Query 025711
Match_columns 249
No_of_seqs 118 out of 192
Neff 3.1
Searched_HMMs 46136
Date Fri Mar 29 08:43:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025711.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025711hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4281 Uncharacterized conser 100.0 5.5E-60 1.2E-64 418.4 11.7 159 1-247 77-235 (236)
2 PF07847 DUF1637: Protein of u 100.0 2.2E-59 4.8E-64 406.2 14.2 154 1-246 46-200 (200)
3 PF05995 CDO_I: Cysteine dioxy 97.6 0.00017 3.7E-09 61.2 7.3 39 3-41 79-117 (175)
4 PF07883 Cupin_2: Cupin domain 94.5 0.017 3.7E-07 39.9 1.2 33 2-34 1-33 (71)
5 COG1917 Uncharacterized conser 93.9 0.065 1.4E-06 42.3 3.3 33 2-34 46-78 (131)
6 PRK13290 ectC L-ectoine syntha 93.4 0.5 1.1E-05 38.6 7.8 31 4-35 40-70 (125)
7 TIGR03404 bicupin_oxalic bicup 89.9 0.35 7.7E-06 46.0 3.8 37 1-37 247-283 (367)
8 TIGR02451 anti_sig_ChrR anti-s 82.9 1.2 2.6E-05 39.3 3.1 29 2-31 130-158 (215)
9 KOG4064 Cysteine dioxygenase C 79.9 2.3 4.9E-05 38.0 3.7 39 3-41 76-114 (196)
10 smart00835 Cupin_1 Cupin. This 78.8 2.4 5.1E-05 34.3 3.3 34 2-35 33-66 (146)
11 PF12973 Cupin_7: ChrR Cupin-l 72.8 1.6 3.5E-05 32.8 0.8 29 3-32 28-56 (91)
12 COG0662 {ManC} Mannose-6-phosp 69.7 29 0.00063 27.8 7.4 33 2-34 39-71 (127)
13 TIGR01479 GMP_PMI mannose-1-ph 69.1 27 0.00058 34.1 8.3 33 2-34 379-411 (468)
14 TIGR03404 bicupin_oxalic bicup 65.3 8.9 0.00019 36.7 4.2 34 3-37 71-104 (367)
15 TIGR03214 ura-cupin putative a 54.8 13 0.00029 33.5 3.3 33 1-34 181-214 (260)
16 PRK15460 cpsB mannose-1-phosph 49.2 1E+02 0.0022 30.8 8.7 42 157-200 431-476 (478)
17 TIGR01221 rmlC dTDP-4-dehydror 47.6 1.7E+02 0.0037 25.5 8.8 47 151-199 99-146 (176)
18 PRK11171 hypothetical protein; 35.4 43 0.00094 30.3 3.5 33 2-34 187-219 (266)
19 COG5553 Predicted metal-depend 31.1 34 0.00074 30.9 2.0 33 4-37 78-110 (191)
20 PF00190 Cupin_1: Cupin; Inte 29.5 35 0.00076 27.5 1.7 33 4-37 39-71 (144)
21 PF11142 DUF2917: Protein of u 28.9 55 0.0012 24.0 2.5 32 3-36 1-32 (63)
22 PF05523 FdtA: WxcM-like, C-te 27.7 93 0.002 25.4 3.9 33 6-38 40-72 (131)
23 COG1898 RfbC dTDP-4-dehydrorha 23.3 3.6E+02 0.0077 23.9 6.9 39 151-191 99-138 (173)
24 PRK12335 tellurite resistance 20.3 71 0.0015 28.7 2.0 29 9-37 21-50 (287)
No 1
>KOG4281 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=5.5e-60 Score=418.41 Aligned_cols=159 Identities=58% Similarity=1.068 Sum_probs=146.3
Q ss_pred CceeecCCCCcccCCCCCCCeeeeeeeecceEEEEeecccCCCCCCcccccCCCCccccceeccCCCccccccccccCCC
Q 025711 1 MGIFCLPPSGVIPLHNHPGMTVFSKLLFGTMHIKSYDWVVDVPSDTSADAAGVPGKTSAVAVDAIPGETSAAAVDIIPGK 80 (249)
Q Consensus 1 mgIF~Lp~g~~IPLHDHPgMtvlsKvLyGsl~v~SYd~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (249)
|||||||+|++|||||||||+||||+|||+|||+||||+++.+.++. .
