Query 025709
Match_columns 249
No_of_seqs 151 out of 1317
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 15:53:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025709.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025709hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tr8_A Oligoribonuclease; tran 100.0 5.5E-46 1.9E-50 314.1 17.2 181 65-246 5-185 (186)
2 2igi_A Oligoribonuclease; RNAs 100.0 1.3E-39 4.4E-44 271.6 17.7 177 67-244 3-179 (180)
3 2gbz_A Oligoribonuclease; ORN, 100.0 8.9E-40 3.1E-44 276.8 16.0 179 67-246 7-185 (194)
4 2gui_A DNA polymerase III epsi 100.0 2.2E-29 7.5E-34 212.0 19.6 157 67-240 7-183 (194)
5 2p1j_A POLIII, DNA polymerase 100.0 2.3E-29 7.9E-34 211.2 18.0 154 67-240 10-174 (186)
6 1w0h_A 3'-5' exonuclease ERI1; 100.0 2.8E-29 9.6E-34 212.5 16.2 168 64-242 5-195 (204)
7 3mxm_B Three prime repair exon 100.0 1.3E-29 4.4E-34 221.7 12.6 168 67-243 10-216 (242)
8 2xri_A ERI1 exoribonuclease 3; 100.0 5.8E-29 2E-33 214.7 13.7 162 69-241 31-213 (224)
9 3u3y_B Three prime repair exon 100.0 2.9E-29 9.8E-34 227.0 11.5 167 68-243 11-216 (314)
10 1y97_A Three prime repair exon 100.0 1.4E-28 4.7E-33 213.3 15.0 166 66-243 7-211 (238)
11 2f96_A Ribonuclease T; RNAse, 100.0 5.3E-28 1.8E-32 208.3 16.4 166 68-242 28-213 (224)
12 3v9w_A Ribonuclease T; DEDD nu 99.9 4.2E-27 1.4E-31 203.9 16.0 170 66-244 34-223 (235)
13 1wlj_A Interferon stimulated g 99.9 2.2E-27 7.6E-32 199.7 11.8 154 68-245 4-172 (189)
14 1zbh_A 3'-5' exonuclease ERI1; 99.9 1.6E-26 5.5E-31 207.7 16.8 167 67-242 76-263 (299)
15 3cg7_A CRN-4, cell death-relat 99.9 7.4E-27 2.5E-31 210.9 12.4 161 67-241 17-208 (308)
16 2qxf_A Exodeoxyribonuclease I; 99.9 6.9E-26 2.3E-30 215.6 16.3 165 68-241 8-200 (482)
17 1zbu_A ERI-1 homolog, 3'-5' ex 99.9 3.7E-26 1.3E-30 209.6 11.0 167 67-242 126-313 (349)
18 4hec_A Putative uncharacterize 99.3 1E-11 3.5E-16 104.5 11.7 159 66-240 19-180 (190)
19 2kfn_A Klenow fragment of DNA 98.9 3.4E-08 1.2E-12 96.3 15.8 136 69-242 26-193 (605)
20 1x9m_A DNA polymerase; DNA plo 98.5 8E-07 2.7E-11 88.0 13.3 97 71-211 1-102 (698)
21 4gmj_B CCR4-NOT transcription 98.0 9.1E-05 3.1E-09 65.7 14.2 172 68-245 33-248 (285)
22 1qht_A Protein (DNA polymerase 98.0 2.1E-05 7.1E-10 78.7 10.4 91 67-187 133-227 (775)
23 1s5j_A DNA polymerase I; repli 97.7 6.9E-05 2.4E-09 75.6 8.1 101 66-188 187-296 (847)
24 2d5r_A CCR4-NOT transcription 97.6 0.00086 2.9E-08 58.4 12.7 172 68-245 23-238 (252)
25 3iay_A DNA polymerase delta ca 97.5 0.0002 6.8E-09 72.9 8.0 99 67-186 247-352 (919)
26 2p51_A SPCC18.06C protein; DED 97.5 0.0016 5.6E-08 58.7 12.9 173 67-245 43-259 (333)
27 1noy_A Protein (DNA polymerase 97.4 0.00069 2.4E-08 62.3 9.4 110 66-185 103-229 (388)
28 4dfk_A DNA polymerase I, therm 97.1 0.00066 2.2E-08 65.3 6.8 116 65-242 6-128 (540)
29 2gv9_A DNA polymerase; polymer 97.0 0.0019 6.5E-08 67.4 9.1 109 65-183 316-437 (1193)
30 1uoc_A POP2; hydrolase, DEDD n 96.8 0.015 5.1E-07 51.6 12.5 171 66-244 35-267 (289)
31 3k59_A POL II, DNA polymerase 95.6 0.038 1.3E-06 55.3 9.3 93 65-185 149-242 (786)
32 3qex_A DNA polymerase, GP43; d 95.2 0.068 2.3E-06 54.2 9.6 107 68-184 107-231 (903)
33 3pv8_A DNA polymerase I; DNA p 94.6 0.22 7.5E-06 48.2 11.1 123 71-243 31-182 (592)
34 2py5_A DNA polymerase; protein 94.6 0.11 3.8E-06 50.1 8.9 73 68-186 5-77 (575)
35 3saf_A Exosome component 10; e 93.3 0.71 2.4E-05 42.8 11.4 82 151-243 173-278 (428)
36 3d45_A Poly(A)-specific ribonu 91.7 0.39 1.3E-05 45.5 7.6 77 165-242 277-392 (507)
37 2hbj_A Exosome complex exonucl 87.8 5.7 0.0002 36.3 11.9 81 151-242 150-254 (410)
38 2a1r_A Poly(A)-specific ribonu 87.3 2.9 9.8E-05 38.7 9.5 77 165-242 282-397 (430)
39 1vk0_A Hypothetical protein; h 84.7 8.1 0.00028 31.9 10.2 43 150-200 98-140 (206)
40 2e6m_A Werner syndrome ATP-dep 83.5 3.3 0.00011 33.7 7.2 39 151-197 87-125 (208)
41 3cym_A Uncharacterized protein 76.0 48 0.0016 30.4 13.6 78 149-242 84-187 (440)
42 3ikm_A DNA polymerase subunit 69.2 0.31 1.1E-05 50.0 -3.6 35 165-201 195-229 (1172)
43 1yt3_A Ribonuclease D, RNAse D 65.3 46 0.0016 29.6 10.3 82 150-242 64-170 (375)
44 2a1r_A Poly(A)-specific ribonu 55.7 12 0.00042 34.4 4.8 15 68-82 21-35 (430)
45 3q7c_A Nucleoprotein; deddh ex 31.6 2E+02 0.0069 24.0 7.9 136 69-232 57-212 (243)
46 2x5h_A ORF 131; viral protein; 22.8 39 0.0013 24.0 1.8 56 87-158 35-90 (97)
47 3d45_A Poly(A)-specific ribonu 22.5 39 0.0013 31.7 2.3 46 68-113 23-96 (507)
48 3dqz_A Alpha-hydroxynitrIle ly 20.1 91 0.0031 24.1 3.8 31 142-172 52-82 (258)
No 1
>3tr8_A Oligoribonuclease; transcription, hydrolase; 2.50A {Coxiella burnetii}
Probab=100.00 E-value=5.5e-46 Score=314.09 Aligned_cols=181 Identities=43% Similarity=0.670 Sum_probs=163.2
Q ss_pred cccCCcEEEEEEecCCCCCCCCceEEEEEEEEcCcEeeeeccceEEecCCCcccccchhhhhhhhhccCCcHHHHhcCCC
Q 025709 65 FEYKMPLVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTKKVLHSGLT 144 (249)
Q Consensus 65 ~~~~~~~V~lDlETTGL~p~~d~IIEIgaVv~dg~~~~~~~~~~~~I~p~~~~~~~~~~~~~~~h~~tGIt~~~l~~~p~ 144 (249)
.+...+|||||+|||||+|.+|+|||||||+++++...+.+.++++|+|+...+..|++|+..+|.+||||+++++++|+
T Consensus 5 ~~~~~~~v~~D~ETTGL~p~~d~IiEIgaV~~d~~~~i~~~~~~~~i~~p~~~l~~~~~~~~~ih~ltGIt~~~l~~~p~ 84 (186)
T 3tr8_A 5 DFSDDNLIWLDLEMTGLDPERDRIIEIATIVTNSHLDILAEGPAFAIHQPDKLLTAMDNWNTSHHTASGLLERVKNSSVD 84 (186)
T ss_dssp CCCTTCEEEEEEEESSSCTTTCCEEEEEEEEECTTCCEEEECCCEECCCCHHHHTTSCHHHHHHHHHTSHHHHHHTCCCC
T ss_pred cCCCCcEEEEEEECCCCCCCCCceEEEEEEEEcCCeEEeeeeEEEEEeCCccccccCCcccHHHHhccCCCHHHHhcCCC
Confidence 45578999999999999999999999999999998766667778889877766566789999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccCCCCcEEEEecHHHHHHHHHHHHHhccCCCCCceeehhHHHHHHHHHCCCcccCCCCCCCCCcH
Q 025709 145 EREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMRWYPRDYRKVPSKEQKHRA 224 (249)
Q Consensus 145 ~~ea~~~~~~fl~~~~~~~~~~lVghn~~FD~~fL~~~~~~~~~~~~~~~iD~~sl~~la~r~~p~~~~~~l~~~~~HrA 224 (249)
+.+++.+|++|++++++++.++|||||+.||+.||++++++++.+++++++|++++.+|+|+|+|.... +++..++|||
T Consensus 85 ~~ev~~~~l~fl~~~~~~~~~~lvghn~~FD~~FL~~~~~~~~~~~~~~~iDvsTl~elar~~~P~~~~-~~~~~~~HrA 163 (186)
T 3tr8_A 85 EVEAETLTLAFLEKYVSAGKSPLCGNSVCQDRRFLSRYMPRLNQFFHYRHLDVTTLKILAQRWAPQIAA-AHIKESQHLA 163 (186)
T ss_dssp HHHHHHHHHHHHTTTSCTTCSCEEESSTHHHHHHHHHHCHHHHHHSCSCEEEHHHHHHHHHHHCHHHHT-TSCCCCCSCH
T ss_pred HHHHHHHHHHHHHHhccCCCcEEEEEcHHHhHHHHHHHHHHcCCCCCCcEEeHHHHHHHHHHHCccccc-cCCCCCCcCh
Confidence 999999999999877766667899999999999999999999988999999999987799999998754 6788999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCcC
Q 025709 225 LDDIRESIMELKYYKENIFKTN 246 (249)
Q Consensus 225 l~Da~aT~~ll~~~~~~~~~~~ 246 (249)
++||++|+++|+|||+++|+..
T Consensus 164 l~Da~ati~~l~~y~~~~~~~~ 185 (186)
T 3tr8_A 164 LQDIRDSIEELRYYRAHLLNLS 185 (186)
T ss_dssp HHHHHHHHHHHHHHHHHTBCC-
T ss_pred HHHHHHHHHHHHHHHHHhhccc
Confidence 9999999999999999999864
No 2
>2igi_A Oligoribonuclease; RNAse, exoribonuclease, exonuclease, hydrolase, mRNA decay; 1.70A {Escherichia coli} SCOP: c.55.3.5 PDB: 1yta_A 1j9a_A
Probab=100.00 E-value=1.3e-39 Score=271.64 Aligned_cols=177 Identities=45% Similarity=0.701 Sum_probs=156.7
Q ss_pred cCCcEEEEEEecCCCCCCCCceEEEEEEEEcCcEeeeeccceEEecCCCcccccchhhhhhhhhccCCcHHHHhcCCCHH
Q 025709 67 YKMPLVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTKKVLHSGLTER 146 (249)
Q Consensus 67 ~~~~~V~lDlETTGL~p~~d~IIEIgaVv~dg~~~~~~~~~~~~I~p~~~~~~~~~~~~~~~h~~tGIt~~~l~~~p~~~ 146 (249)
...+||+||+||||++|..++|||||+|+++++...+.+.|+.+|+|+.++++.+++|++.+|.+||||++++.++|++.
T Consensus 3 ~~~~~v~iD~ETTGl~~~~~~IieIg~v~~~~~~~~~~~~~~~lv~P~~~i~~~i~~~~~~~~~itGIt~~~l~~~~~~~ 82 (180)
T 2igi_A 3 NENNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAEGPTIAVHQSDEQLALMDDWNVRTHTASGLVERVKASTMGDR 82 (180)
T ss_dssp GGGCEEEEEEEESSSCTTTCCEEEEEEEEECTTCCEEEEEEEEECCCCHHHHTTCCHHHHHHHHHTTHHHHHHHCCCCHH
T ss_pred CCCcEEEEEeeCCCCCCCCCceEEEEEEEEcCCCcEecCCcceEECCCHHHhhcCCHHHHHHHHHcCCCHHHHhcCCCHH
Confidence 35789999999999999999999999998887765555669999999888777778899887789999999999999999
Q ss_pred HHHHHHHHHHhcccCCCCcEEEEecHHHHHHHHHHHHHhccCCCCCceeehhHHHHHHHHHCCCcccCCCCCCCCCcHHH
Q 025709 147 EAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMRWYPRDYRKVPSKEQKHRALD 226 (249)
Q Consensus 147 ea~~~~~~fl~~~~~~~~~~lVghn~~FD~~fL~~~~~~~~~~~~~~~iD~~sl~~la~r~~p~~~~~~l~~~~~HrAl~ 226 (249)
+++.+|.+|++++.+++..+|||||+.||+.||++++++++.+++++++|++++.+++++++|.... +++..++|||++
T Consensus 83 ~v~~~~~~~l~~~~~~~~~~lv~hn~~fD~~fL~~~~~~~~~~~~~~~~d~~tl~~l~~~~~p~~~~-~i~~~~~H~Al~ 161 (180)
T 2igi_A 83 EAELATLEFLKQWVPAGKSPICGNSIGQDRRFLFKYMPELEAYFHYRYLDVSTLKELARRWKPEILD-GFTKQGTHQAMD 161 (180)
T ss_dssp HHHHHHHHHHTTTSCTTTSCEEESSHHHHHHHHHHHCHHHHHHSCSCEEETHHHHHHHHHHCGGGGG-GSCCCCCCCHHH
T ss_pred HHHHHHHHHHHHhCCCCCceEEecCHHHHHHHHHHHHHHhccCCCcceeeHHHHHHHHHHhChHhhh-CCCCcCCcCcHH
Confidence 9999999999986555456899999999999999999988878889999988877799999997543 456778999999
Q ss_pred HHHHHHHHHHHHHHHhcC
Q 025709 227 DIRESIMELKYYKENIFK 244 (249)
Q Consensus 227 Da~aT~~ll~~~~~~~~~ 244 (249)
||++|+++|++|++.+|+
T Consensus 162 Da~ata~l~~~~~~~~~~ 179 (180)
T 2igi_A 162 DIRESVAELAYYREHFIK 179 (180)
T ss_dssp HHHHHHHHHHHHHHHTBC
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 999999999999999985
No 3
>2gbz_A Oligoribonuclease; ORN, deddh, structural genomics, hydrolase; 2.30A {Xanthomonas campestris PV}
Probab=100.00 E-value=8.9e-40 Score=276.77 Aligned_cols=179 Identities=40% Similarity=0.601 Sum_probs=159.1
Q ss_pred cCCcEEEEEEecCCCCCCCCceEEEEEEEEcCcEeeeeccceEEecCCCcccccchhhhhhhhhccCCcHHHHhcCCCHH
Q 025709 67 YKMPLVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTKKVLHSGLTER 146 (249)
Q Consensus 67 ~~~~~V~lDlETTGL~p~~d~IIEIgaVv~dg~~~~~~~~~~~~I~p~~~~~~~~~~~~~~~h~~tGIt~~~l~~~p~~~ 146 (249)
...+|||||+||||++|.+|+|||||+|..+++...+.+.|+++|+|+.++.+.+++|+..+|.+||||+++++++|++.
T Consensus 7 ~~~~~vviD~ETTGl~p~~d~IieIgav~~~~~~~~~~~~~~~~v~p~~~i~~~~~~~~~~~~~itGIt~~~l~~~p~~~ 86 (194)
T 2gbz_A 7 GNDRLIWIDLEMTGLDTDRDSIIEIATIVTDAQLNVLAEGPELAIAHSLETLEAMDEWNRNQHRRSGLWQRVLDSQVTHA 86 (194)
T ss_dssp -CCEEEEEEEEESCSCTTTCCEEEEEEEEEETTCCEEEECCCEECCCCHHHHHTSCSHHHHHHHHHTHHHHHHHCCCCHH
T ss_pred CCCCEEEEEeECCCCCCCCCccEEEEEEEEcCCcceeccCceEEEeCCHHHhhccchHHHHHHHhhCCCHHHHhcCCCHH
Confidence 35789999999999999999999999999888865556789999999887766778899887788999999999999999
Q ss_pred HHHHHHHHHHhcccCCCCcEEEEecHHHHHHHHHHHHHhccCCCCCceeehhHHHHHHHHHCCCcccCCCCCCCCCcHHH
Q 025709 147 EAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMRWYPRDYRKVPSKEQKHRALD 226 (249)
Q Consensus 147 ea~~~~~~fl~~~~~~~~~~lVghn~~FD~~fL~~~~~~~~~~~~~~~iD~~sl~~la~r~~p~~~~~~l~~~~~HrAl~ 226 (249)
+++.+|++|+++++++++++|||||+.||+.||++++++++.+++++.+|+.++.+++++++|.... +++..++|||++
T Consensus 87 ev~~~~~~~l~~~~~~~~~~lvghn~~FD~~fL~~~~~~~~~~~~~~~~d~~~l~~l~~~~~p~~~~-~i~~~~~H~Al~ 165 (194)
T 2gbz_A 87 QAEAQTVAFLGEWIRAGASPMCGNSICQDRRFLHRQMSRLERYFHYRNLDVSTIKELARRWAPAVAS-GFAKSSAHTALS 165 (194)
T ss_dssp HHHHHHHHHHTTTCCTTSSCEEESSHHHHHHHHHHHCHHHHHHSCSCEEEHHHHHHHHHHHCGGGGT-TCCCCSCCSHHH
T ss_pred HHHHHHHHHHHHhCCCCCceEEecCHHHhHHHHHHHHHHhcccCCCccccHHHHHHHHHHhCHHHHh-CCCCCCCcccHH
Confidence 9999999999987666667799999999999999999998888889999999998899999998554 356778999999
Q ss_pred HHHHHHHHHHHHHHHhcCcC
Q 025709 227 DIRESIMELKYYKENIFKTN 246 (249)
Q Consensus 227 Da~aT~~ll~~~~~~~~~~~ 246 (249)
||++|+++|++|++.+|+.+
T Consensus 166 Da~ata~ll~~~~~~~~~~~ 185 (194)
T 2gbz_A 166 DVRDSIDELRHYRQFMGTLG 185 (194)
T ss_dssp HHHHHHHHHHHHHTTSHHHH
T ss_pred HHHHHHHHHHHHHHHhccCC
Confidence 99999999999999998643
No 4
>2gui_A DNA polymerase III epsilon subunit; DNA polymerase proofreading domain, transferase; HET: DNA U5P; 1.60A {Escherichia coli} SCOP: c.55.3.5 PDB: 1j54_A* 1j53_A* 2ido_A* 2xy8_A*
Probab=99.97 E-value=2.2e-29 Score=211.97 Aligned_cols=157 Identities=15% Similarity=0.140 Sum_probs=127.7
Q ss_pred cCCcEEEEEEecCCCCC-----CCCceEEEEEEEEcCcEeeeeccceEEecCCCcccccchhhhhhhhhccCCcHHHHhc
Q 025709 67 YKMPLVWIDLEMTGLKI-----EVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTKKVLHS 141 (249)
Q Consensus 67 ~~~~~V~lDlETTGL~p-----~~d~IIEIgaVv~dg~~~~~~~~~~~~I~p~~~~~~~~~~~~~~~h~~tGIt~~~l~~ 141 (249)
..++||+||+||||+++ ..++|||||+|.+++... +.+.|+.+|+|...+ +++++ .+||||++++.+
T Consensus 7 m~~~~vviD~ETTGl~~~~~~~~~~~Iieig~v~~~~~~~-~~~~f~~lv~P~~~i----~~~~~---~i~GIt~~~l~~ 78 (194)
T 2gui_A 7 AITRQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRL-TGNNFHVYLKPDRLV----DPEAF---GVHGIADEFLLD 78 (194)
T ss_dssp -CCEEEEEEEEESCCCSSSSTTTTCCEEEEEEEEEETTEE-CSCCEEEECCCSSCC----CHHHH---HHHCCCHHHHTT
T ss_pred ccCCEEEEEeeCCCCCCcccCCCCCEEEEEEEEEEECCeE-eccEEEEEECcCCcC----CHHHH---HhhCcCHHHHhC
Confidence 34789999999999999 569999999996654332 345689999998654 56776 456999999999
Q ss_pred CCCHHHHHHHHHHHHhcccCCCCcEEEEecHHHHHHHHHHHHHhccCCCC-----CceeehhHHHHHHHHHCCCcc----
Q 025709 142 GLTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFS-----HVLVDVSSIKALCMRWYPRDY---- 212 (249)
Q Consensus 142 ~p~~~ea~~~~~~fl~~~~~~~~~~lVghn~~FD~~fL~~~~~~~~~~~~-----~~~iD~~sl~~la~r~~p~~~---- 212 (249)
+|++.+++.+|.+|+++ .+|||||+.||+.||++.+.+++..++ ++++|+ ..++++++|...
