Query 025712
Match_columns 249
No_of_seqs 114 out of 1807
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 08:43:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025712.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025712hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1064 AdhP Zn-dependent alco 100.0 2.7E-48 5.9E-53 330.9 21.0 226 13-245 2-230 (339)
2 KOG0024 Sorbitol dehydrogenase 100.0 9E-48 2E-52 319.6 21.3 233 12-246 2-235 (354)
3 COG1062 AdhC Zn-dependent alco 100.0 3E-42 6.5E-47 289.0 20.9 228 14-246 2-252 (366)
4 KOG0023 Alcohol dehydrogenase, 100.0 1.7E-41 3.8E-46 281.6 20.9 230 14-248 9-250 (360)
5 KOG0022 Alcohol dehydrogenase, 100.0 4.2E-40 9.2E-45 272.3 20.6 231 14-247 7-261 (375)
6 PRK09880 L-idonate 5-dehydroge 100.0 3E-39 6.4E-44 282.7 25.0 216 14-232 4-223 (343)
7 cd08239 THR_DH_like L-threonin 100.0 4.5E-38 9.7E-43 274.5 26.3 226 15-245 1-227 (339)
8 PLN02740 Alcohol dehydrogenase 100.0 1.1E-37 2.4E-42 276.5 25.6 232 13-246 9-266 (381)
9 COG0604 Qor NADPH:quinone redu 100.0 4.7E-38 1E-42 272.4 22.4 202 15-246 1-208 (326)
10 TIGR02818 adh_III_F_hyde S-(hy 100.0 2.1E-37 4.6E-42 273.5 26.6 229 15-246 2-253 (368)
11 cd08281 liver_ADH_like1 Zinc-d 100.0 2.7E-37 5.9E-42 273.0 26.1 226 15-246 1-257 (371)
12 TIGR02819 fdhA_non_GSH formald 100.0 6.7E-37 1.5E-41 272.1 25.5 225 15-245 3-250 (393)
13 cd08301 alcohol_DH_plants Plan 100.0 1.4E-36 3.1E-41 268.2 26.5 229 14-245 2-254 (369)
14 TIGR03451 mycoS_dep_FDH mycoth 100.0 1.2E-36 2.6E-41 267.7 25.1 227 14-246 1-242 (358)
15 PLN02827 Alcohol dehydrogenase 100.0 2E-36 4.3E-41 268.1 26.4 227 14-246 12-261 (378)
16 cd08300 alcohol_DH_class_III c 100.0 2.1E-36 4.6E-41 267.1 26.4 230 14-246 2-254 (368)
17 COG1063 Tdh Threonine dehydrog 100.0 3E-36 6.4E-41 264.0 23.2 226 15-246 1-235 (350)
18 cd08277 liver_alcohol_DH_like 100.0 1.7E-35 3.7E-40 261.1 26.3 228 14-245 2-251 (365)
19 cd08230 glucose_DH Glucose deh 100.0 1.2E-35 2.7E-40 260.9 24.3 214 15-232 1-227 (355)
20 PRK10309 galactitol-1-phosphat 100.0 3.4E-35 7.4E-40 257.3 25.3 223 15-245 1-224 (347)
21 cd08233 butanediol_DH_like (2R 100.0 6.2E-35 1.3E-39 256.0 26.6 230 15-246 1-238 (351)
22 PLN02586 probable cinnamyl alc 100.0 5.4E-35 1.2E-39 257.4 23.7 223 6-232 4-237 (360)
23 TIGR03201 dearomat_had 6-hydro 100.0 9.6E-35 2.1E-39 254.8 24.0 224 18-246 2-234 (349)
24 TIGR02822 adh_fam_2 zinc-bindi 100.0 1E-34 2.2E-39 252.8 23.0 203 24-231 13-217 (329)
25 KOG1197 Predicted quinone oxid 100.0 5E-35 1.1E-39 235.7 18.5 200 12-245 6-211 (336)
26 PLN02702 L-idonate 5-dehydroge 100.0 7.7E-34 1.7E-38 250.3 26.6 233 12-244 15-247 (364)
27 cd08299 alcohol_DH_class_I_II_ 100.0 9.2E-34 2E-38 250.7 26.5 228 14-245 7-257 (373)
28 PLN02178 cinnamyl-alcohol dehy 100.0 6.3E-34 1.4E-38 251.8 24.5 216 13-232 3-232 (375)
29 cd08237 ribitol-5-phosphate_DH 100.0 5.1E-34 1.1E-38 249.5 21.9 206 14-226 2-212 (341)
30 PRK10083 putative oxidoreducta 100.0 2.4E-33 5.1E-38 244.6 25.5 221 15-241 1-222 (339)
31 cd08231 MDR_TM0436_like Hypoth 100.0 6.8E-33 1.5E-37 243.9 25.7 227 16-245 2-245 (361)
32 cd08256 Zn_ADH2 Alcohol dehydr 100.0 1.3E-32 2.8E-37 241.2 26.6 229 15-245 1-239 (350)
33 cd08285 NADP_ADH NADP(H)-depen 100.0 1.7E-32 3.7E-37 240.5 26.1 226 15-245 1-231 (351)
34 cd05285 sorbitol_DH Sorbitol d 100.0 2.7E-32 5.8E-37 238.6 25.1 227 17-245 1-230 (343)
35 cd05279 Zn_ADH1 Liver alcohol 100.0 1.3E-31 2.8E-36 236.3 26.1 226 16-245 2-250 (365)
36 cd08296 CAD_like Cinnamyl alco 100.0 1.2E-31 2.7E-36 233.5 25.5 223 15-244 1-226 (333)
37 cd08278 benzyl_alcohol_DH Benz 100.0 1.7E-31 3.6E-36 235.6 26.0 226 13-245 1-251 (365)
38 cd05284 arabinose_DH_like D-ar 100.0 1.8E-31 3.9E-36 232.7 25.2 226 15-245 1-231 (340)
39 cd05278 FDH_like Formaldehyde 100.0 1.9E-31 4.1E-36 233.1 25.1 226 15-245 1-232 (347)
40 PLN02514 cinnamyl-alcohol dehy 100.0 1.1E-31 2.4E-36 236.1 23.7 215 14-232 9-234 (357)
41 cd08283 FDH_like_1 Glutathione 100.0 3.1E-31 6.8E-36 235.6 26.6 226 15-245 1-250 (386)
42 PRK05396 tdh L-threonine 3-deh 100.0 2.5E-31 5.5E-36 232.1 24.9 227 15-245 1-228 (341)
43 cd08238 sorbose_phosphate_red 100.0 3.3E-31 7.2E-36 237.1 25.3 221 13-246 1-254 (410)
44 cd08246 crotonyl_coA_red croto 100.0 8.8E-31 1.9E-35 233.1 26.0 220 12-232 10-247 (393)
45 cd08265 Zn_ADH3 Alcohol dehydr 100.0 6.6E-31 1.4E-35 233.4 24.9 227 18-246 32-272 (384)
46 cd08282 PFDH_like Pseudomonas 100.0 1.3E-30 2.9E-35 230.7 26.4 224 15-245 1-240 (375)
47 cd08286 FDH_like_ADH2 formalde 100.0 1.7E-30 3.7E-35 227.2 26.1 226 15-245 1-231 (345)
48 cd08232 idonate-5-DH L-idonate 100.0 1E-30 2.2E-35 228.0 24.0 214 19-232 2-219 (339)
49 cd08287 FDH_like_ADH3 formalde 100.0 2E-30 4.3E-35 226.7 25.9 224 15-245 1-233 (345)
50 cd08284 FDH_like_2 Glutathione 100.0 1.8E-30 3.9E-35 226.7 25.4 225 15-246 1-232 (344)
51 cd08261 Zn_ADH7 Alcohol dehydr 100.0 2.5E-30 5.5E-35 225.4 26.2 223 15-245 1-223 (337)
52 cd08242 MDR_like Medium chain 100.0 1.4E-30 2.9E-35 225.4 24.2 208 15-232 1-208 (319)
53 cd08235 iditol_2_DH_like L-idi 100.0 4.5E-30 9.7E-35 224.2 26.5 225 15-245 1-230 (343)
54 PRK09422 ethanol-active dehydr 100.0 4.2E-30 9.1E-35 223.9 25.1 224 15-245 1-228 (338)
55 cd08262 Zn_ADH8 Alcohol dehydr 100.0 7.8E-30 1.7E-34 222.6 25.3 206 15-232 1-215 (341)
56 cd08236 sugar_DH NAD(P)-depend 100.0 7.8E-30 1.7E-34 222.7 24.9 222 15-244 1-222 (343)
57 cd08279 Zn_ADH_class_III Class 100.0 1.3E-29 2.7E-34 223.4 25.8 225 15-245 1-247 (363)
58 TIGR01202 bchC 2-desacetyl-2-h 100.0 2.4E-30 5.2E-35 223.3 20.5 185 15-221 2-187 (308)
59 cd08240 6_hydroxyhexanoate_dh_ 100.0 1.5E-29 3.2E-34 221.7 24.9 228 15-245 1-240 (350)
60 TIGR01751 crot-CoA-red crotony 100.0 1.8E-29 3.8E-34 225.2 25.2 219 13-232 6-243 (398)
61 PRK13771 putative alcohol dehy 100.0 2.5E-29 5.3E-34 218.7 23.2 211 15-231 1-214 (334)
62 cd05281 TDH Threonine dehydrog 100.0 5.4E-29 1.2E-33 217.5 24.9 226 15-245 1-227 (341)
63 cd08297 CAD3 Cinnamyl alcohol 100.0 9.5E-29 2.1E-33 215.7 26.2 225 15-245 1-230 (341)
64 cd08260 Zn_ADH6 Alcohol dehydr 100.0 1.2E-28 2.7E-33 215.4 26.9 225 15-245 1-230 (345)
65 cd08291 ETR_like_1 2-enoyl thi 100.0 2.7E-29 5.9E-34 217.9 22.3 199 15-246 1-209 (324)
66 cd05283 CAD1 Cinnamyl alcohol 100.0 5.6E-29 1.2E-33 217.2 24.2 212 17-232 2-222 (337)
67 TIGR00692 tdh L-threonine 3-de 100.0 4.9E-29 1.1E-33 217.7 23.9 221 21-245 5-226 (340)
68 cd08234 threonine_DH_like L-th 100.0 7.4E-29 1.6E-33 215.6 24.8 213 15-232 1-213 (334)
69 KOG0025 Zn2+-binding dehydroge 100.0 1.4E-29 2.9E-34 207.7 17.9 186 13-228 18-214 (354)
70 cd08293 PTGR2 Prostaglandin re 100.0 5.4E-29 1.2E-33 217.6 23.0 191 23-245 20-221 (345)
71 cd08259 Zn_ADH5 Alcohol dehydr 100.0 1.5E-28 3.2E-33 213.0 25.4 212 15-231 1-215 (332)
72 cd08263 Zn_ADH10 Alcohol dehyd 100.0 1.5E-28 3.2E-33 216.9 25.6 225 15-245 1-252 (367)
73 cd08298 CAD2 Cinnamyl alcohol 100.0 2.4E-28 5.1E-33 212.1 24.2 213 15-232 1-220 (329)
74 cd08258 Zn_ADH4 Alcohol dehydr 100.0 4E-28 8.7E-33 209.2 25.4 223 15-245 1-229 (306)
75 TIGR03366 HpnZ_proposed putati 100.0 1.1E-28 2.4E-33 210.2 18.9 159 73-231 1-173 (280)
76 cd08292 ETR_like_2 2-enoyl thi 100.0 6E-28 1.3E-32 208.8 23.7 199 15-246 1-205 (324)
77 cd08264 Zn_ADH_like2 Alcohol d 100.0 7.4E-28 1.6E-32 208.7 24.2 207 15-231 1-211 (325)
78 cd08266 Zn_ADH_like1 Alcohol d 100.0 1.2E-27 2.5E-32 207.6 25.4 225 15-245 1-231 (342)
79 cd08254 hydroxyacyl_CoA_DH 6-h 100.0 2.8E-27 6E-32 205.7 24.8 221 15-241 1-225 (338)
80 cd08245 CAD Cinnamyl alcohol d 100.0 3E-27 6.6E-32 205.3 23.9 212 16-232 1-215 (330)
81 cd08294 leukotriene_B4_DH_like 100.0 4.5E-27 9.7E-32 203.9 23.3 179 24-245 19-208 (329)
82 cd08295 double_bond_reductase_ 100.0 8.1E-27 1.8E-31 203.6 23.3 188 23-245 18-218 (338)
83 TIGR02825 B4_12hDH leukotriene 100.0 5.4E-27 1.2E-31 203.6 21.2 181 22-244 15-203 (325)
84 PLN03154 putative allyl alcoho 100.0 1.6E-26 3.5E-31 202.7 24.3 197 13-245 7-225 (348)
85 TIGR02817 adh_fam_1 zinc-bindi 100.0 7.5E-27 1.6E-31 203.2 21.4 189 23-243 14-211 (336)
86 cd08274 MDR9 Medium chain dehy 99.9 6.5E-26 1.4E-30 198.4 23.8 206 15-231 1-229 (350)
87 cd08290 ETR 2-enoyl thioester 99.9 3.8E-26 8.3E-31 199.2 21.5 203 15-245 1-218 (341)
88 cd08244 MDR_enoyl_red Possible 99.9 1E-25 2.2E-30 194.7 24.0 202 15-245 1-207 (324)
89 cd08269 Zn_ADH9 Alcohol dehydr 99.9 8.7E-26 1.9E-30 194.2 22.0 191 21-245 2-194 (312)
90 PRK10754 quinone oxidoreductas 99.9 2.2E-25 4.9E-30 193.3 22.6 199 15-246 2-206 (327)
91 cd08249 enoyl_reductase_like e 99.9 8.7E-26 1.9E-30 197.3 19.8 203 15-245 1-218 (339)
92 KOG1198 Zinc-binding oxidoredu 99.9 1.1E-25 2.4E-30 195.7 20.0 190 25-245 19-222 (347)
93 cd05188 MDR Medium chain reduc 99.9 2.3E-25 5.1E-30 187.1 21.3 192 40-241 1-194 (271)
94 PTZ00354 alcohol dehydrogenase 99.9 4.8E-25 1E-29 191.2 23.8 199 14-245 1-206 (334)
95 cd08276 MDR7 Medium chain dehy 99.9 9.8E-25 2.1E-29 189.3 25.5 220 15-245 1-225 (336)
96 cd08250 Mgc45594_like Mgc45594 99.9 9.4E-25 2E-29 189.5 23.9 194 15-243 2-202 (329)
97 cd05280 MDR_yhdh_yhfp Yhdh and 99.9 7.4E-25 1.6E-29 189.5 22.3 191 15-232 1-200 (325)
98 cd08270 MDR4 Medium chain dehy 99.9 1.1E-24 2.3E-29 187.0 22.0 179 15-229 1-183 (305)
99 cd08288 MDR_yhdh Yhdh putative 99.9 1.6E-24 3.4E-29 187.6 22.5 191 15-232 1-200 (324)
100 COG2130 Putative NADP-dependen 99.9 1.1E-24 2.3E-29 180.4 18.9 193 15-245 9-216 (340)
101 cd08248 RTN4I1 Human Reticulon 99.9 2E-24 4.4E-29 188.9 21.8 198 15-241 1-222 (350)
102 cd05282 ETR_like 2-enoyl thioe 99.9 1.7E-24 3.6E-29 187.1 20.9 189 25-246 13-204 (323)
103 cd08289 MDR_yhfp_like Yhfp put 99.9 4.1E-24 8.9E-29 185.1 22.5 191 15-232 1-200 (326)
104 TIGR02823 oxido_YhdH putative 99.9 6.4E-24 1.4E-28 183.8 22.0 190 16-232 1-199 (323)
105 cd08253 zeta_crystallin Zeta-c 99.9 1.1E-23 2.4E-28 181.1 23.3 203 15-245 1-209 (325)
106 cd05276 p53_inducible_oxidored 99.9 1.2E-23 2.5E-28 180.6 23.0 198 15-245 1-204 (323)
107 cd08243 quinone_oxidoreductase 99.9 1.1E-23 2.4E-28 181.3 22.6 199 15-244 1-205 (320)
108 cd08252 AL_MDR Arginate lyase 99.9 1E-23 2.2E-28 183.4 22.5 196 15-242 1-211 (336)
109 cd08271 MDR5 Medium chain dehy 99.9 3.6E-23 7.7E-28 178.5 23.4 199 15-245 1-205 (325)
110 cd05288 PGDH Prostaglandin deh 99.9 2.9E-23 6.4E-28 180.0 22.8 187 23-245 17-211 (329)
111 cd08251 polyketide_synthase po 99.9 2.6E-23 5.7E-28 177.4 21.1 182 33-245 2-185 (303)
112 cd08272 MDR6 Medium chain dehy 99.9 5.6E-23 1.2E-27 177.1 22.5 201 15-245 1-207 (326)
113 cd05286 QOR2 Quinone oxidoredu 99.9 1.6E-22 3.5E-27 173.3 23.1 187 24-245 12-201 (320)
114 cd08247 AST1_like AST1 is a cy 99.9 2.1E-22 4.6E-27 176.6 23.6 191 16-232 2-206 (352)
115 cd08273 MDR8 Medium chain dehy 99.9 1.4E-22 3E-27 175.8 22.1 183 16-231 2-190 (331)
116 cd08268 MDR2 Medium chain dehy 99.9 4.9E-22 1.1E-26 171.2 23.0 203 15-245 1-209 (328)
117 cd05289 MDR_like_2 alcohol deh 99.9 3.6E-22 7.8E-27 170.7 20.8 191 15-232 1-197 (309)
118 TIGR02824 quinone_pig3 putativ 99.9 1E-21 2.2E-26 169.0 23.1 198 15-245 1-204 (325)
119 cd08267 MDR1 Medium chain dehy 99.9 3.8E-22 8.3E-27 171.7 19.8 179 27-232 15-196 (319)
120 cd08241 QOR1 Quinone oxidoredu 99.9 2E-21 4.4E-26 166.8 22.2 197 15-245 1-204 (323)
121 PF08240 ADH_N: Alcohol dehydr 99.9 4.1E-23 8.9E-28 151.6 9.2 109 38-149 1-109 (109)
122 cd05195 enoyl_red enoyl reduct 99.9 2.4E-21 5.1E-26 163.7 19.7 170 39-245 1-175 (293)
123 cd08275 MDR3 Medium chain dehy 99.9 1.3E-20 2.7E-25 163.4 23.3 188 24-245 12-203 (337)
124 smart00829 PKS_ER Enoylreducta 99.9 1E-20 2.3E-25 159.7 18.8 165 43-245 2-171 (288)
125 cd08255 2-desacetyl-2-hydroxye 99.8 1.1E-18 2.3E-23 148.0 15.3 134 66-230 16-150 (277)
126 KOG1196 Predicted NAD-dependen 99.7 1.1E-15 2.4E-20 126.7 19.8 177 30-243 28-218 (343)
127 KOG1202 Animal-type fatty acid 99.7 1.7E-16 3.7E-21 149.8 11.3 183 24-247 1427-1623(2376)
128 PF00107 ADH_zinc_N: Zinc-bind 98.6 2.3E-07 4.9E-12 69.5 6.9 55 189-246 1-55 (130)
129 PRK09424 pntA NAD(P) transhydr 98.1 1.2E-05 2.5E-10 73.7 8.1 55 176-231 162-217 (509)
130 cd05213 NAD_bind_Glutamyl_tRNA 97.3 0.00025 5.5E-09 61.4 4.6 81 144-224 139-224 (311)
131 TIGR01035 hemA glutamyl-tRNA r 97.3 7.8E-06 1.7E-10 73.6 -5.5 133 73-224 89-226 (417)
132 TIGR00561 pntA NAD(P) transhyd 97.2 0.0022 4.7E-08 59.0 9.4 49 177-226 162-210 (511)
133 cd00401 AdoHcyase S-adenosyl-L 97.2 0.001 2.2E-08 59.6 7.0 50 176-226 199-248 (413)
134 PRK00517 prmA ribosomal protei 96.9 0.0071 1.5E-07 50.7 8.8 83 134-221 78-160 (250)
135 PRK00045 hemA glutamyl-tRNA re 96.8 0.003 6.6E-08 57.1 6.0 133 73-224 91-228 (423)
136 PF01488 Shikimate_DH: Shikima 96.7 0.0074 1.6E-07 45.6 7.1 46 177-222 10-56 (135)
137 PRK12771 putative glutamate sy 96.6 0.0055 1.2E-07 57.5 6.9 56 175-231 133-209 (564)
138 PF01262 AlaDh_PNT_C: Alanine 96.6 0.0088 1.9E-07 47.0 6.7 49 178-227 19-67 (168)
139 COG4221 Short-chain alcohol de 96.4 0.022 4.8E-07 47.1 8.5 67 178-246 5-77 (246)
140 PRK05476 S-adenosyl-L-homocyst 96.4 0.014 3.1E-07 52.5 7.9 55 168-223 199-255 (425)
141 COG3967 DltE Short-chain dehyd 96.4 0.027 5.7E-07 45.5 8.4 65 178-245 4-72 (245)
142 PRK08306 dipicolinate synthase 96.3 0.017 3.6E-07 49.8 7.4 47 178-225 151-197 (296)
143 TIGR00518 alaDH alanine dehydr 96.2 0.023 5E-07 50.5 8.1 46 178-224 166-212 (370)
144 PRK05993 short chain dehydroge 96.1 0.055 1.2E-06 45.7 9.8 49 178-227 3-52 (277)
145 COG0031 CysK Cysteine synthase 96.0 0.066 1.4E-06 45.8 9.6 59 172-231 55-116 (300)
146 PRK08017 oxidoreductase; Provi 96.0 0.047 1E-06 45.2 8.7 47 180-227 3-50 (256)
147 TIGR00936 ahcY adenosylhomocys 95.9 0.022 4.7E-07 51.1 6.7 48 176-224 192-239 (406)
148 PRK05786 fabG 3-ketoacyl-(acyl 95.8 0.097 2.1E-06 42.8 9.7 41 178-219 4-45 (238)
149 PRK06182 short chain dehydroge 95.7 0.092 2E-06 44.1 9.4 48 178-226 2-50 (273)
150 PRK05693 short chain dehydroge 95.6 0.098 2.1E-06 44.0 9.1 51 180-231 2-54 (274)
151 PRK12550 shikimate 5-dehydroge 95.6 0.074 1.6E-06 45.2 8.2 52 169-220 112-163 (272)
152 PLN02494 adenosylhomocysteinas 95.6 0.04 8.6E-07 50.1 6.8 47 177-224 252-298 (477)
153 PRK03369 murD UDP-N-acetylmura 95.5 0.051 1.1E-06 50.1 7.5 50 176-226 9-58 (488)
154 KOG1014 17 beta-hydroxysteroid 95.4 0.089 1.9E-06 45.0 7.9 67 177-246 47-123 (312)
155 PRK04148 hypothetical protein; 95.3 0.13 2.7E-06 38.8 7.8 52 175-228 13-64 (134)
156 PF02826 2-Hacid_dh_C: D-isome 95.3 0.061 1.3E-06 42.6 6.5 47 177-224 34-80 (178)
157 cd01075 NAD_bind_Leu_Phe_Val_D 95.3 0.077 1.7E-06 42.9 7.2 48 177-225 26-74 (200)
158 PRK08324 short chain dehydroge 95.3 0.08 1.7E-06 50.9 8.3 79 133-221 385-464 (681)
159 COG0169 AroE Shikimate 5-dehyd 95.3 0.065 1.4E-06 45.7 6.7 45 177-221 124-168 (283)
160 PRK12828 short chain dehydroge 95.1 0.18 3.9E-06 41.0 9.0 37 178-215 6-43 (239)
161 TIGR02853 spore_dpaA dipicolin 95.1 0.092 2E-06 45.0 7.3 45 178-223 150-194 (287)
162 PRK07060 short chain dehydroge 95.0 0.18 3.8E-06 41.4 8.7 47 178-225 8-56 (245)
163 PRK12549 shikimate 5-dehydroge 94.9 0.088 1.9E-06 45.0 6.8 44 177-220 125-168 (284)
164 PRK06139 short chain dehydroge 94.8 0.2 4.3E-06 43.7 8.8 47 178-225 6-57 (330)
165 TIGR03325 BphB_TodD cis-2,3-di 94.7 0.26 5.6E-06 41.1 9.0 43 178-221 4-47 (262)
166 COG0300 DltE Short-chain dehyd 94.7 0.23 5.1E-06 41.9 8.6 45 176-221 3-48 (265)
167 TIGR01809 Shik-DH-AROM shikima 94.7 0.11 2.4E-06 44.4 6.7 42 178-219 124-165 (282)
168 PRK14027 quinate/shikimate deh 94.6 0.12 2.6E-06 44.2 6.8 44 177-220 125-168 (283)
169 PRK00258 aroE shikimate 5-dehy 94.6 0.13 2.8E-06 43.8 6.9 44 177-220 121-164 (278)
170 PRK08177 short chain dehydroge 94.5 0.23 4.9E-06 40.4 8.1 43 180-223 2-45 (225)
171 PRK06057 short chain dehydroge 94.5 0.35 7.5E-06 40.1 9.3 46 178-224 6-53 (255)
172 KOG1252 Cystathionine beta-syn 94.5 0.27 5.9E-06 42.6 8.5 63 166-229 86-156 (362)
173 PRK06949 short chain dehydroge 94.5 0.36 7.8E-06 39.9 9.3 42 177-219 7-49 (258)
174 PRK07831 short chain dehydroge 94.4 0.46 9.9E-06 39.6 9.8 43 176-219 14-58 (262)
175 PRK07814 short chain dehydroge 94.4 0.4 8.7E-06 40.0 9.4 41 178-219 9-50 (263)
176 PRK07825 short chain dehydroge 94.3 0.46 9.9E-06 39.8 9.7 44 179-223 5-50 (273)
177 PRK12742 oxidoreductase; Provi 94.3 0.28 6.1E-06 40.0 8.1 47 178-225 5-54 (237)
178 COG2518 Pcm Protein-L-isoaspar 94.2 0.41 8.9E-06 38.9 8.6 56 168-226 62-121 (209)
179 PRK06841 short chain dehydroge 94.2 0.37 8E-06 39.8 8.8 44 178-222 14-58 (255)
180 PRK05872 short chain dehydroge 94.2 0.26 5.7E-06 42.1 8.1 45 178-223 8-54 (296)
181 PRK05866 short chain dehydroge 94.1 0.53 1.2E-05 40.2 9.8 41 178-219 39-80 (293)
182 PRK05867 short chain dehydroge 94.1 0.37 8.1E-06 39.9 8.6 41 178-219 8-49 (253)
183 PF02254 TrkA_N: TrkA-N domain 94.0 0.45 9.8E-06 34.4 8.0 49 182-232 1-49 (116)
184 PRK06200 2,3-dihydroxy-2,3-dih 94.0 0.39 8.6E-06 40.0 8.6 43 178-221 5-48 (263)
185 PRK11761 cysM cysteine synthas 94.0 0.9 2E-05 39.0 10.9 60 172-231 56-117 (296)
186 PF13823 ADH_N_assoc: Alcohol 94.0 0.083 1.8E-06 26.9 2.7 22 15-36 1-22 (23)
187 PTZ00075 Adenosylhomocysteinas 93.9 0.19 4.1E-06 45.9 6.9 47 176-223 251-297 (476)
188 KOG1207 Diacetyl reductase/L-x 93.9 0.32 6.9E-06 38.4 7.0 60 178-238 6-66 (245)
189 PRK07677 short chain dehydroge 93.8 0.51 1.1E-05 39.1 8.9 40 179-219 1-41 (252)
190 PRK12829 short chain dehydroge 93.8 0.43 9.4E-06 39.5 8.5 44 177-221 9-53 (264)
191 TIGR01138 cysM cysteine syntha 93.8 1.1 2.4E-05 38.3 11.1 58 172-229 52-111 (290)
192 COG0334 GdhA Glutamate dehydro 93.7 0.45 9.7E-06 42.5 8.6 59 155-214 182-241 (411)
193 PRK08261 fabG 3-ketoacyl-(acyl 93.7 0.11 2.3E-06 47.3 5.0 68 173-243 28-101 (450)
194 PF13460 NAD_binding_10: NADH( 93.7 0.29 6.3E-06 38.3 7.0 36 182-218 1-37 (183)
195 PRK06180 short chain dehydroge 93.7 0.47 1E-05 39.9 8.6 44 178-222 3-47 (277)
196 PRK07326 short chain dehydroge 93.7 0.58 1.3E-05 38.1 8.9 41 178-219 5-46 (237)
197 PRK11873 arsM arsenite S-adeno 93.7 0.2 4.2E-06 42.4 6.2 48 173-221 72-120 (272)
198 PRK07890 short chain dehydroge 93.7 0.55 1.2E-05 38.8 8.9 42 177-219 3-45 (258)
199 PRK06463 fabG 3-ketoacyl-(acyl 93.6 0.59 1.3E-05 38.7 9.0 46 178-224 6-53 (255)
200 PRK06101 short chain dehydroge 93.6 0.47 1E-05 39.0 8.3 42 180-222 2-44 (240)
201 PF02353 CMAS: Mycolic acid cy 93.6 0.15 3.2E-06 43.4 5.3 49 170-220 54-102 (273)
202 PRK12749 quinate/shikimate deh 93.4 0.25 5.3E-06 42.4 6.4 36 178-213 123-158 (288)
203 PRK08339 short chain dehydroge 93.4 0.27 5.9E-06 41.2 6.7 41 178-219 7-48 (263)
204 PRK12548 shikimate 5-dehydroge 93.4 0.29 6.3E-06 41.9 6.8 37 177-213 124-160 (289)
205 PRK06953 short chain dehydroge 93.3 0.55 1.2E-05 38.0 8.2 45 180-225 2-47 (222)
206 PRK09072 short chain dehydroge 93.3 0.65 1.4E-05 38.6 8.8 42 178-220 4-46 (263)
207 PRK07774 short chain dehydroge 93.3 0.71 1.5E-05 37.9 8.9 41 178-219 5-46 (250)
208 PRK08265 short chain dehydroge 93.3 0.7 1.5E-05 38.5 8.9 45 178-223 5-51 (261)
209 PRK07231 fabG 3-ketoacyl-(acyl 93.2 0.31 6.6E-06 40.1 6.6 41 178-219 4-45 (251)
210 PLN03013 cysteine synthase 93.2 1.1 2.4E-05 40.6 10.5 58 172-229 167-227 (429)
211 PRK08217 fabG 3-ketoacyl-(acyl 93.2 0.33 7.1E-06 39.9 6.8 41 178-219 4-45 (253)
212 PRK07523 gluconate 5-dehydroge 93.2 0.32 7E-06 40.3 6.7 40 178-218 9-49 (255)
213 PF00106 adh_short: short chai 93.2 0.57 1.2E-05 35.9 7.7 33 180-212 1-34 (167)
214 PRK07035 short chain dehydroge 93.1 0.72 1.6E-05 38.0 8.7 41 178-219 7-48 (252)
215 TIGR01832 kduD 2-deoxy-D-gluco 93.0 1.2 2.6E-05 36.5 9.9 35 178-213 4-39 (248)
216 COG1748 LYS9 Saccharopine dehy 93.0 0.47 1E-05 42.3 7.7 44 180-223 2-45 (389)
217 PRK06198 short chain dehydroge 93.0 0.9 1.9E-05 37.6 9.1 40 178-217 5-45 (260)
218 cd05211 NAD_bind_Glu_Leu_Phe_V 92.9 0.38 8.2E-06 39.4 6.6 47 177-223 21-77 (217)
219 KOG0725 Reductases with broad 92.9 0.62 1.3E-05 39.5 8.1 43 177-220 6-49 (270)
220 PRK08703 short chain dehydroge 92.9 0.36 7.9E-06 39.5 6.5 41 178-219 5-46 (239)
221 PRK07062 short chain dehydroge 92.9 0.37 8E-06 40.2 6.6 41 178-219 7-48 (265)
222 cd01065 NAD_bind_Shikimate_DH 92.8 0.85 1.8E-05 34.7 8.2 55 170-224 9-65 (155)
223 PRK07576 short chain dehydroge 92.8 0.4 8.6E-06 40.1 6.8 40 178-218 8-48 (264)
224 PRK08628 short chain dehydroge 92.8 0.72 1.6E-05 38.2 8.3 43 178-221 6-49 (258)
225 PRK07454 short chain dehydroge 92.8 1.1 2.4E-05 36.7 9.3 42 177-219 4-46 (241)
226 PRK05653 fabG 3-ketoacyl-(acyl 92.8 1.2 2.6E-05 36.2 9.6 40 178-218 4-44 (246)
227 PRK07024 short chain dehydroge 92.8 0.94 2E-05 37.6 9.0 41 179-220 2-43 (257)
228 TIGR01139 cysK cysteine syntha 92.8 2 4.3E-05 36.9 11.1 59 172-230 50-110 (298)
229 PRK06505 enoyl-(acyl carrier p 92.7 1 2.2E-05 37.9 9.3 35 178-213 6-43 (271)
230 PLN02565 cysteine synthase 92.7 1.6 3.4E-05 38.1 10.5 55 174-228 61-118 (322)
231 PLN02780 ketoreductase/ oxidor 92.7 0.35 7.6E-06 42.0 6.5 41 178-219 52-93 (320)
232 PRK09291 short chain dehydroge 92.7 0.4 8.8E-06 39.6 6.7 40 179-219 2-42 (257)
233 cd01562 Thr-dehyd Threonine de 92.7 1.1 2.4E-05 38.4 9.6 66 179-245 65-132 (304)
234 PRK07533 enoyl-(acyl carrier p 92.7 1.2 2.5E-05 37.2 9.4 36 178-214 9-47 (258)
235 PRK12939 short chain dehydroge 92.7 1.2 2.6E-05 36.4 9.4 41 178-219 6-47 (250)
236 PLN02556 cysteine synthase/L-3 92.7 1.8 3.8E-05 38.5 10.9 58 172-229 103-163 (368)
237 COG2230 Cfa Cyclopropane fatty 92.7 0.63 1.4E-05 39.6 7.6 53 171-225 65-121 (283)
238 PRK07067 sorbitol dehydrogenas 92.6 0.94 2E-05 37.5 8.8 43 178-221 5-48 (257)
239 PLN03209 translocon at the inn 92.6 0.44 9.5E-06 44.7 7.1 46 173-219 74-120 (576)
240 TIGR01136 cysKM cysteine synth 92.6 2.2 4.8E-05 36.6 11.2 58 172-229 51-110 (299)
241 PRK06500 short chain dehydroge 92.5 1.2 2.6E-05 36.4 9.3 46 178-224 5-52 (249)
242 PTZ00079 NADP-specific glutama 92.5 0.69 1.5E-05 42.1 8.1 35 177-212 235-270 (454)
243 PRK08213 gluconate 5-dehydroge 92.5 0.46 1E-05 39.4 6.8 41 178-219 11-52 (259)
244 PRK06482 short chain dehydroge 92.5 1.1 2.3E-05 37.6 9.1 41 180-221 3-44 (276)
245 TIGR01318 gltD_gamma_fam gluta 92.5 0.46 1E-05 43.6 7.2 53 177-230 139-212 (467)
246 PRK07063 short chain dehydroge 92.5 0.46 9.9E-06 39.5 6.7 41 178-219 6-47 (260)
247 TIGR00406 prmA ribosomal prote 92.5 1.3 2.7E-05 38.0 9.5 44 176-221 157-200 (288)
248 PRK08226 short chain dehydroge 92.5 1 2.2E-05 37.4 8.8 41 178-219 5-46 (263)
249 PRK10538 malonic semialdehyde 92.4 1.1 2.4E-05 37.0 8.9 40 181-221 2-42 (248)
250 TIGR01963 PHB_DH 3-hydroxybuty 92.4 0.95 2.1E-05 37.2 8.5 41 179-220 1-42 (255)
251 CHL00194 ycf39 Ycf39; Provisio 92.4 0.62 1.4E-05 40.2 7.6 42 181-223 2-44 (317)
252 cd01078 NAD_bind_H4MPT_DH NADP 92.4 0.88 1.9E-05 36.3 7.9 42 178-220 27-69 (194)
253 PRK09186 flagellin modificatio 92.3 0.47 1E-05 39.1 6.6 41 178-219 3-44 (256)
254 PRK07478 short chain dehydroge 92.3 0.49 1.1E-05 39.2 6.7 41 178-219 5-46 (254)
255 PLN02253 xanthoxin dehydrogena 92.3 1.1 2.3E-05 37.8 8.8 40 178-218 17-57 (280)
256 PRK06914 short chain dehydroge 92.3 1.1 2.4E-05 37.6 8.9 40 179-219 3-43 (280)
257 PRK06079 enoyl-(acyl carrier p 92.3 1 2.2E-05 37.4 8.5 44 178-222 6-52 (252)
258 KOG1209 1-Acyl dihydroxyaceton 92.3 0.41 8.9E-06 39.0 5.7 55 177-232 5-63 (289)
259 PRK08862 short chain dehydroge 92.2 1.4 3E-05 36.2 9.2 41 178-219 4-45 (227)
260 PRK06125 short chain dehydroge 92.2 0.51 1.1E-05 39.2 6.7 41 178-219 6-47 (259)
261 PRK05884 short chain dehydroge 92.2 1.1 2.4E-05 36.5 8.6 44 181-225 2-47 (223)
262 PRK10669 putative cation:proto 92.2 0.52 1.1E-05 44.2 7.3 47 180-227 418-464 (558)
263 PRK06196 oxidoreductase; Provi 92.2 1.3 2.8E-05 38.1 9.3 41 178-219 25-66 (315)
264 cd05311 NAD_bind_2_malic_enz N 92.1 0.76 1.7E-05 37.9 7.5 43 170-212 15-60 (226)
265 PRK12384 sorbitol-6-phosphate 92.1 1.4 3E-05 36.5 9.2 40 179-219 2-42 (259)
266 PRK12823 benD 1,6-dihydroxycyc 92.1 0.99 2.1E-05 37.4 8.3 42 178-220 7-49 (260)
267 PRK06603 enoyl-(acyl carrier p 92.1 1.4 3.1E-05 36.7 9.3 35 178-213 7-44 (260)
268 cd06448 L-Ser-dehyd Serine deh 92.1 1.3 2.9E-05 38.4 9.2 53 177-229 49-103 (316)
269 PRK00377 cbiT cobalt-precorrin 92.1 0.65 1.4E-05 37.3 6.9 49 171-220 33-82 (198)
270 PRK06172 short chain dehydroge 92.0 0.56 1.2E-05 38.7 6.7 39 178-217 6-45 (253)
271 PRK10717 cysteine synthase A; 92.0 3.2 6.9E-05 36.2 11.6 58 172-229 57-116 (330)
272 PF11017 DUF2855: Protein of u 92.0 3 6.6E-05 36.1 11.0 143 80-232 39-191 (314)
273 PRK13394 3-hydroxybutyrate deh 91.9 0.58 1.2E-05 38.7 6.7 40 178-218 6-46 (262)
274 PRK05854 short chain dehydroge 91.9 0.57 1.2E-05 40.4 6.8 40 178-218 13-53 (313)
275 PRK07109 short chain dehydroge 91.9 0.59 1.3E-05 40.8 6.9 41 178-219 7-48 (334)
276 PRK07904 short chain dehydroge 91.9 1.6 3.4E-05 36.3 9.2 39 176-215 5-45 (253)
277 PRK06194 hypothetical protein; 91.8 0.58 1.3E-05 39.5 6.7 41 178-219 5-46 (287)
278 PRK08264 short chain dehydroge 91.8 0.81 1.7E-05 37.3 7.3 40 178-217 5-45 (238)
279 PRK06124 gluconate 5-dehydroge 91.8 0.63 1.4E-05 38.5 6.8 40 178-218 10-50 (256)
280 PRK12429 3-hydroxybutyrate deh 91.8 0.62 1.3E-05 38.4 6.7 41 178-219 3-44 (258)
281 PRK06483 dihydromonapterin red 91.8 1.5 3.3E-05 35.7 9.0 45 179-224 2-48 (236)
282 PRK08198 threonine dehydratase 91.8 2.2 4.8E-05 38.3 10.6 51 179-229 70-122 (404)
283 TIGR02035 D_Ser_am_lyase D-ser 91.7 1.7 3.7E-05 39.5 9.8 64 181-245 153-219 (431)
284 TIGR03206 benzo_BadH 2-hydroxy 91.7 1.8 3.8E-05 35.5 9.4 41 178-219 2-43 (250)
285 PRK08945 putative oxoacyl-(acy 91.7 0.63 1.4E-05 38.3 6.7 42 176-218 9-51 (247)
286 PRK05717 oxidoreductase; Valid 91.7 1.8 3.9E-05 35.8 9.4 45 178-223 9-55 (255)
287 PRK08589 short chain dehydroge 91.7 1.6 3.5E-05 36.6 9.2 35 178-213 5-40 (272)
288 PF00670 AdoHcyase_NAD: S-aden 91.6 0.96 2.1E-05 35.2 7.0 45 175-220 19-63 (162)
289 PRK05876 short chain dehydroge 91.6 0.65 1.4E-05 39.2 6.7 40 178-218 5-45 (275)
290 PRK09242 tropinone reductase; 91.5 0.7 1.5E-05 38.3 6.7 41 178-219 8-49 (257)
291 PRK08085 gluconate 5-dehydroge 91.5 0.7 1.5E-05 38.2 6.7 40 178-218 8-48 (254)
292 PRK05875 short chain dehydroge 91.5 1.9 4.2E-05 36.0 9.5 40 178-218 6-46 (276)
293 PRK08251 short chain dehydroge 91.4 1.5 3.3E-05 35.9 8.6 40 179-219 2-42 (248)
294 PRK06181 short chain dehydroge 91.4 0.69 1.5E-05 38.4 6.6 39 179-218 1-40 (263)
295 PRK08643 acetoin reductase; Va 91.4 0.69 1.5E-05 38.2 6.6 40 179-219 2-42 (256)
296 PRK06179 short chain dehydroge 91.4 0.94 2E-05 37.8 7.4 39 178-217 3-42 (270)
297 PRK07856 short chain dehydroge 91.4 1.2 2.6E-05 36.8 7.9 37 178-215 5-42 (252)
298 PF12847 Methyltransf_18: Meth 91.3 0.72 1.6E-05 32.8 5.8 42 178-221 1-43 (112)
299 PRK12809 putative oxidoreducta 91.3 0.48 1E-05 45.3 6.1 53 178-231 309-382 (639)
300 PRK07453 protochlorophyllide o 91.3 0.73 1.6E-05 39.8 6.8 41 178-219 5-46 (322)
301 PF01113 DapB_N: Dihydrodipico 91.2 1 2.3E-05 33.3 6.7 51 181-232 2-76 (124)
302 PRK07074 short chain dehydroge 91.2 2 4.3E-05 35.5 9.2 40 179-219 2-42 (257)
303 PRK08246 threonine dehydratase 91.2 2.5 5.4E-05 36.6 10.0 52 178-229 67-120 (310)
304 PRK07832 short chain dehydroge 91.1 2.2 4.8E-05 35.7 9.5 38 180-218 1-39 (272)
305 cd01561 CBS_like CBS_like: Thi 91.1 3 6.4E-05 35.6 10.3 54 176-229 50-105 (291)
306 KOG1201 Hydroxysteroid 17-beta 91.1 1 2.2E-05 38.5 7.1 62 177-240 36-104 (300)
307 PRK12481 2-deoxy-D-gluconate 3 91.1 2.4 5.1E-05 35.1 9.5 46 178-224 7-55 (251)
308 PRK06114 short chain dehydroge 91.1 1.9 4E-05 35.7 8.9 35 178-213 7-42 (254)
309 PRK12769 putative oxidoreducta 91.1 0.66 1.4E-05 44.5 6.8 51 177-228 325-396 (654)
310 PRK08303 short chain dehydroge 91.1 1.9 4.2E-05 37.1 9.2 34 178-212 7-41 (305)
311 PRK08277 D-mannonate oxidoredu 91.1 2.1 4.6E-05 35.8 9.3 41 178-219 9-50 (278)
312 PF07991 IlvN: Acetohydroxy ac 91.1 0.85 1.8E-05 35.5 6.1 47 178-224 3-49 (165)
313 PRK13940 glutamyl-tRNA reducta 91.0 1.5 3.2E-05 39.7 8.6 47 177-223 179-226 (414)
314 PRK08639 threonine dehydratase 91.0 1.9 4.2E-05 39.0 9.4 46 180-225 74-121 (420)
315 PRK01438 murD UDP-N-acetylmura 90.9 1 2.2E-05 41.4 7.7 50 177-227 14-68 (480)
316 PRK08813 threonine dehydratase 90.9 2.2 4.8E-05 37.6 9.4 47 183-229 84-133 (349)
317 PRK06197 short chain dehydroge 90.9 0.74 1.6E-05 39.4 6.4 39 178-217 15-54 (306)
318 PRK06352 threonine synthase; V 90.9 2.6 5.7E-05 37.1 10.0 64 181-245 76-143 (351)
319 PF02737 3HCDH_N: 3-hydroxyacy 90.8 0.92 2E-05 36.0 6.4 38 181-219 1-38 (180)
320 COG0569 TrkA K+ transport syst 90.8 1.1 2.4E-05 36.9 7.1 37 181-218 2-38 (225)
321 PRK12826 3-ketoacyl-(acyl-carr 90.8 0.82 1.8E-05 37.4 6.4 38 178-216 5-43 (251)
322 PRK06138 short chain dehydroge 90.7 0.85 1.8E-05 37.5 6.5 40 178-218 4-44 (252)
323 PF02558 ApbA: Ketopantoate re 90.7 0.73 1.6E-05 35.0 5.7 43 182-226 1-43 (151)
324 PRK08415 enoyl-(acyl carrier p 90.7 2.6 5.7E-05 35.5 9.6 35 178-213 4-41 (274)
325 PLN02686 cinnamoyl-CoA reducta 90.7 1.2 2.7E-05 39.3 7.8 45 176-221 50-95 (367)
326 PRK08159 enoyl-(acyl carrier p 90.7 2.4 5.2E-05 35.7 9.3 36 177-213 8-46 (272)
327 PRK12936 3-ketoacyl-(acyl-carr 90.6 2.3 4.9E-05 34.7 8.9 41 178-219 5-46 (245)
328 TIGR02469 CbiT precorrin-6Y C5 90.6 1.5 3.2E-05 31.6 7.0 48 172-220 13-60 (124)
329 PRK06484 short chain dehydroge 90.6 1.7 3.6E-05 40.2 8.9 46 178-224 4-51 (520)
330 PRK08267 short chain dehydroge 90.5 2.4 5.1E-05 35.1 9.0 41 180-221 2-43 (260)
331 PRK07806 short chain dehydroge 90.5 3.1 6.7E-05 34.1 9.6 35 178-213 5-40 (248)
332 TIGR02079 THD1 threonine dehyd 90.4 2.5 5.4E-05 38.2 9.6 43 183-225 67-112 (409)
333 TIGR00507 aroE shikimate 5-deh 90.4 1 2.2E-05 38.1 6.7 43 176-219 114-156 (270)
334 PRK11705 cyclopropane fatty ac 90.4 1.2 2.6E-05 39.9 7.4 49 172-222 161-209 (383)
335 cd00640 Trp-synth-beta_II Tryp 90.3 3.4 7.4E-05 34.1 9.8 67 178-245 49-117 (244)
336 cd06447 D-Ser-dehyd D-Serine d 90.3 3.3 7.2E-05 37.3 10.2 63 182-245 136-201 (404)
337 PLN02970 serine racemase 90.3 2.6 5.6E-05 36.8 9.3 50 180-229 76-127 (328)
338 PRK08263 short chain dehydroge 90.3 2.1 4.5E-05 35.9 8.6 42 179-221 3-45 (275)
339 PRK07476 eutB threonine dehydr 90.3 2.3 5.1E-05 36.9 9.0 62 183-245 70-134 (322)
340 PRK07666 fabG 3-ketoacyl-(acyl 90.3 1.1 2.4E-05 36.5 6.8 40 178-218 6-46 (239)
341 PF05368 NmrA: NmrA-like famil 90.3 1.2 2.6E-05 36.4 6.9 45 182-227 1-48 (233)
342 PRK06720 hypothetical protein; 90.3 2.8 6.1E-05 32.8 8.7 39 178-217 15-54 (169)
343 PF02670 DXP_reductoisom: 1-de 90.2 2.1 4.5E-05 32.1 7.4 49 182-231 1-55 (129)
344 TIGR01127 ilvA_1Cterm threonin 90.2 3.1 6.7E-05 37.0 9.9 49 181-229 50-100 (380)
345 PRK08340 glucose-1-dehydrogena 90.1 3.2 6.9E-05 34.4 9.5 38 181-219 2-40 (259)
346 PLN02520 bifunctional 3-dehydr 90.0 0.93 2E-05 42.3 6.7 42 178-220 378-419 (529)
347 PRK06398 aldose dehydrogenase; 90.0 1.3 2.9E-05 36.8 7.1 36 178-214 5-41 (258)
348 PRK01390 murD UDP-N-acetylmura 90.0 0.86 1.9E-05 41.6 6.4 47 178-225 8-54 (460)
349 PRK06935 2-deoxy-D-gluconate 3 90.0 3.1 6.7E-05 34.4 9.3 34 178-212 14-48 (258)
350 PRK06719 precorrin-2 dehydroge 89.9 2.8 6.1E-05 32.4 8.3 32 178-210 12-43 (157)
351 PRK08690 enoyl-(acyl carrier p 89.9 3.1 6.6E-05 34.7 9.2 35 178-213 5-42 (261)
352 PF06325 PrmA: Ribosomal prote 89.9 1.2 2.5E-05 38.4 6.6 75 143-221 128-202 (295)
353 PRK14031 glutamate dehydrogena 89.8 1.2 2.6E-05 40.5 6.9 40 170-210 218-258 (444)
354 cd01563 Thr-synth_1 Threonine 89.8 3.6 7.9E-05 35.6 9.9 50 179-228 70-121 (324)
355 PF03721 UDPG_MGDP_dh_N: UDP-g 89.8 0.89 1.9E-05 36.2 5.5 57 181-244 2-58 (185)
356 PRK03562 glutathione-regulated 89.7 1.2 2.5E-05 42.5 7.2 47 179-226 400-446 (621)
357 PRK08642 fabG 3-ketoacyl-(acyl 89.7 2.8 6.1E-05 34.3 8.8 41 178-219 4-46 (253)
358 PRK08638 threonine dehydratase 89.6 3.4 7.3E-05 36.2 9.5 65 180-245 76-142 (333)
359 PRK14030 glutamate dehydrogena 89.6 1.4 2.9E-05 40.2 7.1 53 156-209 204-257 (445)
360 TIGR01137 cysta_beta cystathio 89.6 5.1 0.00011 36.4 11.1 58 172-229 55-114 (454)
361 PRK07048 serine/threonine dehy 89.5 3.1 6.7E-05 36.1 9.2 50 180-229 73-124 (321)
362 PRK12938 acetyacetyl-CoA reduc 89.4 3 6.5E-05 34.1 8.7 31 178-209 2-33 (246)
363 PRK03659 glutathione-regulated 89.4 1.2 2.7E-05 42.2 7.1 46 180-226 401-446 (601)
364 PRK06484 short chain dehydroge 89.4 3.1 6.6E-05 38.5 9.6 47 177-224 267-315 (520)
365 PRK07102 short chain dehydroge 89.4 1.3 2.8E-05 36.3 6.5 38 180-218 2-40 (243)
366 PRK06721 threonine synthase; R 89.3 3.8 8.3E-05 36.1 9.7 50 180-229 75-128 (352)
367 PLN03139 formate dehydrogenase 89.3 0.93 2E-05 40.5 5.8 46 178-224 198-243 (386)
368 PRK07097 gluconate 5-dehydroge 89.3 1.4 3E-05 36.8 6.7 40 178-218 9-49 (265)
369 PRK07984 enoyl-(acyl carrier p 89.3 3.8 8.2E-05 34.3 9.3 35 178-213 5-42 (262)
370 cd05313 NAD_bind_2_Glu_DH NAD( 89.3 1.5 3.3E-05 36.8 6.8 34 177-211 36-69 (254)
371 COG2242 CobL Precorrin-6B meth 89.3 2.4 5.3E-05 33.8 7.5 57 171-228 27-87 (187)
372 PLN00011 cysteine synthase 89.2 6.7 0.00015 34.1 11.1 59 171-229 60-121 (323)
373 PRK07574 formate dehydrogenase 89.1 1.1 2.3E-05 40.1 6.1 35 178-213 191-225 (385)
374 PRK00141 murD UDP-N-acetylmura 89.1 1.6 3.5E-05 40.1 7.5 49 177-226 13-62 (473)
375 PRK02991 D-serine dehydratase; 89.1 2.7 5.8E-05 38.3 8.7 63 182-245 159-224 (441)
376 PRK08063 enoyl-(acyl carrier p 89.1 2.6 5.5E-05 34.6 8.1 38 178-216 3-42 (250)
377 PRK07409 threonine synthase; V 89.0 3.9 8.5E-05 36.0 9.6 63 181-244 79-145 (353)
378 COG1171 IlvA Threonine dehydra 89.0 3.7 8E-05 36.0 9.1 79 167-246 60-142 (347)
379 PRK07775 short chain dehydroge 89.0 4.2 9E-05 34.1 9.5 39 178-217 9-48 (274)
380 PRK06113 7-alpha-hydroxysteroi 89.0 1.5 3.3E-05 36.2 6.7 40 178-218 10-50 (255)
381 PRK06110 hypothetical protein; 88.9 5.1 0.00011 34.8 10.1 48 182-229 72-122 (322)
382 PRK05638 threonine synthase; V 88.9 3.7 8E-05 37.4 9.5 65 179-244 112-178 (442)
383 COG1052 LdhA Lactate dehydroge 88.8 1.1 2.3E-05 39.2 5.8 47 178-226 145-191 (324)
384 COG0569 TrkA K+ transport syst 88.8 4.4 9.6E-05 33.3 9.2 74 167-243 55-130 (225)
385 PRK14192 bifunctional 5,10-met 88.8 1.9 4.2E-05 36.8 7.2 59 171-232 150-211 (283)
386 COG0702 Predicted nucleoside-d 88.7 1.6 3.5E-05 36.2 6.7 46 181-228 2-48 (275)
387 PRK08329 threonine synthase; V 88.7 4.3 9.3E-05 35.7 9.6 50 180-229 105-156 (347)
388 COG0686 Ald Alanine dehydrogen 88.7 1 2.2E-05 38.9 5.3 65 178-243 167-231 (371)
389 PRK06940 short chain dehydroge 88.7 1.5 3.2E-05 37.0 6.5 39 179-219 2-40 (275)
390 PRK06522 2-dehydropantoate 2-r 88.6 1.6 3.4E-05 37.3 6.7 43 181-224 2-44 (304)
391 PRK06381 threonine synthase; V 88.6 5 0.00011 34.7 9.8 53 179-231 62-117 (319)
392 PRK14967 putative methyltransf 88.5 2.5 5.4E-05 34.6 7.5 49 171-221 29-77 (223)
393 PRK13943 protein-L-isoaspartat 88.5 2.8 6E-05 36.6 8.1 58 170-228 72-134 (322)
394 PRK06128 oxidoreductase; Provi 88.4 3.6 7.9E-05 35.0 8.8 33 178-211 54-87 (300)
395 PRK09224 threonine dehydratase 88.4 3.8 8.2E-05 38.1 9.4 48 182-229 70-120 (504)
396 PRK12367 short chain dehydroge 88.4 2.7 5.8E-05 34.9 7.7 35 178-213 13-48 (245)
397 PRK12743 oxidoreductase; Provi 88.3 4.3 9.4E-05 33.5 9.0 36 179-215 2-39 (256)
398 PRK06924 short chain dehydroge 88.3 3.1 6.8E-05 34.1 8.1 39 180-219 2-42 (251)
399 PRK07791 short chain dehydroge 88.3 4.4 9.5E-05 34.3 9.2 35 177-212 4-39 (286)
400 cd01080 NAD_bind_m-THF_DH_Cycl 88.2 2.4 5.2E-05 33.3 6.9 54 176-232 41-96 (168)
401 PRK08261 fabG 3-ketoacyl-(acyl 88.2 4 8.6E-05 37.1 9.3 34 178-212 209-243 (450)
402 PRK13656 trans-2-enoyl-CoA red 88.1 4.7 0.0001 36.1 9.3 32 177-210 39-73 (398)
403 PRK07577 short chain dehydroge 88.1 2.8 6.2E-05 33.9 7.7 37 178-215 2-39 (234)
404 PRK06523 short chain dehydroge 88.1 1.1 2.5E-05 37.0 5.4 35 178-213 8-43 (260)
405 TIGR01124 ilvA_2Cterm threonin 88.1 4 8.7E-05 37.8 9.3 62 183-245 68-132 (499)
406 PLN00203 glutamyl-tRNA reducta 88.0 1.4 3.1E-05 41.0 6.3 43 179-221 266-308 (519)
407 KOG1502 Flavonol reductase/cin 88.0 1.4 3.1E-05 38.3 5.8 45 178-223 5-53 (327)
408 PLN02477 glutamate dehydrogena 87.8 2.1 4.6E-05 38.6 7.1 40 169-209 195-235 (410)
409 TIGR01747 diampropi_NH3ly diam 87.8 3.9 8.5E-05 36.5 8.8 64 180-244 94-160 (376)
410 KOG1205 Predicted dehydrogenas 87.8 4.8 0.00011 34.3 8.9 49 177-226 10-63 (282)
411 PRK07424 bifunctional sterol d 87.8 1.7 3.7E-05 39.2 6.5 39 178-217 177-216 (406)
412 PRK08416 7-alpha-hydroxysteroi 87.8 1.7 3.6E-05 36.2 6.2 38 178-216 7-46 (260)
413 PRK09496 trkA potassium transp 87.7 2 4.4E-05 38.9 7.1 43 181-224 2-45 (453)
414 PLN02928 oxidoreductase family 87.7 1.2 2.5E-05 39.3 5.3 34 178-212 158-191 (347)
415 PLN02356 phosphateglycerate ki 87.7 3 6.6E-05 37.7 8.0 56 174-229 99-156 (423)
416 PRK02472 murD UDP-N-acetylmura 87.7 2.2 4.9E-05 38.6 7.4 47 178-225 4-54 (447)
417 PRK07502 cyclohexadienyl dehyd 87.6 1.9 4.1E-05 37.1 6.6 45 180-224 7-52 (307)
418 PRK08526 threonine dehydratase 87.6 5.3 0.00011 36.0 9.5 62 183-245 71-135 (403)