T Consensus 77 igiFclp~ss~IPLHdHPgM~v~sKllyGtmhVksyDw~ePd~~~~~--------------------------------d 124 (236)
T KOG4281|consen 77 IGIFCLPPSSVIPLHDHPGMTVLSKLLYGTMHVKSYDWVEPDEPQTE--------------------------------D 124 (236)
T ss_pred EEEEEcCCCCeeecCCCcchHHHHHhhhceeEeeeccccCCCCcccC--------------------------------C
Confidence 79999999999999999999999999999999999999986544332 0
Q ss_pred CccccccccCCCccccccccCCCCCCCccccCCCCCCCcccccCCCCCCCCCCCCCCCCCeeEEEEeecceecCCCCeeE
Q 025711 81 PLAAMVDVIPGKPLAAAVDAVPDKNSADVVNDNGNTSADAVDVPSKMSTDANPSETKKPGVRLAKVKADSDLTAPCNTSI 160 (249)
Q Consensus 81 ~~~~~~~~~~~~p~~~~~~~~~~kn~~~~~~~~~~~~~~~v~v~~k~~~~~~ps~~~~~~~rlAk~~~d~~~ta~c~t~v 160 (249)
| ...+|+||++.|.++|++|.+++
T Consensus 125 p--------------------------------------------------------~q~~r~akl~~d~~~T~~s~~~~ 148 (236)
T KOG4281|consen 125 P--------------------------------------------------------HQPVRPAKLVSDKEFTAASPAST 148 (236)
T ss_pred C--------------------------------------------------------CcceeeeeEeccceecCCCCCcE
Confidence 0 01379999999999999999999
Q ss_pred eecCCCCCeeEeeecCceeEeEeeCCCCCCCCCCCCccccccCCCCccCCCCCCCccccCceeEEEeeCCCCCeEEecee
Q 025711 161 LYPADGGNMHCFTAVTACAVLDVLGPPYSDSEGRHCTYYQDFPFANFSVDGASVPEEEKEGHAWLQEGEKPKDLLVIGSF 240 (249)
Q Consensus 161 L~P~~ggNlH~ftAv~pcAfLDIL~PPY~~~~gR~CtYY~~~p~~~~~~~~~~~~~~~~~~~~wL~ei~~P~df~~~~~~ 240 (249)
|||++|||+|+|+|+++|||||||+|||+.+.||+|+||++.++..++.+...++++++++++||+|+.+|+||||.++.
T Consensus 149 LyP~~ggn~h~f~a~t~cAvlDILsPPY~~~~gR~C~Yyr~~p~~~~~~~~~~s~~~~~~~~~wL~E~~~~D~f~~~~~~ 228 (236)
T KOG4281|consen 149 LYPKTGGNHHCFTAITPCAVLDILSPPYDSDHGRHCTYYRDYPFSSLSGDCVVSSEEEKEDVAWLEERQPPDDFVCRGEP 228 (236)
T ss_pred eeecCCCcEeeeeeccceeEEeeccCCCCCCCCcCceEEeccCccccCCceeecCccccccceeeeccCCcccceEeccc
Confidence 99999999999999999999999999999999999999999999998866777788999999999999999999999999
Q ss_pred cCCCccc
Q 025711 241 YIGPEIV 247 (249)
Q Consensus 241 Y~GP~i~ 247 (249)
|+||.|.
T Consensus 229 Y~gp~i~ 235 (236)
T KOG4281|consen 229 YRGPKIR 235 (236)
T ss_pred cCCCccC
Confidence 9999986
No 2
>PF07847 DUF1637: Protein of unknown function (DUF1637); InterPro: IPR012864 This entry represents cysteamine dioxygenase, which is a non-heme iron protein that is involved in the biosynthesis of taurine. Requires catalytic amounts of a cofactor-like compound, such as sulphur, sulphide, selenium or methylene blue for maximal activity. 3-Aminopropanethiol (homocysteamine) and 2-mercaptoethanol can also act as substrates, but glutathione, cysteine, and cysteine ethyl- and methyl esters are not good substrates [, ]. ; GO: 0047800 cysteamine dioxygenase activity, 0055114 oxidation-reduction process
Probab=100.00 E-value=2.2e-59 Score=406.23 Aligned_cols=154 Identities=49% Similarity=0.999 Sum_probs=135.2
Q ss_pred CceeecCCCCcccCCCCCCCeeeeeeeecceEEEEeecccCCCCCCcccccCCCCccccceeccCCCccccccccccCCC
Q 025711 1 MGIFCLPPSGVIPLHNHPGMTVFSKLLFGTMHIKSYDWVVDVPSDTSADAAGVPGKTSAVAVDAIPGETSAAAVDIIPGK 80 (249)
Q Consensus 1 mgIF~Lp~g~~IPLHDHPgMtvlsKvLyGsl~v~SYd~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (249)
|||||||+|++||||||||||||||||||++||+||||+++......