T Consensus 79 ~~~~~~v~~~~~~~l~~------~~lv~hn~~fD~~~L~~~~~~~g~~~p~~~~~~~~iDt---~~l~~~~~p~~~~~L~ 149 (194)
T 2gui_A 79 KPTFAEVADEFMDYIRG------AELVIHNAAFDIGFMDYEFSLLKRDIPKTNTFCKVTDS---LAVARKMFPGKRNSLD 149 (194)
T ss_dssp SCCHHHHHHHHHHHHTT------SEEEETTHHHHHHHHHHHHHHTCSCCCCGGGTSEEEEH---HHHHHHHSTTSCCSHH
T ss_pred CCCHHHHHHHHHHHHCC------CeEEEEchHHhHHHHHHHHHHcCCCCccccccCceeeH---HHHHHHHcCCCCCCHH
Confidence 99999999999999986 468999999999999999998886643 579999 467888888642
Q ss_pred ----cCCCCCC--CCCcHHHHHHHHHHHHHHHHH
Q 025709 213 ----RKVPSKE--QKHRALDDIRESIMELKYYKE 240 (249)
Q Consensus 213 ----~~~l~~~--~~HrAl~Da~aT~~ll~~~~~ 240 (249)
.++++.. .+|||++||++|++++..+.+
T Consensus 150 ~l~~~~gi~~~~~~~H~Al~Da~~ta~l~~~l~~ 183 (194)
T 2gui_A 150 ALCARYEIDNSKRTLHGALLDAQILAEVYLAMTG 183 (194)
T ss_dssp HHHHHTTCCCTTCSSCCHHHHHHHHHHHHHHHTC
T ss_pred HHHHHcCcCCCCCCCCChHHHHHHHHHHHHHHHh
Confidence 1355544 489999999999999988754
No 5
>2p1j_A POLIII, DNA polymerase III POLC-type; structural genomics, exonuclease, PSI-2, protein structure initiative; HET: DNA; 2.50A {Thermotoga maritima MSB8}
Probab=99.97 E-value=2.3e-29 Score=211.17 Aligned_cols=154 Identities=23% Similarity=0.365 Sum_probs=125.9
Q ss_pred cCCcEEEEEEecCCCCCCCCceEEEEEEEE-cCcEeeeeccceEEecCCCcccccchhhhhhhhhccCCcHHHHhcCCCH
Q 025709 67 YKMPLVWIDLEMTGLKIEVDRILEIACIIT-DGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTKKVLHSGLTE 145 (249)
Q Consensus 67 ~~~~~V~lDlETTGL~p~~d~IIEIgaVv~-dg~~~~~~~~~~~~I~p~~~~~~~~~~~~~~~h~~tGIt~~~l~~~p~~ 145 (249)
.+.+||+||+||||++|..++|||||+|.+ +|+.. +.|+.+|+|..++ +++++ .+||||++++.++|++
T Consensus 10 ~~~~~v~iD~ETTGl~~~~~~IieIg~v~~~~g~i~---~~f~~lv~P~~~i----~~~~~---~i~GIt~~~l~~~~~~ 79 (186)
T 2p1j_A 10 GDATFVVLDFETTGLDPQVDEIIEIGAVKIQGGQIV---DEYHTLIKPSREI----SRKSS---EITGITQEMLENKRSI 79 (186)
T ss_dssp ---CEEEEEEEESCSCTTTCCEEEEEEEEEETTEEE---EEEEEECBCSSCC----CHHHH---HHHCCCHHHHTTCCBH
T ss_pred cCCCEEEEEEECCCCCCCCCeEEEEEEEEEECCEEE---EEEEEEECcCCCC----CHHHh---hhcCCCHHHHhcCCCH
Confidence 457899999999999999999999999954 44432 4688999998754 56776 4569999999999999
Q ss_pred HHHHHHHHHHHhcccCCCCcEEEEecHHHHHHHHHHHHHhccCCC-CCceeehhHHHHHHHHHCCCcc---------cCC
Q 025709 146 REAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLF-SHVLVDVSSIKALCMRWYPRDY---------RKV 215 (249)
Q Consensus 146 ~ea~~~~~~fl~~~~~~~~~~lVghn~~FD~~fL~~~~~~~~~~~-~~~~iD~~sl~~la~r~~p~~~---------~~~ 215 (249)
.+++.+|.+|+++ .++||||+.||+.||++.+++++..+ +++++|+ ..++++++ ... .++
T Consensus 80 ~~v~~~~~~~l~~------~~lv~hn~~fD~~~L~~~~~~~g~~~~~~~~iDt---~~l~~~~~-~~~~~~L~~l~~~~g 149 (186)
T 2p1j_A 80 EEVLPEFLGFLED------SIIVAHNANFDYRFLRLWIKKVMGLDWERPYIDT---LALAKSLL-KLRSYSLDSVVEKLG 149 (186)
T ss_dssp HHHHHHHHHHSSS------CEEEETTHHHHHHHHHHHHHHHHCCCCCCCEEEH---HHHHHHHT-CCSCCSHHHHHHHTT
T ss_pred HHHHHHHHHHHCC------CEEEEECcHHHHHHHHHHHHHcCCCCCCCCEEeH---HHHHHHHh-hcCCCCHHHHHHHcC
Confidence 9999999999986 47999999999999999999888754 6789999 45677775 211 135
Q ss_pred CCCCCCCcHHHHHHHHHHHHHHHHH
Q 025709 216 PSKEQKHRALDDIRESIMELKYYKE 240 (249)
Q Consensus 216 l~~~~~HrAl~Da~aT~~ll~~~~~ 240 (249)
++..++|||++||++|+++++.+.+
T Consensus 150 i~~~~~H~Al~Da~~t~~l~~~l~~ 174 (186)
T 2p1j_A 150 LGPFRHHRALDDARVTAQVFLRFVE 174 (186)
T ss_dssp CCSTTCCHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCcCHHHHHHHHHHHHHHHHH
Confidence 6667799999999999999988754
No 6
>1w0h_A 3'-5' exonuclease ERI1; nuclease domain, hydrolase; HET: AMP; 1.59A {Homo sapiens} SCOP: c.55.3.5
Probab=99.96 E-value=2.8e-29 Score=212.51 Aligned_cols=168 Identities=15% Similarity=0.138 Sum_probs=130.9
Q ss_pred ccccCCcEEEEEEecCCCCC----CCCceEEEEEEEEc---CcEeeeeccceEEecCCCcccccchhhhhhhhhccCCcH
Q 025709 64 EFEYKMPLVWIDLEMTGLKI----EVDRILEIACIITD---GKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTK 136 (249)
Q Consensus 64 ~~~~~~~~V~lDlETTGL~p----~~d~IIEIgaVv~d---g~~~~~~~~~~~~I~p~~~~~~~~~~~~~~~h~~tGIt~ 136 (249)
++.....||+||+||||+++ ..++|||||||+++ |+. .+.|+.+|+|... ..++++++ .+||||+
T Consensus 5 m~~~~~~~vviD~ETTGl~~~~~~~~~~Iieigav~~~~~~g~i---~~~f~~lv~P~~~--~~i~~~~~---~i~GIt~ 76 (204)
T 1w0h_A 5 ADSYYDYICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEI---EDTFQQYVRPEIN--TQLSDFCI---SLTGITQ 76 (204)
T ss_dssp CCCSSSEEEECCCEECCCTTCCTTSCCCEEEEEEEEEETTTCSE---EEEEEEEBCCSSS--CSCCHHHH---HHHCCCH
T ss_pred CCCCcCEEEEEEEecCCcCCCCCCCCCcEEEEEEEEEECCCCEE---eeeeeeEECCCCC--CccCHHHH---HHhCCCH
Confidence 34446789999999999997 67999999999775 443 2468999999862 12367777 4569999
Q ss_pred HHHhcCCCHHHHHHHHHHHHhccc-CCCCcEEEEecHHHHHH-HHHHHHHhccCCCCC---ceeehhHHHHHHHHHCCCc
Q 025709 137 KVLHSGLTEREAEKQVVEFVKKNV-GTYTPLLAGNSVYVDFM-FLKKYMPDLASLFSH---VLVDVSSIKALCMRWYPRD 211 (249)
Q Consensus 137 ~~l~~~p~~~ea~~~~~~fl~~~~-~~~~~~lVghn~~FD~~-fL~~~~~~~~~~~~~---~~iD~~sl~~la~r~~p~~ 211 (249)
+++.++|++.+++.+|.+|+++.. ...+.++||||+.||+. ||++++.+++..++. +++|+. .++++++|..
T Consensus 77 ~~l~~~~~~~~v~~~~~~~l~~~~~~~~~~~lv~hn~~fD~~~~L~~~~~~~~~~~p~~~~~~~dt~---~l~~~~~~~~ 153 (204)
T 1w0h_A 77 DQVDRADTFPQVLKKVIDWMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPPFAKKWINIR---KSYGNFYKVP 153 (204)
T ss_dssp HHHHTSBCHHHHHHHHHHHHHHTTBTTTBCEEEEESSTTTTHHHHHHHHHHHTCCCCGGGSEEEEHH---HHHHHHHTCC
T ss_pred HHHhCCCCHHHHHHHHHHHHHhcCCCCCCcEEEEEECcchHHHHHHHHHHHhCCCCcccccceEEHH---HHHHHHhCCC
Confidence 999999999999999999999853 12234689999999997 999999888765543 799994 5566665531
Q ss_pred -c---------cCCCCCC-CCCcHHHHHHHHHHHHHHHHHHh
Q 025709 212 -Y---------RKVPSKE-QKHRALDDIRESIMELKYYKENI 242 (249)
Q Consensus 212 -~---------~~~l~~~-~~HrAl~Da~aT~~ll~~~~~~~ 242 (249)
. .++++.. .+|||++||++|++++..+.+..
T Consensus 154 ~~~~~L~~l~~~~gi~~~~~~H~Al~Da~~ta~l~~~l~~~~ 195 (204)
T 1w0h_A 154 RSQTKLTIMLEKLGMDYDGRPHCGLDDSKNIARIAVRMLQDG 195 (204)
T ss_dssp GGGCSHHHHHHHTTCCCCSCTTCHHHHHHHHHHHHHHHHHTT
T ss_pred CccchHHHHHHHcCCCCCCCccCcHHHHHHHHHHHHHHHHCC
Confidence 1 1355555 58999999999999999887653
No 7
>3mxm_B Three prime repair exonuclease 1; RNAse H-like fold, polyproline type II helix, hydrolase-DNA; HET: DNA; 1.75A {Mus musculus} SCOP: c.55.3.5 PDB: 3mxj_B 2ioc_B 3mxi_B* 3b6o_A* 2o4g_A* 3b6p_A* 2o4i_A 2oa8_A
Probab=99.96 E-value=1.3e-29 Score=221.68 Aligned_cols=168 Identities=19% Similarity=0.212 Sum_probs=130.9
Q ss_pred cCCcEEEEEEecCCCCCCCCceEEEEEEEEcCcE-e----------------eeeccceEEecCCCcccccchhhhhhhh
Q 025709 67 YKMPLVWIDLEMTGLKIEVDRILEIACIITDGKL-T----------------KSVEGPDLVIHQTKECLDSMGEWCQNHH 129 (249)
Q Consensus 67 ~~~~~V~lDlETTGL~p~~d~IIEIgaVv~dg~~-~----------------~~~~~~~~~I~p~~~~~~~~~~~~~~~h 129 (249)
.-.+|||||+||||+++.+|+|||||||.+++.. . .+.+.|+++|+|...+ ++.+.
T Consensus 10 ~~~~~vv~D~ETTGl~~~~d~IiEIgav~v~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~li~P~~~i----~~~~~--- 82 (242)
T 3mxm_B 10 HMQTLIFLDLEATGLPSSRPEVTELCLLAVHRRALENTSISQGHPPPVPRPPRVVDKLSLCIAPGKAC----SPGAS--- 82 (242)
T ss_dssp CCSEEEEEEEEESSCGGGCCCEEEEEEEEEEHHHHHTSCCCCSSSCCCCCCCSCCEEEEEECCCSSCC----CHHHH---
T ss_pred ccceEEEEEeecCCCCCCCCeeEEEEEEEecCCcccccccccccccccccccchhheeEEEECCCCCC----CHHHH---
Confidence 3578999999999999999999999999654321 0 1224688999998765 45555
Q ss_pred hccCCcHHHHhcC--CCHH-HHHHHHHHHHhcccCCCCcEEEEecH-HHHHHHHHHHHHhccCCCC---CceeehhHHHH
Q 025709 130 EASGLTKKVLHSG--LTER-EAEKQVVEFVKKNVGTYTPLLAGNSV-YVDFMFLKKYMPDLASLFS---HVLVDVSSIKA 202 (249)
Q Consensus 130 ~~tGIt~~~l~~~--p~~~-ea~~~~~~fl~~~~~~~~~~lVghn~-~FD~~fL~~~~~~~~~~~~---~~~iD~~sl~~ 202 (249)
.+||||++++.++ |++. +++.+|.+|+++.. .+.+|||||+ .||+.||++++.++|..++ ..++|+..+.+
T Consensus 83 ~i~GIt~~~l~~~g~p~~~~ev~~~~~~fl~~~~--~~~~lVaHNav~FD~~fL~~~~~r~g~~~~~~~~~~iDtl~l~r 160 (242)
T 3mxm_B 83 EITGLSKAELEVQGRQRFDDNLAILLRAFLQRQP--QPCCLVAHNGDRYDFPLLQTELARLSTPSPLDGTFCVDSIAALK 160 (242)
T ss_dssp HHHCCCHHHHHHTTCCCSCHHHHHHHHHHHHTSC--SSEEEEETTTTTTHHHHHHHHHHTSSSCCTTTTCEEEEHHHHHH
T ss_pred HhcCCCHHHHHhcCCCchhHHHHHHHHHHHhcCC--CCCEEEEcCChHhhHHHHHHHHHHcCCCCCccCCeEeehHHHHH
Confidence 5669999999988 8996 99999999999731 1247899995 9999999999999886542 37899977665
Q ss_pred -HHHHHCCC----cc---------c-CCCCCCCCCcHHHHHHHHHHHHHHHHHHhc
Q 025709 203 -LCMRWYPR----DY---------R-KVPSKEQKHRALDDIRESIMELKYYKENIF 243 (249)
Q Consensus 203 -la~r~~p~----~~---------~-~~l~~~~~HrAl~Da~aT~~ll~~~~~~~~ 243 (249)
+.++++|. .. . ++++..++|||++||++|+++++++.+.+.
T Consensus 161 ~l~~~~~p~~~~~~~~~~L~~l~~~~~gi~~~~~H~Al~Da~ata~l~~~~~~~~~ 216 (242)
T 3mxm_B 161 ALEQASSPSGNGSRKSYSLGSIYTRLYWQAPTDSHTAEGDDLTLLSICQWKPQALL 216 (242)
T ss_dssp HHHHHHCC------CCCSHHHHHHHHHSSCCSSTTSHHHHHHHHHHHHTSSHHHHH
T ss_pred HHHhhcCccccCCCCCcCHHHHHHHHhCCCCCCCcChHHHHHHHHHHHHHHHHHHH
Confidence 55565553 12 1 356777899999999999999999887765
No 8
>2xri_A ERI1 exoribonuclease 3; hydrolase, metal binding; 2.15A {Homo sapiens}
Probab=99.96 E-value=5.8e-29 Score=214.72 Aligned_cols=162 Identities=15% Similarity=0.218 Sum_probs=129.4
Q ss_pred CcEEEEEEecCCCCCCCC--ceEEEEEEEEcCcEeeeeccceEEecCCCcccccchhhhhhhhhccCCcHHHHhcCCCHH
Q 025709 69 MPLVWIDLEMTGLKIEVD--RILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTKKVLHSGLTER 146 (249)
Q Consensus 69 ~~~V~lDlETTGL~p~~d--~IIEIgaVv~dg~~~~~~~~~~~~I~p~~~~~~~~~~~~~~~h~~tGIt~~~l~~~p~~~ 146 (249)
..||+||+||||+++..+ +|||||||++++....+.+.|+.+|+|... ..++++++ .+||||+++++++|++.
T Consensus 31 ~~~vviD~ETTGl~~~~d~~~IieIgav~v~~~~~~i~~~f~~lV~P~~~--~~i~~~~~---~ltGIt~~~v~~a~~~~ 105 (224)
T 2xri_A 31 HYFLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVH--PQLTPFCT---ELTGIIQAMVDGQPSLQ 105 (224)
T ss_dssp SEEEEECCEECCCC-CCSSCCEEEEEEEEEETTTCCEEEEEEEECCCSSS--CSCCHHHH---HHHCCCHHHHTTCCCHH
T ss_pred CeEEEEEEEcCCCCCCCCCcceEEEEEEEEecCCcEEeeeeeeEECCCCC--CcCCHHHH---HHhCcCHHHHcCCCCHH
Confidence 679999999999999875 999999997765422233568999999762 12467777 55699999999999999
Q ss_pred HHHHHHHHHHhcccCCCCcEEEEecH--------HHHHHH-HHHHHHhccCCCC---CceeehhHHHHHHHHHCCCcc--
Q 025709 147 EAEKQVVEFVKKNVGTYTPLLAGNSV--------YVDFMF-LKKYMPDLASLFS---HVLVDVSSIKALCMRWYPRDY-- 212 (249)
Q Consensus 147 ea~~~~~~fl~~~~~~~~~~lVghn~--------~FD~~f-L~~~~~~~~~~~~---~~~iD~~sl~~la~r~~p~~~-- 212 (249)
+|+.+|.+|+++. ++||||+ .||+.| |++++.+.+..++ .+++|++..++++++++|...
T Consensus 106 ~v~~~f~~~l~~~------~lv~hn~~~~~~t~g~fD~~fll~~~~~~~g~~~p~~~~~~iD~~~~~~~~~~~~p~~~L~ 179 (224)
T 2xri_A 106 QVLERVDEWMAKE------GLLDPNVKSIFVTCGDWDLKVMLPGQCQYLGLPVADYFKQWINLKKAYSFAMGCWPKNGLL 179 (224)
T ss_dssp HHHHHHHHHHHHT------TTTSTTSCEEEEESSSHHHHTHHHHHHHHHTCCCCGGGSCEEEHHHHHHHHHTSCCTTTHH
T ss_pred HHHHHHHHHHhhc------ccccCCCceEEEEeChhhHHHHHHHHHHHhCCCCcccccceEeHHHHHHHHhccCCCCCHH
Confidence 9999999999984 4688998 999997 7788888876554 379998877888888877521
Q ss_pred ----cCCCCC-CCCCcHHHHHHHHHHHHHHHHHH
Q 025709 213 ----RKVPSK-EQKHRALDDIRESIMELKYYKEN 241 (249)
Q Consensus 213 ----~~~l~~-~~~HrAl~Da~aT~~ll~~~~~~ 241 (249)
.++++. +.+|||++||++|++++..+.+.
T Consensus 180 ~l~~~~gi~~~~~~H~Al~DA~~ta~l~~~l~~~ 213 (224)
T 2xri_A 180 DMNKGLSLQHIGRPHSGIDDCKNIANIMKTLAYR 213 (224)
T ss_dssp HHHHHTTCCCCSCTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCCCCCCCcChHHHHHHHHHHHHHHHHc
Confidence 245555 46899999999999999988754
No 9
>3u3y_B Three prime repair exonuclease 1; RNAse H fold, 3' exonuclease, homodimer, hydrolase-DNA compl; HET: BU1; 2.28A {Mus musculus} PDB: 3u6f_B*
Probab=99.96 E-value=2.9e-29 Score=226.95 Aligned_cols=167 Identities=19% Similarity=0.224 Sum_probs=131.7
Q ss_pred CCcEEEEEEecCCCCCCCCceEEEEEEEEcCcE-e----------------eeeccceEEecCCCcccccchhhhhhhhh
Q 025709 68 KMPLVWIDLEMTGLKIEVDRILEIACIITDGKL-T----------------KSVEGPDLVIHQTKECLDSMGEWCQNHHE 130 (249)
Q Consensus 68 ~~~~V~lDlETTGL~p~~d~IIEIgaVv~dg~~-~----------------~~~~~~~~~I~p~~~~~~~~~~~~~~~h~ 130 (249)
-.+|||||+||||+++.+|+|||||+|.+++.. . .+.+.|+++|+|...+ ++.+. .