419 PRK08993 2-deoxy-D-gluconate 3 87.6 3 6.5E-05 34.5 7.6 45 178-223 9-56 (253)
420 PF08659 KR: KR domain; Inter 87.5 4.6 9.9E-05 31.8 8.3 45 181-225 2-54 (181)
421 PRK13403 ketol-acid reductoiso 87.5 1.9 4E-05 37.6 6.3 47 177-224 14-60 (335)
422 PRK07985 oxidoreductase; Provi 87.5 3.7 8E-05 35.0 8.3 33 178-211 48-81 (294)
423 PLN02986 cinnamyl-alcohol dehy 87.5 1.5 3.3E-05 37.7 5.9 38 177-215 3-41 (322)
424 PF13241 NAD_binding_7: Putati 87.5 0.76 1.6E-05 32.8 3.4 67 178-246 6-82 (103)
425 PRK08278 short chain dehydroge 87.4 4.2 9.2E-05 34.1 8.5 36 178-214 5-41 (273)
426 PRK08410 2-hydroxyacid dehydro 87.4 1.2 2.6E-05 38.6 5.2 34 178-212 144-177 (311)
427 PF03807 F420_oxidored: NADP o 87.3 2.6 5.6E-05 29.2 6.0 43 181-224 1-48 (96)
428 PF13478 XdhC_C: XdhC Rossmann 87.3 0.68 1.5E-05 35.0 3.2 32 182-214 1-32 (136)
429 TIGR00260 thrC threonine synth 87.3 4.6 0.0001 35.1 8.8 65 180-245 71-139 (328)
430 PRK05565 fabG 3-ketoacyl-(acyl 87.2 2.1 4.6E-05 34.9 6.4 39 179-218 5-45 (247)
431 PRK06608 threonine dehydratase 87.2 5.6 0.00012 34.9 9.3 48 182-229 74-124 (338)
432 PRK06849 hypothetical protein; 87.2 4.8 0.0001 35.8 9.1 67 178-246 3-73 (389)
433 PLN02583 cinnamoyl-CoA reducta 87.2 1.9 4.1E-05 36.8 6.3 34 178-212 5-39 (297)
434 PLN02896 cinnamyl-alcohol dehy 87.1 2.2 4.7E-05 37.4 6.8 40 176-216 7-47 (353)
435 TIGR02991 ectoine_eutB ectoine 87.1 5.4 0.00012 34.6 9.1 61 183-244 70-133 (317)
436 TIGR01470 cysG_Nterm siroheme 87.0 2.3 4.9E-05 34.5 6.3 34 178-212 8-41 (205)
437 KOG1210 Predicted 3-ketosphing 87.0 2.9 6.3E-05 36.1 7.0 50 174-224 28-79 (331)
438 TIGR02964 xanthine_xdhC xanthi 86.8 1.6 3.5E-05 36.5 5.5 39 175-214 96-134 (246)
439 PF01135 PCMT: Protein-L-isoas 86.8 3.2 6.9E-05 33.8 7.1 56 169-225 63-123 (209)
440 PRK13243 glyoxylate reductase; 86.7 2 4.3E-05 37.6 6.2 37 178-215 149-185 (333)
441 PLN00141 Tic62-NAD(P)-related 86.6 2.1 4.6E-05 35.4 6.2 39 178-217 16-55 (251)
442 PRK09414 glutamate dehydrogena 86.5 3 6.6E-05 38.0 7.4 53 156-209 208-261 (445)
443 PRK05557 fabG 3-ketoacyl-(acyl 86.4 2.4 5.2E-05 34.5 6.3 35 178-213 4-39 (248)
444 PRK08197 threonine synthase; V 86.4 7.1 0.00015 35.0 9.8 65 179-244 126-193 (394)
445 PRK06035 3-hydroxyacyl-CoA deh 86.4 2.4 5.2E-05 36.2 6.5 38 180-218 4-41 (291)
446 PRK07417 arogenate dehydrogena 86.4 2.4 5.2E-05 36.0 6.4 43 181-224 2-44 (279)
447 PRK08936 glucose-1-dehydrogena 86.3 2.4 5.2E-05 35.2 6.3 33 178-211 6-39 (261)
448 PRK09135 pteridine reductase; 86.3 2.8 6E-05 34.2 6.7 34 178-212 5-39 (249)
449 TIGR01289 LPOR light-dependent 86.3 2.5 5.5E-05 36.4 6.6 40 179-219 3-44 (314)
450 PLN02778 3,5-epimerase/4-reduc 86.2 3.3 7.1E-05 35.5 7.2 54 178-232 8-66 (298)
451 TIGR03528 2_3_DAP_am_ly diamin 86.1 5.5 0.00012 35.8 8.8 63 182-245 115-180 (396)
452 PRK06382 threonine dehydratase 86.1 7.5 0.00016 35.0 9.7 48 182-229 76-125 (406)
453 TIGR03466 HpnA hopanoid-associ 86.1 1.6 3.4E-05 37.4 5.3 35 181-216 2-37 (328)
454 PRK07591 threonine synthase; V 86.1 7.1 0.00015 35.4 9.6 65 181-246 138-205 (421)
455 PRK12746 short chain dehydroge 86.0 2.3 5E-05 35.0 6.1 38 178-216 5-44 (254)
456 PRK06701 short chain dehydroge 86.0 6.5 0.00014 33.4 9.0 37 176-213 43-80 (290)
457 COG0111 SerA Phosphoglycerate 86.0 1.6 3.4E-05 38.2 5.1 32 179-211 142-173 (324)
458 PRK06947 glucose-1-dehydrogena 85.9 4.9 0.00011 32.9 8.0 36 180-216 3-40 (248)
459 PRK12937 short chain dehydroge 85.9 2.4 5.3E-05 34.5 6.1 34 177-211 3-37 (245)
460 PF01210 NAD_Gly3P_dh_N: NAD-d 85.9 2.8 6E-05 32.3 6.0 41 181-222 1-41 (157)
461 PF00899 ThiF: ThiF family; I 85.9 2.1 4.5E-05 32.0 5.2 34 179-212 2-35 (135)
462 TIGR02415 23BDH acetoin reduct 85.8 2.8 6.1E-05 34.4 6.5 36 180-216 1-37 (254)
463 PRK06487 glycerate dehydrogena 85.7 1.6 3.4E-05 38.0 5.1 34 178-212 147-180 (317)
464 COG0281 SfcA Malic enzyme [Ene 85.7 2.9 6.2E-05 37.5 6.6 65 148-212 167-234 (432)
465 COG0373 HemA Glutamyl-tRNA red 85.6 3.3 7.1E-05 37.3 7.0 48 177-224 176-224 (414)
466 PRK13984 putative oxidoreducta 85.5 3.2 6.9E-05 39.4 7.4 53 176-229 280-353 (604)
467 KOG2304 3-hydroxyacyl-CoA dehy 85.5 1.9 4.2E-05 35.5 5.0 46 175-221 7-52 (298)
468 PRK05650 short chain dehydroge 85.5 2.8 6E-05 35.0 6.4 37 180-217 1-38 (270)
469 PRK09260 3-hydroxybutyryl-CoA 85.4 2.7 5.8E-05 35.8 6.3 40 180-220 2-41 (288)
470 PRK07792 fabG 3-ketoacyl-(acyl 85.4 7.5 0.00016 33.3 9.1 34 178-212 11-45 (306)
471 TIGR02622 CDP_4_6_dhtase CDP-g 85.4 2.1 4.5E-05 37.4 5.7 37 178-215 3-40 (349)
472 PRK12483 threonine dehydratase 85.3 5 0.00011 37.4 8.3 62 183-245 88-152 (521)
473 KOG1481 Cysteine synthase [Ami 85.3 2 4.4E-05 36.5 5.2 74 172-246 93-172 (391)
474 cd06449 ACCD Aminocyclopropane 85.3 6.3 0.00014 33.9 8.6 52 178-229 50-114 (307)
475 PRK08594 enoyl-(acyl carrier p 85.3 6.9 0.00015 32.5 8.6 34 178-212 6-42 (257)
476 TIGR02632 RhaD_aldol-ADH rhamn 85.2 2.6 5.7E-05 40.6 6.8 41 178-219 413-454 (676)
477 PRK07340 ornithine cyclodeamin 85.2 5.4 0.00012 34.4 8.1 48 172-219 118-166 (304)
478 PRK06997 enoyl-(acyl carrier p 85.2 8.3 0.00018 32.1 9.1 32 178-210 5-39 (260)
479 PRK08293 3-hydroxybutyryl-CoA 85.2 3 6.5E-05 35.5 6.5 40 180-220 4-43 (287)
480 PRK07370 enoyl-(acyl carrier p 85.2 5.9 0.00013 32.9 8.2 32 178-210 5-39 (258)
481 PRK06932 glycerate dehydrogena 85.1 1.7 3.8E-05 37.7 5.0 34 178-212 146-179 (314)
482 PF03446 NAD_binding_2: NAD bi 85.1 3.7 7.9E-05 31.8 6.4 45 180-225 2-46 (163)
483 PRK12814 putative NADPH-depend 85.0 2.7 5.9E-05 40.3 6.7 35 177-212 191-225 (652)
484 PF00070 Pyr_redox: Pyridine n 85.0 2.8 6E-05 28.1 5.0 31 181-212 1-31 (80)
485 PRK06141 ornithine cyclodeamin 85.0 6.5 0.00014 34.0 8.5 49 172-220 118-167 (314)
486 TIGR02356 adenyl_thiF thiazole 85.0 2.1 4.6E-05 34.5 5.2 35 178-212 20-54 (202)
487 cd05191 NAD_bind_amino_acid_DH 85.0 3.3 7.1E-05 28.3 5.5 35 177-211 21-55 (86)
488 PRK12921 2-dehydropantoate 2-r 84.9 2.6 5.7E-05 35.9 6.1 42 181-224 2-43 (305)
489 PRK01710 murD UDP-N-acetylmura 84.9 3.2 7E-05 37.9 7.0 48 178-226 13-65 (458)
490 TIGR00465 ilvC ketol-acid redu 84.9 2.8 6.1E-05 36.4 6.2 47 178-224 2-48 (314)
491 PRK01368 murD UDP-N-acetylmura 84.9 2 4.3E-05 39.3 5.5 36 176-213 3-38 (454)
492 PRK08206 diaminopropionate amm 84.8 7.3 0.00016 35.0 9.0 47 183-229 119-168 (399)
493 PRK12825 fabG 3-ketoacyl-(acyl 84.8 3.2 6.9E-05 33.7 6.3 35 178-213 5-41 (249)
494 PF00291 PALP: Pyridoxal-phosp 84.8 4.8 0.0001 34.3 7.6 54 178-231 55-110 (306)
495 PRK08328 hypothetical protein; 84.7 2.1 4.5E-05 35.4 5.1 35 178-212 26-60 (231)
496 PF02719 Polysacc_synt_2: Poly 84.7 2.5 5.3E-05 36.3 5.6 40 182-221 1-41 (293)
497 TIGR02355 moeB molybdopterin s 84.7 2.2 4.7E-05 35.5 5.2 34 179-212 24-57 (240)
498 PRK09310 aroDE bifunctional 3- 84.7 3.2 6.9E-05 38.3 6.8 41 178-219 331-371 (477)
499 cd01076 NAD_bind_1_Glu_DH NAD( 84.7 4 8.6E-05 33.7 6.7 33 177-210 29-61 (227)
500 PRK12747 short chain dehydroge 84.7 3.1 6.6E-05 34.3 6.2 37 178-215 3-41 (252)
No 1
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=100.00 E-value=2.7e-48 Score=330.92 Aligned_cols=226 Identities=34% Similarity=0.520 Sum_probs=206.4
Q ss_pred ccceEEEEecCCC-eEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCC
Q 025712 13 NQNMAAWLLGIKT-LKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKS 91 (249)
Q Consensus 13 ~~~~~~~~~~~~~-l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~ 91 (249)
++|+++++.+++. +++.|++.|+|+++||+|+|+|+|+|++|++.++|.... ..+|++||||.+|+|+++|++|+.
T Consensus 2 ~~mkA~~~~~~~~pl~i~e~~~p~p~~~eVlI~v~~~GVChsDlH~~~G~~~~---~~~P~ipGHEivG~V~~vG~~V~~ 78 (339)
T COG1064 2 MTMKAAVLKKFGQPLEIEEVPVPEPGPGEVLIKVEACGVCHTDLHVAKGDWPV---PKLPLIPGHEIVGTVVEVGEGVTG 78 (339)
T ss_pred cceEEEEEccCCCCceEEeccCCCCCCCeEEEEEEEEeecchhhhhhcCCCCC---CCCCccCCcceEEEEEEecCCCcc
Confidence 5688999988764 999999999999999999999999999999999986432 359999999999999999999999
Q ss_pred CCCCCeEEE-ccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhcccc-chHHHHH
Q 025712 92 LEVGDRVAL-EPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVH 169 (249)
Q Consensus 92 ~~~Gd~V~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-~~~~a~~ 169 (249)
|++||+|.+ +...+|++|.||+.|+.++|++....+. +.+|+|+||+.+++++++++|+++++..||.+. ...|+|+
T Consensus 79 ~k~GDrVgV~~~~~~Cg~C~~C~~G~E~~C~~~~~~gy-~~~GGyaeyv~v~~~~~~~iP~~~d~~~aApllCaGiT~y~ 157 (339)
T COG1064 79 LKVGDRVGVGWLVISCGECEYCRSGNENLCPNQKITGY-TTDGGYAEYVVVPARYVVKIPEGLDLAEAAPLLCAGITTYR 157 (339)
T ss_pred CCCCCEEEecCccCCCCCCccccCcccccCCCccccce-eecCcceeEEEEchHHeEECCCCCChhhhhhhhcCeeeEee
Confidence 999999999 8889999999999999999999666654 489999999999999999999999999999776 4669999
Q ss_pred HHHHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCCCcccHHHHHHHHH
Q 025712 170 ACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGRYKMQWV 245 (249)
Q Consensus 170 ~l~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~ 245 (249)
++...+++||++|+|.|.|++|++++|+|+++|+ +|++++++++|.+++++|||++++|.+ ++++.+.+++..
T Consensus 158 alk~~~~~pG~~V~I~G~GGlGh~avQ~Aka~ga-~Via~~~~~~K~e~a~~lGAd~~i~~~--~~~~~~~~~~~~ 230 (339)
T COG1064 158 ALKKANVKPGKWVAVVGAGGLGHMAVQYAKAMGA-EVIAITRSEEKLELAKKLGADHVINSS--DSDALEAVKEIA 230 (339)
T ss_pred ehhhcCCCCCCEEEEECCcHHHHHHHHHHHHcCC-eEEEEeCChHHHHHHHHhCCcEEEEcC--CchhhHHhHhhC
Confidence 9999999999999999999999999999999998 899999999999999999999999977 377777776643
No 2
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=9e-48 Score=319.64 Aligned_cols=233 Identities=53% Similarity=0.933 Sum_probs=217.8
Q ss_pred cccceEEEEecCCCeEEEEecCCCC-CCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCC
Q 025712 12 KNQNMAAWLLGIKTLKIQPYHLPTL-GPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVK 90 (249)
Q Consensus 12 ~~~~~~~~~~~~~~l~~~~~~~p~~-~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~ 90 (249)
.++|+++++.+++++++.+.|.|++ .|+||+|++++++||.+|++++..++.+.+..+.|+++|||.+|+|+++|++|+
T Consensus 2 ~~~~~A~vl~g~~di~i~~~p~p~i~~p~eVlv~i~a~GICGSDvHy~~~G~ig~~v~k~PmvlGHEssGiV~evG~~Vk 81 (354)
T KOG0024|consen 2 AADNLALVLRGKGDIRIEQRPIPTITDPDEVLVAIKAVGICGSDVHYYTHGRIGDFVVKKPMVLGHESSGIVEEVGDEVK 81 (354)
T ss_pred CcccceeEEEccCceeEeeCCCCCCCCCCEEEEEeeeEEecCccchhhccCCcCccccccccccccccccchhhhccccc
Confidence 4678999999999999999999987 999999999999999999999999888777778999999999999999999999
Q ss_pred CCCCCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhccccchHHHHHH
Q 025712 91 SLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHA 170 (249)
Q Consensus 91 ~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~a~~~ 170 (249)
++++||||++.|...|+.|.+|++|++++|+.+.+......+|++++|+.+++++|+++||+++++++|++.++.+++++
T Consensus 82 ~LkVGDrVaiEpg~~c~~cd~CK~GrYNlCp~m~f~atpp~~G~la~y~~~~~dfc~KLPd~vs~eeGAl~ePLsV~~HA 161 (354)
T KOG0024|consen 82 HLKVGDRVAIEPGLPCRDCDFCKEGRYNLCPHMVFCATPPVDGTLAEYYVHPADFCYKLPDNVSFEEGALIEPLSVGVHA 161 (354)
T ss_pred ccccCCeEEecCCCccccchhhhCcccccCCccccccCCCcCCceEEEEEechHheeeCCCCCchhhcccccchhhhhhh
Confidence 99999999999999999999999999999999998887789999999999999999999999999999999999999999
Q ss_pred HHHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCCCcccHHHHHHHHHH
Q 025712 171 CRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGRYKMQWVQ 246 (249)
Q Consensus 171 l~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~~ 246 (249)
.+++++++|+++||+|+|++|+++...||++|+.+|++++..++|++.+++|||+.+.+..... -.+.+++..+
T Consensus 162 cr~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~Ga~~~~~~~~~~--~~~~~~~~v~ 235 (354)
T KOG0024|consen 162 CRRAGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKFGATVTDPSSHKS--SPQELAELVE 235 (354)
T ss_pred hhhcCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHhCCeEEeeccccc--cHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999998766532 3444444443
No 3
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=100.00 E-value=3e-42 Score=289.00 Aligned_cols=228 Identities=30% Similarity=0.432 Sum_probs=202.7
Q ss_pred cceEEEEecC-CCeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCCC
Q 025712 14 QNMAAWLLGI-KTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSL 92 (249)
Q Consensus 14 ~~~~~~~~~~-~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~ 92 (249)
+++++++..+ ++|+++|+.+++|+++|||||+.++|+|++|...++|.+ +..+|+++|||++|+|+++|+.|+++
T Consensus 2 k~~aAV~~~~~~Pl~i~ei~l~~P~~gEVlVri~AtGVCHTD~~~~~G~~----p~~~P~vLGHEgAGiVe~VG~gVt~v 77 (366)
T COG1062 2 KTRAAVAREAGKPLEIEEVDLDPPRAGEVLVRITATGVCHTDAHTLSGDD----PEGFPAVLGHEGAGIVEAVGEGVTSV 77 (366)
T ss_pred CceEeeeecCCCCeEEEEEecCCCCCCeEEEEEEEeeccccchhhhcCCC----CCCCceecccccccEEEEecCCcccc
Confidence 5788888866 589999999999999999999999999999999988754 34599999999999999999999999
Q ss_pred CCCCeEEEccCcCCCCCccccCCCCCCCcCcccc-------CC-----------CCCC--CceeEEEEecCCceEECCCC
Q 025712 93 EVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFF-------GS-----------PPTN--GSLAHKVVHPAKLCYKLPDN 152 (249)
Q Consensus 93 ~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~-----------~~~~--g~~~~~~~~~~~~~~~ip~~ 152 (249)
+|||+|+..+..+||+|.+|..+.++||..+... ++ .... ++|++|..+++..+++++++
T Consensus 78 kpGDhVI~~f~p~CG~C~~C~sGk~nlC~~~~~~~~kG~m~dGttrls~~~~~~~h~lG~stFa~y~vv~~~s~vki~~~ 157 (366)
T COG1062 78 KPGDHVILLFTPECGQCKFCLSGKPNLCEAIRATQGKGTMPDGTTRLSGNGVPVYHYLGCSTFAEYTVVHEISLVKIDPD 157 (366)
T ss_pred CCCCEEEEcccCCCCCCchhhCCCcccccchhhhcccccccCCceeeecCCcceeeeeccccchhheeecccceEECCCC
Confidence 9999999999999999999999999999743211 11 0122 49999999999999999999
Q ss_pred CChhhhccccc-hHHHHHH-HHHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecC
Q 025712 153 VSLEEGAMCEP-LSVGVHA-CRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKV 230 (249)
Q Consensus 153 ~~~~~aa~~~~-~~~a~~~-l~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~ 230 (249)
.+++.++++.+ ..+.+.+ ++.+++++|+++.|.|.|++|++++|-|+..|++++|+++.+++|++++++|||++++|.
T Consensus 158 ~p~~~a~llGCgV~TG~Gav~nta~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~fGAT~~vn~ 237 (366)
T COG1062 158 APLEKACLLGCGVTTGIGAVVNTAKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKFGATHFVNP 237 (366)
T ss_pred CCccceEEEeeeeccChHHhhhcccCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhcCCceeecc
Confidence 99999998885 5677765 488999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCcccHHHHHHHHHH
Q 025712 231 STDIEMWGRYKMQWVQ 246 (249)
Q Consensus 231 ~~~~~~~~~~~~~~~~ 246 (249)
++.. +..+.+.++|+
T Consensus 238 ~~~~-~vv~~i~~~T~ 252 (366)
T COG1062 238 KEVD-DVVEAIVELTD 252 (366)
T ss_pred hhhh-hHHHHHHHhcC
Confidence 7632 79999998886
No 4
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.7e-41 Score=281.56 Aligned_cols=230 Identities=27% Similarity=0.398 Sum_probs=197.7
Q ss_pred cceEEEEecC---CCeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCC
Q 025712 14 QNMAAWLLGI---KTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVK 90 (249)
Q Consensus 14 ~~~~~~~~~~---~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~ 90 (249)
+.+++.+..+ ..+++.+++.|+|+++||+|+|+|+|||++|++.+.+... . ..+|.++|||++|+|+++|++|+
T Consensus 9 k~~g~~~~~~~G~l~p~~~~~~~~~~g~~dv~vkI~~cGIChsDlH~~~gdwg-~--s~~PlV~GHEiaG~VvkvGs~V~ 85 (360)
T KOG0023|consen 9 KQFGWAARDPSGVLSPEVFSFPVREPGENDVLVKIEYCGVCHSDLHAWKGDWG-L--SKYPLVPGHEIAGVVVKVGSNVT 85 (360)
T ss_pred hhEEEEEECCCCCCCcceeEcCCCCCCCCcEEEEEEEEeccchhHHHhhccCC-c--ccCCccCCceeeEEEEEECCCcc
Confidence 3455555544 3677799999999999999999999999999999987542 2 68999999999999999999999
Q ss_pred CCCCCCeEEEccC-cCCCCCccccCCCCCCCcCccccC------CCCCCCceeEEEEecCCceEECCCCCChhhhccccc
Q 025712 91 SLEVGDRVALEPG-ISCGHCSLCKAGSYNLCPEMRFFG------SPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEP 163 (249)
Q Consensus 91 ~~~~Gd~V~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~ 163 (249)
+|++||+|.+-.. -+|++|.+|.+++..||+++.+.. +....|+|++|+++++.+++++|++++.+.||.+.+
T Consensus 86 ~~kiGD~vGVg~~~~sC~~CE~C~~~~E~yCpk~~~t~~g~~~DGt~~~ggf~~~~~v~~~~a~kIP~~~pl~~aAPlLC 165 (360)
T KOG0023|consen 86 GFKIGDRVGVGWLNGSCLSCEYCKSGNENYCPKMHFTYNGVYHDGTITQGGFQEYAVVDEVFAIKIPENLPLASAAPLLC 165 (360)
T ss_pred cccccCeeeeeEEeccccCccccccCCcccCCceeEeccccccCCCCccCccceeEEEeeeeEEECCCCCChhhccchhh
Confidence 9999999998555 499999999999999999654332 223456799999999999999999999999997665
Q ss_pred -hHHHHHHHHHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCCh-hHHHHHHHcCCCEEecCCCCcccHHHHH
Q 025712 164 -LSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDV-QRLSIARNLGADETAKVSTDIEMWGRYK 241 (249)
Q Consensus 164 -~~~a~~~l~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~-~~~~~~~~~ga~~vi~~~~~~~~~~~~~ 241 (249)
..|.|..+.+.++.||+++.|.|+|++|.+++|+||+||. +|.+++++. .|.+.++.|||+..++... ++++.+++
T Consensus 166 aGITvYspLk~~g~~pG~~vgI~GlGGLGh~aVq~AKAMG~-rV~vis~~~~kkeea~~~LGAd~fv~~~~-d~d~~~~~ 243 (360)
T KOG0023|consen 166 AGITVYSPLKRSGLGPGKWVGIVGLGGLGHMAVQYAKAMGM-RVTVISTSSKKKEEAIKSLGADVFVDSTE-DPDIMKAI 243 (360)
T ss_pred cceEEeehhHHcCCCCCcEEEEecCcccchHHHHHHHHhCc-EEEEEeCCchhHHHHHHhcCcceeEEecC-CHHHHHHH
Confidence 4488999999999999999999988899999999999999 788887776 7777778899999998774 38999999
Q ss_pred HHHHHHh
Q 025712 242 MQWVQAL 248 (249)
Q Consensus 242 ~~~~~~~ 248 (249)
++.++.+
T Consensus 244 ~~~~dg~ 250 (360)
T KOG0023|consen 244 MKTTDGG 250 (360)
T ss_pred HHhhcCc
Confidence 9988753
No 5
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=4.2e-40 Score=272.27 Aligned_cols=231 Identities=26% Similarity=0.384 Sum_probs=207.2
Q ss_pred cceEEEEecCC-CeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCCC
Q 025712 14 QNMAAWLLGIK-TLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSL 92 (249)
Q Consensus 14 ~~~~~~~~~~~-~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~ 92 (249)
++++++.-+++ +|.++|+..++|+.+||+||+.++++|++|...+++.. ....+|.++|||++|+|+++|+.|+.+
T Consensus 7 ~CKAAV~w~a~~PL~IEei~V~pPka~EVRIKI~~t~vCHTD~~~~~g~~---~~~~fP~IlGHEaaGIVESvGegV~~v 83 (375)
T KOG0022|consen 7 TCKAAVAWEAGKPLVIEEIEVAPPKAHEVRIKILATGVCHTDAYVWSGKD---PEGLFPVILGHEAAGIVESVGEGVTTV 83 (375)
T ss_pred EEeEeeeccCCCCeeEEEEEeCCCCCceEEEEEEEEeeccccceeecCCC---ccccCceEecccceeEEEEecCCcccc
Confidence 47899988875 89999999999999999999999999999999998863 336789999999999999999999999
Q ss_pred CCCCeEEEccCcCCCCCccccCCCCCCCcCccccCC--------C-------------CCCCceeEEEEecCCceEECCC
Q 025712 93 EVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGS--------P-------------PTNGSLAHKVVHPAKLCYKLPD 151 (249)
Q Consensus 93 ~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~-------------~~~g~~~~~~~~~~~~~~~ip~ 151 (249)
++||+|+..+...|++|.+|+++..++|.+++...+ . ....+|+||.+++...+.++++
T Consensus 84 k~GD~Viplf~p~CgeCk~C~s~ktNlC~~~~~~~~~~~~~~DgtSRF~~~gk~iyHfmg~StFsEYTVv~~~~v~kId~ 163 (375)
T KOG0022|consen 84 KPGDHVIPLFTPQCGECKFCKSPKTNLCEKFRADNGKGGMPYDGTSRFTCKGKPIYHFMGTSTFSEYTVVDDISVAKIDP 163 (375)
T ss_pred CCCCEEeeccccCCCCcccccCCCCChhhhhcccccccccccCCceeeeeCCCceEEecccccceeEEEeecceeEecCC
Confidence 999999999999999999999999999987654431 0 1124999999999999999999
Q ss_pred CCChhhhccccc-hHHHHHH-HHHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEec
Q 025712 152 NVSLEEGAMCEP-LSVGVHA-CRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAK 229 (249)
Q Consensus 152 ~~~~~~aa~~~~-~~~a~~~-l~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~ 229 (249)
..+++.++++.. ..|+|.+ ++.+++++|+++.|+|.|+||+++++-||+.|++++|++|-+++|.+..++||++++||
T Consensus 164 ~aPl~kvcLLgCGvsTG~GAa~~~Akv~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~fGaTe~iN 243 (375)
T KOG0022|consen 164 SAPLEKVCLLGCGVSTGYGAAWNTAKVEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEFGATEFIN 243 (375)
T ss_pred CCChhheeEeeccccccchhhhhhcccCCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhcCcceecC
Confidence 999999999884 7788866 48899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccHHHHHHHHHHH
Q 025712 230 VSTDIEMWGRYKMQWVQA 247 (249)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~ 247 (249)
..+-.+..++.+++.|+.
T Consensus 244 p~d~~~~i~evi~EmTdg 261 (375)
T KOG0022|consen 244 PKDLKKPIQEVIIEMTDG 261 (375)
T ss_pred hhhccccHHHHHHHHhcC
Confidence 884334588889888863
No 6
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=100.00 E-value=3e-39 Score=282.71 Aligned_cols=216 Identities=33% Similarity=0.613 Sum_probs=191.9
Q ss_pred cceEEEEecCCCeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCCCC
Q 025712 14 QNMAAWLLGIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLE 93 (249)
Q Consensus 14 ~~~~~~~~~~~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~ 93 (249)
.++++++.+++.+++++.+.| ++++||||||.+++||++|+.++.+...+.....+|.++|||++|+|+++ ++++|+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~p-~~~~evlVkv~a~gic~sD~~~~~~g~~~~~~~~~p~v~GhE~~G~V~~v--~v~~~~ 80 (343)
T PRK09880 4 KTQSCVVAGKKDVAVTEQEIE-WNNNGTLVQITRGGICGSDLHYYQEGKVGNFVIKAPMVLGHEVIGKIVHS--DSSGLK 80 (343)
T ss_pred cceEEEEecCCceEEEecCCC-CCCCeEEEEEEEEEECccccHhhccCCcccccccCCcccCcccEEEEEEe--cCccCC
Confidence 367899999999999999997 68999999999999999999887543222223467999999999999999 788999
Q ss_pred CCCeEEEccCcCCCCCccccCCCCCCCcCccccCCC----CCCCceeEEEEecCCceEECCCCCChhhhccccchHHHHH
Q 025712 94 VGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSP----PTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVH 169 (249)
Q Consensus 94 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~a~~ 169 (249)
+||+|++.+...|++|.+|+.+++++|.+....+.. ...|+|+||+.++++.++++|++++++++++..+++++|+
T Consensus 81 vGdrV~~~~~~~cg~c~~c~~g~~~~c~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~~P~~l~~~~aa~~~~~~~a~~ 160 (343)
T PRK09880 81 EGQTVAINPSKPCGHCKYCLSHNENQCTTMRFFGSAMYFPHVDGGFTRYKVVDTAQCIPYPEKADEKVMAFAEPLAVAIH 160 (343)
T ss_pred CCCEEEECCCCCCcCChhhcCCChhhCCCcceeecccccCCCCCceeeeEEechHHeEECCCCCCHHHHHhhcHHHHHHH
Confidence 999999999999999999999999999987665431 2479999999999999999999999988887778889999
Q ss_pred HHHHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCC
Q 025712 170 ACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVST 232 (249)
Q Consensus 170 ~l~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~ 232 (249)
++.+....+|++|+|+|+|++|++++|+++++|+.+|++++++++|+++++++|+++++|+++
T Consensus 161 al~~~~~~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~ 223 (343)
T PRK09880 161 AAHQAGDLQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADKLVNPQN 223 (343)
T ss_pred HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcEEecCCc
Confidence 998777778999999999999999999999999977999999999999999999999998775
No 7
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=100.00 E-value=4.5e-38 Score=274.54 Aligned_cols=226 Identities=33% Similarity=0.543 Sum_probs=198.7
Q ss_pred ceEEEEecCCCeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCCCCC
Q 025712 15 NMAAWLLGIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEV 94 (249)
Q Consensus 15 ~~~~~~~~~~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~ 94 (249)
|+++++.+++.++++++|.|.|+++||+|||.++++|++|+..+.+.+.. +...|.++|||++|+|+++|++++.+++
T Consensus 1 mka~~~~~~~~l~~~~~~~p~~~~~evlV~v~~~gi~~~D~~~~~~~~~~--~~~~p~i~G~e~~G~V~~vG~~v~~~~~ 78 (339)
T cd08239 1 MRGAVFPGDRTVELREFPVPVPGPGEVLLRVKASGLCGSDLHYYYHGHRA--PAYQGVIPGHEPAGVVVAVGPGVTHFRV 78 (339)
T ss_pred CeEEEEecCCceEEEecCCCCCCCCeEEEEEEEEEeccccHHHHcCCCCc--cCCCCceeccCceEEEEEECCCCccCCC
Confidence 67888999999999999999999999999999999999999887664321 1235889999999999999999999999
Q ss_pred CCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhcccc-chHHHHHHHHH
Q 025712 95 GDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHACRR 173 (249)
Q Consensus 95 Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-~~~~a~~~l~~ 173 (249)
||+|++.+...|++|.+|+.+.+++|.......+....|+|++|+.++.+.++++|+++++++|+++. ...+||++++.
T Consensus 79 Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~g~~~~G~~ae~~~v~~~~~~~~P~~~~~~~aa~l~~~~~ta~~~l~~ 158 (339)
T cd08239 79 GDRVMVYHYVGCGACRNCRRGWMQLCTSKRAAYGWNRDGGHAEYMLVPEKTLIPLPDDLSFADGALLLCGIGTAYHALRR 158 (339)
T ss_pred CCEEEECCCCCCCCChhhhCcCcccCcCcccccccCCCCcceeEEEechHHeEECCCCCCHHHhhhhcchHHHHHHHHHh
Confidence 99999999999999999999999999876542223467999999999999999999999999988776 67899999988
Q ss_pred cCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCCCcccHHHHHHHHH
Q 025712 174 ANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGRYKMQWV 245 (249)
Q Consensus 174 ~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~ 245 (249)
..+++|++|||+|+|++|++++|+++.+|++.|++++++++|.++++++|++++++++. ++ .+.+.+++
T Consensus 159 ~~~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~ga~~~i~~~~--~~-~~~~~~~~ 227 (339)
T cd08239 159 VGVSGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKALGADFVINSGQ--DD-VQEIRELT 227 (339)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEcCCc--ch-HHHHHHHh
Confidence 88999999999999999999999999999955999999999999999999999998865 34 55565554
No 8
>PLN02740 Alcohol dehydrogenase-like
Probab=100.00 E-value=1.1e-37 Score=276.49 Aligned_cols=232 Identities=26% Similarity=0.361 Sum_probs=200.8
Q ss_pred ccceEEEEecCC-CeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCC
Q 025712 13 NQNMAAWLLGIK-TLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKS 91 (249)
Q Consensus 13 ~~~~~~~~~~~~-~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~ 91 (249)
.+|+++++.+++ .+.++|+|.|.|+++||+|||+++++|++|+..+.|... ....+|.++|||++|+|+++|++++.
T Consensus 9 ~~mka~~~~~~~~~~~~~e~~~P~~~~~eVlV~v~~~gic~sD~~~~~g~~~--~~~~~p~i~GhE~~G~V~~vG~~v~~ 86 (381)
T PLN02740 9 ITCKAAVAWGPGEPLVMEEIRVDPPQKMEVRIKILYTSICHTDLSAWKGENE--AQRAYPRILGHEAAGIVESVGEGVED 86 (381)
T ss_pred eeeEEEEEecCCCCcEEEEeeCCCCCCCeEEEEEEEEecChhhHHHhCCCCc--ccCCCCccccccceEEEEEeCCCCCc
Confidence 468898898886 589999999999999999999999999999998887542 12357899999999999999999999
Q ss_pred CCCCCeEEEccCcCCCCCccccCCCCCCCcCccccCC-----------------------CCCCCceeEEEEecCCceEE
Q 025712 92 LEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGS-----------------------PPTNGSLAHKVVHPAKLCYK 148 (249)
Q Consensus 92 ~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~g~~~~~~~~~~~~~~~ 148 (249)
|++||+|++.+...|++|.+|+.+.+++|......+. ....|+|+||+.++.+.+++
T Consensus 87 ~~vGdrV~~~~~~~cg~C~~c~~g~~~~C~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~G~~aey~~v~~~~~~~ 166 (381)
T PLN02740 87 LKAGDHVIPIFNGECGDCRYCKRDKTNLCETYRVDPFKSVMVNDGKTRFSTKGDGQPIYHFLNTSTFTEYTVLDSACVVK 166 (381)
T ss_pred CCCCCEEEecCCCCCCCChhhcCCCcccccCccccccccccccCCCcccccccCCCcccccccCccceeEEEEehHHeEE
Confidence 9999999999999999999999999999987542110 01259999999999999999
Q ss_pred CCCCCChhhhcccc-chHHHHHHH-HHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCE
Q 025712 149 LPDNVSLEEGAMCE-PLSVGVHAC-RRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADE 226 (249)
Q Consensus 149 ip~~~~~~~aa~~~-~~~~a~~~l-~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~ 226 (249)
+|+++++++++++. ...++|+++ +..++++|++|||+|+|++|++++|+|+.+|+.+|++++++++|+++++++|+++
T Consensus 167 iP~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~ 246 (381)
T PLN02740 167 IDPNAPLKKMSLLSCGVSTGVGAAWNTANVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEMGITD 246 (381)
T ss_pred CCCCCCHHHhhhhcccchhhHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHcCCcE
Confidence 99999999888766 577888876 5688999999999999999999999999999966999999999999999999999
Q ss_pred EecCCCCcccHHHHHHHHHH
Q 025712 227 TAKVSTDIEMWGRYKMQWVQ 246 (249)
Q Consensus 227 vi~~~~~~~~~~~~~~~~~~ 246 (249)
++|++..++++.+.+++++.
T Consensus 247 ~i~~~~~~~~~~~~v~~~~~ 266 (381)
T PLN02740 247 FINPKDSDKPVHERIREMTG 266 (381)
T ss_pred EEecccccchHHHHHHHHhC
Confidence 99877644468777777653
No 9
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=100.00 E-value=4.7e-38 Score=272.41 Aligned_cols=202 Identities=30% Similarity=0.389 Sum_probs=177.6
Q ss_pred ceEEEEec---CCCeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCC
Q 025712 15 NMAAWLLG---IKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKS 91 (249)
Q Consensus 15 ~~~~~~~~---~~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~ 91 (249)
|+++++.. |..++++|+|.|.|+++||||||+++++|+.|..+++|.. ....+.|+++|.|++|+|+++|++++.
T Consensus 1 mka~~~~~~g~~~~l~~~e~~~P~p~~geVlVrV~a~gvN~~D~~~r~G~~--~~~~~~P~i~G~d~aG~V~avG~~V~~ 78 (326)
T COG0604 1 MKAVVVEEFGGPEVLKVVEVPEPEPGPGEVLVRVKAAGVNPIDVLVRQGLA--PPVRPLPFIPGSEAAGVVVAVGSGVTG 78 (326)
T ss_pred CeEEEEeccCCCceeEEEecCCCCCCCCeEEEEEEEeecChHHHHhccCCC--CCCCCCCCcccceeEEEEEEeCCCCCC
Confidence 46666663 4469999999999999999999999999999999998762 222468999999999999999999999
Q ss_pred CCCCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhcccc-chHHHHHH
Q 025712 92 LEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHA 170 (249)
Q Consensus 92 ~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-~~~~a~~~ 170 (249)
|++||+|+..+. ....|+|+||..++++.++++|+++++++|++++ ...|||++
T Consensus 79 ~~~GdrV~~~~~-------------------------~~~~G~~AEy~~v~a~~~~~~P~~ls~~eAAal~~~~~TA~~~ 133 (326)
T COG0604 79 FKVGDRVAALGG-------------------------VGRDGGYAEYVVVPADWLVPLPDGLSFEEAAALPLAGLTAWLA 133 (326)
T ss_pred cCCCCEEEEccC-------------------------CCCCCcceeEEEecHHHceeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 999999997520 0046999999999999999999999999999887 57799999
Q ss_pred HHH-cCCCCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCCCcccHHHHHHHHHH
Q 025712 171 CRR-ANVGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGRYKMQWVQ 246 (249)
Q Consensus 171 l~~-~~~~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~~ 246 (249)
+.. .++++|++|||+| +|+||.+++|+||++|+ .++++.+++++.++++++|++++++|.+ ++|.+.++++|.
T Consensus 134 l~~~~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~-~~v~~~~s~~k~~~~~~lGAd~vi~y~~--~~~~~~v~~~t~ 208 (326)
T COG0604 134 LFDRAGLKPGETVLVHGAAGGVGSAAIQLAKALGA-TVVAVVSSSEKLELLKELGADHVINYRE--EDFVEQVRELTG 208 (326)
T ss_pred HHHhcCCCCCCEEEEecCCchHHHHHHHHHHHcCC-cEEEEecCHHHHHHHHhcCCCEEEcCCc--ccHHHHHHHHcC
Confidence 854 8899999999997 89999999999999998 6777778888888999999999999887 679999999885
No 10
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=100.00 E-value=2.1e-37 Score=273.47 Aligned_cols=229 Identities=29% Similarity=0.412 Sum_probs=197.2
Q ss_pred ceEEEEecC-CCeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCCCC
Q 025712 15 NMAAWLLGI-KTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLE 93 (249)
Q Consensus 15 ~~~~~~~~~-~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~ 93 (249)
|+++++..+ +.++++++|.|+|+++||+|||+++++|++|+..+.+.+. ...+|.++|||++|+|+++|++++.++
T Consensus 2 ~~a~~~~~~~~~l~~~~~~~P~~~~~eVlI~v~a~gi~~sD~~~~~g~~~---~~~~p~i~GhE~~G~V~~vG~~v~~~~ 78 (368)
T TIGR02818 2 SRAAVAWAAGQPLKIEEVDVEMPQKGEVLVRIVATGVCHTDAFTLSGADP---EGVFPVILGHEGAGIVEAVGEGVTSVK 78 (368)
T ss_pred ceEEEEecCCCCeEEEEecCCCCCCCeEEEEEEEecccHHHHHHhcCCCC---CCCCCeeeccccEEEEEEECCCCccCC
Confidence 567776655 4799999999999999999999999999999998877542 135689999999999999999999999
Q ss_pred CCCeEEEccCcCCCCCccccCCCCCCCcCcccc---CC-----------------CCCCCceeEEEEecCCceEECCCCC
Q 025712 94 VGDRVALEPGISCGHCSLCKAGSYNLCPEMRFF---GS-----------------PPTNGSLAHKVVHPAKLCYKLPDNV 153 (249)
Q Consensus 94 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-----------------~~~~g~~~~~~~~~~~~~~~ip~~~ 153 (249)
+||+|++.+...|++|.+|+.+++++|...... +. ....|+|+||+.++.+.++++|+++
T Consensus 79 ~GdrV~~~~~~~cg~C~~c~~g~~~~C~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~lP~~l 158 (368)
T TIGR02818 79 VGDHVIPLYTAECGECKFCLSGKTNLCVAVRETQGKGLMPDGTSRFSKDGQPIYHYMGCSTFSEYTVVPEISLAKINPAA 158 (368)
T ss_pred CCCEEEEcCCCCCCCChhhhCCCcccccCcccccccccccCCccccccCCCcccccccCccceeeEEechhheEECCCCC
Confidence 999999988889999999999999999864210 00 0024799999999999999999999
Q ss_pred Chhhhcccc-chHHHHHHH-HHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCC
Q 025712 154 SLEEGAMCE-PLSVGVHAC-RRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVS 231 (249)
Q Consensus 154 ~~~~aa~~~-~~~~a~~~l-~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~ 231 (249)
++++++++. .+.++|+++ +..++++|++|||+|+|++|++++|+|+++|+.+|++++.+++|+++++++|+++++|++
T Consensus 159 ~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~~Ga~~~i~~~ 238 (368)
T TIGR02818 159 PLEEVCLLGCGVTTGIGAVLNTAKVEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKLGATDCVNPN 238 (368)
T ss_pred CHHHhhhhcchhHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCCeEEccc
Confidence 999998776 577899887 568899999999999999999999999999996799999999999999999999999877
Q ss_pred CCcccHHHHHHHHHH
Q 025712 232 TDIEMWGRYKMQWVQ 246 (249)
Q Consensus 232 ~~~~~~~~~~~~~~~ 246 (249)
+.++++.+.+++++.
T Consensus 239 ~~~~~~~~~v~~~~~ 253 (368)
T TIGR02818 239 DYDKPIQEVIVEITD 253 (368)
T ss_pred ccchhHHHHHHHHhC
Confidence 544567777777653
No 11
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=100.00 E-value=2.7e-37 Score=273.03 Aligned_cols=226 Identities=34% Similarity=0.486 Sum_probs=195.9
Q ss_pred ceEEEEec---------CCCeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEe
Q 025712 15 NMAAWLLG---------IKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEV 85 (249)
Q Consensus 15 ~~~~~~~~---------~~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~v 85 (249)
||++++.+ ++.++++++|.|.|+++||+|||.+++||++|+..+.+.+ +..+|.++|||++|+|+++
T Consensus 1 mka~~~~~~g~~~~~~~~~~l~~~~~~~P~~~~~evlV~v~~~gi~~~D~~~~~g~~----~~~~p~i~GhE~~G~V~~v 76 (371)
T cd08281 1 MRAAVLRETGAPTPYADSRPLVIEEVELDPPGPGEVLVKIAAAGLCHSDLSVINGDR----PRPLPMALGHEAAGVVVEV 76 (371)
T ss_pred CcceEEEecccccccccCCCceEEEeecCCCCCCeEEEEEEEEeeCccchHhhcCCC----CCCCCccCCccceeEEEEe
Confidence 56777774 3679999999999999999999999999999999887753 2356899999999999999
Q ss_pred cCCCCCCCCCCeEEEccCcCCCCCccccCCCCCCCcCcccc---CC-----------------CCCCCceeEEEEecCCc
Q 025712 86 GSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFF---GS-----------------PPTNGSLAHKVVHPAKL 145 (249)
Q Consensus 86 G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-----------------~~~~g~~~~~~~~~~~~ 145 (249)
|++++++++||+|++.+...|++|.+|+.+++++|...... |. ....|+|+||+.++.++
T Consensus 77 G~~v~~~~~GdrV~~~~~~~cg~c~~c~~g~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~g~G~~aey~~v~~~~ 156 (371)
T cd08281 77 GEGVTDLEVGDHVVLVFVPSCGHCRPCAEGRPALCEPGAAANGAGTLLSGGRRLRLRGGEINHHLGVSAFAEYAVVSRRS 156 (371)
T ss_pred CCCCCcCCCCCEEEEccCCCCCCCccccCCCcccccCccccccccccccCcccccccCcccccccCcccceeeEEecccc
Confidence 99999999999999887889999999999999999875321 10 00137999999999999
Q ss_pred eEECCCCCChhhhcccc-chHHHHHHH-HHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcC
Q 025712 146 CYKLPDNVSLEEGAMCE-PLSVGVHAC-RRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLG 223 (249)
Q Consensus 146 ~~~ip~~~~~~~aa~~~-~~~~a~~~l-~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~g 223 (249)
++++|+++++++|+++. ...+||.++ +..++++|++|||+|+|++|++++|+|+.+|+..|++++.+++|+++++++|
T Consensus 157 ~~~lP~~l~~~~aa~~~~~~~ta~~~~~~~~~i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~G 236 (371)
T cd08281 157 VVKIDKDVPLEIAALFGCAVLTGVGAVVNTAGVRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARELG 236 (371)
T ss_pred eEECCCCCChHHhhhhcchHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHcC
Confidence 99999999999998776 467888886 5688999999999999999999999999999966999999999999999999
Q ss_pred CCEEecCCCCcccHHHHHHHHHH
Q 025712 224 ADETAKVSTDIEMWGRYKMQWVQ 246 (249)
Q Consensus 224 a~~vi~~~~~~~~~~~~~~~~~~ 246 (249)
+++++++++ +++.+.+++++.
T Consensus 237 a~~~i~~~~--~~~~~~i~~~~~ 257 (371)
T cd08281 237 ATATVNAGD--PNAVEQVRELTG 257 (371)
T ss_pred CceEeCCCc--hhHHHHHHHHhC
Confidence 999998765 678888877653
No 12
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=100.00 E-value=6.7e-37 Score=272.14 Aligned_cols=225 Identities=28% Similarity=0.502 Sum_probs=187.3
Q ss_pred ceEEEEecCCCeEEEEecCCCCC-------CCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecC
Q 025712 15 NMAAWLLGIKTLKIQPYHLPTLG-------PQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGS 87 (249)
Q Consensus 15 ~~~~~~~~~~~l~~~~~~~p~~~-------~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~ 87 (249)
|+++++.+++.++++++|.|.|+ ++||||||++++||++|+.++.|.+ ....|.++|||++|+|+++|+
T Consensus 3 mka~v~~~~~~~~~~e~~~P~~~~~~~~~~~~eVlVkv~a~gIcgsD~~~~~g~~----~~~~p~i~GhE~~G~V~~vG~ 78 (393)
T TIGR02819 3 NRGVVYLGPGKVEVQDIDYPKLELPDGRKCEHGVILKVVTTNICGSDQHMVRGRT----TAPTGLVLGHEITGEVIEKGR 78 (393)
T ss_pred ceEEEEecCCceeEEeccCCcccCCCccCCCCeEEEEEEEeeecHHHHHHHCCCC----CCCCCccccceeEEEEEEEcC
Confidence 77888999999999999999874 6899999999999999999887643 235689999999999999999
Q ss_pred CCCCCCCCCeEEEccCcCCCCCccccCCCCCCCcCcc------ccCC---CCCCCceeEEEEecCC--ceEECCCCCCh-
Q 025712 88 EVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMR------FFGS---PPTNGSLAHKVVHPAK--LCYKLPDNVSL- 155 (249)
Q Consensus 88 ~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~---~~~~g~~~~~~~~~~~--~~~~ip~~~~~- 155 (249)
++++|++||||++.+...|++|.+|+.+++++|.... +.+. ....|+|+||+.++.. +++++|++++.
