Query 025710
Match_columns 249
No_of_seqs 93 out of 118
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 15:55:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025710.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025710hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1kdl_A YOPD protein; yersinia, 21.9 47 0.0016 20.3 1.7 15 131-145 4-18 (26)
2 2k1e_A Water soluble analogue 11.0 1.9E+02 0.0065 21.1 3.1 29 213-241 72-100 (103)
3 2juz_A UPF0352 protein HI0840; 10.4 1E+02 0.0036 23.3 1.4 12 216-227 33-44 (80)
4 2juw_A UPF0352 protein SO_2176 10.0 1.1E+02 0.0037 23.2 1.4 13 215-227 32-44 (80)
5 2jpq_A UPF0352 protein VP2129; 10.0 1.1E+02 0.0038 23.3 1.4 13 215-227 32-44 (83)
6 2jr2_A UPF0352 protein CPS_261 8.5 1.6E+02 0.0054 22.1 1.8 13 215-227 32-44 (76)
7 1jfi_B DR1 protein, transcript 8.4 1.6E+02 0.0054 25.0 1.9 28 217-244 80-107 (179)
8 2jrx_A UPF0352 protein YEJL; h 8.3 1.6E+02 0.0056 22.4 1.8 13 215-227 32-44 (83)
9 2gjh_A Designed protein; oblig 7.8 1.2E+02 0.004 21.5 0.7 17 157-173 33-50 (62)
10 2ih3_C Voltage-gated potassium 5.6 8.6E+02 0.029 18.1 4.7 24 215-238 95-118 (122)
No 1
>1kdl_A YOPD protein; yersinia, amphipathic alpha helix, beta turn, structural protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=21.87 E-value=47 Score=20.34 Aligned_cols=15 Identities=20% Similarity=0.310 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHhhhh
Q 025710 131 MQGVAMLLQNRYQRQ 145 (249)
Q Consensus 131 ~qs~Vq~lQ~~YQrg 145 (249)
+--++|++|-+||+.
T Consensus 4 MkDvlql~qQy~qsh 18 (26)
T 1kdl_A 4 MKDVLRLIEQYVSSH 18 (26)
T ss_dssp HHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHH
Confidence 556899999999985
No 2
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A
Probab=11.02 E-value=1.9e+02 Score=21.13 Aligned_cols=29 Identities=10% Similarity=0.072 Sum_probs=15.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhhhh
Q 025710 213 ALLVLMAVGNFINTVQTLMTKSRFKAKMK 241 (249)
Q Consensus 213 llf~il~~GNf~TT~~vv~~K~~~~~~~~ 241 (249)
++..+.+++-+...+..+.+....+.+++
T Consensus 72 ~~~~l~G~~~~~~~~~~i~~~~~~~~~~~ 100 (103)
T 2k1e_A 72 EQVMKAGIEVFALVTAALATDFVRREEER 100 (103)
T ss_dssp HHHHHHHHHHHHHTHHHHHTTGGGHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44445555555555566665555544444
No 3
>2juz_A UPF0352 protein HI0840; homodimer, helix, structural genomics, PSI-2, protein structure initiative; NMR {Haemophilus influenzae} SCOP: a.284.1.1
Probab=10.37 E-value=1e+02 Score=23.30 Aligned_cols=12 Identities=33% Similarity=0.670 Sum_probs=9.8
Q ss_pred HHHHHhHHHHHH
Q 025710 216 VLMAVGNFINTV 227 (249)
Q Consensus 216 ~il~~GNf~TT~ 227 (249)
-+|.+||++|-+
T Consensus 33 SLMvLGN~vTnl 44 (80)
T 2juz_A 33 SLIALGNMASNL 44 (80)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 468899999976
No 4
>2juw_A UPF0352 protein SO_2176; homodimer, helix, dimer, all alpha, northeast structural GEN consortium, NESG, structural genomics; NMR {Shewanella oneidensis} SCOP: a.284.1.1 PDB: 2qti_A
Probab=10.04 E-value=1.1e+02 Score=23.19 Aligned_cols=13 Identities=46% Similarity=0.774 Sum_probs=10.2
Q ss_pred HHHHHHhHHHHHH
Q 025710 215 LVLMAVGNFINTV 227 (249)
Q Consensus 215 f~il~~GNf~TT~ 227 (249)
.-+|.+||++|-+
T Consensus 32 LSLMvLGN~vTnl 44 (80)