T Consensus 46 i~iF~lp~g~~IPLHDHP~M~v~sKvL~Gs~~v~Syd~~~~~~~~~~--------------------------------- 92 (200)
T PF07847_consen 46 IGIFCLPPGAVIPLHDHPGMTVLSKVLYGSLHVKSYDWVDEPSDSIE--------------------------------- 92 (200)
T ss_pred EEEEEeCCCCEeCCCCCCchHhhHhhEeeeEEEEEcccccccccccc---------------------------------
Confidence 79999999999999999999999999999999999999984221110
Q ss_pred CccccccccCCCccccccccCCCCCCCccccCCCCCCCcccccCCCCCCCCCCCCCCCCCeeEEEEeecceecCCCCeeE
Q 025711 81 PLAAMVDVIPGKPLAAAVDAVPDKNSADVVNDNGNTSADAVDVPSKMSTDANPSETKKPGVRLAKVKADSDLTAPCNTSI 160 (249)
Q Consensus 81 ~~~~~~~~~~~~p~~~~~~~~~~kn~~~~~~~~~~~~~~~v~v~~k~~~~~~ps~~~~~~~rlAk~~~d~~~ta~c~t~v 160 (249)
.....++|+++.|.+++++|++++
T Consensus 93 --------------------------------------------------------~~~~~~~a~~~~d~~~~a~~~~~v 116 (200)
T PF07847_consen 93 --------------------------------------------------------GQRQPRLARLVVDGEMTAPSDTCV 116 (200)
T ss_pred --------------------------------------------------------ccccceeeEEEecceecCCCCCeE
Confidence 012378999999999999999999
Q ss_pred eecCCCCCeeEeeecC-ceeEeEeeCCCCCCCCCCCCccccccCCCCccCCCCCCCccccCceeEEEeeCCCCCeEEece
Q 025711 161 LYPADGGNMHCFTAVT-ACAVLDVLGPPYSDSEGRHCTYYQDFPFANFSVDGASVPEEEKEGHAWLQEGEKPKDLLVIGS 239 (249)
Q Consensus 161 L~P~~ggNlH~ftAv~-pcAfLDIL~PPY~~~~gR~CtYY~~~p~~~~~~~~~~~~~~~~~~~~wL~ei~~P~df~~~~~ 239 (249)
|||++|||||+|+|++ ||||||||+|||+.+.||+|+||++++....+ ....+.+.++.+||+||++|+||||+++
T Consensus 117 L~P~~ggNiH~f~a~~~p~AflDIL~PPY~~~~gR~C~YY~~~~~~~~~---~~~~~~~~~~~~~L~ei~~P~df~~~~~ 193 (200)
T PF07847_consen 117 LYPTSGGNIHEFTALTGPCAFLDILAPPYDPDDGRDCTYYRPVPFSSSS---EQLPSEQDEQYVWLEEIPPPDDFYCDSG 193 (200)
T ss_pred EccCCCCeeEEEEeCCCCeEEEEEccCCCCCCCCCCcEEEeecCCcccc---cccccccCCCeEEEEEcCCCCCEEEeee
Confidence 9999889999999999 99999999999999999999999999876543 2233445568999999999999999999
Q ss_pred ecCCCcc
Q 025711 240 FYIGPEI 246 (249)
Q Consensus 240 ~Y~GP~i 246 (249)
+|+||+|
T Consensus 194 ~Y~GP~v 200 (200)
T PF07847_consen 194 PYRGPPV 200 (200)
T ss_pred eeCCCCC
Confidence 9999986
No 3
>PF05995 CDO_I: Cysteine dioxygenase type I; InterPro: IPR010300 Cysteine dioxygenase type I (1.13.11.20 from EC) converts cysteine to cysteinesulphinic acid and is the rate-limiting step in sulphate production.; GO: 0005506 iron ion binding, 0017172 cysteine dioxygenase activity, 0046439 L-cysteine metabolic process, 0055114 oxidation-reduction process; PDB: 2IC1_A 3EQE_B 3ELN_A 2B5H_A 2GH2_A 2Q4S_A 2ATF_A 2GM6_A 3USS_B.
Probab=97.65 E-value=0.00017 Score=61.19 Aligned_cols=39 Identities=31% Similarity=0.594 Sum_probs=31.7
Q ss_pred eeecCCCCcccCCCCCCCeeeeeeeecceEEEEeecccC
Q 025711 3 IFCLPPSGVIPLHNHPGMTVFSKLLFGTMHIKSYDWVVD 41 (249)
Q Consensus 3 IF~Lp~g~~IPLHDHPgMtvlsKvLyGsl~v~SYd~v~~ 41 (249)
++|.++|..-|+|||.|..++.+||.|.++-+-|.|.+.