T Consensus 11 ~~tfVv~DlETTGL~~~~d~IIEIgaV~v~~~~l~~~~~~~g~~~~~~~~~~v~~~~~~lI~P~~~I----~~~a~---~ 83 (314)
T 3u3y_B 11 MQTLIFLDLEATGLPSSRPEVTELCLLAVHRRALENTSISQGHPPPVPRPPRVVDKLSLCIAPGKAC----SPGAS---E 83 (314)
T ss_dssp CSEEEEEEEEESSCGGGCCCEEEEEEEEEEHHHHHC--CCCSSSCCCCCCCSSCEEEEEECBCSSCC----CHHHH---H
T ss_pred cCCEEEEEEECCCCCCCCCeEEEEEEEEEECCccccccccccccccccccceeeeeEEEEECCCCCC----CHHHH---H
Confidence 567999999999999999999999999665331 0 1235689999998765 44554 5
Q ss_pred ccCCcHHHHhcC--CCH-HHHHHHHHHHHhcccCCCCcEEEEec-HHHHHHHHHHHHHhccCCCC---CceeehhHHHH-
Q 025709 131 ASGLTKKVLHSG--LTE-REAEKQVVEFVKKNVGTYTPLLAGNS-VYVDFMFLKKYMPDLASLFS---HVLVDVSSIKA- 202 (249)
Q Consensus 131 ~tGIt~~~l~~~--p~~-~ea~~~~~~fl~~~~~~~~~~lVghn-~~FD~~fL~~~~~~~~~~~~---~~~iD~~sl~~- 202 (249)
+||||+++++++ |++ .+++.+|.+|+++.. .+.+||||| +.||+.||++++.+++..++ +..+|+..+++
T Consensus 84 IhGIT~e~l~~aG~P~f~~ev~~~l~~fL~~~~--~~~vLVAHNga~FD~~FL~~el~r~Gl~~~~~~~~~iDTL~l~r~ 161 (314)
T 3u3y_B 84 ITGLSKAELEVQGRQRFDDNLAILLRAFLQRQP--QPCCLVAHNGDRYDFPLLQTELARLSTPSPLDGTFCVDSIAALKA 161 (314)
T ss_dssp HHSCCHHHHHHTTCCBSCHHHHHHHHHHHHTSC--SSEEEEETTTTTTHHHHHHHHHHTSSSCCTTTTCEEEEHHHHHHH
T ss_pred hcCCCHHHHHhCCCCCcHHHHHHHHHHHHhcCC--CCcEEEEeCcHHHHHHHHHHHHHHcCCCCCCCCceEEeHHHHHHH
Confidence 569999999998 889 799999999999731 124799999 99999999999999886543 45899987665
Q ss_pred HHHHHCCCc----c---------c-CCCCCCCCCcHHHHHHHHHHHHHHHHHHhc
Q 025709 203 LCMRWYPRD----Y---------R-KVPSKEQKHRALDDIRESIMELKYYKENIF 243 (249)
Q Consensus 203 la~r~~p~~----~---------~-~~l~~~~~HrAl~Da~aT~~ll~~~~~~~~ 243 (249)
++++++|.. . . ++++..++|||++||++|+++++++.+.++
T Consensus 162 L~r~~~P~~~~~~~~~~L~~L~~~l~gi~~~~aHrAl~DA~ata~lf~~l~~~~l 216 (314)
T 3u3y_B 162 LEQASSPSGNGSRKSYSLGSIYTRLYWQAPTDSHTAEGHVLTLLSICQWKPQALL 216 (314)
T ss_dssp HHTTC-------CCCCSHHHHHHHHHSSCCSCSSSHHHHHHHHHHHHHSSHHHHH
T ss_pred HHHHhCccccccCCCCCHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 777777752 1 1 356777899999999999999999888774
No 10
>1y97_A Three prime repair exonuclease 2; TREX2, hydrolase; 2.50A {Homo sapiens} SCOP: c.55.3.5
Probab=99.96 E-value=1.4e-28 Score=213.26 Aligned_cols=166 Identities=15% Similarity=0.143 Sum_probs=126.6
Q ss_pred ccCCcEEEEEEecCCCCCCCCceEEEEEEEEcCcE--------------eeeeccceEEecCCCcccccchhhhhhhhhc
Q 025709 66 EYKMPLVWIDLEMTGLKIEVDRILEIACIITDGKL--------------TKSVEGPDLVIHQTKECLDSMGEWCQNHHEA 131 (249)
Q Consensus 66 ~~~~~~V~lDlETTGL~p~~d~IIEIgaVv~dg~~--------------~~~~~~~~~~I~p~~~~~~~~~~~~~~~h~~ 131 (249)
....+|||||+||||+++..++|||||+|.+++.. ..+.+.|+.+|+|...+ +++++ .+
T Consensus 7 ~~~~~~v~iD~ETTGl~~~~~~IieIg~v~~~~~~~~~~~~~~~~~~~~~~i~~~f~~lv~P~~~i----~~~~~---~i 79 (238)
T 1y97_A 7 PRAETFVFLDLEATGLPSVEPEIAELSLFAVHRSSLENPEHDESGALVLPRVLDKLTLCMCPERPF----TAKAS---EI 79 (238)
T ss_dssp CCCSEEEEEEEEESSCGGGCCCEEEEEEEEEEHHHHTSCBC---CCCBCCSSCEEEEEECCCSSCC----CHHHH---HH
T ss_pred CccCeEEEEEeeCCCcCCCCCcEEEEEEEEecccccccccccccccccccccceeeEEEECCCCcC----CHHHH---HH
Confidence 44578999999999999999999999999766431 01224689999998754 56676 45
Q ss_pred cCCcHHHH--hcCCCH-HHHHHHHHHHHhcccCCCCcEEEEecH-HHHHHHHHHHHHhccCCCC--CceeehhHHHHHHH
Q 025709 132 SGLTKKVL--HSGLTE-REAEKQVVEFVKKNVGTYTPLLAGNSV-YVDFMFLKKYMPDLASLFS--HVLVDVSSIKALCM 205 (249)
Q Consensus 132 tGIt~~~l--~~~p~~-~ea~~~~~~fl~~~~~~~~~~lVghn~-~FD~~fL~~~~~~~~~~~~--~~~iD~~sl~~la~ 205 (249)
||||++++ .++|++ .+++.+|.+|++... ++.++||||+ .||+.||++++++++..++ ++++|+. .+++
T Consensus 80 ~GIt~~~l~~~~~p~f~~~v~~~l~~fl~~~~--~~~~lVahN~~~FD~~fL~~~~~~~g~~~~~~~~~iDt~---~l~~ 154 (238)
T 1y97_A 80 TGLSSEGLARCRKAGFDGAVVRTLQAFLSRQA--GPICLVAHNGFDYDFPLLCAELRRLGARLPRDTVCLDTL---PALR 154 (238)
T ss_dssp HCCCHHHHHHTTCCCSCHHHHHHHHHHHTTSC--SSEEEEETTTTTTHHHHHHHHHHHHTCCCCTTCEEEEHH---HHHH
T ss_pred hCCCHHHHhhcCCCccHHHHHHHHHHHHHhCC--CCCEEEecCchhhhHHHHHHHHHHcCCCCCCCCEEEEHH---HHHH
Confidence 69999999 577888 489999999998631 1257999999 9999999999999887665 5789984 4566
Q ss_pred HHC---------CCccc----------CCCCCCCCCcHHHHHHHHHHHHHHHHHHhc
Q 025709 206 RWY---------PRDYR----------KVPSKEQKHRALDDIRESIMELKYYKENIF 243 (249)
Q Consensus 206 r~~---------p~~~~----------~~l~~~~~HrAl~Da~aT~~ll~~~~~~~~ 243 (249)
+++ |.... ++++...+|||++||++|+++++++.+.++
T Consensus 155 ~~~~~~~p~~~~p~~~~~~L~~l~~~~~gi~~~~~H~Al~Da~~ta~l~~~l~~~~~ 211 (238)
T 1y97_A 155 GLDRAHSHGTRARGRQGYSLGSLFHRYFRAEPSAAHSAEGDVHTLLLIFLHRAAELL 211 (238)
T ss_dssp HHHHHC----------CCSHHHHHHHHHSSCCC---CHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHhccCccccCCCCCCCCHHHHHHHHhCCCCccCccHHHHHHHHHHHHHHHHHHHH
Confidence 664 43221 356677899999999999999999988765
No 11
>2f96_A Ribonuclease T; RNAse, RNT, RNAse T, tRNA hydrolase, SAD, PS protein structure initiative, midwest center for structural genomics; 2.09A {Pseudomonas aeruginosa} SCOP: c.55.3.5
Probab=99.96 E-value=5.3e-28 Score=208.30 Aligned_cols=166 Identities=18% Similarity=0.157 Sum_probs=128.9
Q ss_pred CCcEEEEEEecCCCCCCCCceEEEEEEEE----cCcEeeeeccceEEecCCCcccccchhhhhhhhhccCCcHH-HHhcC
Q 025709 68 KMPLVWIDLEMTGLKIEVDRILEIACIIT----DGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTKK-VLHSG 142 (249)
Q Consensus 68 ~~~~V~lDlETTGL~p~~d~IIEIgaVv~----dg~~~~~~~~~~~~I~p~~~~~~~~~~~~~~~h~~tGIt~~-~l~~~ 142 (249)
...||+||+||||++|..++|||||+|.+ +|++. +.+.|+.+|+|.... .++++++ .+||||++ ++.++
T Consensus 28 ~~~~vviD~ETTGl~~~~~~IieIg~v~~~~~~~g~i~-~~~~f~~lV~P~~~~--~i~~~~~---~ihGIt~e~~v~~~ 101 (224)
T 2f96_A 28 GYLPVVVDVETGGFNSATDALLEIAATTVGMDEKGFLF-PEHTYFFRIEPFEGA--NIEPAAL---EFTGIKLDHPLRMA 101 (224)
T ss_dssp TEEEEEEEEEESSSCTTTBCEEEEEEEEEEECTTSCEE-EEEEEEEEBCCCTTC--BCCHHHH---HHHTCCTTCTTCCC
T ss_pred CCcEEEEEeeCCCCCCCCCeeEEEEEEEEEEcCCCccc-ccceEEEEECCCCCC--CCCHHHH---HHhCCCHHHHHhcC
Confidence 46899999999999999999999999965 45543 345789999995311 2367777 45699997 58999
Q ss_pred CCHHHHHHHHHHHHhcccC---CCCcEEEEecHHHHHHHHHHHHHhccCC---C-CCceeehhHHHHHHHHHCCCcc---
Q 025709 143 LTEREAEKQVVEFVKKNVG---TYTPLLAGNSVYVDFMFLKKYMPDLASL---F-SHVLVDVSSIKALCMRWYPRDY--- 212 (249)
Q Consensus 143 p~~~ea~~~~~~fl~~~~~---~~~~~lVghn~~FD~~fL~~~~~~~~~~---~-~~~~iD~~sl~~la~r~~p~~~--- 212 (249)
+++.+++.+|.+|++++.. .+..++||||+.||+.||++++.+++.. + +++++|+ +.++++++|...
T Consensus 102 ~~~~~v~~~~~~~l~~~~~~~~~~~~~lV~hn~~FD~~fL~~~~~~~g~~~~p~~~~~~iDt---~~l~~~~~~~~~L~~ 178 (224)
T 2f96_A 102 VQEEAALTEIFRGIRKALKANGCKRAILVGHNSSFDLGFLNAAVARTGIKRNPFHPFSSFDT---ATLAGLAYGQTVLAK 178 (224)
T ss_dssp BCHHHHHHHHHHHHHHHHHHTTCSEEEEEETTHHHHHHHHHHHHHHHTCCCCCEEEEEEEEH---HHHHHHHHSCCSHHH
T ss_pred CCHHHHHHHHHHHHHHHhhhcccCCCEEEEeChhhhHHHHHHHHHHcCCCcCCccccceeeH---HHHHHHHcCCCCHHH
Confidence 9999999999999974321 0125799999999999999999888754 2 3578999 456777766431
Q ss_pred ---cCCCCC--CCCCcHHHHHHHHHHHHHHHHHHh
Q 025709 213 ---RKVPSK--EQKHRALDDIRESIMELKYYKENI 242 (249)
Q Consensus 213 ---~~~l~~--~~~HrAl~Da~aT~~ll~~~~~~~ 242 (249)
.++++. ..+|||++||++|+++++.+.+.+
T Consensus 179 l~~~~gi~~~~~~~H~Al~Da~~ta~l~~~l~~~~ 213 (224)
T 2f96_A 179 ACQAAGMEFDNREAHSARYDTEKTAELFCGIVNRW 213 (224)
T ss_dssp HHHHTTCCCCTTSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCcCCCCCCChHHHHHHHHHHHHHHHHHH
Confidence 245553 479999999999999999988765
No 12
>3v9w_A Ribonuclease T; DEDD nucleases family, EXO-nucleases, hydrolase-DNA complex; HET: DNA; 1.70A {Escherichia coli} PDB: 3ngy_A 3v9u_A* 3ngz_A* 3va3_A* 3v9z_A* 3nh0_A 3nh2_A 3nh1_A* 3v9s_A* 3v9x_A* 3va0_A* 2is3_A
Probab=99.95 E-value=4.2e-27 Score=203.87 Aligned_cols=170 Identities=16% Similarity=0.134 Sum_probs=132.5
Q ss_pred ccCCcEEEEEEecCCCCCCCCceEEEEEEEE----cCcEeeeeccceEEecCCCcccccchhhhhhhhhccCCcHH-HHh
Q 025709 66 EYKMPLVWIDLEMTGLKIEVDRILEIACIIT----DGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTKK-VLH 140 (249)
Q Consensus 66 ~~~~~~V~lDlETTGL~p~~d~IIEIgaVv~----dg~~~~~~~~~~~~I~p~~~~~~~~~~~~~~~h~~tGIt~~-~l~ 140 (249)
.....||+||+||||++|..++|||||+|.+ +|++. ..+.|+.+|+|.... .++++++ .+||||++ ++.
T Consensus 34 l~~~~~vviD~ETTGl~~~~~~IieIgav~~~~~~~g~i~-~~~~f~~~v~P~~~~--~i~~~~~---~i~GIt~e~~v~ 107 (235)
T 3v9w_A 34 FRGFYPVVIDVETAGFNAKTDALLEIAAITLKMDEQGWLM-PDTTLHFHVEPFVGA--NLQPEAL---AFNGIDPNDPDR 107 (235)
T ss_dssp TTTEEEEEEEEEESSSCTTTBCEEEEEEEEEEECTTSCEE-EEEEEEEEBCCCTTC--BCCHHHH---HHHCCCTTCGGG
T ss_pred ccCCcEEEEEEeCCCCCCCCCeEEEEEEEEEEEcCCCccc-ccceEEEEECCCCCC--CCCHHHH---HHhCCCHHHHHh
Confidence 3456899999999999999999999999965 45543 346789999995322 2366776 55699998 999
Q ss_pred cCCCHHHHHHHHHHHHhcccCC---CCcEEEEecHHHHHHHHHHHHHhccCCC---C-CceeehhHHHHHHHHHCCCcc-
Q 025709 141 SGLTEREAEKQVVEFVKKNVGT---YTPLLAGNSVYVDFMFLKKYMPDLASLF---S-HVLVDVSSIKALCMRWYPRDY- 212 (249)
Q Consensus 141 ~~p~~~ea~~~~~~fl~~~~~~---~~~~lVghn~~FD~~fL~~~~~~~~~~~---~-~~~iD~~sl~~la~r~~p~~~- 212 (249)
+++++.+++.+|.+|++++... +..++||||+.||+.||++.+.+++... + ++++|+ +.+++.++|...
T Consensus 108 ~~~~~~~vl~~~~~~l~~~~~~~~~~~~~lVahN~~fD~~~L~~~~~~~g~~~~p~~~~~~~Dt---~~la~~~~p~~~L 184 (235)
T 3v9w_A 108 GAVSGYEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERASLKRNPFHPFATFDT---AALAGLALGQTVL 184 (235)
T ss_dssp CCBCHHHHHHHHHHHHHHHHTTTTCCEEEEEETTTHHHHHHHHHHHHHTTCCCCCEEEEEEEEH---HHHHHHHHSCCSH
T ss_pred cCCCHHHHHHHHHHHHHHHhhhccCCCcEEEEeChHHHHHHHHHHHHHcCCCCCCCCCCcEEEh---HHHHHHHhCCCCH
Confidence 9999999999999999754321 2357999999999999999999888633 2 468999 456777777521
Q ss_pred -----cCCCCC--CCCCcHHHHHHHHHHHHHHHHHHhcC
Q 025709 213 -----RKVPSK--EQKHRALDDIRESIMELKYYKENIFK 244 (249)
Q Consensus 213 -----~~~l~~--~~~HrAl~Da~aT~~ll~~~~~~~~~ 244 (249)
.++++. ..+|+|++||++|++|+..+.+.+-.
T Consensus 185 ~~l~~~~gi~~~~~~~H~Al~DA~~ta~l~~~l~~~l~~ 223 (235)
T 3v9w_A 185 SKACQTAGMDFDSTQAHSALYDTERTAVLFCEIVNRWKR 223 (235)
T ss_dssp HHHHHHHTCCCCTTTTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCCCCcChHHHHHHHHHHHHHHHHHHHh
Confidence 134443 36999999999999999999887643
No 13
>1wlj_A Interferon stimulated gene 20KDA; exoribonuclease, hydrolase; HET: U5P; 1.90A {Homo sapiens} SCOP: c.55.3.5
Probab=99.94 E-value=2.2e-27 Score=199.68 Aligned_cols=154 Identities=19% Similarity=0.226 Sum_probs=117.4
Q ss_pred CCcEEEEEEecCCCCCCCC-ceEEEEEEEEcCcEeeeeccceEEecCCCcccccchhhhhhhhhccCCcHHHHhcCCCHH
Q 025709 68 KMPLVWIDLEMTGLKIEVD-RILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTKKVLHSGLTER 146 (249)
Q Consensus 68 ~~~~V~lDlETTGL~p~~d-~IIEIgaVv~dg~~~~~~~~~~~~I~p~~~~~~~~~~~~~~~h~~tGIt~~~l~~~p~~~ 146 (249)
..+||+||+||||++|..+ +|+|||+|..+|+.. |+.+|+|..++ +++++ .+||||++++.++|++.
T Consensus 4 ~~~~vviD~ETTGl~~~~~~~iiei~~v~~~g~~i-----~~~lV~P~~~i----~~~~~---~i~GIt~~~l~~a~~~~ 71 (189)
T 1wlj_A 4 SREVVAMDCEMVGLGPHRESGLARCSLVNVHGAVL-----YDKFIRPEGEI----TDYRT---RVSGVTPQHMVGATPFA 71 (189)
T ss_dssp --CEEEEEEEEEEETTTTEEEEEEEEEECTTCCEE-----EEEEEECSSCE----EECCH---HHHCCCHHHHTTCEEHH
T ss_pred CCeEEEEEeECcCcCCCCCceEEEEEEEeCCCCEE-----EeeEecCCCCC----Ccccc---CCCCCCHHHHcCCCCHH
Confidence 4689999999999999874 778999986566543 67899998755 45666 45699999999999999
Q ss_pred HHHHHHHHHHhcccCCCCcEEEEecHHHHHHHHHHHHHhccCCCCCceeehhHHHHHHHH-HCCCcc---------c-CC
Q 025709 147 EAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMR-WYPRDY---------R-KV 215 (249)
Q Consensus 147 ea~~~~~~fl~~~~~~~~~~lVghn~~FD~~fL~~~~~~~~~~~~~~~iD~~sl~~la~r-~~p~~~---------~-~~ 215 (249)
+++.+|.+|+++ .+|||||+.||+.||++.+++ +.++|+..+....+. .+|... . ++
T Consensus 72 ~v~~~~~~~l~~------~~lV~hn~~fD~~~L~~~~~~------~~~idt~~~~~~~~~~~~p~~~~~~L~~l~~~~lg 139 (189)
T 1wlj_A 72 VARLEILQLLKG------KLVVGHDLKHDFQALKEDMSG------YTIYDTSTDRLLWREAKLDHCRRVSLRVLSERLLH 139 (189)
T ss_dssp HHHHHHHHHHTT------SEEEESSHHHHHHHTTCCCTT------CEEEEGGGCHHHHHHHTC-----CCHHHHHHHHTC
T ss_pred HHHHHHHHHHCC------CEEEECCcHHHHHHHHHhCCC------CceechHhhhhhhhcccCCCCCCccHHHHHHHHcC
Confidence 999999999986 479999999999999976542 468999765432221 333211 1 35
Q ss_pred CCCCC---CCcHHHHHHHHHHHHHHHHHHhcCc
Q 025709 216 PSKEQ---KHRALDDIRESIMELKYYKENIFKT 245 (249)
Q Consensus 216 l~~~~---~HrAl~Da~aT~~ll~~~~~~~~~~ 245 (249)
++... +|||++||++|+++++++++.+...