T Consensus 79 ~V~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~g~~~~~~~~G~~aey~~v~~~~~~l~~vP~~~~~~ 158 (393)
T TIGR02819 79 DVEFIKIGDIVSVPFNIACGRCRNCKEGHTGVCLNVNPARAGAAYGYVDMGGWVGGQSEYVMVPYADFNLLKFPDRDQAL 158 (393)
T ss_pred ccccccCCCEEEEecccCCCCChHHHCcCcccCcCCCCCCccceecccccCCCCCceEEEEEechhhCceEECCCccccc
Confidence 9999999999999988999999999999999999642 1221 1246999999999964 79999988653
Q ss_pred ---hhhc-cccchHHHHHHHHHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCC
Q 025712 156 ---EEGA-MCEPLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVS 231 (249)
Q Consensus 156 ---~~aa-~~~~~~~a~~~l~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~ 231 (249)
..++ +..++.++|+++.+.++++|++|||.|+|++|++++|+|+++|+..+++++.+++|+++++++|++. +++.
T Consensus 159 ~~~~~~a~l~~~~~ta~~a~~~~~~~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~~Ga~~-v~~~ 237 (393)
T TIGR02819 159 EKIRDLTMLSDIFPTGYHGAVTAGVGPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARSFGCET-VDLS 237 (393)
T ss_pred ccccceeeeccHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHcCCeE-EecC
Confidence 2333 4446889999988888999999999999999999999999999966776777889999999999974 5443
Q ss_pred CCcccHHHHHHHHH
Q 025712 232 TDIEMWGRYKMQWV 245 (249)
Q Consensus 232 ~~~~~~~~~~~~~~ 245 (249)
. .+++.+.+.+++
T Consensus 238 ~-~~~~~~~v~~~~ 250 (393)
T TIGR02819 238 K-DATLPEQIEQIL 250 (393)
T ss_pred C-cccHHHHHHHHc
Confidence 3 246666676655
No 13
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=100.00 E-value=1.4e-36 Score=268.16 Aligned_cols=229 Identities=26% Similarity=0.372 Sum_probs=197.5
Q ss_pred cceEEEEecC-CCeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCCC
Q 025712 14 QNMAAWLLGI-KTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSL 92 (249)
Q Consensus 14 ~~~~~~~~~~-~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~ 92 (249)
+|+++++..+ +.+++++++.|+|+++||+|||.++++|++|+..+.+.+. ...+|.++|||++|+|+++|+++++|
T Consensus 2 ~~ka~~~~~~~~~~~l~~~~~p~~~~~evlIkv~a~gi~~~D~~~~~g~~~---~~~~p~i~G~e~~G~V~~vG~~v~~~ 78 (369)
T cd08301 2 TCKAAVAWEAGKPLVIEEVEVAPPQAMEVRIKILHTSLCHTDVYFWEAKGQ---TPLFPRILGHEAAGIVESVGEGVTDL 78 (369)
T ss_pred ccEEEEEecCCCCcEEEEeeCCCCCCCeEEEEEEEEeeCchhHHHhcCCCC---CCCCCcccccccceEEEEeCCCCCcc
Confidence 5788888765 5699999999999999999999999999999998877532 24578999999999999999999999
Q ss_pred CCCCeEEEccCcCCCCCccccCCCCCCCcCcccc---CC--------------C----CCCCceeEEEEecCCceEECCC
Q 025712 93 EVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFF---GS--------------P----PTNGSLAHKVVHPAKLCYKLPD 151 (249)
Q Consensus 93 ~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--------------~----~~~g~~~~~~~~~~~~~~~ip~ 151 (249)
++||+|++.+...|++|.+|..+.++.|...... +. . ...|+|+||+.++...++++|+
T Consensus 79 ~~GdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~iP~ 158 (369)
T cd08301 79 KPGDHVLPVFTGECKECRHCKSEKSNMCDLLRINTDRGVMINDGKSRFSINGKPIYHFVGTSTFSEYTVVHVGCVAKINP 158 (369)
T ss_pred ccCCEEEEccCCCCCCCchhcCCCcccCcCcccccccccccCCCccccccCCcceeeeeccccceeEEEEecccEEECCC
Confidence 9999999998999999999999999999875422 10 0 0348999999999999999999
Q ss_pred CCChhhhcccc-chHHHHHHH-HHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEec
Q 025712 152 NVSLEEGAMCE-PLSVGVHAC-RRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAK 229 (249)
Q Consensus 152 ~~~~~~aa~~~-~~~~a~~~l-~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~ 229 (249)
++++++++++. ...++|.++ +..++++|++|||+|+|++|++++|+++.+|+.+|+++++++++.++++++|++.+++
T Consensus 159 ~~~~~~aa~~~~~~~ta~~~~~~~~~~~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~~Ga~~~i~ 238 (369)
T cd08301 159 EAPLDKVCLLSCGVSTGLGAAWNVAKVKKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKKFGVTEFVN 238 (369)
T ss_pred CCCHHHhhhhcchhhHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEEc
Confidence 99999988776 466888776 5588999999999999999999999999999867999999999999999999999998
Q ss_pred CCCCcccHHHHHHHHH
Q 025712 230 VSTDIEMWGRYKMQWV 245 (249)
Q Consensus 230 ~~~~~~~~~~~~~~~~ 245 (249)
++..++++.+.+++++
T Consensus 239 ~~~~~~~~~~~v~~~~ 254 (369)
T cd08301 239 PKDHDKPVQEVIAEMT 254 (369)
T ss_pred ccccchhHHHHHHHHh
Confidence 7754346777776654
No 14
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=100.00 E-value=1.2e-36 Score=267.75 Aligned_cols=227 Identities=26% Similarity=0.398 Sum_probs=196.7
Q ss_pred cceEEEEecCC-CeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCCC
Q 025712 14 QNMAAWLLGIK-TLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSL 92 (249)
Q Consensus 14 ~~~~~~~~~~~-~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~ 92 (249)
+||++++.+++ .+++++.|.|+|+++||+|||.++++|++|+..+.+.. ...+|.++|||++|+|+++|+++++|
T Consensus 1 ~mka~~~~~~~~~~~~~~~~~p~~~~~evlV~v~~~gi~~~D~~~~~g~~----~~~~p~i~G~e~~G~V~~vG~~v~~~ 76 (358)
T TIGR03451 1 TVRGVIARSKGAPVELETIVVPDPGPGEVIVDIQACGVCHTDLHYREGGI----NDEFPFLLGHEAAGVVEAVGEGVTDV 76 (358)
T ss_pred CcEEEEEccCCCCCEEEEEECCCCCCCeEEEEEEEEeecHHHHHHhcCCc----cccCCcccccceEEEEEEeCCCCccc
Confidence 58899999876 59999999999999999999999999999999887643 13568999999999999999999999
Q ss_pred CCCCeEEEccCcCCCCCccccCCCCCCCcCcccc--------CC----CCCCCceeEEEEecCCceEECCCCCChhhhcc
Q 025712 93 EVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFF--------GS----PPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAM 160 (249)
Q Consensus 93 ~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~----~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~ 160 (249)
++||+|++.+...|++|.+|..+++.+|...... |. ....|+|+||+.++.+.++++|+++++++|++
T Consensus 77 ~~GdrV~~~~~~~cg~c~~c~~g~~~~c~~~~~~~~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~ip~~~~~~~aa~ 156 (358)
T TIGR03451 77 APGDYVVLNWRAVCGQCRACKRGRPWYCFDTHNATQKMTLTDGTELSPALGIGAFAEKTLVHAGQCTKVDPAADPAAAGL 156 (358)
T ss_pred CCCCEEEEccCCCCCCChHHhCcCcccCcCccccccccccccCcccccccccccccceEEEehhheEECCCCCChhHhhh
Confidence 9999999998899999999999999999752110 10 01359999999999999999999999998887
Q ss_pred cc-chHHHHHHH-HHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCCCcccHH
Q 025712 161 CE-PLSVGVHAC-RRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWG 238 (249)
Q Consensus 161 ~~-~~~~a~~~l-~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~ 238 (249)
+. ...++|.++ +...+++|++|||+|+|++|++++|+|+.+|+.+|++++++++|+++++++|+++++++++ +++.
T Consensus 157 l~~~~~ta~~~~~~~~~~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~Ga~~~i~~~~--~~~~ 234 (358)
T TIGR03451 157 LGCGVMAGLGAAVNTGGVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGATHTVNSSG--TDPV 234 (358)
T ss_pred hcccchhhHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEEcCCC--cCHH
Confidence 76 466778765 5578899999999999999999999999999966999999999999999999999998765 6788
Q ss_pred HHHHHHHH
Q 025712 239 RYKMQWVQ 246 (249)
Q Consensus 239 ~~~~~~~~ 246 (249)
+.++++++
T Consensus 235 ~~i~~~~~ 242 (358)
T TIGR03451 235 EAIRALTG 242 (358)
T ss_pred HHHHHHhC
Confidence 88877664
No 15
>PLN02827 Alcohol dehydrogenase-like
Probab=100.00 E-value=2e-36 Score=268.14 Aligned_cols=227 Identities=22% Similarity=0.364 Sum_probs=194.4
Q ss_pred cceEEEEecCC-CeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCCC
Q 025712 14 QNMAAWLLGIK-TLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSL 92 (249)
Q Consensus 14 ~~~~~~~~~~~-~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~ 92 (249)
.|+++++.++. .++++++|.|.|+++||+|||.++++|++|+..+.+. ..+|.++|||++|+|+++|+++++|
T Consensus 12 ~mka~~~~~~~~~~~~~e~~~P~~~~~eVlVkv~~~gic~sD~~~~~g~------~~~p~i~GhE~~G~V~~vG~~v~~~ 85 (378)
T PLN02827 12 TCRAAVAWGAGEALVMEEVEVSPPQPLEIRIKVVSTSLCRSDLSAWESQ------ALFPRIFGHEASGIVESIGEGVTEF 85 (378)
T ss_pred eeEEEEEecCCCCceEEEeecCCCCCCEEEEEEEEEecChhHHHHhcCC------CCCCeeecccceEEEEEcCCCCccc
Confidence 47788888765 6999999999999999999999999999999887653 1468899999999999999999999
Q ss_pred CCCCeEEEccCcCCCCCccccCCCCCCCcCccccC--C------------------CCCCCceeEEEEecCCceEECCCC
Q 025712 93 EVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFG--S------------------PPTNGSLAHKVVHPAKLCYKLPDN 152 (249)
Q Consensus 93 ~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~------------------~~~~g~~~~~~~~~~~~~~~ip~~ 152 (249)
++||+|++.+...|++|.+|+.+++++|....... . ....|+|+||+.++.+.++++|++
T Consensus 86 ~~GdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~G~~aeyv~v~~~~~~~iP~~ 165 (378)
T PLN02827 86 EKGDHVLTVFTGECGSCRHCISGKSNMCQVLGLERKGVMHSDQKTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVDPL 165 (378)
T ss_pred CCCCEEEEecCCCCCCChhhhCcCcccccCccccccccccCCCcccccccCcccccccccccceeeEEechhheEECCCC
Confidence 99999999988899999999999999998743210 0 002489999999999999999999
Q ss_pred CChhhhcccc-chHHHHHHH-HHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecC
Q 025712 153 VSLEEGAMCE-PLSVGVHAC-RRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKV 230 (249)
Q Consensus 153 ~~~~~aa~~~-~~~~a~~~l-~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~ 230 (249)
+++++++.+. .+.++|.++ +..++++|++|||+|+|++|++++|+|+++|+..+++++.+++|.++++++|+++++++
T Consensus 166 l~~~~aa~l~~~~~~a~~~~~~~~~~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~lGa~~~i~~ 245 (378)
T PLN02827 166 APLHKICLLSCGVAAGLGAAWNVADVSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKTFGVTDFINP 245 (378)
T ss_pred CCHHHhhhhcchhHhhHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCcEEEcc
Confidence 9998888766 456777665 45789999999999999999999999999999668888889999999999999999987
Q ss_pred CCCcccHHHHHHHHHH
Q 025712 231 STDIEMWGRYKMQWVQ 246 (249)
Q Consensus 231 ~~~~~~~~~~~~~~~~ 246 (249)
++.++++.+.+++++.
T Consensus 246 ~~~~~~~~~~v~~~~~ 261 (378)
T PLN02827 246 NDLSEPIQQVIKRMTG 261 (378)
T ss_pred cccchHHHHHHHHHhC
Confidence 7543577777777653
No 16
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=100.00 E-value=2.1e-36 Score=267.10 Aligned_cols=230 Identities=27% Similarity=0.425 Sum_probs=197.6
Q ss_pred cceEEEEecC-CCeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCCC
Q 025712 14 QNMAAWLLGI-KTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSL 92 (249)
Q Consensus 14 ~~~~~~~~~~-~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~ 92 (249)
.||++++..+ +.++++++|.|.|+++||+|||+++++|++|+..+.+.+. ...+|.++|||++|+|+++|++++++
T Consensus 2 ~~~a~~~~~~~~~~~~~~~~~P~~~~~eVlIrv~a~gi~~~D~~~~~g~~~---~~~~p~v~G~E~~G~V~~vG~~v~~~ 78 (368)
T cd08300 2 TCKAAVAWEAGKPLSIEEVEVAPPKAGEVRIKILATGVCHTDAYTLSGADP---EGLFPVILGHEGAGIVESVGEGVTSV 78 (368)
T ss_pred cceEEEEecCCCCcEEEEeecCCCCCCEEEEEEEEEEechhhHHHhcCCCc---cCCCCceeccceeEEEEEeCCCCccC
Confidence 3677776654 5799999999999999999999999999999998877542 13578999999999999999999999
Q ss_pred CCCCeEEEccCcCCCCCccccCCCCCCCcCcccc---CC-----------------CCCCCceeEEEEecCCceEECCCC
Q 025712 93 EVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFF---GS-----------------PPTNGSLAHKVVHPAKLCYKLPDN 152 (249)
Q Consensus 93 ~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-----------------~~~~g~~~~~~~~~~~~~~~ip~~ 152 (249)
++||+|++.+...|++|.+|+.+++++|.+.... +. ....|+|+||+.++.+.++++|++
T Consensus 79 ~vGdrV~~~~~~~cg~C~~c~~g~~~~c~~~~~~~~~g~~~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~iP~~ 158 (368)
T cd08300 79 KPGDHVIPLYTPECGECKFCKSGKTNLCQKIRATQGKGLMPDGTSRFSCKGKPIYHFMGTSTFSEYTVVAEISVAKINPE 158 (368)
T ss_pred CCCCEEEEcCCCCCCCChhhcCCCcCcCCCccccccccccCCCccccccCCcccccccccccceeEEEEchhceEeCCCC
Confidence 9999999988899999999999999999764311 00 002479999999999999999999
Q ss_pred CChhhhcccc-chHHHHHHH-HHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecC
Q 025712 153 VSLEEGAMCE-PLSVGVHAC-RRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKV 230 (249)
Q Consensus 153 ~~~~~aa~~~-~~~~a~~~l-~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~ 230 (249)
+++++++++. .+.++|+++ +...+++|++|||+|+|++|++++|+|+.+|+..+++++++++|+++++++|+++++|+
T Consensus 159 l~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~lGa~~~i~~ 238 (368)
T cd08300 159 APLDKVCLLGCGVTTGYGAVLNTAKVEPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKKFGATDCVNP 238 (368)
T ss_pred CChhhhhhhccchhhhHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCCEEEcc
Confidence 9999988776 577889876 56889999999999999999999999999999679999999999999999999999998
Q ss_pred CCCcccHHHHHHHHHH
Q 025712 231 STDIEMWGRYKMQWVQ 246 (249)
Q Consensus 231 ~~~~~~~~~~~~~~~~ 246 (249)
++.++++.+.++++++
T Consensus 239 ~~~~~~~~~~v~~~~~ 254 (368)
T cd08300 239 KDHDKPIQQVLVEMTD 254 (368)
T ss_pred cccchHHHHHHHHHhC
Confidence 7643468888877654
No 17
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=100.00 E-value=3e-36 Score=264.01 Aligned_cols=226 Identities=37% Similarity=0.638 Sum_probs=185.1
Q ss_pred ceEEEEecCCC-eEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCc-eeccceEEEEEEecCCCCCC
Q 025712 15 NMAAWLLGIKT-LKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPM-VIGHECAGIIEEVGSEVKSL 92 (249)
Q Consensus 15 ~~~~~~~~~~~-l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~-~~G~e~~G~V~~vG~~v~~~ 92 (249)
||++++..+.. .++++.+.|.+.+++|+|||++++||.+|++.+.+.... ...|. ++|||++|+|+++| .++.+
T Consensus 1 m~a~~~~~~~~~~~~~~~~~p~~~p~~vlVkv~~~gICGSDlh~~~g~~~~---~~~~~~i~GHE~~G~V~evG-~~~~~ 76 (350)
T COG1063 1 MKAAVVYVGGGDVRLEEPPPPIPGPGDVLIRVTATGICGSDLHIYRGGEPF---VPPGDIILGHEFVGEVVEVG-VVRGF 76 (350)
T ss_pred CceeEEEecCCccccccCCCCCCCCCeEEEEEEEEeEchhhhhhccCCCCC---CCCCCcccCccceEEEEEec-cccCC
Confidence 57777776654 447888777789999999999999999999999875421 23344 99999999999999 77889
Q ss_pred CCCCeEEEccCcCCCCCccccCCCCCCCcCccccCCC----CCCCceeEEEEecCCceEEC-CCCCChhhhccccchHHH
Q 025712 93 EVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSP----PTNGSLAHKVVHPAKLCYKL-PDNVSLEEGAMCEPLSVG 167 (249)
Q Consensus 93 ~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~g~~~~~~~~~~~~~~~i-p~~~~~~~aa~~~~~~~a 167 (249)
++||||++.|...|++|.+|+.+.+++|.+....+.. ..+|+|+||+.++.++++.+ |++++.+.|++..+++++
T Consensus 77 ~~GdrVvv~~~~~Cg~C~~C~~G~~~~C~~~~~~g~~~~~~~~~G~~aEyv~vp~~~~~~~~pd~~~~~~aal~epla~~ 156 (350)
T COG1063 77 KVGDRVVVEPNIPCGHCRYCRAGEYNLCENPGFYGYAGLGGGIDGGFAEYVRVPADFNLAKLPDGIDEEAAALTEPLATA 156 (350)
T ss_pred CCCCEEEECCCcCCCCChhHhCcCcccCCCccccccccccCCCCCceEEEEEeccccCeecCCCCCChhhhhhcChhhhh
Confidence 9999999999999999999999999999965444332 26799999999997666655 677788888888899999
Q ss_pred HHHH-HHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHH-cCCCEEecCCCCcccHHHHHHHHH
Q 025712 168 VHAC-RRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN-LGADETAKVSTDIEMWGRYKMQWV 245 (249)
Q Consensus 168 ~~~l-~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~-~ga~~vi~~~~~~~~~~~~~~~~~ 245 (249)
+++. ......++.+++|+|+|++|++++++++.+|+.+||+++.+++|++++++ .|++.+++... ++..+.+.++|
T Consensus 157 ~~~~a~~~~~~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~--~~~~~~~~~~t 234 (350)
T COG1063 157 YHGHAERAAVRPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSE--DDAGAEILELT 234 (350)
T ss_pred hhhhhhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCcc--ccHHHHHHHHh
Confidence 8774 34445555699999999999999999999999999999999999999999 56666665443 26666666665
Q ss_pred H
Q 025712 246 Q 246 (249)
Q Consensus 246 ~ 246 (249)
.
T Consensus 235 ~ 235 (350)
T COG1063 235 G 235 (350)
T ss_pred C
Confidence 4
No 18
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=100.00 E-value=1.7e-35 Score=261.07 Aligned_cols=228 Identities=26% Similarity=0.419 Sum_probs=196.6
Q ss_pred cceEEEEecC-CCeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCCC
Q 025712 14 QNMAAWLLGI-KTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSL 92 (249)
Q Consensus 14 ~~~~~~~~~~-~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~ 92 (249)
.++++++.++ +.++++++|.|.+.++||+|||.++++|++|+..+.+... ..+|.++|||++|+|+++|++++.+
T Consensus 2 ~~ka~~~~~~~~~~~~~~~~~p~~~~~evlVkv~~~gi~~sD~~~~~g~~~----~~~p~i~G~e~~G~V~~vG~~v~~~ 77 (365)
T cd08277 2 KCKAAVAWEAGKPLVIEEIEVAPPKANEVRIKMLATSVCHTDILAIEGFKA----TLFPVILGHEGAGIVESVGEGVTNL 77 (365)
T ss_pred ccEEEEEccCCCCcEEEEEECCCCCCCEEEEEEEEEeechhhHHHhcCCCC----CCCCeecccceeEEEEeeCCCCccC
Confidence 4678877754 4689999999999999999999999999999998876532 4568999999999999999999999
Q ss_pred CCCCeEEEccCcCCCCCccccCCCCCCCcCccccCC-------------------CCCCCceeEEEEecCCceEECCCCC
Q 025712 93 EVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGS-------------------PPTNGSLAHKVVHPAKLCYKLPDNV 153 (249)
Q Consensus 93 ~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~g~~~~~~~~~~~~~~~ip~~~ 153 (249)
++||+|++.+...|++|.+|..+.+.+|.+...... ....|+|+||+.++.+.++++|+++
T Consensus 78 ~~GdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~ae~~~v~~~~~~~lP~~l 157 (365)
T cd08277 78 KPGDKVIPLFIGQCGECSNCRSGKTNLCQKYRANESGLMPDGTSRFTCKGKKIYHFLGTSTFSQYTVVDENYVAKIDPAA 157 (365)
T ss_pred CCCCEEEECCCCCCCCCchhcCcCcccCcCccccccccccCCccccccCCcccccccccccceeeEEEchhheEECCCCC
Confidence 999999998889999999999999999986432210 0125899999999999999999999
Q ss_pred Chhhhcccc-chHHHHHHH-HHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCC
Q 025712 154 SLEEGAMCE-PLSVGVHAC-RRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVS 231 (249)
Q Consensus 154 ~~~~aa~~~-~~~~a~~~l-~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~ 231 (249)
++++++++. .+.++|+++ +...+++|++++|+|+|++|++++|+++++|+.+|++++++++|++.++++|+++++++.
T Consensus 158 ~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~~ga~~~i~~~ 237 (365)
T cd08277 158 PLEHVCLLGCGFSTGYGAAWNTAKVEPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKEFGATDFINPK 237 (365)
T ss_pred CHHHhhHhcchhHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCCcEeccc
Confidence 999998776 577899876 568899999999999999999999999999997799999999999999999999999876
Q ss_pred CCcccHHHHHHHHH
Q 025712 232 TDIEMWGRYKMQWV 245 (249)
Q Consensus 232 ~~~~~~~~~~~~~~ 245 (249)
..+.++.+.+++++
T Consensus 238 ~~~~~~~~~~~~~~ 251 (365)
T cd08277 238 DSDKPVSEVIREMT 251 (365)
T ss_pred cccchHHHHHHHHh
Confidence 54345666666654
No 19
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=100.00 E-value=1.2e-35 Score=260.94 Aligned_cols=214 Identities=26% Similarity=0.387 Sum_probs=177.2
Q ss_pred ceEEEEecCC-CeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCCCC
Q 025712 15 NMAAWLLGIK-TLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLE 93 (249)
Q Consensus 15 ~~~~~~~~~~-~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~ 93 (249)
|+++++..++ .++++++|.|+|+++||||||+|++||++|...+.|.+.......+|.++|||++|+|+++|++ +.|+
T Consensus 1 mka~~~~~~~~~l~~~~~p~p~~~~~evlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~i~G~e~~G~V~~vG~~-~~~~ 79 (355)
T cd08230 1 MKAIAVKPGKPGVRVVDIPEPEPTPGEVLVRTLEVGVCGTDREIVAGEYGTAPPGEDFLVLGHEALGVVEEVGDG-SGLS 79 (355)
T ss_pred CceeEecCCCCCCeEEeCCCCCCCCCeEEEEEEEEEeccccHHHHcCCCCCCCCCCCCeeeccccceEEEEecCC-CCCC
Confidence 4667776433 4999999999999999999999999999999999876422222346899999999999999999 9999
Q ss_pred CCCeEEEccCcCCCCCccccCCCCCCCcCcccc--CCCCCCCceeEEEEecCCceEECCCCCChhhhccccchHHHHHHH
Q 025712 94 VGDRVALEPGISCGHCSLCKAGSYNLCPEMRFF--GSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHAC 171 (249)
Q Consensus 94 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~a~~~l 171 (249)
+||+|+..+...|++|.+|+.+++.+|...... +.....|+|+||+.++.+.++++|++++ +.+++..++.+++.++
T Consensus 80 vGdrV~~~~~~~cg~C~~c~~g~~~~c~~~~~~~~g~~~~~G~~aey~~~~~~~~~~~P~~~~-~~a~~~~p~~~~~~a~ 158 (355)
T cd08230 80 PGDLVVPTVRRPPGKCLNCRIGRPDFCETGEYTERGIKGLHGFMREYFVDDPEYLVKVPPSLA-DVGVLLEPLSVVEKAI 158 (355)
T ss_pred CCCEEEeccccCCCcChhhhCcCcccCCCcceeccCcCCCCccceeEEEeccccEEECCCCCC-cceeecchHHHHHHHH
Confidence 999999988889999999999999999865432 2223579999999999999999999999 5565555666655444
Q ss_pred HH-------cCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeC---ChhHHHHHHHcCCCEEecCCC
Q 025712 172 RR-------ANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDV---DVQRLSIARNLGADETAKVST 232 (249)
Q Consensus 172 ~~-------~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~---~~~~~~~~~~~ga~~vi~~~~ 232 (249)
.. .+.++|++|+|+|+|++|++++|++|.+|+ +++++++ +++|+++++++|+++ +++.+
T Consensus 159 ~~~~~~~~~~~~~~g~~vlI~G~G~vG~~a~q~ak~~G~-~vi~~~~~~~~~~~~~~~~~~Ga~~-v~~~~ 227 (355)
T cd08230 159 EQAEAVQKRLPTWNPRRALVLGAGPIGLLAALLLRLRGF-EVYVLNRRDPPDPKADIVEELGATY-VNSSK 227 (355)
T ss_pred HHHhhhhhhcccCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEecCCCCHHHHHHHHHcCCEE-ecCCc
Confidence 21 235789999999999999999999999999 7888877 689999999999987 45554
No 20
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=3.4e-35 Score=257.30 Aligned_cols=223 Identities=31% Similarity=0.533 Sum_probs=192.5
Q ss_pred ceEEEEecCCCeEEEEecCCCC-CCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCCCC
Q 025712 15 NMAAWLLGIKTLKIQPYHLPTL-GPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLE 93 (249)
Q Consensus 15 ~~~~~~~~~~~l~~~~~~~p~~-~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~ 93 (249)
||++++.+++.+++++.|.|.| .++||+|||.++++|++|...+.... . ..+|.++|||++|+|+++|+++++|+
T Consensus 1 Mka~~~~~~~~~~~~~~~~P~~~~~~evlV~v~~~gi~~~D~~~~~~~~--~--~~~p~i~G~e~~G~V~~vG~~v~~~~ 76 (347)
T PRK10309 1 MKSVVNDTDGIVRVAESPIPEIKHQDDVLVKVASSGLCGSDIPRIFKNG--A--HYYPITLGHEFSGYVEAVGSGVDDLH 76 (347)
T ss_pred CceEEEeCCCceEEEECCCCCCCCCCEEEEEEEEEEEchhcHHHHhCCC--C--CCCCcccccceEEEEEEeCCCCCCCC
Confidence 5788888888999999999987 69999999999999999986543211 0 23588999999999999999999999
Q ss_pred CCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhccccchHHHHHHHHH
Q 025712 94 VGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRR 173 (249)
Q Consensus 94 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~a~~~l~~ 173 (249)
+||+|++.+...|+.|.+|+.+.+.+|......+. ...|+|++|+.++.+.++++|+++++++++++.++.+++++++.
T Consensus 77 vGd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~g~-~~~G~~aey~~v~~~~~~~lP~~~s~~~aa~~~~~~~~~~~~~~ 155 (347)
T PRK10309 77 PGDAVACVPLLPCFTCPECLRGFYSLCAKYDFIGS-RRDGGNAEYIVVKRKNLFALPTDMPIEDGAFIEPITVGLHAFHL 155 (347)
T ss_pred CCCEEEECCCcCCCCCcchhCcCcccCCCcceecc-CCCCccceeEEeehHHeEECcCCCCHHHhhhhhHHHHHHHHHHh
Confidence 99999999999999999999999999987655443 35799999999999999999999999999877666777888777
Q ss_pred cCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCCCcccHHHHHHHHH
Q 025712 174 ANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGRYKMQWV 245 (249)
Q Consensus 174 ~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~ 245 (249)
..++++++++|+|+|++|++++|+|+.+|++.++++++++++.++++++|++++++++. .+ .+.+.+++
T Consensus 156 ~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~Ga~~~i~~~~--~~-~~~~~~~~ 224 (347)
T PRK10309 156 AQGCEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKSLGAMQTFNSRE--MS-APQIQSVL 224 (347)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCceEecCcc--cC-HHHHHHHh
Confidence 88899999999999999999999999999966888999999999999999999998765 23 34455544
No 21
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=100.00 E-value=6.2e-35 Score=255.97 Aligned_cols=230 Identities=39% Similarity=0.638 Sum_probs=200.2
Q ss_pred ceEEEEecCCCeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccc--------cCCCCCceeccceEEEEEEec
Q 025712 15 NMAAWLLGIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCAN--------FIVKKPMVIGHECAGIIEEVG 86 (249)
Q Consensus 15 ~~~~~~~~~~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~--------~~~~~p~~~G~e~~G~V~~vG 86 (249)
|+++++.+++.+++++++.|+|.++||+||+.++++|++|+..+.+..... .....|.++|+|++|+|+++|
T Consensus 1 mka~~~~~~~~l~~~~~~~p~~~~~evlV~v~a~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~vG 80 (351)
T cd08233 1 MKAARYHGRKDIRVEEVPEPPVKPGEVKIKVAWCGICGSDLHEYLDGPIFIPTEGHPHLTGETAPVTLGHEFSGVVVEVG 80 (351)
T ss_pred CceEEEecCCceEEEeccCCCCCCCeEEEEEEEEEECccchHhhcCCCccccccccccccccCCCceecccceEEEEEeC
Confidence 578888888999999999999999999999999999999987665321100 002368899999999999999
Q ss_pred CCCCCCCCCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhccccchHH
Q 025712 87 SEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSV 166 (249)
Q Consensus 87 ~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~ 166 (249)
++++.+++||+|+..+...|+.|.+|+.+++.+|......+.....|+|++|+.++...++++|+++++++++++.++.+
T Consensus 81 ~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~lP~~~~~~~aa~~~~~~t 160 (351)
T cd08233 81 SGVTGFKVGDRVVVEPTIKCGTCGACKRGLYNLCDSLGFIGLGGGGGGFAEYVVVPAYHVHKLPDNVPLEEAALVEPLAV 160 (351)
T ss_pred CCCCCCCCCCEEEECCCCCCCCChHHhCcCcccCCCCceeccCCCCCceeeEEEechHHeEECcCCCCHHHhhhccHHHH
Confidence 99999999999999988899999999999999998776544322479999999999999999999999999887767789
Q ss_pred HHHHHHHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCCCcccHHHHHHHHHH
Q 025712 167 GVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGRYKMQWVQ 246 (249)
Q Consensus 167 a~~~l~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~~ 246 (249)
||.++...++++|++++|+|+|++|++++|+|+.+|++.++++++++++.++++++|++.++++++ .++.+.+++++.
T Consensus 161 a~~~l~~~~~~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~~ga~~~i~~~~--~~~~~~l~~~~~ 238 (351)
T cd08233 161 AWHAVRRSGFKPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEELGATIVLDPTE--VDVVAEVRKLTG 238 (351)
T ss_pred HHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEECCCc--cCHHHHHHHHhC
Confidence 999997788999999999999999999999999999977899989999999999999999998776 678888877653
No 22
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=100.00 E-value=5.4e-35 Score=257.40 Aligned_cols=223 Identities=25% Similarity=0.400 Sum_probs=184.9
Q ss_pred cCccCCcccceEEEEecC-CCeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEE
Q 025712 6 RDDEGDKNQNMAAWLLGI-KTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEE 84 (249)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~-~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~ 84 (249)
.++|..++.++++...+. +.+++.+++.|.|+++||+|||.+++||++|+..+.+.+. ...+|.++|||++|+|++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~eVlV~v~~~gic~sD~~~~~g~~~---~~~~p~i~GhE~~G~V~~ 80 (360)
T PLN02586 4 SPEEEHPQKAFGWAARDPSGVLSPFHFSRRENGDEDVTVKILYCGVCHSDLHTIKNEWG---FTRYPIVPGHEIVGIVTK 80 (360)
T ss_pred ChhhhchhheeEEEecCCCCCceEEeecCCCCCCCeEEEEEEEecCChhhHhhhcCCcC---CCCCCccCCcceeEEEEE
Confidence 345556666777777664 6799999999999999999999999999999998876431 135689999999999999
Q ss_pred ecCCCCCCCCCCeEEEccC-cCCCCCccccCCCCCCCcCccccC------CCCCCCceeEEEEecCCceEECCCCCChhh
Q 025712 85 VGSEVKSLEVGDRVALEPG-ISCGHCSLCKAGSYNLCPEMRFFG------SPPTNGSLAHKVVHPAKLCYKLPDNVSLEE 157 (249)
Q Consensus 85 vG~~v~~~~~Gd~V~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~ 157 (249)
+|+++++|++||+|++.+. ..|++|.+|+.+.+++|....+.. +...+|+|+||+.++.+.++++|+++++++
T Consensus 81 vG~~v~~~~vGdrV~~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~lP~~ls~~~ 160 (360)
T PLN02586 81 LGKNVKKFKEGDRVGVGVIVGSCKSCESCDQDLENYCPKMIFTYNSIGHDGTKNYGGYSDMIVVDQHFVLRFPDNLPLDA 160 (360)
T ss_pred ECCCCCccCCCCEEEEccccCcCCCCccccCCCcccCCCccccccccccCCCcCCCccceEEEEchHHeeeCCCCCCHHH
Confidence 9999999999999986544 589999999999999998754321 123479999999999999999999999999
Q ss_pred hcccc-chHHHHHHHHH-cCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhH-HHHHHHcCCCEEecCCC
Q 025712 158 GAMCE-PLSVGVHACRR-ANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQR-LSIARNLGADETAKVST 232 (249)
Q Consensus 158 aa~~~-~~~~a~~~l~~-~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~-~~~~~~~ga~~vi~~~~ 232 (249)
++.+. ...++|+++.. ...++|++|+|.|+|++|++++|+|+.+|+ ++++++.++++ .+.++++|+++++++.+
T Consensus 161 aa~l~~~~~ta~~al~~~~~~~~g~~VlV~G~G~vG~~avq~Ak~~Ga-~vi~~~~~~~~~~~~~~~~Ga~~vi~~~~ 237 (360)
T PLN02586 161 GAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISSSSNKEDEAINRLGADSFLVSTD 237 (360)
T ss_pred hhhhhcchHHHHHHHHHhcccCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCcchhhhHHHhCCCcEEEcCCC
Confidence 88766 46678888854 456899999999999999999999999999 67777666555 56668899999998654
No 23
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=100.00 E-value=9.6e-35 Score=254.77 Aligned_cols=224 Identities=24% Similarity=0.434 Sum_probs=191.7
Q ss_pred EEEecCCC-eEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCCCCCCC
Q 025712 18 AWLLGIKT-LKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGD 96 (249)
Q Consensus 18 ~~~~~~~~-l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd 96 (249)
.++.+++. +++++.|.|.++++||+|||.++++|++|+..+.+... ....+|.++|||++|+|+++|++++.+ +||
T Consensus 2 ~~~~~~g~~~~~~~~p~P~~~~~evlVrv~~~gic~sD~~~~~~~~~--~~~~~p~i~GhE~~G~V~~vG~~v~~~-~Gd 78 (349)
T TIGR03201 2 WMMTEPGKPMVKTRVEIPELGAGDVVVKVAGCGVCHTDLSYYYMGVR--TNHALPLALGHEISGRVIQAGAGAASW-IGK 78 (349)
T ss_pred ceEecCCCCceEEeccCCCCCCCeEEEEEEEEeecccchHHHcCCCC--ccCCCCeeccccceEEEEEeCCCcCCC-CCC
Confidence 45666664 89999999999999999999999999999987644321 113568999999999999999999887 999
Q ss_pred eEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCC------CCChhhhcccc-chHHHHH
Q 025712 97 RVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPD------NVSLEEGAMCE-PLSVGVH 169 (249)
Q Consensus 97 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~------~~~~~~aa~~~-~~~~a~~ 169 (249)
+|++.+...|++|.+|+.+++++|......|. ...|+|+||+.++.+.++++|+ ++++++++.+. .+.++|+
T Consensus 79 rV~~~~~~~cg~c~~c~~g~~~~c~~~~~~g~-~~~G~~ae~~~v~~~~~~~ip~~~~~~~~~~~~~~a~~~~~~~ta~~ 157 (349)
T TIGR03201 79 AVIVPAVIPCGECELCKTGRGTICRAQKMPGN-DMQGGFASHIVVPAKGLCVVDEARLAAAGLPLEHVSVVADAVTTPYQ 157 (349)
T ss_pred EEEECCCCCCCCChhhhCcCcccCCCCCccCc-CCCCcccceEEechHHeEECCcccccccCCCHHHhhhhcchHHHHHH
Confidence 99999999999999999999999987655442 3469999999999999999998 78888777554 6788999
Q ss_pred HHHHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCCCc-ccHHHHHHHHHH
Q 025712 170 ACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDI-EMWGRYKMQWVQ 246 (249)
Q Consensus 170 ~l~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~-~~~~~~~~~~~~ 246 (249)
++....+++|++|+|+|+|++|++++|+|+.+|+ ++++++++++++++++++|+++++++.+.+ +++.+.++++|+
T Consensus 158 a~~~~~~~~g~~VlV~G~G~vG~~a~~~a~~~G~-~vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~t~ 234 (349)
T TIGR03201 158 AAVQAGLKKGDLVIVIGAGGVGGYMVQTAKAMGA-AVVAIDIDPEKLEMMKGFGADLTLNPKDKSAREVKKLIKAFAK 234 (349)
T ss_pred HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHHhCCceEecCccccHHHHHHHHHhhcc
Confidence 8887889999999999999999999999999999 799999999999999999999999876532 367777776654
No 24
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=100.00 E-value=1e-34 Score=252.80 Aligned_cols=203 Identities=29% Similarity=0.440 Sum_probs=180.8
Q ss_pred CCeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCCCCCCCeEEEccC
Q 025712 24 KTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPG 103 (249)
Q Consensus 24 ~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~ 103 (249)
..++++++|.|.|+++||+|||.++++|++|+..+.|.+.. ...|.++|||++|+|+++|++++++++||+|++.+.
T Consensus 13 ~~l~~~~~p~P~~~~~evlVkv~~~gi~~~D~~~~~g~~~~---~~~p~i~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~ 89 (329)
T TIGR02822 13 GPLRFVERPVPRPGPGELLVRVRACGVCRTDLHVSEGDLPV---HRPRVTPGHEVVGEVAGRGADAGGFAVGDRVGIAWL 89 (329)
T ss_pred CCceEEeCCCCCCCCCeEEEEEEEEeecchhHHHHcCCCCC---CCCCccCCcceEEEEEEECCCCcccCCCCEEEEcCc
Confidence 46899999999999999999999999999999988775421 234789999999999999999999999999987654
Q ss_pred -cCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhcccc-chHHHHHHHHHcCCCCCCe
Q 025712 104 -ISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHACRRANVGPETN 181 (249)
Q Consensus 104 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-~~~~a~~~l~~~~~~~g~~ 181 (249)
..|+.|.+|+.+++++|......|. ...|+|+||+.++.+.++++|+++++.+++.+. ...+||+++...++++|++
T Consensus 90 ~~~c~~c~~c~~g~~~~c~~~~~~g~-~~~G~~aey~~v~~~~~~~lP~~~~~~~aa~l~~~~~ta~~~~~~~~~~~g~~ 168 (329)
T TIGR02822 90 RRTCGVCRYCRRGAENLCPASRYTGW-DTDGGYAEYTTVPAAFAYRLPTGYDDVELAPLLCAGIIGYRALLRASLPPGGR 168 (329)
T ss_pred cCcCCCChHHhCcCcccCCCcccCCc-ccCCcceeEEEeccccEEECCCCCCHHHhHHHhccchHHHHHHHhcCCCCCCE
Confidence 4799999999999999998665543 357999999999999999999999998888554 6778999998888999999
Q ss_pred EEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCC
Q 025712 182 VMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVS 231 (249)
Q Consensus 182 vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~ 231 (249)
|||+|+|++|++++|+|+.+|+ ++++++++++|+++++++|+++++|+.
T Consensus 169 VlV~G~g~iG~~a~~~a~~~G~-~vi~~~~~~~~~~~a~~~Ga~~vi~~~ 217 (329)
T TIGR02822 169 LGLYGFGGSAHLTAQVALAQGA-TVHVMTRGAAARRLALALGAASAGGAY 217 (329)
T ss_pred EEEEcCCHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHhCCceecccc
Confidence 9999999999999999999999 699999999999999999999999854
No 25
>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]
Probab=100.00 E-value=5e-35 Score=235.72 Aligned_cols=200 Identities=27% Similarity=0.326 Sum_probs=181.8
Q ss_pred cccceEEEEe---cCCCeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCC
Q 025712 12 KNQNMAAWLL---GIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSE 88 (249)
Q Consensus 12 ~~~~~~~~~~---~~~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~ 88 (249)
++..+-++++ +++.+++++.|.|+|.++|++||-+|+|+|+.|..+.+|.+. +.+.|++||.|++|+|+++|++
T Consensus 6 p~~~k~i~v~e~Ggydvlk~ed~pv~~papgel~iknka~GlNfid~y~RkGlY~---~~plPytpGmEaaGvVvAvG~g 82 (336)
T KOG1197|consen 6 PPLLKCIVVTEFGGYDVLKLEDRPVPPPAPGELTIKNKACGLNFIDLYFRKGLYD---PAPLPYTPGMEAAGVVVAVGEG 82 (336)
T ss_pred CchheEEEEeccCCcceEEEeeecCCCCCCCceEEeehhcCccHHHHHHhccccC---CCCCCcCCCcccceEEEEecCC
Confidence 3445666666 567899999999999999999999999999999999998763 4688999999999999999999
Q ss_pred CCCCCCCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhcccc-chHHH
Q 025712 89 VKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVG 167 (249)
Q Consensus 89 v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-~~~~a 167 (249)
++++++||+|+.+ +..|.|+|+..+|...++++|+.+++..|+++. -..||
T Consensus 83 vtdrkvGDrVayl----------------------------~~~g~yaee~~vP~~kv~~vpe~i~~k~aaa~llq~lTA 134 (336)
T KOG1197|consen 83 VTDRKVGDRVAYL----------------------------NPFGAYAEEVTVPSVKVFKVPEAITLKEAAALLLQGLTA 134 (336)
T ss_pred ccccccccEEEEe----------------------------ccchhhheeccccceeeccCCcccCHHHHHHHHHHHHHH
Confidence 9999999999976 378999999999999999999999999999766 46788
Q ss_pred HHHHH-HcCCCCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCCCcccHHHHHHHHH
Q 025712 168 VHACR-RANVGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGRYKMQWV 245 (249)
Q Consensus 168 ~~~l~-~~~~~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~ 245 (249)
|..++ ..++++|++||||. +|+||++++|++++.|+ .+|++.++++|++.+++.|++|.|+++. +|+.+++.++|
T Consensus 135 y~ll~e~y~vkpGhtVlvhaAAGGVGlll~Ql~ra~~a-~tI~~asTaeK~~~akenG~~h~I~y~~--eD~v~~V~kiT 211 (336)
T KOG1197|consen 135 YMLLFEAYNVKPGHTVLVHAAAGGVGLLLCQLLRAVGA-HTIATASTAEKHEIAKENGAEHPIDYST--EDYVDEVKKIT 211 (336)
T ss_pred HHHHHHhcCCCCCCEEEEEeccccHHHHHHHHHHhcCc-EEEEEeccHHHHHHHHhcCCcceeeccc--hhHHHHHHhcc
Confidence 87774 48999999999996 89999999999999999 8999999999999999999999999998 99999999887
No 26
>PLN02702 L-idonate 5-dehydrogenase
Probab=100.00 E-value=7.7e-34 Score=250.32 Aligned_cols=233 Identities=74% Similarity=1.271 Sum_probs=200.9
Q ss_pred cccceEEEEecCCCeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCC
Q 025712 12 KNQNMAAWLLGIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKS 91 (249)
Q Consensus 12 ~~~~~~~~~~~~~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~ 91 (249)
.++++++|+.+++.+++++.+.|.+.++||+||+.++++|++|+.+..+...+......|.++|+|++|+|+++|++++.
T Consensus 15 ~~~~~~~~~~~~~~l~~~~~~~p~~~~~ev~Ikv~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~ 94 (364)
T PLN02702 15 EEENMAAWLVGVNTLKIQPFKLPPLGPHDVRVRMKAVGICGSDVHYLKTMRCADFVVKEPMVIGHECAGIIEEVGSEVKH 94 (364)
T ss_pred ccccceEEEecCCceEEEeccCCCCCCCeEEEEEEEEEEchhhhHHHcCCCCccccCCCCcccccceeEEEEEECCCCCC
Confidence 36799999999999999999999999999999999999999999887763322222346789999999999999999999
Q ss_pred CCCCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhccccchHHHHHHH
Q 025712 92 LEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHAC 171 (249)
Q Consensus 92 ~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~a~~~l 171 (249)
|++||+|++.+...|++|.+|+.+...+|......+.....|+|++|+.++.+.++++|+++++.++++..++.++++++
T Consensus 95 ~~~Gd~V~~~~~~~~~~c~~c~~g~~~~c~~~~~~~~~~~~g~~~~y~~v~~~~~~~~P~~l~~~~aa~~~~~~~a~~~~ 174 (364)
T PLN02702 95 LVVGDRVALEPGISCWRCNLCKEGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPENVSLEEGAMCEPLSVGVHAC 174 (364)
T ss_pred CCCCCEEEEcCCCCCCCCcchhCcCcccCCCccccCCCCCCCcccceEEcchHHeEECCCCCCHHHHhhhhHHHHHHHHH
Confidence 99999999999999999999999999999875444433457999999999999999999999999988655666788877
Q ss_pred HHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCCCcccHHHHHHHH
Q 025712 172 RRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGRYKMQW 244 (249)
Q Consensus 172 ~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~ 244 (249)
...++.++++++|+|+|++|++++++++.+|+..++++++++++.++++++|++++++++...+++.+.+.++
T Consensus 175 ~~~~~~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 247 (364)
T PLN02702 175 RRANIGPETNVLVMGAGPIGLVTMLAARAFGAPRIVIVDVDDERLSVAKQLGADEIVLVSTNIEDVESEVEEI 247 (364)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEecCcccccHHHHHHHH
Confidence 7788999999999999999999999999999977888888999999999999999988764445677776554
No 27
>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically
Probab=100.00 E-value=9.2e-34 Score=250.71 Aligned_cols=228 Identities=27% Similarity=0.404 Sum_probs=196.3
Q ss_pred cceEEEEecC-CCeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCCC
Q 025712 14 QNMAAWLLGI-KTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSL 92 (249)
Q Consensus 14 ~~~~~~~~~~-~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~ 92 (249)
+++++|+..+ +.+++++.|.|.+.++||+|||.++++|++|+..+.+.+ ...+|+++|||++|+|+++|++++.+
T Consensus 7 ~~~a~~~~~~~~~~~l~~~p~p~~~~~~vlvkv~~~gi~~~D~~~~~g~~----~~~~p~v~G~e~~G~V~~vG~~v~~~ 82 (373)
T cd08299 7 KCKAAVLWEPKKPFSIEEIEVAPPKAHEVRIKIVATGICRSDDHVVSGKL----VTPFPVILGHEAAGIVESVGEGVTTV 82 (373)
T ss_pred eeEEEEEecCCCCcEEEEeecCCCCCCEEEEEEEEEEcCcccHHHhcCCC----CCCCCccccccceEEEEEeCCCCccC
Confidence 3778887754 579999999999999999999999999999999887754 23568899999999999999999999
Q ss_pred CCCCeEEEccCcCCCCCccccCCCCCCCcCccccCC--------------------CCCCCceeEEEEecCCceEECCCC
Q 025712 93 EVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGS--------------------PPTNGSLAHKVVHPAKLCYKLPDN 152 (249)
Q Consensus 93 ~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~g~~~~~~~~~~~~~~~ip~~ 152 (249)
++||+|++.+..+||+|.+|+.++++.|......+. ....|+|++|+.++.+.++++|++
T Consensus 83 ~~Gd~V~~~~~~~c~~c~~c~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~e~~~v~~~~~~~lP~~ 162 (373)
T cd08299 83 KPGDKVIPLFVPQCGKCRACLNPESNLCLKNDLGKPQGLMQDGTSRFTCKGKPIHHFLGTSTFSEYTVVDEIAVAKIDAA 162 (373)
T ss_pred CCCCEEEECCCCCCCCChhhhCCCcccCcCcccccccccccCCccccccCCcccccccCCCcccceEEecccceeeCCCC
Confidence 999999999889999999999999999986543210 003589999999999999999999
Q ss_pred CChhhhcccc-chHHHHHHH-HHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecC
Q 025712 153 VSLEEGAMCE-PLSVGVHAC-RRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKV 230 (249)
Q Consensus 153 ~~~~~aa~~~-~~~~a~~~l-~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~ 230 (249)
+++.+++++. .+.++|+++ ...++++|++++|+|+|++|++++++++..|+..|+++++++++++.++++|++++++.
T Consensus 163 l~~~~aa~~~~~~~ta~~~~~~~~~~~~g~~VlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~a~~lGa~~~i~~ 242 (373)
T cd08299 163 APLEKVCLIGCGFSTGYGAAVNTAKVTPGSTCAVFGLGGVGLSAIMGCKAAGASRIIAVDINKDKFAKAKELGATECINP 242 (373)
T ss_pred CChHHhheeccchHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEecc
Confidence 9999998777 677888875 66889999999999999999999999999999679999999999999999999999987
Q ss_pred CCCcccHHHHHHHHH
Q 025712 231 STDIEMWGRYKMQWV 245 (249)
Q Consensus 231 ~~~~~~~~~~~~~~~ 245 (249)
.+..+++.+.+.+++
T Consensus 243 ~~~~~~~~~~v~~~~ 257 (373)
T cd08299 243 QDYKKPIQEVLTEMT 257 (373)
T ss_pred cccchhHHHHHHHHh
Confidence 653344666666554
No 28
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=100.00 E-value=6.3e-34 Score=251.79 Aligned_cols=216 Identities=25% Similarity=0.392 Sum_probs=179.0
Q ss_pred ccceEEEEe--c-CCCeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCC
Q 025712 13 NQNMAAWLL--G-IKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEV 89 (249)
Q Consensus 13 ~~~~~~~~~--~-~~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v 89 (249)
.+++++.+. + ++.+.+.+++.|.|+++||+|||.++++|++|+.++.|.+. ....|.++|||++|+|+++|+++
T Consensus 3 ~~~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~gic~sD~~~~~G~~~---~~~~p~i~GhE~aG~Vv~vG~~v 79 (375)
T PLN02178 3 DQNKAFGWAANDESGVLSPFHFSRRENGENDVTVKILFCGVCHSDLHTIKNHWG---FSRYPIIPGHEIVGIATKVGKNV 79 (375)
T ss_pred ccceeEEEEEccCCCCceEEeecCCCCCCCeEEEEEEEEcCchHHHHHhcCCCC---CCCCCcccCceeeEEEEEECCCC
Confidence 455554433 3 46789999999999999999999999999999998876531 12468899999999999999999
Q ss_pred CCCCCCCeEEEccCc-CCCCCccccCCCCCCCcCccccC------CCCCCCceeEEEEecCCceEECCCCCChhhhcccc
Q 025712 90 KSLEVGDRVALEPGI-SCGHCSLCKAGSYNLCPEMRFFG------SPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE 162 (249)
Q Consensus 90 ~~~~~Gd~V~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~------~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~ 162 (249)
++|++||+|++.+.. .|++|.+|+.+++++|.+..... +....|+|+||+.++.+.++++|+++++++++.+.