T Consensus 79 ll~W~pGq~S~IHDH~~s~g~~~vl~G~l~e~~y~~~~~ 117 (175)
T PF05995_consen 79 LLCWPPGQRSPIHDHGGSWGWVKVLSGELEETRYRRPDD 117 (175)
T ss_dssp EEEE-TT-B--EEE-TTSEEEEEEEESEEEEEEEEESTS
T ss_pred EEEeCCCCcCCCCCCCCceEEEEEecceEEEEEeccCCc
Confidence 688999999999999999999999999999999998754
No 4
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=94.55 E-value=0.017 Score=39.93 Aligned_cols=33 Identities=42% Similarity=0.776 Sum_probs=30.9
Q ss_pred ceeecCCCCcccCCCCCCCeeeeeeeecceEEE
Q 025711 2 GIFCLPPSGVIPLHNHPGMTVFSKLLFGTMHIK 34 (249)
Q Consensus 2 gIF~Lp~g~~IPLHDHPgMtvlsKvLyGsl~v~ 34 (249)
|++-|++|+.+|.|-|++...+.-||.|++.+.
T Consensus 1 ~~~~~~pG~~~~~h~H~~~~e~~~vl~G~~~~~ 33 (71)
T PF07883_consen 1 GLVTLPPGGSIPPHRHPGEDEFFYVLSGEGTLT 33 (71)
T ss_dssp EEEEEETTEEEEEEEESSEEEEEEEEESEEEEE
T ss_pred CEEEECCCCCCCCEECCCCCEEEEEEECCEEEE
Confidence 577899999999999999999999999999987
No 5
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=93.87 E-value=0.065 Score=42.26 Aligned_cols=33 Identities=27% Similarity=0.376 Sum_probs=29.8
Q ss_pred ceeecCCCCcccCCCCCCCeeeeeeeecceEEE
Q 025711 2 GIFCLPPSGVIPLHNHPGMTVFSKLLFGTMHIK 34 (249)
Q Consensus 2 gIF~Lp~g~~IPLHDHPgMtvlsKvLyGsl~v~ 34 (249)
..|.+.+|+++|.|.||......=||-|.+.+.
T Consensus 46 ~~v~~~~G~~~~~H~hp~~~~~~~Vl~G~~~~~ 78 (131)
T COG1917 46 VLVTFEPGAVIPWHTHPLGEQTIYVLEGEGTVQ 78 (131)
T ss_pred EEEEECCCcccccccCCCcceEEEEEecEEEEE
Confidence 578999999999999998888999999999864
No 6
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=93.38 E-value=0.5 Score=38.65 Aligned_cols=31 Identities=10% Similarity=0.013 Sum_probs=26.9
Q ss_pred eecCCCCcccCCCCCCCeeeeeeeecceEEEE
Q 025711 4 FCLPPSGVIPLHNHPGMTVFSKLLFGTMHIKS 35 (249)
Q Consensus 4 F~Lp~g~~IPLHDHPgMtvlsKvLyGsl~v~S 35 (249)
|.|++|+.+|.|-|... -+.-||-|++.+.-
T Consensus 40 ~~l~pG~~~~~h~h~~~-E~~yVL~G~~~~~~ 70 (125)
T PRK13290 40 TTIYAGTETHLHYKNHL-EAVYCIEGEGEVED 70 (125)
T ss_pred EEECCCCcccceeCCCE-EEEEEEeCEEEEEE
Confidence 57899999999999876 49999999999763
No 7
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=89.91 E-value=0.35 Score=45.97 Aligned_cols=37 Identities=19% Similarity=0.420 Sum_probs=33.7
Q ss_pred CceeecCCCCcccCCCCCCCeeeeeeeecceEEEEee
Q 025711 1 MGIFCLPPSGVIPLHNHPGMTVFSKLLFGTMHIKSYD 37 (249)
Q Consensus 1 mgIF~Lp~g~~IPLHDHPgMtvlsKvLyGsl~v~SYd 37 (249)
|+.+.|++|+.+++|.||+..=+.-||.|+++++.+|
T Consensus 247 ~~~~~l~PG~~~~~H~H~~~~E~~yvl~G~~~~~v~d 283 (367)
T TIGR03404 247 AAIVTVEPGAMRELHWHPNADEWQYFIQGQARMTVFA 283 (367)
T ss_pred EEEEEECCCCccCCeeCcCCCeEEEEEEEEEEEEEEe
Confidence 3578899999999999999999999999999998775
No 8
>TIGR02451 anti_sig_ChrR anti-sigma factor, putative, ChrR family. The member of this family from Rhodobacter sphaeroides has been shown both to form a complex with sigma(E) and to negatively regulate tetrapyrrole biosynthesis. This protein likely contains (at least) two distinct functional domains; several smaller homologs (excluded by the model) show homology only to the C-terminal, including a motif PxHxHxGxE.