T Consensus 140 i~~~~~~~~H~Al~Da~ata~l~~~l~~~~~~~ 172 (189)
T 1wlj_A 140 KSIQNSLLGHSSVEDARATMELYQISQRIRARR 172 (189)
T ss_dssp CCCSCCTTCCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCcCcHHHHHHHHHHHHHHHHHHHHh
Confidence 55544 9999999999999999998876543
No 14
>1zbh_A 3'-5' exonuclease ERI1; histone mRNA 3'-END-specific recognition, structures of 3'- exonuclease and ITS RNA complex, hydrolase/RNA complex; HET: AMP; 3.00A {Homo sapiens}
Probab=99.94 E-value=1.6e-26 Score=207.74 Aligned_cols=167 Identities=16% Similarity=0.173 Sum_probs=128.0
Q ss_pred cCCcEEEEEEecCCCC----CCCCceEEEEEEEEcCc-EeeeeccceEEecCCCcccccchhhhhhhhhccCCcHHHHhc
Q 025709 67 YKMPLVWIDLEMTGLK----IEVDRILEIACIITDGK-LTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTKKVLHS 141 (249)
Q Consensus 67 ~~~~~V~lDlETTGL~----p~~d~IIEIgaVv~dg~-~~~~~~~~~~~I~p~~~~~~~~~~~~~~~h~~tGIt~~~l~~ 141 (249)
....||+||+||||++ +..++|||||||.+++. .. +.+.|+.+|+|... ..++++++ .+||||++++.+
T Consensus 76 ~~~~~vviD~ETTGl~~~~~~~~~~IIeIgaV~v~~~~g~-i~~~f~~lV~P~~~--~~i~~~~~---~ihGIt~e~v~~ 149 (299)
T 1zbh_A 76 YYDYICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLE-IEDTFQQYVRPEIN--TQLSDFCI---SLTGITQDQVDR 149 (299)
T ss_dssp SCSEEEEECCEECCCTTCCTTCCCCEEEEEEEEEETTTCC-EEEEEEEEBCCSSS--CSCCHHHH---HHHCCCHHHHHT
T ss_pred CCceEEEEEeecccCCCCCCCCCCceEEEEEEEEECCCCe-EeeeeeeeecCCCC--CCCCHHHH---HHhCCCHHHHhc
Confidence 3578999999999997 56799999999977653 32 23569999999862 12367887 455999999999
Q ss_pred CCCHHHHHHHHHHHHhcc-cCCCCcEEEEecHHHHHH-HHHHHHHhccCCCC---CceeehhHHHHHHHHHC--CC----
Q 025709 142 GLTEREAEKQVVEFVKKN-VGTYTPLLAGNSVYVDFM-FLKKYMPDLASLFS---HVLVDVSSIKALCMRWY--PR---- 210 (249)
Q Consensus 142 ~p~~~ea~~~~~~fl~~~-~~~~~~~lVghn~~FD~~-fL~~~~~~~~~~~~---~~~iD~~sl~~la~r~~--p~---- 210 (249)
+|++.+|+.+|.+|+++. .+....++||||+.||+. ||++++.+++..++ +.++|+..++ ++++ |.
T Consensus 150 ap~~~evl~~f~~~l~~~~~~~~~~~lVahn~~fD~~~fL~~~~~~~g~~~p~~~~~~iDt~~l~---~~~~~~~~~~~~ 226 (299)
T 1zbh_A 150 ADTFPQVLKKVIDLMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSY---GNFYKVPRSQTK 226 (299)
T ss_dssp SBCHHHHHHHHHHHHHHTTBTTTBCEEEEESSSHHHHTHHHHHHHHTTBCCCGGGSEEEEHHHHH---HHHHTCCGGGCS
T ss_pred CCCHHHHHHHHHHHHhhcccCCCCcEEEEEeCHHHHHHHHHHHHHHcCCCCCcccchHHHHHHHH---HHHhCCCCCCcc
Confidence 999999999999999974 111124789999999999 99999988876544 4799995443 3332 21
Q ss_pred c----ccCCCCCC-CCCcHHHHHHHHHHHHHHHHHHh
Q 025709 211 D----YRKVPSKE-QKHRALDDIRESIMELKYYKENI 242 (249)
Q Consensus 211 ~----~~~~l~~~-~~HrAl~Da~aT~~ll~~~~~~~ 242 (249)
+ ..++++.. .+|||++||++|+++++.+.+..
T Consensus 227 L~~l~~~~gi~~~g~~H~Al~DA~ata~l~~~l~~~~ 263 (299)
T 1zbh_A 227 LTIMLEKLGMDYDGRPNCGLDDSKNIARIAVRMLQDG 263 (299)
T ss_dssp HHHHHHHTTCCCCSCTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCCCCCCCChHHHHHHHHHHHHHHHHhC
Confidence 1 12456655 58999999999999999987754
No 15
>3cg7_A CRN-4, cell death-related nuclease 4; hydrolase, apoptosis, 3'-5' exonuclease, deddh; 2.50A {Caenorhabditis elegans} PDB: 3cm5_A 3cm6_A
Probab=99.94 E-value=7.4e-27 Score=210.95 Aligned_cols=161 Identities=13% Similarity=0.053 Sum_probs=124.0
Q ss_pred cCCcEEEEEEecCCCCCCCC---ceEEEEEEEEcC-cEeee-eccceEEecCCCcccccchhhhhhhhhccCCcHHHHhc
Q 025709 67 YKMPLVWIDLEMTGLKIEVD---RILEIACIITDG-KLTKS-VEGPDLVIHQTKECLDSMGEWCQNHHEASGLTKKVLHS 141 (249)
Q Consensus 67 ~~~~~V~lDlETTGL~p~~d---~IIEIgaVv~dg-~~~~~-~~~~~~~I~p~~~~~~~~~~~~~~~h~~tGIt~~~l~~ 141 (249)
....||+||+||||+++..| +|||||||++|. ..... .+.|+.+|+|.... .++++++ .+||||++++.+
T Consensus 17 ~~~~~vviD~ETTGl~~~~d~~~eIIEIgaV~vd~~~g~i~~~~~f~~lV~P~~~p--~i~~~~~---~ltGIt~e~v~~ 91 (308)
T 3cg7_A 17 PFDTLLILDFETTSDAANQDYPCEVIQFAIVAYDVPNDKIREDISFNKYVKPVLNR--TLTKNCV---DFTGIPQRSIDT 91 (308)
T ss_dssp CCSEEEEEEEEECCBTTBCSCCCCEEEEEEEEEETTTTEEEEEEEEEEECBCSSBC--SCCHHHH---HHHCCCHHHHHT
T ss_pred CCCeEEEEEeecCCCCCCCCCCCCeEEEEEEEEEcCCCEEeeccceeeEECCCCCC--CCCHHHH---HHcCCCHHHHhc
Confidence 45789999999999999877 999999998754 22211 23689999998741 2367777 556999999999
Q ss_pred CCCHHHHHHHHHHHHhcccCCCCcEEEEecH------HHHH-HHHHHHHHhccCCCC---CceeehhHHHHHHHHHCCCc
Q 025709 142 GLTEREAEKQVVEFVKKNVGTYTPLLAGNSV------YVDF-MFLKKYMPDLASLFS---HVLVDVSSIKALCMRWYPRD 211 (249)
Q Consensus 142 ~p~~~ea~~~~~~fl~~~~~~~~~~lVghn~------~FD~-~fL~~~~~~~~~~~~---~~~iD~~sl~~la~r~~p~~ 211 (249)
+|++.+|+.+|.+|+++. ++||||+ .||+ .||++++.+.+..++ ++++|+..+ +++++|..
T Consensus 92 ap~~~evl~~f~~~l~~~------~lvahn~~lv~~g~fD~~~fL~~~~~~~g~~~p~~~~~~iDt~~l---~~~~~~~~ 162 (308)
T 3cg7_A 92 ADTFDVVYEQFQQWLITL------GLEEGKFAFVCDSRQDLWRIAQYQMKLSNIQMPAFFRQYINLYKI---FTNEMDRM 162 (308)
T ss_dssp SCBHHHHHHHHHHHHHHH------CCCTTSEEEEESSSHHHHTHHHHHHHHTTCCCCGGGSEEEEHHHH---HHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhC------CcCCcceEEeccCcccHHHHHHHHHHHcCCCCchhhcceeeHHHH---HHHHhccc
Confidence 999999999999999984 3567777 9999 799999988876655 468999544 44443321
Q ss_pred c---------------cCCCCCCC-CCcHHHHHHHHHHHHHHHHHH
Q 025709 212 Y---------------RKVPSKEQ-KHRALDDIRESIMELKYYKEN 241 (249)
Q Consensus 212 ~---------------~~~l~~~~-~HrAl~Da~aT~~ll~~~~~~ 241 (249)
. .++++... +|||++||++|++++..+.+.
T Consensus 163 ~~~~~~~~~~L~~l~~~~gi~~~~~~HrAl~DA~ata~l~~~l~~~ 208 (308)
T 3cg7_A 163 GPKELSATTNIGKMNEYYDLPTIGRAHDAMDDCLNIATILQRMINM 208 (308)
T ss_dssp CCCCCCCCSHHHHHHHHTTCCCCSCTTCHHHHHHHHHHHHHHHHHT
T ss_pred cccccccCcCHHHHHHHcCCCCCCCCcCHHHHHHHHHHHHHHHHHc
Confidence 1 23555555 499999999999999988764
No 16
>2qxf_A Exodeoxyribonuclease I; alpha-beta domain, DNAQ superfamily, SH3-like domain, produc structure, DNA damage, DNA repair, exonuclease; HET: TMP; 1.50A {Escherichia coli} SCOP: c.55.3.5 PDB: 1fxx_A* 3c94_A 3c95_A 3hl8_A* 3hp9_A*
Probab=99.93 E-value=6.9e-26 Score=215.61 Aligned_cols=165 Identities=16% Similarity=0.142 Sum_probs=125.1
Q ss_pred CCcEEEEEEecCCCCCCCCceEEEEEEEEcCcEeeeeccceEEecCCCcccccchhhhhhhhhccCCcHHHHhcCC-CHH
Q 025709 68 KMPLVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTKKVLHSGL-TER 146 (249)
Q Consensus 68 ~~~~V~lDlETTGL~p~~d~IIEIgaVv~dg~~~~~~~~~~~~I~p~~~~~~~~~~~~~~~h~~tGIt~~~l~~~p-~~~ 146 (249)
..+|||||+||||++|..++|||||+|.++++...+++.|+.+|+|...+.. .++++ .+||||++++.+++ .+.
T Consensus 8 ~~~~vv~DlETTGl~p~~d~IIEIgaV~vd~~g~ii~~~f~~lVkP~~~ilp-~p~a~----~IhGIT~e~l~~ap~~~~ 82 (482)
T 2qxf_A 8 QSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLP-QPGAV----LITGITPQEARAKGENEA 82 (482)
T ss_dssp CCEEEEEEEEESSSCTTTSCEEEEEEEEECTTSCBCSCCEEEEBCCCTTCCC-CHHHH----HHHCCCHHHHHHHCBCHH
T ss_pred CCCEEEEEEECCCCCCCCCeEEEEEEEEEECCCeEEeeeeEEEECCCCCCCC-CHHHH----HHhCCCHHHHhcCCCCHH
Confidence 4689999999999999999999999998875554455559999999876521 13333 45699999998654 569
Q ss_pred HHHHHHHHHHhcccCCCCcEEEEec-HHHHHHHHHHHHHhccC-CCC------CceeehhHHHHHHHHHCC---------
Q 025709 147 EAEKQVVEFVKKNVGTYTPLLAGNS-VYVDFMFLKKYMPDLAS-LFS------HVLVDVSSIKALCMRWYP--------- 209 (249)
Q Consensus 147 ea~~~~~~fl~~~~~~~~~~lVghn-~~FD~~fL~~~~~~~~~-~~~------~~~iD~~sl~~la~r~~p--------- 209 (249)
+++.+|.+|++.. ..++|||| +.||+.||++.+.+.+. +++ +..+|+..+.+.+..+.|
T Consensus 83 evl~~f~~~l~~~----~~~lVaHNs~~FD~~fL~~~~~r~g~~~~~~~w~~~~~~iDtl~l~r~~~~~~~~~~~wP~~~ 158 (482)
T 2qxf_A 83 AFAARIHSLFTVP----KTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPEND 158 (482)
T ss_dssp HHHHHHHHHHTST----TEEEEESSTTTTHHHHHHHHHHHTTSCSSGGGTGGGCEEEEHHHHHHHHHHHCCTTSCCCBCT
T ss_pred HHHHHHHHHHcCC----CCEEEEECCHHHHHHHHHHHHHHhCCCccccccccCCceeeHHHHHHHHHHhCcccccCcccc
Confidence 9999999999831 14789999 89999999999988764 233 678999776666665543
Q ss_pred -Cccc---------CCCCCCCCCcHHHHHHHHHHHHHHHHHH
Q 025709 210 -RDYR---------KVPSKEQKHRALDDIRESIMELKYYKEN 241 (249)
Q Consensus 210 -~~~~---------~~l~~~~~HrAl~Da~aT~~ll~~~~~~ 241 (249)
.... ++++..++|||++||++|+++++++++.
T Consensus 159 ~~~~s~kL~~L~~~~Gi~~~~aHrAL~DA~aTa~l~~~l~~~ 200 (482)
T 2qxf_A 159 DGLPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTR 200 (482)
T ss_dssp TSSBCCCHHHHHHHTTCCCC---CTTHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 1111 3567778999999999999999998754
No 17
>1zbu_A ERI-1 homolog, 3'-5' exonuclease ERI1; hydrolase; HET: AMP; 3.00A {Homo sapiens}
Probab=99.93 E-value=3.7e-26 Score=209.64 Aligned_cols=167 Identities=17% Similarity=0.182 Sum_probs=127.4
Q ss_pred cCCcEEEEEEecCCCC----CCCCceEEEEEEEEcCc-EeeeeccceEEecCCCcccccchhhhhhhhhccCCcHHHHhc
Q 025709 67 YKMPLVWIDLEMTGLK----IEVDRILEIACIITDGK-LTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTKKVLHS 141 (249)
Q Consensus 67 ~~~~~V~lDlETTGL~----p~~d~IIEIgaVv~dg~-~~~~~~~~~~~I~p~~~~~~~~~~~~~~~h~~tGIt~~~l~~ 141 (249)
....||+||+||||++ +..++|||||||.+++. .. +.+.|+.+|+|... ..++++++ .+||||++++.+
T Consensus 126 ~~~~~vviD~ETTGl~~~~~~~~deIIEIgaV~vd~~~g~-i~~~f~~lVkP~~~--~~I~~~~t---~ihGIT~e~v~~ 199 (349)
T 1zbu_A 126 YYDYICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLE-IEDTFQQYVRPEIN--TQLSDFCI---SLTGITQDQVDR 199 (349)
T ss_dssp CCSEEEECCCEECCCTTCCTTCCCCEEECCEEEEETTTTE-EEEEECCBEECSSS--CSCCHHHH---HHHCCCHHHHHT
T ss_pred cCCeEEEEEEecCCCCCcCCCCCCeEEEEEEEEEECCCce-EeEEEEEEECCCCC--CCCCHHHH---HHhCCCHHHHhC
Confidence 3578999999999996 56799999999977642 22 23578999999862 12367777 455999999999
Q ss_pred CCCHHHHHHHHHHHHhcc-cCCCCcEEEEecHHHHHH-HHHHHHHhccCCCC---CceeehhHHHHHHHHHC--CC----
Q 025709 142 GLTEREAEKQVVEFVKKN-VGTYTPLLAGNSVYVDFM-FLKKYMPDLASLFS---HVLVDVSSIKALCMRWY--PR---- 210 (249)
Q Consensus 142 ~p~~~ea~~~~~~fl~~~-~~~~~~~lVghn~~FD~~-fL~~~~~~~~~~~~---~~~iD~~sl~~la~r~~--p~---- 210 (249)
+|++.+|+.+|.+|+++. .+.+..++||||+.||+. ||++++.+++..++ +.++|+..++ +.++ |.
T Consensus 200 ap~~~eVl~~f~~~l~~~~~~~~~~~lVaHNa~FD~~~fL~~~~~~~g~~~p~~~~~~iDt~~l~---~~~~~~~~~~~~ 276 (349)
T 1zbu_A 200 ADTFPQVLKKVIDLMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSY---GNFYKVPRSQTK 276 (349)
T ss_dssp SEEHHHHHHHHHHHHHHTTBTTTBCEEEEESSSHHHHTHHHHHHHHTTBCCCGGGSEEEEHHHHH---HHHHTCCGGGGS
T ss_pred CCCHHHHHHHHHHHHhcccccCCCcEEEEECcHhhHHHHHHHHHHHhCCCCccccchHHHHHHHH---HHHhcCCCCCCC
Confidence 999999999999999874 111124789999999999 99999988876544 4799996543 3332 22
Q ss_pred c----ccCCCCCC-CCCcHHHHHHHHHHHHHHHHHHh
Q 025709 211 D----YRKVPSKE-QKHRALDDIRESIMELKYYKENI 242 (249)
Q Consensus 211 ~----~~~~l~~~-~~HrAl~Da~aT~~ll~~~~~~~ 242 (249)
+ ..++++.. .+|||++||++|++++..+.+..
T Consensus 277 L~~l~~~~gi~~~g~~HrAl~DA~ata~ll~~ll~~~ 313 (349)
T 1zbu_A 277 LTIMLEKLGMDYDGRPHCGLDDSKNIARIAVRMLQDG 313 (349)
T ss_dssp HHHHHHHTTCCCCSCTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 1 12456655 48999999999999999887654
No 18
>4hec_A Putative uncharacterized protein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, unknown; 1.80A {Mycobacterium tuberculosis}
Probab=99.32 E-value=1e-11 Score=104.50 Aligned_cols=159 Identities=16% Similarity=0.146 Sum_probs=100.7
Q ss_pred ccCCcEEEEEEecCCCCCCCCceEEEEEEEEcCcEeeeeccceEEecCCCcccccchhhhhhhhhccCCcHHHHhcCCCH
Q 025709 66 EYKMPLVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTKKVLHSGLTE 145 (249)
Q Consensus 66 ~~~~~~V~lDlETTGL~p~~d~IIEIgaVv~dg~~~~~~~~~~~~I~p~~~~~~~~~~~~~~~h~~tGIt~~~l~~~p~~ 145 (249)
+..+.-+++|||+||. ....++|+||+|..||+. |+.++..... ....+|++.. -+.+|...-.....+.
T Consensus 19 p~~m~r~FlDTEFt~d-~~~~eLISIGlV~EdGrE------FYav~~d~d~--~~~~~wVr~~-Vlp~L~~~~~~~~~s~ 88 (190)
T 4hec_A 19 PGSMVRYFYDTEFIED-GHTIELISIGVVAEDGRE------YYAVSTEFDP--ERAGSWVRTH-VLPKLPPPASQLWRSR 88 (190)
T ss_dssp --CEEEEEEEEEEEEC-SSCEEEEEEEEEETTSCE------EEEEETTSCG--GGCCHHHHHH-TGGGSCCTTSTTEECH
T ss_pred CCceeEEEEeeeecCC-CCCCCEEEEEEEcCCCCE------EEEEecCCCh--hhCcHHHHhc-cccCCCCCcccccCCH
Confidence 3446678999999984 446799999999877752 4455443211 2336787753 2345543222233578
Q ss_pred HHHHHHHHHHHhcccCCCCcEEEEecHHHHHHHHHHHHHhcc---CCCCCceeehhHHHHHHHHHCCCcccCCCCCCCCC
Q 025709 146 REAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLA---SLFSHVLVDVSSIKALCMRWYPRDYRKVPSKEQKH 222 (249)
Q Consensus 146 ~ea~~~~~~fl~~~~~~~~~~lVghn~~FD~~fL~~~~~~~~---~~~~~~~iD~~sl~~la~r~~p~~~~~~l~~~~~H 222 (249)
.++..+|.+||+... ..++.|++|+..||..+|...+..++ ..++.-..|++.+.+.+. .|... .....+|
T Consensus 89 ~~i~~~L~~FL~~~~-~~~~eLwa~~~~yD~~~L~ql~g~m~~lP~~~p~~~~dlr~~~~~~g--~~~lp---~~~~~~H 162 (190)
T 4hec_A 89 QQIRLDLEEFLRIDG-TDSIELWAWVGAYDHVALCQLWGPMTALPPTVPRFTRELRQLWEDRG--CPRMP---PRPRDVH 162 (190)
T ss_dssp HHHHHHHHHHTTTTS-SCEEEEEESSCHHHHHHHHTTTSSGGGSCTTSCSSCEEHHHHHHHTT--CCCCC---C-----C
T ss_pred HHHHHHHHHHHHhcC-CCCCEEEEecccccHHHHHHHhcccccCCcccchhhHHHHHHHHHcC--CCCCC---CCCCCCc
Confidence 999999999997642 12346899999999999998764332 234444567765543321 22221 2356789
Q ss_pred cHHHHHHHHHHHHHHHHH
Q 025709 223 RALDDIRESIMELKYYKE 240 (249)
Q Consensus 223 rAl~Da~aT~~ll~~~~~ 240 (249)
+||.||++.+..++.+..
T Consensus 163 ~AL~DAR~n~~~~~~~~~ 180 (190)
T 4hec_A 163 DALVDARDQLRRFRLITS 180 (190)
T ss_dssp CHHHHHHHHHHHHHHHHC
T ss_pred CcHHHHHHHHHHHHHHhC
Confidence 999999999998887754
No 19
>2kfn_A Klenow fragment of DNA polymerase I; complex (polymerase/DNA), exonuclease, transferase, transferase/DNA complex; HET: US1; 2.03A {Escherichia coli} SCOP: c.55.3.5 e.8.1.1 PDB: 1d9f_A* 1d9d_A* 1krp_A* 1ksp_A* 1qsl_A* 1kfs_A* 2kfz_A* 2kzm_A* 2kzz_A* 1dpi_A* 1kfd_A* 1kln_A* 1d8y_A*
Probab=98.88 E-value=3.4e-08 Score=96.26 Aligned_cols=136 Identities=13% Similarity=0.088 Sum_probs=94.0
Q ss_pred CcEEEEEEecCCCCCCCCceEEEEEEEEcCcEeeeeccceEEecCCCcccccchhhhhhhhhccCCcHHHHhcCCCHHHH
Q 025709 69 MPLVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTKKVLHSGLTEREA 148 (249)
Q Consensus 69 ~~~V~lDlETTGL~p~~d~IIEIgaVv~dg~~~~~~~~~~~~I~p~~~~~~~~~~~~~~~h~~tGIt~~~l~~~p~~~ea 148 (249)
..+|+||+||||+++..++|++||++..+++. ++|++... ++. +.+.+++.++
T Consensus 26 ~~~va~DtEttgl~~~~~~iv~I~~~~~~g~~--------~yip~~~~----------------~~~---~~~~l~~~~v 78 (605)
T 2kfn_A 26 APVFAFDTETDSLDNISANLVGLSFAIEPGVA--------AYIPVAHD----------------YLD---APDQISRERA 78 (605)
T ss_dssp SSSEEEEEEESCSCTTTCCEEEEEEEEETTEE--------EEEECCCC----------------STT---CCCCCCHHHH
T ss_pred CCeEEEEEecCCCCcccCceEEEEEEEcCCcE--------EEEecccc----------------ccc---cccccCHHHH
Confidence 36799999999999988999999988544432 23422110 111 1234567889
Q ss_pred HHHHHHHHhcccCCCCcEEEEecHHHHHHHHHHHHHhccCCCCCceeehhHHHHHHHHHCCCcccC----------CCCC
Q 025709 149 EKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMRWYPRDYRK----------VPSK 218 (249)
Q Consensus 149 ~~~~~~fl~~~~~~~~~~lVghn~~FD~~fL~~~~~~~~~~~~~~~iD~~sl~~la~r~~p~~~~~----------~l~~ 218 (249)
+..|..|+.+. ..++||||+.||+.+|.+ +|..+...++||. -+++.+.|....+ +...
