 (249)
Q Consensus 155 ~i~V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~ 203 (249)
.|+|||++.++++++||++.++......+..++..+....+..++.|-.
T Consensus 86 ~~~V~~~d~~~~~~~iG~v~lg~~~~g~~~~hW~~ml~~~~~~v~~WH~ 134 (136)
T cd08406 86 RVTVAESTEDGKTPNVGHVIIGPAASGMGLSHWNQMLASLRKPVAMWHP 134 (136)
T ss_pred EEEEEeCCCCCCCCeeEEEEECCCCCChhHHHHHHHHHCCCCeeeEeee
Confidence 9999999999999999999998776544444433333344666777754
No 41
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.82 E-value=3.8e-19 Score=134.19 Aligned_cols=115 Identities=21% Similarity=0.276 Sum_probs=95.6
Q ss_pred EEEeecCCCCCCCCCCcEEEEEECCeEEeeeeecCcCCceeeeeEEEEeeC---CCccEEEEEEecCCCCCCCeeEEEEE
Q 025708 99 VVKGINLAIRDMMSSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQ---EYGPVKLEVFDHDTFSADDIMGEAEI 175 (249)
Q Consensus 99 v~~a~~L~~~~~~~~dpyv~v~l~~~~~kT~~~~~t~~P~W~e~f~f~v~~---~~~~L~i~V~d~~~~~~d~~iG~~~i 175 (249)
|++|++|+. ..+.+||||++.++..+++|++++++.||.|||+|.|.+.. ....|.|+|||++..++|++||++.+
T Consensus 2 vi~a~~L~~-~~g~~Dpyv~v~~~~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~~ 80 (127)
T cd08373 2 VVSLKNLPG-LKGKGDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIGSATV 80 (127)
T ss_pred eEEeeCCcc-cCCCCCCEEEEEECCEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEEEEEE
Confidence 689999998 44489999999999999999999999999999999999864 35789999999999989999999999
Q ss_pred echhhhhhhhhcCCCCCcCCeeeeeeEecCCCccccCCceeeeCCeEEEEEEEEeccccCceEEEEEEEEeCC
Q 025708 176 DIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVESGELELELEWMPLD 248 (249)
Q Consensus 176 ~l~~l~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~g~~~~~~~l~l~~~~~G~i~l~l~~~~~~ 248 (249)
+|.++..+ .....|+++.+. -.....|+|++++.|.|.+
T Consensus 81 ~l~~l~~~------------~~~~~~~~L~~~----------------------~~~~~~~~l~l~~~~~~~~ 119 (127)
T cd08373 81 SLQDLVSE------------GLLEVTEPLLDS----------------------NGRPTGATISLEVSYQPPD 119 (127)
T ss_pred EhhHcccC------------CceEEEEeCcCC----------------------CCCcccEEEEEEEEEeCCC
Confidence 99999543 346678875432 0111358999999999975
No 42
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.82 E-value=4.5e-19 Score=135.19 Aligned_cols=121 Identities=21% Similarity=0.367 Sum_probs=97.7
Q ss_pred EEEEEEEEeecCCCCCCC-CCCcEEEEEECCeEEeeeeecCcCCceeeeeEEEEeeC----------CCccEEEEEEecC
Q 025708 94 LLKVKVVKGINLAIRDMM-SSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQ----------EYGPVKLEVFDHD 162 (249)
Q Consensus 94 ~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~~~~kT~~~~~t~~P~W~e~f~f~v~~----------~~~~L~i~V~d~~ 162 (249)
.|+|+|++|++|+..+.. .+||||++.++..+++|++++++.||.|||.|.|.+.. ....|.|+|||++
T Consensus 2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~d 81 (135)
T cd04017 2 QLRAYIYQARDLLAADKSGLSDPFARVSFLNQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQD 81 (135)
T ss_pred EEEEEEEEeecCcCCCCCCCCCCEEEEEECCeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeCc
Confidence 589999999999998876 89999999999999999999999999999999997532 1246899999999
Q ss_pred CCCCCCeeEEEEE-echhhhhhhhhcCCCCCcCCeeeeeeEecCCCccccCCceeeeCCeEEEEEEEEeccccCceEEEE
Q 025708 163 TFSADDIMGEAEI-DIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVESGELELE 241 (249)
Q Consensus 163 ~~~~d~~iG~~~i-~l~~l~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~g~~~~~~~l~l~~~~~G~i~l~ 241 (249)
..++|++||++.+ ++..+... ........|+++.. .+...|+|.|.
T Consensus 82 ~~~~d~~iG~~~i~~~~~~~~~---------~~~~~~~~W~~L~~------------------------~~~~~Geil~~ 128 (135)
T cd04017 82 SVGKDEFLGRSVAKPLVKLDLE---------EDFPPKLQWFPIYK------------------------GGQSAGELLAA 128 (135)
T ss_pred CCCCCccceEEEeeeeeecccC---------CCCCCCceEEEeec------------------------CCCchhheeEE
Confidence 9999999999987 44333211 13446778998432 23368999999
Q ss_pred EEEEeC
Q 025708 242 LEWMPL 247 (249)
Q Consensus 242 l~~~~~ 247 (249)
++++++
T Consensus 129 ~~~~~~ 134 (135)
T cd04017 129 FELIEV 134 (135)
T ss_pred eEEEEe
Confidence 999886
No 43
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.82 E-value=2.2e-19 Score=131.06 Aligned_cols=100 Identities=26% Similarity=0.449 Sum_probs=87.5
Q ss_pred EEEEEEEEeecCCCCCCC-CCCcEEEEEECCeEEeeeeecCcCCceeeeeEEEEeeC-CCccEEEEEEecCCCCCCCeeE
Q 025708 94 LLKVKVVKGINLAIRDMM-SSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQ-EYGPVKLEVFDHDTFSADDIMG 171 (249)
Q Consensus 94 ~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~~~~kT~~~~~t~~P~W~e~f~f~v~~-~~~~L~i~V~d~~~~~~d~~iG 171 (249)
.|.|+|++|++|+..+.. .+||||+++++++.++|++++++.||.|||.|.|.+.. ....|.|+|||++. +++||
T Consensus 1 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~---~~~iG 77 (105)
T cd04050 1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT---GKSLG 77 (105)
T ss_pred CEEEEEeeecCCCCcccCCCCCcEEEEEECCEEEeCccccCCCCCcccceEEEEeCCCCCCEEEEEEEECCC---CCccE
Confidence 389999999999988765 89999999999999999999999999999999999987 45689999999886 78999
Q ss_pred EEEEechhhhhhhhhcCCCCCcCCeeeeeeEecCC
Q 025708 172 EAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDD 206 (249)
Q Consensus 172 ~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~~~ 206 (249)
++.++|.++.... +...+.||+|.+
T Consensus 78 ~~~i~l~~l~~~~----------~~~~~~w~~L~~ 102 (105)
T cd04050 78 SLTLPLSELLKEP----------DLTLDQPFPLDN 102 (105)
T ss_pred EEEEEHHHhhccc----------cceeeeeEecCC
Confidence 9999999996431 345789998654
No 44
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.82 E-value=2.3e-19 Score=135.57 Aligned_cols=110 Identities=23% Similarity=0.333 Sum_probs=90.3
Q ss_pred ccccceeeeEEEEEEEEeecCCCCCC--CCCCcEEEEEEC---CeEEeeeeecCcCCceeeeeEEEE-eeC---CCccEE
Q 025708 85 DVGMVEFIGLLKVKVVKGINLAIRDM--MSSDPYVVLRLG---QQTVQTTIVKSNLNPVWNEELMLS-VPQ---EYGPVK 155 (249)
Q Consensus 85 ~~~~~~~~g~L~V~v~~a~~L~~~~~--~~~dpyv~v~l~---~~~~kT~~~~~t~~P~W~e~f~f~-v~~---~~~~L~ 155 (249)
++.|....+.|+|+|++|++|+..+. +.+||||++.+. .++.||++++++.||.|||+|.|. +.. ....|.
T Consensus 8 ~l~y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~ 87 (128)
T cd08388 8 SLRYNSEKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLH 87 (128)
T ss_pred EEEEECCCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEE
Confidence 34566677899999999999998775 378999999984 345799999999999999999994 543 335799
Q ss_pred EEEEecCCCCCCCeeEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEec
Q 025708 156 LEVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKS 204 (249)
Q Consensus 156 i~V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~ 204 (249)
|+|||++.++++++||++.++|.++-. .++..+..|+++
T Consensus 88 ~~V~d~d~~~~d~~lG~~~i~L~~l~~----------~~~~~~~~~~~~ 126 (128)
T cd08388 88 FAVLSFDRYSRDDVIGEVVCPLAGADL----------LNEGELLVSREI 126 (128)
T ss_pred EEEEEcCCCCCCceeEEEEEeccccCC----------CCCceEEEEEec
Confidence 999999999999999999999998832 234457788764
No 45
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.82 E-value=4.7e-19 Score=131.72 Aligned_cols=101 Identities=23% Similarity=0.365 Sum_probs=86.3
Q ss_pred eEEEEEEEEeecCCCCCCCCCCcEEEEEECCeEEeeeeecCcCCceeeeeEEEEeeCCCccEEEEEEecCCCCCCCeeEE
Q 025708 93 GLLKVKVVKGINLAIRDMMSSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDTFSADDIMGE 172 (249)
Q Consensus 93 g~L~V~v~~a~~L~~~~~~~~dpyv~v~l~~~~~kT~~~~~t~~P~W~e~f~f~v~~~~~~L~i~V~d~~~~~~d~~iG~ 172 (249)
+.|.|.|++|++|+..+ ..||||++.+++++.+|++.++ .||.|||.|.|.+......|.|+|||++.+ .||+||+
T Consensus 2 ~~L~V~Vv~Ar~L~~~~--~~dPYV~Ik~g~~k~kT~v~~~-~nP~WnE~F~F~~~~~~~~L~v~V~dkd~~-~DD~lG~ 77 (127)
T cd08394 2 SLLCVLVKKAKLDGAPD--KFNTYVTLKVQNVKSTTIAVRG-SQPCWEQDFMFEINRLDLGLVIELWNKGLI-WDTLVGT 77 (127)
T ss_pred ceEEEEEEEeeCCCCCC--CCCCeEEEEECCEEeEeeECCC-CCCceeeEEEEEEcCCCCEEEEEEEeCCCc-CCCceEE
Confidence 68999999999997655 4599999999999999999988 599999999999987666799999999975 8999999
Q ss_pred EEEechhhhhhhhhcCCCCCcCCeeeeeeEecCCC
Q 025708 173 AEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDN 207 (249)
Q Consensus 173 ~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~~~~ 207 (249)
+.|+|.++..+.. .....||+|...
T Consensus 78 v~i~L~~v~~~~~----------~~~~~Wy~L~~~ 102 (127)
T cd08394 78 VWIPLSTIRQSNE----------EGPGEWLTLDSE 102 (127)
T ss_pred EEEEhHHcccCCC----------CCCCccEecChH
Confidence 9999999865521 234689997654
No 46
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.82 E-value=6e-19 Score=132.92 Aligned_cols=88 Identities=22% Similarity=0.484 Sum_probs=80.7
Q ss_pred eeEEEEEEEEeecCCCCCCC-CCCcEEEEEECCeEEeeeeecCcCCceeeeeEEEEeeCCCccEEEEEEecCCCCCCCee
Q 025708 92 IGLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDTFSADDIM 170 (249)
Q Consensus 92 ~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~~~~kT~~~~~t~~P~W~e~f~f~v~~~~~~L~i~V~d~~~~~~d~~i 170 (249)
...|+|+|++|++|+..+.. .+||||++.++++.++|++++++.+|.|||.|.|.+......|.|+|||++.+ .|++|
T Consensus 2 ~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~i~V~d~~~~-~d~~l 80 (126)
T cd04046 2 QVVTQVHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKPRSPIKIQVWNSNLL-CDEFL 80 (126)
T ss_pred cEEEEEEEEeCcCCCCCCCCCCcCccEEEEECCEEEEeCccCCCCCCcccceEEEEecCCCCEEEEEEEECCCC-CCCce
Confidence 46899999999999988765 89999999999999999999999999999999999877777899999999987 58999
Q ss_pred EEEEEechhh
Q 025708 171 GEAEIDIQPL 180 (249)
Q Consensus 171 G~~~i~l~~l 180 (249)
|.+.+++.++
T Consensus 81 G~~~~~l~~~ 90 (126)
T cd04046 81 GQATLSADPN 90 (126)
T ss_pred EEEEEecccC
Confidence 9999999875
No 47
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.82 E-value=1.7e-19 Score=134.50 Aligned_cols=101 Identities=17% Similarity=0.305 Sum_probs=85.3
Q ss_pred eeeEEEEEEEEeecCCCCCCCCCCcEEEEEECC-----eEEeeeeecCcCCceeeeeEEEEeeC--CCccEEEEEEecCC
Q 025708 91 FIGLLKVKVVKGINLAIRDMMSSDPYVVLRLGQ-----QTVQTTIVKSNLNPVWNEELMLSVPQ--EYGPVKLEVFDHDT 163 (249)
Q Consensus 91 ~~g~L~V~v~~a~~L~~~~~~~~dpyv~v~l~~-----~~~kT~~~~~t~~P~W~e~f~f~v~~--~~~~L~i~V~d~~~ 163 (249)
..+.|.|+|++|+||+.++.+.+||||++++.+ .+++|++++++.||.|||+|.|.+.. ....|.|+|||++.
T Consensus 10 ~~~~L~V~Vi~ar~L~~~~~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~~ 89 (119)
T cd08685 10 QNRKLTLHVLEAKGLRSTNSGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNKLS 89 (119)
T ss_pred cCCEEEEEEEEEECCCCCCCCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECCCC
Confidence 468899999999999998855899999999953 35799999999999999999999866 23568999999998
Q ss_pred CC-CCCeeEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEe
Q 025708 164 FS-ADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLK 203 (249)
Q Consensus 164 ~~-~d~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~ 203 (249)
.. ++++||++.|+|.++..+ ....+||.
T Consensus 90 ~~~~~~~lG~~~i~l~~~~~~------------~~~~~Wy~ 118 (119)
T cd08685 90 KSRDSGLLGCMSFGVKSIVNQ------------KEISGWYY 118 (119)
T ss_pred CcCCCEEEEEEEecHHHhccC------------ccccceEe
Confidence 75 478999999999999532 34678886
No 48
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.81 E-value=1.9e-19 Score=135.19 Aligned_cols=108 Identities=27% Similarity=0.450 Sum_probs=91.6
Q ss_pred ccccceeeeEEEEEEEEeecCCCCCCC-CCCcEEEEEECC---eEEeeeeecCcCCceeeeeEEEEeeC---CCccEEEE
Q 025708 85 DVGMVEFIGLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQ---QTVQTTIVKSNLNPVWNEELMLSVPQ---EYGPVKLE 157 (249)
Q Consensus 85 ~~~~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~---~~~kT~~~~~t~~P~W~e~f~f~v~~---~~~~L~i~ 157 (249)
++.|....+.|+|+|++|++|+..+.. .+||||++.+.+ ..++|++++++.||.|||+|.|.+.. ....|.|+
T Consensus 8 ~l~y~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~ 87 (124)
T cd08385 8 SLDYDFQSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFS 87 (124)
T ss_pred EEEEeCCCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEE
Confidence 355667789999999999999988865 889999999843 45799999999999999999999865 24689999
Q ss_pred EEecCCCCCCCeeEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEec
Q 025708 158 VFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKS 204 (249)
Q Consensus 158 V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~ 204 (249)
|||++.++++++||++.++|.++.. +.....|+++
T Consensus 88 V~d~d~~~~~~~lG~~~i~l~~~~~------------~~~~~~W~~l 122 (124)
T cd08385 88 VYDFDRFSKHDLIGEVRVPLLTVDL------------GHVTEEWRDL 122 (124)
T ss_pred EEeCCCCCCCceeEEEEEecCcccC------------CCCcceEEEc
Confidence 9999999999999999999998843 3356788863
No 49
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.81 E-value=2.3e-19 Score=138.67 Aligned_cols=90 Identities=28% Similarity=0.461 Sum_probs=80.7
Q ss_pred EEEEEEEEeecCCCCCCC---------------CCCcEEEEEECCeEEeeeeecCcCCceeeeeEEEEeeC--CCccEEE
Q 025708 94 LLKVKVVKGINLAIRDMM---------------SSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQ--EYGPVKL 156 (249)
Q Consensus 94 ~L~V~v~~a~~L~~~~~~---------------~~dpyv~v~l~~~~~kT~~~~~t~~P~W~e~f~f~v~~--~~~~L~i 156 (249)
.|+|+|++|++|+.++.+ .+||||++.+++++.+|++++++.||+|||+|.|.+.. ....|.|
T Consensus 1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~l~~ 80 (151)
T cd04018 1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIKI 80 (151)
T ss_pred CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEeeecceEcCCCCCCcceEEEEEeeCCCcCCEEEE
Confidence 378999999999998733 47999999999999999999999999999999999753 4568999
Q ss_pred EEEecCCCCCCCeeEEEEEechhhhhh
Q 025708 157 EVFDHDTFSADDIMGEAEIDIQPLLTS 183 (249)
Q Consensus 157 ~V~d~~~~~~d~~iG~~~i~l~~l~~~ 183 (249)
+|||++..++|++||.+.++|.++...
T Consensus 81 ~v~D~d~~~~dd~iG~~~l~l~~l~~~ 107 (151)
T cd04018 81 QIRDWDRVGNDDVIGTHFIDLSKISNS 107 (151)
T ss_pred EEEECCCCCCCCEEEEEEEeHHHhccC
Confidence 999999999999999999999998654
No 50
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.81 E-value=1.8e-18 Score=130.16 Aligned_cols=88 Identities=31% Similarity=0.501 Sum_probs=78.7
Q ss_pred EEEEEEEEeecCCCCCCC-CCCcEEEEEECC---eEEeeeeecCcCCceeeeeEEEEeeC-CCccEEEEEEecCCCCCCC
Q 025708 94 LLKVKVVKGINLAIRDMM-SSDPYVVLRLGQ---QTVQTTIVKSNLNPVWNEELMLSVPQ-EYGPVKLEVFDHDTFSADD 168 (249)
Q Consensus 94 ~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~---~~~kT~~~~~t~~P~W~e~f~f~v~~-~~~~L~i~V~d~~~~~~d~ 168 (249)
.|+|+|++|++|+..+.. .+||||++.+.. ...+|++++++.+|.|||+|.|.+.. ....|.|+|||++..++++
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~~~~ 81 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSFVGKHD 81 (126)
T ss_pred EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCCCCCCc
Confidence 589999999999988876 899999999854 35799999999999999999999987 3578999999999988999
Q ss_pred eeEEEEEechhhh
Q 025708 169 IMGEAEIDIQPLL 181 (249)
Q Consensus 169 ~iG~~~i~l~~l~ 181 (249)
+||++.++|.++.
T Consensus 82 ~iG~~~i~l~~~~ 94 (126)
T cd04043 82 LCGRASLKLDPKR 94 (126)
T ss_pred eEEEEEEecCHHH
Confidence 9999999998764
No 51
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.80 E-value=8.1e-19 Score=132.39 Aligned_cols=100 Identities=29% Similarity=0.594 Sum_probs=85.7
Q ss_pred eEEEEEEEEeecCCCCCCC-CCCcEEEEEECCeEEeeeeecCcCCceeeeeEEEEeeCCCccEEEEEEecCCC-------
Q 025708 93 GLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDTF------- 164 (249)
Q Consensus 93 g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~~~~kT~~~~~t~~P~W~e~f~f~v~~~~~~L~i~V~d~~~~------- 164 (249)
..|+|+|++|++|+..+.. .+||||++.++...++|++++++.+|.|||+|.|.+......|.|+|||++..
T Consensus 1 ~~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~v~~t~~P~Wne~f~f~~~~~~~~l~i~v~d~d~~~~~~~~~ 80 (127)
T cd04027 1 AKISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNSSDRIKVRVWDEDDDIKSRLKQ 80 (127)
T ss_pred CeEEEEEEECcCCcCCCCCCCcCcEEEEEECCEeeecceecCCCCCccceEEEEEecCCCCEEEEEEEECCCCcccccce
Confidence 3689999999999998865 88999999999888999999999999999999999876557899999999852
Q ss_pred ----CCCCeeEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEecCC
Q 025708 165 ----SADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDD 206 (249)
Q Consensus 165 ----~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~~~ 206 (249)
+.+++||.+.+++.++.. ....||++..
T Consensus 81 ~~~~~~~~~iG~~~i~l~~~~~--------------~~~~w~~L~~ 112 (127)
T cd04027 81 KFTRESDDFLGQTIIEVRTLSG--------------EMDVWYNLEK 112 (127)
T ss_pred eccccCCCcceEEEEEhHHccC--------------CCCeEEECcc
Confidence 468999999999988621 2358998654
No 52
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.80 E-value=5.6e-19 Score=130.15 Aligned_cols=102 Identities=23% Similarity=0.414 Sum_probs=87.8
Q ss_pred eEEEEEEEEeecCCCCCCCCCCcEEEEEECCeEEeeeeecCcCCceeeeeEEEEeeCC-----CccEEEEEEecCCCCCC
Q 025708 93 GLLKVKVVKGINLAIRDMMSSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQE-----YGPVKLEVFDHDTFSAD 167 (249)
Q Consensus 93 g~L~V~v~~a~~L~~~~~~~~dpyv~v~l~~~~~kT~~~~~t~~P~W~e~f~f~v~~~-----~~~L~i~V~d~~~~~~d 167 (249)
-.|+|+|++|++|+ .+.+||||++++++++++|++++++.||.|||+|.|.+... ...|.|+|||++.++++
T Consensus 4 ~~l~V~v~~a~~L~---~~~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~~~~~ 80 (111)
T cd04011 4 FQVRVRVIEARQLV---GGNIDPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRSLRSD 80 (111)
T ss_pred EEEEEEEEEcccCC---CCCCCCEEEEEECCEeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCcccccC
Confidence 46899999999998 34789999999999999999999999999999999997542 35799999999999899
Q ss_pred CeeEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEecCC
Q 025708 168 DIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDD 206 (249)
Q Consensus 168 ~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~~~ 206 (249)
++||++.++|+.+..+. ....+.+||+|.+
T Consensus 81 ~~iG~~~i~l~~v~~~~---------~~~~~~~w~~L~~ 110 (111)
T cd04011 81 TLIGSFKLDVGTVYDQP---------DHAFLRKWLLLTD 110 (111)
T ss_pred CccEEEEECCccccCCC---------CCcceEEEEEeeC
Confidence 99999999999996542 2346889998654
No 53
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.80 E-value=4.7e-19 Score=133.57 Aligned_cols=108 Identities=28% Similarity=0.372 Sum_probs=90.9
Q ss_pred ccccceeeeEEEEEEEEeecCCCCCCC-CCCcEEEEEEC-----CeEEeeeeecCcCCceeeeeEEEEeeC---CCccEE
Q 025708 85 DVGMVEFIGLLKVKVVKGINLAIRDMM-SSDPYVVLRLG-----QQTVQTTIVKSNLNPVWNEELMLSVPQ---EYGPVK 155 (249)
Q Consensus 85 ~~~~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~-----~~~~kT~~~~~t~~P~W~e~f~f~v~~---~~~~L~ 155 (249)
++.|....+.|+|+|++|++|+..+.. .+||||++.+. ..+++|++++++.||.|||+|.|.+.. ....|.
T Consensus 8 ~l~y~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~ 87 (127)
T cd04030 8 TIRYSSQRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLD 87 (127)
T ss_pred EEEEeCCCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHhcCCEEE
Confidence 345666679999999999999998875 89999999994 356899999999999999999999865 246899
Q ss_pred EEEEecCCC--CCCCeeEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEec
Q 025708 156 LEVFDHDTF--SADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKS 204 (249)
Q Consensus 156 i~V~d~~~~--~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~ 204 (249)
|.|||++.+ +++++||++.++|.++..+ .....||+|
T Consensus 88 i~v~~~~~~~~~~~~~iG~~~i~l~~l~~~------------~~~~~W~~L 126 (127)
T cd04030 88 VAVKNSKSFLSREKKLLGQVLIDLSDLDLS------------KGFTQWYDL 126 (127)
T ss_pred EEEEECCcccCCCCceEEEEEEeccccccc------------CCccceEEC
Confidence 999999875 6899999999999998432 345788874
No 54
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.80 E-value=4.5e-19 Score=133.27 Aligned_cols=96 Identities=28% Similarity=0.387 Sum_probs=84.0
Q ss_pred ccccceeeeEEEEEEEEeecCCCCCCC-CCCcEEEEEECC-----eEEeeeeecCcCCceeeeeEEEEeeC----CCccE
Q 025708 85 DVGMVEFIGLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQ-----QTVQTTIVKSNLNPVWNEELMLSVPQ----EYGPV 154 (249)
Q Consensus 85 ~~~~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~-----~~~kT~~~~~t~~P~W~e~f~f~v~~----~~~~L 154 (249)
++.+....+.|+|+|++|++|+..+.. .+||||++.+.. .+++|++++++.||+|||+|.|.+.. ....|
T Consensus 8 ~l~~~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l 87 (125)
T cd04031 8 QLWYDKVTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTL 87 (125)
T ss_pred EEEEeCCCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhCCCEE
Confidence 355667789999999999999998875 899999999954 46799999999999999999998643 34689
Q ss_pred EEEEEecCCCCCCCeeEEEEEechhh
Q 025708 155 KLEVFDHDTFSADDIMGEAEIDIQPL 180 (249)
Q Consensus 155 ~i~V~d~~~~~~d~~iG~~~i~l~~l 180 (249)
.|+|||++.++.+++||++.++|.+.
T Consensus 88 ~~~V~d~~~~~~~~~iG~~~i~l~~~ 113 (125)
T cd04031 88 EVTVWDYDRDGENDFLGEVVIDLADA 113 (125)
T ss_pred EEEEEeCCCCCCCcEeeEEEEecccc
Confidence 99999999998999999999999983
No 55
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.80 E-value=1.9e-18 Score=129.61 Aligned_cols=88 Identities=30% Similarity=0.545 Sum_probs=79.3
Q ss_pred EEEEEEEeecCCCCCCC-CCCcEEEEEEC-CeEEeeeeecCcCCceeeeeEEEEeeCCCccEEEEEEecCCCCC--CCee
Q 025708 95 LKVKVVKGINLAIRDMM-SSDPYVVLRLG-QQTVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDTFSA--DDIM 170 (249)
Q Consensus 95 L~V~v~~a~~L~~~~~~-~~dpyv~v~l~-~~~~kT~~~~~t~~P~W~e~f~f~v~~~~~~L~i~V~d~~~~~~--d~~i 170 (249)
|+|+|++|++|+..+.. .+||||+++++ .+.++|++++++.||.|||+|.|.+.. ...|.|+|||++.++. |++|
T Consensus 2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~-~~~l~i~V~d~~~~~~~~d~~l 80 (123)
T cd08382 2 VRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGP-SSIITIQVFDQKKFKKKDQGFL 80 (123)
T ss_pred eEEEEEEecCCCccCCCCCCCcEEEEEECCccceEccEEcCCCCCcccceEEEEeCC-CCEEEEEEEECCCCCCCCCceE
Confidence 78999999999988865 89999999996 667899999999999999999999976 5799999999998875 5799
Q ss_pred EEEEEechhhhhh
Q 025708 171 GEAEIDIQPLLTS 183 (249)
Q Consensus 171 G~~~i~l~~l~~~ 183 (249)
|.+.+++.++...
T Consensus 81 G~~~i~l~~l~~~ 93 (123)
T cd08382 81 GCVRIRANAVLPL 93 (123)
T ss_pred eEEEEEHHHcccc
Confidence 9999999999643
No 56
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.80 E-value=6e-19 Score=132.21 Aligned_cols=108 Identities=30% Similarity=0.452 Sum_probs=90.7
Q ss_pred ccccceeeeEEEEEEEEeecCCCCC-CC-CCCcEEEEEECC-----eEEeeeeecCcCCceeeeeEEEEeeC---CCccE
Q 025708 85 DVGMVEFIGLLKVKVVKGINLAIRD-MM-SSDPYVVLRLGQ-----QTVQTTIVKSNLNPVWNEELMLSVPQ---EYGPV 154 (249)
Q Consensus 85 ~~~~~~~~g~L~V~v~~a~~L~~~~-~~-~~dpyv~v~l~~-----~~~kT~~~~~t~~P~W~e~f~f~v~~---~~~~L 154 (249)
++.|....+.|+|+|++|++|+..+ .. .+||||++++.+ .+.+|++++++.+|.|||+|.|.+.. ....|
T Consensus 6 ~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l 85 (123)
T cd08521 6 SLSYNYKTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTL 85 (123)
T ss_pred EEEEeCCCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHhCCCEE
Confidence 3556677899999999999999888 44 899999999832 45799999999999999999999876 24689
Q ss_pred EEEEEecCCCCCCCeeEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEec
Q 025708 155 KLEVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKS 204 (249)
Q Consensus 155 ~i~V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~ 204 (249)
.|+|||++.++++++||++.++|.++..+ ...+.||+|
T Consensus 86 ~i~v~d~~~~~~~~~iG~~~i~l~~l~~~------------~~~~~w~~l 123 (123)
T cd08521 86 QLSVWHHDRFGRNTFLGEVEIPLDSWDLD------------SQQSEWYPL 123 (123)
T ss_pred EEEEEeCCCCcCCceeeEEEEeccccccc------------CCCccEEEC
Confidence 99999999999999999999999998422 235788873
No 57
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.80 E-value=3.5e-19 Score=136.14 Aligned_cols=120 Identities=18% Similarity=0.312 Sum_probs=98.4
Q ss_pred cccccceeeeEEEEEEEEeecCCCCCCC-CCCcEEEEEECC------eEEeeeeecCcCCceeeeeEEEEeeC---CCcc
Q 025708 84 KDVGMVEFIGLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQ------QTVQTTIVKSNLNPVWNEELMLSVPQ---EYGP 153 (249)
Q Consensus 84 ~~~~~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~------~~~kT~~~~~t~~P~W~e~f~f~v~~---~~~~ 153 (249)
.++.|....++|.|+|++|+||+..+.. .+||||++.+.. .+++|++++++.||+|||+|.|.++. ....
T Consensus 6 ~sL~Y~~~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~~~ 85 (138)
T cd08408 6 LGLEYNALTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQLSEVT 85 (138)
T ss_pred EEeEEcCCCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHhCccE
Confidence 3567888899999999999999998776 899999999942 24699999999999999999999976 4568
Q ss_pred EEEEEEecCCCCCCCeeEEEEEechhhhhh-hhhcCCCCCcCCeeeeeeEe
Q 025708 154 VKLEVFDHDTFSADDIMGEAEIDIQPLLTS-ALAFGDPEMFGNMQIGKWLK 203 (249)
Q Consensus 154 L~i~V~d~~~~~~d~~iG~~~i~l~~l~~~-~~~~~~~~~~~~~~~~~w~~ 203 (249)
|.|+|||++.++++++||++.+++.....+ ..++.......+..+..|..