Probab=82.89 E-value=1.2 Score=39.29 Aligned_cols=29 Identities=24% Similarity=0.578 Sum_probs=26.0
Q ss_pred ceeecCCCCcccCCCCCCCeeeeeeeecce
Q 025711 2 GIFCLPPSGVIPLHNHPGMTVFSKLLFGTM 31 (249)
Q Consensus 2 gIF~Lp~g~~IPLHDHPgMtvlsKvLyGsl 31 (249)
.++.+++|+.+|.|.|.|.- +.-||.|++
T Consensus 130 ~Ll~i~pG~~~p~H~H~G~E-~tlVLeG~f 158 (215)
T TIGR02451 130 RLLYIEAGQSIPQHTHKGFE-LTLVLHGAF 158 (215)
T ss_pred EEEEECCCCccCCCcCCCcE-EEEEEEEEE
Confidence 46779999999999999998 778999996
No 9
>KOG4064 consensus Cysteine dioxygenase CDO1 [Amino acid transport and metabolism]
Probab=79.90 E-value=2.3 Score=38.01 Aligned_cols=39 Identities=26% Similarity=0.498 Sum_probs=35.0
Q ss_pred eeecCCCCcccCCCCCCCeeeeeeeecceEEEEeecccC
Q 025711 3 IFCLPPSGVIPLHNHPGMTVFSKLLFGTMHIKSYDWVVD 41 (249)
Q Consensus 3 IF~Lp~g~~IPLHDHPgMtvlsKvLyGsl~v~SYd~v~~ 41 (249)
|.|--+|----.|||-+-+-|.|+|.|.++=+-|.|-|.
T Consensus 76 ILCWGeGhgSSvHDHtdsHCF~KmL~G~L~Et~yawPd~ 114 (196)
T KOG4064|consen 76 ILCWGEGHGSSVHDHTDSHCFVKMLDGELTETKYAWPDR 114 (196)
T ss_pred EEEecCCCCccccccccchhHHHHhcCcchhhcccCCCc
Confidence 677778877889999999999999999999999999754
No 10
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=78.80 E-value=2.4 Score=34.28 Aligned_cols=34 Identities=26% Similarity=0.433 Sum_probs=29.6
Q ss_pred ceeecCCCCcccCCCCCCCeeeeeeeecceEEEE
Q 025711 2 GIFCLPPSGVIPLHNHPGMTVFSKLLFGTMHIKS 35 (249)
Q Consensus 2 gIF~Lp~g~~IPLHDHPgMtvlsKvLyGsl~v~S 35 (249)
..+.+++|+..+.|-||+..-+.-||.|++.+..
T Consensus 33 ~~~~i~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~ 66 (146)
T smart00835 33 ARVNLEPGGMLPPHYHPRATELLYVVRGEGRVGV 66 (146)
T ss_pred EEEEecCCcCcCCeeCCCCCEEEEEEeCeEEEEE
Confidence 4567999999999999987788899999999873
No 11
>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A.
Probab=72.75 E-value=1.6 Score=32.78 Aligned_cols=29 Identities=31% Similarity=0.606 Sum_probs=22.4
Q ss_pred eeecCCCCcccCCCCCCCeeeeeeeecceE
Q 025711 3 IFCLPPSGVIPLHNHPGMTVFSKLLFGTMH 32 (249)
Q Consensus 3 IF~Lp~g~~IPLHDHPgMtvlsKvLyGsl~ 32 (249)
+.-+.+|+++|.|.|++-.-+ =||-|++.
T Consensus 28 L~r~~pG~~~p~H~H~g~ee~-~VLeG~~~ 56 (91)
T PF12973_consen 28 LLRLEPGASLPRHRHPGGEEI-LVLEGELS 56 (91)
T ss_dssp EEEE-TTEEEEEEEESS-EEE-EEEECEEE
T ss_pred EEEECCCCCcCccCCCCcEEE-EEEEEEEE
Confidence 455899999999999995544 68999887
No 12
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=69.69 E-value=29 Score=27.77 Aligned_cols=33 Identities=24% Similarity=0.258 Sum_probs=27.8
Q ss_pred ceeecCCCCcccCCCCCCCeeeeeeeecceEEE
Q 025711 2 GIFCLPPSGVIPLHNHPGMTVFSKLLFGTMHIK 34 (249)
Q Consensus 2 gIF~Lp~g~~IPLHDHPgMtvlsKvLyGsl~v~ 34 (249)
..+.+++|..+.||-|..=--+.-||.|...|.