T Consensus 79 l~~L~~~L~d~----~i~kV~hnak~D~~~L~~----~Gi~l~~~~~DT~---laayLL~p~~~~~~L~~La~~~Lg~~~ 147 (605)
T 2kfn_A 79 LELLKPLLEDE----KALKVGQNLKYDRGILAN----YGIELRGIAFDTM---LESYILNSVAGRHDMDSLAERWLKHKT 147 (605)
T ss_dssp HHHHHHHHTCT----TSCEEESSHHHHHHHHHT----TTCCCCCEEEEHH---HHHHHHCTTSSCCSHHHHHHHHSCCCC
T ss_pred HHHHHHHHcCC----CCeEEEECcHHHHHHHHH----CCCCCCCccccHH---HHHHHhCCCCCCCCHHHHHHHhcCCCc
Confidence 99999999872 136899999999999986 3656666789983 4566677743221 1110
Q ss_pred ---------C-------------CCCcHHHHHHHHHHHHHHHHHHh
Q 025709 219 ---------E-------------QKHRALDDIRESIMELKYYKENI 242 (249)
Q Consensus 219 ---------~-------------~~HrAl~Da~aT~~ll~~~~~~~ 242 (249)
+ ..|.|..||.++.+++..+.+.+
T Consensus 148 i~~~~~~gKg~~~~~~~~~~le~~~~yAa~Da~~~~~L~~~L~~~L 193 (605)
T 2kfn_A 148 ITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPDL 193 (605)
T ss_dssp CCHHHHHCSSTTCCCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccHHHHhCCCcccCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 12568999999999999887755
No 20
>1x9m_A DNA polymerase; DNA ploymerase, N-2-acetylaminofluorene, replication block, mutagenesis, transferase/electron transport/DNA complex; HET: DNA 2DT 8FG; 2.10A {Enterobacteria phage T7} SCOP: c.55.3.5 e.8.1.1 PDB: 1skr_A* 1skw_A* 1sl0_A* 1sks_A* 1sl2_A* 1t7p_A* 1t8e_A* 1tk0_A* 1tk5_A* 1tk8_A* 1tkd_A* 1sl1_A* 1x9s_A* 1x9w_A* 1zyq_A* 2ajq_A*
Probab=98.52 E-value=8e-07 Score=87.96 Aligned_cols=97 Identities=13% Similarity=-0.029 Sum_probs=61.4
Q ss_pred EEEEEEecCCCCCCCCceEEEEEEEEcCcEeeeeccceEEecCCCcccccchhhhhhhhhccCCcHHHHhcCCCHHHHHH
Q 025709 71 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTKKVLHSGLTEREAEK 150 (249)
Q Consensus 71 ~V~lDlETTGL~p~~d~IIEIgaVv~dg~~~~~~~~~~~~I~p~~~~~~~~~~~~~~~h~~tGIt~~~l~~~p~~~ea~~ 150 (249)
+|+||+|||||++..++|..|.+. +.... + ...+.|. .+.+.+.
T Consensus 1 ~vv~D~ETtGl~~~~d~i~~iqi~--~~~~~---~--~~~~~p~-----------------------------~i~~~l~ 44 (698)
T 1x9m_A 1 MIVSDIEANALLESVTKFHCGVIY--DYSTA---E--YVSYRPS-----------------------------DFGAYLD 44 (698)
T ss_dssp CEEEEEEESSCGGGCCCEEEEEEE--ETTTT---E--EEEECGG-----------------------------GHHHHHH
T ss_pred CEEEEcCCCCcCCCCCEEEEEEEE--ecCCC---c--EEEEChH-----------------------------HHHHHHH
Confidence 589999999999988876444333 32110 0 1223221 1233456
Q ss_pred HHHHHHhcccCCCCcEEEEecH-HHHHHHHHHHHHh---ccCCCC-CceeehhHHHHHHHHHCCCc
Q 025709 151 QVVEFVKKNVGTYTPLLAGNSV-YVDFMFLKKYMPD---LASLFS-HVLVDVSSIKALCMRWYPRD 211 (249)
Q Consensus 151 ~~~~fl~~~~~~~~~~lVghn~-~FD~~fL~~~~~~---~~~~~~-~~~iD~~sl~~la~r~~p~~ 211 (249)
.|..|+.. ..++||||+ .||+.+|.+++.+ .|..++ ..++|| +-+++.+.|..
T Consensus 45 ~L~~~l~~-----~~~kV~HNa~kfD~~~L~~~~~~~~~~Gi~l~~~~~~DT---mlaayLL~p~~ 102 (698)
T 1x9m_A 45 ALEAEVAR-----GGLIVFHNGHKYDVPALTKLAKLQLNREFHLPRENCIDT---LVLSRLIHSNL 102 (698)
T ss_dssp HHHHHHHT-----TCCEEESSTTTTHHHHHHHHHHHHHCCCCCCCGGGEEEH---HHHHHHHTTTS
T ss_pred HHHHHHhc-----CCeEEEcCChHHHHHHHHHhhhhcccCCccCCCCcchhH---HHHHHHhCCCC
Confidence 66777752 146899999 9999999988643 254556 679999 44567777743
No 21
>4gmj_B CCR4-NOT transcription complex subunit 7; mRNA decay, deadenylase, RNA bindin; HET: GOL; 2.70A {Homo sapiens}
Probab=98.05 E-value=9.1e-05 Score=65.75 Aligned_cols=172 Identities=16% Similarity=0.127 Sum_probs=97.2
Q ss_pred CCcEEEEEEecCCCCCCC---------------------CceEEEEEEEEcCcEeee----eccceEEecCCCcccccch
Q 025709 68 KMPLVWIDLEMTGLKIEV---------------------DRILEIACIITDGKLTKS----VEGPDLVIHQTKECLDSMG 122 (249)
Q Consensus 68 ~~~~V~lDlETTGL~p~~---------------------d~IIEIgaVv~dg~~~~~----~~~~~~~I~p~~~~~~~~~ 122 (249)
.-+||++|+|.+|+.... -.|||+|..+.+.+...- .-.|.+.+.+...... +
T Consensus 33 ~~~fVAiDtEFpGvv~rp~~~~~~t~d~~Y~~lr~nvd~l~iIQlGLt~f~~~g~~p~~~~~wqFNF~f~~~~d~~~--~ 110 (285)
T 4gmj_B 33 KYNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPPGTSTWQFNFKFNLTEDMYA--Q 110 (285)
T ss_dssp HCCEEEEEEECCCCCCCCTTCCTTSTTHHHHHHHHHHTTSCCCEEEEEEECTTSCCCSSCCEEEEEBCCCTTTSCCC--H
T ss_pred cCCEEEEEEEecCccCCCCCccCCCHHHHHHHHHHHHHhhcceeEEEEeeccCCCcCCCeeEEEEEEEecccccccc--H
Confidence 467999999999985321 159999988776443210 1123444444443211 1
Q ss_pred hhhhhhhhccCCcH-HHHhcCCCHHHHHHHHHHHHhcccCCCCcEEEEecHHHHHHHHHHHHHh-------------ccC
Q 025709 123 EWCQNHHEASGLTK-KVLHSGLTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPD-------------LAS 188 (249)
Q Consensus 123 ~~~~~~h~~tGIt~-~~l~~~p~~~ea~~~~~~fl~~~~~~~~~~lVghn~~FD~~fL~~~~~~-------------~~~ 188 (249)
+.+. .-.-+|+.= .....+.++.+..+.+.... .+-.....+|.++..+|+.||-+.+-. +..
T Consensus 111 ~SI~-fL~~~G~DF~k~~~~GI~~~~f~ell~~sg--lvl~~~v~WvtfH~~yDf~yL~k~lt~~~LP~~~~eF~~~l~~ 187 (285)
T 4gmj_B 111 DSIE-LLTTSGIQFKKHEEEGIETQYFAELLMTSG--VVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEILRL 187 (285)
T ss_dssp HHHH-HHHHHTCCHHHHHHHCBCHHHHHHHHHTSS--SSSCTTCEEEESSCHHHHHHHHHHHHTSCCCSSHHHHHHHHHH
T ss_pred HHHH-HHHHcCCCHHHHHHcCCCHHHHHHHHHHhH--HHhcCCCceEEecchhhHHHHHHHHhCCCCCCCHHHHHHHHHH
Confidence 1111 112347753 44566777765444332211 111122456666666899999887521 122
Q ss_pred CCCCceeehhHHHHHHHHHCCCccc-----CCCCCCCCCcHHHHHHHHHHHHHHHHHHhcCc
Q 025709 189 LFSHVLVDVSSIKALCMRWYPRDYR-----KVPSKEQKHRALDDIRESIMELKYYKENIFKT 245 (249)
Q Consensus 189 ~~~~~~iD~~sl~~la~r~~p~~~~-----~~l~~~~~HrAl~Da~aT~~ll~~~~~~~~~~ 245 (249)
+|| .+.|+..|.+.+..+...+.. ...+.+..|.|-.|+..|+.++..+++.+|..
T Consensus 188 ~FP-~vYD~K~l~~~~~~l~ggL~~lA~~L~v~r~g~~HqAGsDSllT~~~F~kl~~~~f~~ 248 (285)
T 4gmj_B 188 FFP-VIYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMREMFFED 248 (285)
T ss_dssp HCS-CEEEHHHHGGGSTTCCSCHHHHHHHTTCCCCSCTTSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HCc-hhhhHHHHHHhccccCChHHHHHHhCCCCCCCCCCcchhHHHHHHHHHHHHHHHHhcC
Confidence 344 377775443322222111110 12356778999999999999999999999864
No 22
>1qht_A Protein (DNA polymerase); archaea, hyperthermostable, family B polymer alpha family polymerase, transferase; 2.10A {Thermococcus SP} SCOP: c.55.3.5 e.8.1.1 PDB: 1tgo_A 2xhb_A* 2vwj_A* 2vwk_A* 1wns_A* 1wn7_A 1qqc_A* 4ahc_A* 4ail_C* 3a2f_A* 2jgu_A* 1d5a_A
Probab=98.01 E-value=2.1e-05 Score=78.71 Aligned_cols=91 Identities=16% Similarity=0.145 Sum_probs=64.6
Q ss_pred cCCcEEEEEEecCC---CCCCCCceEEEEEEEEcCcEeeeeccceEEecCCCcccccchhhhhhhhhccCCcHHHHhcCC
Q 025709 67 YKMPLVWIDLEMTG---LKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTKKVLHSGL 143 (249)
Q Consensus 67 ~~~~~V~lDlETTG---L~p~~d~IIEIgaVv~dg~~~~~~~~~~~~I~p~~~~~~~~~~~~~~~h~~tGIt~~~l~~~p 143 (249)
.+..+++||+||+| ++|..|+|+.||++..++.... ...+ + ....+...+
T Consensus 133 ~~l~ilsfDIEt~~~~~p~~~~d~Ii~Is~~~~~~~~~~-------t~~~---i-----------------~~~~v~~~~ 185 (775)
T 1qht_A 133 EELTMLAFAIATLYHEGEEFGTGPILMISYADGSEARVI-------TWKK---I-----------------DLPYVDVVS 185 (775)
T ss_dssp CCCCEEEEEEEECCCTTCCTTCSCEEEEEEECSSCEEEE-------ESSC---C-----------------CCSSEEECS
T ss_pred CCcEEEEEEEEEcCCCCCCCCCCcEEEEEEEecCCCeeE-------eecc---c-----------------cccceEEcC
Confidence 46799999999999 7888999999998643322110 1111 0 000122346
Q ss_pred CHHHHHHHHHHHHhcccCCCCcEEEEecH-HHHHHHHHHHHHhcc
Q 025709 144 TEREAEKQVVEFVKKNVGTYTPLLAGNSV-YVDFMFLKKYMPDLA 187 (249)
Q Consensus 144 ~~~ea~~~~~~fl~~~~~~~~~~lVghn~-~FD~~fL~~~~~~~~ 187 (249)
++.+.+..|.+++..+- +-+|||||+ .||+++|...+..++
T Consensus 186 ~E~~LL~~f~~~i~~~d---PDiivGyN~~~FDlpyL~~Ra~~~g 227 (775)
T 1qht_A 186 TEKEMIKRFLRVVREKD---PDVLITYNGDNFDFAYLKKRCEELG 227 (775)
T ss_dssp CHHHHHHHHHHHHHHHC---CSEEEESSTTTTHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHhcC---CCEEEEeCCCCccHHHHHHHHHHcC
Confidence 78899999999999752 347999999 999999998876554
No 23
>1s5j_A DNA polymerase I; replication, disulfide bonds, transferase; HET: DNA; 2.40A {Sulfolobus solfataricus} SCOP: c.55.3.5 e.8.1.1
Probab=97.69 E-value=6.9e-05 Score=75.63 Aligned_cols=101 Identities=20% Similarity=0.124 Sum_probs=64.3
Q ss_pred ccCCcEEEEEEec-CCC-----CCC--CCceEEEEEEEEcCcEeeeeccceEEecCCCcccccchhhhhhhhhccCCcHH
Q 025709 66 EYKMPLVWIDLEM-TGL-----KIE--VDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTKK 137 (249)
Q Consensus 66 ~~~~~~V~lDlET-TGL-----~p~--~d~IIEIgaVv~dg~~~~~~~~~~~~I~p~~~~~~~~~~~~~~~h~~tGIt~~ 137 (249)
+.+-++++||+|| ||. +|. .|+||+||++..+|... .+.++++....+ .. .+.| .
T Consensus 187 ~p~l~ilsfDIEt~s~~~g~fP~~~~~~d~Ii~Is~~~~~g~~~------~~~~~~~~~~~~-~~-------~i~~---~ 249 (847)
T 1s5j_A 187 IPKIKRVAIDIEVYTPVKGRIPDSQKAEFPIISIALAGSDGLKK------VLVLNRNDVNEG-SV-------KLDG---I 249 (847)
T ss_dssp CCCCCEEEEEEEECCSSSSCCCCTTTCCSCEEEEEEEETTSCEE------EEEECSSCCCCC-CE-------EETT---E
T ss_pred CCCceEEEEEEEeCcCCCCCCCCccccCCcEEEEEEEccCCCcE------EEEEeCCccccc-cc-------CCCC---C
Confidence 4578999999999 753 332 38999999963333322 133443221000 00 0001 1
Q ss_pred HHhcCCCHHHHHHHHHHHHhcccCCCCcEEEEecH-HHHHHHHHHHHHhccC
Q 025709 138 VLHSGLTEREAEKQVVEFVKKNVGTYTPLLAGNSV-YVDFMFLKKYMPDLAS 188 (249)
Q Consensus 138 ~l~~~p~~~ea~~~~~~fl~~~~~~~~~~lVghn~-~FD~~fL~~~~~~~~~ 188 (249)
.+..-+++.+.+..|.+|+.++ .+++|||. .||+++|...+..+|.
T Consensus 250 ~v~~~~~E~~LL~~f~~~i~~~-----diivgyN~~~FDlPyL~~Ra~~lgi 296 (847)
T 1s5j_A 250 SVERFNTEYELLGRFFDILLEY-----PIVLTFNGDDFDLPYIYFRALKLGY 296 (847)
T ss_dssp EEEEESSHHHHHHHHHHHHTTC-----SEEEESSTTTTHHHHHHHHHHTTTC
T ss_pred eEEEeCCHHHHHHHHHHHhccC-----CEEEEeCCCCchHHHHHHHHHHcCC
Confidence 1222357899999999999864 47999999 8999999988766553
No 24
>2d5r_A CCR4-NOT transcription complex subunit 7; poly(A) deadenylase, antiproliferative protein, transcription; 2.50A {Homo sapiens} SCOP: c.55.3.9
Probab=97.60 E-value=0.00086 Score=58.42 Aligned_cols=172 Identities=17% Similarity=0.136 Sum_probs=99.5
Q ss_pred CCcEEEEEEecCCCCCC---------------------CCceEEEEEEEEcCcEee----eeccceEEecCCCcccccch
Q 025709 68 KMPLVWIDLEMTGLKIE---------------------VDRILEIACIITDGKLTK----SVEGPDLVIHQTKECLDSMG 122 (249)
Q Consensus 68 ~~~~V~lDlETTGL~p~---------------------~d~IIEIgaVv~dg~~~~----~~~~~~~~I~p~~~~~~~~~ 122 (249)
.-+||++|+|-+|+... .-.|||+|.-+.+.+... ..-.|.+.......... +
T Consensus 23 ~~~fvAmDtEFpGvv~rp~g~f~~~~~~~Y~~lr~nVd~l~iIQlGlt~~~~~g~~p~~~~~wqFNF~F~~~~d~~~--~ 100 (252)
T 2d5r_A 23 KYNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPPGTSTWQFNFKFNLTEDMYA--Q 100 (252)
T ss_dssp HCCEEEEEEECCCCCCCCCSCCSSHHHHHHHHHHHHHTTCCCCEEEEEEECTTSCCCSSCCEEEEEBCCCTTTSCCC--H
T ss_pred hCCEEEEEeeecceecccCCCCCCCHHHHHHHHHHhhhhcceeEEEEEEEccCCCCCCCceeEEEEEEECCcccccC--H
Confidence 46899999999999632 137999998876643321 01123333333222111 1
Q ss_pred hhhhhhhhccCCcH-HHHhcCCCHHHHHHHHHHHHhcccCCCCcEEEEecHHHHHHHHHHHHH-------------hccC
Q 025709 123 EWCQNHHEASGLTK-KVLHSGLTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMP-------------DLAS 188 (249)
Q Consensus 123 ~~~~~~h~~tGIt~-~~l~~~p~~~ea~~~~~~fl~~~~~~~~~~lVghn~~FD~~fL~~~~~-------------~~~~ 188 (249)
+++. .-.-+|+.= .....|.+..+..+.++. .+.+-.....+|.++..+|+.+|-+.+- .+..
T Consensus 101 ~Si~-fL~~~G~DF~k~~~~GI~~~~F~ell~~--sglvl~~~v~Witfhg~yDf~yL~k~L~~~~LP~~~~~F~~~l~~ 177 (252)
T 2d5r_A 101 DSIE-LLTTSGIQFKKHEEEGIETQYFAELLMT--SGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEILRL 177 (252)
T ss_dssp HHHH-HHHHHTCCHHHHHHHCBCHHHHHHHHHT--TTSSSSSSCEEEESSCHHHHHHHHHHHHTSCCCSSHHHHHHHHHH
T ss_pred HHHH-HHHHcCCChhHHHhcCCCHHHHHHHHHh--cCcccCCCceEEEecCcchHHHHHHHhcCCCCCCCHHHHHHHHHH
Confidence 1111 112337753 445677777653333322 1111112357889999999999987652 1223
Q ss_pred CCCCceeehhHHHHHHHHHCCCccc-----CCCCCCCCCcHHHHHHHHHHHHHHHHHHhcCc
Q 025709 189 LFSHVLVDVSSIKALCMRWYPRDYR-----KVPSKEQKHRALDDIRESIMELKYYKENIFKT 245 (249)
Q Consensus 189 ~~~~~~iD~~sl~~la~r~~p~~~~-----~~l~~~~~HrAl~Da~aT~~ll~~~~~~~~~~ 245 (249)
+|| .+.|+.-+.+.++.+...+.. ...+.+..|.|-.|+..|..++-.+++.+|..
T Consensus 178 ~FP-~iyD~K~l~~~~~~l~~gL~~la~~L~v~r~g~~HqAGsDsllT~~~F~km~~~~f~~ 238 (252)
T 2d5r_A 178 FFP-VIYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMREMFFED 238 (252)
T ss_dssp HCS-CEEEHHHHGGGCTTCCSSHHHHHHHHTCCCCSSTTSHHHHHHHHHHHHHHHHHHTSCS
T ss_pred HCc-chhhHHHHHHHhcccCCCHHHHHHHcCCCccCcccchhhhHHHHHHHHHHHHHHhcCC
Confidence 555 678885444333222222110 12356788999999999999999999999975
No 25
>3iay_A DNA polymerase delta catalytic subunit; protein-DNA complex, DNA replication, DNA-BI DNA-directed DNA polymerase, exonuclease, hydrolase; HET: DNA DOC DCP; 2.00A {Saccharomyces cerevisiae}
Probab=97.48 E-value=0.0002 Score=72.90 Aligned_cols=99 Identities=19% Similarity=0.301 Sum_probs=63.8
Q ss_pred cCCcEEEEEEecCC---C--CCCCCceEEEEEEE-EcCcEeeeeccceEEecCCCcccccchhhhhhhhhccCCcHHHHh
Q 025709 67 YKMPLVWIDLEMTG---L--KIEVDRILEIACII-TDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTKKVLH 140 (249)
Q Consensus 67 ~~~~~V~lDlETTG---L--~p~~d~IIEIgaVv-~dg~~~~~~~~~~~~I~p~~~~~~~~~~~~~~~h~~tGIt~~~l~ 140 (249)
.+-+++.||+||++ + +|..|+||+|++++ .+|....... -.+.+.+..+. .| ..+.
