BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025711
(249 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q556I2|AEDO_DICDI Probable 2-aminoethanethiol dioxygenase OS=Dictyostelium discoideum
GN=ado-1 PE=3 SV=2
Length = 218
Score = 52.0 bits (123), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 28/39 (71%)
Query: 1 MGIFCLPPSGVIPLHNHPGMTVFSKLLFGTMHIKSYDWV 39
+ IF PP+ IP H+HP MTV SK+L+G++ S+DW+
Sbjct: 71 LAIFAFPPNTCIPTHDHPQMTVLSKVLYGSISCDSFDWI 109
Score = 37.4 bits (85), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 165 DGGNMHCFTA-VTACAVLDVLGPPYSDSEGRHCTYYQ 200
+ N+H F + CAVLD+L PPY + R CTYY+
Sbjct: 142 NENNIHRFQSGDEHCAVLDLLYPPYDSNFYRSCTYYR 178
>sp|Q96SZ5|AEDO_HUMAN 2-aminoethanethiol dioxygenase OS=Homo sapiens GN=ADO PE=1 SV=2
Length = 270
Score = 45.1 bits (105), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 61/143 (42%), Gaps = 10/143 (6%)
Query: 108 DVVNDNGNTSADAVDVPSKMSTDANPSETK--KPGVRLAKVKADSDLTAPCNTSILYPAD 165
D ++ G A+ + P E + +PGV ++ + ++ + PC IL P
Sbjct: 134 DKLDAGGGQRPRALPPEQQFEPPLQPREREAVRPGVLRSRAEY-TEASGPC---ILTP-H 188
Query: 166 GGNMHCFTAVTA-CAVLDVLGPPYSDSEGRHCTYYQDFPFANFSVDGASVPEEEKEGHAW 224
N+H AV A LD+L PPY +GR C YY+ +S + +E W
Sbjct: 189 RDNLHQIDAVEGPAAFLDILAPPYDPDDGRDCHYYRVLEPVRPKEASSSACDLPRE--VW 246
Query: 225 LQEGEKPKDLLVIGSFYIGPEIV 247
L E + D G Y GP++
Sbjct: 247 LLETPQADDFWCEGEPYPGPKVF 269
Score = 39.7 bits (91), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 1 MGIFCLPPSGVIPLHNHPGMTVFSKLLFGTMHIKSYD 37
+G+F L IPLH+HPGM K+L+GT+ I D
Sbjct: 98 LGVFLLKSGTSIPLHDHPGMHGMLKVLYGTVRISCMD 134
>sp|Q6PDY2|AEDO_MOUSE 2-aminoethanethiol dioxygenase OS=Mus musculus GN=Ado PE=1 SV=2
Length = 256
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 55/118 (46%), Gaps = 14/118 (11%)
Query: 134 SETKKPGVRLAKVKADSDLTAPCNTSILYPADGGNMHCFTAVTA-CAVLDVLGPPYSDSE 192
E +PGV ++ + ++ + PC +L P N+H AV A LD+L PPY +
Sbjct: 148 REAVRPGVLRSRAEY-TEASGPC---VLTPHRD-NLHQIDAVDGPAAFLDILAPPYDPED 202
Query: 193 GRHCTYYQDF-PFANFSVDGAS--VPEEEKEGHAWLQEGEKPKDLLVIGSFYIGPEIV 247
GR C YY+ P G++ +P E WL E + D G Y GP+++
Sbjct: 203 GRDCHYYRVVEPIRPKEASGSACDLPRE-----VWLLETPQADDFWCEGEPYPGPKVL 255
Score = 40.0 bits (92), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 1 MGIFCLPPSGVIPLHNHPGMTVFSKLLFGTMHIKSYD 37
+G+F L IPLH+HPGM K+L+GT+ I D
Sbjct: 86 LGVFLLKSGTCIPLHDHPGMHGMLKVLYGTVRISCMD 122
>sp|Q3SFK3|Y2653_THIDA UPF0753 protein Tbd_2653 OS=Thiobacillus denitrificans (strain ATCC
25259) GN=Tbd_2653 PE=3 SV=1
Length = 1043
Score = 37.7 bits (86), Expect = 0.075, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 4/71 (5%)
Query: 46 TSADAAGVPGKTSAVAVDA--IPGETSAAAV--DIIPGKPLAAMVDVIPGKPLAAAVDAV 101
T ADAA V A+ A IP AA V D+ PG+PL AM+D++ G + A +D +
Sbjct: 120 TLADAADVHAVLRGAALPAREIPSGALAAQVGSDMPPGRPLYAMLDLLFGTEIGATLDEL 179
Query: 102 PDKNSADVVND 112
K+ D ++
Sbjct: 180 VIKSCLDFFDE 190
>sp|A6VA71|SYA_PSEA7 Alanine--tRNA ligase OS=Pseudomonas aeruginosa (strain PA7) GN=alaS
PE=3 SV=1
Length = 874
Score = 35.0 bits (79), Expect = 0.48, Method: Composition-based stats.