T Consensus 39 ~~~~v~pg~~~~~~~H~~~dE~~~Vl~G~g~v~ 71 (127)
T COG0662 39 ARILVKPGEEISLHHHHHRDEHWYVLEGTGKVT 71 (127)
T ss_pred EEEEECCCcccCcccccCcceEEEEEeeEEEEE
Confidence 467889999999999999778888888888764
No 13
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=69.07 E-value=27 Score=34.07 Aligned_cols=33 Identities=15% Similarity=0.183 Sum_probs=25.9
Q ss_pred ceeecCCCCcccCCCCCCCeeeeeeeecceEEE
Q 025711 2 GIFCLPPSGVIPLHNHPGMTVFSKLLFGTMHIK 34 (249)
Q Consensus 2 gIF~Lp~g~~IPLHDHPgMtvlsKvLyGsl~v~ 34 (249)
.++.++||+.+++|-|+.=.-..-||.|++.+.
T Consensus 379 ~~~~i~PG~~~~~h~H~~~~E~~~Vl~G~~~v~ 411 (468)
T TIGR01479 379 KRITVKPGEKLSLQMHHHRAEHWIVVSGTARVT 411 (468)
T ss_pred EEEEECCCCccCccccCCCceEEEEEeeEEEEE
Confidence 357899999999888875554457999999875
No 14
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=65.25 E-value=8.9 Score=36.65 Aligned_cols=34 Identities=26% Similarity=0.482 Sum_probs=29.6
Q ss_pred eeecCCCCcccCCCCCCCeeeeeeeecceEEEEee
Q 025711 3 IFCLPPSGVIPLHNHPGMTVFSKLLFGTMHIKSYD 37 (249)
Q Consensus 3 IF~Lp~g~~IPLHDHPgMtvlsKvLyGsl~v~SYd 37 (249)
...|.+|+.+|+|.|.++. +.=||.|++.+...|
T Consensus 71 ~~~l~pG~~~~~HwH~~~E-~~yVl~G~~~v~~~d 104 (367)
T TIGR03404 71 NMRLEPGAIRELHWHKEAE-WAYVLYGSCRITAVD 104 (367)
T ss_pred EEEEcCCCCCCcccCCCce-EEEEEeeEEEEEEEc
Confidence 4568999999999999986 899999999988754
No 15
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=54.79 E-value=13 Score=33.53 Aligned_cols=33 Identities=18% Similarity=0.202 Sum_probs=26.4
Q ss_pred CceeecCCCCcccC-CCCCCCeeeeeeeecceEEE
Q 025711 1 MGIFCLPPSGVIPL-HNHPGMTVFSKLLFGTMHIK 34 (249)
Q Consensus 1 mgIF~Lp~g~~IPL-HDHPgMtvlsKvLyGsl~v~ 34 (249)
|.||.|+||+.||. |-|+.++++ =||-|+..++
T Consensus 181 ~~~~~~~PG~~~~~~~~H~~eh~~-yiL~G~G~~~ 214 (260)
T TIGR03214 181 VHILSFEPGASHPYIETHVMEHGL-YVLEGKGVYN 214 (260)
T ss_pred EEEEEECCCcccCCcccccceeEE-EEEeceEEEE
Confidence 57899999999996 777766666 7888888753
No 16
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=49.22 E-value=1e+02 Score=30.77 Aligned_cols=42 Identities=26% Similarity=0.491 Sum_probs=31.1
Q ss_pred CeeEeecCCCCCeeEeeecC--ceeEeEeeCCCCCCCC--CCCCcccc
Q 025711 157 NTSILYPADGGNMHCFTAVT--ACAVLDVLGPPYSDSE--GRHCTYYQ 200 (249)
Q Consensus 157 ~t~vL~P~~ggNlH~ftAv~--pcAfLDIL~PPY~~~~--gR~CtYY~ 200 (249)
+-++..|. |=.|++.+.+ |+-||-|.+|+|...+ -|-+-.|.