T Consensus 247 PplrilSfDIEt~~~~g~fP~~~~D~Ii~IS~~v~~~g~~~~~~r-~~f~l~~~~~~--------------~~---~~V~ 308 (919)
T 3iay_A 247 APLRIMSFDIECAGRIGVFPEPEYDPVIQIANVVSIAGAKKPFIR-NVFTLNTCSPI--------------TG---SMIF 308 (919)
T ss_dssp CCCEEEEEEEEECCCTTSCCCTTTCCEEEEEEEEEETTCSSCSEE-EEEEESCCCCB--------------TT---BEEE
T ss_pred CCceEEEEEEEECCCCCCCCCCCCCcEEEEEEEEecCCCccccee-EEEEecCCCCC--------------CC---CeEE
Confidence 46789999999985 2 45689999999885 3443221100 00112221111 01 1123
Q ss_pred cCCCHHHHHHHHHHHHhcccCCCCcEEEEecH-HHHHHHHHHHHHhc
Q 025709 141 SGLTEREAEKQVVEFVKKNVGTYTPLLAGNSV-YVDFMFLKKYMPDL 186 (249)
Q Consensus 141 ~~p~~~ea~~~~~~fl~~~~~~~~~~lVghn~-~FD~~fL~~~~~~~ 186 (249)
.-+++.+.+..|.+|+..+- +.+|+|||+ .||+++|.+-+..+
T Consensus 309 ~~~sE~eLL~~F~~~i~~~D---PDIIvGyNi~~FDlpyL~~Ra~~l 352 (919)
T 3iay_A 309 SHATEEEMLSNWRNFIIKVD---PDVIIGYNTTNFDIPYLLNRAKAL 352 (919)
T ss_dssp EESSHHHHHHHHHHHHHHHC---CSEEEESSTTTTHHHHHHHHHHHT
T ss_pred ECCCHHHHHHHHHHHHHHhC---CCEEEecCCccCCHHHHHHHHHHc
Confidence 34578999999999998753 357899999 89999998765433
No 26
>2p51_A SPCC18.06C protein; DEDD nuclease fold, hydrolase, gene regulation; 1.40A {Schizosaccharomyces pombe} PDB: 3g0z_A 3g10_A
Probab=97.46 E-value=0.0016 Score=58.72 Aligned_cols=173 Identities=16% Similarity=0.110 Sum_probs=99.6
Q ss_pred cCCcEEEEEEecCCCCCCC---------------------CceEEEEEEEEcCcEee----eeccceEEecCCCcccccc
Q 025709 67 YKMPLVWIDLEMTGLKIEV---------------------DRILEIACIITDGKLTK----SVEGPDLVIHQTKECLDSM 121 (249)
Q Consensus 67 ~~~~~V~lDlETTGL~p~~---------------------d~IIEIgaVv~dg~~~~----~~~~~~~~I~p~~~~~~~~ 121 (249)
..-+||++|+|-+|+.... -.|||||.-+.+.+... ..-.|.+..........
T Consensus 43 ~~~~fVAmDtEFpGvv~rp~g~f~~~~e~~Yq~lR~NVd~l~iIQlGLt~fd~~G~~p~~~~twqFNF~F~~~~d~~~-- 120 (333)
T 2p51_A 43 ERYPVVSMDTEFPGVVARPLGVFKSSDDYHYQTLRANVDSLKIIQIGLALSDEEGNAPVEACTWQFNFTFNLQDDMYA-- 120 (333)
T ss_dssp TTSCEEEEEEECCCCCCCCCSCCSSSHHHHHHHHHHHHHHSCCCEEEEEEECTTSCCCTTCSEEEEEBCCCTTTSCCC--
T ss_pred hhCCEEEEeeeccccccccccccCCCHHHHHHHHHHhhhhccceEEEEEEEccCCCCCCCceeEEEEEEECCcccccC--
Confidence 3579999999999997321 26899998876643321 11123333333222111
Q ss_pred hhhhhhhhhccCCcH-HHHhcCCCHHHHHHHHHHHHhcccCCCCcEEEEecHHHHHHHHHHHHH-------------hcc
Q 025709 122 GEWCQNHHEASGLTK-KVLHSGLTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMP-------------DLA 187 (249)
Q Consensus 122 ~~~~~~~h~~tGIt~-~~l~~~p~~~ea~~~~~~fl~~~~~~~~~~lVghn~~FD~~fL~~~~~-------------~~~ 187 (249)
.+.+. .-.-+|+.= .....|.+..+..+.++. .+.+-.....+|.++..+|+.||-+.+- .+.
T Consensus 121 ~~SI~-fL~~~G~DF~k~~~~GI~~~~F~elL~~--SGLvl~~~V~Witfhg~YDfgyLlK~Lt~~~LP~~~~eF~~~l~ 197 (333)
T 2p51_A 121 PESIE-LLTKSGIDFKKHQEVGIEPADFAELLIG--SGLVLQEEVTWITFHSGYDFAYLLKAMTQIPLPAEYEEFYKILC 197 (333)
T ss_dssp HHHHH-HHHHTTCCHHHHHHHCBCHHHHHHHHHT--TTSSSCTTCEEEESSCHHHHHHHHHHHHCSCCCSSHHHHHHHHH
T ss_pred HHHHH-HHHHcCCChhHHHHcCCCHHHHHHHHHh--cCcccCCCceEEEeccchhHHHHHHHhcCCCCCCCHHHHHHHHH
Confidence 11111 112348853 445678777654433332 1111112356888889999999987652 112
Q ss_pred CCCCCceeehhHHHHHHHHHCCCccc-----CCCCCCCCCcHHHHHHHHHHHHHHHHHHhcCc
Q 025709 188 SLFSHVLVDVSSIKALCMRWYPRDYR-----KVPSKEQKHRALDDIRESIMELKYYKENIFKT 245 (249)
Q Consensus 188 ~~~~~~~iD~~sl~~la~r~~p~~~~-----~~l~~~~~HrAl~Da~aT~~ll~~~~~~~~~~ 245 (249)
.+|| .+.|+..|.+.+..+...+.. ...+.+..|.|-.|+..|..++..+++.+|..
T Consensus 198 ~~FP-~iYD~K~l~~~~~~l~ggL~~lA~~L~v~Rig~~HqAGsDSlLT~~~F~kl~~~~f~~ 259 (333)
T 2p51_A 198 IYFP-KNYDIKYIMKSVLNNSKGLQDIADDLQIHRIGPQHQAGSDALLTARIFFEIRSRYFDG 259 (333)
T ss_dssp HHSS-SEEEHHHHHTTTTCCCCCHHHHHHHTTCCCCSCTTSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHCc-chhhHHHHHHHhccccCCHHHHHHHcCCCccCcchhhhhHHHHHHHHHHHHHHHhcCC
Confidence 3454 577885443322211111110 12356788999999999999999999999864
No 27
>1noy_A Protein (DNA polymerase (E.C.2.7.7.7)); exonuclease, DNA-binding, complex (nucleotidyltransferase/DNA); HET: DNA; 2.20A {Enterobacteria phage T4} SCOP: c.55.3.5 PDB: 1noz_A*
Probab=97.35 E-value=0.00069 Score=62.27 Aligned_cols=110 Identities=10% Similarity=0.057 Sum_probs=63.5
Q ss_pred ccCCcEEEEEEecCC---CCCC--CCceEEEEEEEEcCcEeeeeccceEEecCCCcccccchhhhhh----hhhc--cCC
Q 025709 66 EYKMPLVWIDLEMTG---LKIE--VDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQN----HHEA--SGL 134 (249)
Q Consensus 66 ~~~~~~V~lDlETTG---L~p~--~d~IIEIgaVv~dg~~~~~~~~~~~~I~p~~~~~~~~~~~~~~----~h~~--tGI 134 (249)
+.+-.+++||+||+| .+|. .++|+.|+++...+..... | ++++.+.... .+|... .+.. +.-
T Consensus 103 ~p~l~vlsfDIEt~~~~fP~~~~~~d~Ii~Is~~~~~~~~~~~---~-~l~~~~~~~~---~~~~~~~~~~~~~f~~~~~ 175 (388)
T 1noy_A 103 RKFVRVANCDIEVTGDKFPDPMKAEYEIDAITHYDSIDDRFYV---F-DLLNSMYGSV---SKWDAKLAAKLDCEGGDEV 175 (388)
T ss_dssp GGGCCEEEEEEEECCSSCCCTTTCCSCEEEEEEEETTTTEEEE---E-EECCCSSCCC---CCCCHHHHHSCGGGTCCCC
T ss_pred CCCeEEEEEEEEeCCCCCCCCCCCCCeEEEEEEEEecCCeEEE---E-EEeeccCCCC---Ccccccccccccccccccc
Confidence 457889999999998 1233 4699999997544332111 1 1233221100 011000 0000 000
Q ss_pred cHH---H--HhcCCCHHHHHHHHHHHHhcccCCCCcEEEEecH-HHHHHHHHHHHHh
Q 025709 135 TKK---V--LHSGLTEREAEKQVVEFVKKNVGTYTPLLAGNSV-YVDFMFLKKYMPD 185 (249)
Q Consensus 135 t~~---~--l~~~p~~~ea~~~~~~fl~~~~~~~~~~lVghn~-~FD~~fL~~~~~~ 185 (249)
.+. . +....++.+.+..|.+++...- +-+++|||+ .||+++|.+.+..
T Consensus 176 ~~~~~~~v~v~~~~~E~~LL~~f~~~i~~~d---PDii~GyN~~~FDlpyL~~Ra~~ 229 (388)
T 1noy_A 176 PQEILDRVIYMPFDNERDMLMEYINLWEQKR---PAIFTGWNIEGFDVPYIMNRVKM 229 (388)
T ss_dssp CHHHHTTEEEEEESCHHHHHHHHHHHHHHSC---CSEEECSSTTTTHHHHHHHHHHH
T ss_pred ccccCCCeEEEEcCCHHHHHHHHHHHHHHhC---CcEEEecCCCCccHHHHHHHHHH
Confidence 010 0 1234678999999999998752 358999999 9999999876544
No 28
>4dfk_A DNA polymerase I, thermostable; DNA polymerase, transferase-DNA complex; HET: DNA DOC 0L5; 1.65A {Thermus aquaticus} PDB: 1jxe_A* 3ktq_A* 3lwl_A* 3lwm_A* 3m8s_A* 3m8r_A* 3oju_A* 3rr7_A* 3rr8_A* 3rrg_A* 3ojs_A* 3rtv_A* 3sv3_A* 3sv4_A* 3syz_A* 3sz2_A* 3t3f_A* 4df4_A* 4df8_A* 4dfj_A* ...
Probab=97.13 E-value=0.00066 Score=65.25 Aligned_cols=116 Identities=12% Similarity=-0.003 Sum_probs=78.9
Q ss_pred cccCCcEEEEEEecCCCCCCCCceEEEEEEEEcCcEeeeeccceEEecCCCcccccchhhhhhhhhccCCcHHHHhcCCC
Q 025709 65 FEYKMPLVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTKKVLHSGLT 144 (249)
Q Consensus 65 ~~~~~~~V~lDlETTGL~p~~d~IIEIgaVv~dg~~~~~~~~~~~~I~p~~~~~~~~~~~~~~~h~~tGIt~~~l~~~p~ 144 (249)
++.+-+++++|+|+.|+++...+++-|+.- .+++. + ++ .
T Consensus 6 ~~~~p~~valDtE~~~~~~~~a~Lvgi~la-~~~~a------~--~i-----------------------~--------- 44 (540)
T 4dfk_A 6 PWPPPEGAFVGFVLSRKEPMWADLLALAAA-RGGRV------H--RA-----------------------P--------- 44 (540)
T ss_dssp CSCCCTTCEEEEEESSSCTTTCCEEEEEEE-ETTEE------E--EC-----------------------S---------
T ss_pred CCCCCCceEEEEEecCCccCcccEEEEEEE-cCCEE------E--Ee-----------------------h---------
Confidence 344557799999999999988887655543 22211 0 11 0
Q ss_pred HHHHHHHHHHHHhcccCCCCcEEEEecHHHHHHHHHHHHHhccCCCCCceeehhHHHHHHHHHCCCcccCCC-------C
Q 025709 145 EREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMRWYPRDYRKVP-------S 217 (249)
Q Consensus 145 ~~ea~~~~~~fl~~~~~~~~~~lVghn~~FD~~fL~~~~~~~~~~~~~~~iD~~sl~~la~r~~p~~~~~~l-------~ 217 (249)
+++..|..|+++ ...||||+.||+. ++|..+. ..+|| +-+++.+.|. .+++ .
T Consensus 45 --~~l~~l~~~l~d------~~kV~hn~K~Dl~-------~~Gi~~~-~~fDT---~laAyLL~p~--~~~L~~La~~yl 103 (540)
T 4dfk_A 45 --EPYKALRDLKEA------RGLLAKDLSVLAL-------REGLGLP-PGDDP---MLLAYLLDPS--NTTPEGVARRYG 103 (540)
T ss_dssp --SHHHHHTTCSSB------CSTTHHHHHHHHH-------HTTCCCC-BCCCH---HHHHHHHCTT--CCCHHHHHHHHT
T ss_pred --hhHHHHHHHHcC------CCEEEeccHHHHH-------HcCCCCC-cceeH---HHHHHHhCCC--CCCHHHHHHHHh
Confidence 244566777766 2468999999998 3566566 78898 4467777886 3321 0
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHHHh
Q 025709 218 KEQKHRALDDIRESIMELKYYKENI 242 (249)
Q Consensus 218 ~~~~HrAl~Da~aT~~ll~~~~~~~ 242 (249)
..-.|+|..||.++..++..+.+.+
T Consensus 104 ~~~gk~a~~DA~~t~~L~~~L~~~L 128 (540)
T 4dfk_A 104 GEWTEEAGERAALSERLFANLWGRL 128 (540)
T ss_dssp SCCCSCHHHHHHHHHHHHHHHHHHT
T ss_pred hhhccchHHHHHHHHHHHHHHHHHH
Confidence 1135789999999999999888766
No 29
>2gv9_A DNA polymerase; polymerase alpha fold, transferase; HET: DNA; 2.68A {Human herpesvirus 1} PDB: 1dml_B*
Probab=96.98 E-value=0.0019 Score=67.37 Aligned_cols=109 Identities=17% Similarity=0.144 Sum_probs=63.8
Q ss_pred cccCCcEEEEEEecCCC--C------C--CCCceEEEEEEEEc-CcEeeeeccceEEecCCC-cccccchhhhhhhhhcc
Q 025709 65 FEYKMPLVWIDLEMTGL--K------I--EVDRILEIACIITD-GKLTKSVEGPDLVIHQTK-ECLDSMGEWCQNHHEAS 132 (249)
Q Consensus 65 ~~~~~~~V~lDlETTGL--~------p--~~d~IIEIgaVv~d-g~~~~~~~~~~~~I~p~~-~~~~~~~~~~~~~h~~t 132 (249)
.+.+-.++.||+||++. + + ..|+||+|++++.. +.... .. ..++.... ..+......++.. +..
T Consensus 316 ~~P~lrvlsfDIE~~~~g~~~~~FP~a~~~~D~Ii~IS~~~~~~~~~~~-~~--~~v~~l~~~~~~~~f~~~~k~~-~~~ 391 (1193)
T 2gv9_A 316 DLPAYKLMCFDIECKAGGEDELAFPVAGHPEDLVIQISCLLYDLSTTAL-EH--VLLFSLGSCDLPESHLNELAAR-GLP 391 (1193)
T ss_dssp CCCCCEEEEEEEEEECCSSCTTSCCCTTSTTSEEEEEEEEEEETTTCCE-EE--EEEEEESCCCCCHHHHHHHHHT-TCC
T ss_pred CCCCceEEEEEEEEcccCCCCCCCCCccccCCceEEEEEEEEeccCCCc-ce--EEEEECCCcCCcchhhhhcccc-cCC
Confidence 35678999999999864 1 2 25899999998653 21111 00 11111111 0011111111100 011
Q ss_pred CCcHHHHhcCCCHHHHHHHHHHHHhcccCCCCcEEEEecH-HHHHHHHHHHH
Q 025709 133 GLTKKVLHSGLTEREAEKQVVEFVKKNVGTYTPLLAGNSV-YVDFMFLKKYM 183 (249)
Q Consensus 133 GIt~~~l~~~p~~~ea~~~~~~fl~~~~~~~~~~lVghn~-~FD~~fL~~~~ 183 (249)
|. .+..-.++.+.+..|++|+..+- +-+|+|||+ .||+++|..-+
T Consensus 392 ~~---~V~~~~sE~eLL~~F~~~I~~~D---PDIIvGyNi~~FDlpyL~~Ra 437 (1193)
T 2gv9_A 392 TP---VVLEFDSEFEMLLAFMTLVKQYG---PEFVTGYNIINFDWPFLLAKL 437 (1193)
T ss_dssp CC---EEEEESSHHHHHHHHHHHHHHHC---CSEEEESSTTTTHHHHHHHHH
T ss_pred Cc---eEEecCCHHHHHHHHHHHHHhcC---CCEEEEcCCcCccHHHHHHHH
Confidence 21 13334678999999999999863 358999999 99999998764
No 30
>1uoc_A POP2; hydrolase, DEDD nuclease, mRNA degradation, poly(A) tail, transcription regulation, repressor, phosphorylation.; 2.3A {Saccharomyces cerevisiae} SCOP: c.55.3.9
Probab=96.84 E-value=0.015 Score=51.55 Aligned_cols=171 Identities=12% Similarity=0.030 Sum_probs=98.6
Q ss_pred ccCCcEEEEEEecCCCCCC---------------------CCceEEEEEEEEcCcEee-----eeccceEEecCCCcccc
Q 025709 66 EYKMPLVWIDLEMTGLKIE---------------------VDRILEIACIITDGKLTK-----SVEGPDLVIHQTKECLD 119 (249)
Q Consensus 66 ~~~~~~V~lDlETTGL~p~---------------------~d~IIEIgaVv~dg~~~~-----~~~~~~~~I~p~~~~~~ 119 (249)
-..-+||++|+|-+|+... .-.|||+|..+.+.+... ..-.|.+..+.......
T Consensus 35 i~~~~fVAmDtEFpGvv~rp~g~f~~~~d~~Yq~lr~nVd~l~iIQlGLt~~~~~g~~p~~~~~~wqFNF~F~~~~d~~~ 114 (289)
T 1uoc_A 35 VSQYNHVSISTEFVGTLARPIGTFRSKVDYHYQTMRANVDFLNPIQLGLSLSDANGNKPDNGPSTWQFNFEFDPKKEIMS 114 (289)
T ss_dssp TTTSCEEEEEEEEEC----------CHHHHHHHHHHHHHTTCEEEEEEEEEECTTCCCCSSSCSEEEEEBCCCTTCCCCC
T ss_pred HhhCCEEEEEeeecceeccCCcccCCCHHHHHHHHHHhhhhccceEEEEEEEccCCCcCCCCcceEEEEEEECCcccccc
Confidence 3457999999999999621 237999998876543321 11123333333222111
Q ss_pred cchhhhhhhhhccCCcH-HHHhcCCCHHHHHHHHHHHHhc--ccCCCCcEEEEecHHHHHHHHHHHHH------------
Q 025709 120 SMGEWCQNHHEASGLTK-KVLHSGLTEREAEKQVVEFVKK--NVGTYTPLLAGNSVYVDFMFLKKYMP------------ 184 (249)
Q Consensus 120 ~~~~~~~~~h~~tGIt~-~~l~~~p~~~ea~~~~~~fl~~--~~~~~~~~lVghn~~FD~~fL~~~~~------------ 184 (249)
.+++. .-.-+|+.= .....+.+..+. .+.+-. .+-.....+|.++..+|+.||-+.+-
T Consensus 115 --~~SI~-fL~~~G~DF~k~~~~GI~~~~F----~ell~~sgLvl~~~v~Witfhg~yDfgyL~k~Lt~~~LP~~~~~F~ 187 (289)
T 1uoc_A 115 --TESLE-LLRKSGINFEKHENLGIDVFEF----SQLLMDSGLMMDDSVTWITYHAAYDLGFLINILMNDSMPNNKEDFE 187 (289)
T ss_dssp --HHHHH-HHHHTTCCHHHHHHHCBCHHHH----HHHHHTSSCSSCTTSEEEESSTTHHHHHHHHHHTTSCCCSSHHHHH
T ss_pred --HHHHH-HHHHcCCChhHHHHcCCCHHHH----HHHHHhcCCccCCCceEEEccCcchHHHHHHHhccccCCcCHHHHH
Confidence 11111 112347753 445677777643 333322 11112357889899999999987652
Q ss_pred -hccCCCCCceeehhHHHHHHHHHCCC---------------ccc-----CCCCCCCCCcHHHHHHHHHHHHHHHHHHhc
Q 025709 185 -DLASLFSHVLVDVSSIKALCMRWYPR---------------DYR-----KVPSKEQKHRALDDIRESIMELKYYKENIF 243 (249)
Q Consensus 185 -~~~~~~~~~~iD~~sl~~la~r~~p~---------------~~~-----~~l~~~~~HrAl~Da~aT~~ll~~~~~~~~ 243 (249)
.+..+|| .+.|+.-|.+.++.+... +.. ...+.+..|.|=.|+..|..++-.+++.+|
T Consensus 188 ~~l~~~FP-~iyD~K~l~~~~~~l~~~~~~~~~~~~~~~~~~L~~lA~~L~v~r~g~~HqAGsDSllT~~~F~kl~~~~~ 266 (289)
T 1uoc_A 188 WWVHQYMP-NFYDLNLVYKIIQEFKNPQLQQSSQQQQQQQYSLTTLADELGLPRFSIFTTTGGQSLLMLLSFCQLSKLSM 266 (289)
T ss_dssp HHHHHHCS-SEEEHHHHHHHHTTTCC-------------CCSHHHHHHHTTCCCCGGGGSHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhCc-cceeHHHHHHHHHhccCcccccccccccccCCCHHHHHHHcCCCccCcccccHHHHHHHHHHHHHHHHHHh
Confidence 1123455 688997665555433321 100 122466789999999999999999999987
Q ss_pred C
Q 025709 244 K 244 (249)
Q Consensus 244 ~ 244 (249)
.