Identities = 22/46 (47%), Positives = 27/46 (58%)
Query: 59 AVAVDAIPGETSAAAVDIIPGKPLAAMVDVIPGKPLAAAVDAVPDK 104
A A A + SAAAVDI K LAA +D + GK L A VD + +K
Sbjct: 750 AKAASAAGDDLSAAAVDIKGAKVLAARLDGLDGKALLALVDQLKNK 795
>sp|Q9I553|SYA_PSEAE Alanine--tRNA ligase OS=Pseudomonas aeruginosa (strain ATCC 15692 /
PAO1 / 1C / PRS 101 / LMG 12228) GN=alaS PE=3 SV=1
Length = 874
Score = 33.5 bits (75), Expect = 1.5, Method: Composition-based stats.
Identities = 21/46 (45%), Positives = 27/46 (58%)
Query: 59 AVAVDAIPGETSAAAVDIIPGKPLAAMVDVIPGKPLAAAVDAVPDK 104
A A A + SAAAV+I K LAA +D + GK L A VD + +K
Sbjct: 750 AKAASAAGDDLSAAAVEIKGAKVLAARLDGLDGKALLALVDQLKNK 795
>sp|Q02I63|SYA_PSEAB Alanine--tRNA ligase OS=Pseudomonas aeruginosa (strain UCBPP-PA14)
GN=alaS PE=3 SV=1
Length = 874
Score = 33.5 bits (75), Expect = 1.5, Method: Composition-based stats.
Identities = 21/46 (45%), Positives = 27/46 (58%)
Query: 59 AVAVDAIPGETSAAAVDIIPGKPLAAMVDVIPGKPLAAAVDAVPDK 104
A A A + SAAAV+I K LAA +D + GK L A VD + +K
Sbjct: 750 AKAASAAGDDLSAAAVEIKGAKVLAARLDGLDGKALLALVDQLKNK 795
>sp|A9KZX9|RLME_SHEB9 Ribosomal RNA large subunit methyltransferase E OS=Shewanella
baltica (strain OS195) GN=rlmE PE=3 SV=1
Length = 209
Score = 33.1 bits (74), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 49/115 (42%), Gaps = 9/115 (7%)
Query: 20 MTVFSKLLFGTMHIKSYDWVVDVPSDTSADAAGVPGKTSAVAVDAIPGETSAAAVDIIPG 79
M + S+ F I+ D ++ P T D PG S VAV A DI+P
Sbjct: 29 MGLRSRAAFKLEEIQQKDQLIR-PGMTVVDLGAAPGGWSQVAVKLAGDRGKVIACDILPM 87
Query: 80 KPLAAMVDVIPG-----KPLAAAVDAVPDKNSADVVNDNG-NTS-ADAVDVPSKM 127
P+ VD + G K L A + V D V++D N S +D+VD P M
Sbjct: 88 DPIVG-VDFLQGDFREDKVLQALLTRVGDAKVDVVLSDMAPNMSGSDSVDQPRAM 141
>sp|A6WRH7|RLME_SHEB8 Ribosomal RNA large subunit methyltransferase E OS=Shewanella
baltica (strain OS185) GN=rlmE PE=3 SV=1
Length = 209
Score = 33.1 bits (74), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 49/115 (42%), Gaps = 9/115 (7%)