T Consensus 80 ~~~~vGdrV~~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~lP~~ls~~~aa~l~ 159 (375)
T PLN02178 80 TKFKEGDRVGVGVIIGSCQSCESCNQDLENYCPKVVFTYNSRSSDGTRNQGGYSDVIVVDHRFVLSIPDGLPSDSGAPLL 159 (375)
T ss_pred CccCCCCEEEEcCccCCCCCChhHhCcchhcCCCccccccccccCCCcCCCccccEEEEchHHeEECCCCCCHHHcchhh
Confidence 999999999866554 69999999999999999764321 11236999999999999999999999999988666
Q ss_pred -chHHHHHHHHHcC--CCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChh-HHHHHHHcCCCEEecCCC
Q 025712 163 -PLSVGVHACRRAN--VGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQ-RLSIARNLGADETAKVST 232 (249)
Q Consensus 163 -~~~~a~~~l~~~~--~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~-~~~~~~~~ga~~vi~~~~ 232 (249)
...++|+++.... .++|++++|.|+|++|++++|+|+++|+ ++++++.+++ +.++++++|+++++++.+
T Consensus 160 ~~~~ta~~al~~~~~~~~~g~~VlV~G~G~vG~~avq~Ak~~Ga-~Vi~~~~~~~~~~~~a~~lGa~~~i~~~~ 232 (375)
T PLN02178 160 CAGITVYSPMKYYGMTKESGKRLGVNGLGGLGHIAVKIGKAFGL-RVTVISRSSEKEREAIDRLGADSFLVTTD 232 (375)
T ss_pred ccchHHHHHHHHhCCCCCCCCEEEEEcccHHHHHHHHHHHHcCC-eEEEEeCChHHhHHHHHhCCCcEEEcCcC
Confidence 4667888886543 3689999999999999999999999999 6888776654 478889999999998653
No 29
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=100.00 E-value=5.1e-34 Score=249.51 Aligned_cols=206 Identities=25% Similarity=0.309 Sum_probs=171.1
Q ss_pred cceEEEEecCCCeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhccccccc-CCCCCceeccceEEEEEEecCCCCCC
Q 025712 14 QNMAAWLLGIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANF-IVKKPMVIGHECAGIIEEVGSEVKSL 92 (249)
Q Consensus 14 ~~~~~~~~~~~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~-~~~~p~~~G~e~~G~V~~vG~~v~~~ 92 (249)
.++++++++|++++++|.|.|. +++||||||++++||++|+.+++|.+.... ...+|.++|||++|+|+++|.+ .|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~P~-~~~eVlVkv~a~gIc~sD~~~~~G~~~~~~~~~~~P~i~GhE~~G~V~~~g~~--~~ 78 (341)
T cd08237 2 INQVYRLVRPKFFEVTYEEENL-REDWVIVRPTYLSICHADQRYYQGNRSPEALKKKLPMALIHEGIGVVVSDPTG--TY 78 (341)
T ss_pred cccceEEeccceEEEeecCCCC-CCCeEEEEEEEEEEcCccHHHHcCCCCcccccCCCCeeccceeEEEEEeeCCC--cc
Confidence 4688999999999999999995 999999999999999999999887542211 1357999999999999998864 69
Q ss_pred CCCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhccccchHHHHHHHH
Q 025712 93 EVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACR 172 (249)
Q Consensus 93 ~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~a~~~l~ 172 (249)
++||+|.+.+...|+ |.+|. ..++|....+.+. ...|+|+||+.++.++++++|+++++++|+++.+++++++++.
T Consensus 79 ~vGdrV~~~~~~~~~-~~~~~--~~~~c~~~~~~g~-~~~G~~aey~~v~~~~~~~vP~~l~~~~aa~~~~~~~a~~a~~ 154 (341)
T cd08237 79 KVGTKVVMVPNTPVE-KDEII--PENYLPSSRFRSS-GYDGFMQDYVFLPPDRLVKLPDNVDPEVAAFTELVSVGVHAIS 154 (341)
T ss_pred CCCCEEEECCCCCch-hcccc--hhccCCCcceeEe-cCCCceEEEEEEchHHeEECCCCCChHHhhhhchHHHHHHHHH
Confidence 999999998877777 44564 3455765544432 3469999999999999999999999999988888899998884
Q ss_pred H---cCCCCCCeEEEEcCChHHHHHHHHHHH-cCCCeEEEEeCChhHHHHHHHcCCCE
Q 025712 173 R---ANVGPETNVMIMGSGPIGLVTLLAARA-FGAPRIIITDVDVQRLSIARNLGADE 226 (249)
Q Consensus 173 ~---~~~~~g~~vlI~G~g~vG~~ai~la~~-~G~~~vi~~~~~~~~~~~~~~~ga~~ 226 (249)
. ...++|++|+|.|+|++|++++|+++. +|..+|++++.+++|+++++++++++
T Consensus 155 ~~~~~~~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~~~~~ 212 (341)
T cd08237 155 RFEQIAHKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFADETY 212 (341)
T ss_pred HHhhcCCCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhcCcee
Confidence 3 456899999999999999999999986 66657999999999999988766543
No 30
>PRK10083 putative oxidoreductase; Provisional
Probab=100.00 E-value=2.4e-33 Score=244.57 Aligned_cols=221 Identities=31% Similarity=0.569 Sum_probs=194.0
Q ss_pred ceEEEEecCCCeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCCCCC
Q 025712 15 NMAAWLLGIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEV 94 (249)
Q Consensus 15 ~~~~~~~~~~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~ 94 (249)
||++++.+++.+++++++.|.|+++|++||+.++++|++|+..+.+.+.. ..+|.++|||++|+|+++|++++.+++
T Consensus 1 m~a~~~~~~~~~~~~~~~~p~~~~~~vlV~v~~~gi~~~d~~~~~g~~~~---~~~p~i~G~e~~G~V~~vG~~v~~~~~ 77 (339)
T PRK10083 1 MKSIVIEKPNSLAIEERPIPQPAAGEVRVKVKLAGICGSDSHIYRGHNPF---AKYPRVIGHEFFGVIDAVGEGVDAARI 77 (339)
T ss_pred CeEEEEecCCeeEEEeccCCCCCCCeEEEEEEEEEEcccchHHHcCCCCc---CCCCcccccceEEEEEEECCCCccCCC
Confidence 57888889999999999999999999999999999999999888765321 246889999999999999999999999
Q ss_pred CCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhccccchHHHHHHHHHc
Q 025712 95 GDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRA 174 (249)
Q Consensus 95 Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~a~~~l~~~ 174 (249)
||+|++.+...|+.|.+|..+++.+|..+...+. ..+|+|++|+.++...++++|+++++.++++..++.+++.+++..
T Consensus 78 Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~ip~~~~~~~a~~~~~~~~a~~~~~~~ 156 (339)
T PRK10083 78 GERVAVDPVISCGHCYPCSIGKPNVCTSLVVLGV-HRDGGFSEYAVVPAKNAHRIPDAIADQYAVMVEPFTIAANVTGRT 156 (339)
T ss_pred CCEEEEccccCCCCCccccCcCcccCCCCceEEE-ccCCcceeeEEechHHeEECcCCCCHHHHhhhchHHHHHHHHHhc
Confidence 9999999999999999999999999987654332 246999999999999999999999998887666777888766778
Q ss_pred CCCCCCeEEEEcCChHHHHHHHHHHH-cCCCeEEEEeCChhHHHHHHHcCCCEEecCCCCcccHHHHH
Q 025712 175 NVGPETNVMIMGSGPIGLVTLLAARA-FGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGRYK 241 (249)
Q Consensus 175 ~~~~g~~vlI~G~g~vG~~ai~la~~-~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~ 241 (249)
++++|++|+|+|+|++|++++|+++. +|+..+++++++++|.++++++|+++++++++ +++.+.+
T Consensus 157 ~~~~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~~~Ga~~~i~~~~--~~~~~~~ 222 (339)
T PRK10083 157 GPTEQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKESGADWVINNAQ--EPLGEAL 222 (339)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHhCCcEEecCcc--ccHHHHH
Confidence 89999999999999999999999996 69977888999999999999999999998765 4555544
No 31
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=100.00 E-value=6.8e-33 Score=243.91 Aligned_cols=227 Identities=35% Similarity=0.556 Sum_probs=194.0
Q ss_pred eEEEEecCC-CeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCC---
Q 025712 16 MAAWLLGIK-TLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKS--- 91 (249)
Q Consensus 16 ~~~~~~~~~-~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~--- 91 (249)
|++++.+++ .+++++.+.|.|+++||+|||.++++|++|+....|.+.. ..+|.++|+|++|+|+++|++++.
T Consensus 2 ka~~~~~~~~~l~~~~~~~p~~~~~evlV~v~a~~l~~~d~~~~~g~~~~---~~~p~~~G~e~~G~V~~vG~~v~~~~~ 78 (361)
T cd08231 2 RAAVLTGPGKPLEIREVPLPDLEPGAVLVRVRLAGVCGSDVHTVAGRRPR---VPLPIILGHEGVGRVVALGGGVTTDVA 78 (361)
T ss_pred eEEEEcCCCCCCEEEeccCCCCCCCeEEEEEEEEeecCccHHHhcCCCCC---CCCCcccccCCceEEEEeCCCcccccc
Confidence 677888776 8999999999999999999999999999999888765421 357889999999999999999986
Q ss_pred ---CCCCCeEEEccCcCCCCCccccCCCCCCCcCccccCCC------CCCCceeEEEEecCC-ceEECCCCCChhhhccc
Q 025712 92 ---LEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSP------PTNGSLAHKVVHPAK-LCYKLPDNVSLEEGAMC 161 (249)
Q Consensus 92 ---~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~g~~~~~~~~~~~-~~~~ip~~~~~~~aa~~ 161 (249)
+++||+|++.+...|++|.+|+.+.+++|......+.. ...|+|++|+.++.+ .++++|++++..+++++
T Consensus 79 ~~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~~~~~~lP~~~~~~~aa~~ 158 (361)
T cd08231 79 GEPLKVGDRVTWSVGAPCGRCYRCLVGDPTKCENRKKYGHEASCDDPHLSGGYAEHIYLPPGTAIVRVPDNVPDEVAAPA 158 (361)
T ss_pred CCccCCCCEEEEcccCCCCCChhHhCcCccccccchhccccccccCCCCCcccceEEEecCCCceEECCCCCCHHHHHHh
Confidence 99999999998899999999999999999876554421 246999999999986 79999999998888877
Q ss_pred -cchHHHHHHHHHc-CCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCCCc-ccHH
Q 025712 162 -EPLSVGVHACRRA-NVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDI-EMWG 238 (249)
Q Consensus 162 -~~~~~a~~~l~~~-~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~-~~~~ 238 (249)
..+.+||+++... ..++++++||+|+|++|++++++|+.+|++.++++++++++.++++++|++++++++... .++.
T Consensus 159 ~~~~~ta~~al~~~~~~~~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~ 238 (361)
T cd08231 159 NCALATVLAALDRAGPVGAGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELAREFGADATIDIDELPDPQRR 238 (361)
T ss_pred cCHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCCeEEcCcccccHHHH
Confidence 4688999998664 445999999999999999999999999997788898999999999999999999877532 2344
Q ss_pred HHHHHHH
Q 025712 239 RYKMQWV 245 (249)
Q Consensus 239 ~~~~~~~ 245 (249)
+.+.+++
T Consensus 239 ~~i~~~~ 245 (361)
T cd08231 239 AIVRDIT 245 (361)
T ss_pred HHHHHHh
Confidence 5566654
No 32
>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family. This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,
Probab=100.00 E-value=1.3e-32 Score=241.16 Aligned_cols=229 Identities=30% Similarity=0.547 Sum_probs=197.8
Q ss_pred ceEEEEecCCCeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhccccc--c----cCCCCCceeccceEEEEEEecCC
Q 025712 15 NMAAWLLGIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCA--N----FIVKKPMVIGHECAGIIEEVGSE 88 (249)
Q Consensus 15 ~~~~~~~~~~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~--~----~~~~~p~~~G~e~~G~V~~vG~~ 88 (249)
||++++++|+.+++++.+.|++.+++|+||+.++++|+.|+....+.... . .....|.++|+|++|+|+++|++
T Consensus 1 mka~~~~~~~~~~~~~~~~p~~~~~~v~V~v~a~~i~~~d~~~~~g~~~~~~~~~~~~~~~~p~~~g~e~~G~v~~vG~~ 80 (350)
T cd08256 1 MRAVVCHGPQDYRLEEVPVPRPGPGEILVKVEACGICAGDIKCYHGAPSFWGDENQPPYVKPPMIPGHEFVGRVVELGEG 80 (350)
T ss_pred CeeEEEecCCceEEEECCCCCCCCCeEEEEEEEEEEcccchhhhcCCCccccccccCccCCCCcccCcceeEEEEEeCCC
Confidence 57888998999999999999999999999999999999999887764210 0 00246778999999999999999
Q ss_pred CC--CCCCCCeEEEccCcCCCCCccccCCCCCCCcCccccCC-CCCCCceeEEEEecCC-ceEECCCCCChhhhccccch
Q 025712 89 VK--SLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGS-PPTNGSLAHKVVHPAK-LCYKLPDNVSLEEGAMCEPL 164 (249)
Q Consensus 89 v~--~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~-~~~~ip~~~~~~~aa~~~~~ 164 (249)
++ .+++||+|++.+...|++|.+|+.++...|....+.+. ....|+|++|+.++.+ .++++|+++++++++.+.++
T Consensus 81 v~~~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~lP~~~~~~~aa~~~~~ 160 (350)
T cd08256 81 AEERGVKVGDRVISEQIVPCWNCRFCNRGQYWMCQKHDLYGFQNNVNGGMAEYMRFPKEAIVHKVPDDIPPEDAILIEPL 160 (350)
T ss_pred cccCCCCCCCEEEECCcCCCCCChHHhCcCcccCcCccceeeccCCCCcceeeEEcccccceEECCCCCCHHHHhhhhHH
Confidence 99 89999999999999999999999999999986554332 1256999999999987 57899999999988876778
Q ss_pred HHHHHHHHHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCCCcccHHHHHHHH
Q 025712 165 SVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGRYKMQW 244 (249)
Q Consensus 165 ~~a~~~l~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~ 244 (249)
.++|.+++..++.++++++|.|+|++|++++++|+++|+..++++++++++.++++++|++++++++. .++.+.+.++
T Consensus 161 ~ta~~a~~~~~~~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~--~~~~~~~~~~ 238 (350)
T cd08256 161 ACALHAVDRANIKFDDVVVLAGAGPLGLGMIGAARLKNPKKLIVLDLKDERLALARKFGADVVLNPPE--VDVVEKIKEL 238 (350)
T ss_pred HHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCHHHHHHHHHcCCcEEecCCC--cCHHHHHHHH
Confidence 89998887788999999999889999999999999999877888999999999999999999988764 6777777766
Q ss_pred H
Q 025712 245 V 245 (249)
Q Consensus 245 ~ 245 (249)
+
T Consensus 239 ~ 239 (350)
T cd08256 239 T 239 (350)
T ss_pred h
Confidence 5
No 33
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=100.00 E-value=1.7e-32 Score=240.53 Aligned_cols=226 Identities=29% Similarity=0.366 Sum_probs=196.1
Q ss_pred ceEEEEecCCCeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCCCCC
Q 025712 15 NMAAWLLGIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEV 94 (249)
Q Consensus 15 ~~~~~~~~~~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~ 94 (249)
|+++++.+++.+++++.+.|.+.++||+|||+++++|++|+..+.+.+.. ...|.++|+|++|+|+++|++++++++
T Consensus 1 mka~~~~~~~~~~l~~~~~p~~~~~evlIkv~a~~i~~~d~~~~~g~~~~---~~~~~~~G~e~~G~V~~vG~~v~~~~~ 77 (351)
T cd08285 1 MKAFAMLGIGKVGWIEKPIPVCGPNDAIVRPTAVAPCTSDVHTVWGGAPG---ERHGMILGHEAVGVVEEVGSEVKDFKP 77 (351)
T ss_pred CceEEEccCCccEEEECCCCCCCCCeEEEEEEEEEechhhHHHhcCCCCC---CCCCcccCcceEEEEEEecCCcCccCC
Confidence 67888999888999999999999999999999999999999877765321 356889999999999999999999999
Q ss_pred CCeEEEccCcCCCCCccccCCCCCCCcCcc--ccCCCCCCCceeEEEEecCC--ceEECCCCCChhhhcccc-chHHHHH
Q 025712 95 GDRVALEPGISCGHCSLCKAGSYNLCPEMR--FFGSPPTNGSLAHKVVHPAK--LCYKLPDNVSLEEGAMCE-PLSVGVH 169 (249)
Q Consensus 95 Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~--~~~~ip~~~~~~~aa~~~-~~~~a~~ 169 (249)
||+|++.+...|++|..|..+....|.+.. +..+....|+|++|+.++.. .++++|+++++.+++.+. .+.++++
T Consensus 78 Gd~V~~~~~~~~~~c~~c~~g~~~~~~~~~~~~~~~~~~~g~~~~y~~v~~~~~~~~~lP~~~~~~~aa~~~~~~~ta~~ 157 (351)
T cd08285 78 GDRVIVPAITPDWRSVAAQRGYPSQSGGMLGGWKFSNFKDGVFAEYFHVNDADANLAPLPDGLTDEQAVMLPDMMSTGFH 157 (351)
T ss_pred CCEEEEcCcCCCCCCHHHHCcCcccCcCCCCCccccCCCCcceeEEEEcchhhCceEECCCCCCHHHhhhhccchhhHHH
Confidence 999999888899999999999999997631 11112346999999999974 899999999999988765 6788898
Q ss_pred HHHHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCCCcccHHHHHHHHH
Q 025712 170 ACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGRYKMQWV 245 (249)
Q Consensus 170 ~l~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~ 245 (249)
+++...+++++++||+|+|++|++++|+|+.+|+..++++++++++.++++++|++++++++. .++.+.+.+++
T Consensus 158 ~~~~~~~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~--~~~~~~i~~~~ 231 (351)
T cd08285 158 GAELANIKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKEYGATDIVDYKN--GDVVEQILKLT 231 (351)
T ss_pred HHHccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCceEecCCC--CCHHHHHHHHh
Confidence 887788999999999999999999999999999977999999999999999999999998775 56777776654
No 34
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=100.00 E-value=2.7e-32 Score=238.57 Aligned_cols=227 Identities=54% Similarity=0.964 Sum_probs=194.9
Q ss_pred EEEEecCCCeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCCCCCCC
Q 025712 17 AAWLLGIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGD 96 (249)
Q Consensus 17 ~~~~~~~~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd 96 (249)
+.++.++..+++++.+.|.+.++||+|||.++++|+.|+..+.+...+......|.++|+|++|+|+++|++++++++||
T Consensus 1 ~~~~~~~~~~~~~~~~~~~l~~~~vlV~v~~~~l~~~d~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd 80 (343)
T cd05285 1 AAVLHGPGDLRLEERPIPEPGPGEVLVRVRAVGICGSDVHYYKHGRIGDFVVKEPMVLGHESAGTVVAVGSGVTHLKVGD 80 (343)
T ss_pred CceEecCCceeEEECCCCCCCCCeEEEEEEEeeEccccHHHHccCCCcccCCCCCcccCcceeEEEEeeCCCCCCCCCCC
Confidence 35788889999999999999999999999999999999876643222222234577899999999999999999999999
Q ss_pred eEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhccccchHHHHHHHHHcCC
Q 025712 97 RVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANV 176 (249)
Q Consensus 97 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~a~~~l~~~~~ 176 (249)
+|++.+...|++|.+|..+++.+|.+....+.....|+|++|+.++.+.++++|+++++.+++.+.++.+|++++..+++
T Consensus 81 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~lP~~~~~~~aa~~~~~~~a~~~~~~~~~ 160 (343)
T cd05285 81 RVAIEPGVPCRTCEFCKSGRYNLCPDMRFAATPPVDGTLCRYVNHPADFCHKLPDNVSLEEGALVEPLSVGVHACRRAGV 160 (343)
T ss_pred EEEEccccCCCCChhHhCcCcccCcCccccccccCCCceeeeEEecHHHcEECcCCCCHHHhhhhhHHHHHHHHHHhcCC
Confidence 99998889999999999999999987644333335799999999999999999999999998876677888888878899
Q ss_pred CCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCCCccc---HHHHHHHHH
Q 025712 177 GPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEM---WGRYKMQWV 245 (249)
Q Consensus 177 ~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~---~~~~~~~~~ 245 (249)
++|++++|+|+|++|++++|+|+.+|+..++++++++++.++++++|+++++++++ ++ |.+++.+++
T Consensus 161 ~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~--~~~~~~~~~~~~~~ 230 (343)
T cd05285 161 RPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKELGATHTVNVRT--EDTPESAEKIAELL 230 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCCcEEecccc--ccchhHHHHHHHHh
Confidence 99999999988999999999999999955888988999999999999999998775 34 466666654
No 35
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=100.00 E-value=1.3e-31 Score=236.34 Aligned_cols=226 Identities=27% Similarity=0.428 Sum_probs=193.8
Q ss_pred eEEEEec-CCCeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCCCCC
Q 025712 16 MAAWLLG-IKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEV 94 (249)
Q Consensus 16 ~~~~~~~-~~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~ 94 (249)
+++++.. .+.+++++.+.|.++++||+||+.++++|+.|+..+.+.+ ....|.++|+|++|+|+++|++++.+++
T Consensus 2 ~a~~~~~~~~~~~~~~~~~p~~~~~~vlv~v~~~~i~~~d~~~~~g~~----~~~~~~i~g~e~~G~V~~vG~~v~~~~~ 77 (365)
T cd05279 2 KAAVLWEKGKPLSIEEIEVAPPKAGEVRIKVVATGVCHTDLHVIDGKL----PTPLPVILGHEGAGIVESIGPGVTTLKP 77 (365)
T ss_pred ceeEEecCCCCcEEEEeecCCCCCCeEEEEEEEeeecchhHHHhcCCC----CCCCCcccccceeEEEEEeCCCcccCCC
Confidence 5677775 4589999999999999999999999999999998887643 2356789999999999999999999999
Q ss_pred CCeEEEccCcCCCCCccccCCCCCCCcCccccCCCC--------------------CCCceeEEEEecCCceEECCCCCC
Q 025712 95 GDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPP--------------------TNGSLAHKVVHPAKLCYKLPDNVS 154 (249)
Q Consensus 95 Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~g~~~~~~~~~~~~~~~ip~~~~ 154 (249)
||+|++.+...|++|.+|+.+++++|......+... ..|+|++|+.++.+.++++|++++
T Consensus 78 Gd~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~~~~~lP~~~~ 157 (365)
T cd05279 78 GDKVIPLFGPQCGKCKQCLNPRPNLCSKSRGTNGRGLMSDGTSRFTCKGKPIHHFLGTSTFAEYTVVSEISLAKIDPDAP 157 (365)
T ss_pred CCEEEEcCCCCCCCChhhcCCCcccCCCcccccccccccCCcceeeccCCccccccccccccceEEecCCceEECCCCCC
Confidence 999999988899999999999999997654332100 247999999999999999999999
Q ss_pred hhhhcccc-chHHHHHHH-HHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCC
Q 025712 155 LEEGAMCE-PLSVGVHAC-RRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVST 232 (249)
Q Consensus 155 ~~~aa~~~-~~~~a~~~l-~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~ 232 (249)
+++++.+. .+.++|+++ +..++++|+++||+|+|++|++++++|+.+|+..++++++++++.++++++|++++++.++
T Consensus 158 ~~~a~~~~~~~~ta~~al~~~~~~~~g~~vlI~g~g~vG~~a~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~ 237 (365)
T cd05279 158 LEKVCLIGCGFSTGYGAAVNTAKVTPGSTCAVFGLGGVGLSVIMGCKAAGASRIIAVDINKDKFEKAKQLGATECINPRD 237 (365)
T ss_pred HHHhhHhccchhHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHhCCCeeccccc
Confidence 99988776 677888876 5678999999999999999999999999999966888888999999999999999998776
Q ss_pred CcccHHHHHHHHH
Q 025712 233 DIEMWGRYKMQWV 245 (249)
Q Consensus 233 ~~~~~~~~~~~~~ 245 (249)
.+.++.+.+++++
T Consensus 238 ~~~~~~~~l~~~~ 250 (365)
T cd05279 238 QDKPIVEVLTEMT 250 (365)
T ss_pred ccchHHHHHHHHh
Confidence 3336777776654
No 36
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=100.00 E-value=1.2e-31 Score=233.50 Aligned_cols=223 Identities=26% Similarity=0.421 Sum_probs=192.5
Q ss_pred ceEEEEecC-CCeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCCCC
Q 025712 15 NMAAWLLGI-KTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLE 93 (249)
Q Consensus 15 ~~~~~~~~~-~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~ 93 (249)
||++++.++ +.++++++|.|.++++||+||+.++++|+.|...+.+.... ...|.++|+|++|+|+++|+++++++
T Consensus 1 m~a~~~~~~~~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~---~~~p~~~g~e~~G~v~~vG~~v~~~~ 77 (333)
T cd08296 1 YKAVQVTEPGGPLELVERDVPLPGPGEVLIKVEACGVCHSDAFVKEGAMPG---LSYPRVPGHEVVGRIDAVGEGVSRWK 77 (333)
T ss_pred CeEEEEccCCCCceEEeccCCCCCCCEEEEEEEEEecchHHHHHHhCCCCC---CCCCcccCcceeEEEEEECCCCccCC
Confidence 578888888 68999999999999999999999999999999888764321 24588999999999999999999999
Q ss_pred CCCeEEEcc-CcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhcccc-chHHHHHHH
Q 025712 94 VGDRVALEP-GISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHAC 171 (249)
Q Consensus 94 ~Gd~V~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-~~~~a~~~l 171 (249)
+||+|++.+ ...|++|.+|..++++.|......+ ....|+|++|+.++...++++|+++++.+++.+. .+.++|+++
T Consensus 78 ~Gd~V~~~~~~~~~~~~~~~~~g~~~~c~~~~~~~-~~~~g~~a~~~~v~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~~ 156 (333)
T cd08296 78 VGDRVGVGWHGGHCGTCDACRRGDFVHCENGKVTG-VTRDGGYAEYMLAPAEALARIPDDLDAAEAAPLLCAGVTTFNAL 156 (333)
T ss_pred CCCEEEeccccCCCCCChhhhCcCcccCCCCCccC-cccCCcceeEEEEchhheEeCCCCCCHHHhhhhhhhhHHHHHHH
Confidence 999998754 3689999999999999998654332 2346999999999999999999999998888655 577888888
Q ss_pred HHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCCCcccHHHHHHHH
Q 025712 172 RRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGRYKMQW 244 (249)
Q Consensus 172 ~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~ 244 (249)
....+.++++++|+|+|++|++++++|+.+|+ .++++++++++.+.++++|+++++++.. +++.+.++++
T Consensus 157 ~~~~~~~~~~vlV~g~g~iG~~~~~~a~~~G~-~vi~~~~~~~~~~~~~~~g~~~~i~~~~--~~~~~~~~~~ 226 (333)
T cd08296 157 RNSGAKPGDLVAVQGIGGLGHLAVQYAAKMGF-RTVAISRGSDKADLARKLGAHHYIDTSK--EDVAEALQEL 226 (333)
T ss_pred HhcCCCCCCEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHcCCcEEecCCC--ccHHHHHHhc
Confidence 77788999999999999999999999999999 7899989999999999999999998765 5566665543
No 37
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=100.00 E-value=1.7e-31 Score=235.64 Aligned_cols=226 Identities=29% Similarity=0.403 Sum_probs=192.9
Q ss_pred ccceEEEEecC-CCeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCC
Q 025712 13 NQNMAAWLLGI-KTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKS 91 (249)
Q Consensus 13 ~~~~~~~~~~~-~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~ 91 (249)
++|+++++.++ +.+++++.+.|.+.++||+|||.++++|++|+....+.+. ...|.++|+|++|+|+++|+++..
T Consensus 1 ~~~~a~~~~~~~~~~~~~~~~~p~~~~~~v~Vkv~a~gi~~~d~~~~~g~~~----~~~p~v~G~e~~G~V~~vG~~v~~ 76 (365)
T cd08278 1 MKTTAAVVREPGGPFVLEDVELDDPRPDEVLVRIVATGICHTDLVVRDGGLP----TPLPAVLGHEGAGVVEAVGSAVTG 76 (365)
T ss_pred CccEEeeeccCCCcceEEEeecCCCCCCeEEEEEEEeecCcccHHHhcCCCC----CCCCcccccceeEEEEEeCCCccc
Confidence 46889998875 5789999999999999999999999999999988876432 356889999999999999999999
Q ss_pred CCCCCeEEEccCcCCCCCccccCCCCCCCcCcccc---CC-------------------CCCCCceeEEEEecCCceEEC
Q 025712 92 LEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFF---GS-------------------PPTNGSLAHKVVHPAKLCYKL 149 (249)
Q Consensus 92 ~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-------------------~~~~g~~~~~~~~~~~~~~~i 149 (249)
+++||+|++.+. .|++|.+|+.+..++|...... +. ....|+|++|+.++.+.++++
T Consensus 77 ~~~Gd~V~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~y~~v~~~~~~~i 155 (365)
T cd08278 77 LKPGDHVVLSFA-SCGECANCLSGHPAYCENFFPLNFSGRRPDGSTPLSLDDGTPVHGHFFGQSSFATYAVVHERNVVKV 155 (365)
T ss_pred CCCCCEEEEccc-CCCCChHHhCCCcccccCcccccccccccCCcccccccCCcccccccccccceeeEEEecchhEEEC
Confidence 999999998764 7999999999999999754321 00 112589999999999999999
Q ss_pred CCCCChhhhcccc-chHHHHHHH-HHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEE
Q 025712 150 PDNVSLEEGAMCE-PLSVGVHAC-RRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADET 227 (249)
Q Consensus 150 p~~~~~~~aa~~~-~~~~a~~~l-~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~v 227 (249)
|+++++++++.+. .+.+|+.++ +...++++++++|+|+|++|++++|+|++.|+..+++++++++|.++++++|++++
T Consensus 156 P~~~s~~~a~~l~~~~~ta~~~~~~~~~~~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~~g~~~~ 235 (365)
T cd08278 156 DKDVPLELLAPLGCGIQTGAGAVLNVLKPRPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKELGATHV 235 (365)
T ss_pred CCCCCHHHhhhhcchhhhhhHHHhhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCcEE
Confidence 9999998887665 466778776 55788999999999999999999999999999779999999999999999999999
Q ss_pred ecCCCCcccHHHHHHHHH
Q 025712 228 AKVSTDIEMWGRYKMQWV 245 (249)
Q Consensus 228 i~~~~~~~~~~~~~~~~~ 245 (249)
++++. +++.+.+.+++
T Consensus 236 i~~~~--~~~~~~v~~~~ 251 (365)
T cd08278 236 INPKE--EDLVAAIREIT 251 (365)
T ss_pred ecCCC--cCHHHHHHHHh
Confidence 98765 56777776654
No 38
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=100.00 E-value=1.8e-31 Score=232.73 Aligned_cols=226 Identities=32% Similarity=0.526 Sum_probs=197.6
Q ss_pred ceEEEEecC-CCeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCCCC
Q 025712 15 NMAAWLLGI-KTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLE 93 (249)
Q Consensus 15 ~~~~~~~~~-~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~ 93 (249)
|+++++..+ ..+++++.+.|.+.+++|+||+.++++|+.|+....+.+....+..+|.++|+|++|+|+++|+++..++
T Consensus 1 ~ka~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~G~e~~G~V~~vG~~v~~~~ 80 (340)
T cd05284 1 MKAARLYEYGKPLRLEDVPVPEPGPGQVLVRVGGAGVCHSDLHVIDGVWGGILPYKLPFTLGHENAGWVEEVGSGVDGLK 80 (340)
T ss_pred CeeeEeccCCCCceEEeCCCCCCCCCeEEEEEEEEeecchhHHHHcCCCcccccCCCCeecccceeEEEEEeCCCCCcCc
Confidence 467777766 5789999999999999999999999999999988877553323456789999999999999999999999
Q ss_pred CCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhcccc-chHHHHHHHH
Q 025712 94 VGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHACR 172 (249)
Q Consensus 94 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-~~~~a~~~l~ 172 (249)
+||+|++.+...|+.|..|..+...+|....+.+. ...|+|++|+.++.+.++++|+++++++++.+. .+.+||+++.
T Consensus 81 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~v~~~~~~~~P~~ls~~~aa~l~~~~~ta~~~l~ 159 (340)
T cd05284 81 EGDPVVVHPPWGCGTCRYCRRGEENYCENARFPGI-GTDGGFAEYLLVPSRRLVKLPRGLDPVEAAPLADAGLTAYHAVK 159 (340)
T ss_pred CCCEEEEcCCCCCCCChHHhCcCcccCCCCcccCc-cCCCcceeeEEecHHHeEECCCCCCHHHhhhhcchHHHHHHHHH
Confidence 99999999888999999999999999998777765 568999999999999999999999999988766 5789999885
Q ss_pred H--cCCCCCCeEEEEcCChHHHHHHHHHHHcC-CCeEEEEeCChhHHHHHHHcCCCEEecCCCCcccHHHHHHHHH
Q 025712 173 R--ANVGPETNVMIMGSGPIGLVTLLAARAFG-APRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGRYKMQWV 245 (249)
Q Consensus 173 ~--~~~~~g~~vlI~G~g~vG~~ai~la~~~G-~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~ 245 (249)
. ..+.+++++||+|+|++|++++++|+..| . .++++++++++.+.++++|++++++++. . +.+++++++
T Consensus 160 ~~~~~~~~~~~vlI~g~~~vg~~~~~~a~~~g~~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~--~-~~~~i~~~~ 231 (340)
T cd05284 160 KALPYLDPGSTVVVIGVGGLGHIAVQILRALTPA-TVIAVDRSEEALKLAERLGADHVLNASD--D-VVEEVRELT 231 (340)
T ss_pred HhcccCCCCCEEEEEcCcHHHHHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHhCCcEEEcCCc--c-HHHHHHHHh
Confidence 4 36888999999998889999999999999 6 7888888999999999999999998765 4 777777654
No 39
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=100.00 E-value=1.9e-31 Score=233.09 Aligned_cols=226 Identities=32% Similarity=0.517 Sum_probs=196.0
Q ss_pred ceEEEEecCCCeEEEEecCCCC-CCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCCCC
Q 025712 15 NMAAWLLGIKTLKIQPYHLPTL-GPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLE 93 (249)
Q Consensus 15 ~~~~~~~~~~~l~~~~~~~p~~-~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~ 93 (249)
|+++++.+++.+.+.+.|.|.| .++||+|||.++++|+.|+..+.+.+.. ...|.++|+|++|+|+++|++++.++
T Consensus 1 ~ka~~~~~~~~~~~~~~~~p~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~---~~~~~~~g~e~~G~V~~vG~~v~~~~ 77 (347)
T cd05278 1 MKALVYLGPGKIGLEEVPDPKIQGPHDAIVRVTATSICGSDLHIYRGGVPG---AKHGMILGHEFVGEVVEVGSDVKRLK 77 (347)
T ss_pred CceEEEecCCceEEEEcCCCCCCCCCeEEEEEEEEEechhhHHHHcCCCCC---CCCCceeccceEEEEEEECCCccccC
Confidence 4678888889999999999999 9999999999999999999888775432 35588999999999999999999999
Q ss_pred CCCeEEEccCcCCCCCccccCCCCCCCcCcccc--CCCCCCCceeEEEEecCC--ceEECCCCCChhhhcccc-chHHHH
Q 025712 94 VGDRVALEPGISCGHCSLCKAGSYNLCPEMRFF--GSPPTNGSLAHKVVHPAK--LCYKLPDNVSLEEGAMCE-PLSVGV 168 (249)
Q Consensus 94 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~~~~--~~~~ip~~~~~~~aa~~~-~~~~a~ 168 (249)
+||+|++.+...||.|.+|..+...+|...... .+....|+|++|+.++.+ .++++|+++++++++.+. .+.+||
T Consensus 78 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~~lP~~~~~~~aa~l~~~~~ta~ 157 (347)
T cd05278 78 PGDRVSVPCITFCGRCRFCRRGYHAHCENGLWGWKLGNRIDGGQAEYVRVPYADMNLAKIPDGLPDEDALMLSDILPTGF 157 (347)
T ss_pred CCCEEEecCCCCCCCChhHhCcCcccCcCCCcccccccCCCCeeeEEEEecchhCeEEECCCCCCHHHHhhhcchhhhee
Confidence 999999999999999999999999999764322 122346999999999987 899999999999988766 588899
Q ss_pred HHHHHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCCCcccHHHHHHHHH
Q 025712 169 HACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGRYKMQWV 245 (249)
Q Consensus 169 ~~l~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~ 245 (249)
+++...++++++++||.|+|++|++++|+|+.+|+..++++++++++.++++++|+++++++++ .++.+.+++++
T Consensus 158 ~~~~~~~~~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~--~~~~~~i~~~~ 232 (347)
T cd05278 158 HGAELAGIKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEAGATDIINPKN--GDIVEQILELT 232 (347)
T ss_pred ehhhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhCCcEEEcCCc--chHHHHHHHHc
Confidence 8887788999999999888999999999999999757888888999999999999999998776 56777776654
No 40
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=100.00 E-value=1.1e-31 Score=236.14 Aligned_cols=215 Identities=27% Similarity=0.385 Sum_probs=179.6
Q ss_pred cceEEEEecCC-CeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCCC
Q 025712 14 QNMAAWLLGIK-TLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSL 92 (249)
Q Consensus 14 ~~~~~~~~~~~-~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~ 92 (249)
.+++++..+|. .+.+++++.|+|+++||+|||.++++|++|+..+.+.+. ...+|.++|||++|+|+++|++++.|
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~p~~~~~eVlVrv~a~gi~~~D~~~~~g~~~---~~~~p~i~G~E~~G~Vv~vG~~v~~~ 85 (357)
T PLN02514 9 KTTGWAARDPSGHLSPYTYTLRKTGPEDVVIKVIYCGICHTDLHQIKNDLG---MSNYPMVPGHEVVGEVVEVGSDVSKF 85 (357)
T ss_pred eEEEEEEecCCCCceEEeecCCCCCCCcEEEEEEEeccChHHHHhhcCCcC---cCCCCccCCceeeEEEEEECCCcccc
Confidence 36777788775 699999999999999999999999999999998876431 12468899999999999999999999
Q ss_pred CCCCeEEEccC-cCCCCCccccCCCCCCCcCccccC------CCCCCCceeEEEEecCCceEECCCCCChhhhcccc-ch
Q 025712 93 EVGDRVALEPG-ISCGHCSLCKAGSYNLCPEMRFFG------SPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PL 164 (249)
Q Consensus 93 ~~Gd~V~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-~~ 164 (249)
++||+|++.+. ..|++|.+|+.+++.+|.+..+.. +....|+|+||+.++...++++|+++++++++.+. .+
T Consensus 86 ~~Gd~V~~~~~~~~c~~C~~c~~g~~~~c~~~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~ 165 (357)
T PLN02514 86 TVGDIVGVGVIVGCCGECSPCKSDLEQYCNKRIWSYNDVYTDGKPTQGGFASAMVVDQKFVVKIPEGMAPEQAAPLLCAG 165 (357)
T ss_pred cCCCEEEEcCccccCCCChhHhCCCcccCCCccccccccccCCccCCCccccEEEEchHHeEECCCCCCHHHhhhhhhhH
Confidence 99999986544 379999999999999998753321 11246999999999999999999999999988666 46
Q ss_pred HHHHHHHHH-cCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHH-HHHcCCCEEecCCC
Q 025712 165 SVGVHACRR-ANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSI-ARNLGADETAKVST 232 (249)
Q Consensus 165 ~~a~~~l~~-~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~-~~~~ga~~vi~~~~ 232 (249)
.+||+++.. ...++|++++|+|+|++|++++|+||++|+ .++++++++++.+. ++++|++++++..+
T Consensus 166 ~ta~~al~~~~~~~~g~~vlV~G~G~vG~~av~~Ak~~G~-~vi~~~~~~~~~~~~~~~~Ga~~~i~~~~ 234 (357)
T PLN02514 166 VTVYSPLSHFGLKQSGLRGGILGLGGVGHMGVKIAKAMGH-HVTVISSSDKKREEALEHLGADDYLVSSD 234 (357)
T ss_pred HHHHHHHHHcccCCCCCeEEEEcccHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHhcCCcEEecCCC
Confidence 788988865 445799999999999999999999999999 67777777766654 46799998887543
No 41
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=100.00 E-value=3.1e-31 Score=235.55 Aligned_cols=226 Identities=33% Similarity=0.501 Sum_probs=194.5
Q ss_pred ceEEEEecCCCeEEEEecCCCC-CCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCCCC
Q 025712 15 NMAAWLLGIKTLKIQPYHLPTL-GPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLE 93 (249)
Q Consensus 15 ~~~~~~~~~~~l~~~~~~~p~~-~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~ 93 (249)
|+++++.+++.+++++.+.|.| .+++|+||+.++++|++|...+.|.+.. ..+|.++|+|++|+|+++|++++.++
T Consensus 1 m~a~~~~~~~~~~~~~~~~p~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~---~~~p~~~G~e~~G~V~~vG~~v~~~~ 77 (386)
T cd08283 1 MKALVWHGKGDVRVEEVPDPKIEDPTDAIVRVTATAICGSDLHLYHGYIPG---MKKGDILGHEFMGVVEEVGPEVRNLK 77 (386)
T ss_pred CeeEEEecCCCceEEeCCCCCCCCCCeEEEEEEEEecchhhhhhhcCCCCC---CCCCccccccceEEEEEeCCCCCCCC
Confidence 5778888899999999999988 4999999999999999999988775422 34688999999999999999999999
Q ss_pred CCCeEEEccCcCCCCCccccCCCCCCCcCccccC------------C-------CCCCCceeEEEEecCC--ceEECCCC
Q 025712 94 VGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFG------------S-------PPTNGSLAHKVVHPAK--LCYKLPDN 152 (249)
Q Consensus 94 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~-------~~~~g~~~~~~~~~~~--~~~~ip~~ 152 (249)
+||+|++.+...||+|.+|+.+.+++|....... . ....|+|++|+.++.+ .++++|++
T Consensus 78 ~Gd~V~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~~lp~~ 157 (386)
T cd08283 78 VGDRVVVPFTIACGECFYCKRGLYSQCDNTNPSAEMAKLYGHAGAGIFGYSHLTGGYAGGQAEYVRVPFADVGPFKIPDD 157 (386)
T ss_pred CCCEEEEcCcCCCCCChhhcCCCcccCCCcccccccccccccccccccccccccCCCCCeeEEEEEcccccCeEEECCCC
Confidence 9999999888899999999999999998643211 0 0136999999999987 89999999
Q ss_pred CChhhhcccc-chHHHHHHHHHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCC
Q 025712 153 VSLEEGAMCE-PLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVS 231 (249)
Q Consensus 153 ~~~~~aa~~~-~~~~a~~~l~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~ 231 (249)
+++++++.+. ...+||++++...+.++++|+|+|+|++|++++++|++.|+..++++++++++.+++++++...++++.
T Consensus 158 ~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~~~vi~~~ 237 (386)
T cd08283 158 LSDEKALFLSDILPTGYHAAELAEVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLGAETINFE 237 (386)
T ss_pred CCHHHHhhhccchhhhHHHHhhccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCcEEEcCC
Confidence 9999988765 678999998778899999999999999999999999999986699999999999999998545677766
Q ss_pred CCcc-cHHHHHHHHH
Q 025712 232 TDIE-MWGRYKMQWV 245 (249)
Q Consensus 232 ~~~~-~~~~~~~~~~ 245 (249)
. . ++.+.+++++
T Consensus 238 ~--~~~~~~~l~~~~ 250 (386)
T cd08283 238 E--VDDVVEALRELT 250 (386)
T ss_pred c--chHHHHHHHHHc
Confidence 5 4 4777777664
No 42
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=100.00 E-value=2.5e-31 Score=232.13 Aligned_cols=227 Identities=35% Similarity=0.573 Sum_probs=190.3
Q ss_pred ceEEEEecCC-CeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCCCC
Q 025712 15 NMAAWLLGIK-TLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLE 93 (249)
Q Consensus 15 ~~~~~~~~~~-~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~ 93 (249)
||++++.++. .+++.+.|.|.|.++||+||++++++|++|+.++.+..........|.++|+|++|+|+++|++++.++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~p~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~~~p~~~g~e~~G~V~~vG~~v~~~~ 80 (341)
T PRK05396 1 MKALVKLKAEPGLWLTDVPVPEPGPNDVLIKVKKTAICGTDVHIYNWDEWAQKTIPVPMVVGHEFVGEVVEVGSEVTGFK 80 (341)
T ss_pred CceEEEecCCCceEEEECCCCCCCCCeEEEEEEEEEEcccchHhhcCCCcccccCCCCcccceeeEEEEEEeCCCCCcCC
Confidence 4667777654 699999999999999999999999999999987665322111235678999999999999999999999
Q ss_pred CCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhccccchHHHHHHHHH
Q 025712 94 VGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRR 173 (249)
Q Consensus 94 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~a~~~l~~ 173 (249)
+||+|++.+...|++|.+|+.+.+++|.+.+..+ ...+|+|++|+.++.+.++++|+++++.+++.+.++.+++.+...
T Consensus 81 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~v~~~~~~~iP~~l~~~~~~~~~~~~~~~~~~~~ 159 (341)
T PRK05396 81 VGDRVSGEGHIVCGHCRNCRAGRRHLCRNTKGVG-VNRPGAFAEYLVIPAFNVWKIPDDIPDDLAAIFDPFGNAVHTALS 159 (341)
T ss_pred CCCEEEECCCCCCCCChhhhCcChhhCCCcceee-ecCCCcceeeEEechHHeEECcCCCCHHHhHhhhHHHHHHHHHHc
Confidence 9999999988899999999999999998743332 335799999999999999999999999888866666666655433
Q ss_pred cCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCCCcccHHHHHHHHH
Q 025712 174 ANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGRYKMQWV 245 (249)
Q Consensus 174 ~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~ 245 (249)
...+|++++|+|+|++|++++|+++..|++.++++++++++.++++++|+++++++++ .++.+.+++++
T Consensus 160 -~~~~g~~vlV~~~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~lg~~~~~~~~~--~~~~~~~~~~~ 228 (341)
T PRK05396 160 -FDLVGEDVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRLELARKMGATRAVNVAK--EDLRDVMAELG 228 (341)
T ss_pred -CCCCCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCCcEEecCcc--ccHHHHHHHhc
Confidence 3468999999989999999999999999966888888999999999999999998775 66777776654
No 43
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=100.00 E-value=3.3e-31 Score=237.12 Aligned_cols=221 Identities=25% Similarity=0.398 Sum_probs=177.5
Q ss_pred ccceEEEEecCCCeEEEEecCCCCCCCcEEEEEeEEecccchHhhHh-ccccccc---CCCCCceeccceEEEEEEecCC
Q 025712 13 NQNMAAWLLGIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFK-TMRCANF---IVKKPMVIGHECAGIIEEVGSE 88 (249)
Q Consensus 13 ~~~~~~~~~~~~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~-~~~~~~~---~~~~p~~~G~e~~G~V~~vG~~ 88 (249)
+.|+++++.+++.++++++|.|.|+++||+|||.++++|++|+..+. +...... ....|.++|||++|+|+++|++
T Consensus 1 m~~~a~~~~~~~~l~~~e~p~P~~~~~eVlVkV~a~gic~sD~~~~~~g~~~~~~~~~~~~~p~i~GhE~~G~V~~vG~~ 80 (410)
T cd08238 1 MKTKAWRMYGKGDLRLEKFELPEIADDEILVRVISDSLCFSTWKLALQGSDHKKVPNDLAKEPVILGHEFAGTILKVGKK 80 (410)
T ss_pred CCcEEEEEEcCCceEEEecCCCCCCCCeEEEEEEEeccCCCCHHHHhcCCccccCcccccCCCceeccccEEEEEEeCCC
Confidence 35788889999999999999999999999999999999999998763 4311110 1246889999999999999999
Q ss_pred CC-CCCCCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCC----ceEECCCCCChhhhccccc
Q 025712 89 VK-SLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAK----LCYKLPDNVSLEEGAMCEP 163 (249)
Q Consensus 89 v~-~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~ip~~~~~~~aa~~~~ 163 (249)
++ .|++||+|++.+...|+.|.+|.. . + ...+|+|+||+.++.+ .++++|+++++++++++.+
T Consensus 81 v~~~~~vGdrV~~~~~~~c~~~~~c~~--------~---g-~~~~G~~aey~~v~~~~~~~~~~~lP~~l~~~~aal~ep 148 (410)
T cd08238 81 WQGKYKPGQRFVIQPALILPDGPSCPG--------Y---S-YTYPGGLATYHIIPNEVMEQDCLLIYEGDGYAEASLVEP 148 (410)
T ss_pred ccCCCCCCCEEEEcCCcCCCCCCCCCC--------c---c-ccCCCcceEEEEecHHhccCCeEECCCCCCHHHHhhcch
Confidence 98 599999999988888888877621 1 1 1257999999999987 6899999999999987655
Q ss_pred hHHH---HHHH---------HHcCCCCCCeEEEEc-CChHHHHHHHHHHHcC--CCeEEEEeCChhHHHHHHHc------
Q 025712 164 LSVG---VHAC---------RRANVGPETNVMIMG-SGPIGLVTLLAARAFG--APRIIITDVDVQRLSIARNL------ 222 (249)
Q Consensus 164 ~~~a---~~~l---------~~~~~~~g~~vlI~G-~g~vG~~ai~la~~~G--~~~vi~~~~~~~~~~~~~~~------ 222 (249)
++++ +.++ ++.++++|++|+|+| +|++|++++|+|+++| +.+|++++.+++|++.++++
T Consensus 149 l~~~~~~~~a~~~~~~~~~~~~~~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~ 228 (410)
T cd08238 149 LSCVIGAYTANYHLQPGEYRHRMGIKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAA 228 (410)
T ss_pred HHHHHHHhhhcccccccchhhhcCCCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhcccccc
Confidence 5443 3222 346789999999997 7999999999999975 45799999999999999997
Q ss_pred --CCC-EEecCCCCcccHHHHHHHHHH
Q 025712 223 --GAD-ETAKVSTDIEMWGRYKMQWVQ 246 (249)
Q Consensus 223 --ga~-~vi~~~~~~~~~~~~~~~~~~ 246 (249)
|++ +++++++ .+++.+.++++++
T Consensus 229 ~~Ga~~~~i~~~~-~~~~~~~v~~~t~ 254 (410)
T cd08238 229 SRGIELLYVNPAT-IDDLHATLMELTG 254 (410)
T ss_pred ccCceEEEECCCc-cccHHHHHHHHhC
Confidence 776 5676543 2467777777664
No 44
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=100.00 E-value=8.8e-31 Score=233.11 Aligned_cols=220 Identities=25% Similarity=0.302 Sum_probs=187.0
Q ss_pred cccceEEEEec-----C-CCeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhccccccc------CC-CCCceeccce
Q 025712 12 KNQNMAAWLLG-----I-KTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANF------IV-KKPMVIGHEC 78 (249)
Q Consensus 12 ~~~~~~~~~~~-----~-~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~------~~-~~p~~~G~e~ 78 (249)
+.+|+++++.. + ..++++++|.|.++++||+|||.++++|++|+....+...... .. ..+.++|||+
T Consensus 10 ~~~~~a~~~~~~~~g~~~~~~~~~~~~~p~l~~~evlI~v~~~gi~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~G~e~ 89 (393)
T cd08246 10 PEKMYAFAIRPERYGDPAQAIQLEDVPVPELGPGEVLVAVMAAGVNYNNVWAALGEPVSTFAARQRRGRDEPYHIGGSDA 89 (393)
T ss_pred chhhhheeeecccCCCcccceEEeecCCCCCCCCEEEEEEEEEeeccchhhhhcCCCccccccccccCCCCCccccccce
Confidence 45577777652 2 2589999999999999999999999999999887765421100 01 1235899999
Q ss_pred EEEEEEecCCCCCCCCCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhh
Q 025712 79 AGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEG 158 (249)
Q Consensus 79 ~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~a 158 (249)
+|+|+++|++++.+++||+|++.+...|++|..|..+.+++|....+.|.....|+|++|+.++...++++|++++++++
T Consensus 90 ~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~~~~~~~~g~~~~~g~~a~y~~v~~~~l~~iP~~l~~~~a 169 (393)
T cd08246 90 SGIVWAVGEGVKNWKVGDEVVVHCSVWDGNDPERAGGDPMFDPSQRIWGYETNYGSFAQFALVQATQLMPKPKHLSWEEA 169 (393)
T ss_pred EEEEEEeCCCCCcCCCCCEEEEeccccccCcccccccccccccccccccccCCCCcceeEEEechHHeEECCCCCCHHHH
Confidence 99999999999999999999999889999999999999999988777776556799999999999999999999999998
Q ss_pred cccc-chHHHHHHHHH---cCCCCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCC
Q 025712 159 AMCE-PLSVGVHACRR---ANVGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVST 232 (249)
Q Consensus 159 a~~~-~~~~a~~~l~~---~~~~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~ 232 (249)
+.+. .+.+||+++.. ++++++++++|+| +|++|++++++++.+|+ .++++++++++.++++++|++++++++.