T Consensus 86 L~~~V~~~~~~~~~~~iG~v~l~~~~~~~~~~~hW~~~l~~~~~~v~~WH~ 136 (138)
T cd08408 86 LMFSVYNKRKMKRKEMIGWFSLGLNSSGEEEEEHWNEMKESKGQQVCRWHT 136 (138)
T ss_pred EEEEEEECCCCCCCcEEEEEEECCcCCCchHHHHHHHHHhCCCCEEeEeee
Confidence 999999999999999999999999866432 23343344456778888865
No 58
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.80 E-value=3.5e-18 Score=130.88 Aligned_cols=130 Identities=15% Similarity=0.188 Sum_probs=100.7
Q ss_pred eeeeEEEEEEEEeecCCCCCCCCCCcEEEEEECCeE-EeeeeecCcCCceeeeeEEEEeeCCCccEEEEEEecCC-CC--
Q 025708 90 EFIGLLKVKVVKGINLAIRDMMSSDPYVVLRLGQQT-VQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDT-FS-- 165 (249)
Q Consensus 90 ~~~g~L~V~v~~a~~L~~~~~~~~dpyv~v~l~~~~-~kT~~~~~t~~P~W~e~f~f~v~~~~~~L~i~V~d~~~-~~-- 165 (249)
.....|.|.|++|++|+.++ +|||.+.+++.. .||+++.++.||.|+|+|.|.+......|.|.||+.+. .+
T Consensus 8 R~~~sL~v~V~EAk~Lp~~~----~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~~~~~~~~l~v~v~k~~~~~~~~ 83 (146)
T cd04013 8 RTENSLKLWIIEAKGLPPKK----RYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFSNLPPVSVITVNLYRESDKKKKK 83 (146)
T ss_pred EEEEEEEEEEEEccCCCCcC----CceEEEEECCEEEEEEEEEcCCCCCcceeeEEecCCCcccEEEEEEEEccCccccc
Confidence 45688999999999999866 899999999987 59999999999999999999876656789999986543 22
Q ss_pred -CCCeeEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEecCCCccccCCceeeeCCeEEEEEEEEeccccCceEEEEEEE
Q 025708 166 -ADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVESGELELELEW 244 (249)
Q Consensus 166 -~d~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~g~~~~~~~l~l~~~~~G~i~l~l~~ 244 (249)
.+++||.+.|+++.+. .+..+++||++.+..-..... -.-.....++|||+++|
T Consensus 84 ~~~~~IG~V~Ip~~~l~------------~~~~ve~Wfpl~~~~~~~~~~-------------~~~~~~~~~~lrik~rf 138 (146)
T cd04013 84 DKSQLIGTVNIPVTDVS------------SRQFVEKWYPVSTPKGNGKSG-------------GKEGKGESPSIRIKARY 138 (146)
T ss_pred cCCcEEEEEEEEHHHhc------------CCCcccEEEEeecCCCCCccc-------------cccccCCCCEEEEEEEE
Confidence 5789999999999994 345688999976542111000 00112345899999999
Q ss_pred EeCC
Q 025708 245 MPLD 248 (249)
Q Consensus 245 ~~~~ 248 (249)
.++.
T Consensus 139 ~~~~ 142 (146)
T cd04013 139 QSTR 142 (146)
T ss_pred EEee
Confidence 9874
No 59
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.80 E-value=3.8e-19 Score=135.75 Aligned_cols=119 Identities=29% Similarity=0.376 Sum_probs=94.4
Q ss_pred ccccceeeeEEEEEEEEeecCCCCCCC-CCCcEEEEEECC-----eEEeeeeecCcCCceeeeeEEEEeeCC---CccEE
Q 025708 85 DVGMVEFIGLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQ-----QTVQTTIVKSNLNPVWNEELMLSVPQE---YGPVK 155 (249)
Q Consensus 85 ~~~~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~-----~~~kT~~~~~t~~P~W~e~f~f~v~~~---~~~L~ 155 (249)
++.|....|.|.|.|++|++|+..+.. .+||||++.+.. ..++|++++++.||.|||+|.|.+... ...|.
T Consensus 7 ~l~y~~~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~ 86 (136)
T cd08402 7 SLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKVHLI 86 (136)
T ss_pred EeEEcCCCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHhCCCEEE
Confidence 466778889999999999999988775 899999999842 357899999999999999999998652 34799
Q ss_pred EEEEecCCCCCCCeeEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEe
Q 025708 156 LEVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLK 203 (249)
Q Consensus 156 i~V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~ 203 (249)
|+|||++.+++|++||.+.+++.....+..++......++.++..|-.
T Consensus 87 ~~v~d~~~~~~~~~iG~~~i~~~~~~~~~~~W~~~~~~~~~~~~~wh~ 134 (136)
T cd08402 87 VTVLDYDRIGKNDPIGKVVLGCNATGAELRHWSDMLASPRRPIAQWHT 134 (136)
T ss_pred EEEEeCCCCCCCceeEEEEECCccCChHHHHHHHHHhCCCCeeeEEEE
Confidence 999999999999999999999987543333333333344566666643
No 60
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.79 E-value=1.1e-18 Score=131.13 Aligned_cols=108 Identities=27% Similarity=0.450 Sum_probs=90.2
Q ss_pred ccccceeeeEEEEEEEEeecCCCCCCC-CCCcEEEEEEC---CeEEeeeeecCcCCceeeeeEEEEeeC----CCccEEE
Q 025708 85 DVGMVEFIGLLKVKVVKGINLAIRDMM-SSDPYVVLRLG---QQTVQTTIVKSNLNPVWNEELMLSVPQ----EYGPVKL 156 (249)
Q Consensus 85 ~~~~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~---~~~~kT~~~~~t~~P~W~e~f~f~v~~----~~~~L~i 156 (249)
+..|....+.|.|+|++|++|+..+.. .+||||++.+. ....+|++++++.||.|||+|.|.+.. ....|.|
T Consensus 8 ~l~y~~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~ 87 (125)
T cd08386 8 SVSYDFQESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYL 87 (125)
T ss_pred EEEECCCCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEE
Confidence 345666678999999999999988865 89999999993 456899999999999999999998533 2357999
Q ss_pred EEEecCCCCCCCeeEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEec
Q 025708 157 EVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKS 204 (249)
Q Consensus 157 ~V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~ 204 (249)
+|||++.++++++||++.++|.++.. +.....|+.|
T Consensus 88 ~v~d~d~~~~~~~iG~~~i~l~~l~~------------~~~~~~W~~l 123 (125)
T cd08386 88 QVLDYDRFSRNDPIGEVSLPLNKVDL------------TEEQTFWKDL 123 (125)
T ss_pred EEEeCCCCcCCcEeeEEEEecccccC------------CCCcceEEec
Confidence 99999999999999999999999843 2346778764
No 61
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.79 E-value=8.1e-19 Score=131.81 Aligned_cols=107 Identities=21% Similarity=0.312 Sum_probs=90.0
Q ss_pred ccccceeeeEEEEEEEEeecCCCCCCC-CCCcEEEEEEC---CeEEeeeeecCcCCceeeeeEEEE-eeC---CCccEEE
Q 025708 85 DVGMVEFIGLLKVKVVKGINLAIRDMM-SSDPYVVLRLG---QQTVQTTIVKSNLNPVWNEELMLS-VPQ---EYGPVKL 156 (249)
Q Consensus 85 ~~~~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~---~~~~kT~~~~~t~~P~W~e~f~f~-v~~---~~~~L~i 156 (249)
++.|....+.|.|+|++|+||+..+.. .+||||++.+. .++++|+++++ .||+|||+|.|. +.. ....|.|
T Consensus 8 sl~Y~~~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~ 86 (124)
T cd08389 8 AFEYDPSARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELNNMALRF 86 (124)
T ss_pred EEEECCCCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhccCEEEE
Confidence 456777789999999999999998865 78999998873 35689999888 999999999998 654 4578999
Q ss_pred EEEecCCCCCCCeeEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEec
Q 025708 157 EVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKS 204 (249)
Q Consensus 157 ~V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~ 204 (249)
+|||++.++++++||++.|+|.++.. +.....|+++
T Consensus 87 ~V~~~~~~~~~~~lG~~~i~L~~l~~------------~~~~~~w~~L 122 (124)
T cd08389 87 RLYGVERMRKERLIGEKVVPLSQLNL------------EGETTVWLTL 122 (124)
T ss_pred EEEECCCcccCceEEEEEEeccccCC------------CCCceEEEeC
Confidence 99999999999999999999999933 2346778874
No 62
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.79 E-value=1e-18 Score=128.72 Aligned_cols=90 Identities=34% Similarity=0.624 Sum_probs=80.0
Q ss_pred eEEEEEEEEeecCCCCCC--CCCCcEEEEEECC---eEEeeeeecCcCCceeeeeEEEEeeC----CCccEEEEEEecCC
Q 025708 93 GLLKVKVVKGINLAIRDM--MSSDPYVVLRLGQ---QTVQTTIVKSNLNPVWNEELMLSVPQ----EYGPVKLEVFDHDT 163 (249)
Q Consensus 93 g~L~V~v~~a~~L~~~~~--~~~dpyv~v~l~~---~~~kT~~~~~t~~P~W~e~f~f~v~~----~~~~L~i~V~d~~~ 163 (249)
|+|+|+|++|++|+..+. +.+||||++.+.. ..++|++++++.||.|||.|.|.+.. ....|.|+|||++.
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~ 80 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDR 80 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCC
Confidence 689999999999998876 3789999999843 45899999999999999999998765 24689999999999
Q ss_pred CCCCCeeEEEEEechhhhh
Q 025708 164 FSADDIMGEAEIDIQPLLT 182 (249)
Q Consensus 164 ~~~d~~iG~~~i~l~~l~~ 182 (249)
++.|++||++.+++.++..
T Consensus 81 ~~~dd~lG~~~i~l~~l~~ 99 (111)
T cd04041 81 FTADDRLGRVEIDLKELIE 99 (111)
T ss_pred CCCCCcceEEEEEHHHHhc
Confidence 9999999999999999963
No 63
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.79 E-value=4.8e-19 Score=135.22 Aligned_cols=119 Identities=24% Similarity=0.350 Sum_probs=94.0
Q ss_pred ccccceeeeEEEEEEEEeecCCCCCCC-CCCcEEEEEECC-----eEEeeeeecCcCCceeeeeEEEEeeC---CCccEE
Q 025708 85 DVGMVEFIGLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQ-----QTVQTTIVKSNLNPVWNEELMLSVPQ---EYGPVK 155 (249)
Q Consensus 85 ~~~~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~-----~~~kT~~~~~t~~P~W~e~f~f~v~~---~~~~L~ 155 (249)
++.|....+.|.|+|++|++|+..+.. .+||||++.+.. .+.+|++++++.||.|+|+|.|.+.. ....|.
T Consensus 7 ~l~y~~~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~ 86 (136)
T cd08404 7 SLCYQPTTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVE 86 (136)
T ss_pred EEEEeCCCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHhCCCEEE
Confidence 345666678999999999999998865 899999999832 24789999999999999999999875 345789
Q ss_pred EEEEecCCCCCCCeeEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEe
Q 025708 156 LEVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLK 203 (249)
Q Consensus 156 i~V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~ 203 (249)
|+|||++.++++++||++.+++.....+..++.......++.+..|-.
T Consensus 87 ~~v~d~d~~~~~~~iG~~~~~~~~~~~~~~~w~~l~~~~~~~i~~Wh~ 134 (136)
T cd08404 87 FLVLDSDRVTKNEVIGRLVLGPKASGSGGHHWKEVCNPPRRQIAEWHM 134 (136)
T ss_pred EEEEECCCCCCCccEEEEEECCcCCCchHHHHHHHHhCCCCeeeEEEe
Confidence 999999999999999999999988433333332223345667777754
No 64
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.79 E-value=3e-18 Score=128.68 Aligned_cols=102 Identities=28% Similarity=0.471 Sum_probs=88.8
Q ss_pred eEEEEEEEEeecCCCCCCC-CCCcEEEEEECCeEEeeeeecC-cCCceeeeeEEEEeeCC----CccEEEEEEecCCCCC
Q 025708 93 GLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQQTVQTTIVKS-NLNPVWNEELMLSVPQE----YGPVKLEVFDHDTFSA 166 (249)
Q Consensus 93 g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~~~~kT~~~~~-t~~P~W~e~f~f~v~~~----~~~L~i~V~d~~~~~~ 166 (249)
|.|.|+|++|++|+..+.. .+||||+++++...++|++.++ +.||.|||+|.|.+... ...|.|+|||++.++.
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~ 80 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDNFSD 80 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCCcCceEEEEECCEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECccCCC
Confidence 6899999999999988765 8999999999988899999875 89999999999999875 4689999999999989
Q ss_pred CCeeEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEecCC
Q 025708 167 DDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDD 206 (249)
Q Consensus 167 d~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~~~ 206 (249)
+++||.+.++|.++..++ ....|+++..
T Consensus 81 d~~iG~~~i~l~~l~~~~------------~~~~~~~l~p 108 (124)
T cd04049 81 DDFIGEATIHLKGLFEEG------------VEPGTAELVP 108 (124)
T ss_pred CCeEEEEEEEhHHhhhCC------------CCcCceEeec
Confidence 999999999999996543 3467777544
No 65
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.79 E-value=4.7e-19 Score=134.71 Aligned_cols=95 Identities=27% Similarity=0.405 Sum_probs=84.1
Q ss_pred ccccceeeeEEEEEEEEeecCCCCCCC-CCCcEEEEEECC-----eEEeeeeecCcCCceeeeeEEEEeeC---CCccEE
Q 025708 85 DVGMVEFIGLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQ-----QTVQTTIVKSNLNPVWNEELMLSVPQ---EYGPVK 155 (249)
Q Consensus 85 ~~~~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~-----~~~kT~~~~~t~~P~W~e~f~f~v~~---~~~~L~ 155 (249)
++.|....+.|.|+|++|++|+..+.. .+||||++.+.. .+.+|++++++.||.|||+|.|.+.. ....|.
T Consensus 5 ~l~y~~~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~ 84 (133)
T cd08384 5 SLMYNTQRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLE 84 (133)
T ss_pred EEEEcCCCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEE
Confidence 466778889999999999999998875 899999999943 35799999999999999999999865 246799
Q ss_pred EEEEecCCCCCCCeeEEEEEechh
Q 025708 156 LEVFDHDTFSADDIMGEAEIDIQP 179 (249)
Q Consensus 156 i~V~d~~~~~~d~~iG~~~i~l~~ 179 (249)
|+|||++..+++++||++.+++..
T Consensus 85 ~~V~d~d~~~~~~~lG~~~i~l~~ 108 (133)
T cd08384 85 ITVWDKDIGKSNDYIGGLQLGINA 108 (133)
T ss_pred EEEEeCCCCCCccEEEEEEEecCC
Confidence 999999998899999999999975
No 66
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.78 E-value=2.3e-18 Score=129.06 Aligned_cols=108 Identities=24% Similarity=0.331 Sum_probs=91.1
Q ss_pred ccccceeeeEEEEEEEEeecCCCCC-CC-CCCcEEEEEEC---CeEEeeeeecCcCCceeeeeEEEEeeC---CCccEEE
Q 025708 85 DVGMVEFIGLLKVKVVKGINLAIRD-MM-SSDPYVVLRLG---QQTVQTTIVKSNLNPVWNEELMLSVPQ---EYGPVKL 156 (249)
Q Consensus 85 ~~~~~~~~g~L~V~v~~a~~L~~~~-~~-~~dpyv~v~l~---~~~~kT~~~~~t~~P~W~e~f~f~v~~---~~~~L~i 156 (249)
++.|....+.|.|+|++|++|+..+ .. .+||||++++. ....+|++++++.+|.|||.|.|.+.. ....|.|
T Consensus 6 ~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i 85 (123)
T cd08390 6 SVQYDLEEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRL 85 (123)
T ss_pred EEEECCCCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEE
Confidence 4567777899999999999999987 34 88999999983 345789999999999999999999876 2457999
Q ss_pred EEEecCCCCCCCeeEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEec
Q 025708 157 EVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKS 204 (249)
Q Consensus 157 ~V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~ 204 (249)
+|||++..+++++||++.++|.++.. ......|++|
T Consensus 86 ~v~d~~~~~~~~~iG~~~i~L~~l~~------------~~~~~~w~~L 121 (123)
T cd08390 86 SVYDVDRFSRHCIIGHVLFPLKDLDL------------VKGGVVWRDL 121 (123)
T ss_pred EEEECCcCCCCcEEEEEEEeccceec------------CCCceEEEeC
Confidence 99999998889999999999999843 3345678774
No 67
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.78 E-value=1.9e-18 Score=129.96 Aligned_cols=106 Identities=19% Similarity=0.323 Sum_probs=88.3
Q ss_pred EEEEEEEEeecCCCCCCC-CCCcEEEEEECC-eEEeeeeec-CcCCceeeeeEEEEeeCC-----CccEEEEEEecCCCC
Q 025708 94 LLKVKVVKGINLAIRDMM-SSDPYVVLRLGQ-QTVQTTIVK-SNLNPVWNEELMLSVPQE-----YGPVKLEVFDHDTFS 165 (249)
Q Consensus 94 ~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~-~~~kT~~~~-~t~~P~W~e~f~f~v~~~-----~~~L~i~V~d~~~~~ 165 (249)
+|+|+|++|++|+..+.. .+||||++++++ .+++|+++. ++.||.|||.|.|.+... ...|.|+|||++.++
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~~~ 80 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERPSL 80 (125)
T ss_pred CEEEEEEEcccCCCCCcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCCCC
Confidence 489999999999988765 899999999988 788999975 589999999999999775 578999999999988
Q ss_pred CCCeeEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEecCC
Q 025708 166 ADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDD 206 (249)
Q Consensus 166 ~d~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~~~ 206 (249)
.+++||++.++|.++..+....+ .....||++..
T Consensus 81 ~~~~lG~~~i~l~~l~~~~~~~~-------~~~~~~~~l~~ 114 (125)
T cd04051 81 GDKLIGEVRVPLKDLLDGASPAG-------ELRFLSYQLRR 114 (125)
T ss_pred CCCcEEEEEEEHHHhhcccCCCC-------cceeEEEEeEC
Confidence 99999999999999976543211 23456887443
No 68
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.78 E-value=6.9e-18 Score=126.00 Aligned_cols=102 Identities=26% Similarity=0.449 Sum_probs=89.1
Q ss_pred eEEEEEEEEeecCCCCCCC-CCCcEEEEEECC-eEEeeeeecCcCCceeeeeEEEEeeCCCccEEEEEEecCCCCCCCee
Q 025708 93 GLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQ-QTVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDTFSADDIM 170 (249)
Q Consensus 93 g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~-~~~kT~~~~~t~~P~W~e~f~f~v~~~~~~L~i~V~d~~~~~~d~~i 170 (249)
|.|.|+|++|++|+..+.. .+||||++.+++ ...+|++++++.+|.|||.|.|.+......|.|+|||++.+++|++|
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~~~~L~v~v~d~~~~~~d~~I 80 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSPNQKITLEVMDYEKVGKDRSL 80 (120)
T ss_pred CeEEEEEEeeECCCCccCCCCcCCEEEEEECCEEeeceeEECCCcCCccCceEEEEecCCCCEEEEEEEECCCCCCCCee
Confidence 6899999999999998865 899999999976 45899999999999999999999877668999999999999999999
Q ss_pred EEEEEechhhhhhhhhcCCCCCcCCeeeeeeEecCCC
Q 025708 171 GEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDN 207 (249)
Q Consensus 171 G~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~~~~ 207 (249)
|++.++|.++..+ ..+.||.+.+.
T Consensus 81 G~~~~~l~~l~~~-------------~~~~~~~~~~~ 104 (120)
T cd04045 81 GSVEINVSDLIKK-------------NEDGKYVEYDD 104 (120)
T ss_pred eEEEEeHHHhhCC-------------CCCceEEecCC
Confidence 9999999999654 23678765443
No 69
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.78 E-value=1.9e-18 Score=129.83 Aligned_cols=92 Identities=26% Similarity=0.384 Sum_probs=81.1
Q ss_pred eeeeEEEEEEEEeecCCCCCCCCCCcEEEEEECCeEEeeeeecCcCCceeeeeEEEEeeC--CCccEEEEEEecCCCCCC
Q 025708 90 EFIGLLKVKVVKGINLAIRDMMSSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQ--EYGPVKLEVFDHDTFSAD 167 (249)
Q Consensus 90 ~~~g~L~V~v~~a~~L~~~~~~~~dpyv~v~l~~~~~kT~~~~~t~~P~W~e~f~f~v~~--~~~~L~i~V~d~~~~~~d 167 (249)
...+.|+|+|++|++|+....+.+||||+|.+++.+++|++++++.||+|||+|.|.... ....|.|+|||++.+++|
T Consensus 25 ~~~~~L~V~V~~A~~L~~d~~g~~DPYVkV~~~~~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~~s~d 104 (127)
T cd04032 25 RGLATLTVTVLRATGLWGDYFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRDNGWDD 104 (127)
T ss_pred CCcEEEEEEEEECCCCCcCcCCCCCeEEEEEECCccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCCCCCCC
Confidence 456899999999999985333488999999999889999999999999999999997433 467899999999999999
Q ss_pred CeeEEEEEechhhh
Q 025708 168 DIMGEAEIDIQPLL 181 (249)
Q Consensus 168 ~~iG~~~i~l~~l~ 181 (249)
++||++.++|....
T Consensus 105 d~IG~~~i~l~~~~ 118 (127)
T cd04032 105 DLLGTCSVVPEAGV 118 (127)
T ss_pred CeeEEEEEEecCCc
Confidence 99999999999764
No 70
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.78 E-value=9.6e-19 Score=133.54 Aligned_cols=119 Identities=24% Similarity=0.389 Sum_probs=94.3
Q ss_pred ccccceeeeEEEEEEEEeecCCCCCCC-CCCcEEEEEEC--C---eEEeeeeecCcCCceeeeeEEEEeeC---CCccEE
Q 025708 85 DVGMVEFIGLLKVKVVKGINLAIRDMM-SSDPYVVLRLG--Q---QTVQTTIVKSNLNPVWNEELMLSVPQ---EYGPVK 155 (249)
Q Consensus 85 ~~~~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~--~---~~~kT~~~~~t~~P~W~e~f~f~v~~---~~~~L~ 155 (249)
++.|....+.|+|+|++|++|+..+.. .+||||++.+. . .+.+|++++++.||.|||+|.|.+.. ....|.
T Consensus 7 sl~y~~~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~~~~~l~ 86 (136)
T cd08405 7 SLCYNPTANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLERLRETTLI 86 (136)
T ss_pred EEEEcCCCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHHhCCCEEE
Confidence 456777789999999999999988765 89999999983 2 34789999999999999999999864 245799
Q ss_pred EEEEecCCCCCCCeeEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEe
Q 025708 156 LEVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLK 203 (249)
Q Consensus 156 i~V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~ 203 (249)
|+|||++.++++++||++.+++........++...-...+..+.+|..
T Consensus 87 ~~v~d~~~~~~~~~lG~~~i~~~~~~~~~~~w~~~~~~~~~~~~~wh~ 134 (136)
T cd08405 87 ITVMDKDRLSRNDLIGKIYLGWKSGGLELKHWKDMLSKPRQPVAQWHR 134 (136)
T ss_pred EEEEECCCCCCCcEeEEEEECCccCCchHHHHHHHHhCCCCchhEEEe
Confidence 999999999999999999999987633333332233344566777754
No 71
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.78 E-value=2.3e-18 Score=135.09 Aligned_cols=94 Identities=28% Similarity=0.402 Sum_probs=81.6
Q ss_pred eeeeEEEEEEEEeecCCCCCCC-CCCcEEEEEEC-----CeEEeeeeecCcCCceeeeeEEEEeeC----CCccEEEEEE
Q 025708 90 EFIGLLKVKVVKGINLAIRDMM-SSDPYVVLRLG-----QQTVQTTIVKSNLNPVWNEELMLSVPQ----EYGPVKLEVF 159 (249)
Q Consensus 90 ~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~-----~~~~kT~~~~~t~~P~W~e~f~f~v~~----~~~~L~i~V~ 159 (249)
...|.|.|+|++|++|+..+.. .+||||++++. ..+++|++++++.||.|||+|.|.+.. ....|.|+||
T Consensus 24 ~~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~ 103 (162)
T cd04020 24 PSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVW 103 (162)
T ss_pred CCCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEE
Confidence 3579999999999999998865 89999999983 356899999999999999999998532 2357999999
Q ss_pred ecCCCCCCCeeEEEEEechhhhhh
Q 025708 160 DHDTFSADDIMGEAEIDIQPLLTS 183 (249)
Q Consensus 160 d~~~~~~d~~iG~~~i~l~~l~~~ 183 (249)
|++.++++++||++.+++..+...
T Consensus 104 d~d~~~~d~~lG~v~i~l~~~~~~ 127 (162)
T cd04020 104 DHDKLSSNDFLGGVRLGLGTGKSY 127 (162)
T ss_pred eCCCCCCCceEEEEEEeCCccccC
Confidence 999999999999999999998543
No 72
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.77 E-value=1.1e-17 Score=129.50 Aligned_cols=122 Identities=24% Similarity=0.437 Sum_probs=89.1
Q ss_pred EEEEEEEeec--CCCCCCC-CCCcEEEEEE-----CCeEEeeeeecCcCCceeeeeEEEEeeCC---------CccEEEE
Q 025708 95 LKVKVVKGIN--LAIRDMM-SSDPYVVLRL-----GQQTVQTTIVKSNLNPVWNEELMLSVPQE---------YGPVKLE 157 (249)
Q Consensus 95 L~V~v~~a~~--L~~~~~~-~~dpyv~v~l-----~~~~~kT~~~~~t~~P~W~e~f~f~v~~~---------~~~L~i~ 157 (249)
..++|..|++ |+..+.. .+||||++++ +.++.+|+++++|+||+|||+|.|.+... ...|.|+
T Consensus 4 ~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~ 83 (155)
T cd08690 4 IELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFE 83 (155)
T ss_pred eEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEE
Confidence 3455556665 6666644 7899999997 23579999999999999999999999653 3579999
Q ss_pred EEecCCC-CCCCeeEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEecCCCccccCCceeeeCCeEEEEEEEEeccccCc
Q 025708 158 VFDHDTF-SADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVESG 236 (249)
Q Consensus 158 V~d~~~~-~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~g~~~~~~~l~l~~~~~G 236 (249)
|||++.+ .+|++||++.++|+.+... .....|+++.++ -.-.+|++ ++.++++..-+|
T Consensus 84 V~d~~~f~~~D~~iG~~~i~L~~l~~~------------~~~~~~~~L~~~-------~k~~Gg~l--~v~ir~r~p~~~ 142 (155)
T cd08690 84 VYHKGGFLRSDKLLGTAQVKLEPLETK------------CEIHESVDLMDG-------RKATGGKL--EVKVRLREPLTG 142 (155)
T ss_pred EEeCCCcccCCCeeEEEEEEccccccc------------CcceEEEEhhhC-------CCCcCCEE--EEEEEecCCCcc
Confidence 9999986 5799999999999998433 245678886654 11234554 455555554444
Q ss_pred e
Q 025708 237 E 237 (249)
Q Consensus 237 ~ 237 (249)
+
T Consensus 143 ~ 143 (155)
T cd08690 143 K 143 (155)
T ss_pred c
Confidence 4
No 73
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.77 E-value=1.8e-18 Score=131.69 Aligned_cols=118 Identities=24% Similarity=0.383 Sum_probs=91.4
Q ss_pred ccccceeeeEEEEEEEEeecCCCCCCC-CCCcEEEEEECC-----eEEeeeeecCcCCceeeeeEEEEeeC---CCccEE
Q 025708 85 DVGMVEFIGLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQ-----QTVQTTIVKSNLNPVWNEELMLSVPQ---EYGPVK 155 (249)
Q Consensus 85 ~~~~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~-----~~~kT~~~~~t~~P~W~e~f~f~v~~---~~~~L~ 155 (249)
++.|....+.|+|+|++|++|+..+.. .+||||++.+.. ...+|++++++.||.|||+|.|.+.. ....|.
T Consensus 6 ~~~y~~~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~ 85 (134)
T cd08403 6 SLCYLPTAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSLI 85 (134)
T ss_pred EEEEcCCCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhCCCEEE
Confidence 456777789999999999999998875 899999999842 25789999999999999999999865 234699
Q ss_pred EEEEecCCCCCCCeeEEEEEechhhhhhhhhcCCCCCcCCeeeeeeE
Q 025708 156 LEVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWL 202 (249)
Q Consensus 156 i~V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~ 202 (249)
|+|||++.++++++||++.+++.....+..++.......+..+..|-
T Consensus 86 ~~v~d~~~~~~~~~IG~~~l~~~~~~~~~~~w~~~~~~~~~~~~~wh 132 (134)
T cd08403 86 IAVVDYDRVGHNELIGVCRVGPNADGQGREHWNEMLANPRKPIAQWH 132 (134)
T ss_pred EEEEECCCCCCCceeEEEEECCCCCCchHHHHHHHHHCCCCeeeEee
Confidence 99999999999999999999987443333222222234455566663
No 74
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.77 E-value=1e-17 Score=123.47 Aligned_cols=98 Identities=23% Similarity=0.432 Sum_probs=82.9
Q ss_pred CCCcEEEEEECCe-EEeeeeecCcCCceeeeeEEEEeeC-CCccEEEEEEecCCCCCCCeeEEEEEechhhhhhhhhcCC
Q 025708 112 SSDPYVVLRLGQQ-TVQTTIVKSNLNPVWNEELMLSVPQ-EYGPVKLEVFDHDTFSADDIMGEAEIDIQPLLTSALAFGD 189 (249)
Q Consensus 112 ~~dpyv~v~l~~~-~~kT~~~~~t~~P~W~e~f~f~v~~-~~~~L~i~V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~ 189 (249)
.+||||++.++++ ..+|++++++.||.|||.|.|.+.. ....|.|.|||++.+ .+++||++.++|.++....
T Consensus 12 ~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~-~d~~iG~~~v~L~~l~~~~----- 85 (111)
T cd04052 12 LLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDR-HDPVLGSVSISLNDLIDAT----- 85 (111)
T ss_pred CCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCC-CCCeEEEEEecHHHHHhhh-----
Confidence 6899999999875 5799999999999999999999976 456799999999998 8999999999999996532
Q ss_pred CCCcCCeeeeeeEecCCCccccCCceeeeCCeEEEEEEEEeccccCceEEEEEEEEeC
Q 025708 190 PEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVESGELELELEWMPL 247 (249)
Q Consensus 190 ~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~g~~~~~~~l~l~~~~~G~i~l~l~~~~~ 247 (249)
.....||+ |.+.+.|+|+|+++|.|+
T Consensus 86 ------~~~~~w~~--------------------------L~~~~~G~i~~~~~~~p~ 111 (111)
T cd04052 86 ------SVGQQWFP--------------------------LSGNGQGRIRISALWKPV 111 (111)
T ss_pred ------hccceeEE--------------------------CCCCCCCEEEEEEEEecC
Confidence 12356776 444578999999999985
No 75
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.76 E-value=3.1e-18 Score=130.86 Aligned_cols=119 Identities=18% Similarity=0.236 Sum_probs=94.1
Q ss_pred ccccceeeeEEEEEEEEeecCCCCCCCCCCcEEEEEECC-----eEEeeeeecCcCCceeeeeEEEEeeC---CCccEEE
Q 025708 85 DVGMVEFIGLLKVKVVKGINLAIRDMMSSDPYVVLRLGQ-----QTVQTTIVKSNLNPVWNEELMLSVPQ---EYGPVKL 156 (249)
Q Consensus 85 ~~~~~~~~g~L~V~v~~a~~L~~~~~~~~dpyv~v~l~~-----~~~kT~~~~~t~~P~W~e~f~f~v~~---~~~~L~i 156 (249)
++.|....+.|.|.|++|+||+..+.+.+||||++.+.. .+++|++++++.||+|||.|.|.++. ....|.|
T Consensus 7 sl~y~~~~~~L~V~V~~a~nL~~~~~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~ 86 (137)
T cd08409 7 SLTYNPTLNRLTVVVLRARGLRQLDHAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSL 86 (137)
T ss_pred EEEECCCCCeEEEEEEEecCCCcccCCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHhCccEEEE
Confidence 455667789999999999999988844899999999843 35789999999999999999999975 3468999
Q ss_pred EEEecCCCCCCCeeEEEEEechhhh--hhhhhcCCCCCcCCeeeeeeEe
Q 025708 157 EVFDHDTFSADDIMGEAEIDIQPLL--TSALAFGDPEMFGNMQIGKWLK 203 (249)
Q Consensus 157 ~V~d~~~~~~d~~iG~~~i~l~~l~--~~~~~~~~~~~~~~~~~~~w~~ 203 (249)
+|||++..+++++||++.++..... .+..++..+....+..+..|-.