Query: 20 MTVFSKLLFGTMHIKSYDWVVDVPSDTSADAAGVPGKTSAVAVDAIPGETSAAAVDIIPG 79
M + S+ F I+ D ++ P T D PG S VAV A DI+P
Sbjct: 29 MGLRSRAAFKLEEIQQKDQLIR-PGMTVVDLGAAPGGWSQVAVKLAGDRGKVIACDILPM 87
Query: 80 KPLAAMVDVIPG-----KPLAAAVDAVPDKNSADVVNDNG-NTS-ADAVDVPSKM 127
P+ VD + G K L A + V D V++D N S +D+VD P M
Sbjct: 88 DPIVG-VDFLQGDFREDKVLQALLTRVGDAKVDVVLSDMAPNMSGSDSVDQPRAM 141
>sp|A3D7L4|RLME_SHEB5 Ribosomal RNA large subunit methyltransferase E OS=Shewanella
baltica (strain OS155 / ATCC BAA-1091) GN=rlmE PE=3 SV=1
Length = 209
Score = 33.1 bits (74), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 49/115 (42%), Gaps = 9/115 (7%)
Query: 20 MTVFSKLLFGTMHIKSYDWVVDVPSDTSADAAGVPGKTSAVAVDAIPGETSAAAVDIIPG 79
M + S+ F I+ D ++ P T D PG S VAV A DI+P
Sbjct: 29 MGLRSRAAFKLEEIQQKDQLIR-PGMTVVDLGAAPGGWSQVAVKLAGDRGKVIACDILPM 87
Query: 80 KPLAAMVDVIPG-----KPLAAAVDAVPDKNSADVVNDNG-NTS-ADAVDVPSKM 127
P+ VD + G K L A + V D V++D N S +D+VD P M
Sbjct: 88 DPIVG-VDFLQGDFREDKVLQALLTRVGDAKVDVVLSDMAPNMSGSDSVDQPRAM 141
>sp|B8E6M4|RLME_SHEB2 Ribosomal RNA large subunit methyltransferase E OS=Shewanella
baltica (strain OS223) GN=rlmE PE=3 SV=1
Length = 209
Score = 33.1 bits (74), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 49/115 (42%), Gaps = 9/115 (7%)
Query: 20 MTVFSKLLFGTMHIKSYDWVVDVPSDTSADAAGVPGKTSAVAVDAIPGETSAAAVDIIPG 79
M + S+ F I+ D ++ P T D PG S VAV A DI+P
Sbjct: 29 MGLRSRAAFKLEEIQQKDQLIR-PGMTVVDLGAAPGGWSQVAVKLAGDRGKVIACDILPM 87
Query: 80 KPLAAMVDVIPG-----KPLAAAVDAVPDKNSADVVNDNG-NTS-ADAVDVPSKM 127
P+ VD + G K L A + V D V++D N S +D+VD P M
Sbjct: 88 DPIVG-VDFLQGDFREDKVLQALLTRVGDAKVDVVLSDMAPNMSGSDSVDQPRAM 141
>sp|A1JIW2|RLME_YERE8 Ribosomal RNA large subunit methyltransferase E OS=Yersinia
enterocolitica serotype O:8 / biotype 1B (strain 8081)
GN=rlmE PE=3 SV=1
Length = 209
Score = 32.7 bits (73), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 39/92 (42%), Gaps = 8/92 (8%)
Query: 43 PSDTSADAAGVPGKTSAVAVDAIPGETSAAAVDIIPGKPLAAMVDVIPGK-----PLAAA 97
P T D PG S V I G+ A D++P P+ VD + G L A