T Consensus 170 a~l~~~~~tA~~al~~~~~~~~~~g~~vlV~ga~g~iG~a~~~lak~~G~-~vv~~~~s~~~~~~~~~~G~~~~i~~~~ 247 (393)
T cd08246 170 AAYMLVGATAYRMLFGWNPNTVKPGDNVLIWGASGGLGSMAIQLARAAGA-NPVAVVSSEEKAEYCRALGAEGVINRRD 247 (393)
T ss_pred hhhcccHHHHHHHHhhcccccCCCCCEEEEECCCcHHHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHcCCCEEEcccc
Confidence 8554 68899988743 5789999999998 59999999999999999 6777888999999999999999998754
No 45
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=100.00 E-value=6.6e-31 Score=233.35 Aligned_cols=227 Identities=31% Similarity=0.579 Sum_probs=190.4
Q ss_pred EEEecCCCeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhccccc----ccCCCCCceeccceEEEEEEecCCCCCCC
Q 025712 18 AWLLGIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCA----NFIVKKPMVIGHECAGIIEEVGSEVKSLE 93 (249)
Q Consensus 18 ~~~~~~~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~----~~~~~~p~~~G~e~~G~V~~vG~~v~~~~ 93 (249)
.++.+ ..+++++.|.|.++++||+||+.++++|++|+..+.+...+ .....+|.++|+|++|+|+++|+++..++
T Consensus 32 ~~~~~-~~~~~~~~~~p~~~~~ev~V~v~a~gi~~~D~~~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~ 110 (384)
T cd08265 32 KVWRY-PELRVEDVPVPNLKPDEILIRVKACGICGSDIHLYETDKDGYILYPGLTEFPVVIGHEFSGVVEKTGKNVKNFE 110 (384)
T ss_pred EEEeC-CCEEEEECCCCCCCCCEEEEEEEEEEEcHhHHHHHcCCCCcccccCcccCCCcccccceEEEEEEECCCCCCCC
Confidence 33444 47999999999999999999999999999998877632111 01135688999999999999999999999
Q ss_pred CCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCC-------CChhhhccccchHH
Q 025712 94 VGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDN-------VSLEEGAMCEPLSV 166 (249)
Q Consensus 94 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~-------~~~~~aa~~~~~~~ 166 (249)
+||+|++.+...|+.|..|+.+.+.+|..+...+. ...|+|++|+.++.+.++++|++ +++..+++..++.+
T Consensus 111 ~Gd~V~~~~~~~~~~~~~c~~~~~~~~~~~~~~g~-~~~g~~~~~v~v~~~~~~~lP~~~~~~~~~~~~~~a~~~~~~~t 189 (384)
T cd08265 111 KGDPVTAEEMMWCGMCRACRSGSPNHCKNLKELGF-SADGAFAEYIAVNARYAWEINELREIYSEDKAFEAGALVEPTSV 189 (384)
T ss_pred CCCEEEECCCCCCCCChhhhCcCcccCCCcceeee-cCCCcceeeEEechHHeEECCccccccccCCCHHHhhhhhHHHH
Confidence 99999999999999999999999999997665443 24799999999999999999986 45666666667889
Q ss_pred HHHHH-HH-cCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCCC-cccHHHHHHH
Q 025712 167 GVHAC-RR-ANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTD-IEMWGRYKMQ 243 (249)
Q Consensus 167 a~~~l-~~-~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~-~~~~~~~~~~ 243 (249)
+|+++ .. .++++|++|+|+|+|++|++++++|+.+|+..++++++++++.++++++|++++++++.. ..++.+.+++
T Consensus 190 a~~al~~~~~~~~~g~~VlV~g~g~vG~~ai~lA~~~G~~~vi~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~v~~ 269 (384)
T cd08265 190 AYNGLFIRGGGFRPGAYVVVYGAGPIGLAAIALAKAAGASKVIAFEISEERRNLAKEMGADYVFNPTKMRDCLSGEKVME 269 (384)
T ss_pred HHHHHHhhcCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCCEEEcccccccccHHHHHHH
Confidence 99888 33 688999999999999999999999999999779999889999999999999999987753 2377777777
Q ss_pred HHH
Q 025712 244 WVQ 246 (249)
Q Consensus 244 ~~~ 246 (249)
++.
T Consensus 270 ~~~ 272 (384)
T cd08265 270 VTK 272 (384)
T ss_pred hcC
Confidence 653
No 46
>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH). Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo
Probab=100.00 E-value=1.3e-30 Score=230.68 Aligned_cols=224 Identities=32% Similarity=0.483 Sum_probs=189.5
Q ss_pred ceEEEEecCCCeEEEEecCCCC-CCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCCCC
Q 025712 15 NMAAWLLGIKTLKIQPYHLPTL-GPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLE 93 (249)
Q Consensus 15 ~~~~~~~~~~~l~~~~~~~p~~-~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~ 93 (249)
|+++++.+++.++++++|.|.+ +++||+|||+++++|+.|+....+.+. ...|.++|||++|+|+++|+++..++
T Consensus 1 m~~~~~~~~~~~~~~~~~~p~~~~~~evlv~v~a~~i~~~D~~~~~g~~~----~~~p~~~g~e~~G~V~~vG~~v~~~~ 76 (375)
T cd08282 1 MKAVVYGGPGNVAVEDVPDPKIEHPTDAIVRITTTAICGSDLHMYRGRTG----AEPGLVLGHEAMGEVEEVGSAVESLK 76 (375)
T ss_pred CceEEEecCCceeEEeCCCCCCCCCCeEEEEEEEEeeCHHHHHHHcCCCC----CCCCceeccccEEEEEEeCCCCCcCC
Confidence 4677788888999999999986 899999999999999999988876542 34688999999999999999999999
Q ss_pred CCCeEEEccCcCCCCCccccCCCCCCCcCccc---------cCCCCCCCceeEEEEecCC--ceEECCCCCChhh---hc
Q 025712 94 VGDRVALEPGISCGHCSLCKAGSYNLCPEMRF---------FGSPPTNGSLAHKVVHPAK--LCYKLPDNVSLEE---GA 159 (249)
Q Consensus 94 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~g~~~~~~~~~~~--~~~~ip~~~~~~~---aa 159 (249)
+||+|++.+...|+.|.+|..++..+|....+ .+.....|+|++|+.++.+ .++++|+++++.+ ++
T Consensus 77 ~Gd~V~~~~~~~~g~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~~~lP~~~~~~~~~~~a 156 (375)
T cd08282 77 VGDRVVVPFNVACGRCRNCKRGLTGVCLTVNPGRAGGAYGYVDMGPYGGGQAEYLRVPYADFNLLKLPDRDGAKEKDDYL 156 (375)
T ss_pred CCCEEEEeCCCCCCCCHHHHCcCcccCCCCCcccccccccccccCCCCCeeeeEEEeecccCcEEECCCCCChhhhhhee
Confidence 99999998888999999999999888865321 1112246999999999976 8999999999884 44
Q ss_pred cc-cchHHHHHHHHHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCCCcccHH
Q 025712 160 MC-EPLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWG 238 (249)
Q Consensus 160 ~~-~~~~~a~~~l~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~ 238 (249)
.+ ..+.++|+++..+.+.+|++|+|+|.|++|++++|++++.|+..+++++++++|.++++++|+ ..+++++ +++.
T Consensus 157 ~~~~~~~ta~~a~~~~~~~~g~~vlI~g~g~vg~~~~~~a~~~G~~~vi~~~~~~~~~~~~~~~g~-~~v~~~~--~~~~ 233 (375)
T cd08282 157 MLSDIFPTGWHGLELAGVQPGDTVAVFGAGPVGLMAAYSAILRGASRVYVVDHVPERLDLAESIGA-IPIDFSD--GDPV 233 (375)
T ss_pred eecchHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCC-eEeccCc--ccHH
Confidence 44 467899999877889999999999999999999999999998678889999999999999998 4566654 6777
Q ss_pred HHHHHHH
Q 025712 239 RYKMQWV 245 (249)
Q Consensus 239 ~~~~~~~ 245 (249)
+.+.+++
T Consensus 234 ~~i~~~~ 240 (375)
T cd08282 234 EQILGLE 240 (375)
T ss_pred HHHHHhh
Confidence 7777654
No 47
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=100.00 E-value=1.7e-30 Score=227.18 Aligned_cols=226 Identities=32% Similarity=0.523 Sum_probs=193.8
Q ss_pred ceEEEEecCCCeEEEEecCCCC-CCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCCCC
Q 025712 15 NMAAWLLGIKTLKIQPYHLPTL-GPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLE 93 (249)
Q Consensus 15 ~~~~~~~~~~~l~~~~~~~p~~-~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~ 93 (249)
|+++++.+++.+++++.+.|+| .++||+||+.++++|+.|+..+.+.+.. ...|.++|+|++|+|+++|++++.++
T Consensus 1 m~a~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~a~~i~~~d~~~~~g~~~~---~~~~~~~g~e~~G~V~~~G~~v~~~~ 77 (345)
T cd08286 1 MKALVYHGPGKISWEDRPKPTIQEPTDAIVKMLKTTICGTDLHILKGDVPT---VTPGRILGHEGVGVVEEVGSAVTNFK 77 (345)
T ss_pred CceEEEecCCceeEEecCCCCCCCCCeEEEEEEEeeecchhhHHHcCCCCC---CCCCceecccceEEEEEeccCccccC
Confidence 5678888888999999999986 8999999999999999999988775422 23478999999999999999999999
Q ss_pred CCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCC--ceEECCCCCChhhhcccc-chHHHHHH
Q 025712 94 VGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAK--LCYKLPDNVSLEEGAMCE-PLSVGVHA 170 (249)
Q Consensus 94 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~ip~~~~~~~aa~~~-~~~~a~~~ 170 (249)
+||+|++.+...|+.|.+|..++...|..-.+..+....|+|++|+.++.+ .++++|++++..+++.+. .+.+||.+
T Consensus 78 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~ 157 (345)
T cd08286 78 VGDRVLISCISSCGTCGYCRKGLYSHCESGGWILGNLIDGTQAEYVRIPHADNSLYKLPEGVDEEAAVMLSDILPTGYEC 157 (345)
T ss_pred CCCEEEECCcCCCCCChHHHCcCcccCCCcccccccccCCeeeeEEEcccccCceEECCCCCCHHHhhhccchhHHHHHH
Confidence 999999998889999999999988888765554333456999999999987 899999999998888665 56788876
Q ss_pred H-HHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCCCcccHHHHHHHHH
Q 025712 171 C-RRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGRYKMQWV 245 (249)
Q Consensus 171 l-~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~ 245 (249)
+ ...++.+++++||+|+|++|++++|+++.+|...++++++++++.++++++|++++++++. .++.+.+.+++
T Consensus 158 ~~~~~~~~~g~~vlI~g~g~~g~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~--~~~~~~i~~~~ 231 (345)
T cd08286 158 GVLNGKVKPGDTVAIVGAGPVGLAALLTAQLYSPSKIIMVDLDDNRLEVAKKLGATHTVNSAK--GDAIEQVLELT 231 (345)
T ss_pred HHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCCceecccc--ccHHHHHHHHh
Confidence 5 5678899999999999999999999999999447888988999999999999999998775 56766666654
No 48
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=99.98 E-value=1e-30 Score=227.99 Aligned_cols=214 Identities=40% Similarity=0.729 Sum_probs=184.1
Q ss_pred EEecCCCeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCCCCCCCeE
Q 025712 19 WLLGIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRV 98 (249)
Q Consensus 19 ~~~~~~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V 98 (249)
|+.+++.+++++.+.|.++++||+|||.++++|++|+..+.....+.....+|.++|+|++|+|+++|++++++++||+|
T Consensus 2 ~~~~~~~~~~~~~~~p~l~~~~v~I~v~~~~i~~~d~~~~~~~~~~~~~~~~p~~~g~e~~G~v~~vG~~v~~~~~Gd~V 81 (339)
T cd08232 2 VIHAAGDLRVEERPAPEPGPGEVRVRVAAGGICGSDLHYYQHGGFGTVRLREPMVLGHEVSGVVEAVGPGVTGLAPGQRV 81 (339)
T ss_pred eeccCCceEEEEcCCCCCCCCEEEEEEEEEEECcccHHHHcCCCCCcccccCCeecCccceEEEEeeCCCCCcCCCCCEE
Confidence 67788999999999999999999999999999999987663221111223467899999999999999999999999999
Q ss_pred EEccCcCCCCCccccCCCCCCCcCccccCCC----CCCCceeEEEEecCCceEECCCCCChhhhccccchHHHHHHHHHc
Q 025712 99 ALEPGISCGHCSLCKAGSYNLCPEMRFFGSP----PTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRA 174 (249)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~a~~~l~~~ 174 (249)
++.+...|++|.+|..|...+|.++...+.. ...|+|++|+.++.+.++++|+++++++|+...++.++|+++...
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~iP~~~~~~~aa~~~~~~~a~~~l~~~ 161 (339)
T cd08232 82 AVNPSRPCGTCDYCRAGRPNLCLNMRFLGSAMRFPHVQGGFREYLVVDASQCVPLPDGLSLRRAALAEPLAVALHAVNRA 161 (339)
T ss_pred EEccCCcCCCChHHhCcCcccCccccceeeccccCCCCCceeeEEEechHHeEECcCCCCHHHhhhcchHHHHHHHHHhc
Confidence 9998899999999999999999986444321 246999999999999999999999999988766777888888664
Q ss_pred CCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCC
Q 025712 175 NVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVST 232 (249)
Q Consensus 175 ~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~ 232 (249)
...++++|||.|+|++|++++|+++.+|+..++++++++++.++++++|++++++++.
T Consensus 162 ~~~~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~g~~~vi~~~~ 219 (339)
T cd08232 162 GDLAGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAMGADETVNLAR 219 (339)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCCCEEEcCCc
Confidence 4449999999988999999999999999967889988999999999999999998764
No 49
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=99.98 E-value=2e-30 Score=226.66 Aligned_cols=224 Identities=31% Similarity=0.508 Sum_probs=190.3
Q ss_pred ceEEEEecCCCeEEEEecCCCC-CCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCCCC
Q 025712 15 NMAAWLLGIKTLKIQPYHLPTL-GPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLE 93 (249)
Q Consensus 15 ~~~~~~~~~~~l~~~~~~~p~~-~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~ 93 (249)
|+++++.+++.+++++.|.|.| +++||+||+.++++|++|+....+.+. ...|.++|||++|+|+++|+++..++
T Consensus 1 m~~~~~~~~~~~~~~~~~~p~~~~~~ev~V~v~~~~i~~~d~~~~~g~~~----~~~~~~~g~e~~G~V~~vG~~v~~~~ 76 (345)
T cd08287 1 MRATVIHGPGDIRVEEVPDPVIEEPTDAVIRVVATCVCGSDLWPYRGVSP----TRAPAPIGHEFVGVVEEVGSEVTSVK 76 (345)
T ss_pred CceeEEecCCceeEEeCCCCCCCCCCeEEEEEeeeeecccchhhhcCCCC----CCCCcccccceEEEEEEeCCCCCccC
Confidence 5788888888999999999986 999999999999999999887766432 24578999999999999999999999
Q ss_pred CCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCC--ceEECCCCCChhhhcc------ccchH
Q 025712 94 VGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAK--LCYKLPDNVSLEEGAM------CEPLS 165 (249)
Q Consensus 94 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~ip~~~~~~~aa~------~~~~~ 165 (249)
+||+|++.+..+|++|.+|..++..+|......+ ....|+|++|+.++.+ .++++|+++++..+.+ ...+.
T Consensus 77 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~v~~~~~~~~~lP~~l~~~~~~~~~~~~l~~~~~ 155 (345)
T cd08287 77 PGDFVIAPFAISDGTCPFCRAGFTTSCVHGGFWG-AFVDGGQGEYVRVPLADGTLVKVPGSPSDDEDLLPSLLALSDVMG 155 (345)
T ss_pred CCCEEEeccccCCCCChhhhCcCcccCCCCCccc-CCCCCceEEEEEcchhhCceEECCCCCChhhhhhhhhHhhhcHHH
Confidence 9999998556789999999999999998754443 3467999999999875 9999999988732221 13567
Q ss_pred HHHHHHHHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCCCcccHHHHHHHHH
Q 025712 166 VGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGRYKMQWV 245 (249)
Q Consensus 166 ~a~~~l~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~ 245 (249)
+|++++...++.++++++|+|+|++|++++|+|+..|+..++++++++++.++++++|++++++++. +++.+.+.+++
T Consensus 156 ~a~~~~~~~~~~~g~~vlI~g~g~vg~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~ga~~v~~~~~--~~~~~~i~~~~ 233 (345)
T cd08287 156 TGHHAAVSAGVRPGSTVVVVGDGAVGLCAVLAAKRLGAERIIAMSRHEDRQALAREFGATDIVAERG--EEAVARVRELT 233 (345)
T ss_pred HHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCceEecCCc--ccHHHHHHHhc
Confidence 7888887788999999999999999999999999999966899988999999999999999998875 56777776654
No 50
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=99.98 E-value=1.8e-30 Score=226.75 Aligned_cols=225 Identities=33% Similarity=0.549 Sum_probs=192.1
Q ss_pred ceEEEEecCCCeEEEEecCCCCC-CCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCCCC
Q 025712 15 NMAAWLLGIKTLKIQPYHLPTLG-PQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLE 93 (249)
Q Consensus 15 ~~~~~~~~~~~l~~~~~~~p~~~-~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~ 93 (249)
|+++++.++..+++++++.|.|. ++||+||+.++++|+.|.....+.+. ...|.++|+|++|+|+++|++++.++
T Consensus 1 ~~a~~~~~~~~~~~~~~~~p~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~----~~~~~~~g~e~~G~V~~vG~~v~~~~ 76 (344)
T cd08284 1 MKAVVFKGPGDVRVEEVPIPQIQDPTDAIVKVTAAAICGSDLHIYRGHIP----STPGFVLGHEFVGEVVEVGPEVRTLK 76 (344)
T ss_pred CeeEEEecCCCceEEeccCCCCCCCCeEEEEEEEeeccccchhhhcCCCC----CCCCcccccceEEEEEeeCCCccccC
Confidence 46788888889999999999885 99999999999999999988766432 34578999999999999999999999
Q ss_pred CCCeEEEccCcCCCCCccccCCCCCCCcCcccc---CCCCCCCceeEEEEecCC--ceEECCCCCChhhhcccc-chHHH
Q 025712 94 VGDRVALEPGISCGHCSLCKAGSYNLCPEMRFF---GSPPTNGSLAHKVVHPAK--LCYKLPDNVSLEEGAMCE-PLSVG 167 (249)
Q Consensus 94 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g~~~~~~~~~~~--~~~~ip~~~~~~~aa~~~-~~~~a 167 (249)
+||+|++.+..+|+.|.+|..+....|...... +....+|+|++|+.++.+ .++++|+++++++++.+. .+.+|
T Consensus 77 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~p~~l~~~~a~~l~~~~~ta 156 (344)
T cd08284 77 VGDRVVSPFTIACGECFYCRRGQSGRCAKGGLFGYAGSPNLDGAQAEYVRVPFADGTLLKLPDGLSDEAALLLGDILPTG 156 (344)
T ss_pred CCCEEEEcccCCCCCChHHhCcCcccCCCCccccccccCCCCCceeEEEEcccccCceEECCCCCCHHHhhhhcCchHHH
Confidence 999999988889999999999999999765444 222347999999999865 999999999998888655 68899
Q ss_pred HHHHHHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCCCcccHHHHHHHHHH
Q 025712 168 VHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGRYKMQWVQ 246 (249)
Q Consensus 168 ~~~l~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~~ 246 (249)
|++++..+..++++|+|+|+|++|++++++++.+|+.+++++++++++.++++++|++ .++++. .++.+.+.++++
T Consensus 157 ~~~~~~~~~~~~~~vlI~g~g~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~~g~~-~~~~~~--~~~~~~l~~~~~ 232 (344)
T cd08284 157 YFGAKRAQVRPGDTVAVIGCGPVGLCAVLSAQVLGAARVFAVDPVPERLERAAALGAE-PINFED--AEPVERVREATE 232 (344)
T ss_pred HhhhHhcCCccCCEEEEECCcHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHHhCCe-EEecCC--cCHHHHHHHHhC
Confidence 9998778889999999999999999999999999975788888899999999999986 455554 567777776553
No 51
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=99.98 E-value=2.5e-30 Score=225.38 Aligned_cols=223 Identities=39% Similarity=0.662 Sum_probs=192.9
Q ss_pred ceEEEEecCCCeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCCCCC
Q 025712 15 NMAAWLLGIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEV 94 (249)
Q Consensus 15 ~~~~~~~~~~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~ 94 (249)
|+++++..++.+++.+++.|.++++||+|||.++++|+.|+....+.+.. ..+|.++|+|++|+|+.+|++++.+++
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~l~~~d~~~~~~~~~~---~~~~~~~g~e~~G~V~~~G~~v~~~~~ 77 (337)
T cd08261 1 MKALVCEKPGRLEVVDIPEPVPGAGEVLVRVKRVGICGSDLHIYHGRNPF---ASYPRILGHELSGEVVEVGEGVAGLKV 77 (337)
T ss_pred CeEEEEeCCCceEEEECCCCCCCCCeEEEEEEEEeEcccChHHHcCCCCc---CCCCcccccccEEEEEEeCCCCCCCCC
Confidence 46777888889999999999999999999999999999999887765321 244778999999999999999999999
Q ss_pred CCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhccccchHHHHHHHHHc
Q 025712 95 GDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRA 174 (249)
Q Consensus 95 Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~a~~~l~~~ 174 (249)
||+|++.+...|++|..|+.++..+|......+ ....|+|++|+.++.+ ++++|+++++++++++..+.+++++++..
T Consensus 78 Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~v~v~~~-~~~~p~~~~~~~aa~~~~~~~a~~~~~~~ 155 (337)
T cd08261 78 GDRVVVDPYISCGECYACRKGRPNCCENLQVLG-VHRDGGFAEYIVVPAD-ALLVPEGLSLDQAALVEPLAIGAHAVRRA 155 (337)
T ss_pred CCEEEECCCCCCCCChhhhCcCcccCCCCCeee-ecCCCcceeEEEechh-eEECCCCCCHHHhhhhchHHHHHHHHHhc
Confidence 999999888899999999999999995332221 2246999999999999 99999999999988776677888777778
Q ss_pred CCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCCCcccHHHHHHHHH
Q 025712 175 NVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGRYKMQWV 245 (249)
Q Consensus 175 ~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~ 245 (249)
++.+++++||+|+|.+|++++|+|+.+|+ +++++.+++++.++++++|++++++++. .++.+.+.+++
T Consensus 156 ~l~~g~~vLI~g~g~vG~~a~~lA~~~g~-~v~~~~~s~~~~~~~~~~g~~~v~~~~~--~~~~~~l~~~~ 223 (337)
T cd08261 156 GVTAGDTVLVVGAGPIGLGVIQVAKARGA-RVIVVDIDDERLEFARELGADDTINVGD--EDVAARLRELT 223 (337)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEECCCHHHHHHHHHhCCCEEecCcc--cCHHHHHHHHh
Confidence 89999999999989999999999999999 7888888999999999999999998776 56777777654
No 52
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=99.98 E-value=1.4e-30 Score=225.39 Aligned_cols=208 Identities=28% Similarity=0.494 Sum_probs=183.3
Q ss_pred ceEEEEecCCCeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCCCCC
Q 025712 15 NMAAWLLGIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEV 94 (249)
Q Consensus 15 ~~~~~~~~~~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~ 94 (249)
|+++++.+++++++++.+.|.++++||+||+.++++|+.|.....+.+ ..|.++|+|++|+|+++|++ +++
T Consensus 1 ~~a~~~~~~~~~~~~~~~~p~~~~~~vlV~v~a~~i~~~d~~~~~g~~------~~~~~~G~e~~G~Vv~~G~~---~~~ 71 (319)
T cd08242 1 MKALVLDGGLDLRVEDLPKPEPPPGEALVRVLLAGICNTDLEIYKGYY------PFPGVPGHEFVGIVEEGPEA---ELV 71 (319)
T ss_pred CeeEEEeCCCcEEEEECCCCCCCCCeEEEEEEEEEEccccHHHHcCCC------CCCCccCceEEEEEEEeCCC---CCC
Confidence 578888888899999999999999999999999999999998877643 35789999999999999988 679
Q ss_pred CCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhccccchHHHHHHHHHc
Q 025712 95 GDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRA 174 (249)
Q Consensus 95 Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~a~~~l~~~ 174 (249)
||+|...+...|++|.+|..+.+.+|.+....+.....|+|++|+.++.+.++++|++++.++++.+.+..+++..++..
T Consensus 72 G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~lP~~~~~~~aa~~~~~~~~~~~~~~~ 151 (319)
T cd08242 72 GKRVVGEINIACGRCEYCRRGLYTHCPNRTVLGIVDRDGAFAEYLTLPLENLHVVPDLVPDEQAVFAEPLAAALEILEQV 151 (319)
T ss_pred CCeEEECCCcCCCCChhhhCcCcccCCCCcccCccCCCCceEEEEEechHHeEECcCCCCHHHhhhhhHHHHHHHHHHhc
Confidence 99999988888999999999999888876655432357999999999999999999999998888655555677777778
Q ss_pred CCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCC
Q 025712 175 NVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVST 232 (249)
Q Consensus 175 ~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~ 232 (249)
+++++++++|+|+|++|++++|+|+.+|+ .+++++.++++.++++++|++.+++++.
T Consensus 152 ~~~~g~~vlV~g~g~vg~~~~q~a~~~G~-~vi~~~~~~~~~~~~~~~g~~~~~~~~~ 208 (319)
T cd08242 152 PITPGDKVAVLGDGKLGLLIAQVLALTGP-DVVLVGRHSEKLALARRLGVETVLPDEA 208 (319)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHHcCCcEEeCccc
Confidence 89999999999999999999999999999 5888888999999999999998887753
No 53
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=99.98 E-value=4.5e-30 Score=224.16 Aligned_cols=225 Identities=39% Similarity=0.685 Sum_probs=196.8
Q ss_pred ceEEEEecCCCeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCCCCC
Q 025712 15 NMAAWLLGIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEV 94 (249)
Q Consensus 15 ~~~~~~~~~~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~ 94 (249)
|+++++.+++.+.+++.+.|++.+++|+|||.++++|+.|+....+.+. +...|.++|+|++|+|+++|++++.+++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~l~~~~v~i~v~~~~l~~~d~~~~~g~~~---~~~~~~~~g~~~~G~V~~~G~~v~~~~~ 77 (343)
T cd08235 1 MKAAVLHGPNDVRLEEVPVPEPGPGEVLVKVRACGICGTDVKKIRGGHT---DLKPPRILGHEIAGEIVEVGDGVTGFKV 77 (343)
T ss_pred CeEEEEecCCceEEEEccCCCCCCCeEEEEEEEeeeccccHHHHcCCCc---cCCCCcccccceEEEEEeeCCCCCCCCC
Confidence 4788888888899999999999999999999999999999988776542 2345778999999999999999999999
Q ss_pred CCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCc-----eEECCCCCChhhhccccchHHHHH
Q 025712 95 GDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKL-----CYKLPDNVSLEEGAMCEPLSVGVH 169 (249)
Q Consensus 95 Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~ip~~~~~~~aa~~~~~~~a~~ 169 (249)
||+|++.+...|+.|.+|..+...+|......+. ...|+|++|+.++.+. ++++|+++++.+++++..+.+|++
T Consensus 78 Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~v~v~~~~~~~~~~~~lP~~~~~~~aa~~~~~~~a~~ 156 (343)
T cd08235 78 GDRVFVAPHVPCGECHYCLRGNENMCPNYKKFGN-LYDGGFAEYVRVPAWAVKRGGVLKLPDNVSFEEAALVEPLACCIN 156 (343)
T ss_pred CCEEEEccCCCCCCChHHHCcCcccCCCcceecc-CCCCcceeeEEecccccccccEEECCCCCCHHHHHhhhHHHHHHH
Confidence 9999999888999999999999999987654442 3569999999999998 999999999999887667778998
Q ss_pred HHHHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCCCcccHHHHHHHHH
Q 025712 170 ACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGRYKMQWV 245 (249)
Q Consensus 170 ~l~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~ 245 (249)
+++..++.+|++|+|+|+|++|++++++|+..|++.++++++++++.+.++++|+++++++++ .++.+.+++++
T Consensus 157 ~l~~~~~~~g~~VlV~g~g~vg~~~~~la~~~g~~~v~~~~~s~~~~~~~~~~g~~~~~~~~~--~~~~~~i~~~~ 230 (343)
T cd08235 157 AQRKAGIKPGDTVLVIGAGPIGLLHAMLAKASGARKVIVSDLNEFRLEFAKKLGADYTIDAAE--EDLVEKVRELT 230 (343)
T ss_pred HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCcEEecCCc--cCHHHHHHHHh
Confidence 887778999999999998999999999999999954888888999999999999999988775 67777776654
No 54
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=99.97 E-value=4.2e-30 Score=223.92 Aligned_cols=224 Identities=27% Similarity=0.430 Sum_probs=190.5
Q ss_pred ceEEEEecCCCeE-EEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCCCC
Q 025712 15 NMAAWLLGIKTLK-IQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLE 93 (249)
Q Consensus 15 ~~~~~~~~~~~l~-~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~ 93 (249)
||++++..++... +++.|.|.+.++||+|||.++++|++|+....+... ...|.++|+|++|+|+.+|++++.++
T Consensus 1 mka~~~~~~~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~d~~~~~g~~~----~~~~~~~g~e~~G~V~~~G~~v~~~~ 76 (338)
T PRK09422 1 MKAAVVNKDHTGDVVVEKTLRPLKHGEALVKMEYCGVCHTDLHVANGDFG----DKTGRILGHEGIGIVKEVGPGVTSLK 76 (338)
T ss_pred CeEEEecCCCCCceEEEecCCCCCCCeEEEEEEEEeechhHHHHHcCCCC----CCCCccCCcccceEEEEECCCCccCC
Confidence 6788888877655 899999999999999999999999999988766431 23467899999999999999999999
Q ss_pred CCCeEEEccC-cCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhcccc-chHHHHHHH
Q 025712 94 VGDRVALEPG-ISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHAC 171 (249)
Q Consensus 94 ~Gd~V~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-~~~~a~~~l 171 (249)
+||+|++.+. ..|+.|.+|..+..++|......+ ....|+|++|+.++.+.++++|+++++.+++.+. ...++|+++
T Consensus 77 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~~ 155 (338)
T PRK09422 77 VGDRVSIAWFFEGCGHCEYCTTGRETLCRSVKNAG-YTVDGGMAEQCIVTADYAVKVPEGLDPAQASSITCAGVTTYKAI 155 (338)
T ss_pred CCCEEEEccCCCCCCCChhhcCCCcccCCCccccC-ccccCcceeEEEEchHHeEeCCCCCCHHHeehhhcchhHHHHHH
Confidence 9999997554 689999999999999998655333 2357999999999999999999999999888666 567889888
Q ss_pred HHcCCCCCCeEEEEcCChHHHHHHHHHHH-cCCCeEEEEeCChhHHHHHHHcCCCEEecCCCCcccHHHHHHHHH
Q 025712 172 RRANVGPETNVMIMGSGPIGLVTLLAARA-FGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGRYKMQWV 245 (249)
Q Consensus 172 ~~~~~~~g~~vlI~G~g~vG~~ai~la~~-~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~ 245 (249)
+...+++|+++||+|+|++|++++++++. .|+ .++++++++++.+.++++|++.+++++. ..++.+.+++.+
T Consensus 156 ~~~~~~~g~~vlV~g~g~vG~~~~~la~~~~g~-~v~~~~~~~~~~~~~~~~g~~~v~~~~~-~~~~~~~v~~~~ 228 (338)
T PRK09422 156 KVSGIKPGQWIAIYGAGGLGNLALQYAKNVFNA-KVIAVDINDDKLALAKEVGADLTINSKR-VEDVAKIIQEKT 228 (338)
T ss_pred HhcCCCCCCEEEEECCcHHHHHHHHHHHHhCCC-eEEEEeCChHHHHHHHHcCCcEEecccc-cccHHHHHHHhc
Confidence 77889999999999999999999999998 599 7999999999999999999999988653 144556665543
No 55
>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=99.97 E-value=7.8e-30 Score=222.56 Aligned_cols=206 Identities=33% Similarity=0.549 Sum_probs=177.7
Q ss_pred ceEEEEecCCCeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhccccc--------ccCCCCCceeccceEEEEEEec
Q 025712 15 NMAAWLLGIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCA--------NFIVKKPMVIGHECAGIIEEVG 86 (249)
Q Consensus 15 ~~~~~~~~~~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~--------~~~~~~p~~~G~e~~G~V~~vG 86 (249)
||++++.++ .+++++.+.|+++++||+|||.++++|+.|+....+.... .....+|.++|+|++|+|+++|
T Consensus 1 m~a~~~~~~-~~~~~~~~~p~~~~~~v~V~v~~~~~~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG 79 (341)
T cd08262 1 MRAAVFRDG-PLVVRDVPDPEPGPGQVLVKVLACGICGSDLHATAHPEAMVDDAGGPSLMDLGADIVLGHEFCGEVVDYG 79 (341)
T ss_pred CceEEEeCC-ceEEEecCCCCCCCCeEEEEEEEEEEcccchHHHcCCCcccccccccccccCCCCcccccceeEEEEEeC
Confidence 467777776 8999999999999999999999999999999888763210 0123457899999999999999
Q ss_pred CCCCC-CCCCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhccccchH
Q 025712 87 SEVKS-LEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLS 165 (249)
Q Consensus 87 ~~v~~-~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~ 165 (249)
++++. +++||+|++++...|+.|.+|..+.. ....|+|++|+.++.+.++++|++++++++++...+.
T Consensus 80 ~~v~~~~~~Gd~V~~~~~~~~~~~~~~~~~~~-----------~~~~g~~~~~~~v~~~~~~~lP~~~s~~~a~~~~~~~ 148 (341)
T cd08262 80 PGTERKLKVGTRVTSLPLLLCGQGASCGIGLS-----------PEAPGGYAEYMLLSEALLLRVPDGLSMEDAALTEPLA 148 (341)
T ss_pred CCCcCCCCCCCEEEecCCcCCCCChhhhCCCC-----------cCCCCceeeeEEechHHeEECCCCCCHHHhhhhhhHH
Confidence 99987 99999999999999999999943211 1256999999999999999999999998887656777
Q ss_pred HHHHHHHHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCC
Q 025712 166 VGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVST 232 (249)
Q Consensus 166 ~a~~~l~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~ 232 (249)
+||+++...+++++++|||+|+|++|.+++|+++.+|+..++++++++++.++++++|++++++++.
T Consensus 149 ~a~~~~~~~~~~~g~~VlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~i~~~~ 215 (341)
T cd08262 149 VGLHAVRRARLTPGEVALVIGCGPIGLAVIAALKARGVGPIVASDFSPERRALALAMGADIVVDPAA 215 (341)
T ss_pred HHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCCcEEEcCCC
Confidence 8888877788999999999999999999999999999976888888999999999999999998765
No 56
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=99.97 E-value=7.8e-30 Score=222.73 Aligned_cols=222 Identities=40% Similarity=0.696 Sum_probs=194.5
Q ss_pred ceEEEEecCCCeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCCCCC
Q 025712 15 NMAAWLLGIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEV 94 (249)
Q Consensus 15 ~~~~~~~~~~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~ 94 (249)
|+++++.++..+.+++.+.|++.++||+||+.++++|+.|.....+.+ ....|.++|+|++|+|+.+|++++.+++
T Consensus 1 ~~a~~~~~~~~l~~~~~~~~~l~~~~v~v~v~~~~~n~~d~~~~~~~~----~~~~~~~~g~~~~G~V~~~g~~v~~~~~ 76 (343)
T cd08236 1 MKALVLTGPGDLRYEDIPKPEPGPGEVLVKVKACGICGSDIPRYLGTG----AYHPPLVLGHEFSGTVEEVGSGVDDLAV 76 (343)
T ss_pred CeeEEEecCCceeEEecCCCCCCCCeEEEEEEEEEECccchHhhcCCC----CCCCCcccCcceEEEEEEECCCCCcCCC
Confidence 578888888889999999999999999999999999999998776543 2345788999999999999999999999
Q ss_pred CCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhccccchHHHHHHHHHc
Q 025712 95 GDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRA 174 (249)
Q Consensus 95 Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~a~~~l~~~ 174 (249)
||+|++++...|+.|.+|..+....|....+.+. ...|+|++|+.++.+.++++|+++++.+++++....++|.++...
T Consensus 77 Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~lP~~~~~~~aa~~~~~~ta~~~l~~~ 155 (343)
T cd08236 77 GDRVAVNPLLPCGKCEYCKKGEYSLCSNYDYIGS-RRDGAFAEYVSVPARNLIKIPDHVDYEEAAMIEPAAVALHAVRLA 155 (343)
T ss_pred CCEEEEcCCCCCCCChhHHCcChhhCCCcceEec-ccCCcccceEEechHHeEECcCCCCHHHHHhcchHHHHHHHHHhc
Confidence 9999999888999999999999999988765553 367999999999999999999999999988777778999988778
Q ss_pred CCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCCCcccHHHHHHHH
Q 025712 175 NVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGRYKMQW 244 (249)
Q Consensus 175 ~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~ 244 (249)
.++++++++|+|+|.+|++++|+|+.+|++.++++++++++.++++++|++.+++++. +. .+.+.+.
T Consensus 156 ~~~~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~~~g~~~~~~~~~--~~-~~~~~~~ 222 (343)
T cd08236 156 GITLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVARELGADDTINPKE--ED-VEKVREL 222 (343)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCCEEecCcc--cc-HHHHHHH
Confidence 8899999999998999999999999999955888888999999999999999998775 33 4555444
No 57
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=99.97 E-value=1.3e-29 Score=223.44 Aligned_cols=225 Identities=35% Similarity=0.500 Sum_probs=192.6
Q ss_pred ceEEEEecC-CCeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCCCC
Q 025712 15 NMAAWLLGI-KTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLE 93 (249)
Q Consensus 15 ~~~~~~~~~-~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~ 93 (249)
|+++++.++ ..+++++++.|.+.++||+|++.++++|+.|...+.+.+. ..+|.++|+|++|+|+++|+++..++
T Consensus 1 m~a~~~~~~~~~~~~~~~~~p~~~~~~v~i~v~~~~i~~~d~~~~~g~~~----~~~~~~~g~e~~G~V~~vG~~v~~~~ 76 (363)
T cd08279 1 MRAAVLHEVGKPLEIEEVELDDPGPGEVLVRIAAAGLCHSDLHVVTGDLP----APLPAVLGHEGAGVVEEVGPGVTGVK 76 (363)
T ss_pred CeEEEEecCCCCceEEEeeCCCCCCCeEEEEEEEeecCcHHHHHhcCCCC----CCCCccccccceEEEEEeCCCccccC
Confidence 578888876 5789999999999999999999999999999988776432 35678999999999999999999999
Q ss_pred CCCeEEEccCcCCCCCccccCCCCCCCcCcccc---------------CC----CCCCCceeEEEEecCCceEECCCCCC
Q 025712 94 VGDRVALEPGISCGHCSLCKAGSYNLCPEMRFF---------------GS----PPTNGSLAHKVVHPAKLCYKLPDNVS 154 (249)
Q Consensus 94 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~----~~~~g~~~~~~~~~~~~~~~ip~~~~ 154 (249)
+||+|++.+...|++|.+|+.+....|...... |. ....|+|++|+.++.+.++++|++++
T Consensus 77 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~ 156 (363)
T cd08279 77 PGDHVVLSWIPACGTCRYCSRGQPNLCDLGAGILGGQLPDGTRRFTADGEPVGAMCGLGTFAEYTVVPEASVVKIDDDIP 156 (363)
T ss_pred CCCEEEECCCCCCCCChhhcCCCcccCcccccccccccCCCcccccccCccccccccCccceeeEEeccccEEECCCCCC
Confidence 999999999999999999999999999653210 00 02468999999999999999999999
Q ss_pred hhhhcccc-chHHHHHHH-HHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCC
Q 025712 155 LEEGAMCE-PLSVGVHAC-RRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVST 232 (249)
Q Consensus 155 ~~~aa~~~-~~~~a~~~l-~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~ 232 (249)
+++++++. ...+||.++ +...+.+++++||+|+|++|++++++|+..|++.++++++++++.++++++|++++++.+.
T Consensus 157 ~~~aa~~~~~~~ta~~~~~~~~~~~~g~~vLI~g~g~vG~a~i~lak~~G~~~Vi~~~~~~~~~~~~~~~g~~~vv~~~~ 236 (363)
T cd08279 157 LDRAALLGCGVTTGVGAVVNTARVRPGDTVAVIGCGGVGLNAIQGARIAGASRIIAVDPVPEKLELARRFGATHTVNASE 236 (363)
T ss_pred hHHeehhcchhHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHhCCeEEeCCCC
Confidence 99988776 467888776 5578899999999998999999999999999955899999999999999999999988765
Q ss_pred CcccHHHHHHHHH
Q 025712 233 DIEMWGRYKMQWV 245 (249)
Q Consensus 233 ~~~~~~~~~~~~~ 245 (249)
.++.+++.+++
T Consensus 237 --~~~~~~l~~~~ 247 (363)
T cd08279 237 --DDAVEAVRDLT 247 (363)
T ss_pred --ccHHHHHHHHc
Confidence 56777776654
No 58
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=99.97 E-value=2.4e-30 Score=223.33 Aligned_cols=185 Identities=22% Similarity=0.263 Sum_probs=150.8
Q ss_pred ceEEEEecCCCeEEEEecCCCCCCCcEEEEEeEEecc-cchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCCCC
Q 025712 15 NMAAWLLGIKTLKIQPYHLPTLGPQDVKVRIKALGIC-GSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLE 93 (249)
Q Consensus 15 ~~~~~~~~~~~l~~~~~~~p~~~~~eVlV~v~~~~i~-~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~ 93 (249)
++++++.+|+.+++++.|.|+|+++||||||++++|| ++|+.++.|.+.......+|.++|||++|+|+++|+++ +|+
T Consensus 2 ~ka~~~~~~~~l~~~e~~~p~~~~~evlVkv~~~gi~~~~D~~~~~G~~~~~~~~~~P~i~GhE~~G~V~~vG~~v-~~~ 80 (308)
T TIGR01202 2 TQAIVLSGPNQIELREVTLTPPSPGDLVVEIWYSGISTGTEKLFWNGLMPPFPGMGYPLVPGYESVGRVVEAGPDT-GFR 80 (308)
T ss_pred ceEEEEeCCCeEEEEEecCCCCCCCeEEEEEEEEeeccCchhHHhcCCCCCCCCCCCCccCcceeEEEEEEecCCC-CCC
Confidence 6788888999999999999999999999999999997 69988877754221113579999999999999999998 699
Q ss_pred CCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhccccchHHHHHHHHH
Q 025712 94 VGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRR 173 (249)
Q Consensus 94 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~a~~~l~~ 173 (249)
+||+|+.. |..|..|.. ...|+|+||+.++.+.++++|++++++. +++....+||++++.
T Consensus 81 vGdrV~~~----~~~c~~~~~---------------~~~G~~aey~~v~~~~~~~ip~~~~~~~-a~~~~~~~a~~~~~~ 140 (308)
T TIGR01202 81 PGDRVFVP----GSNCYEDVR---------------GLFGGASKRLVTPASRVCRLDPALGPQG-ALLALAATARHAVAG 140 (308)
T ss_pred CCCEEEEe----Ccccccccc---------------ccCCcccceEEcCHHHceeCCCCCCHHH-HhhhHHHHHHHHHHh
Confidence 99999863 222322211 1359999999999999999999998764 555567899999866
Q ss_pred cCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHH
Q 025712 174 ANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN 221 (249)
Q Consensus 174 ~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~ 221 (249)
. ..++++++|+|+|++|++++|+++++|++.+++++.++++++.+++
T Consensus 141 ~-~~~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~ 187 (308)
T TIGR01202 141 A-EVKVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATG 187 (308)
T ss_pred c-ccCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhh
Confidence 4 3468999999999999999999999999767778878778776643
No 59
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=99.97 E-value=1.5e-29 Score=221.72 Aligned_cols=228 Identities=29% Similarity=0.435 Sum_probs=191.2
Q ss_pred ceEEEEecCC-CeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhccccc---------ccCCCCCceeccceEEEEEE
Q 025712 15 NMAAWLLGIK-TLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCA---------NFIVKKPMVIGHECAGIIEE 84 (249)
Q Consensus 15 ~~~~~~~~~~-~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~---------~~~~~~p~~~G~e~~G~V~~ 84 (249)
||++++..++ .++++++|.|+++++||+||+.++++|++|+....+.+.. .....+|.++|+|++|+|++
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~p~~~~~ev~V~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~ 80 (350)
T cd08240 1 MKAAAVVEPGKPLEEVEIDTPKPPGTEVLVKVTACGVCHSDLHIWDGGYDLGGGKTMSLDDRGVKLPLVLGHEIVGEVVA 80 (350)
T ss_pred CeeEEeccCCCCceEEecCCCCCCCCeEEEEEEEEecCchhHHHHcCCCCccccccccccccCCCCCcccccceeEEEEe
Confidence 5677776554 4899999999999999999999999999999887663210 00134567899999999999
Q ss_pred ecCCCCCCCCCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhcccc-c
Q 025712 85 VGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-P 163 (249)
Q Consensus 85 vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-~ 163 (249)
+|++++++++||+|++++...|++|.+|..++..+|......+. ...|+|++|+.++.+.++++|+++++.+++.+. .
T Consensus 81 vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~p~~~s~~~aa~l~~~ 159 (350)
T cd08240 81 VGPDAADVKVGDKVLVYPWIGCGECPVCLAGDENLCAKGRALGI-FQDGGYAEYVIVPHSRYLVDPGGLDPALAATLACS 159 (350)
T ss_pred eCCCCCCCCCCCEEEECCcCCCCCChHHHCcCcccCCCCCceee-eccCcceeeEEecHHHeeeCCCCCCHHHeehhhch
Confidence 99999999999999999999999999999999999976443332 257999999999999999999999999888665 5
Q ss_pred hHHHHHHHHH-cCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCCCcccHHHHHH
Q 025712 164 LSVGVHACRR-ANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGRYKM 242 (249)
Q Consensus 164 ~~~a~~~l~~-~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~ 242 (249)
+.+||++++. ....++++++|+|+|++|++++|+|+..|++.++++++++++.+.++++|++.+++.+. .++.+.+.
T Consensus 160 ~~tA~~~~~~~~~~~~~~~vlI~g~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~ 237 (350)
T cd08240 160 GLTAYSAVKKLMPLVADEPVVIIGAGGLGLMALALLKALGPANIIVVDIDEAKLEAAKAAGADVVVNGSD--PDAAKRII 237 (350)
T ss_pred hhhHHHHHHhcccCCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHhCCcEEecCCC--ccHHHHHH
Confidence 7899998865 44568999999999999999999999999977888889999999999999998887654 56666666
Q ss_pred HHH
Q 025712 243 QWV 245 (249)
Q Consensus 243 ~~~ 245 (249)
+..
T Consensus 238 ~~~ 240 (350)
T cd08240 238 KAA 240 (350)
T ss_pred HHh
Confidence 543
No 60
>TIGR01751 crot-CoA-red crotonyl-CoA reductase. The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.
Probab=99.97 E-value=1.8e-29 Score=225.20 Aligned_cols=219 Identities=23% Similarity=0.256 Sum_probs=184.0
Q ss_pred ccceEEEEec-----C-CCeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhccccc-------ccCCCCC-ceeccce
Q 025712 13 NQNMAAWLLG-----I-KTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCA-------NFIVKKP-MVIGHEC 78 (249)
Q Consensus 13 ~~~~~~~~~~-----~-~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~-------~~~~~~p-~~~G~e~ 78 (249)
.+|+++++.. | +.+++.++|.|.++++||+||+.++++|+.|+....+.... ......| .++|||+
T Consensus 6 ~~~~a~~~~~~~~~~~~~~~~~~~~~~p~l~~~evlV~v~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~G~e~ 85 (398)
T TIGR01751 6 ETMYAFAIREERDGDPRQAIQLEVVPVPELGPGEVLVAVMAAGVNYNNVWAALGEPVSTFAFLRKYGRDDLPFHIIGSDA 85 (398)
T ss_pred hhhhheEEecccCCCcccceEEeecCCCCCCCCeEEEEEEEEecCchhhhhhcCCccchhhhhcccCCCCCCceecccce
Confidence 4577777742 2 46999999999999999999999999999997765442210 0001233 3799999
Q ss_pred EEEEEEecCCCCCCCCCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhh
Q 025712 79 AGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEG 158 (249)
Q Consensus 79 ~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~a 158 (249)
+|+|+++|++++.+++||+|++.+...|++|.+|+.+.+++|......+.....|+|++|+.++...++++|++++++++
T Consensus 86 ~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~ae~~~v~~~~~~~vP~~l~~~~a 165 (398)
T TIGR01751 86 SGVVWRVGPGVTRWKVGDEVVASCLQVDLTAPDGRVGDPMLSSEQRIWGYETNFGSFAEFALVKDYQLMPKPKHLTWEEA 165 (398)
T ss_pred EEEEEEeCCCCCCCCCCCEEEEccccccCCchhhccCccccccccccccccCCCccceEEEEechHHeEECCCCCCHHHH
Confidence 99999999999999999999999999999999999999999987655554456799999999999999999999999988
Q ss_pred cccc-chHHHHHHHH---HcCCCCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCC
Q 025712 159 AMCE-PLSVGVHACR---RANVGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVST 232 (249)
Q Consensus 159 a~~~-~~~~a~~~l~---~~~~~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~ 232 (249)
+.+. ...++|.++. ..++.++++++|+| +|++|++++++++.+|+ .++.+++++++.+.++++|+++++|++.
T Consensus 166 a~~~~~~~ta~~al~~~~~~~~~~g~~vlV~Ga~g~vG~~ai~~ak~~G~-~vi~~~~~~~~~~~~~~~g~~~~v~~~~ 243 (398)
T TIGR01751 166 ACPGLTGATAYRQLVGWNPATVKPGDNVLIWGAAGGLGSYATQLARAGGG-NPVAVVSSPEKAEYCRELGAEAVIDRND 243 (398)
T ss_pred hhccchHHHHHHHHhhhhccCCCCCCEEEEEcCCcHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHHcCCCEEecCCC
Confidence 8655 6778998874 36789999999998 59999999999999999 6777778999999999999999998764
No 61
>PRK13771 putative alcohol dehydrogenase; Provisional
Probab=99.97 E-value=2.5e-29 Score=218.73 Aligned_cols=211 Identities=28% Similarity=0.437 Sum_probs=183.9
Q ss_pred ceEEEEecCCC-eEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCCCC
Q 025712 15 NMAAWLLGIKT-LKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLE 93 (249)
Q Consensus 15 ~~~~~~~~~~~-l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~ 93 (249)
|+++++.++++ +++++.|.|.+.++|++||+.++++|+.|+....+... ...+|.++|+|++|+|+.+|++++.++
T Consensus 1 m~a~~~~~~~~~~~~~~~~~~~~~~~~v~V~v~~~~i~~~d~~~~~g~~~---~~~~~~~~g~e~~G~v~~~g~~~~~~~ 77 (334)
T PRK13771 1 MKAVILPGFKQGYRIEEVPDPKPGKDEVVIKVNYAGLCYRDLLQLQGFYP---RMKYPVILGHEVVGTVEEVGENVKGFK 77 (334)
T ss_pred CeeEEEcCCCCCcEEEeCCCCCCCCCeEEEEEEEEeechhhHHHhcCCCC---CCCCCeeccccceEEEEEeCCCCccCC
Confidence 57888888875 99999999999999999999999999999987766431 135578899999999999999998899
Q ss_pred CCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhcccc-chHHHHHHHH
Q 025712 94 VGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHACR 172 (249)
Q Consensus 94 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-~~~~a~~~l~ 172 (249)
+||+|++.+...|++|.+|..+.+++|......+. ...|+|++|+.++.+.++++|+++++.+++.+. .+.++|+++.
T Consensus 78 ~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~lp~~~~~~~~a~l~~~~~~a~~~~~ 156 (334)
T PRK13771 78 PGDRVASLLYAPDGTCEYCRSGEEAYCKNRLGYGE-ELDGFFAEYAKVKVTSLVKVPPNVSDEGAVIVPCVTGMVYRGLR 156 (334)
T ss_pred CCCEEEECCCCCCcCChhhcCCCcccCcccccccc-ccCceeeeeeecchhceEECCCCCCHHHhhcccchHHHHHHHHH
Confidence 99999998888999999999999999988665543 357999999999999999999999998888666 5778898886
Q ss_pred HcCCCCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCC
Q 025712 173 RANVGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVS 231 (249)
Q Consensus 173 ~~~~~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~ 231 (249)
...+.++++++|+| +|.+|++++++++.+|+ .++++++++++.+.++++ ++++++++
T Consensus 157 ~~~~~~~~~vlI~g~~g~~g~~~~~la~~~g~-~vi~~~~~~~~~~~~~~~-~~~~~~~~ 214 (334)
T PRK13771 157 RAGVKKGETVLVTGAGGGVGIHAIQVAKALGA-KVIAVTSSESKAKIVSKY-ADYVIVGS 214 (334)
T ss_pred hcCCCCCCEEEEECCCccHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHH-HHHhcCch
Confidence 66889999999998 59999999999999999 788888899999999888 77766543
No 62
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=99.97 E-value=5.4e-29 Score=217.51 Aligned_cols=226 Identities=32% Similarity=0.528 Sum_probs=187.5
Q ss_pred ceEEEEecCC-CeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCCCC
Q 025712 15 NMAAWLLGIK-TLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLE 93 (249)
Q Consensus 15 ~~~~~~~~~~-~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~ 93 (249)
||+.+++.++ .+++.+.+.|.|.++|++|||.++++|+.|+..+.+..........|.++|+|++|+|+.+|++++.++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~V~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~~G~~v~~~~ 80 (341)
T cd05281 1 MKAIVKTKAGPGAELVEVPVPKPGPGEVLIKVLAASICGTDVHIYEWDEWAQSRIKPPLIFGHEFAGEVVEVGEGVTRVK 80 (341)
T ss_pred CcceEEecCCCceEEEeCCCCCCCCCeEEEEEEEEEEcccchHHHcCCCCccccCCCCcccccceEEEEEEECCCCCCCC
Confidence 4677777665 599999999999999999999999999999887543211111134577899999999999999999999
Q ss_pred CCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhccccchHHHHHHHHH
Q 025712 94 VGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRR 173 (249)
Q Consensus 94 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~a~~~l~~ 173 (249)
+||+|++++...|+.|.+|..+...+|....+.+. ...|+|++|+.++.+.++++|++++++.+++...+.++++++.