T Consensus 87 ~V~~~~~~~~~~~lG~v~ig~~~~~~~~~~~hW~~~~~~p~~~i~~WH~ 135 (137)
T cd08409 87 SVMQSGGVRKSKLLGRVVLGPFMYARGKELEHWNDMLSKPKELIKRWHA 135 (137)
T ss_pred EEEeCCCCCCcceEEEEEECCcccCCChHHHHHHHHHhCCCCceeEEEe
Confidence 9999999899999999999865443 2233333333445677777764
No 76
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.76 E-value=3.1e-18 Score=130.57 Aligned_cols=96 Identities=27% Similarity=0.493 Sum_probs=81.7
Q ss_pred ccccceeeeEEEEEEEEeecCCCCCCC-CCCcEEEEEECC-----eEEeeeeecCcCCceeeeeEEEEeeC---CCccEE
Q 025708 85 DVGMVEFIGLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQ-----QTVQTTIVKSNLNPVWNEELMLSVPQ---EYGPVK 155 (249)
Q Consensus 85 ~~~~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~-----~~~kT~~~~~t~~P~W~e~f~f~v~~---~~~~L~ 155 (249)
++.|....+.|+|+|++|++|+..+.. .+||||++++.. .+++|++++++.||.|||+|.|.+.. ....|.
T Consensus 6 ~l~y~~~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~ 85 (135)
T cd08410 6 SLNYLPSAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELENVSLV 85 (135)
T ss_pred EEEECCCCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhCCCEEE
Confidence 456777789999999999999998875 899999999832 34789999999999999999999865 234699
Q ss_pred EEEEecCCCCCCCeeEEEEEechhh
Q 025708 156 LEVFDHDTFSADDIMGEAEIDIQPL 180 (249)
Q Consensus 156 i~V~d~~~~~~d~~iG~~~i~l~~l 180 (249)
|+|||++..+++++||++.|.....
T Consensus 86 ~~V~d~d~~~~~~~iG~~~l~~~~~ 110 (135)
T cd08410 86 FTVYGHNVKSSNDFIGRIVIGQYSS 110 (135)
T ss_pred EEEEeCCCCCCCcEEEEEEEcCccC
Confidence 9999999999999999998776443
No 77
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.76 E-value=5.7e-18 Score=128.80 Aligned_cols=97 Identities=28% Similarity=0.339 Sum_probs=84.5
Q ss_pred cccceeeeEEEEEEEEeecCCCCCCC-CCCcEEEEEEC-------CeEEeeeeecCcCCceeeeeEEEEeeC-----CCc
Q 025708 86 VGMVEFIGLLKVKVVKGINLAIRDMM-SSDPYVVLRLG-------QQTVQTTIVKSNLNPVWNEELMLSVPQ-----EYG 152 (249)
Q Consensus 86 ~~~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~-------~~~~kT~~~~~t~~P~W~e~f~f~v~~-----~~~ 152 (249)
+.+....+.|+|.|++|++|+..+.. .+||||++++. ...++|++++++.||+|||+|.|.+.. ...
T Consensus 9 l~y~~~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~ 88 (133)
T cd04009 9 AYYRASEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGA 88 (133)
T ss_pred EEEcCCCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCC
Confidence 44555678999999999999988765 89999999985 246899999999999999999999865 245
Q ss_pred cEEEEEEecCCCCCCCeeEEEEEechhhhh
Q 025708 153 PVKLEVFDHDTFSADDIMGEAEIDIQPLLT 182 (249)
Q Consensus 153 ~L~i~V~d~~~~~~d~~iG~~~i~l~~l~~ 182 (249)
.|.|+|||++.++++++||++.++|.++..
T Consensus 89 ~l~~~V~d~d~~~~d~~iG~~~i~l~~l~~ 118 (133)
T cd04009 89 LLLFTVKDYDLLGSNDFEGEAFLPLNDIPG 118 (133)
T ss_pred EEEEEEEecCCCCCCcEeEEEEEeHHHCCc
Confidence 799999999999889999999999999963
No 78
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.75 E-value=2.8e-17 Score=121.68 Aligned_cols=100 Identities=36% Similarity=0.530 Sum_probs=85.7
Q ss_pred EEEEEEEeecCCCCCCC-CCCcEEEEEECC-eEEeeeeecCcCCceeeeeEEEEeeC-CCccEEEEEEecCCCCCCCeeE
Q 025708 95 LKVKVVKGINLAIRDMM-SSDPYVVLRLGQ-QTVQTTIVKSNLNPVWNEELMLSVPQ-EYGPVKLEVFDHDTFSADDIMG 171 (249)
Q Consensus 95 L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~-~~~kT~~~~~t~~P~W~e~f~f~v~~-~~~~L~i~V~d~~~~~~d~~iG 171 (249)
|+|.|++|++|+..+.. .+||||++.+++ ..++|+++.++.+|.|||+|.|.+.. ....|.|+|||++..+++++||
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~~~~~iG 80 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGGKDDLLG 80 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCCCCCceE
Confidence 57999999999988765 789999999965 44799999999999999999999876 4678999999999988999999
Q ss_pred EEEEechhhhhhhhhcCCCCCcCCeeeeeeEecCC
Q 025708 172 EAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDD 206 (249)
Q Consensus 172 ~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~~~ 206 (249)
++.+++.++.. +.....|+++..
T Consensus 81 ~~~~~l~~l~~------------~~~~~~~~~L~~ 103 (115)
T cd04040 81 SAYIDLSDLEP------------EETTELTLPLDG 103 (115)
T ss_pred EEEEEHHHcCC------------CCcEEEEEECcC
Confidence 99999999843 334677777544
No 79
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.75 E-value=1.2e-17 Score=129.23 Aligned_cols=90 Identities=33% Similarity=0.543 Sum_probs=79.3
Q ss_pred cceeeeEEEEEEEEeecCCCCCCC-CCCcEEEEEECC-----------------------------eEEeeeeecCcCCc
Q 025708 88 MVEFIGLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQ-----------------------------QTVQTTIVKSNLNP 137 (249)
Q Consensus 88 ~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~-----------------------------~~~kT~~~~~t~~P 137 (249)
..++.+.|.|+|++|++|+..+.. .+||||++.+.. ...+|++++++.+|
T Consensus 23 ~~~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP 102 (153)
T cd08676 23 AEPPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNP 102 (153)
T ss_pred cCCCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCC
Confidence 445689999999999999998875 899999999853 13689999999999
Q ss_pred eeeeeEEEEeeC-CCccEEEEEEecCCCCCCCeeEEEEEechhhh
Q 025708 138 VWNEELMLSVPQ-EYGPVKLEVFDHDTFSADDIMGEAEIDIQPLL 181 (249)
Q Consensus 138 ~W~e~f~f~v~~-~~~~L~i~V~d~~~~~~d~~iG~~~i~l~~l~ 181 (249)
.|||+|.|.+.. ....|.|+|||++ +++||++.+++.++.
T Consensus 103 ~WnE~F~f~v~~~~~~~L~i~V~D~d----d~~IG~v~i~l~~l~ 143 (153)
T cd08676 103 VWNETFRFEVEDVSNDQLHLDIWDHD----DDFLGCVNIPLKDLP 143 (153)
T ss_pred ccccEEEEEeccCCCCEEEEEEEecC----CCeEEEEEEEHHHhC
Confidence 999999999976 4578999999997 789999999999995
No 80
>PLN03008 Phospholipase D delta
Probab=99.75 E-value=1.8e-17 Score=154.69 Aligned_cols=130 Identities=26% Similarity=0.544 Sum_probs=104.7
Q ss_pred cccceeeeEEEEEEEEeecCCCCC-------------------------------------------CCCCCcEEEEEEC
Q 025708 86 VGMVEFIGLLKVKVVKGINLAIRD-------------------------------------------MMSSDPYVVLRLG 122 (249)
Q Consensus 86 ~~~~~~~g~L~V~v~~a~~L~~~~-------------------------------------------~~~~dpyv~v~l~ 122 (249)
....-.-|.|.|+|.+|++|+.++ ..++||||+|.++
T Consensus 7 ~~~~llhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~Lg 86 (868)
T PLN03008 7 EDVMLLHGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVVVP 86 (868)
T ss_pred cceEEeecccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEEEC
Confidence 334445699999999999988521 1156999999998
Q ss_pred CeE-EeeeeecCcCCceeeeeEEEEeeCCCccEEEEEEecCCCCCCCeeEEEEEechhhhhhhhhcCCCCCcCCeeeeee
Q 025708 123 QQT-VQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKW 201 (249)
Q Consensus 123 ~~~-~kT~~~~~t~~P~W~e~f~f~v~~~~~~L~i~V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w 201 (249)
.++ .||++++++.||+|||+|.|.+......|.|+|||+|.++ +++||++.|+|+++.. +...+.|
T Consensus 87 ~~rv~RTrVi~n~~NPvWNE~F~f~vah~~s~L~f~VkD~D~~g-aD~IG~a~IPL~~L~~------------Ge~vd~W 153 (868)
T PLN03008 87 QATLARTRVLKNSQEPLWDEKFNISIAHPFAYLEFQVKDDDVFG-AQIIGTAKIPVRDIAS------------GERISGW 153 (868)
T ss_pred CcceeeEEeCCCCCCCCcceeEEEEecCCCceEEEEEEcCCccC-CceeEEEEEEHHHcCC------------CCceEEE
Confidence 764 6999999999999999999999886779999999999996 5899999999999943 4568899
Q ss_pred EecCCCccccCCceeeeCCeEEEEEEEEeccccCceEEEEEEEEeCC
Q 025708 202 LKSDDNALLEDSTINIIDGKVKQKISLKLQNVESGELELELEWMPLD 248 (249)
Q Consensus 202 ~~~~~~~l~~~~~~~~~~g~~~~~~~l~l~~~~~G~i~l~l~~~~~~ 248 (249)
+++.+. +|+ .....|+|+|+|+|.|+.
T Consensus 154 l~Ll~~-----------~~k---------p~k~~~kl~v~lqf~pv~ 180 (868)
T PLN03008 154 FPVLGA-----------SGK---------PPKAETAIFIDMKFTPFD 180 (868)
T ss_pred EEcccc-----------CCC---------CCCCCcEEEEEEEEEEcc
Confidence 996553 111 122468999999999985
No 81
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.74 E-value=5.7e-17 Score=120.31 Aligned_cols=112 Identities=21% Similarity=0.424 Sum_probs=85.0
Q ss_pred EEEEEEEeecCCCCCCCCCCcEEEEEECCeE-EeeeeecCcCCceeeeeEEEEeeC---CCccEEEEEEecCCCCCCCee
Q 025708 95 LKVKVVKGINLAIRDMMSSDPYVVLRLGQQT-VQTTIVKSNLNPVWNEELMLSVPQ---EYGPVKLEVFDHDTFSADDIM 170 (249)
Q Consensus 95 L~V~v~~a~~L~~~~~~~~dpyv~v~l~~~~-~kT~~~~~t~~P~W~e~f~f~v~~---~~~~L~i~V~d~~~~~~d~~i 170 (249)
|+|+|++|++|+.. +.+||||++++++.. ++|+++++ .+|.|||+|.|.+.. ....|.|.+||.+....+.++
T Consensus 2 L~v~vi~a~~l~~~--~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~~~~~ 78 (117)
T cd08383 2 LRLRILEAKNLPSK--GTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDRDIVI 78 (117)
T ss_pred eEEEEEEecCCCcC--CCCCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCCCeeEE
Confidence 78999999999977 678999999998754 79999999 999999999999977 335688889998876666677
Q ss_pred EEEEEechhhhhhhhhcCCCCCcCCeeeeeeEecCCCccccCCceeeeCCeEEEEEEEEeccccCceEEEEEEE
Q 025708 171 GEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVESGELELELEW 244 (249)
Q Consensus 171 G~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~g~~~~~~~l~l~~~~~G~i~l~l~~ 244 (249)
|.+.|..... +.....||++.... -.....|+|+|++.|
T Consensus 79 g~v~l~~~~~--------------~~~~~~w~~L~~~~---------------------~~~~~~G~l~l~~~~ 117 (117)
T cd08383 79 GKVALSKLDL--------------GQGKDEWFPLTPVD---------------------PDSEVQGSVRLRARY 117 (117)
T ss_pred EEEEecCcCC--------------CCcceeEEECccCC---------------------CCCCcCceEEEEEEC
Confidence 7655543322 23467899865431 012347999998875
No 82
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.73 E-value=1.7e-16 Score=120.82 Aligned_cols=103 Identities=24% Similarity=0.370 Sum_probs=83.3
Q ss_pred EEEEEEEEeecCCCCCC-CCCCcEEEEEECC-------------eEEeeeeecCcCCcee-eeeEEEEeeCCCccEEEEE
Q 025708 94 LLKVKVVKGINLAIRDM-MSSDPYVVLRLGQ-------------QTVQTTIVKSNLNPVW-NEELMLSVPQEYGPVKLEV 158 (249)
Q Consensus 94 ~L~V~v~~a~~L~~~~~-~~~dpyv~v~l~~-------------~~~kT~~~~~t~~P~W-~e~f~f~v~~~~~~L~i~V 158 (249)
++.|.+++|++|+ .+. +.+||||++++.. +.++|+++++++||+| ||+|.|.+.. ...|.|+|
T Consensus 2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~~-~~~L~v~V 79 (137)
T cd08691 2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGLP-TDVLEIEV 79 (137)
T ss_pred EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcCC-CCEEEEEE
Confidence 4689999999998 454 4899999999942 3689999999999999 9999999864 46899999
Q ss_pred EecCCCCC---CCeeEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEecCCC
Q 025708 159 FDHDTFSA---DDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDN 207 (249)
Q Consensus 159 ~d~~~~~~---d~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~~~~ 207 (249)
||++..++ +++||++.++|.++...... ..+..|+++..+
T Consensus 80 ~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~---------~~~~~~~~l~k~ 122 (137)
T cd08691 80 KDKFAKSRPIIRRFLGKLSIPVQRLLERHAI---------GDQELSYTLGRR 122 (137)
T ss_pred EecCCCCCccCCceEEEEEEEHHHhcccccC---------CceEEEEECCcC
Confidence 99875443 79999999999999765322 236778886544
No 83
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.73 E-value=1.6e-18 Score=149.52 Aligned_cols=99 Identities=33% Similarity=0.544 Sum_probs=87.6
Q ss_pred eEEEEEEEEeecCCCCCCC-CCCcEEEEEEC-----CeEEeeeeecCcCCceeeeeEEEEeeC--CCccEEEEEEecCCC
Q 025708 93 GLLKVKVVKGINLAIRDMM-SSDPYVVLRLG-----QQTVQTTIVKSNLNPVWNEELMLSVPQ--EYGPVKLEVFDHDTF 164 (249)
Q Consensus 93 g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~-----~~~~kT~~~~~t~~P~W~e~f~f~v~~--~~~~L~i~V~d~~~~ 164 (249)
..|+|.|.+|+||.++|.+ .+||||++.+- ..+++|++++.++||+|||+|+|.+.. .++.|.|+|||||+.
T Consensus 180 ~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWDrT 259 (683)
T KOG0696|consen 180 DVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVWDWDRT 259 (683)
T ss_pred ceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccccccceeEEEEeccccc
Confidence 5688999999999999987 99999999993 356899999999999999999999876 467899999999999
Q ss_pred CCCCeeEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEec
Q 025708 165 SADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKS 204 (249)
Q Consensus 165 ~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~ 204 (249)
+++||+|..++.+++|... .+++||.+
T Consensus 260 sRNDFMGslSFgisEl~K~-------------p~~GWyKl 286 (683)
T KOG0696|consen 260 SRNDFMGSLSFGISELQKA-------------PVDGWYKL 286 (683)
T ss_pred ccccccceecccHHHHhhc-------------chhhHHHH
Confidence 9999999999999999654 46677764
No 84
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.73 E-value=4.5e-17 Score=122.32 Aligned_cols=88 Identities=32% Similarity=0.561 Sum_probs=79.0
Q ss_pred EEEEEEEEeecCCCCCCC-CCCcEEEEEECCeE--EeeeeecCcCCceeeeeEEEEeeC-CCccEEEEEEecCCCCCCCe
Q 025708 94 LLKVKVVKGINLAIRDMM-SSDPYVVLRLGQQT--VQTTIVKSNLNPVWNEELMLSVPQ-EYGPVKLEVFDHDTFSADDI 169 (249)
Q Consensus 94 ~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~~~--~kT~~~~~t~~P~W~e~f~f~v~~-~~~~L~i~V~d~~~~~~d~~ 169 (249)
+|+|.|++|++|+..+.. .+||||++.+++.. .+|++++++.||.|||+|.|.+.. ....|.|+|||++.++.|++
T Consensus 1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~~dd~ 80 (124)
T cd04037 1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLPGNSILKISVMDYDLLGSDDL 80 (124)
T ss_pred CEEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEECCCCCccceEEEEEecCCCCCEEEEEEEECCCCCCCce
Confidence 478999999999998876 89999999998765 578889999999999999999765 45689999999999999999
Q ss_pred eEEEEEechhhh
Q 025708 170 MGEAEIDIQPLL 181 (249)
Q Consensus 170 iG~~~i~l~~l~ 181 (249)
||++.++|.+..
T Consensus 81 iG~~~i~l~~~~ 92 (124)
T cd04037 81 IGETVIDLEDRF 92 (124)
T ss_pred eEEEEEeecccc
Confidence 999999999875
No 85
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.73 E-value=3.6e-17 Score=124.91 Aligned_cols=101 Identities=24% Similarity=0.419 Sum_probs=86.1
Q ss_pred EEEEEEEeecCCCCCCCCCCcEEEEEEC----CeEEeeeeecCcCCceeeeeEEEEeeCC----------------CccE
Q 025708 95 LKVKVVKGINLAIRDMMSSDPYVVLRLG----QQTVQTTIVKSNLNPVWNEELMLSVPQE----------------YGPV 154 (249)
Q Consensus 95 L~V~v~~a~~L~~~~~~~~dpyv~v~l~----~~~~kT~~~~~t~~P~W~e~f~f~v~~~----------------~~~L 154 (249)
|+|.|++|++|+....+.+||||++.++ ...++|++++++.+|.|+|+|.|.+... ...|
T Consensus 1 L~V~Vi~A~~L~~~~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~l 80 (137)
T cd08675 1 LSVRVLECRDLALKSNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSEL 80 (137)
T ss_pred CEEEEEEccCCCcccCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccEE
Confidence 5799999999988833489999999998 6779999999999999999999997653 4579
Q ss_pred EEEEEecCCCCCCCeeEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEecCCC
Q 025708 155 KLEVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDN 207 (249)
Q Consensus 155 ~i~V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~~~~ 207 (249)
.|+|||++..+.+++||++.++|.++... .....||++...
T Consensus 81 ~i~V~d~~~~~~~~~IG~~~i~l~~l~~~------------~~~~~W~~L~~~ 121 (137)
T cd08675 81 RVELWHASMVSGDDFLGEVRIPLQGLQQA------------GSHQAWYFLQPR 121 (137)
T ss_pred EEEEEcCCcCcCCcEEEEEEEehhhccCC------------CcccceEecCCc
Confidence 99999999988999999999999998532 245789987664
No 86
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.73 E-value=2.4e-16 Score=118.57 Aligned_cols=90 Identities=28% Similarity=0.499 Sum_probs=78.5
Q ss_pred eEEEEEEEEeecCCCCCCCCCCcEEEEEECCe-EEeeeeecCcCCceeeeeEEEEeeCCCccEEEEEEecCCCCCCCeeE
Q 025708 93 GLLKVKVVKGINLAIRDMMSSDPYVVLRLGQQ-TVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDTFSADDIMG 171 (249)
Q Consensus 93 g~L~V~v~~a~~L~~~~~~~~dpyv~v~l~~~-~~kT~~~~~t~~P~W~e~f~f~v~~~~~~L~i~V~d~~~~~~d~~iG 171 (249)
..|.|+|.+|+.+.....+.+||||+++++++ ..+|++++++.+|.|||.|.|.+.. ...|.|+|||++..+.+++||
T Consensus 2 ~~L~V~i~~a~l~~~~~~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~~-~~~l~~~V~d~~~~~~~~~iG 80 (125)
T cd04021 2 SQLQITVESAKLKSNSKSFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVTP-QSTLEFKVWSHHTLKADVLLG 80 (125)
T ss_pred ceEEEEEEeeECCCCCcCCCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeCC-CCEEEEEEEeCCCCCCCcEEE
Confidence 36899999999444444348999999999877 7999999999999999999999864 478999999999999999999
Q ss_pred EEEEechhhhhh
Q 025708 172 EAEIDIQPLLTS 183 (249)
Q Consensus 172 ~~~i~l~~l~~~ 183 (249)
++.++|.++...
T Consensus 81 ~~~i~l~~l~~~ 92 (125)
T cd04021 81 EASLDLSDILKN 92 (125)
T ss_pred EEEEEHHHhHhh
Confidence 999999999765
No 87
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.73 E-value=1.3e-16 Score=117.20 Aligned_cols=81 Identities=23% Similarity=0.485 Sum_probs=70.0
Q ss_pred EEEEEEEeecCCCCCCCCCCcEEEEEECC-----eEEeeeeecCcCCceeeeeEEEEeeCCCccEEEEEEec-------C
Q 025708 95 LKVKVVKGINLAIRDMMSSDPYVVLRLGQ-----QTVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDH-------D 162 (249)
Q Consensus 95 L~V~v~~a~~L~~~~~~~~dpyv~v~l~~-----~~~kT~~~~~t~~P~W~e~f~f~v~~~~~~L~i~V~d~-------~ 162 (249)
|.|+|.+|+||+. .+||||++.++. .+.+|+++++|+||+|||+|.|.+.. ...|.+.|||+ |
T Consensus 1 L~V~V~~A~~L~~----~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~-s~~L~~~v~d~~~~~~~~d 75 (118)
T cd08686 1 LNVIVHSAQGFKQ----SANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG-SQTLRILCYEKCYSKVKLD 75 (118)
T ss_pred CEEEEEeCCCCCC----CCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC-CCEEEEEEEEccccccccc
Confidence 6899999999963 479999999853 35899999999999999999999975 57999999998 5
Q ss_pred CCCCCCeeEEEEEechhh
Q 025708 163 TFSADDIMGEAEIDIQPL 180 (249)
Q Consensus 163 ~~~~d~~iG~~~i~l~~l 180 (249)
..+.|++||.+.+.|+.-
T Consensus 76 ~~~~d~~~G~g~i~Ld~~ 93 (118)
T cd08686 76 GEGTDAIMGKGQIQLDPQ 93 (118)
T ss_pred ccCcccEEEEEEEEECHH
Confidence 667899999988888654
No 88
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.72 E-value=2.4e-17 Score=125.28 Aligned_cols=94 Identities=31% Similarity=0.460 Sum_probs=82.1
Q ss_pred cccceeeeEEEEEEEEeecCCCCCCC-CCCcEEEEEECC-----eEEeeeeecCcCCceeeeeEEEEeeCC---CccEEE
Q 025708 86 VGMVEFIGLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQ-----QTVQTTIVKSNLNPVWNEELMLSVPQE---YGPVKL 156 (249)
Q Consensus 86 ~~~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~-----~~~kT~~~~~t~~P~W~e~f~f~v~~~---~~~L~i 156 (249)
..|....+.|.|.|++|++|+..+.. .+||||++.+.. ..++|++++++.+|.|||+|.|.+... ...|.|
T Consensus 7 l~y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~ 86 (134)
T cd00276 7 LSYLPTAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVI 86 (134)
T ss_pred EEeeCCCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEE
Confidence 44555678999999999999988755 889999999854 256999999999999999999998763 478999
Q ss_pred EEEecCCCCCCCeeEEEEEechh
Q 025708 157 EVFDHDTFSADDIMGEAEIDIQP 179 (249)
Q Consensus 157 ~V~d~~~~~~d~~iG~~~i~l~~ 179 (249)
+|||++..+.+++||.+.++|.+
T Consensus 87 ~v~d~~~~~~~~~lG~~~i~l~~ 109 (134)
T cd00276 87 TVVDKDSVGRNEVIGQVVLGPDS 109 (134)
T ss_pred EEEecCCCCCCceeEEEEECCCC
Confidence 99999998899999999999998
No 89
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.72 E-value=3.3e-17 Score=165.17 Aligned_cols=123 Identities=21% Similarity=0.381 Sum_probs=102.0
Q ss_pred cccceeeeEEEEEEEEeecCCCCCCCCCCcEEEEEECCe-EEeeeeecCcCCceeeeeEEEEeeC--CCccEEEEEEecC
Q 025708 86 VGMVEFIGLLKVKVVKGINLAIRDMMSSDPYVVLRLGQQ-TVQTTIVKSNLNPVWNEELMLSVPQ--EYGPVKLEVFDHD 162 (249)
Q Consensus 86 ~~~~~~~g~L~V~v~~a~~L~~~~~~~~dpyv~v~l~~~-~~kT~~~~~t~~P~W~e~f~f~v~~--~~~~L~i~V~d~~ 162 (249)
.-+....|.|+|+|++|.+|. .+.+.+||||++.++++ +.||++++++.||+|||.|+|.+.. ....|.|+|||+|
T Consensus 1973 ~~~~~~~G~L~V~V~~a~nl~-~~~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d 2051 (2102)
T PLN03200 1973 SLLQCLPGSLTVTIKRGNNLK-QSMGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKN 2051 (2102)
T ss_pred HHHhhCCcceEEEEeeccccc-cccCCCCCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecC
Confidence 345566899999999999998 55568999999999965 7899999999999999999987766 3467999999999
Q ss_pred CCCCCCeeEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEecCCCccccCCceeeeCCeEEEEEEEEeccccCce---EE
Q 025708 163 TFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVESGE---LE 239 (249)
Q Consensus 163 ~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~g~~~~~~~l~l~~~~~G~---i~ 239 (249)
.+++ +.||.+.|+|.++..+ ..+.+||++.+ ++.+.|+ |+
T Consensus 2052 ~f~k-d~~G~~~i~l~~vv~~------------~~~~~~~~L~~------------------------~~~k~G~~~~~~ 2094 (2102)
T PLN03200 2052 TFGK-SSLGKVTIQIDRVVME------------GTYSGEYSLNP------------------------ESNKDGSSRTLE 2094 (2102)
T ss_pred ccCC-CCCceEEEEHHHHhcC------------ceeeeeeecCc------------------------ccccCCCcceEE
Confidence 9955 5999999999999643 35667777432 3456888 99
Q ss_pred EEEEEEe
Q 025708 240 LELEWMP 246 (249)
Q Consensus 240 l~l~~~~ 246 (249)
++++|.+
T Consensus 2095 ~e~~w~~ 2101 (2102)
T PLN03200 2095 IEFQWSN 2101 (2102)
T ss_pred EEEEecC
Confidence 9999964
No 90
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.71 E-value=1.1e-16 Score=143.06 Aligned_cols=110 Identities=28% Similarity=0.424 Sum_probs=93.4
Q ss_pred ccccceeeeEEEEEEEEeecCCCCCCC-CCCcEEEEEECC---eEEeeeeecCcCCceeeeeEEEEeeC---CCccEEEE
Q 025708 85 DVGMVEFIGLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQ---QTVQTTIVKSNLNPVWNEELMLSVPQ---EYGPVKLE 157 (249)
Q Consensus 85 ~~~~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~---~~~kT~~~~~t~~P~W~e~f~f~v~~---~~~~L~i~ 157 (249)
++.|......|+|+|++|++|+..+.. .+||||++++.. .+.+|++.++|+||+|||+|.|.|.. ....|.+.
T Consensus 159 sl~Yd~~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l~~~~L~l~ 238 (421)
T KOG1028|consen 159 SLQYDFELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPYEELSNRVLHLS 238 (421)
T ss_pred EEEecccCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCHHHhccCEEEEE
Confidence 466677778999999999999999954 799999999954 45899999999999999999999765 46789999
Q ss_pred EEecCCCCCCCeeEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEecCC
Q 025708 158 VFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDD 206 (249)
Q Consensus 158 V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~~~ 206 (249)
|||+|+|++|++||++.++|..+... .....|.++..
T Consensus 239 V~~~drfsr~~~iGev~~~l~~~~~~------------~~~~~w~~l~~ 275 (421)
T KOG1028|consen 239 VYDFDRFSRHDFIGEVILPLGEVDLL------------STTLFWKDLQP 275 (421)
T ss_pred EEecCCcccccEEEEEEecCcccccc------------ccceeeecccc
Confidence 99999999999999999998877322 12566887655
No 91
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.71 E-value=1.3e-16 Score=120.86 Aligned_cols=102 Identities=31% Similarity=0.508 Sum_probs=87.3
Q ss_pred eEEEEEEEEeecCCCCCCC-CCCcEEEEEECC-----eEEeeeeecCcCCceeeeeEEEEeeC--CCccEEEEEEecCCC
Q 025708 93 GLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQ-----QTVQTTIVKSNLNPVWNEELMLSVPQ--EYGPVKLEVFDHDTF 164 (249)
Q Consensus 93 g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~-----~~~kT~~~~~t~~P~W~e~f~f~v~~--~~~~L~i~V~d~~~~ 164 (249)
+.|+|+|++|++|+..+.. .+||||++.+.+ ..++|++++++.+|.|||+|.|.+.. ....|.|+|||++..
T Consensus 13 ~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~~~~ 92 (131)
T cd04026 13 NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDWDRT 92 (131)
T ss_pred CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEECCCC
Confidence 8899999999999987765 789999999953 56899999999999999999999875 346799999999998
Q ss_pred CCCCeeEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEecCCC
Q 025708 165 SADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDN 207 (249)
Q Consensus 165 ~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~~~~ 207 (249)
+.+++||++.++|.++... ....||++.+.