Sbjct: 51 PGMTVVDLGAAPGGWSQYVVTQIGGKGRVIACDLLPMDPIVG-VDFLQGDFRDELVLKAL 109
Query: 98 VDAVPDKNSADVVNDNG-NTSAD-AVDVPSKM 127
++ V DK V+ D N S AVD+P M
Sbjct: 110 LERVGDKKVQVVMCDMAPNMSGTPAVDIPKSM 141
>sp|Q6D9B9|RLME_ERWCT Ribosomal RNA large subunit methyltransferase E OS=Erwinia
carotovora subsp. atroseptica (strain SCRI 1043 / ATCC
BAA-672) GN=rlmE PE=3 SV=1
Length = 209
Score = 32.3 bits (72), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 39/92 (42%), Gaps = 8/92 (8%)
Query: 43 PSDTSADAAGVPGKTSAVAVDAIPGETSAAAVDIIPGKPLAAMVDVIPGK-----PLAAA 97
P T D PG S V I G+ A DI+P P+ VD + G L A
Sbjct: 51 PGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDILPMDPIVG-VDFLQGDFRDELVLKAL 109
Query: 98 VDAVPDKNSADVVNDNG-NTSAD-AVDVPSKM 127
++ V D V++D N S AVD+P M
Sbjct: 110 LERVGDSKVQVVMSDMAPNMSGTPAVDIPKSM 141
>sp|P64734|Y901_MYCBO Uncharacterized protein Mb0901 OS=Mycobacterium bovis (strain ATCC
BAA-935 / AF2122/97) GN=Mb0901 PE=4 SV=1
Length = 262
Score = 31.6 bits (70), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 11/85 (12%)
Query: 34 KSYDWVVDVPSDTSADAAG------VPGKTSAVAVDAIPGETSAAAVDIIPGKPLAAMVD 87
+ + W V V S + AD A VPG T+ +A D +P E D+ PG LA D
Sbjct: 70 QGWQWAVVVASYSGADHATISEVVLVPGPTALLAPDWVPWEQRVRPGDLSPGDLLAPAKD 129
Query: 88 ---VIPGKPLAAAVDAVPDKNSADV 109
++PG A+ DA D+ +A++
Sbjct: 130 DPRLVPG--YTASGDAQVDETAAEI 152
>sp|P64733|Y877_MYCTU Uncharacterized protein Rv0877/MT0900 OS=Mycobacterium tuberculosis
GN=Rv0877 PE=4 SV=1
Length = 262
Score = 31.6 bits (70), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 11/85 (12%)
Query: 34 KSYDWVVDVPSDTSADAAG------VPGKTSAVAVDAIPGETSAAAVDIIPGKPLAAMVD 87
+ + W V V S + AD A VPG T+ +A D +P E D+ PG LA D
Sbjct: 70 QGWQWAVVVASYSGADHATISEVVLVPGPTALLAPDWVPWEQRVRPGDLSPGDLLAPAKD 129
Query: 88 ---VIPGKPLAAAVDAVPDKNSADV 109
++PG A+ DA D+ +A++
Sbjct: 130 DPRLVPG--YTASGDAQVDETAAEI 152
>sp|A4WEZ0|RLME_ENT38 Ribosomal RNA large subunit methyltransferase E OS=Enterobacter sp.