T Consensus 267 ~ 267 (289)
T 1uoc_A 267 H 267 (289)
T ss_dssp T
T ss_pred h
Confidence 3
No 31
>3k59_A POL II, DNA polymerase II; protein-DNA complex, DNA damage, DNA repair, DNA-binding; HET: DNA DOC DCP; 1.92A {Escherichia coli} PDB: 3k57_A* 3k58_A* 3k5l_A* 3k5m_A* 3k5n_A* 3k5o_A* 3maq_A* 1q8i_A*
Probab=95.63 E-value=0.038 Score=55.30 Aligned_cols=93 Identities=13% Similarity=0.084 Sum_probs=58.8
Q ss_pred cccCCcEEEEEEecCCCCCCCCceEEEEEEEEcCcEeeeeccceEEecCCCcccccchhhhhhhhhccCCcHHHHhcCCC
Q 025709 65 FEYKMPLVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTKKVLHSGLT 144 (249)
Q Consensus 65 ~~~~~~~V~lDlETTGL~p~~d~IIEIgaVv~dg~~~~~~~~~~~~I~p~~~~~~~~~~~~~~~h~~tGIt~~~l~~~p~ 144 (249)
.+.+-+.+.||+|+.+ ...|++||.- +..... -+.+.+.... .+ ..|. .+..-++
T Consensus 149 ~~p~lrilsfDIE~~~----~g~i~~I~~~--~~~~~~-----v~~l~~~~~~-----~~------~~~~---~V~~f~~ 203 (786)
T 3k59_A 149 YRPPLKWVSIDIETTR----HGELYCIGLE--GCGQRI-----VYMLGPENGD-----AS------SLDF---ELEYVAS 203 (786)
T ss_dssp CCCCCCEEEEEEEECT----TSCEEEEEEE--ETTEEE-----EEEESSCCSC-----CT------TCSS---EEEEESS
T ss_pred CCCCCeEEEEEEEEcC----CCCEEEEEec--CCCCCe-----EEEEecCCCC-----CC------CCCc---eEEEeCC
Confidence 5778999999999994 2468999853 222211 1223222100 00 0011 1122246
Q ss_pred HHHHHHHHHHHHhcccCCCCcEEEEecH-HHHHHHHHHHHHh
Q 025709 145 EREAEKQVVEFVKKNVGTYTPLLAGNSV-YVDFMFLKKYMPD 185 (249)
Q Consensus 145 ~~ea~~~~~~fl~~~~~~~~~~lVghn~-~FD~~fL~~~~~~ 185 (249)
+.+.+..|.+|+.++- +-+++|||+ .||+++|.+-+..
T Consensus 204 E~~lL~~f~~~i~~~d---PDii~g~N~~~FD~pyL~~Ra~~ 242 (786)
T 3k59_A 204 RPQLLEKLNAWFANYD---PDVIIGWNVVQFDLRMLQKHAER 242 (786)
T ss_dssp HHHHHHHHHHHHHHHC---CSEEEESSTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcC---CCEEEecCCccCcHHHHHHHHHH
Confidence 8899999999999863 347899999 8999999877644
No 32
>3qex_A DNA polymerase, GP43; difluorotoluene nucleoside; HET: DNA DOC DGT; 1.73A {Enterobacteria phage RB69} PDB: 3qei_A* 3qer_A* 3qes_A* 3qet_A* 3qep_A* 3qew_A* 3qev_A* 3s9h_A* 3sq0_A* 4dtn_A* 4dto_A* 4dtp_A* 4dtr_A* 4dts_A* 4dtu_A* 4dtx_A* 4e3s_A* 4fjm_A* 4fjl_A* 3spz_A* ...
Probab=95.22 E-value=0.068 Score=54.20 Aligned_cols=107 Identities=14% Similarity=0.168 Sum_probs=63.5
Q ss_pred CCcEEEEEEecCCCC----CC--CCceEEEEEEEEcCcEeeeeccceEEecCCCcccccchhhhhhh------hhccCCc
Q 025709 68 KMPLVWIDLEMTGLK----IE--VDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNH------HEASGLT 135 (249)
Q Consensus 68 ~~~~V~lDlETTGL~----p~--~d~IIEIgaVv~dg~~~~~~~~~~~~I~p~~~~~~~~~~~~~~~------h~~tGIt 135 (249)
.-+.+.||+|++.-+ |. .++||.|++.--++....+ |. +++++... ..+|.... .+-..+.
T Consensus 107 ~ir~~~~DIEv~~~~~fPd~~~~~~~Ii~It~~d~~~~~~~~---~~-l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 179 (903)
T 3qex_A 107 KIRVANFDIEVTSPDGFPEPSQAKHPIDAITHYDSIDDRFYV---FD-LLNSPYGN---VEEWSIEIAAKLQEQGGDEVP 179 (903)
T ss_dssp GSCEEEEEEECCCTTSSCCTTTCCSCCCEEEEEETTTTEEEE---EE-ECEETTEE---CCCCCHHHHHSCGGGTCCCCC
T ss_pred cccEEEEeEEeCCCCCCCCcccCCCCEEEEEEEeCCCCEEEE---EE-eecccccc---ccccccccccccccccccccc
Confidence 578999999997622 23 6899999998333333221 11 22321110 01221100 0111233
Q ss_pred HHHHhc-----CCCHHHHHHHHHHHHhcccCCCCcEEEEecH-HHHHHHHHHHHH
Q 025709 136 KKVLHS-----GLTEREAEKQVVEFVKKNVGTYTPLLAGNSV-YVDFMFLKKYMP 184 (249)
Q Consensus 136 ~~~l~~-----~p~~~ea~~~~~~fl~~~~~~~~~~lVghn~-~FD~~fL~~~~~ 184 (249)
.+.+.+ -+++.+.+..|.+|+..+- +.+|+|||+ .||+++|.+-+.
T Consensus 180 ~~~~~~v~v~~f~sE~eLL~~F~~~I~~~D---PDIItGyN~~~FDlPYL~~RA~ 231 (903)
T 3qex_A 180 SEIIDKIIYMPFDNEKELLMEYLNFWQQKT---PVILTGWNVESFAIPYVYNRIK 231 (903)
T ss_dssp HHHHTTEEEEEESSHHHHHHHHHHHHHHTC---CSEEECSSTTTTHHHHHHHHHH
T ss_pred cccCCCeEEEEcCCHHHHHHHHHHHHHHhC---CCEEEecCCccCCHHHHHHHHH
Confidence 333332 2578999999999999753 458899999 999999976554
No 33
>3pv8_A DNA polymerase I; DNA polymerase I, protein-DNA complex, thymine-adenine, CLOS conformation; HET: DNA 2DT D3T; 1.52A {Geobacillus kaustophilus} PDB: 3px0_A* 3px4_A* 3px6_A* 3thv_A* 3ti0_A* 4dse_A* 4dsf_A* 4ds4_A* 4dqp_A* 4dqi_A* 4ds5_A* 4e0d_A* 4dqr_A* 4dqq_A* 3tan_A* 3tap_A* 3taq_A* 3tar_A* 4dqs_A* 3hp6_A* ...
Probab=94.65 E-value=0.22 Score=48.21 Aligned_cols=123 Identities=11% Similarity=-0.014 Sum_probs=76.9
Q ss_pred EEEEEEecCCCCCCCCceEEEEEEEEcCcEeeeeccceEEecCCCcccccchhhhhhhhhccCCcHHHHhcCCCHHHHHH
Q 025709 71 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTKKVLHSGLTEREAEK 150 (249)
Q Consensus 71 ~V~lDlETTGL~p~~d~IIEIgaVv~dg~~~~~~~~~~~~I~p~~~~~~~~~~~~~~~h~~tGIt~~~l~~~p~~~ea~~ 150 (249)
-.++|+|++|+++...+++-|+.-. + .. ..+|++ . | ..++.
T Consensus 31 ~~aldtE~~~~~~~~a~Lvgisla~-~-~~-------a~yIp~--------~------~----------------~~~l~ 71 (592)
T 3pv8_A 31 KAALVVEVVEENYHDAPIVGIAVVN-E-HG-------RFFLRP--------E------T----------------ALADP 71 (592)
T ss_dssp EEEEEEECCSSSCTTCCCCEEEEEE-T-TE-------EEEECH--------H------H----------------HTTCH
T ss_pred CcEEEEEEcCCccCcccEEEEEEEc-C-Cc-------eEEEcc--------c------h----------------hhHHH
Confidence 4589999999999888876665431 2 11 133421 0 0 11345
Q ss_pred HHHHHHhcccCCCCcEEEEecHHHHHHHHHHHHHhccCCCCCceeehhHHHHHHHHHCCCcccCC------------CC-
Q 025709 151 QVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMRWYPRDYRKV------------PS- 217 (249)
Q Consensus 151 ~~~~fl~~~~~~~~~~lVghn~~FD~~fL~~~~~~~~~~~~~~~iD~~sl~~la~r~~p~~~~~~------------l~- 217 (249)
.|..|+.+- ....|+||+.||+.+|.+ +|..++...+||. -.++-+.|....++ +.
T Consensus 72 ~Lk~lLed~----~i~KV~hn~K~Dl~vL~~----~Gi~l~g~~fDTm---LAAYLL~p~~~~~~L~~La~~yLg~~l~~ 140 (592)
T 3pv8_A 72 QFVAWLGDE----TKKKSMFDSKRAAVALKW----KGIELCGVSFDLL---LAAYLLDPAQGVDDVAAAAKMKQYEAVRP 140 (592)
T ss_dssp HHHHHHTCT----TSEEEESSHHHHHHHHHH----TTCCCCCEEEEHH---HHHHHHCGGGCCCSHHHHHGGGTCCSSCC
T ss_pred HHHHHHhCC----CCeEEEechHHHHHHHHH----cCCCCCCccchHH---HHHHHcCCCCCCCCHHHHHHHHcCCCCch
Confidence 577788762 246899999999999875 4666667789983 24455556432111 10
Q ss_pred ------C----------CCCCcHHHHHHHHHHHHHHHHHHhc
Q 025709 218 ------K----------EQKHRALDDIRESIMELKYYKENIF 243 (249)
Q Consensus 218 ------~----------~~~HrAl~Da~aT~~ll~~~~~~~~ 243 (249)
. ...+-|..||..+..+++.+.+.+-
T Consensus 141 ~ee~~gkg~~~~~~~~e~~~~YAa~DA~~l~~L~~~L~~~L~ 182 (592)
T 3pv8_A 141 DEAVYGKGAKRAVPDEPVLAEHLVRKAAAIWELERPFLDELR 182 (592)
T ss_dssp HHHHHCSGGGCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 0 0123467799999999888876653
No 34
>2py5_A DNA polymerase; protein-DNA complex, replication, transferase/DNA complex; HET: DNA; 1.60A {Bacillus phage PHI29} SCOP: c.55.3.5 e.8.1.1 PDB: 1xhz_A* 1xhx_A* 2ex3_A* 1xi1_A* 2pyj_A* 2pyl_A* 2pzs_A*
Probab=94.59 E-value=0.11 Score=50.06 Aligned_cols=73 Identities=12% Similarity=0.025 Sum_probs=48.1
Q ss_pred CCcEEEEEEecCCCCCCCCceEEEEEEEEcCcEeeeeccceEEecCCCcccccchhhhhhhhhccCCcHHHHhcCCCHHH
Q 025709 68 KMPLVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTKKVLHSGLTERE 147 (249)
Q Consensus 68 ~~~~V~lDlETTGL~p~~d~IIEIgaVv~dg~~~~~~~~~~~~I~p~~~~~~~~~~~~~~~h~~tGIt~~~l~~~p~~~e 147 (249)
.+.++++|+||+. ++..+.++-||+. ++... ..+. +.. .
T Consensus 5 ~~~i~~~D~Et~~-d~~~~~~~~i~~~--~~~~~---~~~~------------------------~~~--------~--- 43 (575)
T 2py5_A 5 PRKMYSCAFETTT-KVEDCRVWAYGYM--NIEDH---SEYK------------------------IGN--------S--- 43 (575)
T ss_dssp CCCEEEEEEEECC-BTTBCCEEEEEEE--ESSCT---TCEE------------------------EES--------C---
T ss_pred cceEEEEEEEeec-CCCCCceEEEEEE--eCCce---EEEE------------------------ech--------h---
Confidence 4568999999975 7777888888863 32211 0000 000 1
Q ss_pred HHHHHHHHHhcccCCCCcEEEEecHHHHHHHHHHHHHhc
Q 025709 148 AEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDL 186 (249)
Q Consensus 148 a~~~~~~fl~~~~~~~~~~lVghn~~FD~~fL~~~~~~~ 186 (249)
+.+|++|+..+ .+.+++||+.||..||.+++...
T Consensus 44 -l~~fi~~~~~~----~~~i~~hNl~FD~~~l~~~~~~~ 77 (575)
T 2py5_A 44 -LDEFMAWVLKV----QADLYFHNLKFAGAFIINWLERN 77 (575)
T ss_dssp -HHHHHHHHHHH----CCEEEETTHHHHHHHHHHHHHHT
T ss_pred -HHHHHHHHHHc----CCEEEEEChhhhHHHHHHHHHHh
Confidence 35677787654 25688999999999999987543
No 35
>3saf_A Exosome component 10; exoribonuclease, RNA exosome, hydrolase; 2.50A {Homo sapiens} PDB: 3sag_A 3sah_A 2cpr_A
Probab=93.31 E-value=0.71 Score=42.85 Aligned_cols=82 Identities=11% Similarity=0.005 Sum_probs=47.8
Q ss_pred HHHHHHhcccCCCCcEEEEecHHHHHHHHHHHHHhccCCCCCceeehhHHHHHHHHHCCCccc----------CCCC---
Q 025709 151 QVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMRWYPRDYR----------KVPS--- 217 (249)
Q Consensus 151 ~~~~fl~~~~~~~~~~lVghn~~FD~~fL~~~~~~~~~~~~~~~iD~~sl~~la~r~~p~~~~----------~~l~--- 217 (249)
.|..++.+- ..+-||||+.+|+..|.+.+ |... ..++||.- .++.+.+.... ..+.
T Consensus 173 ~L~~lL~dp----~i~KV~H~~k~Dl~~L~~~~---Gi~~-~~~fDT~l---Aa~lL~~~~~gL~~Lv~~~Lg~~l~K~~ 241 (428)
T 3saf_A 173 ILNESLTDP----AIVKVFHGADSDIEWLQKDF---GLYV-VNMFDTHQ---AARLLNLGRHSLDHLLKLYCNVDSNKQY 241 (428)
T ss_dssp GGHHHHTCT----TSEEEESSCHHHHHHHHHHH---CCCC-SSEEEHHH---HHHHTTCSCCSHHHHHHHHHCCCCCCTT
T ss_pred HHHHHHcCC----CceEEEeehHHHHHHHHHHc---CCCc-Cceeechh---HHHHhCCCCCCHHHHHHHHcCCCCCccc
Confidence 445667652 24569999999999997543 4332 35789842 22333232100 0111
Q ss_pred -----------CCCCCcHHHHHHHHHHHHHHHHHHhc
Q 025709 218 -----------KEQKHRALDDIRESIMELKYYKENIF 243 (249)
Q Consensus 218 -----------~~~~HrAl~Da~aT~~ll~~~~~~~~ 243 (249)
....+-|..||..+..++..+++.+-
T Consensus 242 ~~sdW~~rpLs~~q~~YAA~DA~~ll~L~~~L~~~L~ 278 (428)
T 3saf_A 242 QLADWRIRPLPEEMLSYARDDTHYLLYIYDKMRLEMW 278 (428)
T ss_dssp TTSCTTCSSCCHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred cccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11123467899999999988877654
No 36
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=91.74 E-value=0.39 Score=45.50 Aligned_cols=77 Identities=16% Similarity=0.107 Sum_probs=47.3
Q ss_pred cEEEEecHHHHHHHHHHHHH------------hccCCCCCceeehhHHHHH--HHHHCC-------------------Cc
Q 025709 165 PLLAGNSVYVDFMFLKKYMP------------DLASLFSHVLVDVSSIKAL--CMRWYP-------------------RD 211 (249)
Q Consensus 165 ~~lVghn~~FD~~fL~~~~~------------~~~~~~~~~~iD~~sl~~l--a~r~~p-------------------~~ 211 (249)
.+|||||.-+|+.+|-+.|- .+...||. ++||..|... ...+.+ ..
T Consensus 277 kpiVgHN~l~Dl~~l~~~F~~pLP~~~~eFk~~i~~lFP~-i~DTK~la~~~~~~~~~~~~~L~~l~~~l~~~~~~~p~i 355 (507)
T 3d45_A 277 KLVVGHNMLLDVMHTIHQFYCPLPADLNEFKEMAICVFPR-LLDTKLMASTQPFKDIINNTSLAELEKRLKETPFDPPKV 355 (507)
T ss_dssp CEEEESSCHHHHHHHHHHHTCSCCSSHHHHHHHHHHHCSC-EEEHHHHTTSTTHHHHCCCCCHHHHHHHTTSTTCCCCCE
T ss_pred CeEEEechHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCc-eeEhHhhhhcCccccccCCCCHHHHHHHHhccCCCCCeE
Confidence 57999999999999988751 11234553 8898644321 111111 00
Q ss_pred ------ccCCCCCCCCCcHHHHHHHHHHHHHHHHHHh
Q 025709 212 ------YRKVPSKEQKHRALDDIRESIMELKYYKENI 242 (249)
Q Consensus 212 ------~~~~l~~~~~HrAl~Da~aT~~ll~~~~~~~ 242 (249)
..|....+..|.|-.||..|..++-.+...+
T Consensus 356 ~~~~~~~~y~~~~~~~HeAGyDA~mTg~~F~kl~~~l 392 (507)
T 3d45_A 356 ESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANYL 392 (507)
T ss_dssp EECTTSCCCC----CCCCHHHHHHHHHHHHHHHHHHH
T ss_pred EecccccccccCCCCcccHHHHHHHHHHHHHHHHHHH
Confidence 0111224568999999999999987777655
No 37
>2hbj_A Exosome complex exonuclease RRP6; RNA metabolism, RNA surveillance, RNA processing, hydrolase, gene regulation; 2.10A {Saccharomyces cerevisiae} SCOP: a.60.8.4 c.55.3.5 PDB: 2hbk_A 2hbl_A* 2hbm_A*
Probab=87.80 E-value=5.7 Score=36.33 Aligned_cols=81 Identities=11% Similarity=0.046 Sum_probs=47.9
Q ss_pred HHHHHHhcccCCCCcEEEEecHHHHHHHHHHHHHhccCCCCCceeehhHHHHHHHHHCCCccc-------C-C--CCC--
Q 025709 151 QVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMRWYPRDYR-------K-V--PSK-- 218 (249)
Q Consensus 151 ~~~~fl~~~~~~~~~~lVghn~~FD~~fL~~~~~~~~~~~~~~~iD~~sl~~la~r~~p~~~~-------~-~--l~~-- 218 (249)
.|..++.+- ..+.|||++.+|+.+|.+.+ |..... ++||. -.++.+.+.... + + +.+
T Consensus 150 ~L~~lL~d~----~i~KV~h~~k~Dl~~L~~~~---Gi~~~~-~fDt~---lAa~LL~~~~~~L~~L~~~~lg~~l~K~~ 218 (410)
T 2hbj_A 150 ILNEVFTNP----SIVKVFHGAFMDIIWLQRDL---GLYVVG-LFDTY---HASKAIGLPRHSLAYLLENFANFKTSKKY 218 (410)
T ss_dssp GGHHHHTCT----TSEEEESSCHHHHHHHHHHH---CCCCSS-EEEHH---HHHHHHTCSCCSHHHHHHHHSCCCCCCTT
T ss_pred HHHHHHcCC----CceEEEEehHHHHHHHHHHc---CCCcCC-EEEcH---HHHHHhCCCccCHHHHHHHHcCCCCCccc
Confidence 456677652 24579999999999998753 444333 88984 233334443110 0 1 111
Q ss_pred ------------CCCCcHHHHHHHHHHHHHHHHHHh
Q 025709 219 ------------EQKHRALDDIRESIMELKYYKENI 242 (249)
Q Consensus 219 ------------~~~HrAl~Da~aT~~ll~~~~~~~ 242 (249)
...+-|..||..+..++..+++.+
T Consensus 219 ~~sdW~~rpL~~~q~~YAa~Da~~ll~L~~~L~~~L 254 (410)
T 2hbj_A 219 QLADWRIRPLSKPMTAAARADTHFLLNIYDQLRNKL 254 (410)
T ss_dssp TTSCTTCSSCCHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred cccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111226688999889888877665
No 38
>2a1r_A Poly(A)-specific ribonuclease PARN; DEDD, nuclease domain, hydrolase-RNA complex; 2.60A {Homo sapiens} PDB: 2a1s_A
Probab=87.31 E-value=2.9 Score=38.72 Aligned_cols=77 Identities=18% Similarity=0.147 Sum_probs=45.1
Q ss_pred cEEEEecHHHHHHHHHHHHH------------hccCCCCCceeehhHHHHH---------------HHHHC------CCc
Q 025709 165 PLLAGNSVYVDFMFLKKYMP------------DLASLFSHVLVDVSSIKAL---------------CMRWY------PRD 211 (249)
Q Consensus 165 ~~lVghn~~FD~~fL~~~~~------------~~~~~~~~~~iD~~sl~~l---------------a~r~~------p~~ 211 (249)
-+|||||.-+|+-++-+.|- .+...|| .++||..|... ...+. |..