T Consensus 93 ~~~~~iG~~~~~l~~l~~~-------------~~~~w~~L~~~ 122 (131)
T cd04026 93 TRNDFMGSLSFGVSELIKM-------------PVDGWYKLLNQ 122 (131)
T ss_pred CCcceeEEEEEeHHHhCcC-------------ccCceEECcCc
Confidence 8999999999999999532 35678875443
No 92
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.71 E-value=1.8e-16 Score=118.30 Aligned_cols=86 Identities=30% Similarity=0.493 Sum_probs=74.7
Q ss_pred EEEEeecCCCCCCC-CCCcEEEEEECCe-------EEeeeeecCcCCceeeeeEEEEeeC-CCccEEEEEEecCC----C
Q 025708 98 KVVKGINLAIRDMM-SSDPYVVLRLGQQ-------TVQTTIVKSNLNPVWNEELMLSVPQ-EYGPVKLEVFDHDT----F 164 (249)
Q Consensus 98 ~v~~a~~L~~~~~~-~~dpyv~v~l~~~-------~~kT~~~~~t~~P~W~e~f~f~v~~-~~~~L~i~V~d~~~----~ 164 (249)
..++|++|+..+.. .+||||++++... .++|++++++.||+|+|+|.|.+.. ....|.|+|||++. +
T Consensus 5 ~~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~~ 84 (120)
T cd04048 5 LSISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKDL 84 (120)
T ss_pred EEEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCCC
Confidence 45789999988865 8999999999554 3899999999999999999998654 45689999999997 7
Q ss_pred CCCCeeEEEEEechhhhhh
Q 025708 165 SADDIMGEAEIDIQPLLTS 183 (249)
Q Consensus 165 ~~d~~iG~~~i~l~~l~~~ 183 (249)
+++++||++.+++.++..+
T Consensus 85 ~~~d~iG~~~i~l~~l~~~ 103 (120)
T cd04048 85 SDHDFLGEAECTLGEIVSS 103 (120)
T ss_pred CCCcEEEEEEEEHHHHhcC
Confidence 8999999999999999643
No 93
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.68 E-value=1.6e-15 Score=114.27 Aligned_cols=88 Identities=31% Similarity=0.517 Sum_probs=76.1
Q ss_pred eEEEEEEEEeecCCCCC---CCCCCcEEEEEE------CCeEEeeeeecCcC-CceeeeeEEEEeeCC-CccEEEEEEec
Q 025708 93 GLLKVKVVKGINLAIRD---MMSSDPYVVLRL------GQQTVQTTIVKSNL-NPVWNEELMLSVPQE-YGPVKLEVFDH 161 (249)
Q Consensus 93 g~L~V~v~~a~~L~~~~---~~~~dpyv~v~l------~~~~~kT~~~~~t~-~P~W~e~f~f~v~~~-~~~L~i~V~d~ 161 (249)
-.|+|+|++|++|+..+ .+..||||++++ ...+.+|+++.++. +|.|+|+|.|.+... ...|.|+|||+
T Consensus 2 ~~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~ 81 (128)
T cd00275 2 LTLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDE 81 (128)
T ss_pred eEEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeC
Confidence 36899999999999887 238899999999 34568999988776 999999999998763 35799999999
Q ss_pred CCCCCCCeeEEEEEechhhh
Q 025708 162 DTFSADDIMGEAEIDIQPLL 181 (249)
Q Consensus 162 ~~~~~d~~iG~~~i~l~~l~ 181 (249)
+.. ++++||.+.++|.++.
T Consensus 82 ~~~-~~~~iG~~~~~l~~l~ 100 (128)
T cd00275 82 DSG-DDDFLGQACLPLDSLR 100 (128)
T ss_pred CCC-CCcEeEEEEEEhHHhc
Confidence 988 8999999999999983
No 94
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.67 E-value=5.1e-16 Score=116.38 Aligned_cols=97 Identities=28% Similarity=0.421 Sum_probs=82.6
Q ss_pred cccceeeeEEEEEEEEeecCCCCCCC-CCCcEEEEEEC-----CeEEeeeeecCcCCceeeeeEEEE-eeC---CCccEE
Q 025708 86 VGMVEFIGLLKVKVVKGINLAIRDMM-SSDPYVVLRLG-----QQTVQTTIVKSNLNPVWNEELMLS-VPQ---EYGPVK 155 (249)
Q Consensus 86 ~~~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~-----~~~~kT~~~~~t~~P~W~e~f~f~-v~~---~~~~L~ 155 (249)
+.|....+.|+|+|++|++|+..+.. .+||||++.+. ....+|++++++.+|.|||.|.|. +.. ....|.
T Consensus 8 l~y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~ 87 (123)
T cd04035 8 LLYDPANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLR 87 (123)
T ss_pred EEEeCCCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEE
Confidence 45666778999999999999988765 88999999983 236899999999999999999996 332 246899
Q ss_pred EEEEecCCCCCCCeeEEEEEechhhhhh
Q 025708 156 LEVFDHDTFSADDIMGEAEIDIQPLLTS 183 (249)
Q Consensus 156 i~V~d~~~~~~d~~iG~~~i~l~~l~~~ 183 (249)
|+|||++.+ .+++||.+.++|.++..+
T Consensus 88 ~~v~d~~~~-~~~~iG~~~i~l~~l~~~ 114 (123)
T cd04035 88 LLVLDEDRF-GNDFLGETRIPLKKLKPN 114 (123)
T ss_pred EEEEEcCCc-CCeeEEEEEEEcccCCCC
Confidence 999999988 889999999999999644
No 95
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.62 E-value=3.4e-15 Score=109.66 Aligned_cols=85 Identities=29% Similarity=0.576 Sum_probs=72.8
Q ss_pred EEEEEEeecCCCCCCC-CCCcEEEEEECCe------EEeeeeecCcCCceeeeeEEEEeeC-----CCccEEEEEEecCC
Q 025708 96 KVKVVKGINLAIRDMM-SSDPYVVLRLGQQ------TVQTTIVKSNLNPVWNEELMLSVPQ-----EYGPVKLEVFDHDT 163 (249)
Q Consensus 96 ~V~v~~a~~L~~~~~~-~~dpyv~v~l~~~------~~kT~~~~~t~~P~W~e~f~f~v~~-----~~~~L~i~V~d~~~ 163 (249)
.+..++|++|+..+.. .+||||++++... .++|++++++.||.|| +|.|.+.. ....|.|+|||++.
T Consensus 3 ~~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~ 81 (110)
T cd04047 3 VELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDS 81 (110)
T ss_pred EEEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCC
Confidence 3456799999998876 8999999998432 4899999999999999 68877532 25689999999999
Q ss_pred CCCCCeeEEEEEechhhh
Q 025708 164 FSADDIMGEAEIDIQPLL 181 (249)
Q Consensus 164 ~~~d~~iG~~~i~l~~l~ 181 (249)
.++|++||++.+++.++.
T Consensus 82 ~~~d~~iG~~~~~l~~l~ 99 (110)
T cd04047 82 SGKHDLIGEFETTLDELL 99 (110)
T ss_pred CCCCcEEEEEEEEHHHHh
Confidence 999999999999999996
No 96
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.60 E-value=9e-15 Score=101.57 Aligned_cols=80 Identities=33% Similarity=0.640 Sum_probs=71.4
Q ss_pred EEEEEEEeecCCCCCCC-CCCcEEEEEECC---eEEeeeeecCcCCceeeeeEEEEeeC-CCccEEEEEEecCCCCCCCe
Q 025708 95 LKVKVVKGINLAIRDMM-SSDPYVVLRLGQ---QTVQTTIVKSNLNPVWNEELMLSVPQ-EYGPVKLEVFDHDTFSADDI 169 (249)
Q Consensus 95 L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~---~~~kT~~~~~t~~P~W~e~f~f~v~~-~~~~L~i~V~d~~~~~~d~~ 169 (249)
|+|+|++|++|+..+.. ..||||++.+.. ..++|+++.++.+|.|+|+|.|.+.. ....|.|+|||++..+.|++
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~~~ 80 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGKDEL 80 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEETSSSSEEE
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecccccceEEEEEECCCCCCCCE
Confidence 78999999999987765 889999999966 67999999999999999999999655 44569999999999988999
Q ss_pred eEEEE
Q 025708 170 MGEAE 174 (249)
Q Consensus 170 iG~~~ 174 (249)
||++.
T Consensus 81 iG~~~ 85 (85)
T PF00168_consen 81 IGEVK 85 (85)
T ss_dssp EEEEE
T ss_pred EEEEC
Confidence 99974
No 97
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.57 E-value=5.9e-15 Score=132.73 Aligned_cols=130 Identities=25% Similarity=0.532 Sum_probs=110.5
Q ss_pred cccceeeeEEEEEEEEeecCCCCCCC-CCCcEEEEEECCeEEeeeeecCcCCceeeeeEEEEeeCCCccEEEEEEecCC-
Q 025708 86 VGMVEFIGLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDT- 163 (249)
Q Consensus 86 ~~~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~~~~kT~~~~~t~~P~W~e~f~f~v~~~~~~L~i~V~d~~~- 163 (249)
.+...+...++++|+.|.+|..+|.. ++||||...++..+.+|+++...+||+|||.|.|.+.+....+++.|||.|.
T Consensus 288 egsskwsakitltvlcaqgl~akdktg~sdpyvt~qv~ktkrrtrti~~~lnpvw~ekfhfechnstdrikvrvwded~d 367 (1283)
T KOG1011|consen 288 EGSSKWSAKITLTVLCAQGLIAKDKTGKSDPYVTAQVGKTKRRTRTIHQELNPVWNEKFHFECHNSTDRIKVRVWDEDND 367 (1283)
T ss_pred ccccccceeeEEeeeecccceecccCCCCCCcEEEeecccchhhHhhhhccchhhhhheeeeecCCCceeEEEEecCccc
Confidence 45677889999999999999999885 9999999999999999999999999999999999999988899999999874
Q ss_pred ----------CCCCCeeEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEecCCCccccCCceeeeCCeEEEEEEEEeccc
Q 025708 164 ----------FSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNV 233 (249)
Q Consensus 164 ----------~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~g~~~~~~~l~l~~~ 233 (249)
-.+|||+|...|.+..|.. .++-||. |.+.+..+..+|.+..-|.+.+++.
T Consensus 368 lksklrqkl~resddflgqtvievrtlsg--------------emdvwyn-----lekrtdksavsgairlhisveikge 428 (1283)
T KOG1011|consen 368 LKSKLRQKLTRESDDFLGQTVIEVRTLSG--------------EMDVWYN-----LEKRTDKSAVSGAIRLHISVEIKGE 428 (1283)
T ss_pred HHHHHHHHhhhcccccccceeEEEEeccc--------------chhhhcc-----hhhccchhhccceEEEEEEEEEcCc
Confidence 2468999999999988832 4788997 4555566667788877777777664
Q ss_pred c
Q 025708 234 E 234 (249)
Q Consensus 234 ~ 234 (249)
+
T Consensus 429 e 429 (1283)
T KOG1011|consen 429 E 429 (1283)
T ss_pred c
Confidence 3
No 98
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.54 E-value=2.1e-14 Score=128.40 Aligned_cols=122 Identities=27% Similarity=0.403 Sum_probs=97.9
Q ss_pred ccccccceeeeEEEEEEEEeecCCCCCCC-CCCcEEEEEECC-----eEEeeeeecCcCCceeeeeEEEEeeC---CCcc
Q 025708 83 KKDVGMVEFIGLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQ-----QTVQTTIVKSNLNPVWNEELMLSVPQ---EYGP 153 (249)
Q Consensus 83 ~~~~~~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~-----~~~kT~~~~~t~~P~W~e~f~f~v~~---~~~~ 153 (249)
..+++|....|.|+|.|++|++|+.++.+ .+||||++.+-. .+++|.+.+++.||+|||+|.|.|+. ....
T Consensus 288 ~~sL~Y~p~~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~~npv~nesf~F~vp~~~l~~~~ 367 (421)
T KOG1028|consen 288 LLSLCYLPTAGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSVKKKTLNPVFNETFVFDVPPEQLAEVS 367 (421)
T ss_pred EEEEEeecCCCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCceeeeeeeecccCCCCCcccccEEEeCCHHHhheeE
Confidence 44677888899999999999999999887 889999999822 35789999999999999999999876 3457
Q ss_pred EEEEEEecCCCCCCCeeEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEec
Q 025708 154 VKLEVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKS 204 (249)
Q Consensus 154 L~i~V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~ 204 (249)
|.|+|||++.++++++||++.+....--.+..++..+....+.++..|..|
T Consensus 368 l~l~V~d~d~~~~~~~iG~~~lG~~~~~~~~~hW~~m~~~p~~pv~~wh~l 418 (421)
T KOG1028|consen 368 LELTVWDHDTLGSNDLIGRCILGSDSTGEEVRHWQEMLNSPRKPVAQWHSL 418 (421)
T ss_pred EEEEEEEcccccccceeeEEEecCCCCchHHHHHHHHHhCccCceeeeEec
Confidence 999999999999999999999988762222333333333456777777653
No 99
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=99.54 E-value=1.9e-14 Score=130.43 Aligned_cols=101 Identities=27% Similarity=0.438 Sum_probs=89.5
Q ss_pred eEEEEEEEEeecCCCCCCC-CCCcEEEEEECCeE-EeeeeecCcCCceeeeeEEEEeeCCCccEEEEEEecCCCCCCCee
Q 025708 93 GLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQQT-VQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDTFSADDIM 170 (249)
Q Consensus 93 g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~~~-~kT~~~~~t~~P~W~e~f~f~v~~~~~~L~i~V~d~~~~~~d~~i 170 (249)
..|.|.|.+|+||+..+.. ..||||.|.++... .+|.++.+++.|.|.|+|.|.++..-..|.|.|||.| +++|+.|
T Consensus 5 ~sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v~RT~tv~ksL~PF~gEe~~~~iP~~F~~l~fYv~D~d-~~~D~~I 83 (800)
T KOG2059|consen 5 QSLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEVCRTATVEKSLCPFFGEEFYFEIPRTFRYLSFYVWDRD-LKRDDII 83 (800)
T ss_pred cceeEEEeecccCCCCCCCCCcCcceEEeecchhhhhhhhhhhhcCCccccceEEecCcceeeEEEEEeccc-ccccccc
Confidence 4689999999999999876 89999999998754 8999999999999999999999998899999999999 8999999
Q ss_pred EEEEEechhhhhhhhhcCCCCCcCCeeeeeeEecCC
Q 025708 171 GEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDD 206 (249)
Q Consensus 171 G~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~~~ 206 (249)
|.+.|.-++|..- ...+.||.|+.
T Consensus 84 GKvai~re~l~~~------------~~~d~W~~L~~ 107 (800)
T KOG2059|consen 84 GKVAIKREDLHMY------------PGKDTWFSLQP 107 (800)
T ss_pred ceeeeeHHHHhhC------------CCCccceeccc
Confidence 9999998888432 24678998654
No 100
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.47 E-value=5.4e-13 Score=100.53 Aligned_cols=90 Identities=28% Similarity=0.335 Sum_probs=76.5
Q ss_pred EEEEEEEeecCCCCCC---C--CCCcEEEEEECC---eEEeeeeecCcCC--ceeeeeEEEEeeC---------------
Q 025708 95 LKVKVVKGINLAIRDM---M--SSDPYVVLRLGQ---QTVQTTIVKSNLN--PVWNEELMLSVPQ--------------- 149 (249)
Q Consensus 95 L~V~v~~a~~L~~~~~---~--~~dpyv~v~l~~---~~~kT~~~~~t~~--P~W~e~f~f~v~~--------------- 149 (249)
|+|.|.+|++++..+. + .+||||++.+.+ .+++|.++.+++| |.||++|.|++..
T Consensus 2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~ 81 (133)
T cd08374 2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHF 81 (133)
T ss_pred EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccc
Confidence 7999999999775443 2 489999999954 4689999999999 9999999998654
Q ss_pred ---------CCccEEEEEEecCCCCCCCeeEEEEEechhhhhhh
Q 025708 150 ---------EYGPVKLEVFDHDTFSADDIMGEAEIDIQPLLTSA 184 (249)
Q Consensus 150 ---------~~~~L~i~V~d~~~~~~d~~iG~~~i~l~~l~~~~ 184 (249)
....|.|+|||.|.+++|++||.+.++|..+..+.
T Consensus 82 ~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~~~ 125 (133)
T cd08374 82 WSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPRPA 125 (133)
T ss_pred cccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhccccc
Confidence 13579999999999999999999999999986553
No 101
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=99.46 E-value=1.1e-12 Score=93.38 Aligned_cols=91 Identities=38% Similarity=0.694 Sum_probs=80.2
Q ss_pred EEEEEEEEeecCCCCCCC-CCCcEEEEEECCe---EEeeeeecCcCCceeeeeEEEEeeCC-CccEEEEEEecCCCCCCC
Q 025708 94 LLKVKVVKGINLAIRDMM-SSDPYVVLRLGQQ---TVQTTIVKSNLNPVWNEELMLSVPQE-YGPVKLEVFDHDTFSADD 168 (249)
Q Consensus 94 ~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~~---~~kT~~~~~t~~P~W~e~f~f~v~~~-~~~L~i~V~d~~~~~~d~ 168 (249)
.|.|.|++|++|...... ..+|||++.+... ..+|+++.++.+|.|+|+|.|.+... ...|.|+|||.+..+.+.
T Consensus 1 ~l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~~~~ 80 (101)
T smart00239 1 TLTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFGRDD 80 (101)
T ss_pred CeEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCccCCc
Confidence 378999999999887764 7899999999764 79999999999999999999999875 789999999999877789
Q ss_pred eeEEEEEechhhhhhh
Q 025708 169 IMGEAEIDIQPLLTSA 184 (249)
Q Consensus 169 ~iG~~~i~l~~l~~~~ 184 (249)
++|.+.+++.++..+.
T Consensus 81 ~~G~~~~~l~~~~~~~ 96 (101)
T smart00239 81 FIGQVTIPLSDLLLGG 96 (101)
T ss_pred eeEEEEEEHHHcccCc
Confidence 9999999999986553
No 102
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=99.44 E-value=1.6e-12 Score=92.05 Aligned_cols=87 Identities=46% Similarity=0.786 Sum_probs=78.3
Q ss_pred EEEEEEEeecCCCCCCC-CCCcEEEEEECC-eEEeeeeecCcCCceeeeeEEEEeeC-CCccEEEEEEecCCCCCCCeeE
Q 025708 95 LKVKVVKGINLAIRDMM-SSDPYVVLRLGQ-QTVQTTIVKSNLNPVWNEELMLSVPQ-EYGPVKLEVFDHDTFSADDIMG 171 (249)
Q Consensus 95 L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~-~~~kT~~~~~t~~P~W~e~f~f~v~~-~~~~L~i~V~d~~~~~~d~~iG 171 (249)
|.|.|++|++|...... ..+|||.+.+.. ...+|.+..++.+|.|++.|.|.+.. ....|.|+||+++..+.+.+||
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ig 80 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFSKDDFLG 80 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCCCCceeE
Confidence 57899999999875544 789999999987 78999999999999999999999987 5678999999999887789999
Q ss_pred EEEEechhhh
Q 025708 172 EAEIDIQPLL 181 (249)
Q Consensus 172 ~~~i~l~~l~ 181 (249)
.+.+++..+.
T Consensus 81 ~~~~~l~~l~ 90 (102)
T cd00030 81 EVEIPLSELL 90 (102)
T ss_pred EEEEeHHHhh
Confidence 9999999996
No 103
>PLN02270 phospholipase D alpha
Probab=99.40 E-value=4.6e-12 Score=118.73 Aligned_cols=125 Identities=18% Similarity=0.354 Sum_probs=101.1
Q ss_pred eeeEEEEEEEEeecCCCCC-----------------C--CCCCcEEEEEECCeE-EeeeeecCc-CCceeeeeEEEEeeC
Q 025708 91 FIGLLKVKVVKGINLAIRD-----------------M--MSSDPYVVLRLGQQT-VQTTIVKSN-LNPVWNEELMLSVPQ 149 (249)
Q Consensus 91 ~~g~L~V~v~~a~~L~~~~-----------------~--~~~dpyv~v~l~~~~-~kT~~~~~t-~~P~W~e~f~f~v~~ 149 (249)
.-|.|.|+|.+|++|+..+ . ..+||||.|.+++.+ .+|+++.+. .||.|+|.|.+.+..
T Consensus 6 lhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~ah 85 (808)
T PLN02270 6 LHGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCAH 85 (808)
T ss_pred eecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeecc
Confidence 4689999999999998631 1 157999999998765 699999885 699999999999998
Q ss_pred CCccEEEEEEecCCCCCCCeeEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEecCCCccccCCceeeeCCeEEEEEEEE
Q 025708 150 EYGPVKLEVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLK 229 (249)
Q Consensus 150 ~~~~L~i~V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~g~~~~~~~l~ 229 (249)
....+.|+|.|.+.++. .+||.+.||+.+++. +..+++||++.+. +|+.
T Consensus 86 ~~~~v~f~vkd~~~~g~-~~ig~~~~p~~~~~~------------g~~i~~~~~~~~~-----------~~~p------- 134 (808)
T PLN02270 86 MASNIIFTVKDDNPIGA-TLIGRAYIPVEEILD------------GEEVDRWVEILDN-----------DKNP------- 134 (808)
T ss_pred CcceEEEEEecCCccCc-eEEEEEEEEHHHhcC------------CCccccEEeccCC-----------CCCc-------
Confidence 77899999999999876 599999999999954 3468999995442 2332
Q ss_pred eccccCceEEEEEEEEeCC
Q 025708 230 LQNVESGELELELEWMPLD 248 (249)
Q Consensus 230 l~~~~~G~i~l~l~~~~~~ 248 (249)
....-+||++|+|.|+.
T Consensus 135 --~~~~~~~~~~~~f~~~~ 151 (808)
T PLN02270 135 --IHGGSKIHVKLQYFEVT 151 (808)
T ss_pred --CCCCCEEEEEEEEEEcc
Confidence 11245899999999975
No 104
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.38 E-value=2.4e-12 Score=114.94 Aligned_cols=114 Identities=30% Similarity=0.510 Sum_probs=98.5
Q ss_pred eeEEEEEEEEeecCCCCCCC--CCCcEEEEEECCeEEeeeeecCcCCceee-eeEEEEeeC---CCccEEEEEEecCCCC
Q 025708 92 IGLLKVKVVKGINLAIRDMM--SSDPYVVLRLGQQTVQTTIVKSNLNPVWN-EELMLSVPQ---EYGPVKLEVFDHDTFS 165 (249)
Q Consensus 92 ~g~L~V~v~~a~~L~~~~~~--~~dpyv~v~l~~~~~kT~~~~~t~~P~W~-e~f~f~v~~---~~~~L~i~V~d~~~~~ 165 (249)
.|.|.|.|..|++||.+|.. ..|.||.+.++...++|.+..+++||.|| +.|.|+|.+ .+.+|.|+++|+|..+
T Consensus 2 pgkl~vki~a~r~lpvmdkasd~tdafveik~~n~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dtys 81 (1169)
T KOG1031|consen 2 PGKLGVKIKAARHLPVMDKASDLTDAFVEIKFANTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDTYS 81 (1169)
T ss_pred CCcceeEEEeccCCcccccccccchheeEEEecccceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEecccccc
Confidence 37889999999999999986 78999999999999999999999999999 789999977 4679999999999999
Q ss_pred CCCeeEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEecCCC
Q 025708 166 ADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDN 207 (249)
Q Consensus 166 ~d~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~~~~ 207 (249)
.+|-||.+.|+++.|.-+.... .-..++..+.+|||..+-
T Consensus 82 andaigkv~i~idpl~~e~aaq--avhgkgtvisgw~pifdt 121 (1169)
T KOG1031|consen 82 ANDAIGKVNIDIDPLCLEEAAQ--AVHGKGTVISGWFPIFDT 121 (1169)
T ss_pred cccccceeeeccChHHHHhHHh--hhcCCceEEeeeeeccee
Confidence 9999999999999986443221 112568899999997664
No 105
>PLN02223 phosphoinositide phospholipase C
Probab=99.37 E-value=8.8e-12 Score=112.52 Aligned_cols=96 Identities=23% Similarity=0.458 Sum_probs=78.7
Q ss_pred eeEEEEEEEEeecCCCC-----CCC-CCCcEEEEEECC-----eEEeeeeecCcCCceeeeeEEEEeeCC-CccEEEEEE
Q 025708 92 IGLLKVKVVKGINLAIR-----DMM-SSDPYVVLRLGQ-----QTVQTTIVKSNLNPVWNEELMLSVPQE-YGPVKLEVF 159 (249)
Q Consensus 92 ~g~L~V~v~~a~~L~~~-----~~~-~~dpyv~v~l~~-----~~~kT~~~~~t~~P~W~e~f~f~v~~~-~~~L~i~V~ 159 (249)
...|+|+|+.|.+++.. +.. .+||||+|.+.+ ..++|.+..++.||+|||+|.|.+..+ -..|+|+|+
T Consensus 408 ~~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~ 487 (537)
T PLN02223 408 VKILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVY 487 (537)
T ss_pred ceEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEE
Confidence 46799999999987521 122 679999999943 356788888899999999999998764 456899999
Q ss_pred ecCCCCCCCeeEEEEEechhhhhhhhhc
Q 025708 160 DHDTFSADDIMGEAEIDIQPLLTSALAF 187 (249)
Q Consensus 160 d~~~~~~d~~iG~~~i~l~~l~~~~~~~ 187 (249)
|+|..+.++|+|+..+|+..|..+.++.
T Consensus 488 D~D~~~~ddfiGQ~~LPv~~Lr~GyR~V 515 (537)
T PLN02223 488 DYEVSTADAFCGQTCLPVSELIEGIRAV 515 (537)
T ss_pred ecCCCCCCcEEEEEecchHHhcCCceeE
Confidence 9999888999999999999998776443
No 106
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.31 E-value=2e-11 Score=116.59 Aligned_cols=96 Identities=27% Similarity=0.548 Sum_probs=85.6
Q ss_pred cceeeeEEEEEEEEeecCCCCCC---CCCCcEEEEEECCe-EEeeeeecCcCCceeeeeEEEEeeCCCccEEEEEEecCC
Q 025708 88 MVEFIGLLKVKVVKGINLAIRDM---MSSDPYVVLRLGQQ-TVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDT 163 (249)
Q Consensus 88 ~~~~~g~L~V~v~~a~~L~~~~~---~~~dpyv~v~l~~~-~~kT~~~~~t~~P~W~e~f~f~v~~~~~~L~i~V~d~~~ 163 (249)
.....|+|.|+|.+|++|...+. ...|||+++.+... ..+|++.+++.||+|||+|.+.+......|.++|||.+.
T Consensus 431 s~~aIGVv~vkI~sa~~lk~~d~~i~~~vDpyit~~~~~r~~gkT~v~~nt~nPvwNEt~Yi~lns~~d~L~LslyD~n~ 510 (1227)
T COG5038 431 SGTAIGVVEVKIKSAEGLKKSDSTINGTVDPYITVTFSDRVIGKTRVKKNTLNPVWNETFYILLNSFTDPLNLSLYDFNS 510 (1227)
T ss_pred cCCeeEEEEEEEeeccCcccccccccCCCCceEEEEeccccCCccceeeccCCccccceEEEEecccCCceeEEEEeccc
Confidence 55678999999999999998883 38999999998543 469999999999999999999998877899999999998
Q ss_pred CCCCCeeEEEEEechhhhhh
Q 025708 164 FSADDIMGEAEIDIQPLLTS 183 (249)
Q Consensus 164 ~~~d~~iG~~~i~l~~l~~~ 183 (249)
+.+|+.+|++.++|..|...
T Consensus 511 ~~sd~vvG~~~l~L~~L~~~ 530 (1227)
T COG5038 511 FKSDKVVGSTQLDLALLHQN 530 (1227)
T ss_pred cCCcceeeeEEechHHhhhc
Confidence 89999999999999988644
No 107
>PLN02952 phosphoinositide phospholipase C
Probab=99.28 E-value=7.6e-11 Score=108.48 Aligned_cols=93 Identities=25% Similarity=0.344 Sum_probs=77.2
Q ss_pred eeEEEEEEEEeecCCCCC------CC-CCCcEEEEEEC-----CeEEeeeeecCcCCceeeeeEEEEeeCC-CccEEEEE
Q 025708 92 IGLLKVKVVKGINLAIRD------MM-SSDPYVVLRLG-----QQTVQTTIVKSNLNPVWNEELMLSVPQE-YGPVKLEV 158 (249)
Q Consensus 92 ~g~L~V~v~~a~~L~~~~------~~-~~dpyv~v~l~-----~~~~kT~~~~~t~~P~W~e~f~f~v~~~-~~~L~i~V 158 (249)
...|+|.|+.|.+|+... .. ..||||+|.+- ..+.+|+++.++.||+|||+|.|.+..+ -..|.|.|
T Consensus 469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V 548 (599)
T PLN02952 469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEV 548 (599)
T ss_pred cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEE
Confidence 468999999999875321 11 35999999983 3567999999999999999999998763 35689999
Q ss_pred EecCCCCCCCeeEEEEEechhhhhhh
Q 025708 159 FDHDTFSADDIMGEAEIDIQPLLTSA 184 (249)
Q Consensus 159 ~d~~~~~~d~~iG~~~i~l~~l~~~~ 184 (249)
||+|..+.++|+|.+.+||..|..+.
T Consensus 549 ~D~D~~~~ddfiGq~~lPv~~Lr~Gy 574 (599)
T PLN02952 549 REYDMSEKDDFGGQTCLPVSELRPGI 574 (599)
T ss_pred EecCCCCCCCeEEEEEcchhHhcCCc
Confidence 99999888999999999999997664
No 108
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.26 E-value=1.1e-11 Score=118.29 Aligned_cols=103 Identities=37% Similarity=0.533 Sum_probs=93.5
Q ss_pred CccccccceeeeEEEEEEEEeecCCCCCCC-CCCcEEEEEECCe-EEeeeeecCcCCceeeeeEEEEeeC-CCccEEEEE
Q 025708 82 QKKDVGMVEFIGLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQQ-TVQTTIVKSNLNPVWNEELMLSVPQ-EYGPVKLEV 158 (249)
Q Consensus 82 ~~~~~~~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~~-~~kT~~~~~t~~P~W~e~f~f~v~~-~~~~L~i~V 158 (249)
...+..+.+..|-|+|.+..|.||+..+.+ .+||||++.+... .++|+++++|+||+|||.|.++|.. ....+.|.|
T Consensus 1029 ~l~~~emv~nsG~l~I~~~~~~nl~~~d~ng~sDpfv~~~ln~k~vyktkv~KktlNPvwNEe~~i~v~~r~~D~~~i~v 1108 (1227)
T COG5038 1029 KLPPVEMVENSGYLTIMLRSGENLPSSDENGYSDPFVKLFLNEKSVYKTKVVKKTLNPVWNEEFTIEVLNRVKDVLTINV 1108 (1227)
T ss_pred ccCcceeecccCcEEEEEeccCCCcccccCCCCCceEEEEecceecccccchhccCCCCccccceEeeeccccceEEEEE
Confidence 566777888899999999999999999987 6999999999776 6899999999999999999999986 667899999
Q ss_pred EecCCCCCCCeeEEEEEechhhhhhh
Q 025708 159 FDHDTFSADDIMGEAEIDIQPLLTSA 184 (249)
Q Consensus 159 ~d~~~~~~d~~iG~~~i~l~~l~~~~ 184 (249)
+|||...+++.||.+.++|..+..+.