T Consensus 81 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~v~v~~~~~~~lP~~~~~~~a~~~~~~~~a~~~~~- 158 (341)
T cd05281 81 VGDYVSAETHIVCGKCYQCRTGNYHVCQNTKILGV-DTDGCFAEYVVVPEENLWKNDKDIPPEIASIQEPLGNAVHTVL- 158 (341)
T ss_pred CCCEEEECCccCCCCChHHHCcCcccCcccceEec-cCCCcceEEEEechHHcEECcCCCCHHHhhhhhHHHHHHHHHH-
Confidence 99999999888999999999999999976544442 3579999999999999999999999877766667778887765
Q ss_pred cCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCCCcccHHHHHHHHH
Q 025712 174 ANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGRYKMQWV 245 (249)
Q Consensus 174 ~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~ 245 (249)
....+|++++|+|+|++|++++|+++.+|...+++++++++|.++++++|++++++++. .++. .+.+++
T Consensus 159 ~~~~~g~~vlV~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~-~~~~~~ 227 (341)
T cd05281 159 AGDVSGKSVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYRLELAKKMGADVVINPRE--EDVV-EVKSVT 227 (341)
T ss_pred hcCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCcceeeCccc--ccHH-HHHHHc
Confidence 34578999999988999999999999999866888888999999999999999987664 5565 555543
No 63
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=99.97 E-value=9.5e-29 Score=215.72 Aligned_cols=225 Identities=29% Similarity=0.471 Sum_probs=194.0
Q ss_pred ceEEEEecCC--CeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCCC
Q 025712 15 NMAAWLLGIK--TLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSL 92 (249)
Q Consensus 15 ~~~~~~~~~~--~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~ 92 (249)
|+++++..++ .+++++.+.|.+.++|++||+.++++|+.|...+.+.+... ...|.++|+|++|+|+++|++++.+
T Consensus 1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~--~~~~~~~g~e~~G~V~~vG~~~~~~ 78 (341)
T cd08297 1 MKAAVVEEFGEKPYEVKDVPVPEPGPGEVLVKLEASGVCHTDLHAALGDWPVK--PKLPLIGGHEGAGVVVAVGPGVSGL 78 (341)
T ss_pred CceEEeeccCCCCceEEEeeCCCCCCCeEEEEEEEeecchhHHHHHcCCCCcC--CCCCccCCcccceEEEEeCCCCCCC
Confidence 5788888766 89999999999999999999999999999998877654211 3457789999999999999999999
Q ss_pred CCCCeEEEccC-cCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhcccc-chHHHHHH
Q 025712 93 EVGDRVALEPG-ISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHA 170 (249)
Q Consensus 93 ~~Gd~V~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-~~~~a~~~ 170 (249)
++||+|++.+. ..|++|.+|..++..+|......+. ...|+|++|+.++.+.++++|+++++.+++.+. ...+||.+
T Consensus 79 ~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~s~~~~~~~~~~~lp~~~~~~~~a~l~~~~~ta~~~ 157 (341)
T cd08297 79 KVGDRVGVKWLYDACGKCEYCRTGDETLCPNQKNSGY-TVDGTFAEYAIADARYVTPIPDGLSFEQAAPLLCAGVTVYKA 157 (341)
T ss_pred CCCCEEEEecCCCCCCCCccccCCCcccCCCcccccc-ccCCcceeEEEeccccEEECCCCCCHHHHHHHHcchHHHHHH
Confidence 99999998764 6799999999999999977554433 346899999999999999999999998888555 67789998
Q ss_pred HHHcCCCCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCCCcccHHHHHHHHH
Q 025712 171 CRRANVGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGRYKMQWV 245 (249)
Q Consensus 171 l~~~~~~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~ 245 (249)
+...++++++++||+| ++++|++++++|++.|+ .++++.+++++.+.++++|++++++++. .++.+++.+++
T Consensus 158 ~~~~~~~~~~~vlV~g~~~~vg~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~v~~~~~--~~~~~~~~~~~ 230 (341)
T cd08297 158 LKKAGLKPGDWVVISGAGGGLGHLGVQYAKAMGL-RVIAIDVGDEKLELAKELGADAFVDFKK--SDDVEAVKELT 230 (341)
T ss_pred HHhcCCCCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHcCCcEEEcCCC--ccHHHHHHHHh
Confidence 8777899999999998 56799999999999999 7899989999999999999999998775 57877777765
No 64
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=99.97 E-value=1.2e-28 Score=215.42 Aligned_cols=225 Identities=33% Similarity=0.491 Sum_probs=190.7
Q ss_pred ceEEEEecCC-CeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCCCC
Q 025712 15 NMAAWLLGIK-TLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLE 93 (249)
Q Consensus 15 ~~~~~~~~~~-~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~ 93 (249)
||++++..++ .+++++.+.|.+.+++|+||+.++++|+.|+....+.+. ....|.++|+|++|.|+.+|++++.++
T Consensus 1 m~a~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~---~~~~~~~~g~e~~G~V~~~G~~~~~~~ 77 (345)
T cd08260 1 MRAAVYEEFGEPLEIREVPDPEPPPDGVVVEVEACGVCRSDWHGWQGHDP---DVTLPHVPGHEFAGVVVEVGEDVSRWR 77 (345)
T ss_pred CeeEEEecCCCCcEEEEccCCCCCCCeEEEEEEEeeccHHHHHHhcCCCC---CCCCCeeeccceeEEEEEECCCCccCC
Confidence 5777777654 599999999999999999999999999999988777542 135688999999999999999999999
Q ss_pred CCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCC--ceEECCCCCChhhhcccc-chHHHHHH
Q 025712 94 VGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAK--LCYKLPDNVSLEEGAMCE-PLSVGVHA 170 (249)
Q Consensus 94 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~ip~~~~~~~aa~~~-~~~~a~~~ 170 (249)
+||+|++.+...|++|.+|..+...+|.+.. ..+....|+|++|+.++.. .++++|+++++.+++.+. ...+||++
T Consensus 78 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~v~~~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~ 156 (345)
T cd08260 78 VGDRVTVPFVLGCGTCPYCRAGDSNVCEHQV-QPGFTHPGSFAEYVAVPRADVNLVRLPDDVDFVTAAGLGCRFATAFRA 156 (345)
T ss_pred CCCEEEECCCCCCCCCccccCcCcccCCCCc-ccccCCCCcceeEEEcccccCceEECCCCCCHHHhhhhccchHHHHHH
Confidence 9999998666789999999999999999752 2222347999999999974 899999999998888665 57889988
Q ss_pred H-HHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCCCcccHHHHHHHHH
Q 025712 171 C-RRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGRYKMQWV 245 (249)
Q Consensus 171 l-~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~ 245 (249)
+ +..++.++++++|+|+|++|++++++++..|+ .++++++++++.+.++++|++++++++. ..++.+.+.+++
T Consensus 157 l~~~~~~~~~~~vlV~g~g~vg~~~~~~a~~~G~-~vi~~~~~~~~~~~~~~~g~~~~i~~~~-~~~~~~~~~~~~ 230 (345)
T cd08260 157 LVHQARVKPGEWVAVHGCGGVGLSAVMIASALGA-RVIAVDIDDDKLELARELGAVATVNASE-VEDVAAAVRDLT 230 (345)
T ss_pred HHHccCCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHhCCCEEEcccc-chhHHHHHHHHh
Confidence 7 56788999999999999999999999999999 7889989999999999999999998764 245666665543
No 65
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=99.97 E-value=2.7e-29 Score=217.93 Aligned_cols=199 Identities=22% Similarity=0.286 Sum_probs=165.9
Q ss_pred ceEEEEecCC------CeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCC
Q 025712 15 NMAAWLLGIK------TLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSE 88 (249)
Q Consensus 15 ~~~~~~~~~~------~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~ 88 (249)
||++++.+++ .++++++|.|.|+++||+||+.++++|++|+..+.+.+.. ....|.++|||++|+|+++|++
T Consensus 1 m~a~~~~~~~~~~~~~~~~~~~~~~p~~~~~evlv~v~~~gi~~~d~~~~~g~~~~--~~~~p~v~G~e~~G~V~~vG~~ 78 (324)
T cd08291 1 MKALLLEEYGKPLEVKELSLPEPEVPEPGPGEVLIKVEAAPINPSDLGFLKGQYGS--TKALPVPPGFEGSGTVVAAGGG 78 (324)
T ss_pred CeEEEEeecCCCccccEEEecccCCCCCCCCeEEEEEEEccCCHHHHHHhcCcCCC--CCCCCcCCCcceEEEEEEECCC
Confidence 5677777654 5888999999999999999999999999999988775421 1356889999999999999999
Q ss_pred CCC-CCCCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhcccc-chHH
Q 025712 89 VKS-LEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSV 166 (249)
Q Consensus 89 v~~-~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-~~~~ 166 (249)
+++ |++||+|+..+. .+|+|++|+.++.+.++++|+++++.+++.+. ...+
T Consensus 79 v~~~~~vGd~V~~~~~---------------------------~~g~~a~~~~v~~~~~~~iP~~~~~~~aa~~~~~~~t 131 (324)
T cd08291 79 PLAQSLIGKRVAFLAG---------------------------SYGTYAEYAVADAQQCLPLPDGVSFEQGASSFVNPLT 131 (324)
T ss_pred ccccCCCCCEEEecCC---------------------------CCCcchheeeecHHHeEECCCCCCHHHHhhhcccHHH
Confidence 996 999999986521 14999999999999999999999999888544 4557
Q ss_pred HHHHHHHcCCCCCCeEEEE--cCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCCCcccHHHHHHHH
Q 025712 167 GVHACRRANVGPETNVMIM--GSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGRYKMQW 244 (249)
Q Consensus 167 a~~~l~~~~~~~g~~vlI~--G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~ 244 (249)
||.+++.... +++.++|+ |+|++|++++|+|+.+|+ .++++++++++.++++++|++++++++. +++.+.++++
T Consensus 132 a~~~~~~~~~-~~~~vlv~~~g~g~vG~~a~q~a~~~G~-~vi~~~~~~~~~~~~~~~g~~~~i~~~~--~~~~~~v~~~ 207 (324)
T cd08291 132 ALGMLETARE-EGAKAVVHTAAASALGRMLVRLCKADGI-KVINIVRRKEQVDLLKKIGAEYVLNSSD--PDFLEDLKEL 207 (324)
T ss_pred HHHHHHhhcc-CCCcEEEEccCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCcEEEECCC--ccHHHHHHHH
Confidence 7766655554 56666665 589999999999999999 7899999999999999999999998776 6888888876
Q ss_pred HH
Q 025712 245 VQ 246 (249)
Q Consensus 245 ~~ 246 (249)
+.
T Consensus 208 ~~ 209 (324)
T cd08291 208 IA 209 (324)
T ss_pred hC
Confidence 54
No 66
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=99.97 E-value=5.6e-29 Score=217.17 Aligned_cols=212 Identities=30% Similarity=0.469 Sum_probs=183.2
Q ss_pred EEEEecC-CCeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCCCCCC
Q 025712 17 AAWLLGI-KTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVG 95 (249)
Q Consensus 17 ~~~~~~~-~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~G 95 (249)
++.++.+ ..|++++.+.|++.++||+||+.++++|+.|...+.+.+. ....|.++|||++|+|+++|++++.+++|
T Consensus 2 ~~~~~~~~~~~~~~~~~~p~~~~~evlirv~a~~i~~~d~~~~~g~~~---~~~~p~~~g~e~~G~V~~vG~~v~~~~~G 78 (337)
T cd05283 2 GYAARDASGKLEPFTFERRPLGPDDVDIKITYCGVCHSDLHTLRNEWG---PTKYPLVPGHEIVGIVVAVGSKVTKFKVG 78 (337)
T ss_pred ceEEecCCCCceEEeccCCCCCCCeEEEEEEEecccchHHHHhcCCcC---CCCCCcccCcceeeEEEEECCCCcccCCC
Confidence 3445544 5899999999999999999999999999999998877541 23568899999999999999999999999
Q ss_pred CeEEEc-cCcCCCCCccccCCCCCCCcCccccC------CCCCCCceeEEEEecCCceEECCCCCChhhhcccc-chHHH
Q 025712 96 DRVALE-PGISCGHCSLCKAGSYNLCPEMRFFG------SPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVG 167 (249)
Q Consensus 96 d~V~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-~~~~a 167 (249)
|+|++. ....|++|.+|..+..++|....+.. +....|+|++|+.++.+.++++|+++++.+++.+. ...+|
T Consensus 79 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~lp~~~~~~~aa~l~~~~~ta 158 (337)
T cd05283 79 DRVGVGCQVDSCGTCEQCKSGEEQYCPKGVVTYNGKYPDGTITQGGYADHIVVDERFVFKIPEGLDSAAAAPLLCAGITV 158 (337)
T ss_pred CEEEEecCCCCCCCCccccCCchhcCcchhhcccccccCCCcCCCcceeEEEechhheEECCCCCCHHHhhhhhhHHHHH
Confidence 999843 44589999999999999998765442 12356999999999999999999999999888655 56788
Q ss_pred HHHHHHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCC
Q 025712 168 VHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVST 232 (249)
Q Consensus 168 ~~~l~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~ 232 (249)
|.+++...++++++++|.|.|++|++++++++.+|+ .++.+++++++.++++++|++++++...
T Consensus 159 ~~~~~~~~~~~g~~vlV~g~g~vG~~~~~~a~~~G~-~v~~~~~~~~~~~~~~~~g~~~vi~~~~ 222 (337)
T cd05283 159 YSPLKRNGVGPGKRVGVVGIGGLGHLAVKFAKALGA-EVTAFSRSPSKKEDALKLGADEFIATKD 222 (337)
T ss_pred HHHHHhcCCCCCCEEEEECCcHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHHcCCcEEecCcc
Confidence 988877778999999999899999999999999999 7899989999999999999999987654
No 67
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=99.97 E-value=4.9e-29 Score=217.73 Aligned_cols=221 Identities=32% Similarity=0.563 Sum_probs=185.7
Q ss_pred ecCC-CeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCCCCCCCeEE
Q 025712 21 LGIK-TLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVA 99 (249)
Q Consensus 21 ~~~~-~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~ 99 (249)
++|+ .+++++.|.|.|+++||+||+.++++|+.|...+.+.........+|.++|+|++|+|+++|++++.+++||+|+
T Consensus 5 ~~~~~~~~l~~~~~p~~~~~ev~V~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~ 84 (340)
T TIGR00692 5 TKPGYGAELTEVPVPEPGPGEVLIKVLATSICGTDVHIYNWDEWAQSRIKPPQVVGHEVAGEVVGIGPGVEGIKVGDYVS 84 (340)
T ss_pred ccCCCCcEEEECCCCCCCCCeEEEEEEEEEEcccCHHHHcCCCCCCCCCCCCcccccceEEEEEEECCCCCcCCCCCEEE
Confidence 3443 688999999999999999999999999999987654321111234577899999999999999999999999999
Q ss_pred EccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhccccchHHHHHHHHHcCCCCC
Q 025712 100 LEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANVGPE 179 (249)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~a~~~l~~~~~~~g 179 (249)
+.+.+.|+.|..|..+...+|....+.+ ....|+|++|+.++.+.++++|+++++..++....+.++++++ .....+|
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~lp~~~~~~~a~~~~~~~~a~~~~-~~~~~~g 162 (340)
T TIGR00692 85 VETHIVCGKCYACRRGQYHVCQNTKIFG-VDTDGCFAEYAVVPAQNIWKNPKSIPPEYATIQEPLGNAVHTV-LAGPISG 162 (340)
T ss_pred ECCcCCCCCChhhhCcChhhCcCcceEe-ecCCCcceeEEEeehHHcEECcCCCChHhhhhcchHHHHHHHH-HccCCCC
Confidence 9999999999999999999999865543 2257999999999999999999999987776666777887765 3456789
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCCCcccHHHHHHHHH
Q 025712 180 TNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGRYKMQWV 245 (249)
Q Consensus 180 ~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~ 245 (249)
++++|.|+|++|++++|+++.+|++.++++++++++.++++++|+++++++.. .++.+.+.+++
T Consensus 163 ~~vlI~~~g~vg~~a~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~--~~~~~~l~~~~ 226 (340)
T TIGR00692 163 KSVLVTGAGPIGLMAIAVAKASGAYPVIVSDPNEYRLELAKKMGATYVVNPFK--EDVVKEVADLT 226 (340)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCcEEEcccc--cCHHHHHHHhc
Confidence 99999888999999999999999955888888999999999999999988765 67777776654
No 68
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=99.97 E-value=7.4e-29 Score=215.63 Aligned_cols=213 Identities=39% Similarity=0.715 Sum_probs=189.2
Q ss_pred ceEEEEecCCCeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCCCCC
Q 025712 15 NMAAWLLGIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEV 94 (249)
Q Consensus 15 ~~~~~~~~~~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~ 94 (249)
|+++++.+++.+++.+.+.|+++++||+||+.++++|+.|.....+.+. ..+|.++|+|++|+|+.+|++++.+++
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~l~~~~v~v~v~~~~l~~~d~~~~~g~~~----~~~p~~~g~~~~G~v~~vG~~v~~~~~ 76 (334)
T cd08234 1 MKALVYEGPGELEVEEVPVPEPGPDEVLIKVAACGICGTDLHIYEGEFG----AAPPLVPGHEFAGVVVAVGSKVTGFKV 76 (334)
T ss_pred CeeEEecCCCceEEEeccCCCCCCCeEEEEEEEEeEchhhhHHhcCCCC----CCCCcccccceEEEEEEeCCCCCCCCC
Confidence 5788898888999999999999999999999999999999988776542 236789999999999999999999999
Q ss_pred CCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhccccchHHHHHHHHHc
Q 025712 95 GDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRA 174 (249)
Q Consensus 95 Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~a~~~l~~~ 174 (249)
||+|++.+...|+.|.+|..+...+|...+..+. ...|+|++|+.++.+.++++|+++++.+++....+.+++++++..
T Consensus 77 Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~v~~~~~~~lP~~~~~~~aa~~~~~~~a~~~l~~~ 155 (334)
T cd08234 77 GDRVAVDPNIYCGECFYCRRGRPNLCENLTAVGV-TRNGGFAEYVVVPAKQVYKIPDNLSFEEAALAEPLSCAVHGLDLL 155 (334)
T ss_pred CCEEEEcCCcCCCCCccccCcChhhCCCcceecc-CCCCcceeEEEecHHHcEECcCCCCHHHHhhhhHHHHHHHHHHhc
Confidence 9999998888899999999999999988765432 256999999999999999999999999888666677888888778
Q ss_pred CCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCC
Q 025712 175 NVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVST 232 (249)
Q Consensus 175 ~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~ 232 (249)
++.++++++|+|+|.+|.+++++|+..|++.++++++++++.++++++|++++++++.
T Consensus 156 ~~~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~ 213 (334)
T cd08234 156 GIKPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKLGATETVDPSR 213 (334)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCeEEecCCC
Confidence 8999999999998999999999999999955888889999999999999998888765
No 69
>KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion]
Probab=99.97 E-value=1.4e-29 Score=207.66 Aligned_cols=186 Identities=23% Similarity=0.272 Sum_probs=160.3
Q ss_pred ccceEEEEecC----CCeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCC
Q 025712 13 NQNMAAWLLGI----KTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSE 88 (249)
Q Consensus 13 ~~~~~~~~~~~----~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~ 88 (249)
...++++|... +.++++..+.|....++|+||..|++|||+|+..++|.|... +++|.+-|+|++|+|+.+|++
T Consensus 18 ~~~kalvY~~hgdP~kVlql~~~~~p~~~~s~v~Vk~LAaPINPsDIN~IQGvYpvr--P~~PAVgGnEGv~eVv~vGs~ 95 (354)
T KOG0025|consen 18 ARSKALVYSEHGDPAKVLQLKNLELPAVPGSDVLVKMLAAPINPSDINQIQGVYPVR--PELPAVGGNEGVGEVVAVGSN 95 (354)
T ss_pred cccceeeecccCCchhhheeecccCCCCCCCceeeeeeecCCChHHhhhhccccCCC--CCCCcccCCcceEEEEEecCC
Confidence 44577777743 468999999998888889999999999999999999987443 577899999999999999999
Q ss_pred CCCCCCCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhccccc-hHHH
Q 025712 89 VKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEP-LSVG 167 (249)
Q Consensus 89 v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~-~~~a 167 (249)
+++|++||+|+... ...|+|+++...+++.+++++..++++.||.+.. -+||
T Consensus 96 vkgfk~Gd~VIp~~---------------------------a~lGtW~t~~v~~e~~Li~vd~~~pl~~AAT~~VNP~TA 148 (354)
T KOG0025|consen 96 VKGFKPGDWVIPLS---------------------------ANLGTWRTEAVFSESDLIKVDKDIPLASAATLSVNPCTA 148 (354)
T ss_pred cCccCCCCeEeecC---------------------------CCCccceeeEeecccceEEcCCcCChhhhheeccCchHH
Confidence 99999999999763 3679999999999999999999999999998886 5589
Q ss_pred HHHH-HHcCCCCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH----HHcCCCEEe
Q 025712 168 VHAC-RRANVGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA----RNLGADETA 228 (249)
Q Consensus 168 ~~~l-~~~~~~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~----~~~ga~~vi 228 (249)
|+++ +..++.+|++|+-.| .++||++.+|+||+.|+ +.|.+.++...++.+ +.+||++||
T Consensus 149 yrmL~dfv~L~~GD~vIQNganS~VG~~ViQlaka~Gi-ktinvVRdR~~ieel~~~Lk~lGA~~Vi 214 (354)
T KOG0025|consen 149 YRMLKDFVQLNKGDSVIQNGANSGVGQAVIQLAKALGI-KTINVVRDRPNIEELKKQLKSLGATEVI 214 (354)
T ss_pred HHHHHHHHhcCCCCeeeecCcccHHHHHHHHHHHHhCc-ceEEEeecCccHHHHHHHHHHcCCceEe
Confidence 9999 558999999988887 69999999999999999 455555666555554 568999998
No 70
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=99.97 E-value=5.4e-29 Score=217.61 Aligned_cols=191 Identities=15% Similarity=0.155 Sum_probs=154.6
Q ss_pred CCCeEEEEecCCCC-CCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCCCCCCCeEEEc
Q 025712 23 IKTLKIQPYHLPTL-GPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALE 101 (249)
Q Consensus 23 ~~~l~~~~~~~p~~-~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~ 101 (249)
++.++++|.|.|.| +++||||||+|++||+.|...............+|.++|+|++|+|+++|+++++|++||+|+..
T Consensus 20 ~~~~~~~~~~~p~~~~~~evlV~v~a~gin~~d~~~~~~~~~~~~~~~~~~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~ 99 (345)
T cd08293 20 AENFRVEECTLPDELNEGQVLVRTLYLSVDPYMRCRMNEDTGTDYLAPWQLSQVLDGGGVGVVEESKHQKFAVGDIVTSF 99 (345)
T ss_pred ccceEEEeccCCCCCCCCeEEEEEEEEecCHHHHhhcccccccccCCCccCCCceEeeEEEEEeccCCCCCCCCCEEEec
Confidence 45799999999987 49999999999999999864332111001123567899999999999999999999999999753
Q ss_pred cCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChh-----hhccccchHHHHHHH-HHcC
Q 025712 102 PGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLE-----EGAMCEPLSVGVHAC-RRAN 175 (249)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~-----~aa~~~~~~~a~~~l-~~~~ 175 (249)
.++|+||+.++.+.++++|+++++. .+++..++.+||+++ +.++
T Consensus 100 ------------------------------~~~~ae~~~v~~~~~~~iP~~~~~~~~~~~~a~~~~~~~ta~~al~~~~~ 149 (345)
T cd08293 100 ------------------------------NWPWQTYAVLDGSSLEKVDPQLVDGHLSYFLGAVGLPGLTALIGIQEKGH 149 (345)
T ss_pred ------------------------------CCCceeEEEecHHHeEEcCccccccchhHHhhhcCcHHHHHHHHHHHhcc
Confidence 1579999999999999999985432 233444678999888 4567
Q ss_pred CCCC--CeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHH-cCCCEEecCCCCcccHHHHHHHHH
Q 025712 176 VGPE--TNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN-LGADETAKVSTDIEMWGRYKMQWV 245 (249)
Q Consensus 176 ~~~g--~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~-~ga~~vi~~~~~~~~~~~~~~~~~ 245 (249)
+++| ++|||+| +|++|++++|+|+++|+.+|+++++++++.+++++ +|+++++++++ +++.+.+++++
T Consensus 150 ~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~lGa~~vi~~~~--~~~~~~i~~~~ 221 (345)
T cd08293 150 ITPGANQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSELGFDAAINYKT--DNVAERLRELC 221 (345)
T ss_pred CCCCCCCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhcCCcEEEECCC--CCHHHHHHHHC
Confidence 7776 9999998 59999999999999998668999899999999876 99999998776 67887777654
No 71
>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.
Probab=99.97 E-value=1.5e-28 Score=213.04 Aligned_cols=212 Identities=37% Similarity=0.581 Sum_probs=184.4
Q ss_pred ceEEEEec-CCCeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCCCC
Q 025712 15 NMAAWLLG-IKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLE 93 (249)
Q Consensus 15 ~~~~~~~~-~~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~ 93 (249)
|+++++.. ++.+.+++.|.|.+.++||+|+++++++|+.|+....+... ....|.++|+|++|+|+++|++++.++
T Consensus 1 m~a~~~~~~~~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~---~~~~~~~~g~e~~G~v~~~G~~v~~~~ 77 (332)
T cd08259 1 MKAAILHKPNKPLQIEEVPDPEPGPGEVLIKVKAAGVCYRDLLFWKGFFP---RGKYPLILGHEIVGTVEEVGEGVERFK 77 (332)
T ss_pred CeEEEEecCCCceEEEEccCCCCCCCeEEEEEEEEecchhhhHHhcCCCC---CCCCCeeccccceEEEEEECCCCccCC
Confidence 46777765 57899999999999999999999999999999988776432 134578999999999999999999999
Q ss_pred CCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhcccc-chHHHHHHHH
Q 025712 94 VGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHACR 172 (249)
Q Consensus 94 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-~~~~a~~~l~ 172 (249)
+||+|++++...|++|.+|+.+.+.+|.+....+ ....|+|++|+.++...++++|+++++++++.+. .+.+||+++.
T Consensus 78 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~v~~~~~~~ip~~~~~~~~~~~~~~~~ta~~~l~ 156 (332)
T cd08259 78 PGDRVILYYYIPCGKCEYCLSGEENLCRNRAEYG-EEVDGGFAEYVKVPERSLVKLPDNVSDESAALAACVVGTAVHALK 156 (332)
T ss_pred CCCEEEECCCCCCcCChhhhCCCcccCCCccccc-cccCCeeeeEEEechhheEECCCCCCHHHHhhhccHHHHHHHHHH
Confidence 9999999988899999999999999998753333 3457999999999999999999999998888665 6778998886
Q ss_pred HcCCCCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCC
Q 025712 173 RANVGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVS 231 (249)
Q Consensus 173 ~~~~~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~ 231 (249)
...+.++++++|+| +|++|++++++++..|+ .++++.+++++.+.++++|++++++.+
T Consensus 157 ~~~~~~~~~vlI~ga~g~vG~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (332)
T cd08259 157 RAGVKKGDTVLVTGAGGGVGIHAIQLAKALGA-RVIAVTRSPEKLKILKELGADYVIDGS 215 (332)
T ss_pred HhCCCCCCEEEEECCCCHHHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHcCCcEEEecH
Confidence 68889999999998 69999999999999999 688888888999999999988877543
No 72
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=99.97 E-value=1.5e-28 Score=216.91 Aligned_cols=225 Identities=32% Similarity=0.483 Sum_probs=192.5
Q ss_pred ceEEEEecC-CCeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCC--
Q 025712 15 NMAAWLLGI-KTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKS-- 91 (249)
Q Consensus 15 ~~~~~~~~~-~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~-- 91 (249)
|+++++..+ ..+++++.|.|.++++||+||+.++++|+.|+....+.+ +..+|.++|+|++|+|+.+|+++.+
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~l~~~d~~~~~~~~----~~~~p~~~g~e~~G~v~~vG~~~~~~~ 76 (367)
T cd08263 1 MKAAVLKGPNPPLTIEEIPVPRPKEGEILIRVAACGVCHSDLHVLKGEL----PFPPPFVLGHEISGEVVEVGPNVENPY 76 (367)
T ss_pred CeeEEEecCCCCcEEEEeeCCCCCCCeEEEEEEEeeeCcchHHHhcCCC----CCCCCcccccccceEEEEeCCCCCCCC
Confidence 467777766 458899999999999999999999999999998877643 2356789999999999999999988
Q ss_pred -CCCCCeEEEccCcCCCCCccccCCCCCCCcCccccCC---------------------CCCCCceeEEEEecCCceEEC
Q 025712 92 -LEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGS---------------------PPTNGSLAHKVVHPAKLCYKL 149 (249)
Q Consensus 92 -~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~g~~~~~~~~~~~~~~~i 149 (249)
+++||+|++.+...|++|.+|..+...+|.....+.. ....|+|++|+.++.+.++++
T Consensus 77 ~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 156 (367)
T cd08263 77 GLSVGDRVVGSFIMPCGKCRYCARGKENLCEDFFAYNRLKGTLYDGTTRLFRLDGGPVYMYSMGGLAEYAVVPATALAPL 156 (367)
T ss_pred cCCCCCEEEEcCCCCCCCChHHhCcCcccCcCccccccccccccCCcccccccCCCccccccCCcceeEEEechhhEEEC
Confidence 9999999998888999999999999999987542100 013589999999999999999
Q ss_pred CCCCChhhhcccc-chHHHHHHHHH-cCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEE
Q 025712 150 PDNVSLEEGAMCE-PLSVGVHACRR-ANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADET 227 (249)
Q Consensus 150 p~~~~~~~aa~~~-~~~~a~~~l~~-~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~v 227 (249)
|+++++.+++.+. .+.+||.++.. ..+.++++++|+|+|++|++++++|+..|+..++++++++++.+.++++|++.+
T Consensus 157 P~~is~~~aa~l~~~~~tA~~~l~~~~~~~~g~~VlI~g~g~vG~~~~~lak~~G~~~vi~~~~s~~~~~~~~~~g~~~v 236 (367)
T cd08263 157 PESLDYTESAVLGCAGFTAYGALKHAADVRPGETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVRDEKLAKAKELGATHT 236 (367)
T ss_pred CCCCCHHHHhHhcchHHHHHHHHHhcccCCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHhCCceE
Confidence 9999999988766 57899988844 667899999999999999999999999999558888889999999999999999
Q ss_pred ecCCCCcccHHHHHHHHH
Q 025712 228 AKVSTDIEMWGRYKMQWV 245 (249)
Q Consensus 228 i~~~~~~~~~~~~~~~~~ 245 (249)
++++. .++.+++++++
T Consensus 237 ~~~~~--~~~~~~l~~~~ 252 (367)
T cd08263 237 VNAAK--EDAVAAIREIT 252 (367)
T ss_pred ecCCc--ccHHHHHHHHh
Confidence 98775 67777777654
No 73
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=99.97 E-value=2.4e-28 Score=212.14 Aligned_cols=213 Identities=30% Similarity=0.483 Sum_probs=185.3
Q ss_pred ceEEEEecCC-----CeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCC
Q 025712 15 NMAAWLLGIK-----TLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEV 89 (249)
Q Consensus 15 ~~~~~~~~~~-----~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v 89 (249)
|+++++.+++ .+++++.+.|.+.++||+||+.++++|++|+....+.+.. ...|.++|+|++|+|+.+|+++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~irv~~~~i~~~d~~~~~g~~~~---~~~~~~~g~e~~G~V~~vG~~v 77 (329)
T cd08298 1 MKAMVLEKPGPIEENPLRLTEVPVPEPGPGEVLIKVEACGVCRTDLHIVEGDLPP---PKLPLIPGHEIVGRVEAVGPGV 77 (329)
T ss_pred CeEEEEecCCCCCCCCceEEeccCCCCCCCEEEEEEEEEeccHHHHHHHhCCCCC---CCCCccccccccEEEEEECCCC
Confidence 4667777666 6888898888899999999999999999999887764321 3457899999999999999999
Q ss_pred CCCCCCCeEEEccC-cCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhcccc-chHHH
Q 025712 90 KSLEVGDRVALEPG-ISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVG 167 (249)
Q Consensus 90 ~~~~~Gd~V~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-~~~~a 167 (249)
.++++||+|++.+. ..|+.|.+|+.+.+++|+.....+. ...|+|++|+.++.+.++++|+++++.+++.+. .+.+|
T Consensus 78 ~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~ta 156 (329)
T cd08298 78 TRFSVGDRVGVPWLGSTCGECRYCRSGRENLCDNARFTGY-TVDGGYAEYMVADERFAYPIPEDYDDEEAAPLLCAGIIG 156 (329)
T ss_pred CCCcCCCEEEEeccCCCCCCChhHhCcChhhCCCcccccc-ccCCceEEEEEecchhEEECCCCCCHHHhhHhhhhhHHH
Confidence 99999999987544 6899999999999999998776654 346999999999999999999999998888555 67889
Q ss_pred HHHHHHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCC
Q 025712 168 VHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVST 232 (249)
Q Consensus 168 ~~~l~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~ 232 (249)
|++++.++++++++++|+|+|++|++++++++..|+ +++++++++++.+.++++|++++++.+.
T Consensus 157 ~~~~~~~~~~~~~~vlV~g~g~vg~~~~~la~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~ 220 (329)
T cd08298 157 YRALKLAGLKPGQRLGLYGFGASAHLALQIARYQGA-EVFAFTRSGEHQELARELGADWAGDSDD 220 (329)
T ss_pred HHHHHhhCCCCCCEEEEECCcHHHHHHHHHHHHCCC-eEEEEcCChHHHHHHHHhCCcEEeccCc
Confidence 998877899999999999999999999999999999 7888888999999999999988887653
No 74
>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family. This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous
Probab=99.97 E-value=4e-28 Score=209.23 Aligned_cols=223 Identities=37% Similarity=0.668 Sum_probs=186.5
Q ss_pred ceEEEEecC--CCeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCCC
Q 025712 15 NMAAWLLGI--KTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSL 92 (249)
Q Consensus 15 ~~~~~~~~~--~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~ 92 (249)
|++++..++ ..+++++++.|++.+++|+|||.++++|+.|+....+.+. ....|.++|+|++|+|+.+|++++.+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~V~v~~~~l~~~d~~~~~g~~~---~~~~p~~~G~e~~G~V~~vG~~v~~~ 77 (306)
T cd08258 1 MKALVKTGPGPGNVELREVPEPEPGPGEVLIKVAAAGICGSDLHIYKGDYD---PVETPVVLGHEFSGTIVEVGPDVEGW 77 (306)
T ss_pred CeeEEEecCCCCceEEeecCCCCCCCCeEEEEEEEEEechhhHHHHcCCCC---cCCCCeeeccceEEEEEEECCCcCcC
Confidence 356666643 4699999999999999999999999999999987776531 23457899999999999999999999
Q ss_pred CCCCeEEEccC-cCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhccccchHHHHHHH
Q 025712 93 EVGDRVALEPG-ISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHAC 171 (249)
Q Consensus 93 ~~Gd~V~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~a~~~l 171 (249)
++||+|++.+. ..|+.|.+|..+...+|......+ ....|+|++|+.++.+.++++|+++++.++++...+.++|+++
T Consensus 78 ~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~v~~~~~~~lp~~~~~~~aa~~~~~~~a~~~l 156 (306)
T cd08258 78 KVGDRVVSETTFSTCGRCPYCRRGDYNLCPHRKGIG-TQADGGFAEYVLVPEESLHELPENLSLEAAALTEPLAVAVHAV 156 (306)
T ss_pred CCCCEEEEccCcCCCCCCcchhCcCcccCCCCceee-ecCCCceEEEEEcchHHeEECcCCCCHHHHHhhchHHHHHHHH
Confidence 99999998774 689999999999999998753332 2356999999999999999999999999888666778888887
Q ss_pred -HHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEE--eCChhHHHHHHHcCCCEEecCCCCcccHHHHHHHHH
Q 025712 172 -RRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIIT--DVDVQRLSIARNLGADETAKVSTDIEMWGRYKMQWV 245 (249)
Q Consensus 172 -~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~--~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~ 245 (249)
...+++++++++|.|+|++|++++++|+.+|+ +++.+ .+++++.++++++|++++ ++.. +++.+.+.+++
T Consensus 157 ~~~~~~~~g~~vlI~g~g~~g~~~~~la~~~G~-~v~~~~~~~~~~~~~~~~~~g~~~~-~~~~--~~~~~~l~~~~ 229 (306)
T cd08258 157 AERSGIRPGDTVVVFGPGPIGLLAAQVAKLQGA-TVVVVGTEKDEVRLDVAKELGADAV-NGGE--EDLAELVNEIT 229 (306)
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEECCCCCHHHHHHHHHhCCccc-CCCc--CCHHHHHHHHc
Confidence 55788999999998889999999999999999 56665 345668889999999888 7654 67777776654
No 75
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=99.96 E-value=1.1e-28 Score=210.17 Aligned_cols=159 Identities=28% Similarity=0.458 Sum_probs=142.2
Q ss_pred eeccceEEEEEEecCCCC------CCCCCCeEEEccCcCCCCCccccCCCCCCCcCccccCCC------CCCCceeEEEE
Q 025712 73 VIGHECAGIIEEVGSEVK------SLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSP------PTNGSLAHKVV 140 (249)
Q Consensus 73 ~~G~e~~G~V~~vG~~v~------~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~g~~~~~~~ 140 (249)
++|||++|+|+++|++|+ ++++||||++.+...|++|.+|+.+++++|......+.. ..+|+|+||+.
T Consensus 1 v~GHE~~G~V~~vG~~v~~~~~~~~~~~GdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~g~~~~~~~~~~~G~~aey~~ 80 (280)
T TIGR03366 1 VLGHEIVGEVVALRGGFTPADDGVPLRLGQRVVWSVTVPCGRCFRCRRGLPQKCDSLRKYGHEALDSGWPLSGGYAEHCH 80 (280)
T ss_pred CCCcccceEEEEeCCCccccccCCCCCCCCEEEEcCCCCCCCChhhhCcCcccCCChhhcCcccccCCccccccceeeEE
Confidence 589999999999999999 899999999998899999999999999999986655421 24699999999
Q ss_pred ecCC-ceEECCCCCChhhhcccc-chHHHHHHHHHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHH
Q 025712 141 HPAK-LCYKLPDNVSLEEGAMCE-PLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSI 218 (249)
Q Consensus 141 ~~~~-~~~~ip~~~~~~~aa~~~-~~~~a~~~l~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~ 218 (249)
++.. .++++|+++++++++.+. ...++|+++++....++++|||+|+|++|++++|+|+++|+++|++++.+++|+++
T Consensus 81 v~~~~~~~~lP~~~~~~~aa~l~~~~~ta~~al~~~~~~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~ 160 (280)
T TIGR03366 81 LPAGTAIVPVPDDLPDAVAAPAGCATATVMAALEAAGDLKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRREL 160 (280)
T ss_pred ecCCCcEEECCCCCCHHHhhHhhhHHHHHHHHHHhccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHH
Confidence 9997 699999999999888766 46788888877777799999999999999999999999999668888889999999
Q ss_pred HHHcCCCEEecCC
Q 025712 219 ARNLGADETAKVS 231 (249)
Q Consensus 219 ~~~~ga~~vi~~~ 231 (249)
++++|++++++++
T Consensus 161 a~~~Ga~~~i~~~ 173 (280)
T TIGR03366 161 ALSFGATALAEPE 173 (280)
T ss_pred HHHcCCcEecCch
Confidence 9999999998764
No 76
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=99.96 E-value=6e-28 Score=208.83 Aligned_cols=199 Identities=25% Similarity=0.267 Sum_probs=170.3
Q ss_pred ceEEEEecCC----CeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCC
Q 025712 15 NMAAWLLGIK----TLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVK 90 (249)
Q Consensus 15 ~~~~~~~~~~----~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~ 90 (249)
|+++++.+++ .++++++|.|.+.++||+|||.++++|+.|+..+.+.+.. ....|.++|+|++|+|+++|++++
T Consensus 1 m~a~~~~~~~~~~~~~~~~~~~~p~~~~~~v~i~v~~~~~~~~d~~~~~g~~~~--~~~~p~~~G~e~~G~V~~~G~~v~ 78 (324)
T cd08292 1 MRAAVHTQFGDPADVLEIGEVPKPTPGAGEVLVRTTLSPIHNHDLWTIRGTYGY--KPELPAIGGSEAVGVVDAVGEGVK 78 (324)
T ss_pred CeeEEEccCCChhHeEEEeecCCCCCCCCeEEEEEEEccCCHHHHHHhcCcCCC--CCCCCCCCCcceEEEEEEeCCCCC
Confidence 4677776654 4889999999999999999999999999999888765421 134578999999999999999999
Q ss_pred CCCCCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhcccc-chHHHHH
Q 025712 91 SLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVH 169 (249)
Q Consensus 91 ~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-~~~~a~~ 169 (249)
.+++||+|++.+ ..|+|++|+.++...++++|+++++++++.+. ...++++
T Consensus 79 ~~~~Gd~V~~~~----------------------------~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~ta~~ 130 (324)
T cd08292 79 GLQVGQRVAVAP----------------------------VHGTWAEYFVAPADGLVPLPDGISDEVAAQLIAMPLSALM 130 (324)
T ss_pred CCCCCCEEEecc----------------------------CCCcceeEEEEchHHeEECCCCCCHHHhhhccccHHHHHH
Confidence 999999998652 36999999999999999999999999888665 4567888
Q ss_pred HHHHcCCCCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCCCcccHHHHHHHHHH
Q 025712 170 ACRRANVGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGRYKMQWVQ 246 (249)
Q Consensus 170 ~l~~~~~~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~~ 246 (249)
++...++++|+++||+| +|.+|++++|+|+++|+ .++++.+++++.+.++++|++++++++. +++.+.+.+++.
T Consensus 131 ~~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~G~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~i~~~~~ 205 (324)
T cd08292 131 LLDFLGVKPGQWLIQNAAGGAVGKLVAMLAAARGI-NVINLVRRDAGVAELRALGIGPVVSTEQ--PGWQDKVREAAG 205 (324)
T ss_pred HHHhhCCCCCCEEEEcccccHHHHHHHHHHHHCCC-eEEEEecCHHHHHHHHhcCCCEEEcCCC--chHHHHHHHHhC
Confidence 88778899999999997 69999999999999999 7888888888999999999999988765 678777777654
No 77
>cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo
Probab=99.96 E-value=7.4e-28 Score=208.69 Aligned_cols=207 Identities=31% Similarity=0.519 Sum_probs=175.8
Q ss_pred ceEEEEecC--CCeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCCC
Q 025712 15 NMAAWLLGI--KTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSL 92 (249)
Q Consensus 15 ~~~~~~~~~--~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~ 92 (249)
|+++++.++ +.+++++.+.|+++++||+||+.++++|++|+....+.. ...+|.++|+|++|+|+.+|++++.+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~v~v~~~~i~~~d~~~~~~~~----~~~~~~~~g~e~~G~v~~vG~~v~~~ 76 (325)
T cd08264 1 MKALVFEKSGIENLKVEDVKDPKPGPGEVLIRVKMAGVNPVDYNVINAVK----VKPMPHIPGAEFAGVVEEVGDHVKGV 76 (325)
T ss_pred CeeEEeccCCCCceEEEeccCCCCCCCeEEEEEEEEEechHHHHHHhCCC----CCCCCeecccceeEEEEEECCCCCCC
Confidence 466777654 478888988888999999999999999999987765311 12357789999999999999999999
Q ss_pred CCCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhcccc-chHHHHHHH
Q 025712 93 EVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHAC 171 (249)
Q Consensus 93 ~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-~~~~a~~~l 171 (249)
++||+|++++...|++|.+|..++.++|......+ ....|+|++|+.++.+.++++|+++++++++.+. .+.++|+++
T Consensus 77 ~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~v~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~l 155 (325)
T cd08264 77 KKGDRVVVYNRVFDGTCDMCLSGNEMLCRNGGIIG-VVSNGGYAEYIVVPEKNLFKIPDSISDELAASLPVAALTAYHAL 155 (325)
T ss_pred CCCCEEEECCCcCCCCChhhcCCCccccCccceee-ccCCCceeeEEEcCHHHceeCCCCCCHHHhhhhhhhhHHHHHHH
Confidence 99999999988899999999999999998754433 2356899999999999999999999998888666 567889888
Q ss_pred HHcCCCCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCC
Q 025712 172 RRANVGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVS 231 (249)
Q Consensus 172 ~~~~~~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~ 231 (249)
+..+++++++++|+| +|++|++++++|+.+|+ .++++. +.++++++|++++++.+
T Consensus 156 ~~~~~~~g~~vlI~g~~g~vg~~~~~~a~~~G~-~v~~~~----~~~~~~~~g~~~~~~~~ 211 (325)
T cd08264 156 KTAGLGPGETVVVFGASGNTGIFAVQLAKMMGA-EVIAVS----RKDWLKEFGADEVVDYD 211 (325)
T ss_pred HhcCCCCCCEEEEECCCchHHHHHHHHHHHcCC-eEEEEe----HHHHHHHhCCCeeecch
Confidence 778899999999998 59999999999999999 677775 23777889999888754
No 78
>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family. This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone
Probab=99.96 E-value=1.2e-27 Score=207.64 Aligned_cols=225 Identities=32% Similarity=0.514 Sum_probs=190.1
Q ss_pred ceEEEEe---cCCCeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCC
Q 025712 15 NMAAWLL---GIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKS 91 (249)
Q Consensus 15 ~~~~~~~---~~~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~ 91 (249)
|+++++. .+..+.+++.+.|.+.+++|+|++.++++|+.|+..+.+.+. .....|.++|||++|+|+.+|++++.
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~--~~~~~~~~~g~e~~G~v~~~G~~~~~ 78 (342)
T cd08266 1 MKAVVIRGHGGPEVLEYGDLPEPEPGPDEVLVRVKAAALNHLDLWVRRGMPG--IKLPLPHILGSDGAGVVEAVGPGVTN 78 (342)
T ss_pred CeEEEEecCCCccceeEeecCCCCCCCCeEEEEEEeeecCHHHHHHhcCCCC--CCCCCCeecccceEEEEEEeCCCCCC
Confidence 4677777 456788888888889999999999999999999988876432 12356889999999999999999999
Q ss_pred CCCCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhcccc-chHHHHHH
Q 025712 92 LEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHA 170 (249)
Q Consensus 92 ~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-~~~~a~~~ 170 (249)
+++||+|++.+...|++|.+|..+.+++|.+..+.|. ...|+|++|+.++.+.++++|+++++.+++.+. ...+++++
T Consensus 79 ~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~g~~~~~~~~~~~~~~~~p~~~~~~~a~~~~~~~~~a~~~ 157 (342)
T cd08266 79 VKPGQRVVIYPGISCGRCEYCLAGRENLCAQYGILGE-HVDGGYAEYVAVPARNLLPIPDNLSFEEAAAAPLTFLTAWHM 157 (342)
T ss_pred CCCCCEEEEccccccccchhhcccccccccccccccc-ccCcceeEEEEechHHceeCCCCCCHHHHHhhhhHHHHHHHH
Confidence 9999999999999999999999999999998655443 356899999999999999999999998888665 46788887
Q ss_pred H-HHcCCCCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCCCcccHHHHHHHHH
Q 025712 171 C-RRANVGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGRYKMQWV 245 (249)
Q Consensus 171 l-~~~~~~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~ 245 (249)
+ +...+.++++++|+| ++++|++++++++..|+ .++.+++++++.+.+++++.+.+++... .++.+.+.+.+
T Consensus 158 l~~~~~~~~~~~vlI~g~~~~iG~~~~~~~~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 231 (342)
T cd08266 158 LVTRARLRPGETVLVHGAGSGVGSAAIQIAKLFGA-TVIATAGSEDKLERAKELGADYVIDYRK--EDFVREVRELT 231 (342)
T ss_pred HHHhcCCCCCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCCeEEecCC--hHHHHHHHHHh
Confidence 6 557889999999998 57999999999999999 6888888999999999899888776554 55655555543
No 79
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=99.96 E-value=2.8e-27 Score=205.68 Aligned_cols=221 Identities=34% Similarity=0.566 Sum_probs=186.8
Q ss_pred ceEEEEecCCC--eEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCCC
Q 025712 15 NMAAWLLGIKT--LKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSL 92 (249)
Q Consensus 15 ~~~~~~~~~~~--l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~ 92 (249)
|+++++..++. +.+++.+.|.+++++|+|++.++++|+.|.....+.+. .....|.++|+|++|+|+.+|+++..+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~g~~~--~~~~~~~~~g~~~~G~v~~~G~~v~~~ 78 (338)
T cd08254 1 MKAWRFHKGSKGLLVLEEVPVPEPGPGEVLVKVKAAGVCHSDLHILDGGVP--TLTKLPLTLGHEIAGTVVEVGAGVTNF 78 (338)
T ss_pred CeeEEEecCCCCceEEeccCCCCCCCCeEEEEEEEEeeccHhHHHHcCCCc--ccCCCCEeccccccEEEEEECCCCccC
Confidence 57777876653 58888999999999999999999999999988876542 224567899999999999999999999
Q ss_pred CCCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhcccc-chHHHHHHH
Q 025712 93 EVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHAC 171 (249)
Q Consensus 93 ~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-~~~~a~~~l 171 (249)
++||+|++.+-..|+.|.+|..+...+|..-...+ ....|+|++|+.++.+.++++|+++++.+++.+. .+.+||+++
T Consensus 79 ~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~lp~~~~~~~a~~~~~~~~ta~~~l 157 (338)
T cd08254 79 KVGDRVAVPAVIPCGACALCRRGRGNLCLNQGMPG-LGIDGGFAEYIVVPARALVPVPDGVPFAQAAVATDAVLTPYHAV 157 (338)
T ss_pred CCCCEEEECCCCCCCCChhhhCcCcccCCCCCccc-cccCCcceeeEEechHHeEECCCCCCHHHhhhhcchHHHHHHHH
Confidence 99999999888899999999999988885432222 2357999999999999999999999998888664 788999887
Q ss_pred HH-cCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCCCcccHHHHH
Q 025712 172 RR-ANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGRYK 241 (249)
Q Consensus 172 ~~-~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~ 241 (249)
.. ..+++++++||.|+|++|++++++|+..|+ +++++++++++.+.++++|++++++... ..+.+.+
T Consensus 158 ~~~~~~~~~~~vli~g~g~vG~~~~~la~~~G~-~V~~~~~s~~~~~~~~~~g~~~~~~~~~--~~~~~~~ 225 (338)
T cd08254 158 VRAGEVKPGETVLVIGLGGLGLNAVQIAKAMGA-AVIAVDIKEEKLELAKELGADEVLNSLD--DSPKDKK 225 (338)
T ss_pred HhccCCCCCCEEEEECCcHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHhCCCEEEcCCC--cCHHHHH
Confidence 44 678999999999889999999999999999 6899999999999999999999887654 4444444
No 80
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=99.96 E-value=3e-27 Score=205.27 Aligned_cols=212 Identities=32% Similarity=0.461 Sum_probs=183.5
Q ss_pred eEEEEecC-CCeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCCCCC
Q 025712 16 MAAWLLGI-KTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEV 94 (249)
Q Consensus 16 ~~~~~~~~-~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~ 94 (249)
|++++.++ ..+++++.|.|.+.+++|+|++.++++|+.|...+.+... ....|.++|+|++|+|+++|++++++++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~---~~~~p~~~g~e~~G~v~~~g~~~~~~~~ 77 (330)
T cd08245 1 KAAVVHAAGGPLEPEEVPVPEPGPGEVLIKIEACGVCHTDLHAAEGDWG---GSKYPLVPGHEIVGEVVEVGAGVEGRKV 77 (330)
T ss_pred CeEEEecCCCCceEEeccCCCCCCCeEEEEEEEEeccHHHHHHHcCCCC---CCCCCcccCccceEEEEEECCCCccccc
Confidence 46777777 5899999999999999999999999999999988876542 1345789999999999999999999999
Q ss_pred CCeEEEccC-cCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhcccc-chHHHHHHHH
Q 025712 95 GDRVALEPG-ISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHACR 172 (249)
Q Consensus 95 Gd~V~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-~~~~a~~~l~ 172 (249)
||+|++.+. ..|++|.+|+.++.++|.+....+. ...|+|++|+.++.+.++++|+++++.+++.+. ...+||.+++
T Consensus 78 Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~v~~~~~~~~p~~~~~~~~~~l~~~~~ta~~~l~ 156 (330)
T cd08245 78 GDRVGVGWLVGSCGRCEYCRRGLENLCQKAVNTGY-TTQGGYAEYMVADAEYTVLLPDGLPLAQAAPLLCAGITVYSALR 156 (330)
T ss_pred CCEEEEccccCCCCCChhhhCcCcccCcCccccCc-ccCCccccEEEEcHHHeEECCCCCCHHHhhhhhhhHHHHHHHHH
Confidence 999987654 5799999999999999987433321 246899999999999999999999999888655 5678888887
Q ss_pred HcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCC
Q 025712 173 RANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVST 232 (249)
Q Consensus 173 ~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~ 232 (249)
...++++++++|+|+|++|++++++++.+|+ .++++++++++.++++++|++.+++...
T Consensus 157 ~~~~~~~~~vlI~g~g~iG~~~~~~a~~~G~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~ 215 (330)
T cd08245 157 DAGPRPGERVAVLGIGGLGHLAVQYARAMGF-ETVAITRSPDKRELARKLGADEVVDSGA 215 (330)
T ss_pred hhCCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhCCcEEeccCC
Confidence 7889999999999988899999999999999 7899889999999999999999887654
No 81
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=99.96 E-value=4.5e-27 Score=203.90 Aligned_cols=179 Identities=19% Similarity=0.191 Sum_probs=150.1
Q ss_pred CCeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCCCCCCCeEEEccC
Q 025712 24 KTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPG 103 (249)
Q Consensus 24 ~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~ 103 (249)
+.+++++.+.|+|+++||||||++++||+.|..+.. .....|.++|+|++|+|++ .++.|++||+|+.+
T Consensus 19 ~~l~~~~~~~p~~~~~evlVkv~a~~in~~~~~~~~------~~~~~p~v~G~e~~G~V~~---~~~~~~~Gd~V~~~-- 87 (329)
T cd08294 19 SDFELVEEELPPLKDGEVLCEALFLSVDPYMRPYSK------RLNEGDTMIGTQVAKVIES---KNSKFPVGTIVVAS-- 87 (329)
T ss_pred cceEEEecCCCCCCCCcEEEEEEEEecCHHHhcccc------cCCCCCcEecceEEEEEec---CCCCCCCCCEEEee--
Confidence 468999999999999999999999999987654211 1124688999999999985 45679999999743
Q ss_pred cCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCC---ceEECCCCCC------hhhhccccchHHHHHHH-HH
Q 025712 104 ISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAK---LCYKLPDNVS------LEEGAMCEPLSVGVHAC-RR 173 (249)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~~~ip~~~~------~~~aa~~~~~~~a~~~l-~~ 173 (249)
++|++|..++.+ .++++|++++ ...+++...+.+||+++ +.