T Consensus 282 KpiVGHN~llDl~~l~~~F~~pLP~~~~eFk~~i~~lFP-~i~DTK~la~~~~~~~~~~~~sL~~l~~~l~~~~~~~p~i 360 (430)
T 2a1r_A 282 KLVIGHNMLLDVMHTVHQFYCPLPADLSEFKEMTTCVFP-RLLDTKLMASTQPFKDIINNTSLAELEKRLKETPFNPPKV 360 (430)
T ss_dssp CEEEESSCHHHHHHHHHHHTCCCCSSHHHHHHHHHHHCS-SEEEHHHHHTSTTTTTTCSCCSHHHHHHHTTSTTCCCCCE
T ss_pred CceEechhHHHHHHHHHHhccCCCCCHHHHHHHHHHHCC-ceeehHHhhhccchhhccCCCCHHHHHHHHHhCCCCCCee
Confidence 36899999999998877651 1123455 38898544211 01110 000
Q ss_pred ------ccCCCCCCCCCcHHHHHHHHHHHHHHHHHHh
Q 025709 212 ------YRKVPSKEQKHRALDDIRESIMELKYYKENI 242 (249)
Q Consensus 212 ------~~~~l~~~~~HrAl~Da~aT~~ll~~~~~~~ 242 (249)
..|....+..|.|-.||.+|..++-.+...+
T Consensus 361 ~~~~~~~~y~~~~~~~HeAGyDa~mTG~vFi~l~~~l 397 (430)
T 2a1r_A 361 ESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANYL 397 (430)
T ss_dssp EECTTCCCC-----CCCCHHHHHHHHHHHHHHHHHHH
T ss_pred ecCCCccccccCCCCccchHHHHHHHHHHHHHHHHHH
Confidence 0111134677999999999999886666554
No 39
>1vk0_A Hypothetical protein; homohexamer, AT5G06450, struc genomics, protein structure initiative, center for eukaryot structural genomics, CESG; 2.10A {Arabidopsis thaliana} SCOP: c.55.3.5 PDB: 2q3s_A
Probab=84.71 E-value=8.1 Score=31.94 Aligned_cols=43 Identities=16% Similarity=0.277 Sum_probs=30.2
Q ss_pred HHHHHHHhcccCCCCcEEEEecHHHHHHHHHHHHHhccCCCCCceeehhHH
Q 025709 150 KQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSI 200 (249)
Q Consensus 150 ~~~~~fl~~~~~~~~~~lVghn~~FD~~fL~~~~~~~~~~~~~~~iD~~sl 200 (249)
..|.+++.+- ..+.|||++++|+..|.+.+ | ..+.+++|+..+
T Consensus 98 ~~L~~lL~d~----~i~Kvg~~~~~D~~~L~~~~---g-~~~~~~~Dl~~l 140 (206)
T 1vk0_A 98 KDLYRFFASK----FVTFVGVQIEEDLDLLRENH---G-LVIRNAINVGKL 140 (206)
T ss_dssp HHHHHHHTCS----SSEEEESSCHHHHHHHHHHH---C-CCCSSEEEHHHH
T ss_pred HHHHHHhcCC----CceEEEeccHHHHHHHHHhc---C-CCcCCeeeHHHH
Confidence 3466788762 25679999999999998764 3 234568898533
No 40
>2e6m_A Werner syndrome ATP-dependent helicase homolog; APO form, hydrolase; 2.00A {Mus musculus} PDB: 2e6l_A 2fby_A 2fbv_A 2fbx_A 2fbt_A 2fc0_A*
Probab=83.46 E-value=3.3 Score=33.69 Aligned_cols=39 Identities=13% Similarity=0.108 Sum_probs=27.0
Q ss_pred HHHHHHhcccCCCCcEEEEecHHHHHHHHHHHHHhccCCCCCceeeh
Q 025709 151 QVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDV 197 (249)
Q Consensus 151 ~~~~fl~~~~~~~~~~lVghn~~FD~~fL~~~~~~~~~~~~~~~iD~ 197 (249)
.+..++.+- ....||||+.+|+..|.+.+ |..+.. .+|+
T Consensus 87 ~L~~lL~d~----~i~Kv~~~~k~D~~~L~~~~---gi~~~~-~fDl 125 (208)
T 2e6m_A 87 GLKMLLENK----SIKKAGVGIEGDQWKLLRDF---DVKLES-FVEL 125 (208)
T ss_dssp HHHHHHTCT----TSEEEESSHHHHHHHHHHHH---CCCCCS-EEEH
T ss_pred HHHHHhcCC----CceEEEEeeHHHHHHHHHHC---CCCCCC-EEEH
Confidence 456677652 24679999999999998743 444444 7883
No 41
>3cym_A Uncharacterized protein BAD_0989; structural genomics, unknown function; 2.10A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID}
Probab=76.03 E-value=48 Score=30.41 Aligned_cols=78 Identities=13% Similarity=-0.049 Sum_probs=46.2
Q ss_pred HHHHHHHHhcccCCCCcEEEEecHHHHHHHHHHHHHhccCCCCCceeehhHHHHHHHHHCCCcccCC------------C
Q 025709 149 EKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMRWYPRDYRKV------------P 216 (249)
Q Consensus 149 ~~~~~~fl~~~~~~~~~~lVghn~~FD~~fL~~~~~~~~~~~~~~~iD~~sl~~la~r~~p~~~~~~------------l 216 (249)
+..|..++.+ ...|+|++.+|+..|+ . +|.... ..+|+. -.++-+.+. .++ +
T Consensus 84 l~~L~~lL~d------~~KV~h~~k~Dl~~L~-~---~gi~~~-~~fDt~---lAa~lL~~~--~~gL~~L~~~~lg~~~ 147 (440)
T 3cym_A 84 WNDFNRAVGD------AVWILHDSLQDLPGFD-E---LGMEPQ-RLFDTE---IAARLLGLK--RFGLAAVTEHFLGLTL 147 (440)
T ss_dssp HHHHHHHHTT------CEEEESSHHHHHHHHH-H---HTCCCC-EEEEHH---HHHHHTTCS--SCSHHHHHHHHHCEEC
T ss_pred HHHHHHHHCC------CCEEEEcCHHHHHHHH-H---cCCcCC-ceehHH---HHHHHhCCC--CCCHHHHHHHHhCCCc
Confidence 3456677765 2579999999999886 2 344333 788983 223333332 110 0
Q ss_pred CC--------------CCCCcHHHHHHHHHHHHHHHHHHh
Q 025709 217 SK--------------EQKHRALDDIRESIMELKYYKENI 242 (249)
Q Consensus 217 ~~--------------~~~HrAl~Da~aT~~ll~~~~~~~ 242 (249)
.+ ....-|..||..+..++..+++.+
T Consensus 148 ~K~~~~sdw~~rpLs~~q~~YAa~Da~~Ll~L~~~L~~~L 187 (440)
T 3cym_A 148 AKEHSAADWSYRPLPRDWRNYAALDVELLIELETKMRAEL 187 (440)
T ss_dssp CCCCTTCCTTCSSCCHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred ccccccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 111226788888888888776654
No 42
>3ikm_A DNA polymerase subunit gamma-1; human mitochondrial DNA polymerase, disease mutation, DNA replication, DNA-binding, DNA-directed DNA polymerase; HET: DNA; 3.24A {Homo sapiens}
Probab=69.18 E-value=0.31 Score=50.03 Aligned_cols=35 Identities=17% Similarity=0.150 Sum_probs=25.5
Q ss_pred cEEEEecHHHHHHHHHHHHHhccCCCCCceeehhHHH
Q 025709 165 PLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIK 201 (249)
Q Consensus 165 ~~lVghn~~FD~~fL~~~~~~~~~~~~~~~iD~~sl~ 201 (249)
-+|||||+.||+..+..++..- .-..+.+||++|.
T Consensus 195 rlIVGHNVsyDRARI~EeY~l~--~sk~rFlDTMSLH 229 (1172)
T 3ikm_A 195 QLVVGHNVSFDRAHIREQYLIQ--GSRMRFLDTMSMH 229 (1172)
T ss_dssp CCCBCBCSSSSTTGGGTSSCSS--CCCCCCCBTTHHH
T ss_pred cEEEeCCcchhHHHHHHHHhcc--cCCceeeechhhh
Confidence 3689999999999998764221 1235689999874
No 43
>1yt3_A Ribonuclease D, RNAse D; exoribonuclease, exonuclease, hydrolase, tRNA processing, hydrolase,translation; 1.60A {Escherichia coli} SCOP: a.60.8.3 a.60.8.3 c.55.3.5
Probab=65.25 E-value=46 Score=29.58 Aligned_cols=82 Identities=11% Similarity=-0.074 Sum_probs=48.5
Q ss_pred HHHHHHHhcccCCCCcEEEEecHHHHHHHHHHHHHhccCCCCCceeehhHHHHHHHHHCCCccc--------C-C--CCC
Q 025709 150 KQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMRWYPRDYR--------K-V--PSK 218 (249)
Q Consensus 150 ~~~~~fl~~~~~~~~~~lVghn~~FD~~fL~~~~~~~~~~~~~~~iD~~sl~~la~r~~p~~~~--------~-~--l~~ 218 (249)
..|..++.+- ..+.||||+.+|+.+|.+.+ |.... .++||. -.++.+.|.... + + +.+
T Consensus 64 ~~L~~ll~d~----~i~Kv~h~~k~Dl~~L~~~~---Gi~~~-~~fDt~---lAa~lL~~~~~~~L~~L~~~~l~~~l~K 132 (375)
T 1yt3_A 64 SPLKAILRDP----SITKFLHAGSEDLEVFLNVF---GELPQ-PLIDTQ---ILAAFCGRPMSWGFASMVEEYSGVTLDK 132 (375)
T ss_dssp HHHHHHHHCT----TSEEEESSCHHHHHHHHHHH---SSCCS-SEEEHH---HHHHHTTCCTTCCHHHHHHHHHCCCCCC
T ss_pred HHHHHHHcCC----CceEEEeeHHHHHHHHHHHc---CCCCC-cEEEcH---HHHHHcCCCCChhHHHHHHHHcCCCCCC
Confidence 4466777752 24579999999999998643 44333 678984 233434442110 0 1 111
Q ss_pred --------------CCCCcHHHHHHHHHHHHHHHHHHh
Q 025709 219 --------------EQKHRALDDIRESIMELKYYKENI 242 (249)
Q Consensus 219 --------------~~~HrAl~Da~aT~~ll~~~~~~~ 242 (249)
...+-|..|+..+..++..+++.+
T Consensus 133 ~~~~sdw~~rpL~~~q~~YAa~Da~~l~~L~~~L~~~L 170 (375)
T 1yt3_A 133 SESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVET 170 (375)
T ss_dssp TTTTSCTTSSSCCHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred CcccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 011225678888889888887665
No 44
>2a1r_A Poly(A)-specific ribonuclease PARN; DEDD, nuclease domain, hydrolase-RNA complex; 2.60A {Homo sapiens} PDB: 2a1s_A
Probab=55.71 E-value=12 Score=34.39 Aligned_cols=15 Identities=27% Similarity=0.419 Sum_probs=13.3
Q ss_pred CCcEEEEEEecCCCC
Q 025709 68 KMPLVWIDLEMTGLK 82 (249)
Q Consensus 68 ~~~~V~lDlETTGL~ 82 (249)
.-+||++|+|.||+.
T Consensus 21 ~~~fVAiD~Ef~Gi~ 35 (430)
T 2a1r_A 21 EADFFAIDGEFSGIS 35 (430)
T ss_dssp HCSEEEEEEEESCSC
T ss_pred cCCEEEEeeeecccc
Confidence 358999999999995
No 45
>3q7c_A Nucleoprotein; deddh exonuclease, 3' exonuclease, hydrolase; 1.50A {Lassa virus} PDB: 3q7b_A 4fvu_A
Probab=31.63 E-value=2e+02 Score=24.02 Aligned_cols=136 Identities=18% Similarity=0.123 Sum_probs=69.3
Q ss_pred CcEEEEEEecCCCCCCCCceEEEEEEEE-cCcEeeeeccceEEecCCCcccccchhhhhhhhhccCCcHHHHhcCCCHHH
Q 025709 69 MPLVWIDLEMTGLKIEVDRILEIACIIT-DGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTKKVLHSGLTERE 147 (249)
Q Consensus 69 ~~~V~lDlETTGL~p~~d~IIEIgaVv~-dg~~~~~~~~~~~~I~p~~~~~~~~~~~~~~~h~~tGIt~~~l~~~p~~~e 147 (249)
..=.|+|+|-.-.+| +|||.--. .|+- .+++-.|... ..+-.....-+||.-.++.++.+ -
T Consensus 57 ~~ttWiDIEG~p~DP-----VElAiyQP~sg~Y------IHcyR~P~D~-----K~FK~~SKySHGillkDl~~aqP--G 118 (243)
T 3q7c_A 57 NAKTWMDIEGRPEDP-----VEIALYQPSSGCY------IHFFREPTDL-----KQFKQDAKYSHGIDVTDLFATQP--G 118 (243)
T ss_dssp TSCCEEEEESCTTSC-----SEEEEEETTTTEE------EEEECCCSCH-----HHHHHHHHHTTCBCGGGGTTBCT--T
T ss_pred CCCeEEecCCCCCCC-----eEEEEeccCCCcE------EEEecCCcch-----hhhcccCccccceehhhhhhcCC--c
Confidence 444589999986665 78987632 2222 2344444332 22222222345999889887654 1
Q ss_pred HHHHHHHHHhcccCCCCcEEEEecHHHHHHHHHHHHHhccCCCCCceeehhHHHHHHHHH-------CCCcc--------
Q 025709 148 AEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMRW-------YPRDY-------- 212 (249)
Q Consensus 148 a~~~~~~fl~~~~~~~~~~lVghn~~FD~~fL~~~~~~~~~~~~~~~iD~~sl~~la~r~-------~p~~~-------- 212 (249)
....+++.|=.. -+|-+ ..+=|+.-|-.. .| .-...+||+.--.+-+|.+ +..+.
T Consensus 119 L~S~vi~~LP~n-----MVlT~-QGsDDIrkLld~---hG-RrDiKlIDV~lt~eqaR~FEd~VWd~f~~LC~~H~GvVv 188 (243)
T 3q7c_A 119 LTSAVIDALPRN-----MVITC-QGSDDIRKLLES---QG-RKDIKLIDIALSKTDSRKYENAVWDQYKDLCHMHTGVVV 188 (243)
T ss_dssp HHHHHHHHSCTT-----CEEEE-SSHHHHHHHHHH---TT-CTTSEEEECCCCHHHHTTTHHHHHHHHGGGCCCBCSCEE
T ss_pred hHHHHHHhCCcC-----cEEEe-eChHHHHHHHHh---cC-CccceEEEeecCHHHHHHHHHHHHHHHHHHHHhcCceEE
Confidence 244444444332 34545 445565443322 22 2244578875222333321 11111
Q ss_pred ----cCCCCCCCCCcHHHHHHHHH
Q 025709 213 ----RKVPSKEQKHRALDDIRESI 232 (249)
Q Consensus 213 ----~~~l~~~~~HrAl~Da~aT~ 232 (249)
+.+.+....|-||=||.+--
T Consensus 189 ~KKKkg~~~s~~PHCALLDCIMF~ 212 (243)
T 3q7c_A 189 EKKKRGGKEEITPHCALMDCIMFD 212 (243)
T ss_dssp CCCSSSSCCEECCCCHHHHHHHHH
T ss_pred eccccCCCCCCCchHHHHHHHHHH
Confidence 11222367899999998743
No 46
>2x5h_A ORF 131; viral protein; 1.80A {Sulfolobus islandicus rudivirus 1} PDB: 2x5g_A* 2x5t_A
Probab=22.80 E-value=39 Score=24.02 Aligned_cols=56 Identities=16% Similarity=0.272 Sum_probs=30.2
Q ss_pred ceEEEEEEEEcCcEeeeeccceEEecCCCcccccchhhhhhhhhccCCcHHHHhcCCCHHHHHHHHHHHHhc
Q 025709 87 RILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTKKVLHSGLTEREAEKQVVEFVKK 158 (249)
Q Consensus 87 ~IIEIgaVv~dg~~~~~~~~~~~~I~p~~~~~~~~~~~~~~~h~~tGIt~~~l~~~p~~~ea~~~~~~fl~~ 158 (249)
-+++|-|+--+++.. |...||..... -++ -|||+++-++-.-+.+.++..-.|+.+
T Consensus 35 ivlQiNAvP~g~~ir-----~SMTiHs~nNf-------kKQ----IGiTa~DA~dL~lIa~FLeKYS~~Lnk 90 (97)
T 2x5h_A 35 IVVQLNAVPQDGKIR-----YSMTIHSQNNF-------RKQ----IGITPQDAEDLKLIAEFLEKYSDFLNE 90 (97)
T ss_dssp EEEEEEEEEETTEEE-----EEEEEEETTEE-------EEE----EEECGGGHHHHHHHHHHHHHTHHHHHH
T ss_pred EEEEeeccCCCCeeE-----EEEEEecccch-------hhh----cCCCcccHHHHHHHHHHHHHHHHHHHH
Confidence 457999987777765 45667654322 112 288875544333333344444444443
No 47
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=22.50 E-value=39 Score=31.68 Aligned_cols=46 Identities=11% Similarity=0.072 Sum_probs=29.4
Q ss_pred CCcEEEEEEecCCCCCC-------------------------CCceEEEEEEEEc--CcEee-eeccceEEecC
Q 025709 68 KMPLVWIDLEMTGLKIE-------------------------VDRILEIACIITD--GKLTK-SVEGPDLVIHQ 113 (249)
Q Consensus 68 ~~~~V~lDlETTGL~p~-------------------------~d~IIEIgaVv~d--g~~~~-~~~~~~~~I~p 113 (249)
.-+||++|+|.||+... .-.|||||..+.+ ++... ....|.+.+-|
T Consensus 23 ~~~fvaiD~Ef~Gi~~~~~~~~~~~~~~t~~~~Y~~~r~~v~~~~iiQlGlt~f~~~~~~~~~~~~~fNf~~fp 96 (507)
T 3d45_A 23 EADFFAIDGEFSGISDGPSVTALTSGFDTPEERYQKLKKHSMDFLLFQFGLCAFKYDHTDSKHVTKSFNFYVFP 96 (507)
T ss_dssp HCSEEEEEEEESCSCC--------CBSCCHHHHHHHHHHHHTTBCEEEEEEEEEEECSSSSCEEEEEEEEEBCC
T ss_pred cCCEEEEeeeccCcCCCCCccccccccCCHHHHHHHHHHHHHhcccceEEEEEEecCCCCCceeEEeEEEEecC
Confidence 46899999999999532 1269999977543 43211 12346666654
No 48
>3dqz_A Alpha-hydroxynitrIle lyase-like protein; A/B-hydrloase fold, cyanogenesis; 2.50A {Arabidopsis thaliana} SCOP: c.69.1.0
Probab=20.09 E-value=91 Score=24.10 Aligned_cols=31 Identities=26% Similarity=0.144 Sum_probs=23.3
Q ss_pred CCCHHHHHHHHHHHHhcccCCCCcEEEEecH
Q 025709 142 GLTEREAEKQVVEFVKKNVGTYTPLLAGNSV 172 (249)
Q Consensus 142 ~p~~~ea~~~~~~fl~~~~~~~~~~lVghn~ 172 (249)
..++.+....+.+++.......+.+||||+.
T Consensus 52 ~~~~~~~~~~l~~~l~~l~~~~~~~lvGhS~ 82 (258)
T 3dqz_A 52 VETVDEYSKPLIETLKSLPENEEVILVGFSF 82 (258)
T ss_dssp CCSHHHHHHHHHHHHHTSCTTCCEEEEEETT
T ss_pred cccHHHhHHHHHHHHHHhcccCceEEEEeCh
Confidence 4578888889999997653224678999986
Done!