T Consensus 1109 ~Dwd~~~knd~lg~~~idL~~l~~~~ 1134 (1227)
T COG5038 1109 NDWDSGEKNDLLGTAEIDLSKLEPGG 1134 (1227)
T ss_pred eecccCCCccccccccccHhhcCcCC
Confidence 99999999999999999999996554
No 109
>KOG0703 consensus Predicted GTPase-activating protein [Signal transduction mechanisms]
Probab=99.25 E-value=3.1e-12 Score=106.44 Aligned_cols=55 Identities=45% Similarity=0.808 Sum_probs=46.4
Q ss_pred CccccCchHHHHHHhhcCCCCCCCCCCCCCHHHHHHHHHHHhhcccccCCccccCCCCC
Q 025708 1 MIEVGGNSSANAIYEAFIPEGVSKPGPDSSHEIRSKFIRSKYELQEFLKPSLRIASGKP 59 (249)
Q Consensus 1 ~~~~~gn~~~n~~~e~~~p~~~~kp~~~~~~~~~e~~ir~ky~~~~f~~~~~~~~ss~~ 59 (249)
|..+ ||..||++||++||+.|.+|++++ .+|+|||+|||.++|+++.....+..+
T Consensus 81 m~~~-GN~~an~~~ea~~p~~~~~p~~d~---~~e~FIR~KYE~kkf~~~~~~~~s~~~ 135 (287)
T KOG0703|consen 81 MISM-GNAKANSYYEAKLPDPFRRPGPDD---LVEQFIRDKYERKKFLDPEEDITSKPG 135 (287)
T ss_pred HHHH-cchhhhhhccccCCccccCCChHH---HHHHHHHHHHhhhhhccchhhcccCCC
Confidence 4455 899999999999999999999987 889999999999999998743343333
No 110
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=99.24 E-value=4.7e-11 Score=110.07 Aligned_cols=95 Identities=24% Similarity=0.414 Sum_probs=79.5
Q ss_pred EEEEEEEEeecCCCCCC----C-CCCcEEEEEECC-----eEEeee-eecCcCCceeeeeEEEEeeC-CCccEEEEEEec
Q 025708 94 LLKVKVVKGINLAIRDM----M-SSDPYVVLRLGQ-----QTVQTT-IVKSNLNPVWNEELMLSVPQ-EYGPVKLEVFDH 161 (249)
Q Consensus 94 ~L~V~v~~a~~L~~~~~----~-~~dpyv~v~l~~-----~~~kT~-~~~~t~~P~W~e~f~f~v~~-~~~~L~i~V~d~ 161 (249)
+|+|.|+.+.++++... + ..||||.|++.+ ...+|+ +..++.+|.|+|+|+|.+.. +-..|+|.|+|+
T Consensus 617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~ 696 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDY 696 (746)
T ss_pred eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEec
Confidence 79999999997765422 2 679999999843 347899 56678999999999999987 446789999999
Q ss_pred CCCCCCCeeEEEEEechhhhhhhhhcC
Q 025708 162 DTFSADDIMGEAEIDIQPLLTSALAFG 188 (249)
Q Consensus 162 ~~~~~d~~iG~~~i~l~~l~~~~~~~~ 188 (249)
|..++|||+|+..+|+.+|..+.++..
T Consensus 697 d~~~~ddF~GQ~tlP~~~L~~GyRhVp 723 (746)
T KOG0169|consen 697 DYIGKDDFIGQTTLPVSELRQGYRHVP 723 (746)
T ss_pred CCCCcccccceeeccHHHhhCceeeee
Confidence 999999999999999999988876653
No 111
>PLN02230 phosphoinositide phospholipase C 4
Probab=99.24 E-value=9.1e-11 Score=107.82 Aligned_cols=96 Identities=25% Similarity=0.408 Sum_probs=79.4
Q ss_pred eeEEEEEEEEeecCCCC------CCC-CCCcEEEEEEC-----CeEEeeeeecCcCCceeeeeEEEEeeC-CCccEEEEE
Q 025708 92 IGLLKVKVVKGINLAIR------DMM-SSDPYVVLRLG-----QQTVQTTIVKSNLNPVWNEELMLSVPQ-EYGPVKLEV 158 (249)
Q Consensus 92 ~g~L~V~v~~a~~L~~~------~~~-~~dpyv~v~l~-----~~~~kT~~~~~t~~P~W~e~f~f~v~~-~~~~L~i~V 158 (249)
..+|.|+|+.+.+++.. +.. ..||||+|.+- ..+.+|++..++.||.|||+|.|.+.. +-..|+|.|
T Consensus 468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V 547 (598)
T PLN02230 468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEV 547 (598)
T ss_pred CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEE
Confidence 46899999999987521 112 47999999983 245789999999999999999999776 346789999
Q ss_pred EecCCCCCCCeeEEEEEechhhhhhhhhc
Q 025708 159 FDHDTFSADDIMGEAEIDIQPLLTSALAF 187 (249)
Q Consensus 159 ~d~~~~~~d~~iG~~~i~l~~l~~~~~~~ 187 (249)
+|+|..+.|+|+|+..+|+..|..+.++.
T Consensus 548 ~d~d~~~~ddfiGQ~~lPv~~Lr~GyR~V 576 (598)
T PLN02230 548 HEHDINEKDDFGGQTCLPVSEIRQGIHAV 576 (598)
T ss_pred EECCCCCCCCEEEEEEcchHHhhCccceE
Confidence 99999889999999999999998876554
No 112
>PLN02222 phosphoinositide phospholipase C 2
Probab=99.21 E-value=2.5e-10 Score=104.84 Aligned_cols=96 Identities=23% Similarity=0.353 Sum_probs=78.8
Q ss_pred eeEEEEEEEEeecCC--CC--CC--C-CCCcEEEEEEC-----CeEEeeeeecCcCCceeeeeEEEEeeC-CCccEEEEE
Q 025708 92 IGLLKVKVVKGINLA--IR--DM--M-SSDPYVVLRLG-----QQTVQTTIVKSNLNPVWNEELMLSVPQ-EYGPVKLEV 158 (249)
Q Consensus 92 ~g~L~V~v~~a~~L~--~~--~~--~-~~dpyv~v~l~-----~~~~kT~~~~~t~~P~W~e~f~f~v~~-~~~~L~i~V 158 (249)
...|+|+|+.+.+++ .. .. . ..||||+|.+. ..+.+|+++.++.||+|+|+|.|.+.. +-..|+|.|
T Consensus 451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V 530 (581)
T PLN02222 451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEV 530 (581)
T ss_pred cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEE
Confidence 467999999998753 11 11 1 57999999993 345799999999999999999999776 346789999
Q ss_pred EecCCCCCCCeeEEEEEechhhhhhhhhc
Q 025708 159 FDHDTFSADDIMGEAEIDIQPLLTSALAF 187 (249)
Q Consensus 159 ~d~~~~~~d~~iG~~~i~l~~l~~~~~~~ 187 (249)
||+|..+.++|||+..+|+..|..+.++.
T Consensus 531 ~d~D~~~~ddfigq~~lPv~~Lr~GyR~V 559 (581)
T PLN02222 531 HEYDMSEKDDFGGQTCLPVWELSQGIRAF 559 (581)
T ss_pred EECCCCCCCcEEEEEEcchhhhhCccceE
Confidence 99998888999999999999998876544
No 113
>PLN02228 Phosphoinositide phospholipase C
Probab=99.18 E-value=4.3e-10 Score=102.96 Aligned_cols=96 Identities=21% Similarity=0.338 Sum_probs=78.5
Q ss_pred eeEEEEEEEEeecCCC---CCC---C-CCCcEEEEEEC-----CeEEeeeeecCcCCcee-eeeEEEEeeC-CCccEEEE
Q 025708 92 IGLLKVKVVKGINLAI---RDM---M-SSDPYVVLRLG-----QQTVQTTIVKSNLNPVW-NEELMLSVPQ-EYGPVKLE 157 (249)
Q Consensus 92 ~g~L~V~v~~a~~L~~---~~~---~-~~dpyv~v~l~-----~~~~kT~~~~~t~~P~W-~e~f~f~v~~-~~~~L~i~ 157 (249)
...|+|+|+.|++|+. .+. . ..||||+|.+. ..+++|+++.++.||.| +|+|.|.+.. +-..|+|.
T Consensus 430 ~~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~ 509 (567)
T PLN02228 430 KTTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFK 509 (567)
T ss_pred CceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEE
Confidence 4579999999998732 111 2 47999999983 24579999999999999 9999999876 34678999
Q ss_pred EEecCCCCCCCeeEEEEEechhhhhhhhhc
Q 025708 158 VFDHDTFSADDIMGEAEIDIQPLLTSALAF 187 (249)
Q Consensus 158 V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~ 187 (249)
|+|+|..+.++|+|+..+|+..|..+.++.
T Consensus 510 V~D~d~~~~d~figq~~lPv~~Lr~GYR~V 539 (567)
T PLN02228 510 VQDYDNDTQNDFAGQTCLPLPELKSGVRAV 539 (567)
T ss_pred EEeCCCCCCCCEEEEEEcchhHhhCCeeEE
Confidence 999998889999999999999998776544
No 114
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.12 E-value=4.7e-10 Score=80.03 Aligned_cols=89 Identities=13% Similarity=0.227 Sum_probs=74.5
Q ss_pred EEEEEEEeecCCCCC---CC-CCCcEEEEEECCe-EEeeeeecCcCCceeeeeEEEEeeCCCccEEEEEEecCCCCCCCe
Q 025708 95 LKVKVVKGINLAIRD---MM-SSDPYVVLRLGQQ-TVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDTFSADDI 169 (249)
Q Consensus 95 L~V~v~~a~~L~~~~---~~-~~dpyv~v~l~~~-~~kT~~~~~t~~P~W~e~f~f~v~~~~~~L~i~V~d~~~~~~d~~ 169 (249)
|+|+|..|+++...+ .. .+||||.+.++.. +.+|++. .||.|||+|.|++. ....+.|+|||... ...-.
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~s---rnd~WnE~F~i~Vd-k~nEiel~VyDk~~-~~~~P 75 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKPS---RNDRWNEDFEIPVE-KNNEEEVIVYDKGG-DQPVP 75 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECCEEEEeccCC---CCCcccceEEEEec-CCcEEEEEEEeCCC-Ceecc
Confidence 689999999998777 33 7899999999876 7888874 79999999999995 46789999999865 35568
Q ss_pred eEEEEEechhhhhhhhhcC
Q 025708 170 MGEAEIDIQPLLTSALAFG 188 (249)
Q Consensus 170 iG~~~i~l~~l~~~~~~~~ 188 (249)
||..-+.|+++..+.+...
T Consensus 76 i~llW~~~sdi~Ee~Rrkk 94 (109)
T cd08689 76 VGLLWLRLSDIAEEIRKKK 94 (109)
T ss_pred eeeehhhHHHHHHHHHHHH
Confidence 9999999999988765553
No 115
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=99.05 E-value=4.3e-11 Score=109.27 Aligned_cols=95 Identities=31% Similarity=0.445 Sum_probs=83.2
Q ss_pred ccceeeeEEEEEEEEeecCCCCCCC-CCCcEEEEEECCe-------EEeeeeecCcCCceeeeeEEEEeeCC-----Ccc
Q 025708 87 GMVEFIGLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQQ-------TVQTTIVKSNLNPVWNEELMLSVPQE-----YGP 153 (249)
Q Consensus 87 ~~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~~-------~~kT~~~~~t~~P~W~e~f~f~v~~~-----~~~ 153 (249)
.|.-....|.|.|+.|+++.+.|.+ .+||||+|.+... .++|+|+.+|+||+|+|+|.|.|+.+ ...
T Consensus 941 ~y~~n~q~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFsVp~e~c~te~Am 1020 (1103)
T KOG1328|consen 941 YYNGNAQTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEFSVPPEPCSTETAM 1020 (1103)
T ss_pred EeeccccchhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhccccchhhhheeeecCccccccccce
Confidence 3444557899999999999999886 8999999999763 47999999999999999999999772 457
Q ss_pred EEEEEEecCCCCCCCeeEEEEEechhhh
Q 025708 154 VKLEVFDHDTFSADDIMGEAEIDIQPLL 181 (249)
Q Consensus 154 L~i~V~d~~~~~~d~~iG~~~i~l~~l~ 181 (249)
|.|+|+|+|-++.+||-|++.+.|.++.
T Consensus 1021 ~~FTVMDHD~L~sNDFaGEA~L~Lg~vp 1048 (1103)
T KOG1328|consen 1021 LHFTVMDHDYLRSNDFAGEAFLELGDVP 1048 (1103)
T ss_pred EEEEeeccceecccccchHHHHhhCCCC
Confidence 9999999999999999999999998874
No 116
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=99.00 E-value=1.6e-09 Score=100.31 Aligned_cols=94 Identities=21% Similarity=0.402 Sum_probs=79.4
Q ss_pred eEEEEEEEEeecCCCCCCCCCCcEEEEEECC-----eE-EeeeeecCcCCceee-eeEEEEeeC-CCccEEEEEEecCCC
Q 025708 93 GLLKVKVVKGINLAIRDMMSSDPYVVLRLGQ-----QT-VQTTIVKSNLNPVWN-EELMLSVPQ-EYGPVKLEVFDHDTF 164 (249)
Q Consensus 93 g~L~V~v~~a~~L~~~~~~~~dpyv~v~l~~-----~~-~kT~~~~~t~~P~W~-e~f~f~v~~-~~~~L~i~V~d~~~~ 164 (249)
..|.|.|+.|++|+..+.+...|||.|.+-+ .+ ++|.++.+++||+|+ |.|+|.|.. .-.-|+|.|||.|.+
T Consensus 1065 ~~lsv~vigaRHL~k~gr~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~eeDmf 1144 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPKLGRSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYEEDMF 1144 (1267)
T ss_pred eEEEEEEeeccccccCCCCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEeccccc
Confidence 6789999999999976666677999999832 34 455667789999999 999999987 446799999999999
Q ss_pred CCCCeeEEEEEechhhhhhhhh
Q 025708 165 SADDIMGEAEIDIQPLLTSALA 186 (249)
Q Consensus 165 ~~d~~iG~~~i~l~~l~~~~~~ 186 (249)
+...|||++..|+..+..+-+.
T Consensus 1145 s~~~FiaqA~yPv~~ik~GfRs 1166 (1267)
T KOG1264|consen 1145 SDPNFLAQATYPVKAIKSGFRS 1166 (1267)
T ss_pred CCcceeeeeecchhhhhcccee
Confidence 9889999999999999776543
No 117
>smart00105 ArfGap Putative GTP-ase activating proteins for the small GTPase, ARF. Putative zinc fingers with GTPase activating proteins (GAPs) towards the small GTPase, Arf. The GAP of ARD1 stimulates GTPase hydrolysis for ARD1 but not ARFs.
Probab=98.97 E-value=4.5e-10 Score=82.53 Aligned_cols=51 Identities=31% Similarity=0.521 Sum_probs=44.7
Q ss_pred ccccCchHHHHHHhhcCCCCCCCCCCCCCHHHHHHHHHHHhhcccccCCcc
Q 025708 2 IEVGGNSSANAIYEAFIPEGVSKPGPDSSHEIRSKFIRSKYELQEFLKPSL 52 (249)
Q Consensus 2 ~~~~gn~~~n~~~e~~~p~~~~kp~~~~~~~~~e~~ir~ky~~~~f~~~~~ 52 (249)
++.+||..+|++||+++|....+|.+.+..+.+++||++||++++|+.+..
T Consensus 59 ~~~~GN~~~n~~~e~~~~~~~~~~~~~~~~~~~~~fI~~KY~~k~f~~~~~ 109 (112)
T smart00105 59 LQKGGNENANSIWESNLDDFSLKPPDSDDQQKYESFIAAKYEEKLFVPPES 109 (112)
T ss_pred HHHhhhHHHHHHHHhhCCccccCCCCCchHHHHHHHHHHHHHhhhcccccc
Confidence 456799999999999999887777777778899999999999999987654
No 118
>PLN02352 phospholipase D epsilon
Probab=98.94 E-value=1.2e-08 Score=95.81 Aligned_cols=118 Identities=17% Similarity=0.337 Sum_probs=88.5
Q ss_pred eeeEEEEEEEEeecCCCC----CC-C-CCCcEEEEEECCeE-EeeeeecCcCCceeeeeEEEEeeCCC-ccEEEEEEecC
Q 025708 91 FIGLLKVKVVKGINLAIR----DM-M-SSDPYVVLRLGQQT-VQTTIVKSNLNPVWNEELMLSVPQEY-GPVKLEVFDHD 162 (249)
Q Consensus 91 ~~g~L~V~v~~a~~L~~~----~~-~-~~dpyv~v~l~~~~-~kT~~~~~t~~P~W~e~f~f~v~~~~-~~L~i~V~d~~ 162 (249)
.-|+|.++|.+|+-+... .. + ..||||.|.+++.+ .+| .+..||+|+|.|.+.+.... ..+.|+|-|
T Consensus 8 lhg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~-- 82 (758)
T PLN02352 8 FHGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAKT---SHEYDRVWNQTFQILCAHPLDSTITITLKT-- 82 (758)
T ss_pred cccceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEEecC---CCCCCCccccceeEEeeeecCCcEEEEEec--
Confidence 458999999999843322 11 1 33999999998765 577 56679999999999998865 689999988
Q ss_pred CCCCCCeeEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEecCCCccccCCceeeeCCeEEEEEEEEeccccCceEEEEE
Q 025708 163 TFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVESGELELEL 242 (249)
Q Consensus 163 ~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~g~~~~~~~l~l~~~~~G~i~l~l 242 (249)
.-.+||.+.||+.+++.+ ...+++||++.+. +|+. + ...+|+++|
T Consensus 83 ---~~~~ig~~~~p~~~~~~g-----------~~~~~~~~~~~~~-----------~~~p-------~---~~~~~~~~~ 127 (758)
T PLN02352 83 ---KCSILGRFHIQAHQIVTE-----------ASFINGFFPLIME-----------NGKP-------N---PELKLRFML 127 (758)
T ss_pred ---CCeEEEEEEEEHHHhhCC-----------CcccceEEEcccC-----------CCCC-------C---CCCEEEEEE
Confidence 257999999999999653 2348899995442 2332 1 226999999
Q ss_pred EEEeCC
Q 025708 243 EWMPLD 248 (249)
Q Consensus 243 ~~~~~~ 248 (249)
+|.|+.
T Consensus 128 ~~~~~~ 133 (758)
T PLN02352 128 WFRPAE 133 (758)
T ss_pred EEEEhh
Confidence 999975
No 119
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=98.93 E-value=8.9e-10 Score=105.24 Aligned_cols=103 Identities=21% Similarity=0.339 Sum_probs=84.8
Q ss_pred eeeEEEEEEEEeecCCCCCC-CCCCcEEEEEECC-----eEEeeeeecCcCCceeeeeEEEE-eeC---CCccEEEEEEe
Q 025708 91 FIGLLKVKVVKGINLAIRDM-MSSDPYVVLRLGQ-----QTVQTTIVKSNLNPVWNEELMLS-VPQ---EYGPVKLEVFD 160 (249)
Q Consensus 91 ~~g~L~V~v~~a~~L~~~~~-~~~dpyv~v~l~~-----~~~kT~~~~~t~~P~W~e~f~f~-v~~---~~~~L~i~V~d 160 (249)
..|+|+|.|.-|++|+.... ..+||||++++.. .++||+++++|.+|.|||.+.+. .+. ..+.|.++||.
T Consensus 1522 ~~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls 1601 (1639)
T KOG0905|consen 1522 NNGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLS 1601 (1639)
T ss_pred cCceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeeeec
Confidence 37999999999999965444 4899999999943 35899999999999999999988 333 34789999999
Q ss_pred cCCCCCCCeeEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEecC
Q 025708 161 HDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSD 205 (249)
Q Consensus 161 ~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~~ 205 (249)
.+.+..+.++|.+.|+|.++-... ...+||++.
T Consensus 1602 ~~~~~en~~lg~v~i~L~~~~l~k------------E~~~Wy~lg 1634 (1639)
T KOG0905|consen 1602 NGGLLENVFLGGVNIPLLKVDLLK------------ESVGWYNLG 1634 (1639)
T ss_pred ccceeeeeeeeeeecchhhcchhh------------hhcceeecc
Confidence 999988999999999999884332 334899854
No 120
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.90 E-value=2.8e-10 Score=104.05 Aligned_cols=123 Identities=26% Similarity=0.500 Sum_probs=94.2
Q ss_pred eeeEEEEEEEEeecCCCCCCC-CCCcEEEEEECC-------------e------------------EEeeeeecCcCCce
Q 025708 91 FIGLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQ-------------Q------------------TVQTTIVKSNLNPV 138 (249)
Q Consensus 91 ~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~-------------~------------------~~kT~~~~~t~~P~ 138 (249)
+...|.|.+.+|++|..++.+ .+|||+.+.+.. + .+-|.+.++|+||.
T Consensus 112 P~~~l~is~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~~TLnPk 191 (1103)
T KOG1328|consen 112 PSVLLNISLLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKKKTLNPK 191 (1103)
T ss_pred CcHHHHHHHHHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhcccccccCCcc
Confidence 445677889999999999886 899999988711 0 13477888999999
Q ss_pred eeeeEEEEeeC-CCccEEEEEEecCCC---------------------------------C---CCCeeEEEEEechhhh
Q 025708 139 WNEELMLSVPQ-EYGPVKLEVFDHDTF---------------------------------S---ADDIMGEAEIDIQPLL 181 (249)
Q Consensus 139 W~e~f~f~v~~-~~~~L~i~V~d~~~~---------------------------------~---~d~~iG~~~i~l~~l~ 181 (249)
|+|.|.|.|.+ ....+.+.+||+|.- + .|||+|++.|||.++.
T Consensus 192 W~EkF~F~IeDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNipl~EiP 271 (1103)
T KOG1328|consen 192 WSEKFQFTIEDVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIPLAEIP 271 (1103)
T ss_pred hhhheeeehhccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccccchhcCC
Confidence 99999999988 567899999999731 2 3899999999999995
Q ss_pred hhhhhcCCCCCcCCeeeeeeEecCCCccccCCceeeeCCeEEEEEEEEec
Q 025708 182 TSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQ 231 (249)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~g~~~~~~~l~l~ 231 (249)
.. .++.||.+.. .+.-+-..|.++..+||.-.
T Consensus 272 ~~-------------Gld~WFkLep-----RS~~S~VqG~~~LklwLsT~ 303 (1103)
T KOG1328|consen 272 PD-------------GLDQWFKLEP-----RSDKSKVQGQVKLKLWLSTK 303 (1103)
T ss_pred cc-------------hHHHHhccCc-----ccccccccceEEEEEEEeee
Confidence 44 3788997544 34445566777666666443
No 121
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=98.90 E-value=1.2e-09 Score=97.72 Aligned_cols=52 Identities=40% Similarity=0.629 Sum_probs=46.1
Q ss_pred cccCchHHHHHHhhcCCCCCCCCCCCCCHHHHHHHHHHHhhcccccCCccccC
Q 025708 3 EVGGNSSANAIYEAFIPEGVSKPGPDSSHEIRSKFIRSKYELQEFLKPSLRIA 55 (249)
Q Consensus 3 ~~~gn~~~n~~~e~~~p~~~~kp~~~~~~~~~e~~ir~ky~~~~f~~~~~~~~ 55 (249)
..+||+.||++||..+ .+..||+++++++++|+|||+||+.+.|..|.....
T Consensus 570 ~aiGN~~AN~vWE~~~-~G~~KPs~~s~REEkErwIr~KYeqklFLaPl~~te 621 (749)
T KOG0705|consen 570 SAIGNDLANSVWEGSS-QGQTKPSPDSSREEKERWIRAKYEQKLFLAPLPCTE 621 (749)
T ss_pred HHhhhhHHHHHhhhhc-cCCcCCCccccHHHHHHHHHHHHHHHhhcCCCCCCC
Confidence 3469999999999966 788999999999999999999999999998765433
No 122
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=98.81 E-value=3.7e-09 Score=99.78 Aligned_cols=117 Identities=26% Similarity=0.358 Sum_probs=94.5
Q ss_pred cccccccccccccccCCC-----Cccc-----ccc-ceeeeEEEEEEEEeecCCCCCCC-CCCcEEEEEECCeE--Eeee
Q 025708 64 QSSFSRKIIDSFRSTNSS-----QKKD-----VGM-VEFIGLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQQT--VQTT 129 (249)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~-----~~~~-----~~~-~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~~~--~kT~ 129 (249)
.....|.+++.++++..+ +... ... .+....++|+|++|.+|.+.|.+ .+|||+++.+|++. -++.
T Consensus 573 e~~Ivg~fKgl~rIyp~~~~~~~p~~pr~~~~~~~~~pi~~LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk~~~~d~~~ 652 (1105)
T KOG1326|consen 573 EQQIVGEFKGLFRIYPVPRNPSSPAPPRHFLDLPKEEPIKCLVRVYVVEAFSLQPSDGNGDADPYVKLLLGKKRTLDRAH 652 (1105)
T ss_pred ccchhhhhhcceeeecCCCccCCCCChhhhhcccccCcceeeEEEEEEEeeeccccCCCCCcCceeeeeeccchhhhhhh
Confidence 345667888888877654 1111 111 23446788999999999999986 99999999999877 5788
Q ss_pred eecCcCCceeeeeEEEEeeC-CCccEEEEEEecCCCCCCCeeEEEEEechhh
Q 025708 130 IVKSNLNPVWNEELMLSVPQ-EYGPVKLEVFDHDTFSADDIMGEAEIDIQPL 180 (249)
Q Consensus 130 ~~~~t~~P~W~e~f~f~v~~-~~~~L~i~V~d~~~~~~d~~iG~~~i~l~~l 180 (249)
.+.+|+||+|++.|.+.+.. ....|.++|||+|.++.|+.||+..++|++-
T Consensus 653 yip~tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~~~~d~~iget~iDLEnR 704 (1105)
T KOG1326|consen 653 YIPNTLNPVFGKMFELECLLPFEKDLIVEVYDHDLEAQDEKIGETTIDLENR 704 (1105)
T ss_pred cCcCCCCcHHHHHHHhhcccchhhcceeEEEEeecccccchhhceehhhhhc
Confidence 89999999999999988765 4578999999999999999999999999864
No 123
>PF01412 ArfGap: Putative GTPase activating protein for Arf; InterPro: IPR001164 This entry describes a family of small GTPase activating proteins, for example ARF1-directed GTPase-activating protein, the cycle control GTPase activating protein (GAP) GCS1 which is important for the regulation of the ADP ribosylation factor ARF, a member of the Ras superfamily of GTP-binding proteins []. The GTP-bound form of ARF is essential for the maintenance of normal Golgi morphology, it participates in recruitment of coat proteins which are required for budding and fission of membranes. Before the fusion with an acceptor compartment the membrane must be uncoated. This step required the hydrolysis of GTP associated to ARF. These proteins contain a characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) which displays some similarity to the C4-type GATA zinc finger. The ARFGAP domain display no obvious similarity to other GAP proteins. The 3D structure of the ARFGAP domain of the PYK2-associated protein beta has been solved []. It consists of a three-stranded beta-sheet surrounded by 5 alpha helices. The domain is organised around a central zinc atom which is coordinated by 4 cysteines. The ARFGAP domain is clearly unrelated to the other GAP proteins structures which are exclusively helical. Classical GAP proteins accelerate GTPase activity by supplying an arginine finger to the active site. The crystal structure of ARFGAP bound to ARF revealed that the ARFGAP domain does not supply an arginine to the active site which suggests a more indirect role of the ARFGAP domain in the GTPase hydrolysis []. The Rev protein of human immunodeficiency virus type 1 (HIV-1) facilitates nuclear export of unspliced and partly-spliced viral RNAs []. Rev contains an RNA-binding domain and an effector domain; the latter is believed to interact with a cellular cofactor required for the Rev response and hence HIV-1 replication. Human Rev interacting protein (hRIP) specifically interacts with the Rev effector. The amino acid sequence of hRIP is characterised by an N-terminal, C-4 class zinc finger motif.; GO: 0008060 ARF GTPase activator activity, 0008270 zinc ion binding, 0032312 regulation of ARF GTPase activity; PDB: 2P57_A 2CRR_A 2OWA_B 3O47_B 3DWD_A 1DCQ_A 2CRW_A 3MDB_D 3FEH_A 3LJU_X ....
Probab=98.68 E-value=6.5e-09 Score=76.91 Aligned_cols=46 Identities=43% Similarity=0.681 Sum_probs=40.4
Q ss_pred cccCchHHHHHHhhcCCCCCCCCCCCCCHHHHHHHHHHHhhcccccC
Q 025708 3 EVGGNSSANAIYEAFIPEGVSKPGPDSSHEIRSKFIRSKYELQEFLK 49 (249)
Q Consensus 3 ~~~gn~~~n~~~e~~~p~~~~kp~~~~~~~~~e~~ir~ky~~~~f~~ 49 (249)
..+||..+|++||++ +....+|.++++.+.+++||++||+.++|+.
T Consensus 70 ~~~GN~~~n~~~e~~-~~~~~~~~~~~~~~~~~~fI~~KY~~k~f~~ 115 (116)
T PF01412_consen 70 REGGNKRANSIWEAN-SPPPKKPPPSSDQEKREQFIRAKYVEKAFIS 115 (116)
T ss_dssp HHSHHHHHHHHHTTT-STTTTTHCTTSHHHHHHHHHHHHHTTHTTS-
T ss_pred HHHChHHHHHHHHcC-CCCCCCCCCCCcHHHHHHHHHHHHHhhhhcc
Confidence 456999999999999 4556788899999999999999999999975
No 124
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=98.63 E-value=1.3e-07 Score=69.76 Aligned_cols=98 Identities=23% Similarity=0.414 Sum_probs=74.9
Q ss_pred EEEEEEEeecCCCCC---------CC-----CCCcEEEEEE----CCeEEeeeeecCcCCceeeeeEEEEeeC-------
Q 025708 95 LKVKVVKGINLAIRD---------MM-----SSDPYVVLRL----GQQTVQTTIVKSNLNPVWNEELMLSVPQ------- 149 (249)
Q Consensus 95 L~V~v~~a~~L~~~~---------~~-----~~dpyv~v~l----~~~~~kT~~~~~t~~P~W~e~f~f~v~~------- 149 (249)
|.|.|.+|.||+... .. ..++||++.+ +...++|+++.++..|.|+..++|.++-
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~G 80 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSG 80 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCC
Confidence 468888998887321 11 4589999996 3466899999999999999999998762
Q ss_pred ---------CCccEEEEEEecCCC----------CCCCeeEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEe
Q 025708 150 ---------EYGPVKLEVFDHDTF----------SADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLK 203 (249)
Q Consensus 150 ---------~~~~L~i~V~d~~~~----------~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~ 203 (249)
....+.|+||+...- ..|-+||.+.||+.+|+.. ...+.+|||
T Consensus 81 e~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~-----------rsGitGW~p 142 (143)
T cd08683 81 EAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTK-----------RSGITGWYP 142 (143)
T ss_pred ccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhc-----------ccCcccccc
Confidence 135789999997542 2455899999999999754 334778987
No 125
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=98.58 E-value=1.1e-07 Score=87.21 Aligned_cols=95 Identities=17% Similarity=0.275 Sum_probs=72.4
Q ss_pred EEeecCCCCCCCCCCcEEEEEECCeE----EeeeeecCcCCceeeeeEEEEeeCC----------------CccEEEEEE
Q 025708 100 VKGINLAIRDMMSSDPYVVLRLGQQT----VQTTIVKSNLNPVWNEELMLSVPQE----------------YGPVKLEVF 159 (249)
Q Consensus 100 ~~a~~L~~~~~~~~dpyv~v~l~~~~----~kT~~~~~t~~P~W~e~f~f~v~~~----------------~~~L~i~V~ 159 (249)
+.++++-+...+.+|||+.+...+.. .+|++.++|.+|.|+|.|.|.+... -..|++++|
T Consensus 138 L~~r~~~P~~~~~~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~irv~lW 217 (800)
T KOG2059|consen 138 LKTRQGLPIINGQCDPFARVTLCGPSKLKEKKTKVKKKTTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLEIRVDLW 217 (800)
T ss_pred hhhcccCceeCCCCCcceEEeecccchhhccccceeeeccCcchhhheeeeeccccccccchhcCcccCCceeeEEEeec
Confidence 44455555555579999999985533 5999999999999999999988553 235889999
Q ss_pred e-cCCCCCCCeeEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEecCC
Q 025708 160 D-HDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDD 206 (249)
Q Consensus 160 d-~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~~~ 206 (249)
+ .+....++|+|++.+++..+.. ......||-+..