T Consensus 88 -----------------------------~~~~~~~~~~~~~~~~~~~iP~~~~~~~~~~~~~a~~~~~~~ta~~al~~~ 138 (329)
T cd08294 88 -----------------------------FGWRTHTVSDGKDQPDLYKLPADLPDDLPPSLALGVLGMPGLTAYFGLLEI 138 (329)
T ss_pred -----------------------------CCeeeEEEECCccccceEECCccccccCChHHHHHhcccHHHHHHHHHHHh
Confidence 578999999999 9999999987 22233344688999998 56
Q ss_pred cCCCCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCCCcccHHHHHHHHH
Q 025712 174 ANVGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGRYKMQWV 245 (249)
Q Consensus 174 ~~~~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~ 245 (249)
.++++|+++||+| +|++|++++|+|+.+|+ +++++++++++.++++++|+++++++++ +++.+.+++++
T Consensus 139 ~~~~~g~~vlI~ga~g~vG~~aiqlA~~~G~-~vi~~~~s~~~~~~l~~~Ga~~vi~~~~--~~~~~~v~~~~ 208 (329)
T cd08294 139 CKPKAGETVVVNGAAGAVGSLVGQIAKIKGC-KVIGCAGSDDKVAWLKELGFDAVFNYKT--VSLEEALKEAA 208 (329)
T ss_pred cCCCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCCEEEeCCC--ccHHHHHHHHC
Confidence 8899999999998 79999999999999999 7999999999999999999999998876 67877776654
No 82
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=99.96 E-value=8.1e-27 Score=203.60 Aligned_cols=188 Identities=18% Similarity=0.159 Sum_probs=154.0
Q ss_pred CCCeEEEEecC----CCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccce--EEEEEEecCCCCCCCCCC
Q 025712 23 IKTLKIQPYHL----PTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHEC--AGIIEEVGSEVKSLEVGD 96 (249)
Q Consensus 23 ~~~l~~~~~~~----p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~--~G~V~~vG~~v~~~~~Gd 96 (249)
++.|++++.+. |+|+++||||||+|++||+.|+..+.+.+.. ....|.++|++. .|.+..+|+.++.|++||
T Consensus 18 ~~~~~~~~~~~~~~~p~p~~~~vlv~v~~~~inp~d~~~~~g~~~~--~~~~p~~~g~~~~g~~~~~~v~~~v~~~~vGd 95 (338)
T cd08295 18 ESDLELRTTKLTLKVPPGGSGDVLVKNLYLSCDPYMRGRMKGHDDS--LYLPPFKPGEVITGYGVAKVVDSGNPDFKVGD 95 (338)
T ss_pred ccceEEEEecCCcCCCCCCCCeEEEEEEEEeeCHHHHHhhccCCcc--ccCCCcCCCCeEeccEEEEEEecCCCCCCCCC
Confidence 35799999887 8899999999999999999999888774311 124577888754 456666788888999999
Q ss_pred eEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecC-CceEECC-CCCChh-hhcccc-chHHHHHHH-
Q 025712 97 RVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPA-KLCYKLP-DNVSLE-EGAMCE-PLSVGVHAC- 171 (249)
Q Consensus 97 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~ip-~~~~~~-~aa~~~-~~~~a~~~l- 171 (249)
+|+.+ |+|+||+.++. ..++++| +++++. +++.+. .+.+||+++
T Consensus 96 ~V~~~-------------------------------g~~aey~~v~~~~~~~~lp~~~~~~~~~aa~l~~~~~tA~~~l~ 144 (338)
T cd08295 96 LVWGF-------------------------------TGWEEYSLIPRGQDLRKIDHTDVPLSYYLGLLGMPGLTAYAGFY 144 (338)
T ss_pred EEEec-------------------------------CCceeEEEecchhceeecCCCCCCHHHHHHhcccHHHHHHHHHH
Confidence 99743 78999999999 7999995 568775 555444 678999998
Q ss_pred HHcCCCCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHH-cCCCEEecCCCCcccHHHHHHHHH
Q 025712 172 RRANVGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN-LGADETAKVSTDIEMWGRYKMQWV 245 (249)
Q Consensus 172 ~~~~~~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~-~ga~~vi~~~~~~~~~~~~~~~~~ 245 (249)
+..++++|+++||+| +|++|++++|+|+.+|+ +++++++++++.+++++ +|++++++++++ +++.+.+++++
T Consensus 145 ~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~-~Vi~~~~~~~~~~~~~~~lGa~~vi~~~~~-~~~~~~i~~~~ 218 (338)
T cd08295 145 EVCKPKKGETVFVSAASGAVGQLVGQLAKLKGC-YVVGSAGSDEKVDLLKNKLGFDDAFNYKEE-PDLDAALKRYF 218 (338)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcCCceeEEcCCc-ccHHHHHHHhC
Confidence 457899999999998 59999999999999999 78888899999999998 999999987642 46777666543
No 83
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=99.95 E-value=5.4e-27 Score=203.62 Aligned_cols=181 Identities=17% Similarity=0.179 Sum_probs=150.2
Q ss_pred cCCCeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCCCCCCCeEEEc
Q 025712 22 GIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALE 101 (249)
Q Consensus 22 ~~~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~ 101 (249)
+|+.|+++|.+.|+|++|||||||.|+++|+.+. .+.+. ....|.++|.|++|+|++.|+ .|++||+|+.+
T Consensus 15 ~~~~l~~~~~~~p~~~~~evlv~v~a~~~n~~~~---~g~~~---~~~~~~i~G~~~~g~v~~~~~---~~~~GdrV~~~ 85 (325)
T TIGR02825 15 TDSDFELKTVELPPLNNGEVLLEALFLSVDPYMR---VAAKR---LKEGDTMMGQQVARVVESKNV---ALPKGTIVLAS 85 (325)
T ss_pred CCCceEEEeccCCCCCCCcEEEEEEEEecCHHHh---cccCc---CCCCCcEecceEEEEEEeCCC---CCCCCCEEEEe
Confidence 5678999999999999999999999999999654 33221 123478999999999999874 59999999853
Q ss_pred cCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEEC----CCCCChhhh-ccc-cchHHHHHHH-HHc
Q 025712 102 PGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKL----PDNVSLEEG-AMC-EPLSVGVHAC-RRA 174 (249)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i----p~~~~~~~a-a~~-~~~~~a~~~l-~~~ 174 (249)
++|++|+.++.+.+.++ |++++++++ +.+ .++.+||+++ +.+
T Consensus 86 -------------------------------~~~~~~~~~~~~~~~~l~~~~p~~~~~~~aaa~l~~~~~TA~~~l~~~~ 134 (325)
T TIGR02825 86 -------------------------------PGWTSHSISDGKDLEKLLTEWPDTLPLSLALGTVGMPGLTAYFGLLEIC 134 (325)
T ss_pred -------------------------------cCceeeEEechhheEEccccccCCCCHHHHHHhcccHHHHHHHHHHHHh
Confidence 46899999999888877 888998887 444 4688999987 668
Q ss_pred CCCCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCCCcccHHHHHHHH
Q 025712 175 NVGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGRYKMQW 244 (249)
Q Consensus 175 ~~~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~ 244 (249)
++++|++|||+| +|++|++++|+|+..|+ +++++++++++.++++++|+++++++++. +++.+.+.+.
T Consensus 135 ~~~~g~~VLI~ga~g~vG~~aiqlAk~~G~-~Vi~~~~s~~~~~~~~~lGa~~vi~~~~~-~~~~~~~~~~ 203 (325)
T TIGR02825 135 GVKGGETVMVNAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKVAYLKKLGFDVAFNYKTV-KSLEETLKKA 203 (325)
T ss_pred CCCCCCEEEEeCCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCCEEEecccc-ccHHHHHHHh
Confidence 899999999998 69999999999999999 78999899999999999999999987752 2455555443
No 84
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=99.95 E-value=1.6e-26 Score=202.67 Aligned_cols=197 Identities=15% Similarity=0.130 Sum_probs=156.2
Q ss_pred ccceEEEEe-------cCCCeEEEEe---cCC-CCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceecc--ceE
Q 025712 13 NQNMAAWLL-------GIKTLKIQPY---HLP-TLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGH--ECA 79 (249)
Q Consensus 13 ~~~~~~~~~-------~~~~l~~~~~---~~p-~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~--e~~ 79 (249)
.++|++++. .++.|++++. +.| ++++|||||||.++++||.|...+.+.+ .....|+++|+ |++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~gevlVkv~a~~inp~~~~~~~~~~---~~~~~p~~~G~~~~~~ 83 (348)
T PLN03154 7 VENKQVILKNYIDGIPKETDMEVKLGNKIELKAPKGSGAFLVKNLYLSCDPYMRGRMRDFH---DSYLPPFVPGQRIEGF 83 (348)
T ss_pred ccceEEEEecCCCCCCCcccEEEEeecccCCCCCCCCCeEEEEEEEEccCHHHHHhhhccC---CCCCCCcCCCCeeEee
Confidence 346777765 2346888884 666 4589999999999999999876443311 11235889997 889
Q ss_pred EEEEEecCCCCCCCCCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCc--eE--ECCCCCCh
Q 025712 80 GIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKL--CY--KLPDNVSL 155 (249)
Q Consensus 80 G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~--~ip~~~~~ 155 (249)
|+|..+|++++.|++||+|+. .|+|+||..++... ++ ++|+++++
T Consensus 84 G~v~~vg~~v~~~~~Gd~V~~-------------------------------~~~~aey~~v~~~~~~~~~~~~P~~~~~ 132 (348)
T PLN03154 84 GVSKVVDSDDPNFKPGDLISG-------------------------------ITGWEEYSLIRSSDNQLRKIQLQDDIPL 132 (348)
T ss_pred EEEEEEecCCCCCCCCCEEEe-------------------------------cCCcEEEEEEeccccceEEccCcCCCCH
Confidence 999999999999999999974 37899999998753 54 45899988
Q ss_pred h-hhcccc-chHHHHHHH-HHcCCCCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHH-HcCCCEEecC
Q 025712 156 E-EGAMCE-PLSVGVHAC-RRANVGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR-NLGADETAKV 230 (249)
Q Consensus 156 ~-~aa~~~-~~~~a~~~l-~~~~~~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~-~~ga~~vi~~ 230 (249)
+ +++.+. ...+||+++ +...+++|++|||+| +|++|++++|+||++|+ +++++++++++.++++ ++|+++++|+
T Consensus 133 ~~~aa~l~~~~~TA~~al~~~~~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~-~Vi~~~~~~~k~~~~~~~lGa~~vi~~ 211 (348)
T PLN03154 133 SYHLGLLGMAGFTAYAGFYEVCSPKKGDSVFVSAASGAVGQLVGQLAKLHGC-YVVGSAGSSQKVDLLKNKLGFDEAFNY 211 (348)
T ss_pred HHHHHHcccHHHHHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHhcCCCEEEEC
Confidence 6 555554 678999988 457899999999998 59999999999999999 7999989999999997 7999999997
Q ss_pred CCCcccHHHHHHHHH
Q 025712 231 STDIEMWGRYKMQWV 245 (249)
Q Consensus 231 ~~~~~~~~~~~~~~~ 245 (249)
++. +++.+.+++++
T Consensus 212 ~~~-~~~~~~i~~~~ 225 (348)
T PLN03154 212 KEE-PDLDAALKRYF 225 (348)
T ss_pred CCc-ccHHHHHHHHC
Confidence 642 36767666553
No 85
>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.
Probab=99.95 E-value=7.5e-27 Score=203.19 Aligned_cols=189 Identities=22% Similarity=0.268 Sum_probs=160.7
Q ss_pred CCCeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCCCCCCCeEEEcc
Q 025712 23 IKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEP 102 (249)
Q Consensus 23 ~~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~ 102 (249)
++.++++++|.|+|+++||+|||+++++|+.|...+.+... ...+|.++|+|++|+|+++|++++.+++||+|+.+.
T Consensus 14 ~~~~~~~~~~~p~~~~~ev~Ikv~~~~i~~~d~~~~~g~~~---~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~ 90 (336)
T TIGR02817 14 PDALVDIDLPKPKPGGRDLLVEVKAISVNPVDTKVRARMAP---EAGQPKILGWDAAGVVVAVGDEVTLFKPGDEVWYAG 90 (336)
T ss_pred cccceecccCCCCCCCCEEEEEEEEEEcChHHHHHHcCCCC---CCCCCcccceeeEEEEEEeCCCCCCCCCCCEEEEcC
Confidence 45789999999999999999999999999999987766431 134678999999999999999999999999998641
Q ss_pred CcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhcccc-chHHHHHHH-HHcCCCC--
Q 025712 103 GISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHAC-RRANVGP-- 178 (249)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-~~~~a~~~l-~~~~~~~-- 178 (249)
. ....|+|++|+.++.+.++++|+++++++++.++ ...+||+++ ...++.+
T Consensus 91 ~-------------------------~~~~g~~~~~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~ 145 (336)
T TIGR02817 91 D-------------------------IDRPGSNAEFHLVDERIVGHKPKSLSFAEAAALPLTSITAWELLFDRLGINDPV 145 (336)
T ss_pred C-------------------------CCCCCcccceEEEcHHHcccCCCCCCHHHHhhhhHHHHHHHHHHHHhcCCCCCC
Confidence 0 1136999999999999999999999999988666 567888887 5577766
Q ss_pred ---CCeEEEEc-CChHHHHHHHHHHHc-CCCeEEEEeCChhHHHHHHHcCCCEEecCCCCcccHHHHHHH
Q 025712 179 ---ETNVMIMG-SGPIGLVTLLAARAF-GAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGRYKMQ 243 (249)
Q Consensus 179 ---g~~vlI~G-~g~vG~~ai~la~~~-G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~ 243 (249)
|+++||+| +|++|++++|+|+.+ |+ .++++.+++++.++++++|++++++++. ++.+.+.+
T Consensus 146 ~~~g~~vlV~ga~g~vg~~~~~~ak~~~G~-~vi~~~~~~~~~~~l~~~g~~~~~~~~~---~~~~~i~~ 211 (336)
T TIGR02817 146 AGDKRALLIIGGAGGVGSILIQLARQLTGL-TVIATASRPESQEWVLELGAHHVIDHSK---PLKAQLEK 211 (336)
T ss_pred CCCCCEEEEEcCCcHHHHHHHHHHHHhCCC-EEEEEcCcHHHHHHHHHcCCCEEEECCC---CHHHHHHH
Confidence 99999998 699999999999998 99 7999988999999999999999998653 56666654
No 86
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.95 E-value=6.5e-26 Score=198.35 Aligned_cols=206 Identities=25% Similarity=0.335 Sum_probs=164.7
Q ss_pred ceEEEEecCC---CeEEEE-ecCCCCCCCcEEEEEeEEecccchHhhHhccccc-----------------ccCCCCCce
Q 025712 15 NMAAWLLGIK---TLKIQP-YHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCA-----------------NFIVKKPMV 73 (249)
Q Consensus 15 ~~~~~~~~~~---~l~~~~-~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~-----------------~~~~~~p~~ 73 (249)
|+++++.+++ .+.+.+ .+.|.+.+++|+|||.++++|++|+....+.+.. ......|.+
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 80 (350)
T cd08274 1 MRAVLLTGHGGLDKLVYRDDVPVPTPAPGEVLIRVGACGVNNTDINTREGWYSTEVDGATDSTGAGEAGWWGGTLSFPRI 80 (350)
T ss_pred CeEEEEeccCCccceeecccCCCCCCCCCeEEEEEEeccCCHHHHHHhcCCCCCccccccccccccccccccCCCCCCcc
Confidence 4566666543 466654 5777889999999999999999999887664321 012457889
Q ss_pred eccceEEEEEEecCCCCCCCCCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCC
Q 025712 74 IGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNV 153 (249)
Q Consensus 74 ~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~ 153 (249)
+|||++|+|+++|++++.+++||+|++.+...|++|..|.. | ...+ ....|+|++|+.++...++++|+++
T Consensus 81 ~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~-----~---~~~~-~~~~g~~~~~~~v~~~~~~~ip~~~ 151 (350)
T cd08274 81 QGADIVGRVVAVGEGVDTARIGERVLVDPSIRDPPEDDPAD-----I---DYIG-SERDGGFAEYTVVPAENAYPVNSPL 151 (350)
T ss_pred cCCcceEEEEEeCCCCCCCCCCCEEEEecCcCCCCcccccc-----c---cccC-CCCCccceEEEEecHHHceeCCCCC
Confidence 99999999999999999999999999987777887765431 1 1122 1235999999999999999999999
Q ss_pred Chhhhcccc-chHHHHHHHHHcCCCCCCeEEEEcC-ChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCC
Q 025712 154 SLEEGAMCE-PLSVGVHACRRANVGPETNVMIMGS-GPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVS 231 (249)
Q Consensus 154 ~~~~aa~~~-~~~~a~~~l~~~~~~~g~~vlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~ 231 (249)
++.+++.+. .+.++|+++....+++|+++||+|+ |++|++++++|+.+|+ .++++.+++ +.+.++++|++.+++.+
T Consensus 152 ~~~~~a~l~~~~~ta~~~~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~g~-~vi~~~~~~-~~~~~~~~g~~~~~~~~ 229 (350)
T cd08274 152 SDVELATFPCSYSTAENMLERAGVGAGETVLVTGASGGVGSALVQLAKRRGA-IVIAVAGAA-KEEAVRALGADTVILRD 229 (350)
T ss_pred CHHHHHhcccHHHHHHHHHhhcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCC-EEEEEeCch-hhHHHHhcCCeEEEeCC
Confidence 998877665 6778898887788999999999985 9999999999999999 577777655 88899999998666543
No 87
>cd08290 ETR 2-enoyl thioester reductase (ETR). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f
Probab=99.95 E-value=3.8e-26 Score=199.22 Aligned_cols=203 Identities=23% Similarity=0.247 Sum_probs=165.6
Q ss_pred ceEEEEecCCC----eEEEEecCCCCCC-CcEEEEEeEEecccchHhhHhcccccccC--CCCCceeccceEEEEEEecC
Q 025712 15 NMAAWLLGIKT----LKIQPYHLPTLGP-QDVKVRIKALGICGSDVHHFKTMRCANFI--VKKPMVIGHECAGIIEEVGS 87 (249)
Q Consensus 15 ~~~~~~~~~~~----l~~~~~~~p~~~~-~eVlV~v~~~~i~~~D~~~~~~~~~~~~~--~~~p~~~G~e~~G~V~~vG~ 87 (249)
|+++++.+++. +.+++.|.|+|.+ ++|+||+.++++|+.|...+.+....... ...|.++|+|++|+|+++|+
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~v~v~v~~~gi~~~d~~~~~g~~~~~~~~~~~~~~~~g~e~~G~V~~vG~ 80 (341)
T cd08290 1 AKALVYTEHGEPKEVLQLESYEIPPPGPPNEVLVKMLAAPINPADINQIQGVYPIKPPTTPEPPAVGGNEGVGEVVKVGS 80 (341)
T ss_pred CceEEEccCCCchhheEEeecCCCCCCCCCEEEEEEEecCCCHHHHHHhcCcCCCCCcccCCCCCCCCcceEEEEEEeCC
Confidence 57888886653 8999999998887 99999999999999999887764321100 12577999999999999999
Q ss_pred CCCCCCCCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhcccc-chHH
Q 025712 88 EVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSV 166 (249)
Q Consensus 88 ~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-~~~~ 166 (249)
+++.+++||+|++.+. ..|+|++|+.++.+.++++|+++++++++.+. ...+
T Consensus 81 ~v~~~~~Gd~V~~~~~---------------------------~~g~~~~~~~v~~~~~~~lp~~~~~~~aa~~~~~~~t 133 (341)
T cd08290 81 GVKSLKPGDWVIPLRP---------------------------GLGTWRTHAVVPADDLIKVPNDVDPEQAATLSVNPCT 133 (341)
T ss_pred CCCCCCCCCEEEecCC---------------------------CCccchheEeccHHHeEeCCCCCCHHHHHHhhccHHH
Confidence 9999999999986521 25999999999999999999999998888765 5778
Q ss_pred HHHHHH-HcCCCCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCCh----hHHHHHHHcCCCEEecCCCC-cccHHH
Q 025712 167 GVHACR-RANVGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDV----QRLSIARNLGADETAKVSTD-IEMWGR 239 (249)
Q Consensus 167 a~~~l~-~~~~~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~----~~~~~~~~~ga~~vi~~~~~-~~~~~~ 239 (249)
+|+++. ...+.+++++||+| +|++|++++++|+..|+ .++++.+++ ++.+.++++|++++++++.. ..++.+
T Consensus 134 a~~~l~~~~~~~~g~~vlI~g~~g~vg~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 212 (341)
T cd08290 134 AYRLLEDFVKLQPGDWVIQNGANSAVGQAVIQLAKLLGI-KTINVVRDRPDLEELKERLKALGADHVLTEEELRSLLATE 212 (341)
T ss_pred HHHHHHhhcccCCCCEEEEccchhHHHHHHHHHHHHcCC-eEEEEEcCCCcchhHHHHHHhcCCCEEEeCcccccccHHH
Confidence 898884 46789999999998 69999999999999999 566666555 67888899999999987641 015666
Q ss_pred HHHHHH
Q 025712 240 YKMQWV 245 (249)
Q Consensus 240 ~~~~~~ 245 (249)
.+.+++
T Consensus 213 ~i~~~~ 218 (341)
T cd08290 213 LLKSAP 218 (341)
T ss_pred HHHHHc
Confidence 666543
No 88
>cd08244 MDR_enoyl_red Possible enoyl reductase. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr
Probab=99.95 E-value=1e-25 Score=194.75 Aligned_cols=202 Identities=23% Similarity=0.296 Sum_probs=167.5
Q ss_pred ceEEEEecC---CCeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCC
Q 025712 15 NMAAWLLGI---KTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKS 91 (249)
Q Consensus 15 ~~~~~~~~~---~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~ 91 (249)
|++++++++ ..+.+.+.+.|.+.+++|+|++.++++|+.|+....+..........|.++|+|++|+|+++|+++..
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~g~e~~G~v~~~G~~v~~ 80 (324)
T cd08244 1 MRAIRLHEFGPPEVLVPEDVPDPVPGPGQVRIAVAAAGVHFVDTQLRSGWGPGPFPPELPYVPGGEVAGVVDAVGPGVDP 80 (324)
T ss_pred CeEEEEcCCCCccceEEeccCCCCCCCCEEEEEEEEEeCCHHHHHHhCCCCCCCCCCCCCcCCccceEEEEEEeCCCCCC
Confidence 466777653 45778888888889999999999999999999887765422222456788999999999999999999
Q ss_pred CCCCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhcccc-chHHHHHH
Q 025712 92 LEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHA 170 (249)
Q Consensus 92 ~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-~~~~a~~~ 170 (249)
+++||+|++... ...|+|++|+.++...++++|+++++.+++.+. .+.++|..
T Consensus 81 ~~~Gd~V~~~~~--------------------------~~~g~~~~~~~v~~~~~~~lp~~~~~~~a~~~~~~~~ta~~~ 134 (324)
T cd08244 81 AWLGRRVVAHTG--------------------------RAGGGYAELAVADVDSLHPVPDGLDLEAAVAVVHDGRTALGL 134 (324)
T ss_pred CCCCCEEEEccC--------------------------CCCceeeEEEEEchHHeEeCCCCCCHHHHhhhcchHHHHHHH
Confidence 999999987520 136999999999999999999999999887655 56677665
Q ss_pred HHHcCCCCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCCCcccHHHHHHHHH
Q 025712 171 CRRANVGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGRYKMQWV 245 (249)
Q Consensus 171 l~~~~~~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~ 245 (249)
+...+++++++++|+| +|++|++++++|+..|+ .++++++++++.+.++++|++++++++. .++.+.+.+++
T Consensus 135 ~~~~~~~~~~~vlI~g~~~~~g~~~~~la~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~ 207 (324)
T cd08244 135 LDLATLTPGDVVLVTAAAGGLGSLLVQLAKAAGA-TVVGAAGGPAKTALVRALGADVAVDYTR--PDWPDQVREAL 207 (324)
T ss_pred HHhcCCCCCCEEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCCEEEecCC--ccHHHHHHHHc
Confidence 6778899999999998 79999999999999999 7899989999999999999999888665 56766666543
No 89
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=99.95 E-value=8.7e-26 Score=194.21 Aligned_cols=191 Identities=32% Similarity=0.451 Sum_probs=160.9
Q ss_pred ecCCCeEEEEecCCCCCCCcEEEEEeEEecccchHhhH-hcccccccCCCCCceeccceEEEEEEecCCCCCCCCCCeEE
Q 025712 21 LGIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHF-KTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVA 99 (249)
Q Consensus 21 ~~~~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~-~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~ 99 (249)
.+++.+++++++.|++.++||+||+.++++|+.|...+ .+.... ....+|.++|+|++|+|+.+|++++.+++||+|+
T Consensus 2 ~~~~~~~~~~~~~~~l~~~ev~v~v~~~~i~~~d~~~~~~g~~~~-~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~ 80 (312)
T cd08269 2 TGPGRFEVEEHPRPTPGPGQVLVRVEGCGVCGSDLPAFNQGRPWF-VYPAEPGGPGHEGWGRVVALGPGVRGLAVGDRVA 80 (312)
T ss_pred CCCCeeEEEECCCCCCCCCeEEEEEEEeeecccchHHHccCCCCc-ccCCCCcccceeeEEEEEEECCCCcCCCCCCEEE
Confidence 45678999999999999999999999999999998876 553211 1123578999999999999999999999999998
Q ss_pred EccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhccc-cchHHHHHHHHHcCCCC
Q 025712 100 LEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMC-EPLSVGVHACRRANVGP 178 (249)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~-~~~~~a~~~l~~~~~~~ 178 (249)
++ ..|+|++|+.++.+.++++|+++ ..++.. .++.+++++++..++++
T Consensus 81 ~~-----------------------------~~g~~~~~~~v~~~~~~~lP~~~--~~~~~~~~~~~~a~~~~~~~~~~~ 129 (312)
T cd08269 81 GL-----------------------------SGGAFAEYDLADADHAVPLPSLL--DGQAFPGEPLGCALNVFRRGWIRA 129 (312)
T ss_pred Ee-----------------------------cCCcceeeEEEchhheEECCCch--hhhHHhhhhHHHHHHHHHhcCCCC
Confidence 75 35899999999999999999988 233333 56778888888888999
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCCCcccHHHHHHHHH
Q 025712 179 ETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGRYKMQWV 245 (249)
Q Consensus 179 g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~ 245 (249)
+++++|+|+|++|++++++|+..|+..++++.+++++.++++++|++++++.+. .++.+.+.+++
T Consensus 130 ~~~vlI~g~g~vg~~~~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~l~~~~ 194 (312)
T cd08269 130 GKTVAVIGAGFIGLLFLQLAAAAGARRVIAIDRRPARLALARELGATEVVTDDS--EAIVERVRELT 194 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCceEecCCC--cCHHHHHHHHc
Confidence 999999998999999999999999944888888999999999999999887554 67777777654
No 90
>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional
Probab=99.94 E-value=2.2e-25 Score=193.29 Aligned_cols=199 Identities=24% Similarity=0.260 Sum_probs=167.5
Q ss_pred ceEEEEecC---CCeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCC
Q 025712 15 NMAAWLLGI---KTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKS 91 (249)
Q Consensus 15 ~~~~~~~~~---~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~ 91 (249)
|+++.+.++ ..+++++++.|.++++||+||+.++++|+.|+....+.+.. ...|.++|+|++|.|+.+|++++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~i~v~~~gi~~~d~~~~~g~~~~---~~~~~~~g~e~~G~v~~vG~~v~~ 78 (327)
T PRK10754 2 AKRIEFHKHGGPEVLQAVEFTPADPAENEVQVENKAIGINYIDTYIRSGLYPP---PSLPSGLGTEAAGVVSKVGSGVKH 78 (327)
T ss_pred ceEEEEeccCChhHeEEeeccCCCCCCCEEEEEEEEEEcCHHHhhhcCCCCCC---CCCCCccCcceEEEEEEeCCCCCC
Confidence 566666543 57999999999999999999999999999999877664321 235778999999999999999999
Q ss_pred CCCCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhcccc-chHHHHHH
Q 025712 92 LEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHA 170 (249)
Q Consensus 92 ~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-~~~~a~~~ 170 (249)
+++||+|++.. ...|+|++|+.++.+.++++|+++++++++.+. ...+++.+
T Consensus 79 ~~~Gd~V~~~~---------------------------~~~g~~~~~v~v~~~~~~~lp~~~~~~~~~~~~~~~~ta~~~ 131 (327)
T PRK10754 79 IKVGDRVVYAQ---------------------------SALGAYSSVHNVPADKAAILPDAISFEQAAASFLKGLTVYYL 131 (327)
T ss_pred CCCCCEEEECC---------------------------CCCcceeeEEEcCHHHceeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 99999997531 135899999999999999999999998888554 56677877
Q ss_pred HH-HcCCCCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCCCcccHHHHHHHHHH
Q 025712 171 CR-RANVGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGRYKMQWVQ 246 (249)
Q Consensus 171 l~-~~~~~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~~ 246 (249)
+. ...+.+|++++|+| +|.+|++++++++.+|+ .+++++.++++.+.++++|++++++.+. .++.+.+++++.
T Consensus 132 l~~~~~~~~g~~vlI~g~~g~ig~~~~~lak~~G~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~ 206 (327)
T PRK10754 132 LRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGA-KLIGTVGSAQKAQRAKKAGAWQVINYRE--ENIVERVKEITG 206 (327)
T ss_pred HHhhcCCCCCCEEEEEeCCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHCCCCEEEcCCC--CcHHHHHHHHcC
Confidence 74 47789999999996 79999999999999999 6888889999999999999999987664 677777777654
No 91
>cd08249 enoyl_reductase_like enoyl_reductase_like. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol de
Probab=99.94 E-value=8.7e-26 Score=197.26 Aligned_cols=203 Identities=30% Similarity=0.364 Sum_probs=167.5
Q ss_pred ceEEEEecC--CCeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCCC
Q 025712 15 NMAAWLLGI--KTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSL 92 (249)
Q Consensus 15 ~~~~~~~~~--~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~ 92 (249)
|+++++..+ ..+++++++.|.++++||+||+.++++|+.|+....+.. ....|.++|+|++|+|+.+|++++.+
T Consensus 1 m~a~~~~~~~~~~~~~~~~~~p~~~~~ev~i~v~~~~i~~~d~~~~~~~~----~~~~~~~~g~e~~G~v~~vG~~v~~~ 76 (339)
T cd08249 1 QKAAVLTGPGGGLLVVVDVPVPKPGPDEVLVKVKAVALNPVDWKHQDYGF----IPSYPAILGCDFAGTVVEVGSGVTRF 76 (339)
T ss_pred CceEEeccCCCCcccccCCCCCCCCCCEEEEEEEEEEcCchheeeeeccc----ccCCCceeeeeeeEEEEEeCCCcCcC
Confidence 567888877 789999999999999999999999999999987664432 12357789999999999999999999
Q ss_pred CCCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhcccc-chHHHHHHH
Q 025712 93 EVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHAC 171 (249)
Q Consensus 93 ~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-~~~~a~~~l 171 (249)
++||+|++++...|+ ....+|+|++|+.++.+.++++|+++++.+++.+. .+.++|+++
T Consensus 77 ~~Gd~V~~~~~~~~~--------------------~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~~~~~~~~~~ta~~~l 136 (339)
T cd08249 77 KVGDRVAGFVHGGNP--------------------NDPRNGAFQEYVVADADLTAKIPDNISFEEAATLPVGLVTAALAL 136 (339)
T ss_pred CCCCEEEEEeccccC--------------------CCCCCCcccceEEechhheEECCCCCCHHHceecchHHHHHHHHH
Confidence 999999976422111 11257999999999999999999999999888766 678889887
Q ss_pred H-HcCC----------CCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCCCcccHHH
Q 025712 172 R-RANV----------GPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGR 239 (249)
Q Consensus 172 ~-~~~~----------~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~ 239 (249)
. ..+. .++++++|+| +|.+|++++++++++|+ .++.+. ++++.+.++++|+++++++.. .++.+
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~vlI~ga~g~vg~~~~~~a~~~G~-~v~~~~-~~~~~~~~~~~g~~~v~~~~~--~~~~~ 212 (339)
T cd08249 137 FQKLGLPLPPPKPSPASKGKPVLIWGGSSSVGTLAIQLAKLAGY-KVITTA-SPKNFDLVKSLGADAVFDYHD--PDVVE 212 (339)
T ss_pred hccccCCCCCCCCCCCCCCCEEEEEcChhHHHHHHHHHHHHcCC-eEEEEE-CcccHHHHHhcCCCEEEECCC--chHHH
Confidence 4 3433 7899999998 58999999999999999 677776 568999999999999998765 67777
Q ss_pred HHHHHH
Q 025712 240 YKMQWV 245 (249)
Q Consensus 240 ~~~~~~ 245 (249)
.+++++
T Consensus 213 ~l~~~~ 218 (339)
T cd08249 213 DIRAAT 218 (339)
T ss_pred HHHHhc
Confidence 776543
No 92
>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]
Probab=99.94 E-value=1.1e-25 Score=195.70 Aligned_cols=190 Identities=25% Similarity=0.345 Sum_probs=155.6
Q ss_pred CeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhccccccc-CCCCCceeccceEEE---EEEec-CCCCCCCCCCeEE
Q 025712 25 TLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANF-IVKKPMVIGHECAGI---IEEVG-SEVKSLEVGDRVA 99 (249)
Q Consensus 25 ~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~-~~~~p~~~G~e~~G~---V~~vG-~~v~~~~~Gd~V~ 99 (249)
.+..++.+.|.|.+++++|++.++++|+.|..++.+.+.... ...+|.+++.++.|. +...| ..+..+..||.+.
T Consensus 19 ~~~~~~~~iP~~~~~~~~i~~~a~a~NpiD~~~~~g~~~~~~~~~~~p~ii~~~g~~~~~~~~~~g~~~~~~~~~g~~~~ 98 (347)
T KOG1198|consen 19 VLFSEEVPIPEPEDGEVLIKVVAVALNPIDLKIRNGYYSPIPLGREFPGIIGRDGSGVVGAVESVGDDVVGGWVHGDAVV 98 (347)
T ss_pred eEEeecccCCCCCCCceEEEEEEeccChHHHHHHccCcCCCCCccCCCCccccccCCceeEEeccccccccceEeeeEEe
Confidence 455667999999999999999999999999999888653221 125775555555444 44555 3445567777665
Q ss_pred EccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhcccc-chHHHHHHHH-Hc---
Q 025712 100 LEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHACR-RA--- 174 (249)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-~~~~a~~~l~-~~--- 174 (249)
.. ...|+|+||+.++...++++|+++++++|++++ .+.+||.++. ..
T Consensus 99 ~~----------------------------~~~g~~aey~v~p~~~~~~~P~~l~~~~aa~~p~~~~tA~~al~~~~~~~ 150 (347)
T KOG1198|consen 99 AF----------------------------LSSGGLAEYVVVPEKLLVKIPESLSFEEAAALPLAALTALSALFQLAPGK 150 (347)
T ss_pred ec----------------------------cCCCceeeEEEcchhhccCCCCccChhhhhcCchHHHHHHHHHHhccccc
Confidence 43 367999999999999999999999999999887 6889999984 46
Q ss_pred ---CCCCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCCCcccHHHHHHHHH
Q 025712 175 ---NVGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGRYKMQWV 245 (249)
Q Consensus 175 ---~~~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~ 245 (249)
+.++|++|||+| +|+||++++|+|++.|+ ..+++.+++++.++++++||++++||++ +++.+.+.+.+
T Consensus 151 ~~~~~~~g~~vLv~ggsggVG~~aiQlAk~~~~-~~v~t~~s~e~~~l~k~lGAd~vvdy~~--~~~~e~~kk~~ 222 (347)
T KOG1198|consen 151 RSKKLSKGKSVLVLGGSGGVGTAAIQLAKHAGA-IKVVTACSKEKLELVKKLGADEVVDYKD--ENVVELIKKYT 222 (347)
T ss_pred cccccCCCCeEEEEeCCcHHHHHHHHHHHhcCC-cEEEEEcccchHHHHHHcCCcEeecCCC--HHHHHHHHhhc
Confidence 699999999997 79999999999999996 5666668999999999999999999998 88988888754
No 93
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=99.94 E-value=2.3e-25 Score=187.13 Aligned_cols=192 Identities=40% Similarity=0.697 Sum_probs=164.2
Q ss_pred cEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCCCCCCCeEEEccCcCCCCCccccCCCCCC
Q 025712 40 DVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNL 119 (249)
Q Consensus 40 eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~ 119 (249)
||+|+|.++++|+.|.....+.+. ....+|.++|+|++|+|+++|++++.+++||+|++.+...|++|.+|.. +
T Consensus 1 ~v~i~v~~~~i~~~d~~~~~g~~~--~~~~~~~~~G~e~~G~v~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~----~ 74 (271)
T cd05188 1 EVLVRVEAAGLCGTDLHIRRGGYP--PPPKLPLILGHEGAGVVVEVGPGVTGVKVGDRVVVLPNLGCGTCELCRE----L 74 (271)
T ss_pred CeEEEEEEEEecchhHHHHcCCCC--cCCCCCcccccccEEEEEEECCCCCcCCCCCEEEEcCCCCCCCCHHHHh----h
Confidence 689999999999999988877542 1235678999999999999999999999999999999999999999997 6
Q ss_pred CcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhccc-cchHHHHHHHHH-cCCCCCCeEEEEcCChHHHHHHHH
Q 025712 120 CPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMC-EPLSVGVHACRR-ANVGPETNVMIMGSGPIGLVTLLA 197 (249)
Q Consensus 120 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~-~~~~~a~~~l~~-~~~~~g~~vlI~G~g~vG~~ai~l 197 (249)
|......+ ....|+|++|+.++.+.++++|+++++.+++.+ ..+.+|++++.. ..+.++++++|+|+|++|++++++
T Consensus 75 ~~~~~~~~-~~~~g~~~~~~~v~~~~~~~ip~~~~~~~a~~~~~~~~~a~~~l~~~~~~~~~~~vli~g~~~~G~~~~~~ 153 (271)
T cd05188 75 CPGGGILG-EGLDGGFAEYVVVPADNLVPLPDGLSLEEAALLPEPLATAYHALRRAGVLKPGDTVLVLGAGGVGLLAAQL 153 (271)
T ss_pred CCCCCEec-cccCCcceEEEEechHHeEECCCCCCHHHhhHhcCHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHH
Confidence 76555433 346799999999999999999999999999877 478899999865 445899999999976699999999
Q ss_pred HHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCCCcccHHHHH
Q 025712 198 ARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGRYK 241 (249)
Q Consensus 198 a~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~ 241 (249)
++..|. +++++++++++.++++++|+++++++.. .++.+.+
T Consensus 154 a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~ 194 (271)
T cd05188 154 AKAAGA-RVIVTDRSDEKLELAKELGADHVIDYKE--EDLEEEL 194 (271)
T ss_pred HHHcCC-eEEEEcCCHHHHHHHHHhCCceeccCCc--CCHHHHH
Confidence 999998 8999999999999999999999887665 4554444
No 94
>PTZ00354 alcohol dehydrogenase; Provisional
Probab=99.94 E-value=4.8e-25 Score=191.22 Aligned_cols=199 Identities=23% Similarity=0.297 Sum_probs=166.7
Q ss_pred cceEEEEecCC---CeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCC
Q 025712 14 QNMAAWLLGIK---TLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVK 90 (249)
Q Consensus 14 ~~~~~~~~~~~---~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~ 90 (249)
+||++++..++ .+.+++.+.|.+.++||+|||.++++|+.|.....+.... ....|.++|+|++|+|+++|++++
T Consensus 1 ~m~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~--~~~~~~~~g~e~~G~v~~vG~~v~ 78 (334)
T PTZ00354 1 MMRAVTLKGFGGVDVLKIGESPKPAPKRNDVLIKVSAAGVNRADTLQRQGKYPP--PPGSSEILGLEVAGYVEDVGSDVK 78 (334)
T ss_pred CcEEEEEEecCCCcceEEEeCCCCCCCCCEEEEEEEEEecCHHHHHHhCCCCCC--CCCCCcccceeeEEEEEEeCCCCC
Confidence 47788888654 5778888888899999999999999999998877664321 134467899999999999999999
Q ss_pred CCCCCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhcccc-chHHHHH
Q 025712 91 SLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVH 169 (249)
Q Consensus 91 ~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-~~~~a~~ 169 (249)
.+++||+|+.+. .+|+|++|+.++.+.++++|+++++.+++.+. .+.++++
T Consensus 79 ~~~~Gd~V~~~~----------------------------~~g~~~~~~~v~~~~~~~ip~~~~~~~a~~~~~~~~ta~~ 130 (334)
T PTZ00354 79 RFKEGDRVMALL----------------------------PGGGYAEYAVAHKGHVMHIPQGYTFEEAAAIPEAFLTAWQ 130 (334)
T ss_pred CCCCCCEEEEec----------------------------CCCceeeEEEecHHHcEeCCCCCCHHHHHHHHHHHHHHHH
Confidence 999999998641 35899999999999999999999988887554 6778898
Q ss_pred HHHH-cCCCCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCCCccc-HHHHHHHHH
Q 025712 170 ACRR-ANVGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEM-WGRYKMQWV 245 (249)
Q Consensus 170 ~l~~-~~~~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~-~~~~~~~~~ 245 (249)
++.. ..+.++++++|+| +|++|+++++++++.|+ .++.+.+++++.++++++|++++++... .+ +.+.+++++
T Consensus 131 ~l~~~~~~~~~~~vlI~ga~g~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~ 206 (334)
T PTZ00354 131 LLKKHGDVKKGQSVLIHAGASGVGTAAAQLAEKYGA-ATIITTSSEEKVDFCKKLAAIILIRYPD--EEGFAPKVKKLT 206 (334)
T ss_pred HHHHhcCCCCCCEEEEEcCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCcEEEecCC--hhHHHHHHHHHh
Confidence 8854 7889999999998 69999999999999999 5666888999999999999999998764 33 667776655
No 95
>cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.94 E-value=9.8e-25 Score=189.27 Aligned_cols=220 Identities=30% Similarity=0.374 Sum_probs=176.8
Q ss_pred ceEEEEec---CCCeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCC
Q 025712 15 NMAAWLLG---IKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKS 91 (249)
Q Consensus 15 ~~~~~~~~---~~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~ 91 (249)
|+++++.. +..+++++.+.|.+.++|++|++.++++|+.|.....+.+... ...|.++|+|++|+|+.+|+++.+
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~--~~~~~~~g~e~~G~v~~~G~~~~~ 78 (336)
T cd08276 1 MKAWRLSGGGGLDNLKLVEEPVPEPGPGEVLVRVHAVSLNYRDLLILNGRYPPP--VKDPLIPLSDGAGEVVAVGEGVTR 78 (336)
T ss_pred CeEEEEeccCCCcceEEEeccCCCCCCCeEEEEEEEEecCHHHHHHhcCCCCCC--CCCCcccccceeEEEEEeCCCCcC
Confidence 56777773 4678888988888999999999999999999998876644221 246789999999999999999999
Q ss_pred CCCCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhcccc-chHHHHHH
Q 025712 92 LEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHA 170 (249)
Q Consensus 92 ~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-~~~~a~~~ 170 (249)
+++||+|++.+...|+. +.+.+|......+ ....|+|++|+.++.+.++++|+++++.+++.+. ...+||++
T Consensus 79 ~~~Gd~V~~~~~~~~~~------~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~lp~~~~~~~a~~~~~~~~~a~~~ 151 (336)
T cd08276 79 FKVGDRVVPTFFPNWLD------GPPTAEDEASALG-GPIDGVLAEYVVLPEEGLVRAPDHLSFEEAATLPCAGLTAWNA 151 (336)
T ss_pred CCCCCEEEEeccccccc------ccccccccccccc-cccCceeeeEEEecHHHeEECCCCCCHHHhhhhhHHHHHHHHH
Confidence 99999999876544433 2333443332222 2357899999999999999999999998888665 57788888
Q ss_pred HH-HcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCCCcccHHHHHHHHH
Q 025712 171 CR-RANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGRYKMQWV 245 (249)
Q Consensus 171 l~-~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~ 245 (249)
+. ...+++|++++|+|+|++|+++++++++.|+ +++.++.++++.+.++++|++++++.+.+ +++.+.+++++
T Consensus 152 l~~~~~~~~g~~vli~g~g~~g~~~~~~a~~~G~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~ 225 (336)
T cd08276 152 LFGLGPLKPGDTVLVQGTGGVSLFALQFAKAAGA-RVIATSSSDEKLERAKALGADHVINYRTT-PDWGEEVLKLT 225 (336)
T ss_pred HHhhcCCCCCCEEEEECCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCCEEEcCCcc-cCHHHHHHHHc
Confidence 74 4788999999999999999999999999999 68888899999999999999999876541 45666666654
No 96
>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members. Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=99.94 E-value=9.4e-25 Score=189.46 Aligned_cols=194 Identities=23% Similarity=0.278 Sum_probs=161.8
Q ss_pred ceEEEEecC-----CCeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCC
Q 025712 15 NMAAWLLGI-----KTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEV 89 (249)
Q Consensus 15 ~~~~~~~~~-----~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v 89 (249)
|+++++.++ +.+++++.+.|.+.++|++|||.++++|+.|+....+..... ..+|.++|+|++|+|+.+|+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~i~v~~~gi~~~d~~~~~g~~~~~--~~~p~~~g~e~~G~v~~vG~~v 79 (329)
T cd08250 2 FRKLVVHRLSPNFREATSIVDVPVPLPGPGEVLVKNRFVGINASDINFTAGRYDPG--VKPPFDCGFEGVGEVVAVGEGV 79 (329)
T ss_pred ceEEEeccCCCCcccCceEEecCCCCCCCCEEEEEEEEEecCHHHHHHHhCCCCCC--CCCCcccCceeEEEEEEECCCC
Confidence 677777743 358899999999999999999999999999998776643211 3578899999999999999999
Q ss_pred CCCCCCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhccccchHHHHH
Q 025712 90 KSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVH 169 (249)
Q Consensus 90 ~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~a~~ 169 (249)
+.+++||+|++. ..|+|++|+.++.+.++++|++. .+.+++...+.++|+
T Consensus 80 ~~~~~Gd~V~~~-----------------------------~~g~~~s~~~v~~~~~~~ip~~~-~~~a~l~~~~~ta~~ 129 (329)
T cd08250 80 TDFKVGDAVATM-----------------------------SFGAFAEYQVVPARHAVPVPELK-PEVLPLLVSGLTASI 129 (329)
T ss_pred CCCCCCCEEEEe-----------------------------cCcceeEEEEechHHeEECCCCc-chhhhcccHHHHHHH
Confidence 999999999865 46999999999999999999973 233334456789998
Q ss_pred HHHH-cCCCCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCCCcccHHHHHHH
Q 025712 170 ACRR-ANVGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGRYKMQ 243 (249)
Q Consensus 170 ~l~~-~~~~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~ 243 (249)
++.. ..+.++++++|+| +|.+|++++++++..|+ .++++.+++++.+.++++|++.+++.+. .++.+.+.+
T Consensus 130 ~l~~~~~~~~~~~vlI~ga~g~ig~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~v~~~~~--~~~~~~~~~ 202 (329)
T cd08250 130 ALEEVGEMKSGETVLVTAAAGGTGQFAVQLAKLAGC-HVIGTCSSDEKAEFLKSLGCDRPINYKT--EDLGEVLKK 202 (329)
T ss_pred HHHHhcCCCCCCEEEEEeCccHHHHHHHHHHHHcCC-eEEEEeCcHHHHHHHHHcCCceEEeCCC--ccHHHHHHH
Confidence 8844 6889999999998 79999999999999999 6888888999999999999998887654 555555544
No 97
>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases. Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so
Probab=99.94 E-value=7.4e-25 Score=189.46 Aligned_cols=191 Identities=19% Similarity=0.231 Sum_probs=157.1
Q ss_pred ceEEEEecCC---CeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCC
Q 025712 15 NMAAWLLGIK---TLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKS 91 (249)
Q Consensus 15 ~~~~~~~~~~---~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~ 91 (249)
|+++++.+++ .+++++.|.|.+.++||+||+.++++|++|+..+.|... .....|.++|+|++|+|+++ +++.
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~--~~~~~~~~~g~e~~G~v~~~--~~~~ 76 (325)
T cd05280 1 FKALVVEEQDGGVSLFLRTLPLDDLPEGDVLIRVHYSSLNYKDALAATGNGG--VTRNYPHTPGIDAAGTVVSS--DDPR 76 (325)
T ss_pred CceEEEcccCCCCcceEEeCCCCCCCCCeEEEEEEEeecChHHHHHhcCCCC--CCCCCCCccCcccEEEEEEe--CCCC
Confidence 5778888776 799999999999999999999999999999988776531 12345789999999999999 4567
Q ss_pred CCCCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhcccc-chHHHHHH
Q 025712 92 LEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHA 170 (249)
Q Consensus 92 ~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-~~~~a~~~ 170 (249)
+++||+|++.+. ..+ ....|+|++|+.++.+.++++|+++++.+++.+. ...+++.+
T Consensus 77 ~~~Gd~V~~~~~---------------------~~g-~~~~g~~~~~~~v~~~~~~~lp~~~~~~~aa~~~~~~~ta~~~ 134 (325)
T cd05280 77 FREGDEVLVTGY---------------------DLG-MNTDGGFAEYVRVPADWVVPLPEGLSLREAMILGTAGFTAALS 134 (325)
T ss_pred CCCCCEEEEccc---------------------ccC-CCCCceeEEEEEEchhhEEECCCCCCHHHHHhhHHHHHHHHHH
Confidence 999999987521 001 1246999999999999999999999999988766 46677777
Q ss_pred HHH---cCCC-CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCC
Q 025712 171 CRR---ANVG-PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVST 232 (249)
Q Consensus 171 l~~---~~~~-~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~ 232 (249)
++. .... .+++++|+| +|++|++++++|+.+|+ .++++++++++.+.++++|++++++.+.
T Consensus 135 l~~~~~~~~~~~~~~vlI~g~~g~vg~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~ 200 (325)
T cd05280 135 VHRLEDNGQTPEDGPVLVTGATGGVGSIAVAILAKLGY-TVVALTGKEEQADYLKSLGASEVLDRED 200 (325)
T ss_pred HHHHhhccCCCCCCEEEEECCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhcCCcEEEcchh
Confidence 643 2335 357999998 59999999999999999 6898999999999999999999987653
No 98
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.94 E-value=1.1e-24 Score=186.97 Aligned_cols=179 Identities=24% Similarity=0.269 Sum_probs=153.6
Q ss_pred ceEEEEec--CCCeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCCC
Q 025712 15 NMAAWLLG--IKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSL 92 (249)
Q Consensus 15 ~~~~~~~~--~~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~ 92 (249)
|+++++.+ |..+++++.+.|.+.++||+||+.++++|+.|...... ...|.++|+|++|+|+++|+++..|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~i~~~d~~~~~~-------~~~~~~~g~e~~G~v~~~G~~v~~~ 73 (305)
T cd08270 1 MRALVVDPDAPLRLRLGEVPDPQPAPHEALVRVAAISLNRGELKFAAE-------RPDGAVPGWDAAGVVERAAADGSGP 73 (305)
T ss_pred CeEEEEccCCCceeEEEecCCCCCCCCEEEEEEEEEecCHHHHHhhcc-------CCCCCcccceeEEEEEEeCCCCCCC
Confidence 35566654 56788889999999999999999999999999876542 2346789999999999999999999
Q ss_pred CCCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhcccc-chHHHHHHH
Q 025712 93 EVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHAC 171 (249)
Q Consensus 93 ~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-~~~~a~~~l 171 (249)
++||+|+.+ ...|+|++|+.++.+.++++|+++++.+++.+. .+.+||+++
T Consensus 74 ~~Gd~V~~~----------------------------~~~g~~~~~~~v~~~~~~~ip~~~~~~~a~~~~~~~~ta~~~~ 125 (305)
T cd08270 74 AVGARVVGL----------------------------GAMGAWAELVAVPTGWLAVLPDGVSFAQAATLPVAGVTALRAL 125 (305)
T ss_pred CCCCEEEEe----------------------------cCCcceeeEEEEchHHeEECCCCCCHHHHHHhHhHHHHHHHHH
Confidence 999999865 136999999999999999999999999988766 577999988
Q ss_pred HHcCCCCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEec
Q 025712 172 RRANVGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAK 229 (249)
Q Consensus 172 ~~~~~~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~ 229 (249)
......+|++++|+| .|++|++++++++..|+ .++.+++++++.+.++++|++.+++
T Consensus 126 ~~~~~~~~~~vli~g~~~~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~ 183 (305)
T cd08270 126 RRGGPLLGRRVLVTGASGGVGRFAVQLAALAGA-HVVAVVGSPARAEGLRELGAAEVVV 183 (305)
T ss_pred HHhCCCCCCEEEEECCCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCcEEEe
Confidence 665455699999998 59999999999999999 7899988999999999999876653
No 99
>cd08288 MDR_yhdh Yhdh putative quinone oxidoreductases. Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catal
Probab=99.94 E-value=1.6e-24 Score=187.56 Aligned_cols=191 Identities=20% Similarity=0.217 Sum_probs=155.3
Q ss_pred ceEEEEecCC---CeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCC
Q 025712 15 NMAAWLLGIK---TLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKS 91 (249)
Q Consensus 15 ~~~~~~~~~~---~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~ 91 (249)
|+++++.+++ .+++++.|.|+|+++||+||+.++++|+.|.....+.+. .....|.++|+|++|+|++ ++++.