T Consensus 431 GDSi~ip~--g~~H~~~N~g~~~l~iI~V~~g~yl~edDivr~~d~y~ 476 (478)
T PRK15460 431 NESIYIPL--GATHCLENPGKIPLDLIEVRSGSYLEEDDVVRFADRYG 476 (478)
T ss_pred CCEEEECC--CCcEEEEcCCCCCEEEEEEEcCCCCCCCcEEEeecccC
Confidence 33577775 8899999984 9999999999996533 35555553
No 17
>TIGR01221 rmlC dTDP-4-dehydrorhamnose 3,5-epimerase. This enzyme participates in the biosynthesis of dTDP-L-rhamnose, often as a precursor to LPS O-antigen
Probab=47.65 E-value=1.7e+02 Score=25.49 Aligned_cols=47 Identities=19% Similarity=0.223 Sum_probs=33.1
Q ss_pred eecCCCCeeEeecCCCCCeeEeeecCc-eeEeEeeCCCCCCCCCCCCccc
Q 025711 151 DLTAPCNTSILYPADGGNMHCFTAVTA-CAVLDVLGPPYSDSEGRHCTYY 199 (249)
Q Consensus 151 ~~ta~c~t~vL~P~~ggNlH~ftAv~p-cAfLDIL~PPY~~~~gR~CtYY 199 (249)
.|++.....++-|. |=.|-|.+++. +-++=..+=+|+...-|..+|-
T Consensus 99 ~L~~~~~~~l~IP~--G~aHGF~~L~d~a~v~Y~~~~~y~p~~e~gi~~~ 146 (176)
T TIGR01221 99 LLSAENKRQLWIPE--GFAHGFVVLSDEAEFLYKCTDYYAPEYERGIIWN 146 (176)
T ss_pred EECCCCCCEEEeCC--cceeEEEEcCCCeEEEEeCCCCcCcccccccCCC
Confidence 45555566777785 99999999985 5556666889997655545444
No 18
>PRK11171 hypothetical protein; Provisional
Probab=35.42 E-value=43 Score=30.33 Aligned_cols=33 Identities=21% Similarity=0.191 Sum_probs=27.4
Q ss_pred ceeecCCCCcccCCCCCCCeeeeeeeecceEEE
Q 025711 2 GIFCLPPSGVIPLHNHPGMTVFSKLLFGTMHIK 34 (249)
Q Consensus 2 gIF~Lp~g~~IPLHDHPgMtvlsKvLyGsl~v~ 34 (249)
-.|.|++|+.|+.|-|-++.=..=||-|++.++
T Consensus 187 ~~~~l~PG~~~~~~~~~~~ee~i~Vl~G~~~~~ 219 (266)
T PRK11171 187 NIVTFEPGASIPFVETHVMEHGLYVLEGKGVYR 219 (266)
T ss_pred EEEEECCCCEEccCcCCCceEEEEEEeCEEEEE
Confidence 458899999999975666777778999999985
No 19
>COG5553 Predicted metal-dependent enzyme of the double-stranded beta helix superfamily [General function prediction only]
Probab=31.13 E-value=34 Score=30.90 Aligned_cols=33 Identities=30% Similarity=0.348 Sum_probs=27.0
Q ss_pred eecCCCCcccCCCCCCCeeeeeeeecceEEEEee
Q 025711 4 FCLPPSGVIPLHNHPGMTVFSKLLFGTMHIKSYD 37 (249)
Q Consensus 4 F~Lp~g~~IPLHDHPgMtvlsKvLyGsl~v~SYd 37 (249)
|.+-||..-|.||| +|-++.-||.|.=.-.-|-
T Consensus 78 ~t~~PG~~~p~HnH-~~wglVgil~G~E~n~~y~ 110 (191)
T COG5553 78 ITLSPGVQYPPHNH-LMWGLVGILWGGETNFIYP 110 (191)
T ss_pred EEeCCCcccCCccc-chheeeeeeecccccceec
Confidence 67899999999999 7899999999976544443
No 20
>PF00190 Cupin_1: Cupin; InterPro: IPR006045 This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. ; GO: 0045735 nutrient reservoir activity; PDB: 2E9Q_A 2EVX_A 1OD5_A 1UCX_A 1UD1_C 1FXZ_C 3KGL_C 3KSC_D 1UIJ_F 1IPK_B ....
Probab=29.49 E-value=35 Score=27.46 Aligned_cols=33 Identities=15% Similarity=0.238 Sum_probs=29.1
Q ss_pred eecCCCCcccCCCCCCCeeeeeeeecceEEEEee
Q 025711 4 FCLPPSGVIPLHNHPGMTVFSKLLFGTMHIKSYD 37 (249)
Q Consensus 4 F~Lp~g~~IPLHDHPgMtvlsKvLyGsl~v~SYd 37 (249)
..|.+|+.++.|.| .-+-+.=|+.|+.++.-..
T Consensus 39 ~~i~pg~~~~Ph~h-~a~~i~~V~~G~~~~~~v~ 71 (144)
T PF00190_consen 39 VLIEPGGLRAPHYH-NADEIVYVIEGRGRVGVVG 71 (144)
T ss_dssp EEEETTEEEEEEEE-SSEEEEEEEESEEEEEEEE
T ss_pred eehhcCCccceeEe-eeeEEeeeeccceEEEEEe
Confidence 34699999999999 9999999999999976664
No 21
>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria.