T Consensus 218 ~~~~~~~~~~FlGevrv~v~~~~~------------~s~p~~W~~Lqp 253 (800)
T KOG2059|consen 218 NDLNLVINDVFLGEVRVPVDVLRQ------------KSSPAAWYYLQP 253 (800)
T ss_pred cchhhhhhhhhceeEEeehhhhhh------------ccCccceEEEec
Confidence 8 6666679999999999998852 224568987654
No 126
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.58 E-value=8.1e-08 Score=81.10 Aligned_cols=99 Identities=27% Similarity=0.292 Sum_probs=83.3
Q ss_pred CccccccceeeeEEEEEEEEeecCCCCCCC-CCCcEEEEEECC-----eEEeeeeecCcCCceeeeeEEEEeeC---CCc
Q 025708 82 QKKDVGMVEFIGLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQ-----QTVQTTIVKSNLNPVWNEELMLSVPQ---EYG 152 (249)
Q Consensus 82 ~~~~~~~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~-----~~~kT~~~~~t~~P~W~e~f~f~v~~---~~~ 152 (249)
...++.+.....-|.|++++|..|..+|.+ .+||||...+.. .+.+|.+.+++.+|.|+++|.|.+.. ...
T Consensus 222 i~isl~~~s~~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~ 301 (362)
T KOG1013|consen 222 ILISLAYSSTTPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDLAYK 301 (362)
T ss_pred eeeeeccCcCCCceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhccCCccccccccccCCccchhcc
Confidence 345677777788999999999999999987 899999999853 34789999999999999999999877 346
Q ss_pred cEEEEEEecCCCCCCCeeEEEEEechhh
Q 025708 153 PVKLEVFDHDTFSADDIMGEAEIDIQPL 180 (249)
Q Consensus 153 ~L~i~V~d~~~~~~d~~iG~~~i~l~~l 180 (249)
.+.|.|||.+.....+++|-+...+-..
T Consensus 302 kv~lsvgd~~~G~s~d~~GG~~~g~~rr 329 (362)
T KOG1013|consen 302 KVALSVGDYDIGKSNDSIGGSMLGGYRR 329 (362)
T ss_pred eEEEeecccCCCcCccCCCccccccccc
Confidence 7899999999987889999877655544
No 127
>PLN03119 putative ADP-ribosylation factor GTPase-activating protein AGD14; Provisional
Probab=98.54 E-value=7.3e-08 Score=86.62 Aligned_cols=57 Identities=21% Similarity=0.263 Sum_probs=46.1
Q ss_pred ccccCchHHHHHHhhcCCCCCCCCCCCCCHHHHHHHHHHHhhcccccCCccccCCCC
Q 025708 2 IEVGGNSSANAIYEAFIPEGVSKPGPDSSHEIRSKFIRSKYELQEFLKPSLRIASGK 58 (249)
Q Consensus 2 ~~~~gn~~~n~~~e~~~p~~~~kp~~~~~~~~~e~~ir~ky~~~~f~~~~~~~~ss~ 58 (249)
++.+||..||+|||++++....++...++.+.+++|||+||++|+|+.......++.
T Consensus 76 Mk~gGN~~AN~iyeanw~~~~~~~P~~sD~e~lr~FIR~KYVeKRF~~~~~~d~p~~ 132 (648)
T PLN03119 76 LQNGGNQRAREIYLKNWDHQRQRLPENSNAERVREFIKNVYVQKKYAGANDADKPSK 132 (648)
T ss_pred HHHhchHHHHHHHHhhcccccCCCCCCccHHHHHHHHHHHHhhhhccCcCCCCCCcc
Confidence 345799999999999999876666666677788899999999999998765544443
No 128
>PLN03131 hypothetical protein; Provisional
Probab=98.44 E-value=1.6e-07 Score=85.15 Aligned_cols=54 Identities=19% Similarity=0.220 Sum_probs=44.0
Q ss_pred ccccCchHHHHHHhhcCCCCCCCCCCCCCHHHHHHHHHHHhhcccccCCccccC
Q 025708 2 IEVGGNSSANAIYEAFIPEGVSKPGPDSSHEIRSKFIRSKYELQEFLKPSLRIA 55 (249)
Q Consensus 2 ~~~~gn~~~n~~~e~~~p~~~~kp~~~~~~~~~e~~ir~ky~~~~f~~~~~~~~ 55 (249)
++.+||..||+|||++++....++..++..+.++.|||+||++|+|+.+.....
T Consensus 76 Mk~gGN~~AN~iyeanwd~~r~~lP~~sd~ekrr~FIR~KYVeKRFa~~~s~d~ 129 (705)
T PLN03131 76 LQNGGNQRAREIYLKDWDQQRQRLPDNSKVDKIREFIKDIYVDKKYAGGKTHDK 129 (705)
T ss_pred HHHhccHHHHHHHHhhcccccCCCCCCccHHHHHHHHHHHHhhhhhhcCCCCCC
Confidence 345799999999999998766566566677788999999999999998664433
No 129
>PLN02964 phosphatidylserine decarboxylase
Probab=98.38 E-value=6.3e-07 Score=83.69 Aligned_cols=93 Identities=25% Similarity=0.453 Sum_probs=78.0
Q ss_pred cccceeeeEEEEEEEEeecCCCCCCCCCCcE-EEEEECCeEEeeeeecCcCCceeeeeEEEEeeC-CCccEEEEEEecCC
Q 025708 86 VGMVEFIGLLKVKVVKGINLAIRDMMSSDPY-VVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQ-EYGPVKLEVFDHDT 163 (249)
Q Consensus 86 ~~~~~~~g~L~V~v~~a~~L~~~~~~~~dpy-v~v~l~~~~~kT~~~~~t~~P~W~e~f~f~v~~-~~~~L~i~V~d~~~ 163 (249)
....++.|...+++++|+ ++. .|+| +.+.+|.+.++|.+.++|.||+||+...|.+.. ......|.|||.+.
T Consensus 47 ~~~~~~~~~~~~~~~~~~----~~~--~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (644)
T PLN02964 47 VSAEDFSGIALLTLVGAE----MKF--KDKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFETNR 120 (644)
T ss_pred eecccccCeEEEEeehhh----hcc--CCcEEEEEEecceeeeeccccccCCcccchhhceEeccCCcceEEEEEEecCC
Confidence 456678999999999997 332 3885 556779999999999999999999999999876 34457999999999
Q ss_pred CCCCCeeEEEEEechhhhhhh
Q 025708 164 FSADDIMGEAEIDIQPLLTSA 184 (249)
Q Consensus 164 ~~~d~~iG~~~i~l~~l~~~~ 184 (249)
++.++++|.++++|..+....
T Consensus 121 ~s~n~lv~~~e~~~t~f~~kq 141 (644)
T PLN02964 121 LSKNTLVGYCELDLFDFVTQE 141 (644)
T ss_pred CCHHHhhhheeecHhhccHHH
Confidence 999999999999988776553
No 130
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.32 E-value=7.8e-08 Score=81.18 Aligned_cols=100 Identities=21% Similarity=0.317 Sum_probs=83.0
Q ss_pred ccccceeeeEEEEEEEEeecCCCCCCC-CCCcEEEEEECC-----eEEeeeeecCcCCceeeeeEEEEeeC----CCccE
Q 025708 85 DVGMVEFIGLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQ-----QTVQTTIVKSNLNPVWNEELMLSVPQ----EYGPV 154 (249)
Q Consensus 85 ~~~~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~-----~~~kT~~~~~t~~P~W~e~f~f~v~~----~~~~L 154 (249)
..-|......+.++|.+|++|.+++.. ..|||+++.+.. .+.+|++..+++||.|+|+..+.... ....+
T Consensus 85 ~~~y~~~~~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~i~~~~~~~K~~ 164 (362)
T KOG1013|consen 85 ELLYDSESRMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEGITDDDTHLKVL 164 (362)
T ss_pred hhhhhhhhhhcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceecccccchhhhhhh
Confidence 344566678899999999999999987 899999999954 34788999999999999987776322 34568
Q ss_pred EEEEEecCCCCCCCeeEEEEEechhhhhhh
Q 025708 155 KLEVFDHDTFSADDIMGEAEIDIQPLLTSA 184 (249)
Q Consensus 155 ~i~V~d~~~~~~d~~iG~~~i~l~~l~~~~ 184 (249)
++.|.|.+.+..++++|+..+++..+....
T Consensus 165 Rk~vcdn~~~~~~~sqGq~r~~lkKl~p~q 194 (362)
T KOG1013|consen 165 RKVVCDNDKKTHNESQGQSRVSLKKLKPLQ 194 (362)
T ss_pred heeeccCcccccccCcccchhhhhccChhh
Confidence 899999999999999999999998886544
No 131
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.30 E-value=2.5e-06 Score=77.97 Aligned_cols=112 Identities=18% Similarity=0.274 Sum_probs=89.2
Q ss_pred eEEEEEEEEeecCCCCCCCCCCcEEEEEE-CC------eEEeeeeecCcCCceeeeeEEEEeeCC----CccEEEEEEec
Q 025708 93 GLLKVKVVKGINLAIRDMMSSDPYVVLRL-GQ------QTVQTTIVKSNLNPVWNEELMLSVPQE----YGPVKLEVFDH 161 (249)
Q Consensus 93 g~L~V~v~~a~~L~~~~~~~~dpyv~v~l-~~------~~~kT~~~~~t~~P~W~e~f~f~v~~~----~~~L~i~V~d~ 161 (249)
..++|.|+.|.+|.-...+.--|||.+.+ |+ .++.|++..++..|.+||+|.|.+..+ .-.|.|.|-|+
T Consensus 1125 hkvtvkvvaandlkwqtsgmFrPFVEV~ivGP~lsDKKRK~~TKtKsnnWaPKyNEtF~f~Lg~e~~Pe~YEL~~~VKDY 1204 (1283)
T KOG1011|consen 1125 HKVTVKVVAANDLKWQTSGMFRPFVEVHIVGPHLSDKKRKFSTKTKSNNWAPKYNETFHFFLGNEGGPEHYELQFCVKDY 1204 (1283)
T ss_pred ceEEEEEEecccccchhccccccceEEEEecCcccchhhhccccccCCCcCcccCceeEEEeccCCCCceEEEEEeehhh
Confidence 46889999999998776666689999998 22 347788899999999999999998763 23588999888
Q ss_pred CCCCCCCeeEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEecCCCccccCCcee
Q 025708 162 DTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTIN 216 (249)
Q Consensus 162 ~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~ 216 (249)
--...|..+|.+.++|.++...+ ..+.|+|+..+...+++.+.
T Consensus 1205 CFAReDRvvGl~VlqL~~va~kG------------S~a~W~pLgrrihmDeTGLt 1247 (1283)
T KOG1011|consen 1205 CFAREDRVVGLAVLQLRSVADKG------------SCACWVPLGRRIHMDETGLT 1247 (1283)
T ss_pred eeecccceeeeeeeehhhHhhcC------------ceeEeeeccccccccccchh
Confidence 87767889999999999996543 57789998777555555443
No 132
>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.26 E-value=4.5e-07 Score=77.85 Aligned_cols=110 Identities=19% Similarity=0.315 Sum_probs=88.8
Q ss_pred ccceeeeEEEEEEEEeecCCCCCCC--CCCcEEEEEECC-----eEEeeeeecCcCCceeeeeEEEEeeCCCccEEEEEE
Q 025708 87 GMVEFIGLLKVKVVKGINLAIRDMM--SSDPYVVLRLGQ-----QTVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVF 159 (249)
Q Consensus 87 ~~~~~~g~L~V~v~~a~~L~~~~~~--~~dpyv~v~l~~-----~~~kT~~~~~t~~P~W~e~f~f~v~~~~~~L~i~V~ 159 (249)
......|.|.|.|++|++|..+... .++|||+|++-. .+.+|+...+|++|.+.+...|.-......|.++||
T Consensus 263 ~~~d~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~sp~~k~Lq~tv~ 342 (405)
T KOG2060|consen 263 ALMDSKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQSPPGKYLQGTVW 342 (405)
T ss_pred hhhcccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccCCCccEEEEEEe
Confidence 3445578999999999999877654 789999999833 347899999999999999999998888889999999
Q ss_pred -ecCCCCCCCeeEEEEEechhhhhhhhhcCCCCCcCCeeeeeeEecCCC
Q 025708 160 -DHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDN 207 (249)
Q Consensus 160 -d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~w~~~~~~ 207 (249)
|+.++..+.|+|.+.+-+.+|-. ......+||++...
T Consensus 343 gdygRmd~k~fmg~aqi~l~eL~l-----------s~~~~igwyKlfgs 380 (405)
T KOG2060|consen 343 GDYGRMDHKSFMGVAQIMLDELNL-----------SSSPVIGWYKLFGS 380 (405)
T ss_pred ccccccchHHHhhHHHHHhhhhcc-----------ccccceeeeeccCC
Confidence 56777778899999999888832 22357789987664
No 133
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=98.08 E-value=5.7e-06 Score=56.97 Aligned_cols=86 Identities=12% Similarity=0.171 Sum_probs=66.2
Q ss_pred EEEEEEeecCCCCCCC--CCCcEEEEEE--C-CeEEeeeeecCcCCceeeeeEEEEeeC---CCccEEEEEEecCCCCCC
Q 025708 96 KVKVVKGINLAIRDMM--SSDPYVVLRL--G-QQTVQTTIVKSNLNPVWNEELMLSVPQ---EYGPVKLEVFDHDTFSAD 167 (249)
Q Consensus 96 ~V~v~~a~~L~~~~~~--~~dpyv~v~l--~-~~~~kT~~~~~t~~P~W~e~f~f~v~~---~~~~L~i~V~d~~~~~~d 167 (249)
-|+++.|++|.-.... .+.-|++--+ . ...+||...+...||+|.|+|.|.+.. ..-.|.|.|+.. ..+.
T Consensus 2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~~--~~RK 79 (103)
T cd08684 2 WITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQTQ--TPRK 79 (103)
T ss_pred EEEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeecc--CCcc
Confidence 3788999999765543 4455766444 3 345899999999999999999999765 445788999983 3477
Q ss_pred CeeEEEEEechhhhhh
Q 025708 168 DIMGEAEIDIQPLLTS 183 (249)
Q Consensus 168 ~~iG~~~i~l~~l~~~ 183 (249)
+.||.+.+.|+++..+
T Consensus 80 e~iG~~sL~l~s~gee 95 (103)
T cd08684 80 RTIGECSLSLRTLSTQ 95 (103)
T ss_pred ceeeEEEeecccCCHH
Confidence 8999999999998554
No 134
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=97.75 E-value=4.6e-06 Score=79.44 Aligned_cols=88 Identities=20% Similarity=0.331 Sum_probs=74.1
Q ss_pred eEEEEEEEEeecCCCCCCC-CCCcEEEEEECCeEEeeeeecCcCCceeeeeEEEEeeC----------CCccEEEEEEec
Q 025708 93 GLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQ----------EYGPVKLEVFDH 161 (249)
Q Consensus 93 g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~~~~kT~~~~~t~~P~W~e~f~f~v~~----------~~~~L~i~V~d~ 161 (249)
-.++++|.+|+.|...+.. .+|||+.+.+.++.+.|.++.+|++|.|+++..|.-.. ....+.|+|||.
T Consensus 206 ~~lR~yiyQar~L~a~dk~~~sdp~a~v~f~~qs~~T~~v~~tl~ptwdq~~~f~~~ei~ge~~~~~~~ppi~v~e~yd~ 285 (1105)
T KOG1326|consen 206 SPLRSYIYQARALGAPDKDDESDPDAAVEFCGQSKETEVVPGTLNPTWDQTIIFDEVEIYGEAHLVLKNPPIRVFEVYDL 285 (1105)
T ss_pred hhhHHHHHHHHhhcCCCcccCCCchhhhhcccccceeEeecCcCCCCccceeeccceeecCccchhhcCCCeEEEEeehh
Confidence 4577888999999998876 89999999999999999999999999999999986211 124578999999
Q ss_pred CCCCCCCeeEEEEEechhh
Q 025708 162 DTFSADDIMGEAEIDIQPL 180 (249)
Q Consensus 162 ~~~~~d~~iG~~~i~l~~l 180 (249)
++.+.++|+|+......-.
T Consensus 286 dr~g~~ef~gr~~~~p~V~ 304 (1105)
T KOG1326|consen 286 DRSGINEFKGRKKQRPYVM 304 (1105)
T ss_pred hhhchHHhhcccccceEEE
Confidence 9999999999987654433
No 135
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=97.71 E-value=2.2e-05 Score=68.42 Aligned_cols=92 Identities=22% Similarity=0.390 Sum_probs=71.9
Q ss_pred eEEEEEEEEeecCCCCCCC-CCCcEEEEEE-----CCeEEeeeeecCcCCceeeeeEEEEeeC---C---------CccE
Q 025708 93 GLLKVKVVKGINLAIRDMM-SSDPYVVLRL-----GQQTVQTTIVKSNLNPVWNEELMLSVPQ---E---------YGPV 154 (249)
Q Consensus 93 g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l-----~~~~~kT~~~~~t~~P~W~e~f~f~v~~---~---------~~~L 154 (249)
..|.+.|+++.+++..... ..|-|+.+.+ ..++.+|.+++.|.+|.|+|.|.+.+.. . ...+
T Consensus 367 ~elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~g~ 446 (523)
T KOG3837|consen 367 QELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRLGK 446 (523)
T ss_pred hHhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhcCe
Confidence 4577888888888765432 5678998887 2356789999999999999999998866 1 2468
Q ss_pred EEEEEecCCC-CCCCeeEEEEEechhhhhhh
Q 025708 155 KLEVFDHDTF-SADDIMGEAEIDIQPLLTSA 184 (249)
Q Consensus 155 ~i~V~d~~~~-~~d~~iG~~~i~l~~l~~~~ 184 (249)
+|++|++..| .+|.++|.+.+.|..|....
T Consensus 447 kfeifhkggf~rSdkl~gt~nikle~Len~c 477 (523)
T KOG3837|consen 447 KFEIFHKGGFNRSDKLTGTGNIKLEILENMC 477 (523)
T ss_pred eEEEeeccccccccceeceeeeeehhhhccc
Confidence 9999998865 45789999999999884443
No 136
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=97.46 E-value=0.00034 Score=63.60 Aligned_cols=83 Identities=27% Similarity=0.500 Sum_probs=66.6
Q ss_pred EEEeecCCCCCCC-CCCcEEEEEEC--C----eEEeeeeecCcCCceeeeeEEEEeeC-----CCccEEEEEEecCCCCC
Q 025708 99 VVKGINLAIRDMM-SSDPYVVLRLG--Q----QTVQTTIVKSNLNPVWNEELMLSVPQ-----EYGPVKLEVFDHDTFSA 166 (249)
Q Consensus 99 v~~a~~L~~~~~~-~~dpyv~v~l~--~----~~~kT~~~~~t~~P~W~e~f~f~v~~-----~~~~L~i~V~d~~~~~~ 166 (249)
..+|++|..++.. ++|||..+.-. . ..++|++++++++|.|.+. .+.... ....+.+.+||++..++
T Consensus 142 ~~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~~-~i~~~~l~~~~~~~~~~i~~~d~~~~~~ 220 (529)
T KOG1327|consen 142 SFRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAPF-SISLQSLCSKDGNRPIQIECYDYDSNGK 220 (529)
T ss_pred eeeeeecCcccccccCCcceEEEEecCCCceeeccccceeccCCCCccccc-ccchhhhcccCCCCceEEEEeccCCCCC
Confidence 3567888888887 99999998752 2 2379999999999999873 443322 35789999999999999
Q ss_pred CCeeEEEEEechhhhh
Q 025708 167 DDIMGEAEIDIQPLLT 182 (249)
Q Consensus 167 d~~iG~~~i~l~~l~~ 182 (249)
+++||.+..++..+..
T Consensus 221 ~~~ig~~~tt~~~~~~ 236 (529)
T KOG1327|consen 221 HDLIGKFQTTLSELQE 236 (529)
T ss_pred cCceeEecccHHHhcc
Confidence 9999999999998854
No 137
>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]
Probab=97.18 E-value=0.00011 Score=65.50 Aligned_cols=53 Identities=30% Similarity=0.495 Sum_probs=44.0
Q ss_pred cccCchHHHHHHhhcCCC------CCCCCCCCCCHH-HHHHHHHHHhhcccccC-CccccC
Q 025708 3 EVGGNSSANAIYEAFIPE------GVSKPGPDSSHE-IRSKFIRSKYELQEFLK-PSLRIA 55 (249)
Q Consensus 3 ~~~gn~~~n~~~e~~~p~------~~~kp~~~~~~~-~~e~~ir~ky~~~~f~~-~~~~~~ 55 (249)
....|..||+|||+.|=+ +++||+|.+.-+ .+++|||+||+...|.. ++++..
T Consensus 65 ~tLn~~gaNsIWEh~Lld~st~~sg~rk~~pqD~~Hp~K~eFIkaKy~~LtFv~~~~~rDd 125 (669)
T KOG0818|consen 65 ETLNNNGANSIWEHSLLDPATIMSGRRKANPQDKVHPNKAEFIRAKYQMLAFVHRLPCRDD 125 (669)
T ss_pred HHHHhcCcchhhhhhccCchhhhcccCCCCCcCCCCccHHHHHHHHHHheeeeccCCCCCc
Confidence 344688899999999864 788999999888 99999999999999997 444433
No 138
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]
Probab=97.02 E-value=0.00027 Score=68.00 Aligned_cols=53 Identities=36% Similarity=0.509 Sum_probs=46.6
Q ss_pred cccCchHHHHHHhhcCCCC-CCCCCCCCCHHHHHHHHHHHhhcccccCCccccC
Q 025708 3 EVGGNSSANAIYEAFIPEG-VSKPGPDSSHEIRSKFIRSKYELQEFLKPSLRIA 55 (249)
Q Consensus 3 ~~~gn~~~n~~~e~~~p~~-~~kp~~~~~~~~~e~~ir~ky~~~~f~~~~~~~~ 55 (249)
...||..+|.|||+.||+. ..+|++.+.+..|+.||++||.++.|........
T Consensus 483 ~~lgn~~~N~i~e~~l~~~~~~~~~~~~~~~~r~~~i~~kyve~~F~~k~~~~~ 536 (785)
T KOG0521|consen 483 KNLGNKYVNEIYEALLPSYDSSKPTASSSRQAREAWIKAKYVERRFSVKEPQIK 536 (785)
T ss_pred HHhCcchhhhhhhcccccccccCCCCccchhhhhHhhhcccceeeEeecccchh
Confidence 3469999999999999975 7899999999999999999999999997665543
No 139
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=96.96 E-value=0.0083 Score=47.48 Aligned_cols=88 Identities=18% Similarity=0.254 Sum_probs=62.3
Q ss_pred eeEEEEEEEEeecCCCCCCCCCCcEEEEEE--CCeE----EeeeeecCcCCceeeeeEEEEeeC----CCccEEEEEEec
Q 025708 92 IGLLKVKVVKGINLAIRDMMSSDPYVVLRL--GQQT----VQTTIVKSNLNPVWNEELMLSVPQ----EYGPVKLEVFDH 161 (249)
Q Consensus 92 ~g~L~V~v~~a~~L~~~~~~~~dpyv~v~l--~~~~----~kT~~~~~t~~P~W~e~f~f~v~~----~~~~L~i~V~d~ 161 (249)
...+.|+|+.+.+|...+ ...+-||.+.+ |.+. ..|+.+.....+.|||.+.|++.- ....|.|+||+.
T Consensus 7 ~~~f~i~i~~~~~~~~~~-~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~ 85 (173)
T cd08693 7 EEKFSITLHKISNLNAAE-RTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEV 85 (173)
T ss_pred CCCEEEEEEEeccCccCC-CCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEe
Confidence 346899999999998621 24566777755 5443 456555556779999999998654 246799999986
Q ss_pred CCCC----------------CCCeeEEEEEechhh
Q 025708 162 DTFS----------------ADDIMGEAEIDIQPL 180 (249)
Q Consensus 162 ~~~~----------------~d~~iG~~~i~l~~l 180 (249)
.... .+..||.+.++|-+.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd~ 120 (173)
T cd08693 86 SKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFDY 120 (173)
T ss_pred cccccccccccccccccccCcceEEEEEeEEEEcc
Confidence 5321 246899999998764
No 140
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=96.91 E-value=0.011 Score=46.13 Aligned_cols=86 Identities=20% Similarity=0.242 Sum_probs=61.1
Q ss_pred eeEEEEEEEEeecCCCCCCCCCCcEEEEEE--CCeE----EeeeeecCcCCceeeeeEEEEeeC----CCccEEEEEEec
Q 025708 92 IGLLKVKVVKGINLAIRDMMSSDPYVVLRL--GQQT----VQTTIVKSNLNPVWNEELMLSVPQ----EYGPVKLEVFDH 161 (249)
Q Consensus 92 ~g~L~V~v~~a~~L~~~~~~~~dpyv~v~l--~~~~----~kT~~~~~t~~P~W~e~f~f~v~~----~~~~L~i~V~d~ 161 (249)
...+.|.|+.+.++...+ ..|-||.+.+ |.+. ..|..+.. .++.|||.+.|++.- ....|.|+||+.
T Consensus 7 ~~~~~v~i~~~~~~~~~~--~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~ 83 (158)
T cd08398 7 NSNLRIKILCATYVNVND--IDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSICSV 83 (158)
T ss_pred CCCeEEEEEeeccCCCCC--cCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcccchhcCChhheEEEEEEEE
Confidence 356889999999987653 3578888866 4432 34444443 679999999998754 246799999996
Q ss_pred CCCC----CCCeeEEEEEechhh
Q 025708 162 DTFS----ADDIMGEAEIDIQPL 180 (249)
Q Consensus 162 ~~~~----~d~~iG~~~i~l~~l 180 (249)
..-. ....||.+.++|-+.
T Consensus 84 ~~~~~~k~~~~~iG~~ni~LFd~ 106 (158)
T cd08398 84 KGRKGAKEEHCPLAWGNINLFDY 106 (158)
T ss_pred ecccCCCCceEEEEEEEEEEECC
Confidence 5421 224699999999774
No 141
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=96.91 E-value=0.0021 Score=54.56 Aligned_cols=94 Identities=16% Similarity=0.194 Sum_probs=68.1
Q ss_pred cccceeeeEEEEEEEEeecCCCCCC--C-CCCcEEEEEECCeE-EeeeeecCcCCceeeeeEEEEeeCCCccEEEEEEec
Q 025708 86 VGMVEFIGLLKVKVVKGINLAIRDM--M-SSDPYVVLRLGQQT-VQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDH 161 (249)
Q Consensus 86 ~~~~~~~g~L~V~v~~a~~L~~~~~--~-~~dpyv~v~l~~~~-~kT~~~~~t~~P~W~e~f~f~v~~~~~~L~i~V~d~ 161 (249)
+.....+|.|.++++.+++|..... + ..+-||++..+.+. .+|.+......-.|.|.|..++.. ...+.+-||.|
T Consensus 44 l~~~s~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~drqh~aRt~vrs~~~~f~w~e~F~~Dvv~-~~vl~~lvySW 122 (442)
T KOG1452|consen 44 LRLVSSTGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDRQHPARTRVRSSGPGFAWAEDFKHDVVN-IEVLHYLVYSW 122 (442)
T ss_pred eeeecccceEEEEEecccccccChhccCceeeeeeeeeecccCccccccccCCCCccchhhceeeccc-ceeeeEEEeec
Confidence 3344567999999999999976543 3 67899999987654 577777667777899999998775 35788889998
Q ss_pred CCCCCCCeeEEEEEechhh
Q 025708 162 DTFSADDIMGEAEIDIQPL 180 (249)
Q Consensus 162 ~~~~~d~~iG~~~i~l~~l 180 (249)
+.-.++.+.-..-+.+..+
T Consensus 123 ~pq~RHKLC~~g~l~~~~v 141 (442)
T KOG1452|consen 123 PPQRRHKLCHLGLLEAFVV 141 (442)
T ss_pred Cchhhccccccchhhhhhh
Confidence 8766666543333333333
No 142
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=96.88 E-value=0.0016 Score=62.02 Aligned_cols=89 Identities=21% Similarity=0.402 Sum_probs=69.7
Q ss_pred eeEEEEEEEEeecCCCCCCCCCCcEEEEEECC-------eEEeeeeec-CcCCceeee-eEEEE-ee-CCCccEEEEEEe
Q 025708 92 IGLLKVKVVKGINLAIRDMMSSDPYVVLRLGQ-------QTVQTTIVK-SNLNPVWNE-ELMLS-VP-QEYGPVKLEVFD 160 (249)
Q Consensus 92 ~g~L~V~v~~a~~L~~~~~~~~dpyv~v~l~~-------~~~kT~~~~-~t~~P~W~e-~f~f~-v~-~~~~~L~i~V~d 160 (249)
.+++.|+|+++.-|..+.. ..||.|.+-+ ..++|+++. ++.||+|+| .|.|. |. +.-..|+|.||+
T Consensus 702 A~t~sV~VISgqFLSdrkv---gtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiavye 778 (1189)
T KOG1265|consen 702 AATLSVTVISGQFLSDRKV---GTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAVYE 778 (1189)
T ss_pred EeeEEEEEEeeeecccccc---CceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeeeec
Confidence 4789999999999977665 4899999822 347888766 578999995 57776 32 245689999999
Q ss_pred cCCCCCCCeeEEEEEechhhhhhhhhc
Q 025708 161 HDTFSADDIMGEAEIDIQPLLTSALAF 187 (249)
Q Consensus 161 ~~~~~~d~~iG~~~i~l~~l~~~~~~~ 187 (249)
.+ ..+||+-.+|+..|..+.++.
T Consensus 779 Eg----gK~ig~RIlpvd~l~~GYrhv 801 (1189)
T KOG1265|consen 779 EG----GKFIGQRILPVDGLNAGYRHV 801 (1189)
T ss_pred cC----CceeeeeccchhcccCcceeE
Confidence 65 379999999999998887655
No 143
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=96.88 E-value=0.009 Score=46.35 Aligned_cols=88 Identities=18% Similarity=0.216 Sum_probs=60.9
Q ss_pred eEEEEEEEEeecCCCCCCCCCCcEEEEEE--CCeE----EeeeeecCcCCceeeeeEEEEeeC----CCccEEEEEEecC
Q 025708 93 GLLKVKVVKGINLAIRDMMSSDPYVVLRL--GQQT----VQTTIVKSNLNPVWNEELMLSVPQ----EYGPVKLEVFDHD 162 (249)
Q Consensus 93 g~L~V~v~~a~~L~~~~~~~~dpyv~v~l--~~~~----~kT~~~~~t~~P~W~e~f~f~v~~----~~~~L~i~V~d~~ 162 (249)
..++|.+....++...+....+-||.+.+ |.+. ..|.......++.|||.+.|++.- ....|.|+||+.+
T Consensus 8 ~~~~i~i~~~~~~~~~~~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~~ 87 (156)
T cd08380 8 FNLRIKIHGITNINLLDSEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAVS 87 (156)
T ss_pred CCeEEEEEeeccccccCCCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEEe
Confidence 45778888887776522224567777765 4432 344444444689999999998644 3467999999977
Q ss_pred CCC--CCCeeEEEEEechhh
Q 025708 163 TFS--ADDIMGEAEIDIQPL 180 (249)
Q Consensus 163 ~~~--~d~~iG~~~i~l~~l 180 (249)
..+ .+..||.+.++|-+.