T 2juw_A 32 LSLMALGNCVTHL 44 (80)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3468899999865
No 5
>2jpq_A UPF0352 protein VP2129; dimer, all alpha, homodimer, structural genomics, PSI-2, protein structure initiative; NMR {Vibrio parahaemolyticus} SCOP: a.284.1.1
Probab=9.96 E-value=1.1e+02 Score=23.32 Aligned_cols=13 Identities=46% Similarity=0.682 Sum_probs=10.2
Q ss_pred HHHHHHhHHHHHH
Q 025710 215 LVLMAVGNFINTV 227 (249)
Q Consensus 215 f~il~~GNf~TT~ 227 (249)
.-+|.+||++|-+
T Consensus 32 LSLMvLGNmvTNl 44 (83)
T 2jpq_A 32 LTLMIAGNIATNV 44 (83)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3468899999865
No 6
>2jr2_A UPF0352 protein CPS_2611; dimer, all alpha helix, homodimer, structural genomics, PSI, structure initiative; NMR {Colwellia psychrerythraea} SCOP: a.284.1.1 PDB: 2ota_A
Probab=8.51 E-value=1.6e+02 Score=22.11 Aligned_cols=13 Identities=38% Similarity=0.769 Sum_probs=10.3
Q ss_pred HHHHHHhHHHHHH
Q 025710 215 LVLMAVGNFINTV 227 (249)
Q Consensus 215 f~il~~GNf~TT~ 227 (249)
.-+|.+||++|-+
T Consensus 32 LSLMvLGN~vTnl 44 (76)
T 2jr2_A 32 LALMCLGNAVTNI 44 (76)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3468899999876
No 7
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=8.35 E-value=1.6e+02 Score=25.02 Aligned_cols=28 Identities=14% Similarity=0.385 Sum_probs=23.4
Q ss_pred HHHHhHHHHHHHHHHHHHHHHhhhhhcc
Q 025710 217 LMAVGNFINTVQTLMTKSRFKAKMKKSK 244 (249)
Q Consensus 217 il~~GNf~TT~~vv~~K~~~~~~~~~~~ 244 (249)
-+.+++|+..+.....++|...+.||++
T Consensus 80 ~LgF~~fv~~lk~~L~~yre~~~~kkr~ 107 (179)
T 1jfi_B 80 SLGFGSYISEVKEVLQECKTVALKRRKA 107 (179)
T ss_dssp HHTTGGGHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcChHHHHHHHHHHHHHHHHHHHhCccc
Confidence 7789999999999999988877666654
No 8
>2jrx_A UPF0352 protein YEJL; homodimer, alpha helix, structural genomics, PSI-2, protein initiative, northeast structural genomics consortium, NESG; NMR {Escherichia coli} SCOP: a.284.1.1
Probab=8.28 E-value=1.6e+02 Score=22.38 Aligned_cols=13 Identities=38% Similarity=0.797 Sum_probs=10.2
Q ss_pred HHHHHHhHHHHHH
Q 025710 215 LVLMAVGNFINTV 227 (249)
Q Consensus 215 f~il~~GNf~TT~ 227 (249)
.-+|.+||++|-+
T Consensus 32 LSLMvLGNmvTNl 44 (83)
T 2jrx_A 32 LSLMVLGNMVTNL 44 (83)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3468899999865
No 9
>2gjh_A Designed protein; obligate symmetric HOMO-dimer, de novo protein; NMR {}
Probab=7.79 E-value=1.2e+02 Score=21.52 Aligned_cols=17 Identities=47% Similarity=1.038 Sum_probs=9.5
Q ss_pred cccceee-cCccccccch
Q 025710 157 KRMDVVW-GETAGVDGQL 173 (249)
Q Consensus 157 ~~MDvt~-g~~~~~~g~L 173 (249)
|++.+|| |++.-+||||
T Consensus 33 ndinvtwdgdtvtvegql 50 (62)
T 2gjh_A 33 NDINVTWDGDTVTVEGQL 50 (62)
T ss_dssp CSCEEEECSSCEEEEEEC
T ss_pred ccceeEEcCCEEEEEeEE
Confidence 4466676 4555566653
No 10
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...
Probab=5.56 E-value=8.6e+02 Score=18.09 Aligned_cols=24 Identities=13% Similarity=0.041 Sum_probs=10.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHh
Q 025710 215 LVLMAVGNFINTVQTLMTKSRFKA 238 (249)
Q Consensus 215 f~il~~GNf~TT~~vv~~K~~~~~ 238 (249)
..+.+++-+......+.+....+.
T Consensus 95 ~~~~Gi~~~~~~~~~i~~~~~~~~ 118 (122)
T 2ih3_C 95 VMVAGITSFGLVTAALATWFVGRE 118 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444333
Done!