Query 025710
Match_columns 249
No_of_seqs 93 out of 118
Neff 3.8
Searched_HMMs 13730
Date Mon Mar 25 15:55:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025710.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/025710hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1r3jc_ f.14.1.1 (C:) Potassiu 17.2 98 0.0072 21.0 4.9 30 211-240 70-99 (103)
2 d1d8ja_ a.4.5.18 (A:) The cent 14.6 51 0.0037 23.3 2.7 35 128-162 10-47 (81)
3 d2qtia1 a.284.1.1 (A:8-72) Unc 12.1 41 0.003 22.9 1.4 13 215-227 25-37 (65)
4 d2otaa1 a.284.1.1 (A:7-68) Hyp 12.0 41 0.003 22.7 1.4 12 216-227 27-38 (62)
5 d2a65a1 f.54.1.1 (A:5-513) Na( 10.0 3E+02 0.022 23.2 7.0 41 65-105 419-460 (509)
6 d2juza1 a.284.1.1 (A:1-72) Unc 10.0 52 0.0038 22.7 1.4 12 216-227 33-44 (72)
7 d2jrxa1 a.284.1.1 (A:1-75) Unc 9.9 53 0.0038 22.9 1.4 13 215-227 32-44 (75)
8 d2jpqa1 a.284.1.1 (A:1-75) Hyp 9.3 57 0.0042 22.7 1.4 14 215-228 32-45 (75)
9 d1iyjb1 a.170.1.1 (B:2403-2598 7.1 2.7E+02 0.019 22.1 4.9 59 74-145 128-191 (196)
10 d1oedb_ f.36.1.1 (B:) Acetylch 6.6 2.1E+02 0.015 21.4 4.0 21 63-83 68-88 (250)
No 1
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=17.17 E-value=98 Score=20.99 Aligned_cols=30 Identities=10% Similarity=0.055 Sum_probs=16.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhhh
Q 025710 211 CGALLVLMAVGNFINTVQTLMTKSRFKAKM 240 (249)
Q Consensus 211 ~~llf~il~~GNf~TT~~vv~~K~~~~~~~ 240 (249)
.++...+++++-+...+..+.+....+.++
T Consensus 70 ~~~~~~~~Gi~~~~~~~~~i~~~~~~~~~~ 99 (103)
T d1r3jc_ 70 VAVVVMVAGITSFGLVTAALATWFVGREQE 99 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555665655666666655554443
No 2
>d1d8ja_ a.4.5.18 (A:) The central core domain of TFIIE beta {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.62 E-value=51 Score=23.25 Aligned_cols=35 Identities=14% Similarity=0.286 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHh---HhcCcccccee
Q 025710 128 WAMMQGVAMLLQNRYQRQRLYTRI---ALGKAKRMDVV 162 (249)
Q Consensus 128 fs~~qs~Vq~lQ~~YQrg~LYrl~---ALGe~~~MDvt 162 (249)
|++.--+|.+|-.|+|+|-=+-|- -|.|.+.+||.
T Consensus 10 FgvLaKIV~~MK~RHq~g~~hPLtLeEiLDEt~~~Di~ 47 (81)
T d1d8ja_ 10 FGVLAKIVNYMKTRHQRGDTHPLTLDEILDETQHLDIG 47 (81)
T ss_dssp HHHHHHHHHHHHHHHHHTCCSCBCHHHHHHHHTCSSCC
T ss_pred chHHHHHHHHHHHHHhcCCCCCccHHHHHHHHhhcccc
Confidence 789999999999999998654432 36667777775
No 3
>d2qtia1 a.284.1.1 (A:8-72) Uncharacterized protein SO2176 {Shewanella oneidensis [TaxId: 70863]}
Probab=12.07 E-value=41 Score=22.89 Aligned_cols=13 Identities=46% Similarity=0.774 Sum_probs=10.1
Q ss_pred HHHHHHhHHHHHH
Q 025710 215 LVLMAVGNFINTV 227 (249)
Q Consensus 215 f~il~~GNf~TT~ 227 (249)
.-+|.+||.+|-+
T Consensus 25 LSLMvLGN~vTni 37 (65)
T d2qtia1 25 LSLMALGNCVTHL 37 (65)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3468899999865
No 4
>d2otaa1 a.284.1.1 (A:7-68) Hypothetical protein CPS2611 {Colwellia psychrerythraea [TaxId: 28229]}
Probab=12.01 E-value=41 Score=22.68 Aligned_cols=12 Identities=33% Similarity=0.722 Sum_probs=9.9
Q ss_pred HHHHHhHHHHHH
Q 025710 216 VLMAVGNFINTV 227 (249)
Q Consensus 216 ~il~~GNf~TT~ 227 (249)
-+|.+||.+|-+
T Consensus 27 SLMvLGN~vTni 38 (62)
T d2otaa1 27 ALMCLGNAVTNI 38 (62)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 468899999975
No 5
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]}
Probab=10.02 E-value=3e+02 Score=23.23 Aligned_cols=41 Identities=15% Similarity=0.143 Sum_probs=29.0
Q ss_pred HHHHhHHHHHhhhhhhcCCCCCchhHH-HHHHHHHHhhhhee