T Consensus 88 ~~~~~~~~~iG~~~~~lFd~ 107 (156)
T cd08380 88 EPGSKKEVPLGWVNVPLFDY 107 (156)
T ss_pred cCCCCcceEEEEEeEEeEcc
Confidence 543 457999999999774
No 144
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=96.76 E-value=0.027 Score=43.49 Aligned_cols=94 Identities=19% Similarity=0.282 Sum_probs=69.0
Q ss_pred eeeeEEEEEEEEeecCCCCCC---C--CCCcEEEEEECCeEEeeeeecCcCCceeeeeEEEEeeCC--------------
Q 025708 90 EFIGLLKVKVVKGINLAIRDM---M--SSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQE-------------- 150 (249)
Q Consensus 90 ~~~g~L~V~v~~a~~L~~~~~---~--~~dpyv~v~l~~~~~kT~~~~~t~~P~W~e~f~f~v~~~-------------- 150 (249)
+....|++.|..++-+-..-. . .+--.+-+.+++++++|+.+..+.+|.|+|.|.|.+...
T Consensus 6 ~~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~ 85 (156)
T PF15627_consen 6 PGRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSI 85 (156)
T ss_pred CCceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEecCCcccccCCCCCCcEEEEecccccccccchhHhhcC
Confidence 345678888888764432111 1 233355566689999999999999999999999998652
Q ss_pred CccEEEEEEecCCCCCCCeeEEEEEechhhhhh
Q 025708 151 YGPVKLEVFDHDTFSADDIMGEAEIDIQPLLTS 183 (249)
Q Consensus 151 ~~~L~i~V~d~~~~~~d~~iG~~~i~l~~l~~~ 183 (249)
..++.+.|..-|..+...++|.-.++...+...
T Consensus 86 ~~pihivli~~d~~~~~~Lv~s~~ldWR~vL~s 118 (156)
T PF15627_consen 86 SDPIHIVLIRTDPSGETTLVGSHFLDWRKVLCS 118 (156)
T ss_pred CCceEEEEEEecCCCceEeeeeceehHHHHhcc
Confidence 246888888877766668999988888887544
No 145
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=96.48 E-value=0.015 Score=45.38 Aligned_cols=69 Identities=19% Similarity=0.264 Sum_probs=50.9
Q ss_pred CCCcEEEEEE--CCeE----EeeeeecCcCCceeeeeEEEEeeC----CCccEEEEEEecCCCCCCCeeEEEEEechhh
Q 025708 112 SSDPYVVLRL--GQQT----VQTTIVKSNLNPVWNEELMLSVPQ----EYGPVKLEVFDHDTFSADDIMGEAEIDIQPL 180 (249)
Q Consensus 112 ~~dpyv~v~l--~~~~----~kT~~~~~t~~P~W~e~f~f~v~~----~~~~L~i~V~d~~~~~~d~~iG~~~i~l~~l 180 (249)
.+|-||.+.+ ++.. ..|..+.-+..+.|||.+.|+|.- ....|.|+||+.+..+....||.+.++|-+.
T Consensus 29 ~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd~ 107 (159)
T cd08397 29 NSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFNK 107 (159)
T ss_pred CCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeECC
Confidence 4577777766 3332 355555556678999999999754 3467999999987655667999999999774
No 146
>COG5347 GTPase-activating protein that regulates ARFs (ADP-ribosylation factors), involved in ARF-mediated vesicular transport [Intracellular trafficking and secretion]
Probab=96.26 E-value=0.0053 Score=53.06 Aligned_cols=49 Identities=37% Similarity=0.624 Sum_probs=39.8
Q ss_pred ccccCchHHHHHHhhcCCCCC-CCCCCCCCHHHHHHHHHHHhhcccccCC
Q 025708 2 IEVGGNSSANAIYEAFIPEGV-SKPGPDSSHEIRSKFIRSKYELQEFLKP 50 (249)
Q Consensus 2 ~~~~gn~~~n~~~e~~~p~~~-~kp~~~~~~~~~e~~ir~ky~~~~f~~~ 50 (249)
++.+||..||.+||.++-... .+.....+...+++||+.||+.++|..-
T Consensus 76 m~~gGN~~a~~~~e~~~~~~~~~~~k~~yd~~v~~~y~~~ky~~~~~~~~ 125 (319)
T COG5347 76 MEVGGNSNANRFYEKNLLDQLLLPIKAKYDSSVAKKYIRKKYELKKFIDD 125 (319)
T ss_pred HHHhcchhhhhHhccCCCcccccccccccCHHHHHHHHHHHHHhhhcccc
Confidence 345899999999999986532 3445666777899999999999999975
No 147
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=96.17 E-value=0.38 Score=36.38 Aligned_cols=90 Identities=18% Similarity=0.273 Sum_probs=60.0
Q ss_pred eeeEEEEEEEEeecCCCCCCCCCCcEEEEEECCeE---Eeeeee-cCcCCceeeeeEEEEeeC---------CCccEEEE
Q 025708 91 FIGLLKVKVVKGINLAIRDMMSSDPYVVLRLGQQT---VQTTIV-KSNLNPVWNEELMLSVPQ---------EYGPVKLE 157 (249)
Q Consensus 91 ~~g~L~V~v~~a~~L~~~~~~~~dpyv~v~l~~~~---~kT~~~-~~t~~P~W~e~f~f~v~~---------~~~~L~i~ 157 (249)
..-.+.|.|.+..+++.. ...-||+...+... ..|... ..+..-.|+|.|.+.+.. ....+.|.
T Consensus 5 ~kf~~~l~i~~l~~~p~~---~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~ 81 (143)
T PF10358_consen 5 VKFQFDLTIHELENLPSS---NGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFS 81 (143)
T ss_pred eeEEEEEEEEEeECcCCC---CCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEE
Confidence 345678899999988862 22345555555543 344333 235567999999998643 13468899
Q ss_pred EEecCCCCCCCeeEEEEEechhhhhh
Q 025708 158 VFDHDTFSADDIMGEAEIDIQPLLTS 183 (249)
Q Consensus 158 V~d~~~~~~d~~iG~~~i~l~~l~~~ 183 (249)
|+....-++...+|.+.|+|.++...
T Consensus 82 v~~~~~~~~k~~lG~~~inLaey~~~ 107 (143)
T PF10358_consen 82 VFEVDGSGKKKVLGKVSINLAEYANE 107 (143)
T ss_pred EEEecCCCccceEEEEEEEHHHhhCc
Confidence 98874323336899999999999653
No 148
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=96.02 E-value=0.14 Score=44.79 Aligned_cols=102 Identities=21% Similarity=0.345 Sum_probs=78.0
Q ss_pred EEEEEEEeecCCCCCCCCCCcEEEEEECCeEEeeeeecCcCCceeeeeEEEEeeC--------CCccEEEEEEecC-CCC
Q 025708 95 LKVKVVKGINLAIRDMMSSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQ--------EYGPVKLEVFDHD-TFS 165 (249)
Q Consensus 95 L~V~v~~a~~L~~~~~~~~dpyv~v~l~~~~~kT~~~~~t~~P~W~e~f~f~v~~--------~~~~L~i~V~d~~-~~~ 165 (249)
+.|.|++|++++... ...-.+...+++....|..+..+-.|.|+..+.-++.. ...+|++++|..+ .-+
T Consensus 2 ivl~i~egr~F~~~~--~~~~vv~a~~ng~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~~~ 79 (340)
T PF12416_consen 2 IVLSILEGRNFPQRP--RHPIVVEAKFNGESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGSTG 79 (340)
T ss_pred EEEEEecccCCCCCC--CccEEEEEEeCCceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCCCC
Confidence 578999999998763 23567888999999999999999999999888777644 3568999999887 445
Q ss_pred CCCeeEEEEEechhh-hhhhhhcCCCCCcCCeeeeeeEecCC
Q 025708 166 ADDIMGEAEIDIQPL-LTSALAFGDPEMFGNMQIGKWLKSDD 206 (249)
Q Consensus 166 ~d~~iG~~~i~l~~l-~~~~~~~~~~~~~~~~~~~~w~~~~~ 206 (249)
..+.||.+.++|... +... .....-..||+|..
T Consensus 80 ~re~iGyv~LdLRsa~~~~~--------~~~~~~~~W~~LL~ 113 (340)
T PF12416_consen 80 KRESIGYVVLDLRSAVVPQE--------KNQKQKPKWYKLLS 113 (340)
T ss_pred cceeccEEEEEccccccccc--------cccccCCCeeEccc
Confidence 678999999999988 1111 11224568998655
No 149
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=95.92 E-value=0.15 Score=35.60 Aligned_cols=63 Identities=17% Similarity=0.284 Sum_probs=47.3
Q ss_pred CCcEEEEEECCeE-EeeeeecCcCCceeeeeEEEEeeCCCccEEEEEEecCCCCCCCeeEEEEEechhh
Q 025708 113 SDPYVVLRLGQQT-VQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDTFSADDIMGEAEIDIQPL 180 (249)
Q Consensus 113 ~dpyv~v~l~~~~-~kT~~~~~t~~P~W~e~f~f~v~~~~~~L~i~V~d~~~~~~d~~iG~~~i~l~~l 180 (249)
.+-.+++.+++.. .+|.-.. -.+..|++.|.|++... +.|.|.||-+|- ..+.|-..+.|++.
T Consensus 9 ~eV~avLklDn~~VgqT~Wk~-~s~q~WDQ~Fti~LdRs-RELEI~VywrD~---RslCav~~lrLEd~ 72 (98)
T cd08687 9 SEVSAVLKLDNTVVGQTQWKP-KSNQAWDQSFTLELERS-RELEIAVYWRDW---RSLCAVKFLKLEDE 72 (98)
T ss_pred cceEEEEEEcCeEEeeccccc-cccccccceeEEEeecc-cEEEEEEEEecc---hhhhhheeeEhhhh
Confidence 4677888887754 4555443 36789999999999874 789999998775 35678788888874
No 150
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=95.88 E-value=0.054 Score=42.73 Aligned_cols=90 Identities=20% Similarity=0.245 Sum_probs=63.3
Q ss_pred eeeEEEEEEEEeecCCCCCCC-CCCcEEEEEE--CCeE----Eeeeeec----CcCCceeeeeEEEEeeC----CCccEE
Q 025708 91 FIGLLKVKVVKGINLAIRDMM-SSDPYVVLRL--GQQT----VQTTIVK----SNLNPVWNEELMLSVPQ----EYGPVK 155 (249)
Q Consensus 91 ~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l--~~~~----~kT~~~~----~t~~P~W~e~f~f~v~~----~~~~L~ 155 (249)
....+.|+|..+.+++..... ..|-||.+.+ |.+. ..|+... -...+.|||.+.|++.- ....|.
T Consensus 6 v~~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~ 85 (171)
T cd04012 6 VTDLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLV 85 (171)
T ss_pred ccccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEE
Confidence 456788999999999876543 5678888866 5443 3443221 12357799999998744 246799
Q ss_pred EEEEecCCCC---------CCCeeEEEEEechhh
Q 025708 156 LEVFDHDTFS---------ADDIMGEAEIDIQPL 180 (249)
Q Consensus 156 i~V~d~~~~~---------~d~~iG~~~i~l~~l 180 (249)
|+||+....+ .+..||.+.++|-+.
T Consensus 86 itl~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~ 119 (171)
T cd04012 86 LTLYGTTSSPDGGSNKQRMGPEELGWVSLPLFDF 119 (171)
T ss_pred EEEEEEecCCccccccccccceEEEEEeEeeEcc
Confidence 9999876543 346999999999774
No 151
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=95.57 E-value=0.13 Score=40.85 Aligned_cols=88 Identities=13% Similarity=0.121 Sum_probs=55.3
Q ss_pred eEEEEEEEEeecCCCCCCCCCCcEEEEEE--CCeE---EeeeeecCcCCceeeeeEEEEeeC----CCccEEEEEEecCC
Q 025708 93 GLLKVKVVKGINLAIRDMMSSDPYVVLRL--GQQT---VQTTIVKSNLNPVWNEELMLSVPQ----EYGPVKLEVFDHDT 163 (249)
Q Consensus 93 g~L~V~v~~a~~L~~~~~~~~dpyv~v~l--~~~~---~kT~~~~~t~~P~W~e~f~f~v~~----~~~~L~i~V~d~~~ 163 (249)
..++|.|..+..+.........-||.+.+ |... .+|....-+.++.|||.+.|++.- ....|.|+||+...
T Consensus 10 ~~friki~~~~~~~~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~~ 89 (178)
T cd08399 10 RKFRVKILGIDIPVLPRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGKA 89 (178)
T ss_pred CCEEEEEEeecccCcCCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEec
Confidence 45677888776332221112335666644 4432 355555556789999999998754 24679999998632
Q ss_pred CC----------------CCCeeEEEEEechhh
Q 025708 164 FS----------------ADDIMGEAEIDIQPL 180 (249)
Q Consensus 164 ~~----------------~d~~iG~~~i~l~~l 180 (249)
.. .+..||.+.+.|-+.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~l~wvn~~LFD~ 122 (178)
T cd08399 90 PALSSKKSAESPSSESKGKHQLLYYVNLLLIDH 122 (178)
T ss_pred CcccccccccccccccccccceEEEEEEEEEcC
Confidence 11 245788899888764
No 152
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=95.56 E-value=0.12 Score=39.40 Aligned_cols=54 Identities=17% Similarity=0.294 Sum_probs=40.7
Q ss_pred eeeeecCc-CCceeeeeEEEEeeC----CCccEEEEEEecCCCCCC----CeeEEEEEechhh
Q 025708 127 QTTIVKSN-LNPVWNEELMLSVPQ----EYGPVKLEVFDHDTFSAD----DIMGEAEIDIQPL 180 (249)
Q Consensus 127 kT~~~~~t-~~P~W~e~f~f~v~~----~~~~L~i~V~d~~~~~~d----~~iG~~~i~l~~l 180 (249)
.|....-+ ..+.|+|.+.|++.- ....|.|+||..+..... ..||.+.++|-+.
T Consensus 23 ~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lFd~ 85 (142)
T PF00792_consen 23 STSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPLFDY 85 (142)
T ss_dssp E-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB-T
T ss_pred eccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEeECC
Confidence 56655555 799999999999754 356899999998765554 6999999999775
No 153
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=94.99 E-value=0.5 Score=37.84 Aligned_cols=54 Identities=19% Similarity=0.351 Sum_probs=42.2
Q ss_pred EEeeeeecCcCCceeeeeEEEEeeC---CCccEEEEEEecCCCCC--CCeeEEEEEech
Q 025708 125 TVQTTIVKSNLNPVWNEELMLSVPQ---EYGPVKLEVFDHDTFSA--DDIMGEAEIDIQ 178 (249)
Q Consensus 125 ~~kT~~~~~t~~P~W~e~f~f~v~~---~~~~L~i~V~d~~~~~~--d~~iG~~~i~l~ 178 (249)
.++|-+...+.+|.|+|++.+.++. ....|.|++++...-.+ ...+|-+-++|-
T Consensus 54 e~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~ 112 (189)
T cd08695 54 EYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPLM 112 (189)
T ss_pred eEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEeec
Confidence 4688899999999999999999877 45789999888543221 257898888884
No 154
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=94.12 E-value=1.1 Score=36.02 Aligned_cols=55 Identities=9% Similarity=0.220 Sum_probs=42.1
Q ss_pred eEEeeeeecCcCCceeeeeEEEEeeC---CCccEEEEEEecCCC-CC---CCeeEEEEEech
Q 025708 124 QTVQTTIVKSNLNPVWNEELMLSVPQ---EYGPVKLEVFDHDTF-SA---DDIMGEAEIDIQ 178 (249)
Q Consensus 124 ~~~kT~~~~~t~~P~W~e~f~f~v~~---~~~~L~i~V~d~~~~-~~---d~~iG~~~i~l~ 178 (249)
..++|-+...+.+|.|+|++.+.++. ....|.|++++...- .+ ...+|-+-++|-
T Consensus 53 se~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~ 114 (196)
T cd08694 53 DEYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM 114 (196)
T ss_pred eeEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence 34788888889999999999999876 467899999885421 11 246888888874
No 155
>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species. Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.
Probab=93.92 E-value=0.99 Score=35.43 Aligned_cols=78 Identities=21% Similarity=0.293 Sum_probs=52.9
Q ss_pred EEEEEEEeecCCCCCCCCCCcEEEEEE----------CCe-EEeeeeecC-----cCCceeeeeEEEEeeC--C--CccE
Q 025708 95 LKVKVVKGINLAIRDMMSSDPYVVLRL----------GQQ-TVQTTIVKS-----NLNPVWNEELMLSVPQ--E--YGPV 154 (249)
Q Consensus 95 L~V~v~~a~~L~~~~~~~~dpyv~v~l----------~~~-~~kT~~~~~-----t~~P~W~e~f~f~v~~--~--~~~L 154 (249)
+.=.|..|.+.. ..+-||+..+ +.. ...|.+... ...-.|+.-|.+.... . -..|
T Consensus 4 v~G~I~~a~~f~-----~~~l~~~y~~~~g~~W~~~~g~~~~G~Tq~~~~~~~~~~~~~~f~~P~d~~~~~~~~~gwP~L 78 (168)
T PF07162_consen 4 VIGEIESAEGFE-----EDNLYCRYQLVHGPDWKLISGLSLEGQTQISKSSSYGNDDVAVFNHPFDLHFKSTNPQGWPQL 78 (168)
T ss_pred EEEEEEEEECCC-----CCCEEEEEEEEeCCCeEECCCCcceEEcceeecCcccCCCceEEeccEEEEEEeCCCCCCceE
Confidence 345677787654 2356888877 123 345555543 3346799888877644 1 2479
Q ss_pred EEEEEecCCCCCCCeeEEEEEec
Q 025708 155 KLEVFDHDTFSADDIMGEAEIDI 177 (249)
Q Consensus 155 ~i~V~d~~~~~~d~~iG~~~i~l 177 (249)
.|+||..|..+++.+.|-..+.|
T Consensus 79 ~l~V~~~D~~gr~~~~GYG~~~l 101 (168)
T PF07162_consen 79 VLQVYSLDSWGRDRVEGYGFCHL 101 (168)
T ss_pred EEEEEEEcccCCeEEeEEeEEEe
Confidence 99999999999999988766665
No 156
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=93.67 E-value=0.29 Score=38.96 Aligned_cols=54 Identities=15% Similarity=0.264 Sum_probs=34.4
Q ss_pred EeeeeecCcCCceeeeeEEEEeeC---CCccEEEEEEecCCCCC---CCeeEEEEEechh
Q 025708 126 VQTTIVKSNLNPVWNEELMLSVPQ---EYGPVKLEVFDHDTFSA---DDIMGEAEIDIQP 179 (249)
Q Consensus 126 ~kT~~~~~t~~P~W~e~f~f~v~~---~~~~L~i~V~d~~~~~~---d~~iG~~~i~l~~ 179 (249)
+.|.+...+.+|.|+|+|.+.++. ....|.|++++...-.. ...+|-+.++|-+
T Consensus 61 ~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 61 YYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred EEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence 567778888999999999999987 45689999998654221 1689999999876
No 157
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=93.43 E-value=1.5 Score=34.44 Aligned_cols=69 Identities=14% Similarity=0.250 Sum_probs=52.7
Q ss_pred CCCcEEEEEECCeE-EeeeeecC--cCCceeeeeEEEEeeCCCccEEEEEEecCCCCCCCeeEEEEEechhhh
Q 025708 112 SSDPYVVLRLGQQT-VQTTIVKS--NLNPVWNEELMLSVPQEYGPVKLEVFDHDTFSADDIMGEAEIDIQPLL 181 (249)
Q Consensus 112 ~~dpyv~v~l~~~~-~kT~~~~~--t~~P~W~e~f~f~v~~~~~~L~i~V~d~~~~~~d~~iG~~~i~l~~l~ 181 (249)
...-|+++.++++. .+|+...- ...=.|+|.|.+.+..-...|.++||.... ..+.+|+.+.+++-...
T Consensus 36 ~~~~~ikl~~N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~~Pesi~l~i~E~~~-~~~~~la~v~vpvP~~~ 107 (168)
T PF15625_consen 36 KTRYYIKLFFNDKEVSRTRSRPLWSDFRVHFNEIFNVQITRWPESIKLEIYEKSG-LSDRLLAEVFVPVPGST 107 (168)
T ss_pred heeEEEEEEECCEEEEeeeeEecCCCeEEeccCEEEEEEecCCCEEEEEEEEccC-ccceEEEEEEeeCCCCc
Confidence 34679999997765 45555443 334567899999998756899999999887 57889999999987653
No 158
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=93.41 E-value=0.4 Score=44.14 Aligned_cols=60 Identities=25% Similarity=0.509 Sum_probs=49.1
Q ss_pred EeeeeecCcCCceeeeeEEEEeeC-CCccEEEEEEecCC----CCCCCeeEEEEEechhhhhhhh
Q 025708 126 VQTTIVKSNLNPVWNEELMLSVPQ-EYGPVKLEVFDHDT----FSADDIMGEAEIDIQPLLTSAL 185 (249)
Q Consensus 126 ~kT~~~~~t~~P~W~e~f~f~v~~-~~~~L~i~V~d~~~----~~~d~~iG~~~i~l~~l~~~~~ 185 (249)
.+|.++.+.+||.|-+.|.+.... ..+.|++.++|-+. +...+|+|++...+..+.....
T Consensus 43 ~rte~i~~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~~ 107 (529)
T KOG1327|consen 43 GRTEVIRNVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSSG 107 (529)
T ss_pred cceeeeeccCCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhhh
Confidence 589999999999999988877554 45789999999664 3567899999999999876543
No 159
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=93.31 E-value=0.75 Score=32.78 Aligned_cols=68 Identities=19% Similarity=0.250 Sum_probs=44.9
Q ss_pred EEEEEEEeecCCCCCCC-CCCcEEEEEE--CCeE----EeeeeecCcCCceeeeeEEEEeeC----CCccEEEEEEecC
Q 025708 95 LKVKVVKGINLAIRDMM-SSDPYVVLRL--GQQT----VQTTIVKSNLNPVWNEELMLSVPQ----EYGPVKLEVFDHD 162 (249)
Q Consensus 95 L~V~v~~a~~L~~~~~~-~~dpyv~v~l--~~~~----~kT~~~~~t~~P~W~e~f~f~v~~----~~~~L~i~V~d~~ 162 (249)
+.+.+..+.+....... ..+-||.+.+ |++. ..|..+.-...+.|||.+.|++.- ....|.|+||+..
T Consensus 13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~ 91 (100)
T smart00142 13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVK 91 (100)
T ss_pred eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEee
Confidence 55666666666554433 3477888876 4432 355555445668999999998654 2467999999854
No 160
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=90.10 E-value=1.4 Score=34.92 Aligned_cols=53 Identities=15% Similarity=0.295 Sum_probs=40.0
Q ss_pred EeeeeecCcCCceeeeeEEEEeeC---CCccEEEEEEecCCC-----CCCCeeEEEEEechh
Q 025708 126 VQTTIVKSNLNPVWNEELMLSVPQ---EYGPVKLEVFDHDTF-----SADDIMGEAEIDIQP 179 (249)
Q Consensus 126 ~kT~~~~~t~~P~W~e~f~f~v~~---~~~~L~i~V~d~~~~-----~~d~~iG~~~i~l~~ 179 (249)
++|-+..+ .+|.|+|+|.+.++. ....|.|++++...- .....+|-+.+||-+
T Consensus 55 ~~sv~~~~-k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~ 115 (178)
T cd08679 55 YTSVVYYH-KNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD 115 (178)
T ss_pred EEEEEEcC-CCCCCceeEEEecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence 44444444 899999999999876 457899999986532 235689999999875
No 161
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=90.03 E-value=3.8 Score=40.06 Aligned_cols=82 Identities=17% Similarity=0.257 Sum_probs=64.4
Q ss_pred CCcEEEEEECCeE-EeeeeecCc-CCceeeeeEEEEeeCCCccEEEEEEecCCCCCCCeeEEEEEechhhhhhhhhcCCC
Q 025708 113 SDPYVVLRLGQQT-VQTTIVKSN-LNPVWNEELMLSVPQEYGPVKLEVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDP 190 (249)
Q Consensus 113 ~dpyv~v~l~~~~-~kT~~~~~t-~~P~W~e~f~f~v~~~~~~L~i~V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~ 190 (249)
.++|+.+.+.... .+|....+. .+|.|.+.|...+......+.+.|-+.+..+...++|.+.++...++.+
T Consensus 138 ~e~Ylt~~l~~~~~~~t~~~~~f~e~s~~~f~~~~~~~h~~g~v~~~~~~~~~~G~s~~w~~v~~s~~~~~~~------- 210 (887)
T KOG1329|consen 138 LENYLTVVLHKARYRRTHVIYEFLENSRWSFSFDIGFAHKAGYVIFRVKGARVPGWSKRWGRVKISFLQYCSG------- 210 (887)
T ss_pred ccchheeeechhhhhchhhhhcccccchhhhhccccccccccEEEEeecCCccccceeEEEEeccchhhhhcc-------
Confidence 3788888886654 567666666 7899999998887777788999998888887678999999999988654
Q ss_pred CCcCCeeeeeeEecCC
Q 025708 191 EMFGNMQIGKWLKSDD 206 (249)
Q Consensus 191 ~~~~~~~~~~w~~~~~ 206 (249)
..++.|++..+
T Consensus 211 -----~~~~~~~~Il~ 221 (887)
T KOG1329|consen 211 -----HRIGGWFPILD 221 (887)
T ss_pred -----ccccceeeeec
Confidence 35677887433
No 162
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=88.59 E-value=2 Score=34.08 Aligned_cols=55 Identities=11% Similarity=0.233 Sum_probs=42.3
Q ss_pred EEeeeeecCcCCceeeeeEEEEeeC---CCccEEEEEEecCCCC------CCCeeEEEEEechh
Q 025708 125 TVQTTIVKSNLNPVWNEELMLSVPQ---EYGPVKLEVFDHDTFS------ADDIMGEAEIDIQP 179 (249)
Q Consensus 125 ~~kT~~~~~t~~P~W~e~f~f~v~~---~~~~L~i~V~d~~~~~------~d~~iG~~~i~l~~ 179 (249)
...|.+...+.+|.|+|++.+.++. ....|.|+.++.+.-. ....+|-+.+||-.
T Consensus 55 ~~~S~V~yHnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL~~ 118 (179)
T cd08696 55 EAYTAVTYHNKSPDFYDEIKIKLPADLTDNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPLLR 118 (179)
T ss_pred eEEEEEEEeCCCCcccceEEEEcCCCCCCCeEEEEEEEEeeccccccCCCccceEEEEEEeeec
Confidence 4678888889999999999999876 4568999999844321 13568988888864
No 163
>KOG2419 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]
Probab=88.58 E-value=0.058 Score=50.19 Aligned_cols=82 Identities=13% Similarity=0.163 Sum_probs=60.0
Q ss_pred cccceeeeEEEEEEEEeecCCCCC--C---CCCCcEEEEEECCeEEeeeeecCcCCceeeeeEEEEeeC--CCccEEEEE
Q 025708 86 VGMVEFIGLLKVKVVKGINLAIRD--M---MSSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQ--EYGPVKLEV 158 (249)
Q Consensus 86 ~~~~~~~g~L~V~v~~a~~L~~~~--~---~~~dpyv~v~l~~~~~kT~~~~~t~~P~W~e~f~f~v~~--~~~~L~i~V 158 (249)
.+..+..|....+++.|.++++.- . ...++++...++.+.++|+....+.+|+|||. .+++.. ....|...|
T Consensus 273 ~~~dd~~gi~ll~lI~a~~~~~i~~~~~~~f~~~~~~itsf~~~~frt~~~~~~e~piyNe~-~~E~~~Fqsn~~l~~ki 351 (975)
T KOG2419|consen 273 HDADDFTGIALLTLIGAEMKYDIVEDVAKLFKDKWLAITSFGEQTFRTEISDDTEKPIYNED-EREDSDFQSNRYLGNKI 351 (975)
T ss_pred cccchhhhhHHHHHhhhhcccchhhhhhhccCCCchheeecchhhhhhhhhccccccccccc-ccccccchhhHHHhhhc
Confidence 345667777778888888876431 1 26789999999999999999999999999997 666554 344566666
Q ss_pred EecCCCCCCC
Q 025708 159 FDHDTFSADD 168 (249)
Q Consensus 159 ~d~~~~~~d~ 168 (249)
.+++.+..++
T Consensus 352 v~~~~~~lnd 361 (975)
T KOG2419|consen 352 VGYCELDLND 361 (975)
T ss_pred cccccccccc
Confidence 6666554444
No 164
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=88.47 E-value=6.3 Score=28.50 Aligned_cols=66 Identities=24% Similarity=0.395 Sum_probs=35.7
Q ss_pred EEEEEEC-CeEEeeeeecCcCCceeeeeEEEEeeCC--------CccEEEEEEecCCCCCCCeeEEEEEechhhhhh
Q 025708 116 YVVLRLG-QQTVQTTIVKSNLNPVWNEELMLSVPQE--------YGPVKLEVFDHDTFSADDIMGEAEIDIQPLLTS 183 (249)
Q Consensus 116 yv~v~l~-~~~~kT~~~~~t~~P~W~e~f~f~v~~~--------~~~L~i~V~d~~~~~~d~~iG~~~i~l~~l~~~ 183 (249)
||.+.+- .+.+.|.++. ..+|.+|-+-.|.|... ...+.|+++..-. .....+|.+.+++..++..
T Consensus 2 Fct~dFydfEtq~Tpvv~-G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~g-~d~~tla~~~i~l~~ll~~ 76 (107)
T PF11618_consen 2 FCTYDFYDFETQTTPVVR-GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQALG-SDFETLAAGQISLRPLLES 76 (107)
T ss_dssp EEEE-STT---EE---EE-SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-S-S-EEEEEEEEE--SHHHH-
T ss_pred EEEEEeeceeeeccccee-CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeecc-CCeEEEEEEEeechhhhcC
Confidence 5666663 3456666666 79999999999988652 4679999998653 3457999999999999744
No 165
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=87.23 E-value=3.2 Score=33.17 Aligned_cols=55 Identities=15% Similarity=0.286 Sum_probs=42.8
Q ss_pred EEeeeeecCcCCceeeeeEEEEeeC---CCccEEEEEEecCCC---------CCCCeeEEEEEechh
Q 025708 125 TVQTTIVKSNLNPVWNEELMLSVPQ---EYGPVKLEVFDHDTF---------SADDIMGEAEIDIQP 179 (249)
Q Consensus 125 ~~kT~~~~~t~~P~W~e~f~f~v~~---~~~~L~i~V~d~~~~---------~~d~~iG~~~i~l~~ 179 (249)
...|.+...+.+|.|.|++.+.++. ....|.|+.|+..-. .....+|-+.+||-.