(strain 638) GN=rlmE PE=3 SV=1
Length = 208
Score = 31.6 bits (70), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 38/92 (41%), Gaps = 8/92 (8%)
Query: 43 PSDTSADAAGVPGKTSAVAVDAIPGETSAAAVDIIPGKPLAAMVDVIPGK-----PLAAA 97
P T D PG S AV I G+ A D++P P+ VD + G L A
Sbjct: 51 PGMTIVDLGAAPGGWSQYAVTQIGGQGRIIACDLLPMDPIVG-VDFLQGDFRDELVLKAL 109
Query: 98 VDAVPDKNSADVVNDNG--NTSADAVDVPSKM 127
++ V D V++D AVD+P M
Sbjct: 110 LERVGDSKVQVVMSDMAPNMCGTPAVDIPRSM 141
>sp|C6DKI3|RLME_PECCP Ribosomal RNA large subunit methyltransferase E OS=Pectobacterium
carotovorum subsp. carotovorum (strain PC1) GN=rlmE PE=3
SV=1
Length = 209
Score = 31.6 bits (70), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 38/92 (41%), Gaps = 8/92 (8%)
Query: 43 PSDTSADAAGVPGKTSAVAVDAIPGETSAAAVDIIPGKPLAAMVDVIPGK-----PLAAA 97
P T D PG S V I G A DI+P P+ VD + G L A
Sbjct: 51 PGMTVVDLGAAPGGWSQYVVTQIGGNGRIIACDILPMDPIVG-VDFLQGDFRDELVLKAL 109
Query: 98 VDAVPDKNSADVVNDNG-NTSAD-AVDVPSKM 127
++ V D V++D N S AVD+P M
Sbjct: 110 LERVGDSKVQVVMSDMAPNMSGTPAVDIPKSM 141
>sp|Q8KBY0|ACSA_CHLTE Acetyl-coenzyme A synthetase OS=Chlorobium tepidum (strain ATCC
49652 / DSM 12025 / TLS) GN=acsA PE=3 SV=2
Length = 659
Score = 31.6 bits (70), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 45/102 (44%), Gaps = 20/102 (19%)
Query: 124 PSKMSTDANPSETKKPGVRLAKVKADSDLTAPCNTSILYPADGGNMHCFTAVTACAVLDV 183
P+K T P PG+ + V+ D PCN + +GG + V +
Sbjct: 443 PTKPGTATRPL----PGIMVDVVRKDG---TPCNAN-----EGGYL-----VVKRPWPSM 485
Query: 184 LGPPYSDSEGRHCTYYQDFPFANFSVDGASVPEEEKEGHAWL 225
L Y D+E TY+ +FP F+ DGA ++ +G+ W+
Sbjct: 486 LRTIYGDNERYEKTYWSEFPGMYFTGDGA---RKDDDGYIWI 524
>sp|Q2NW30|RLME_SODGM Ribosomal RNA large subunit methyltransferase E OS=Sodalis
glossinidius (strain morsitans) GN=rlmE PE=3 SV=1
Length = 209
Score = 31.6 bits (70), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 41/92 (44%), Gaps = 8/92 (8%)
Query: 43 PSDTSADAAGVPGKTSAVAVDAIPGETSAAAVDIIPGKPLAAMVDVIPG---KPLA--AA 97
P T D PG S I G+ A DI+P P+ VD + G +PL A
Sbjct: 51 PGMTVVDLGAAPGGWSQYVATQIGGKGRIIACDILPMDPMVG-VDFLQGDFREPLVLQAL 109
Query: 98 VDAVPDKNSADVVNDNG-NTSAD-AVDVPSKM 127
++ V ++ VV+D N S AVD+P M
Sbjct: 110 LERVGEQKVQVVVSDMAPNMSGTPAVDIPKSM 141
>sp|Q5E7M3|RLME_VIBF1 Ribosomal RNA large subunit methyltransferase E OS=Vibrio fischeri
(strain ATCC 700601 / ES114) GN=rlmE PE=3 SV=1
Length = 209
Score = 31.2 bits (69), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 50/114 (43%), Gaps = 15/114 (13%)
Query: 24 SKLLFGTMHIKSYDWVVDVPSDTSADAAGVPGKTSAVAVDAIPGETSAAAVDIIPGKPLA 83
S+ +F I++ D ++ P T D PG S AV+ + E A DI+P +A