Q 025710 65 LLFLYTGLALRENILRINGSDIRPWWI-YHHYCAMLMALVSL 105 (249)
Q Consensus 65 LvwyYcTLtiREsIL~vNGSrIkgWWv-~HHY~S~~lsgv~L 105 (249)
..|.|..--++|+|-.-+|.++..||. .==|++=+..++++
T Consensus 419 v~w~yg~~r~~~di~~~~~~~~~~~~~~~~~~i~Pi~l~~il 460 (509)
T d2a65a1 419 FFWIFGADKAWEEINRGGIIKVPRIYYYVMRYITPAFLAVLL 460 (509)
T ss_dssp HHTTSCHHHHHHHHHTTCSSCCCTHHHHHHHTHHHHHHHHHH
T ss_pred eeeEecHHHHHHHHHhCCCCCHHHHHHHheeeeeHhhhhhee
Confidence 469999999999999989998766554 34455544444433
No 6
>d2juza1 a.284.1.1 (A:1-72) Uncharacterized protein HI0840 {Haemophilus influenzae [TaxId: 727]}
Probab=9.95 E-value=52 Score=22.72 Aligned_cols=12 Identities=33% Similarity=0.670 Sum_probs=9.7
Q ss_pred HHHHHhHHHHHH
Q 025710 216 VLMAVGNFINTV 227 (249)
Q Consensus 216 ~il~~GNf~TT~ 227 (249)
-+|.+||.+|-+
T Consensus 33 SLMvLGN~vTni 44 (72)
T d2juza1 33 SLIALGNMASNL 44 (72)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 468899999865
No 7
>d2jrxa1 a.284.1.1 (A:1-75) Uncharacterized protein YejL {Escherichia coli [TaxId: 562]}
Probab=9.89 E-value=53 Score=22.87 Aligned_cols=13 Identities=38% Similarity=0.797 Sum_probs=10.2
Q ss_pred HHHHHHhHHHHHH
Q 025710 215 LVLMAVGNFINTV 227 (249)
Q Consensus 215 f~il~~GNf~TT~ 227 (249)
.-+|.+||.+|-+
T Consensus 32 LSLMvLGN~vTni 44 (75)
T d2jrxa1 32 LSLMVLGNMVTNL 44 (75)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 3468899999865
No 8
>d2jpqa1 a.284.1.1 (A:1-75) Hypothetical protein VP2129 {Vibrio parahaemolyticus [TaxId: 670]}
Probab=9.33 E-value=57 Score=22.69 Aligned_cols=14 Identities=43% Similarity=0.596 Sum_probs=10.5
Q ss_pred HHHHHHhHHHHHHH
Q 025710 215 LVLMAVGNFINTVQ 228 (249)
Q Consensus 215 f~il~~GNf~TT~~ 228 (249)
.-+|.+||.+|-+-
T Consensus 32 LSLMvLGN~vTnil 45 (75)
T d2jpqa1 32 LTLMIAGNIATNVL 45 (75)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 34688999998653
No 9
>d1iyjb1 a.170.1.1 (B:2403-2598) BRCA2 helical domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=7.10 E-value=2.7e+02 Score=22.12 Aligned_cols=59 Identities=19% Similarity=0.346 Sum_probs=36.4
Q ss_pred HhhhhhhcCC---CCCchhHHHHHHHHHH--hhhheeecccCCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHhhhh
Q 025710 74 LRENILRING---SDIRPWWIYHHYCAML--MALVSLTWEIKGQPNCAQKQRGVQLFLQWAMMQGVAMLLQNRYQRQ 145 (249)
Q Consensus 74 iREsIL~vNG---SrIkgWWv~HHY~S~~--lsgv~LtWp~~~~p~~~~~~~~~~qFl~fs~~qs~Vq~lQ~~YQrg 145 (249)
+++.+|-..| +-|..=||.+||-=|+ +|++-..-| ++.. ++++. .-.+.+=|.|||.|-
T Consensus 128 f~~a~l~~pGvdp~Lis~~WV~NHyrwIVWKLA~mer~~P-----~~~~-----~~~lt---~~~Vl~QL~YRYerE 191 (196)
T d1iyjb1 128 FYRALCDTPGVDPKLISSVWVSNHYRWIVWKLAAMEFAFP-----KEFA-----NRCLN---PERVLLQLKYRYDVE 191 (196)
T ss_dssp HHHHHHTSTTCCGGGCCHHHHHHHHHHHHHHHHHHHHHST-----TTTT-----TTSSS---HHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCChhhCChHHHHHHHHHHHHHHHHHHHhCc-----hhhc-----cCcCC---HHHHHHHHHHHHHHh
Confidence 4556666666 4577789999997776 444444444 3322 23333 345667889999863
No 10
>d1oedb_ f.36.1.1 (B:) Acetylcholine receptor protein, beta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=6.65 E-value=2.1e+02 Score=21.39 Aligned_cols=21 Identities=5% Similarity=0.211 Sum_probs=15.2
Q ss_pred HHHHHHhHHHHHhhhhhhcCC
Q 025710 63 AWLLFLYTGLALRENILRING 83 (249)
Q Consensus 63 ~~LvwyYcTLtiREsIL~vNG 83 (249)
+..+..-.++++=++|...|-
T Consensus 68 ~~~~~~~~~~~~~~~~~v~~~ 88 (250)
T d1oedb_ 68 LMFIMILVAFSVILSVVVLNL 88 (250)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhheee
Confidence 456667778888888886663
Done!