T Consensus 57 ~~~s~V~yh~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl~ 123 (185)
T cd08697 57 SAYAAVLHHNQNPEFYDEIKIELPTQLHEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLLK 123 (185)
T ss_pred EEEEEEEEcCCCCccceeEEEecCCcCCCCeeEEEEEEeeccccccccccCCCccceEEEEEEeeec
Confidence 4678888889999999999999876 456899999986521 113568999998865
No 166
>KOG1117 consensus Rho- and Arf-GTPase activating protein ARAP3 [Signal transduction mechanisms; Cytoskeleton]
Probab=85.08 E-value=0.57 Score=45.32 Aligned_cols=48 Identities=35% Similarity=0.517 Sum_probs=39.7
Q ss_pred cccCchHHHHHHhhcCCCCCCCCCCCCCHHHHHHHHHHHhhcccccCCc
Q 025708 3 EVGGNSSANAIYEAFIPEGVSKPGPDSSHEIRSKFIRSKYELQEFLKPS 51 (249)
Q Consensus 3 ~~~gn~~~n~~~e~~~p~~~~kp~~~~~~~~~e~~ir~ky~~~~f~~~~ 51 (249)
-.+||..+|..|-.++|.+ .--.++++..-|.+||.+||..-.|-..-
T Consensus 357 ivlgn~~an~Fwa~nl~~~-e~lh~dssp~~r~~fi~~Kykeg~fRk~~ 404 (1186)
T KOG1117|consen 357 IVLGNPRANRFWAGNLPPN-EHLHPDSSPSTRRQFIKEKYKEGKFRKEH 404 (1186)
T ss_pred eeecCcccccccccCCCCc-cccCCCCCcchhhhHHHHHhhcccccccc
Confidence 4579999999999999976 34567788888999999999988876543
No 167
>PTZ00447 apical membrane antigen 1-like protein; Provisional
Probab=79.26 E-value=37 Score=29.94 Aligned_cols=82 Identities=16% Similarity=0.246 Sum_probs=57.1
Q ss_pred EEEEEEEEeecCCCCCCCCCCcEEEEEECCeEEeeeeecCcCCc--eeeeeEEEEeeCCCccEEEEEEecCCCCCCCeeE
Q 025708 94 LLKVKVVKGINLAIRDMMSSDPYVVLRLGQQTVQTTIVKSNLNP--VWNEELMLSVPQEYGPVKLEVFDHDTFSADDIMG 171 (249)
Q Consensus 94 ~L~V~v~~a~~L~~~~~~~~dpyv~v~l~~~~~kT~~~~~t~~P--~W~e~f~f~v~~~~~~L~i~V~d~~~~~~d~~iG 171 (249)
.|.|.|.+-.++.. ...-|+.++.|...++|..+.-+..- .-.++....+..-+..|++.||-.... +...||
T Consensus 59 ~LLVeI~EI~~i~k----~khiyIef~~Gr~d~TT~~IpTsKK~RI~IqqRV~IkIRQcDnTLkI~lfKKkLv-kk~hIg 133 (508)
T PTZ00447 59 YLLVKINEIFNINK----YKHIYIIFSTDKYDFTTDEIPTNKKNRIHIDQRVDIKIRQCDETLRVDLFTTKLT-KKVHIG 133 (508)
T ss_pred eEEEEehhhhcccc----ceeEEEEEEcCceEEEccccccCcCceEEEeeeeeeeeeecCceEEEEEEecccc-ceeEEE
Confidence 46677766555533 34689999999988888665443332 334555555655668899999988765 558899
Q ss_pred EEEEechhh
Q 025708 172 EAEIDIQPL 180 (249)
Q Consensus 172 ~~~i~l~~l 180 (249)
.+.+.+..=
T Consensus 134 dI~InIn~d 142 (508)
T PTZ00447 134 QIKIDINAS 142 (508)
T ss_pred EEEecccHH
Confidence 999998753
No 168
>KOG4269 consensus Rac GTPase-activating protein BCR/ABR [Signal transduction mechanisms]
Probab=78.02 E-value=1.4 Score=42.80 Aligned_cols=109 Identities=16% Similarity=0.217 Sum_probs=71.4
Q ss_pred ccccccccccccCCCCccccccceeeeEEEEEEEEeecCCCCCCCCCCcEEEEEEC-----CeEEeeeeecCcCCceeee
Q 025708 67 FSRKIIDSFRSTNSSQKKDVGMVEFIGLLKVKVVKGINLAIRDMMSSDPYVVLRLG-----QQTVQTTIVKSNLNPVWNE 141 (249)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~~~~~~dpyv~v~l~-----~~~~kT~~~~~t~~P~W~e 141 (249)
.+.++.....+.......+.......|.+++.+..|.+|... ..-||...+. ..+.+|.++.+|..|.||+
T Consensus 733 s~~plqt~s~i~~t~NddD~eSpl~ygflh~~vhsat~lkqs----~~lY~Td~v~e~~~~~s~~st~~iadT~~~~~np 808 (1112)
T KOG4269|consen 733 SCVPLQTVSNIPATYNDDDDESPLLYGFLHVIVHSATGLKQS----RNLYCTDEVDEFGYFVSKASTRVIADTAEPQWNP 808 (1112)
T ss_pred CCcccccccccccccccccccCcccccceeeeeccccccccc----cceeeehhhhhhccccccccceeeecccCCCCCh
Confidence 333444444444444455566667789999999999988643 3568877663 2457899999999999999
Q ss_pred eEEEEeeCCCccEEEEEEecCC----------CCCCCeeEEEEEechhh
Q 025708 142 ELMLSVPQEYGPVKLEVFDHDT----------FSADDIMGEAEIDIQPL 180 (249)
Q Consensus 142 ~f~f~v~~~~~~L~i~V~d~~~----------~~~d~~iG~~~i~l~~l 180 (249)
+++..+... +.+++..++++. ...+...|+..+.|...
T Consensus 809 e~hv~~~~s-qS~r~~~~ek~~~~~k~~~~~~~~~~~~~~~~~~~l~~~ 856 (1112)
T KOG4269|consen 809 EKHVPVIES-QSSRLEKTEKSTPVEKLIDSHSQNSQNEEKRSRMKLDPQ 856 (1112)
T ss_pred hcccchhhc-cccchhhhcccchHHHhhhccchhhcccccccccccCcc
Confidence 998887552 445555555442 23345566666665544
No 169
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=68.41 E-value=1.8 Score=41.03 Aligned_cols=68 Identities=12% Similarity=0.100 Sum_probs=47.2
Q ss_pred CCCcEEEEEECCeE-EeeeeecCcCCceeeeeEEEEeeCCCccEEEEEEecCCCCCCCeeEEEEEechhh
Q 025708 112 SSDPYVVLRLGQQT-VQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDTFSADDIMGEAEIDIQPL 180 (249)
Q Consensus 112 ~~dpyv~v~l~~~~-~kT~~~~~t~~P~W~e~f~f~v~~~~~~L~i~V~d~~~~~~d~~iG~~~i~l~~l 180 (249)
..+||+-+.+.... ..+.+.+.+..|.|+++|.+.+.. ...+.|.||.......+.+...+++..+++
T Consensus 27 al~~y~~v~vk~~~~~~~~~~~~~~~~~~~~~F~~~v~~-~~~~~i~v~~~~~~~~~~~~a~~~~~~e~~ 95 (694)
T KOG0694|consen 27 ALQPYLAVELKVKQGAENMTKVELRIPELRETFHVEVVA-GGAKNIIVLLKSPDPKALSEAQLSLQEESQ 95 (694)
T ss_pred hhhhhheeccceeecccccCCCCCCCchhhhheeeeeec-CCceEEEEEecCCcchhhHHHhHHHHHHHH
Confidence 45899999886544 355567789999999999999765 478899999876544444444444443433
No 170
>PLN03114 ADP-ribosylation factor GTPase-activating protein AGD10; Provisional
Probab=60.17 E-value=14 Score=32.50 Aligned_cols=51 Identities=20% Similarity=0.101 Sum_probs=28.7
Q ss_pred ccccCchHHHHHHhhcCCCCCCCC--CCCCCHHHHHHHHHHHhhcccccCCcc
Q 025708 2 IEVGGNSSANAIYEAFIPEGVSKP--GPDSSHEIRSKFIRSKYELQEFLKPSL 52 (249)
Q Consensus 2 ~~~~gn~~~n~~~e~~~p~~~~kp--~~~~~~~~~e~~ir~ky~~~~f~~~~~ 52 (249)
++.+||..||.+|+.+--..-.++ .-++....+=+-+-+++..+.+.....
T Consensus 78 Mk~GGN~rA~~fF~qhG~~~~~~~~~KY~S~aA~~Yre~L~keVa~~~a~~~~ 130 (395)
T PLN03114 78 MIYGGNNRAQVFFKQYGWSDGGKTEAKYTSRAADLYKQILAKEVAKSKAEEEL 130 (395)
T ss_pred HHHhcCHHHHHHHHHcCCCCCCCcccccCCHHHHHHHHHHHHHHHHhhhcccc
Confidence 456899999999998753221111 122222333333666667776664443
No 171
>PF14909 SPATA6: Spermatogenesis-assoc protein 6
Probab=49.28 E-value=1.2e+02 Score=23.15 Aligned_cols=84 Identities=17% Similarity=0.191 Sum_probs=58.7
Q ss_pred EEEEEEEeecCCCCCCCCCCcEEEEEECCeEEeeeeecCcCCceeeeeEEEEe-eC------------CCccEEEEEEec
Q 025708 95 LKVKVVKGINLAIRDMMSSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSV-PQ------------EYGPVKLEVFDH 161 (249)
Q Consensus 95 L~V~v~~a~~L~~~~~~~~dpyv~v~l~~~~~kT~~~~~t~~P~W~e~f~f~v-~~------------~~~~L~i~V~d~ 161 (249)
|.|+-+.|-|.--.+ ..|-|..+++-++..+|+...-..-=.++|.|.|.- .. ....+.|+++..
T Consensus 4 L~i~aVTCPGv~L~~--~~~vyL~v~~lg~~~~T~~~ppvFPllfhek~~FeK~F~~~~dp~~l~~~Le~e~~~iELiQl 81 (140)
T PF14909_consen 4 LEIHAVTCPGVWLCD--KGDVYLSVCILGQYKRTRCLPPVFPLLFHEKFRFEKVFPNAVDPAQLADLLEDETVYIELIQL 81 (140)
T ss_pred EEEEEEecCCeEeCC--CCCEEEEEEEcccEeecccCCCcCCeeEeeEEEeEEEecCCCCHHHHHHHhhcCcEEEEEEEE
Confidence 555555554433222 448899999999999998776655556789999862 11 246788999887
Q ss_pred CCCCCCCeeEEEEEechhhh
Q 025708 162 DTFSADDIMGEAEIDIQPLL 181 (249)
Q Consensus 162 ~~~~~d~~iG~~~i~l~~l~ 181 (249)
.... ...|+...-.+++++
T Consensus 82 ~~~~-g~iLA~ye~n~rDfL 100 (140)
T PF14909_consen 82 VPPA-GEILAYYEENTRDFL 100 (140)
T ss_pred eCCC-CcEEEEEeccccceE
Confidence 6643 678888887777764
No 172
>PF01060 DUF290: Transthyretin-like family; InterPro: IPR001534 This new apparently nematode-specific protein family has been called family 2 []. The proteins show weak similarity to transthyretin (formerly called prealbumin) which transports thyroid hormones. The specific function of this protein is unknown.; GO: 0005615 extracellular space
Probab=43.64 E-value=62 Score=21.74 Aligned_cols=26 Identities=31% Similarity=0.630 Sum_probs=21.4
Q ss_pred CccEEEEEEecCCCCCCCeeEEEEEe
Q 025708 151 YGPVKLEVFDHDTFSADDIMGEAEID 176 (249)
Q Consensus 151 ~~~L~i~V~d~~~~~~d~~iG~~~i~ 176 (249)
.....|++|+.+.+..|++|+.+..+
T Consensus 11 ~~~~~V~L~e~d~~~~Ddll~~~~Td 36 (80)
T PF01060_consen 11 AKNVKVKLWEDDYFDPDDLLDETKTD 36 (80)
T ss_pred CCCCEEEEEECCCCCCCceeEEEEEC
Confidence 35677999999988899999987764
No 173
>PF14924 DUF4497: Protein of unknown function (DUF4497)
Probab=42.15 E-value=1.2e+02 Score=21.84 Aligned_cols=33 Identities=12% Similarity=0.140 Sum_probs=23.1
Q ss_pred CccEEEEEEecCC---CCCCCeeEEEEEechhhhhh
Q 025708 151 YGPVKLEVFDHDT---FSADDIMGEAEIDIQPLLTS 183 (249)
Q Consensus 151 ~~~L~i~V~d~~~---~~~d~~iG~~~i~l~~l~~~ 183 (249)
...|.+.+++-.. .....+||.+.+++.+....
T Consensus 28 ~~pl~i~~~~~~~~~~~~~~~liG~~~i~l~~~~~~ 63 (112)
T PF14924_consen 28 SFPLYIVVKKVPPGFPTPPPMLIGSCPISLAEAFNR 63 (112)
T ss_pred CCceEEEEEecCCCCCCCccceeeEEEecHHHHHHH
Confidence 3567777665432 34567999999999988644
No 174
>TIGR03711 acc_sec_asp3 accessory Sec system protein Asp3. This protein is designated Asp3 because, along with SecY2, SecA2, and other proteins it is part of the accessory Sec system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=40.06 E-value=1.6e+02 Score=22.21 Aligned_cols=56 Identities=16% Similarity=0.329 Sum_probs=39.5
Q ss_pred CCCCcCCeeeeeeEecCC---CccccCCceeeeCCeEEEEEEEEeccccCceEEEEEEEEe
Q 025708 189 DPEMFGNMQIGKWLKSDD---NALLEDSTINIIDGKVKQKISLKLQNVESGELELELEWMP 246 (249)
Q Consensus 189 ~~~~~~~~~~~~w~~~~~---~~l~~~~~~~~~~g~~~~~~~l~l~~~~~G~i~l~l~~~~ 246 (249)
.+.+..|+.+..|....+ .... +.+..+.+.-.=.+.+.++..+.|.+.++|.|..
T Consensus 31 N~lMpsG~~I~~W~S~~nyq~~r~~--P~LPlLk~g~~Y~i~~n~~~~P~~s~~~ki~F~d 89 (135)
T TIGR03711 31 NPLMPSGETIHTWSSLTNYQAARTV--PSLPLLKRGQTYKLSLNADASPEGSVYLKITFFD 89 (135)
T ss_pred ccCCCCCCEEEEEEeeecccccCCC--CCCcEEcCCCEEEEEEeeeeCCCceEEEEEEEec
Confidence 345677889999987633 2222 4455565544456777888889999999999875
No 175
>KOG0906 consensus Phosphatidylinositol 3-kinase VPS34, involved in signal transduction [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=36.11 E-value=36 Score=32.57 Aligned_cols=42 Identities=19% Similarity=0.332 Sum_probs=33.4
Q ss_pred eeeeeEEEEeeC----CCccEEEEEEecCCCCCCCeeEEEEEechh
Q 025708 138 VWNEELMLSVPQ----EYGPVKLEVFDHDTFSADDIMGEAEIDIQP 179 (249)
Q Consensus 138 ~W~e~f~f~v~~----~~~~L~i~V~d~~~~~~d~~iG~~~i~l~~ 179 (249)
.|||.+++++.. .+..|.|++||...-..-.|+|..++.+..
T Consensus 78 ~wnewLtlpvky~dLt~~a~l~itiW~~n~~~~~~~vg~~t~~lf~ 123 (843)
T KOG0906|consen 78 NWNEWLTLPVKYSDLTRNAQLAITIWDVNGPKKAVFVGGTTVSLFG 123 (843)
T ss_pred chhhhhccccccccccccceEEEEEEecCCCceeeeccceEEEeec
Confidence 499999998754 356799999998776677899998887753
No 176
>KOG4027 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.52 E-value=2.1e+02 Score=22.28 Aligned_cols=41 Identities=22% Similarity=0.344 Sum_probs=28.7
Q ss_pred eeeeeEEEEeeCC----CccEEEEEEecCCCCCCCeeEEEEEech
Q 025708 138 VWNEELMLSVPQE----YGPVKLEVFDHDTFSADDIMGEAEIDIQ 178 (249)
Q Consensus 138 ~W~e~f~f~v~~~----~~~L~i~V~d~~~~~~d~~iG~~~i~l~ 178 (249)
+||--++...... =..|.+.||..|-+++|.+.|-..+++-
T Consensus 65 v~n~Pievt~KstsPygWPqivl~vfg~d~~G~d~v~GYg~~hiP 109 (187)
T KOG4027|consen 65 VINLPIEVTLKSTSPYGWPQIVLNVFGKDHSGKDCVTGYGMLHIP 109 (187)
T ss_pred EEecceEEEeccCCCCCCceEEEEEecCCcCCcceeeeeeeEecC
Confidence 4554444443331 2468899999999999999988777654
No 177
>KOG0904 consensus Phosphatidylinositol 3-kinase catalytic subunit (p110) [Signal transduction mechanisms]
Probab=34.80 E-value=86 Score=31.23 Aligned_cols=86 Identities=15% Similarity=0.198 Sum_probs=52.1
Q ss_pred eEEEEEEEEeecCCCCCCCCCCcEEEEEE----CCeE----EeeeeecCcCCceeeeeEEEEeeC----CCccEEEEEEe
Q 025708 93 GLLKVKVVKGINLAIRDMMSSDPYVVLRL----GQQT----VQTTIVKSNLNPVWNEELMLSVPQ----EYGPVKLEVFD 160 (249)
Q Consensus 93 g~L~V~v~~a~~L~~~~~~~~dpyv~v~l----~~~~----~kT~~~~~t~~P~W~e~f~f~v~~----~~~~L~i~V~d 160 (249)
.-+.|.++.+.++.... ..|-+|.|.. |... ..|.-+....+|.||+.+.|++.- ....|.|.||.
T Consensus 343 ~~frI~l~~is~~n~~~--t~~~kV~V~~~lyhG~e~Lc~~~sTs~v~~~~~~~Wn~~leFDI~i~DLPr~ArLc~~i~~ 420 (1076)
T KOG0904|consen 343 RPFRIKLVGISKVNLPE--TVDLKVFVEAGLYHGTEVLCKTRSTSEVPGCSFPLWNEWLEFDIYIKDLPRMARLCLAIYA 420 (1076)
T ss_pred CceEEEEeeccccCCCc--ccceEEEEEEEEEECCeehhcccccCCCCCccchhccceeEeeeecCCCChhhhheeeeeE
Confidence 56788888876653222 3355666654 4432 445555557899999999998754 12457777775
Q ss_pred cC----------------CCCCCCeeEEEEEechhh
Q 025708 161 HD----------------TFSADDIMGEAEIDIQPL 180 (249)
Q Consensus 161 ~~----------------~~~~d~~iG~~~i~l~~l 180 (249)
-. .-+.+-.+|.+.+.|-+.
T Consensus 421 v~~~~~s~~~s~~~~~kk~k~~~~plaWvN~~lfD~ 456 (1076)
T KOG0904|consen 421 VKAKAKSKKNSAESTKKKSKKEHCPLAWVNLMLFDH 456 (1076)
T ss_pred eechhccccccchhhhhccccccCceEEEeeeeeec
Confidence 31 112234677777666543
No 178
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=34.26 E-value=2.7e+02 Score=24.60 Aligned_cols=89 Identities=19% Similarity=0.201 Sum_probs=60.6
Q ss_pred eeeEEEEEEEEeecCCCCC----CC---CCCcEEEEEECCeEEeeeeecCcCCceee-eeEE-EEeeC----------CC
Q 025708 91 FIGLLKVKVVKGINLAIRD----MM---SSDPYVVLRLGQQTVQTTIVKSNLNPVWN-EELM-LSVPQ----------EY 151 (249)
Q Consensus 91 ~~g~L~V~v~~a~~L~~~~----~~---~~dpyv~v~l~~~~~kT~~~~~t~~P~W~-e~f~-f~v~~----------~~ 151 (249)
-.-.|.|++..|++|...- .. ...-|...++-+....|.......+|.+. ++-. |.+.. ..
T Consensus 190 d~FvLsvti~~a~nL~~Lip~~l~~~~~~~~f~f~YsllGn~Vt~~~F~~l~~~~f~~er~s~vRirSS~~~L~~yf~~~ 269 (340)
T PF12416_consen 190 DLFVLSVTIKFAENLEQLIPSSLPEEQNHSGFFFYYSLLGNDVTTEPFKSLSSPSFPPERASGVRIRSSLRVLRRYFQQI 269 (340)
T ss_pred ceEEEEEehhhhhhHHhhccccccccCCCccEEEEEEecCcEeEeeeccccCCCCcCeeeeeEEeecccHHHHHHHHhhC
Confidence 3457888999999986551 11 23556667777777888888888888765 2223 44432 13
Q ss_pred ccEEEEEEecCCCCCCCeeEEEEEechhhhhhh
Q 025708 152 GPVKLEVFDHDTFSADDIMGEAEIDIQPLLTSA 184 (249)
Q Consensus 152 ~~L~i~V~d~~~~~~d~~iG~~~i~l~~l~~~~ 184 (249)
..|.|.++. .+..||.+.|++..++...
T Consensus 270 ~~L~I~Lc~-----g~~~Lg~~~v~l~~Ll~~~ 297 (340)
T PF12416_consen 270 PKLQIHLCC-----GNQSLGSTSVPLQPLLPKD 297 (340)
T ss_pred CCeEEEEee-----CCcEEEEEEEEhhhccCCC
Confidence 567888876 3467999999999997543
No 179
>PF15432 Sec-ASP3: Accessory Sec secretory system ASP3
Probab=34.01 E-value=2e+02 Score=21.48 Aligned_cols=59 Identities=10% Similarity=0.223 Sum_probs=37.4
Q ss_pred CCCCcCCeeeeeeEecCCCccc-cCCceeeeCCeEEEEEEEEeccccCceEEEEEEEEeC
Q 025708 189 DPEMFGNMQIGKWLKSDDNALL-EDSTINIIDGKVKQKISLKLQNVESGELELELEWMPL 247 (249)
Q Consensus 189 ~~~~~~~~~~~~w~~~~~~~l~-~~~~~~~~~g~~~~~~~l~l~~~~~G~i~l~l~~~~~ 247 (249)
.+.+..|..+..|....+-.-. ..+.+..+...-.=.+.+.++..+.+.+.|++.|..-
T Consensus 20 N~lmpsG~~I~~W~S~~nyq~~r~~P~LPlLk~G~~Y~l~~~~~~~P~~svylki~F~dr 79 (128)
T PF15432_consen 20 NPLMPSGTVIHSWYSQTNYQADRTVPSLPLLKRGHTYQLKFNIDVVPENSVYLKIIFFDR 79 (128)
T ss_pred ccCCCCCCEeEEEECcceeecCCcCCCCCEecCCCEEEEEEEEEEccCCeEEEEEEEEcc
Confidence 3445778889999875332111 1233444444333456677777889999999998753
No 180
>PF10409 PTEN_C2: C2 domain of PTEN tumour-suppressor protein; InterPro: IPR014020 Tensins constitute an eukaryotic family of lipid phosphatases that are defined by the presence of two adjacent domains: a lipid phosphatase domain and a C2-like domain. The tensin-type C2 domain has a structure similar to the classical C2 domain (see IPR000008 from INTERPRO) that mediates the Ca2+-dependent membrane recruitment of several signalling proteins. However the tensin-type C2 domain lacks two of the three conserved loops that bind Ca2+, and in this respect it is similar to the C2 domains of PKC-type [, ]. The tensin-type C2 domain can bind phopholipid membranes in a Ca2+ independent manner []. In the tumour suppressor protein PTEN, the best characterised member of the family, the lipid phosphatase domain was shown to specifically dephosphorylate the D3 position of the inositol ring of the lipid second messenger, phosphatydilinositol-3-4-5-triphosphate (PIP3). The lipid phosphatase domain contains the signature motif HCXXGXXR present in the active sites of protein tyrosine phosphatases (PTPs) and dual specificity phosphatases (DSPs). Furthermore, two invariant lysines are found only in the tensin-type phosphatase motif (HCKXGKXR) and are suspected to interact with the phosphate group at position D1 and D5 of the inositol ring [, ]. The C2 domain is found at the C terminus of the tumour suppressor protein PTEN (phosphatidyl-inositol triphosphate phosphatase). This domain may include a CBR3 loop, indicating a central role in membrane binding. This domain associates across an extensive interface with the N-terminal phosphatase domain DSPc suggesting that the C2 domain productively positions the catalytic part of the protein on the membrane. The crystal structure of the PTEN tumour suppressor has been solved []. The lipid phosphatase domain has a structure similar to the dual specificity phosphatase (see IPR000387 from INTERPRO). However, PTEN has a larger active site pocket that could be important to accommodate PI(3,4,5)P3. Proteins known to contain a phosphatase and a C2 tensin-type domain are listed below: Tensin, a focal-adhesion molecule that binds to actin filaments. It may be involved in cell migration, cartilage development and in linking signal transduction pathways to the cytoskeleton. Phosphatase and tensin homologue deleted on chromosome 10 protein (PTEN). It antagonizes PI 3-kinase signalling by dephosphorylating the 3-position of the inositol ring of PI(3,4,5)P3 and thus inactivates downstream signalling. It plays major roles both during development and in the adult to control cell size, growth, and survival. Auxilin. It binds clathrin heavy chain and promotes its assembly into regular cages. Cyclin G-associated kinase or auxilin-2. It is a potential regulator of clathrin-mediated membrane trafficking. ; GO: 0005515 protein binding; PDB: 3N0A_A 1D5R_A 3V0D_B 3V0H_B 3V0G_A 3V0F_B 3V0J_A 3V0I_A 3AWE_B 3AWG_C ....
Probab=27.71 E-value=2.5e+02 Score=20.56 Aligned_cols=86 Identities=13% Similarity=0.174 Sum_probs=47.3
Q ss_pred EEEEEEEEeecCCCCCCC-CCCcEEEEEECCeEEe-eeeecCcCCcee-eeeEEEEeeC---CCccEEEEEEecCC-CCC
Q 025708 94 LLKVKVVKGINLAIRDMM-SSDPYVVLRLGQQTVQ-TTIVKSNLNPVW-NEELMLSVPQ---EYGPVKLEVFDHDT-FSA 166 (249)
Q Consensus 94 ~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~~~~k-T~~~~~t~~P~W-~e~f~f~v~~---~~~~L~i~V~d~~~-~~~ 166 (249)
.|.+.-+.-.++|..+.+ .+.||+++.-+..... +...... .... ...+.+.+.. -...+.|.+|+... ...
T Consensus 5 ~l~L~~I~l~~iP~f~~~~gc~p~i~I~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~GDV~i~~~~~~~~~~~ 83 (134)
T PF10409_consen 5 PLFLKSIILHGIPNFNSGGGCRPYIEIYNGGKKVFSTSKSYED-PKSYEQDSVIIELPKNLPLRGDVLIKFYHKRSSSMS 83 (134)
T ss_dssp EEEEEEEEEES-TTSTTSSCCTEEEEEEETTEEEEETCCTCCC-CCEEETTCEEEEEEEEEEEESEEEEEEEECETTECC
T ss_pred eEEEEEEEEECCCccCCCCCEEEEEEEECCCccEEEeccceec-cccccceeEEEEeCCCCeEeCCEEEEEEeCCCcccc
Confidence 445555555677766444 7899999998776652 2221111 1111 1223333322 23578899998773 335
Q ss_pred CCeeEEEEEechhh
Q 025708 167 DDIMGEAEIDIQPL 180 (249)
Q Consensus 167 d~~iG~~~i~l~~l 180 (249)
.+.+.++.+.-.=+
T Consensus 84 ~~~~f~~~FnT~Fi 97 (134)
T PF10409_consen 84 KEKMFRFWFNTGFI 97 (134)
T ss_dssp CEEEEEEEEEGGGS
T ss_pred cCeEEEEEEeeeee
Confidence 56777777665444
No 181
>PF10484 MRP-S23: Mitochondrial ribosomal protein S23; InterPro: IPR023611 This entry represents a domain found in both the mitochondrial ribosomal 23S and 25S proteins. The function of this conserved region is not known. In Saccharomyces cerevisiae (Baker's yeast) the mature mitochondrial ribosomes consist of a small (37S) and a large (54S) subunit. The 37S subunit contains at least 33 different proteins and 1 molecule of RNA (15S). The 54S subunit contains at least 45 different proteins and 1 molecule of RNA (21S) [, ].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005840 ribosome
Probab=22.91 E-value=62 Score=24.12 Aligned_cols=34 Identities=29% Similarity=0.492 Sum_probs=24.0
Q ss_pred HHHHhhcCCC---CCCCCCCCCCH---HHHHHHHHHHhhc
Q 025708 11 NAIYEAFIPE---GVSKPGPDSSH---EIRSKFIRSKYEL 44 (249)
Q Consensus 11 n~~~e~~~p~---~~~kp~~~~~~---~~~e~~ir~ky~~ 44 (249)
..+|+|.-|. .|.+|-+.... -.+|+.||||+-.
T Consensus 33 yDVY~aFPP~~EP~~~rp~~~~~vr~I~Y~ED~iRAkFyk 72 (127)
T PF10484_consen 33 YDVYEAFPPKREPRYDRPLPKKPVREIFYEEDIIRAKFYK 72 (127)
T ss_pred eeehhcCCCCCCCcccCcCCCCCccccccHHHHHHHHHHH
Confidence 4688888873 66777555422 2679999999766
No 182
>KOG3543 consensus Ca2+-dependent activator protein [Signal transduction mechanisms]
Probab=21.31 E-value=2.3e+02 Score=27.36 Aligned_cols=82 Identities=18% Similarity=0.211 Sum_probs=57.0
Q ss_pred eEEEEEEEEeecCCCCCCCCCCcEEEEEECCeEEeeeeecCcCCceeeeeEEEEeeCCCccEEEEEEecCCC---CCCCe
Q 025708 93 GLLKVKVVKGINLAIRDMMSSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDTF---SADDI 169 (249)
Q Consensus 93 g~L~V~v~~a~~L~~~~~~~~dpyv~v~l~~~~~kT~~~~~t~~P~W~e~f~f~v~~~~~~L~i~V~d~~~~---~~d~~ 169 (249)
-.+.|.|++..+|.....+ .=.||.+.+.+.+.+|.... ...|.|+-.=.|....+...+++.+|-..+. -.|.-
T Consensus 341 ~smevvvmevqglksvapn-rivyctmevegeklqtdqae-askp~wgtqgdfstthplpvvkvklftestgvlaledke 418 (1218)
T KOG3543|consen 341 LSMEVVVMEVQGLKSVAPN-RIVYCTMEVEGEKLQTDQAE-ASKPKWGTQGDFSTTHPLPVVKVKLFTESTGVLALEDKE 418 (1218)
T ss_pred eeeeEEEeeeccccccCCC-eeEEEEEEecccccccchhh-hcCCCCCcCCCcccCCCCceeEEEEEeecceeEEeechh
Confidence 3466888888998755432 23699999988777776543 3579999877777766666788888875531 13567
Q ss_pred eEEEEEe
Q 025708 170 MGEAEID 176 (249)
Q Consensus 170 iG~~~i~ 176 (249)
+|++.+.
T Consensus 419 lgrvil~ 425 (1218)
T KOG3543|consen 419 LGRVILQ 425 (1218)
T ss_pred hCeEEEe
Confidence 8887764
No 183
>KOG0702 consensus Predicted GTPase-activating protein [Signal transduction mechanisms]
Probab=21.09 E-value=1.7e+02 Score=27.17 Aligned_cols=49 Identities=20% Similarity=0.335 Sum_probs=31.6
Q ss_pred cCchHHHHHHhhcCCCCCCCCCCCC-CHHHHHHHHHHHhhcccccCCcccc
Q 025708 5 GGNSSANAIYEAFIPEGVSKPGPDS-SHEIRSKFIRSKYELQEFLKPSLRI 54 (249)
Q Consensus 5 ~gn~~~n~~~e~~~p~~~~kp~~~~-~~~~~e~~ir~ky~~~~f~~~~~~~ 54 (249)
.||....+||-... ++...--|+. +..-..+|++.||+.+.+.-+....
T Consensus 84 hgNq~~k~i~fkl~-D~q~S~vPD~rn~~~~kef~q~~y~~kr~~v~~n~~ 133 (524)
T KOG0702|consen 84 HGNQVCKEIWFKLF-DFQRSNVPDSRNPQKVKEFQQEKYVKKRYYVPKNQM 133 (524)
T ss_pred cchhhhhhhhhcch-hhhhccCCCcccchhhHHHHhhhhccceeecCcccc
Confidence 59999999997544 4322222222 1223358999999999988765543
Done!