Sbjct: 33 SRAIFKIEEIQNKDKLLK-PGMTVVDLGAAPGGWSQYAVEQVGDEGQVIACDILPMDSIA 91
Query: 84 AMVDVIPGKPLAAAV-DAVPDKNSADVV---------NDNGNTSADAVDVPSKM 127
V + G AV DA+ ++ D+V N +GN AVD P M
Sbjct: 92 G-VSFLQGDFREEAVLDALLERIQPDMVDVVMSDMAPNMSGNL---AVDQPRAM 141
>sp|A1S454|RLME_SHEAM Ribosomal RNA large subunit methyltransferase E OS=Shewanella
amazonensis (strain ATCC BAA-1098 / SB2B) GN=rlmE PE=3
SV=1
Length = 209
Score = 31.2 bits (69), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 52/123 (42%), Gaps = 11/123 (8%)
Query: 12 IPLHNHPGMTVFSKLLFGTMHIKSYDWVVDVPSDTSADAAGVPGKTSAVAVDAIPGETSA 71
+ L G+ S+ F ++ D ++ P T D PG S VAV +
Sbjct: 23 VKLAQKRGLR--SRAAFKLEELQEKDHLIK-PGMTVVDLGAAPGGWSQVAVKLVGDRGKV 79
Query: 72 AAVDIIPGKPLAAMVDVIPG-----KPLAAAVDAVPDKNSADVVNDNG-NTS-ADAVDVP 124
A DI+P P+ VD + G L A ++ V D+ V++D N S +D VD P
Sbjct: 80 IACDILPMDPIVG-VDFLQGDFREDAVLNALLERVGDEKVDVVLSDMAPNMSGSDGVDQP 138
Query: 125 SKM 127
M
Sbjct: 139 RAM 141
>sp|A4XWE2|SYA_PSEMY Alanine--tRNA ligase OS=Pseudomonas mendocina (strain ymp) GN=alaS
PE=3 SV=2
Length = 874
Score = 30.8 bits (68), Expect = 8.5, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 29/52 (55%)
Query: 59 AVAVDAIPGETSAAAVDIIPGKPLAAMVDVIPGKPLAAAVDAVPDKNSADVV 110
A A A + + +AVD+ K LAA +D + GK L A VD + +K + V+
Sbjct: 750 AKAASAAGNDLAGSAVDLKGTKVLAARLDGLDGKALLALVDQLKNKLGSGVI 801
>sp|Q820A2|RLME_NITEU Ribosomal RNA large subunit methyltransferase E OS=Nitrosomonas
europaea (strain ATCC 19718 / NBRC 14298) GN=rlmE PE=3
SV=1
Length = 206
Score = 30.8 bits (68), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 45/101 (44%), Gaps = 7/101 (6%)
Query: 16 NHPGMTVFSKLLFGTMHIKSYDWVVDVPSDTSADAAGVPGKTSAVAVDAIPGETSAAAVD 75
NH G S+ + I +D + VP T D VPG S VA++++ A+D
Sbjct: 24 NHEGYR--SRAAYKLREIAEHDALF-VPGMTVVDLGAVPGSWSQVALESVGPTGKVFALD 80
Query: 76 IIPGKPLAAMV----DVIPGKPLAAAVDAVPDKNSADVVND 112
++ +PL M D + LA A+ K + V++D
Sbjct: 81 MLDMQPLPGMTFIQGDFRENEVLAMLEAALGGKRADLVISD 121
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.133 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 102,762,314
Number of Sequences: 539616
Number of extensions: 4512401
Number of successful extensions: 9329
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 102
Number of HSP's that attempted gapping in prelim test: 9237
Number of HSP's gapped (non-prelim): 160
length of query: 249
length of database: 191,569,459
effective HSP length: 115
effective length of query: 134
effective length of database: 129,513,619
effective search space: 17354824946
effective search space used: 17354824946
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 60 (27.7 bits)