Probab=28.95 E-value=55 Score=24.04 Aligned_cols=32 Identities=19% Similarity=0.327 Sum_probs=28.4
Q ss_pred eeecCCCCcccCCCCCCCeeeeeeeecceEEEEe
Q 025711 3 IFCLPPSGVIPLHNHPGMTVFSKLLFGTMHIKSY 36 (249)
Q Consensus 3 IF~Lp~g~~IPLHDHPgMtvlsKvLyGsl~v~SY 36 (249)
+|.|.+|..+.|+..-++. ++|..|.+=|+-.
T Consensus 1 ~~~L~~g~~~~lr~~~~~~--l~v~~G~vWlT~~ 32 (63)
T PF11142_consen 1 TFELAPGETLSLRAAAGQR--LRVESGRVWLTRE 32 (63)
T ss_pred CEEeCCCceEEeEcCCCcE--EEEccccEEEECC
Confidence 5899999999999999998 8999999887653
No 22
>PF05523 FdtA: WxcM-like, C-terminal ; InterPro: IPR008894 This entry includes FdtA (Q6T1W8 from SWISSPROT) from Aneurinibacillus thermoaerophilus, which has been characterised as a dTDP-6-deoxy-3,4-keto-hexulose isomerase []. It also includes WxcM (Q93S92 from SWISSPROT) from Xanthomonas campestris pv campestris) []. ; PDB: 2PAK_A 2PAE_A 2PA7_B 2PAM_A.
Probab=27.67 E-value=93 Score=25.43 Aligned_cols=33 Identities=24% Similarity=0.326 Sum_probs=21.6
Q ss_pred cCCCCcccCCCCCCCeeeeeeeecceEEEEeec
Q 025711 6 LPPSGVIPLHNHPGMTVFSKLLFGTMHIKSYDW 38 (249)
Q Consensus 6 Lp~g~~IPLHDHPgMtvlsKvLyGsl~v~SYd~ 38 (249)
.|+|.+=-.|-|..++=+.=+|.|+..|..+|+
T Consensus 40 ~~~~~~RG~H~Hk~~~~~~~~l~Gs~~v~~~d~ 72 (131)
T PF05523_consen 40 VPPGVIRGWHAHKKTTQWFIVLSGSFKVVLDDG 72 (131)
T ss_dssp --SS--EEEEEESS--EEEEEEES-EEEEEE-S
T ss_pred CCCCCcccccccccccEEEEEEeCEEEEEEecC
Confidence 567776788999999999999999999997663
No 23
>COG1898 RfbC dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes [Cell envelope biogenesis, outer membrane]
Probab=23.31 E-value=3.6e+02 Score=23.85 Aligned_cols=39 Identities=23% Similarity=0.324 Sum_probs=26.6
Q ss_pred eecCCCCeeEeecCCCCCeeEeeecCcee-EeEeeCCCCCCC
Q 025711 151 DLTAPCNTSILYPADGGNMHCFTAVTACA-VLDVLGPPYSDS 191 (249)
Q Consensus 151 ~~ta~c~t~vL~P~~ggNlH~ftAv~pcA-fLDIL~PPY~~~ 191 (249)
++++.+...++-|. |=.|-|.+++..+ |+=..+=.|+..
T Consensus 99 ~ls~~N~~~l~IP~--G~AHGf~~L~d~~~~~y~~~~~Y~p~ 138 (173)
T COG1898 99 VLSAENKRQLYIPP--GFAHGFQVLSDDAEVVYKVTEEYDPE 138 (173)
T ss_pred EecCCCceEEEeCC--cccceeEEccCceEEEEEecceeCcc
Confidence 56677677777784 9999999998544 444444456654
No 24
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=20.33 E-value=71 Score=28.65 Aligned_cols=29 Identities=17% Similarity=0.118 Sum_probs=24.8
Q ss_pred CCcccCCCC-CCCeeeeeeeecceEEEEee
Q 025711 9 SGVIPLHNH-PGMTVFSKLLFGTMHIKSYD 37 (249)
Q Consensus 9 g~~IPLHDH-PgMtvlsKvLyGsl~v~SYd 37 (249)
++.+.=|+| ||--..++||.|++.+.-||
T Consensus 21 ~~~~~~H~t~~g~~~~~~vl~G~l~~~~~d 50 (287)
T PRK12335 21 EMFQEKHNTKEGTWAKLTVLKGELKFYELT 50 (287)
T ss_pred HHHHhccCCCCCcceEEEEEeeeEEEEEEC
Confidence 344556999 89999999999999999996
Done!