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~--~~~~~~~~~g~e~~G~V~~--~~~~~ 76 (324)
T cd08288 1 FKALVLEKDDGGTSAELRELDESDLPEGDVTVEVHYSTLNYKDGLAITGKGG--IVRTFPLVPGIDLAGTVVE--SSSPR 76 (324)
T ss_pred CeeEEEeccCCCcceEEEECCCCCCCCCeEEEEEEEEecCHHHHHHhcCCcc--ccCCCCCccccceEEEEEe--CCCCC
Confidence 5677777655 689999999999999999999999999999987765431 1124578899999999998 77778
Q ss_pred CCCCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhcccc-chHHHHHH
Q 025712 92 LEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHA 170 (249)
Q Consensus 92 ~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-~~~~a~~~ 170 (249)
+++||+|+++.. . . +....|+|++|+.++.+.++++|+++++++++.+. .+.+++.+
T Consensus 77 ~~~Gd~V~~~~~---~------------------~-~~~~~g~~~~~~~v~~~~~~~lp~~~~~~~~~~~~~~~~ta~~~ 134 (324)
T cd08288 77 FKPGDRVVLTGW---G------------------V-GERHWGGYAQRARVKADWLVPLPEGLSARQAMAIGTAGFTAMLC 134 (324)
T ss_pred CCCCCEEEECCc---c------------------C-CCCCCCcceeEEEEchHHeeeCCCCCCHHHHhhhhhHHHHHHHH
Confidence 999999987520 0 0 01136899999999999999999999999888666 35566655
Q ss_pred HH---HcCCC-CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCC
Q 025712 171 CR---RANVG-PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVST 232 (249)
Q Consensus 171 l~---~~~~~-~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~ 232 (249)
+. ..... ++++++|+| +|++|++++|+|+++|+ .++++++++++.++++++|+++++++++
T Consensus 135 ~~~~~~~~~~~~~~~vlI~ga~g~vg~~~~~~A~~~G~-~vi~~~~~~~~~~~~~~~g~~~~~~~~~ 200 (324)
T cd08288 135 VMALEDHGVTPGDGPVLVTGAAGGVGSVAVALLARLGY-EVVASTGRPEEADYLRSLGASEIIDRAE 200 (324)
T ss_pred HHHHhhcCcCCCCCEEEEECCCcHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHhcCCCEEEEcch
Confidence 43 44555 678999998 59999999999999999 7888888999999999999999998764
No 100
>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]
Probab=99.93 E-value=1.1e-24 Score=180.43 Aligned_cols=193 Identities=16% Similarity=0.111 Sum_probs=158.2
Q ss_pred ceEEEEe-------cCCCeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEec-
Q 025712 15 NMAAWLL-------GIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVG- 86 (249)
Q Consensus 15 ~~~~~~~-------~~~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG- 86 (249)
++++++. .+++|++++.+.|.|+++|||||++|.+++|.- ++.......+..|+-+|...+|.++...
T Consensus 9 ~~~~~la~rP~g~p~~d~F~lee~~vp~p~~GqvLl~~~ylS~DPym----Rgrm~d~~SY~~P~~lG~~~~gg~V~~Vv 84 (340)
T COG2130 9 NRRIVLASRPEGAPVPDDFRLEEVDVPEPGEGQVLLRTLYLSLDPYM----RGRMSDAPSYAPPVELGEVMVGGTVAKVV 84 (340)
T ss_pred hheeeeccCCCCCCCCCCceeEeccCCCCCcCceEEEEEEeccCHHH----eecccCCcccCCCcCCCceeECCeeEEEE
Confidence 4566655 246899999999999999999999999998833 3322222235678888877766555443
Q ss_pred -CCCCCCCCCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCC---Chhhhcccc
Q 025712 87 -SEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNV---SLEEGAMCE 162 (249)
Q Consensus 87 -~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~---~~~~aa~~~ 162 (249)
++.+.|++||.|+. ..+|++|..++.+.+.++++.. ++....+-+
T Consensus 85 ~S~~~~f~~GD~V~~-------------------------------~~GWq~y~i~~~~~l~Kvd~~~~pl~~~LgvLGm 133 (340)
T COG2130 85 ASNHPGFQPGDIVVG-------------------------------VSGWQEYAISDGEGLRKLDPSPAPLSAYLGVLGM 133 (340)
T ss_pred ecCCCCCCCCCEEEe-------------------------------cccceEEEeechhhceecCCCCCCcchHHhhcCC
Confidence 55778999999983 4799999999999999998653 444455667
Q ss_pred chHHHHHHH-HHcCCCCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHH-cCCCEEecCCCCcccHHH
Q 025712 163 PLSVGVHAC-RRANVGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN-LGADETAKVSTDIEMWGR 239 (249)
Q Consensus 163 ~~~~a~~~l-~~~~~~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~-~ga~~vi~~~~~~~~~~~ 239 (249)
+..|||.+| +.+..++|++++|.| +|+||..+.|+||..|+ +||++..+++|.+++++ +|.+.+|||+. +++.+
T Consensus 134 pG~TAY~gLl~igqpk~GetvvVSaAaGaVGsvvgQiAKlkG~-rVVGiaGg~eK~~~l~~~lGfD~~idyk~--~d~~~ 210 (340)
T COG2130 134 PGLTAYFGLLDIGQPKAGETVVVSAAAGAVGSVVGQIAKLKGC-RVVGIAGGAEKCDFLTEELGFDAGIDYKA--EDFAQ 210 (340)
T ss_pred chHHHHHHHHHhcCCCCCCEEEEEecccccchHHHHHHHhhCC-eEEEecCCHHHHHHHHHhcCCceeeecCc--ccHHH
Confidence 888999998 558999999999997 79999999999999999 89999999999999998 99999999998 69999
Q ss_pred HHHHHH
Q 025712 240 YKMQWV 245 (249)
Q Consensus 240 ~~~~~~ 245 (249)
++.+.+
T Consensus 211 ~L~~a~ 216 (340)
T COG2130 211 ALKEAC 216 (340)
T ss_pred HHHHHC
Confidence 888754
No 101
>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1. Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=99.93 E-value=2e-24 Score=188.86 Aligned_cols=198 Identities=25% Similarity=0.350 Sum_probs=158.8
Q ss_pred ceEEEEecCCC----eEEEEecCCCC-CCCcEEEEEeEEecccchHhhHhccccc-------c-----cCCCCCceeccc
Q 025712 15 NMAAWLLGIKT----LKIQPYHLPTL-GPQDVKVRIKALGICGSDVHHFKTMRCA-------N-----FIVKKPMVIGHE 77 (249)
Q Consensus 15 ~~~~~~~~~~~----l~~~~~~~p~~-~~~eVlV~v~~~~i~~~D~~~~~~~~~~-------~-----~~~~~p~~~G~e 77 (249)
|+++++.+++. ++++|.+.|.| +++||+|||.++++|++|.....+...+ . .....|.++|+|
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~G~e 80 (350)
T cd08248 1 MKAWQIHSYGGIDSLLLLENARIPVIRKPNQVLIKVHAASVNPIDVLMRSGYGRTLLNKKRKPQSCKYSGIEFPLTLGRD 80 (350)
T ss_pred CceEEecccCCCcceeeecccCCCCCCCCCeEEEEEEEEecCchhHHHHcCCccchhhhhhccccccccCCCCCeeecce
Confidence 45666665443 88999999999 5999999999999999999887763210 0 023568899999
Q ss_pred eEEEEEEecCCCCCCCCCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhh
Q 025712 78 CAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEE 157 (249)
Q Consensus 78 ~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~ 157 (249)
++|+|+.+|++++++++||+|++.+.. ...|+|++|+.++.+.++++|+++++.+
T Consensus 81 ~~G~v~~vG~~v~~~~~Gd~V~~~~~~-------------------------~~~g~~~~~~~v~~~~~~~lp~~~~~~~ 135 (350)
T cd08248 81 CSGVVVDIGSGVKSFEIGDEVWGAVPP-------------------------WSQGTHAEYVVVPENEVSKKPKNLSHEE 135 (350)
T ss_pred eEEEEEecCCCcccCCCCCEEEEecCC-------------------------CCCccceeEEEecHHHeecCCCCCCHHH
Confidence 999999999999999999999875310 1369999999999999999999999988
Q ss_pred hcccc-chHHHHHHHHH-cCCC----CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecC
Q 025712 158 GAMCE-PLSVGVHACRR-ANVG----PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKV 230 (249)
Q Consensus 158 aa~~~-~~~~a~~~l~~-~~~~----~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~ 230 (249)
++.+. ...++|.++.. ..+. +|++++|+| +|++|++++++++.+|+ .++++.++ ++.+.++++|++++++.
T Consensus 136 aa~~~~~~~ta~~~l~~~~~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~G~-~v~~~~~~-~~~~~~~~~g~~~~~~~ 213 (350)
T cd08248 136 AASLPYAGLTAWSALVNVGGLNPKNAAGKRVLILGGSGGVGTFAIQLLKAWGA-HVTTTCST-DAIPLVKSLGADDVIDY 213 (350)
T ss_pred HhhchhHHHHHHHHHHHhccCCCccCCCCEEEEECCCChHHHHHHHHHHHCCC-eEEEEeCc-chHHHHHHhCCceEEEC
Confidence 88665 57788888744 5554 499999998 69999999999999999 67777654 67888899999998876
Q ss_pred CCCcccHHHHH
Q 025712 231 STDIEMWGRYK 241 (249)
Q Consensus 231 ~~~~~~~~~~~ 241 (249)
.. .++.+.+
T Consensus 214 ~~--~~~~~~l 222 (350)
T cd08248 214 NN--EDFEEEL 222 (350)
T ss_pred CC--hhHHHHH
Confidence 54 4554444
No 102
>cd05282 ETR_like 2-enoyl thioester reductase-like. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman
Probab=99.93 E-value=1.7e-24 Score=187.08 Aligned_cols=189 Identities=26% Similarity=0.287 Sum_probs=161.4
Q ss_pred CeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCCCCCCCeEEEccCc
Q 025712 25 TLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGI 104 (249)
Q Consensus 25 ~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~ 104 (249)
.+.+++.+.|.+.+++|+|||.++++|+.|...+.+.... ....|.++|+|++|+|+.+|++++.+++||+|++.+
T Consensus 13 ~~~~~~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~~~~~~--~~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~-- 88 (323)
T cd05282 13 VLELVSLPIPPPGPGEVLVRMLAAPINPSDLITISGAYGS--RPPLPAVPGNEGVGVVVEVGSGVSGLLVGQRVLPLG-- 88 (323)
T ss_pred eEEeEeCCCCCCCCCeEEEEEEeccCCHHHHHHhcCcCCC--CCCCCCcCCcceEEEEEEeCCCCCCCCCCCEEEEeC--
Confidence 6888899999999999999999999999998877664321 234678999999999999999999999999999752
Q ss_pred CCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhcccc-chHHHHHHH-HHcCCCCCCeE
Q 025712 105 SCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHAC-RRANVGPETNV 182 (249)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-~~~~a~~~l-~~~~~~~g~~v 182 (249)
..|+|++|+.++.+.++++|+++++.+++.+. ...++|.++ ....+.+++++
T Consensus 89 --------------------------~~g~~~~~~~~~~~~~~~lp~~~~~~~~a~~~~~~~ta~~~~~~~~~~~~~~~v 142 (323)
T cd05282 89 --------------------------GEGTWQEYVVAPADDLIPVPDSISDEQAAMLYINPLTAWLMLTEYLKLPPGDWV 142 (323)
T ss_pred --------------------------CCCcceeEEecCHHHeEECCCCCCHHHHHHHhccHHHHHHHHHHhccCCCCCEE
Confidence 15899999999999999999999988887654 567788777 44678899999
Q ss_pred EEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCCCcccHHHHHHHHHH
Q 025712 183 MIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGRYKMQWVQ 246 (249)
Q Consensus 183 lI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~~ 246 (249)
+|+| +|.+|++++++|+.+|+ .++++.+++++.+.++++|++++++++. .++.+.+.+++.
T Consensus 143 lI~g~~~~vg~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~ 204 (323)
T cd05282 143 IQNAANSAVGRMLIQLAKLLGF-KTINVVRRDEQVEELKALGADEVIDSSP--EDLAQRVKEATG 204 (323)
T ss_pred EEcccccHHHHHHHHHHHHCCC-eEEEEecChHHHHHHHhcCCCEEecccc--hhHHHHHHHHhc
Confidence 9998 58999999999999999 6888888999999999999999998765 567777776653
No 103
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=99.93 E-value=4.1e-24 Score=185.10 Aligned_cols=191 Identities=17% Similarity=0.234 Sum_probs=153.0
Q ss_pred ceEEEEecCC---CeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCC
Q 025712 15 NMAAWLLGIK---TLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKS 91 (249)
Q Consensus 15 ~~~~~~~~~~---~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~ 91 (249)
||++++.+++ .+.+++.|.|.|.++||+||+.++++|+.|.....+.. .....+|.++|+|++|+|++.| +..
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~p~~~~~ev~i~v~~~~i~~~d~~~~~~~~--~~~~~~~~~~g~e~~G~V~~~~--~~~ 76 (326)
T cd08289 1 FQALVVEKDEDDVSVSVKNLTLDDLPEGDVLIRVAYSSVNYKDGLASIPGG--KIVKRYPFIPGIDLAGTVVESN--DPR 76 (326)
T ss_pred CeeEEEeccCCcceeEEEEccCCCCCCCeEEEEEEEEecChHHhhhhcCCc--cccCCCCcCcccceeEEEEEcC--CCC
Confidence 4677777554 48899999999999999999999999999986554211 1123458899999999999954 567
Q ss_pred CCCCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhccccc-hHHHHHH
Q 025712 92 LEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEP-LSVGVHA 170 (249)
Q Consensus 92 ~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~-~~~a~~~ 170 (249)
+++||+|++.+.. .+ ....|+|++|+.++.+.++++|+++++++++.+.. ..+++.+
T Consensus 77 ~~~Gd~V~~~~~~---------------------~~-~~~~g~~~~~~~v~~~~~~~~p~~~~~~~a~~~~~~~~ta~~~ 134 (326)
T cd08289 77 FKPGDEVIVTSYD---------------------LG-VSHHGGYSEYARVPAEWVVPLPKGLTLKEAMILGTAGFTAALS 134 (326)
T ss_pred CCCCCEEEEcccc---------------------cC-CCCCCcceeEEEEcHHHeEECCCCCCHHHHhhhhhHHHHHHHH
Confidence 9999999875310 01 12469999999999999999999999999887664 5577766
Q ss_pred HHH---cCC-CCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCC
Q 025712 171 CRR---ANV-GPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVST 232 (249)
Q Consensus 171 l~~---~~~-~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~ 232 (249)
++. ... ..+++++|+| +|++|++++|+|+.+|+ .++++++++++.++++++|++++++.+.
T Consensus 135 l~~~~~~~~~~~~~~vlI~g~~g~vg~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~v~~~~~ 200 (326)
T cd08289 135 IHRLEENGLTPEQGPVLVTGATGGVGSLAVSILAKLGY-EVVASTGKADAADYLKKLGAKEVIPREE 200 (326)
T ss_pred HHHHHhcCCCCCCCEEEEEcCCchHHHHHHHHHHHCCC-eEEEEecCHHHHHHHHHcCCCEEEcchh
Confidence 633 333 3478999998 59999999999999999 7888889999999999999999987654
No 104
>TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family. This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc.
Probab=99.93 E-value=6.4e-24 Score=183.77 Aligned_cols=190 Identities=19% Similarity=0.278 Sum_probs=153.4
Q ss_pred eEEEEe---cCCCeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCCC
Q 025712 16 MAAWLL---GIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSL 92 (249)
Q Consensus 16 ~~~~~~---~~~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~ 92 (249)
|++++. +|..++++++|.|.+.++||+||+.++++|+.|.....+.+. .....|.++|+|++|+|+. .++..+
T Consensus 1 ~a~~~~~~~~~~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~--~~~~~~~~~g~e~~G~V~~--~~~~~~ 76 (323)
T TIGR02823 1 KALVVEKEDGKVSAQVETLDLSDLPEGDVLIKVAYSSLNYKDALAITGKGG--VVRSYPMIPGIDAAGTVVS--SEDPRF 76 (323)
T ss_pred CeEEEccCCCCcceeEeecCCCCCCCCeEEEEEEEEEcCHHHHHHHcCCCC--CCCCCCccceeeeEEEEEe--cCCCCC
Confidence 345555 334789999999999999999999999999999988776531 1134588999999999988 566789
Q ss_pred CCCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhccccc-hHHHHHHH
Q 025712 93 EVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEP-LSVGVHAC 171 (249)
Q Consensus 93 ~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~-~~~a~~~l 171 (249)
++||+|++++.. + +....|+|++|+.++.+.++++|+++++.+++.+.. ..+++.++
T Consensus 77 ~~Gd~V~~~~~~------------------~----~~~~~g~~~~~~~~~~~~~~~iP~~~~~~~aa~~~~~~~ta~~~~ 134 (323)
T TIGR02823 77 REGDEVIVTGYG------------------L----GVSHDGGYSQYARVPADWLVPLPEGLSLREAMALGTAGFTAALSV 134 (323)
T ss_pred CCCCEEEEccCC------------------C----CCCCCccceEEEEEchhheEECCCCCCHHHhhhhhhhHHHHHHHH
Confidence 999999875310 0 012468999999999999999999999998887664 55666655
Q ss_pred ---HHcCCCCCC-eEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCC
Q 025712 172 ---RRANVGPET-NVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVST 232 (249)
Q Consensus 172 ---~~~~~~~g~-~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~ 232 (249)
....+.+++ +++|+| +|.+|++++++|+.+|+ .++++.+++++.+.++++|++++++.++
T Consensus 135 ~~~~~~~~~~~~~~vlI~g~~g~vg~~~~~la~~~G~-~vi~~~~~~~~~~~~~~~g~~~~~~~~~ 199 (323)
T TIGR02823 135 MALERNGLTPEDGPVLVTGATGGVGSLAVAILSKLGY-EVVASTGKAEEEDYLKELGASEVIDRED 199 (323)
T ss_pred HHhhhcCCCCCCceEEEEcCCcHHHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHhcCCcEEEcccc
Confidence 334578898 999998 59999999999999999 6777778888889999999999887653
No 105
>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR). Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts
Probab=99.93 E-value=1.1e-23 Score=181.13 Aligned_cols=203 Identities=31% Similarity=0.365 Sum_probs=168.1
Q ss_pred ceEEEEecC---CCeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCC
Q 025712 15 NMAAWLLGI---KTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKS 91 (249)
Q Consensus 15 ~~~~~~~~~---~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~ 91 (249)
|+++++..+ ..+.+.+++.|.+.+++|+|++.++++|+.|.....+.... ....|.++|+|++|+|+.+|++++.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~i~v~~~~i~~~d~~~~~g~~~~--~~~~~~~~g~e~~G~v~~~g~~~~~ 78 (325)
T cd08253 1 MRAIRYHEFGAPDVLRLGDLPVPTPGPGEVLVRVHASGVNPVDTYIRAGAYPG--LPPLPYVPGSDGAGVVEAVGEGVDG 78 (325)
T ss_pred CceEEEcccCCcccceeeecCCCCCCCCEEEEEEEEEecChhHhhhccCCCCC--CCCCCeecccceEEEEEeeCCCCCC
Confidence 356666543 45888999999999999999999999999998877654321 2457889999999999999999999
Q ss_pred CCCCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhcccc-chHHHHHH
Q 025712 92 LEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHA 170 (249)
Q Consensus 92 ~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-~~~~a~~~ 170 (249)
+++||+|++.+.. .....|++++|+.++.+.++++|+++++.+++.+. .+.+++++
T Consensus 79 ~~~Gd~v~~~~~~-----------------------~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~~a~~~ 135 (325)
T cd08253 79 LKVGDRVWLTNLG-----------------------WGRRQGTAAEYVVVPADQLVPLPDGVSFEQGAALGIPALTAYRA 135 (325)
T ss_pred CCCCCEEEEeccc-----------------------cCCCCcceeeEEEecHHHcEeCCCCCCHHHHhhhhhHHHHHHHH
Confidence 9999999876310 00136899999999999999999999998887665 67788888
Q ss_pred HHH-cCCCCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCCCcccHHHHHHHHH
Q 025712 171 CRR-ANVGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGRYKMQWV 245 (249)
Q Consensus 171 l~~-~~~~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~ 245 (249)
+.. .++.+|++++|+| +|++|++++++++..|+ .++++++++++.+.++++|++++++.+. +++.+.+.+++
T Consensus 136 l~~~~~~~~g~~vlI~g~~~~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~ 209 (325)
T cd08253 136 LFHRAGAKAGETVLVHGGSGAVGHAAVQLARWAGA-RVIATASSAEGAELVRQAGADAVFNYRA--EDLADRILAAT 209 (325)
T ss_pred HHHHhCCCCCCEEEEEcCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCCEEEeCCC--cCHHHHHHHHc
Confidence 754 8889999999998 69999999999999999 7888888999999999999999987665 56766666554
No 106
>cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase. PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding
Probab=99.93 E-value=1.2e-23 Score=180.64 Aligned_cols=198 Identities=26% Similarity=0.333 Sum_probs=165.9
Q ss_pred ceEEEEec---CCCeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCC
Q 025712 15 NMAAWLLG---IKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKS 91 (249)
Q Consensus 15 ~~~~~~~~---~~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~ 91 (249)
||++++.+ +..+++++.+.|.+.+++|+||+.++++|+.|.....+.+. ....+|.++|+|++|+|+++|+++..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~--~~~~~~~~~g~e~~G~v~~vg~~~~~ 78 (323)
T cd05276 1 MKAIVIKEPGGPEVLELGEVPKPAPGPGEVLIRVAAAGVNRADLLQRQGLYP--PPPGASDILGLEVAGVVVAVGPGVTG 78 (323)
T ss_pred CeEEEEecCCCcccceEEecCCCCCCCCEEEEEEEEeecCHHHHHHhCCCCC--CCCCCCCcccceeEEEEEeeCCCCCC
Confidence 56777776 45688888888888999999999999999999887765431 12346789999999999999999999
Q ss_pred CCCCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhcccc-chHHHHHH
Q 025712 92 LEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHA 170 (249)
Q Consensus 92 ~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-~~~~a~~~ 170 (249)
+++||+|+.+ ...|+|++|+.++.+.++++|+++++.+++.+. ...+++.+
T Consensus 79 ~~~Gd~V~~~----------------------------~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~a~~~ 130 (323)
T cd05276 79 WKVGDRVCAL----------------------------LAGGGYAEYVVVPAGQLLPVPEGLSLVEAAALPEVFFTAWQN 130 (323)
T ss_pred CCCCCEEEEe----------------------------cCCCceeEEEEcCHHHhccCCCCCCHHHHhhchhHHHHHHHH
Confidence 9999999865 134899999999999999999999988887554 67788888
Q ss_pred HH-HcCCCCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCCCcccHHHHHHHHH
Q 025712 171 CR-RANVGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGRYKMQWV 245 (249)
Q Consensus 171 l~-~~~~~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~ 245 (249)
+. ...+.++++++|+| .|++|++++++++..|+ .++.+++++++.+.++++|++.+++... .++.+.+.+++
T Consensus 131 ~~~~~~~~~~~~vlv~g~~~~ig~~~~~~~~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~ 204 (323)
T cd05276 131 LFQLGGLKAGETVLIHGGASGVGTAAIQLAKALGA-RVIATAGSEEKLEACRALGADVAINYRT--EDFAEEVKEAT 204 (323)
T ss_pred HHHhcCCCCCCEEEEEcCcChHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHcCCCEEEeCCc--hhHHHHHHHHh
Confidence 74 47789999999998 69999999999999999 6888888999999999999988887664 56666665543
No 107
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=99.93 E-value=1.1e-23 Score=181.34 Aligned_cols=199 Identities=26% Similarity=0.323 Sum_probs=160.8
Q ss_pred ceEEEEecC---CCeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCC
Q 025712 15 NMAAWLLGI---KTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKS 91 (249)
Q Consensus 15 ~~~~~~~~~---~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~ 91 (249)
|+++++..+ ..+.+.+.+.|.+.++||+||+.++++|+.|+....+... ....|.++|+|++|+|+++|. ..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~---~~~~~~~~g~e~~G~v~~vG~--~~ 75 (320)
T cd08243 1 MKAIVIEQPGGPEVLKLREIPIPEPKPGWVLIRVKAFGLNRSEIFTRQGHSP---SVKFPRVLGIEAVGEVEEAPG--GT 75 (320)
T ss_pred CeEEEEcCCCCccceEEeecCCCCCCCCEEEEEEEEEecCHHHHHHhcCCCC---CCCCCccccceeEEEEEEecC--CC
Confidence 355666544 3577888888889999999999999999999987766431 134578899999999999995 57
Q ss_pred CCCCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhcccc-chHHHHHH
Q 025712 92 LEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHA 170 (249)
Q Consensus 92 ~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-~~~~a~~~ 170 (249)
+++||+|+++... + +....|+|++|+.++...++++|+++++.+++.+. .+.+||.+
T Consensus 76 ~~~Gd~V~~~~~~--------------~--------~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~ 133 (320)
T cd08243 76 FTPGQRVATAMGG--------------M--------GRTFDGSYAEYTLVPNEQVYAIDSDLSWAELAALPETYYTAWGS 133 (320)
T ss_pred CCCCCEEEEecCC--------------C--------CCCCCcccceEEEcCHHHcEeCCCCCCHHHHHhcchHHHHHHHH
Confidence 9999999875210 0 01245899999999999999999999998877555 67889988
Q ss_pred HHH-cCCCCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCCCcccHHHHHHHH
Q 025712 171 CRR-ANVGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGRYKMQW 244 (249)
Q Consensus 171 l~~-~~~~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~ 244 (249)
+.. ..+.+|++++|+| +|++|++++|+|+.+|+ .++++.+++++.+.++++|++++++. . .++.+.++++
T Consensus 134 l~~~~~~~~g~~vlV~ga~g~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~-~--~~~~~~i~~~ 205 (320)
T cd08243 134 LFRSLGLQPGDTLLIRGGTSSVGLAALKLAKALGA-TVTATTRSPERAALLKELGADEVVID-D--GAIAEQLRAA 205 (320)
T ss_pred HHHhcCCCCCCEEEEEcCCChHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhcCCcEEEec-C--ccHHHHHHHh
Confidence 854 6789999999998 59999999999999999 68888889999999999999988753 2 4566666544
No 108
>cd08252 AL_MDR Arginate lyase and other MDR family members. This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, whil
Probab=99.93 E-value=1e-23 Score=183.37 Aligned_cols=196 Identities=21% Similarity=0.275 Sum_probs=160.8
Q ss_pred ceEEEEecCCC------eEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCC
Q 025712 15 NMAAWLLGIKT------LKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSE 88 (249)
Q Consensus 15 ~~~~~~~~~~~------l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~ 88 (249)
|++.++.+++. +.+++++.|.+.+++|+||+.++++|+.|+..+.+... ....|.++|+|++|+|+.+|++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~---~~~~~~~~g~e~~G~v~~~G~~ 77 (336)
T cd08252 1 MKAIGFTQPLPITDPDSLIDIELPKPVPGGRDLLVRVEAVSVNPVDTKVRAGGAP---VPGQPKILGWDASGVVEAVGSE 77 (336)
T ss_pred CceEEecCCCCCCcccceeEccCCCCCCCCCEEEEEEEEEEcCHHHHHHHcCCCC---CCCCCcccccceEEEEEEcCCC
Confidence 46777776643 66678888889999999999999999999887665331 1345778999999999999999
Q ss_pred CCCCCCCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhcccc-chHHH
Q 025712 89 VKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVG 167 (249)
Q Consensus 89 v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-~~~~a 167 (249)
+..+++||+|..... ....|+|++|+.++.+.++++|+++++.+++.+. ...++
T Consensus 78 v~~~~~Gd~V~~~~~-------------------------~~~~g~~~~~~~v~~~~~~~ip~~~~~~~~~~~~~~~~ta 132 (336)
T cd08252 78 VTLFKVGDEVYYAGD-------------------------ITRPGSNAEYQLVDERIVGHKPKSLSFAEAAALPLTSLTA 132 (336)
T ss_pred CCCCCCCCEEEEcCC-------------------------CCCCccceEEEEEchHHeeeCCCCCCHHHhhhhhhHHHHH
Confidence 999999999986410 0146899999999999999999999998888665 45678
Q ss_pred HHHH-HHcCCCC-----CCeEEEEc-CChHHHHHHHHHHHcC-CCeEEEEeCChhHHHHHHHcCCCEEecCCCCcccHHH
Q 025712 168 VHAC-RRANVGP-----ETNVMIMG-SGPIGLVTLLAARAFG-APRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGR 239 (249)
Q Consensus 168 ~~~l-~~~~~~~-----g~~vlI~G-~g~vG~~ai~la~~~G-~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~ 239 (249)
|.++ +.....+ +++++|+| +|++|++++++++.+| + .++++++++++.++++++|++++++... ++.+
T Consensus 133 ~~~l~~~~~~~~~~~~~g~~vlV~g~~g~vg~~~~~~a~~~G~~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~ 208 (336)
T cd08252 133 WEALFDRLGISEDAENEGKTLLIIGGAGGVGSIAIQLAKQLTGL-TVIATASRPESIAWVKELGADHVINHHQ---DLAE 208 (336)
T ss_pred HHHHHHhcCCCCCcCCCCCEEEEEcCCchHHHHHHHHHHHcCCc-EEEEEcCChhhHHHHHhcCCcEEEeCCc---cHHH
Confidence 8776 5566776 99999998 6999999999999999 7 7899988999999999999999987652 4444
Q ss_pred HHH
Q 025712 240 YKM 242 (249)
Q Consensus 240 ~~~ 242 (249)
.+.
T Consensus 209 ~i~ 211 (336)
T cd08252 209 QLE 211 (336)
T ss_pred HHH
Confidence 443
No 109
>cd08271 MDR5 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.92 E-value=3.6e-23 Score=178.54 Aligned_cols=199 Identities=26% Similarity=0.328 Sum_probs=165.6
Q ss_pred ceEEEEecCC---CeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCC
Q 025712 15 NMAAWLLGIK---TLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKS 91 (249)
Q Consensus 15 ~~~~~~~~~~---~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~ 91 (249)
|+++++.+|+ .+++++.+.|++.+++|+||+.++++|+.|+..+.+.... ...|.++|+|++|+|+.+|++++.
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~---~~~~~~~g~e~~G~v~~~G~~~~~ 77 (325)
T cd08271 1 MKAWVLPKPGAALQLTLEEIEIPGPGAGEVLVKVHAAGLNPVDWKVIAWGPPA---WSYPHVPGVDGAGVVVAVGAKVTG 77 (325)
T ss_pred CeeEEEccCCCcceeEEeccCCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCC---CCCCcccccceEEEEEEeCCCCCc
Confidence 5778888888 8999999999999999999999999999998877654311 123678999999999999999999
Q ss_pred CCCCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhcccc-chHHHHHH
Q 025712 92 LEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHA 170 (249)
Q Consensus 92 ~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-~~~~a~~~ 170 (249)
+++||+|++.+. ....|+|++|+.++.+.++++|+++++.+++.+. ...+++.+
T Consensus 78 ~~~Gd~V~~~~~-------------------------~~~~~~~~s~~~~~~~~~~~ip~~~~~~~~a~~~~~~~~a~~~ 132 (325)
T cd08271 78 WKVGDRVAYHAS-------------------------LARGGSFAEYTVVDARAVLPLPDSLSFEEAAALPCAGLTAYQA 132 (325)
T ss_pred CCCCCEEEeccC-------------------------CCCCccceeEEEeCHHHeEECCCCCCHHHHHhhhhhHHHHHHH
Confidence 999999987521 1136899999999999999999999998887654 67788888
Q ss_pred H-HHcCCCCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCCCcccHHHHHHHHH
Q 025712 171 C-RRANVGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGRYKMQWV 245 (249)
Q Consensus 171 l-~~~~~~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~ 245 (249)
+ +...+.+|++++|+| .|++|++++++++..|+ .++.+. ++++.+.++++|++.+++... .++.+.+.+++
T Consensus 133 ~~~~~~~~~g~~vlI~g~~~~ig~~~~~~a~~~g~-~v~~~~-~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~ 205 (325)
T cd08271 133 LFKKLRIEAGRTILITGGAGGVGSFAVQLAKRAGL-RVITTC-SKRNFEYVKSLGADHVIDYND--EDVCERIKEIT 205 (325)
T ss_pred HHHhcCCCCCCEEEEECCccHHHHHHHHHHHHcCC-EEEEEE-cHHHHHHHHHcCCcEEecCCC--ccHHHHHHHHc
Confidence 7 447889999999998 48999999999999999 677665 678888899999998887654 56666666543
No 110
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=99.92 E-value=2.9e-23 Score=179.97 Aligned_cols=187 Identities=17% Similarity=0.095 Sum_probs=151.5
Q ss_pred CCCeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCCCCCCCeEEEcc
Q 025712 23 IKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEP 102 (249)
Q Consensus 23 ~~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~ 102 (249)
++.+++++++.|.+.+++|+||+.++++|+.|.....+......+...+.++|+|++|+|+++|++ .+++||+|+.+
T Consensus 17 ~~~~~~~~~~~p~~~~~~v~Vkv~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~~G~~--~~~~Gd~V~~~- 93 (329)
T cd05288 17 PDDFELVEVPLPELKDGEVLVRTLYLSVDPYMRGWMSDAKSYSPPVQLGEPMRGGGVGEVVESRSP--DFKVGDLVSGF- 93 (329)
T ss_pred ccceeEEeccCCCCCCCeEEEEEEEEecCHHHhhhhccCcccCCCccCCCcccCceEEEEEecCCC--CCCCCCEEecc-
Confidence 357999999999999999999999999999887655442111111223567899999999999964 79999999743
Q ss_pred CcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecC-CceEECCCCCC--hhhh-c-cccchHHHHHHHH-HcCC
Q 025712 103 GISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPA-KLCYKLPDNVS--LEEG-A-MCEPLSVGVHACR-RANV 176 (249)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~ip~~~~--~~~a-a-~~~~~~~a~~~l~-~~~~ 176 (249)
++|++|+.++. +.++++|++++ +..+ + +...+.++|+++. ...+
T Consensus 94 ------------------------------~~~~~~~~v~~~~~~~~lP~~~~~~~~~~~~~l~~~~~ta~~~l~~~~~~ 143 (329)
T cd05288 94 ------------------------------LGWQEYAVVDGASGLRKLDPSLGLPLSAYLGVLGMTGLTAYFGLTEIGKP 143 (329)
T ss_pred ------------------------------cceEEEEEecchhhcEECCcccCCCHHHHHHhcccHHHHHHHHHHhccCC
Confidence 58999999999 99999999985 3333 3 3446778998874 4678
Q ss_pred CCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHH-cCCCEEecCCCCcccHHHHHHHHH
Q 025712 177 GPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN-LGADETAKVSTDIEMWGRYKMQWV 245 (249)
Q Consensus 177 ~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~-~ga~~vi~~~~~~~~~~~~~~~~~ 245 (249)
.++++++|+| +|++|++++++++..|+ .++++++++++.+.+++ +|+++++++++ .++.+++.+++
T Consensus 144 ~~~~~vlI~g~~g~ig~~~~~~a~~~G~-~vi~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~v~~~~ 211 (329)
T cd05288 144 KPGETVVVSAAAGAVGSVVGQIAKLLGA-RVVGIAGSDEKCRWLVEELGFDAAINYKT--PDLAEALKEAA 211 (329)
T ss_pred CCCCEEEEecCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhhcCCceEEecCC--hhHHHHHHHhc
Confidence 8999999998 79999999999999999 78888889999999988 99999998775 56777766553
No 111
>cd08251 polyketide_synthase polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde a
Probab=99.92 E-value=2.6e-23 Score=177.36 Aligned_cols=182 Identities=24% Similarity=0.380 Sum_probs=157.0
Q ss_pred CCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCCCCCCCeEEEccCcCCCCCccc
Q 025712 33 LPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLC 112 (249)
Q Consensus 33 ~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~ 112 (249)
.|.+.+++++||+.++++|+.|+..+.+.+.. ...+|.++|+|++|+|+++|++++++++||+|+++..
T Consensus 2 ~p~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~--~~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~~--------- 70 (303)
T cd08251 2 VAPPGPGEVRIQVRAFSLNFGDLLCVRGLYPT--MPPYPFTPGFEASGVVRAVGPHVTRLAVGDEVIAGTG--------- 70 (303)
T ss_pred CCCCCCCEEEEEEEEeecChHHHHHHCCCCCC--CCCCCCCcCceeeEEEEEECCCCCCCCCCCEEEEecC---------
Confidence 57789999999999999999999888765421 2356889999999999999999999999999987521
Q ss_pred cCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhcccc-chHHHHHHHHHcCCCCCCeEEEEc-CChH
Q 025712 113 KAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHACRRANVGPETNVMIMG-SGPI 190 (249)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-~~~~a~~~l~~~~~~~g~~vlI~G-~g~v 190 (249)
...|+|++|+.++.+.++++|+++++.+++.+. ...++|.+++...+++|++++|+| +|++
T Consensus 71 -----------------~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~g~~vli~~~~~~~ 133 (303)
T cd08251 71 -----------------ESMGGHATLVTVPEDQVVRKPASLSFEEACALPVVFLTVIDAFARAGLAKGEHILIQTATGGT 133 (303)
T ss_pred -----------------CCCcceeeEEEccHHHeEECCCCCCHHHHHHhHHHHHHHHHHHHhcCCCCCCEEEEecCCcHH
Confidence 146999999999999999999999999888665 577889888888899999999996 7999
Q ss_pred HHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCCCcccHHHHHHHHH
Q 025712 191 GLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGRYKMQWV 245 (249)
Q Consensus 191 G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~ 245 (249)
|++++|+++++|+ .++++.+++++.+.++++|++++++... .++.+.+.+++
T Consensus 134 g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~i~~~~ 185 (303)
T cd08251 134 GLMAVQLARLKGA-EIYATASSDDKLEYLKQLGVPHVINYVE--EDFEEEIMRLT 185 (303)
T ss_pred HHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHcCCCEEEeCCC--ccHHHHHHHHc
Confidence 9999999999999 7888988999999999999999998765 56777776654
No 112
>cd08272 MDR6 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.92 E-value=5.6e-23 Score=177.12 Aligned_cols=201 Identities=29% Similarity=0.354 Sum_probs=164.5
Q ss_pred ceEEEEecCC---CeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCC
Q 025712 15 NMAAWLLGIK---TLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKS 91 (249)
Q Consensus 15 ~~~~~~~~~~---~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~ 91 (249)
|+++++.+++ .+++++.+.|.+.+++|+|++.++++|+.|.....+... .....|.++|+|++|+|+.+|+++..
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~--~~~~~~~~~g~e~~G~v~~~G~~~~~ 78 (326)
T cd08272 1 MKALVLESFGGPEVFELREVPRPQPGPGQVLVRVHASGVNPLDTKIRRGGAA--ARPPLPAILGCDVAGVVEAVGEGVTR 78 (326)
T ss_pred CeEEEEccCCCchheEEeecCCCCCCCCeEEEEEEEEecCHHHHHHhCCCCC--CCCCCCcccccceeEEEEEeCCCCCC
Confidence 5778887654 488888888889999999999999999999887766432 11335788999999999999999999
Q ss_pred CCCCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhcccc-chHHHHHH
Q 025712 92 LEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHA 170 (249)
Q Consensus 92 ~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-~~~~a~~~ 170 (249)
+++||+|..+.. +.....|+|++|+.++...++++|+++++..++.+. ...+++++
T Consensus 79 ~~~Gd~V~~~~~-----------------------~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~ 135 (326)
T cd08272 79 FRVGDEVYGCAG-----------------------GLGGLQGSLAEYAVVDARLLALKPANLSMREAAALPLVGITAWEG 135 (326)
T ss_pred CCCCCEEEEccC-----------------------CcCCCCCceeEEEEecHHHcccCCCCCCHHHHHHhHHHHHHHHHH
Confidence 999999986520 000136899999999999999999999998887665 56788877
Q ss_pred H-HHcCCCCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCCCcccHHHHHHHHH
Q 025712 171 C-RRANVGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGRYKMQWV 245 (249)
Q Consensus 171 l-~~~~~~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~ 245 (249)
+ +..++.++++++|+| +|.+|++++++++.+|+ .++.++++ ++.++++++|++.+++... + +.+.+.+++
T Consensus 136 l~~~~~~~~~~~vli~g~~~~~g~~~~~~a~~~g~-~v~~~~~~-~~~~~~~~~g~~~~~~~~~--~-~~~~~~~~~ 207 (326)
T cd08272 136 LVDRAAVQAGQTVLIHGGAGGVGHVAVQLAKAAGA-RVYATASS-EKAAFARSLGADPIIYYRE--T-VVEYVAEHT 207 (326)
T ss_pred HHHhcCCCCCCEEEEEcCCCcHHHHHHHHHHHcCC-EEEEEech-HHHHHHHHcCCCEEEecch--h-HHHHHHHhc
Confidence 6 568899999999998 79999999999999999 68888777 8999999999998887654 4 666666544
No 113
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=99.91 E-value=1.6e-22 Score=173.31 Aligned_cols=187 Identities=30% Similarity=0.368 Sum_probs=158.9
Q ss_pred CCeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCCCCCCCeEEEccC
Q 025712 24 KTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPG 103 (249)
Q Consensus 24 ~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~ 103 (249)
..+.+.+.+.+.+.++||+|+|.++++|+.|+....+.+. ..+|.++|+|++|+|+.+|++++.+++||+|+++.
T Consensus 12 ~~~~~~~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~~~~~----~~~~~~~g~e~~G~v~~~g~~~~~~~~G~~V~~~~- 86 (320)
T cd05286 12 EVLEYEDVPVPEPGPGEVLVRNTAIGVNFIDTYFRSGLYP----LPLPFVLGVEGAGVVEAVGPGVTGFKVGDRVAYAG- 86 (320)
T ss_pred cceEEeecCCCCCCCCEEEEEEEEeecCHHHHHHhcCCCC----CCCCccCCcceeEEEEEECCCCCCCCCCCEEEEec-
Confidence 3577778887788999999999999999999987766432 24577899999999999999999999999998651
Q ss_pred cCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhcccc-chHHHHHHH-HHcCCCCCCe
Q 025712 104 ISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHAC-RRANVGPETN 181 (249)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-~~~~a~~~l-~~~~~~~g~~ 181 (249)
..|+|++++.++.+.++++|+++++.+++.+. ...+++.++ +...+.+|++
T Consensus 87 ---------------------------~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~g~~ 139 (320)
T cd05286 87 ---------------------------PPGAYAEYRVVPASRLVKLPDGISDETAAALLLQGLTAHYLLRETYPVKPGDT 139 (320)
T ss_pred ---------------------------CCCceeEEEEecHHHceeCCCCCCHHHHhhccchHHHHHHHHHHhcCCCCCCE
Confidence 25899999999999999999999988887554 566788777 4578899999
Q ss_pred EEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCCCcccHHHHHHHHH
Q 025712 182 VMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGRYKMQWV 245 (249)
Q Consensus 182 vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~ 245 (249)
++|+| +|++|++++++++.+|+ .+++++.++++.+.++++|++++++... .++.+.+.+++
T Consensus 140 vlI~g~~g~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~ 201 (320)
T cd05286 140 VLVHAAAGGVGLLLTQWAKALGA-TVIGTVSSEEKAELARAAGADHVINYRD--EDFVERVREIT 201 (320)
T ss_pred EEEEcCCchHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHCCCCEEEeCCc--hhHHHHHHHHc
Confidence 99998 69999999999999999 7888888999999999999999887654 56777776654
No 114
>cd08247 AST1_like AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast. This group contains members identified in targeting of yeast membrane proteins ATPase. AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast, identified as a multicopy suppressor of pma1 mutants which cause temperature sensitive growth arrest due to the inability of ATPase to target to the cell surface. This family is homologous to the medium chain family of dehydrogenases and reductases. Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-termi
Probab=99.91 E-value=2.1e-22 Score=176.57 Aligned_cols=191 Identities=23% Similarity=0.325 Sum_probs=148.6
Q ss_pred eEEEEecCC-CeEEEEecCCCC---CCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCC-
Q 025712 16 MAAWLLGIK-TLKIQPYHLPTL---GPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVK- 90 (249)
Q Consensus 16 ~~~~~~~~~-~l~~~~~~~p~~---~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~- 90 (249)
+++++.+++ .+++++++.|.| .+++|+||+.++++|+.|...+.+.. ......|.++|+|++|+|+++|++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~v~I~v~~~~~~~~d~~~~~~~~--~~~~~~~~~~g~e~~G~V~~vG~~v~~ 79 (352)
T cd08247 2 KALTFKNNTSPLTITTIKLPLPNCYKDNEIVVKVHAAALNPVDLKLYNSYT--FHFKVKEKGLGRDYSGVIVKVGSNVAS 79 (352)
T ss_pred ceEEEecCCCcceeeccCCCCCCCCCCCeEEEEEEEEecChHhHHHhcccc--cccccCCCccCceeEEEEEEeCccccc
Confidence 355666553 566666666554 99999999999999999987764311 11112377899999999999999998
Q ss_pred CCCCCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCC----ceEECCCCCChhhhcccc-chH
Q 025712 91 SLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAK----LCYKLPDNVSLEEGAMCE-PLS 165 (249)
Q Consensus 91 ~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~ip~~~~~~~aa~~~-~~~ 165 (249)
.+++||+|+++.... ....|+|++|+.++.. .++++|+++++.+++.+. ...
T Consensus 80 ~~~~Gd~V~~~~~~~-----------------------~~~~g~~~~~~~v~~~~~~~~~~~lP~~l~~~~aa~~~~~~~ 136 (352)
T cd08247 80 EWKVGDEVCGIYPHP-----------------------YGGQGTLSQYLLVDPKKDKKSITRKPENISLEEAAAWPLVLG 136 (352)
T ss_pred CCCCCCEEEEeecCC-----------------------CCCCceeeEEEEEccccccceeEECCCCCCHHHHHHhHHHHH
Confidence 899999998753210 0136899999999987 789999999999988765 466
Q ss_pred HHHHHHHHc--CCCCCCeEEEEc-CChHHHHHHHHHHHcCC-CeEEEEeCChhHHHHHHHcCCCEEecCCC
Q 025712 166 VGVHACRRA--NVGPETNVMIMG-SGPIGLVTLLAARAFGA-PRIIITDVDVQRLSIARNLGADETAKVST 232 (249)
Q Consensus 166 ~a~~~l~~~--~~~~g~~vlI~G-~g~vG~~ai~la~~~G~-~~vi~~~~~~~~~~~~~~~ga~~vi~~~~ 232 (249)
++|+++... .+++|++++|+| +|++|++++++|+..|. +.++.+. ++++.+.++++|++++++.+.
T Consensus 137 ta~~~l~~~~~~~~~g~~vlI~ga~~~vg~~~~~~a~~~~~~~~v~~~~-~~~~~~~~~~~g~~~~i~~~~ 206 (352)
T cd08247 137 TAYQILEDLGQKLGPDSKVLVLGGSTSVGRFAIQLAKNHYNIGTVVGTC-SSRSAELNKKLGADHFIDYDA 206 (352)
T ss_pred HHHHHHHHhhhccCCCCeEEEECCCchHHHHHHHHHHhcCCcceEEEEe-ChhHHHHHHHhCCCEEEecCC
Confidence 888888554 689999999998 57999999999999854 3567775 455566889999999998765
No 115
>cd08273 MDR8 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.91 E-value=1.4e-22 Score=175.78 Aligned_cols=183 Identities=26% Similarity=0.299 Sum_probs=154.5
Q ss_pred eEEEEec---CCCeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCCC
Q 025712 16 MAAWLLG---IKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSL 92 (249)
Q Consensus 16 ~~~~~~~---~~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~ 92 (249)
+++.+.. +..+++++.+.|.|.++||+|++.++++|+.|+..+.+..... ..+|.++|+|++|+|+.+|++++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~--~~~~~~~g~e~~G~v~~vG~~v~~~ 79 (331)
T cd08273 2 REVVVTRRGGPEVLKVVEADLPEPAAGEVVVKVEASGVSFADVQMRRGLYPDQ--PPLPFTPGYDLVGRVDALGSGVTGF 79 (331)
T ss_pred eeEEEccCCCcccEEEeccCCCCCCCCeEEEEEEEEecCHHHHHHhCCCCCCC--CCCCcccccceEEEEEEeCCCCccC
Confidence 5566664 3578999999999999999999999999999998877653211 2468899999999999999999999
Q ss_pred CCCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhcccc-chHHHHHHH
Q 025712 93 EVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHAC 171 (249)
Q Consensus 93 ~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-~~~~a~~~l 171 (249)
++||+|..++ ..|+|++|+.++.+.++++|+++++.+++.+. ...++|.++
T Consensus 80 ~~Gd~V~~~~----------------------------~~g~~~~~~~~~~~~~~~~p~~~~~~~a~~~~~~~~ta~~~l 131 (331)
T cd08273 80 EVGDRVAALT----------------------------RVGGNAEYINLDAKYLVPVPEGVDAAEAVCLVLNYVTAYQML 131 (331)
T ss_pred CCCCEEEEeC----------------------------CCcceeeEEEechHHeEECCCCCCHHHHHhhhhHHHHHHHHH
Confidence 9999998751 24899999999999999999999998887555 677889888
Q ss_pred HH-cCCCCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCC
Q 025712 172 RR-ANVGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVS 231 (249)
Q Consensus 172 ~~-~~~~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~ 231 (249)
.. ..+.++++++|+| .|++|++++++++.+|+ .++.+.. +++.++++++|+.. ++.+
T Consensus 132 ~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~g~-~v~~~~~-~~~~~~~~~~g~~~-~~~~ 190 (331)
T cd08273 132 HRAAKVLTGQRVLIHGASGGVGQALLELALLAGA-EVYGTAS-ERNHAALRELGATP-IDYR 190 (331)
T ss_pred HHhcCCCCCCEEEEECCCcHHHHHHHHHHHHcCC-EEEEEeC-HHHHHHHHHcCCeE-EcCC
Confidence 44 7899999999998 59999999999999999 7888876 88999999999754 3443
No 116
>cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.90 E-value=4.9e-22 Score=171.21 Aligned_cols=203 Identities=27% Similarity=0.346 Sum_probs=165.0
Q ss_pred ceEEEEec---CCCeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCC
Q 025712 15 NMAAWLLG---IKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKS 91 (249)
Q Consensus 15 ~~~~~~~~---~~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~ 91 (249)
|+++++.. +..+.+++.+.|.+++++++|+|.++++|+.|.....+.+... ...|.++|+|++|+|+.+|+++..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~~~~~~~--~~~~~~~g~e~~G~v~~~G~~~~~ 78 (328)
T cd08268 1 MRAVRFHQFGGPEVLRIEELPVPAPGAGEVLIRVEAIGLNRADAMFRRGAYIEP--PPLPARLGYEAAGVVEAVGAGVTG 78 (328)
T ss_pred CeEEEEeccCCcceeEEeecCCCCCCCCeEEEEEEEEecChHHhheeccccCCC--CCCCCCCCcceEEEEEeeCCCCCc
Confidence 35566664 3467888888888999999999999999999987766544221 345778999999999999999999
Q ss_pred CCCCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhcccc-chHHHHHH
Q 025712 92 LEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHA 170 (249)
Q Consensus 92 ~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-~~~~a~~~ 170 (249)
+++||+|+.++.. .....|++++|+.++.+.++++|+++++.+++.+. ...+++.+
T Consensus 79 ~~~Gd~V~~~~~~-----------------------~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~ 135 (328)
T cd08268 79 FAVGDRVSVIPAA-----------------------DLGQYGTYAEYALVPAAAVVKLPDGLSFVEAAALWMQYLTAYGA 135 (328)
T ss_pred CCCCCEEEecccc-----------------------ccCCCccceEEEEechHhcEeCCCCCCHHHHHHhhhHHHHHHHH
Confidence 9999999875310 01245899999999999999999999988877554 67788888
Q ss_pred HH-HcCCCCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCCCcccHHHHHHHHH
Q 025712 171 CR-RANVGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGRYKMQWV 245 (249)
Q Consensus 171 l~-~~~~~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~ 245 (249)
+. ...+.++++++|+| +|++|++++++++..|+ .++.++.+.++.+.++++|++.+++.+. .++.+.+.+++
T Consensus 136 ~~~~~~~~~~~~vli~g~~~~~g~~~~~~~~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~ 209 (328)
T cd08268 136 LVELAGLRPGDSVLITAASSSVGLAAIQIANAAGA-TVIATTRTSEKRDALLALGAAHVIVTDE--EDLVAEVLRIT 209 (328)
T ss_pred HHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHcCCCEEEecCC--ccHHHHHHHHh
Confidence 74 57888999999998 59999999999999999 7888888999999999999988887664 56666665544
No 117
>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases. Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et
Probab=99.90 E-value=3.6e-22 Score=170.66 Aligned_cols=191 Identities=29% Similarity=0.378 Sum_probs=155.3
Q ss_pred ceEEEEecCC---CeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCC
Q 025712 15 NMAAWLLGIK---TLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKS 91 (249)
Q Consensus 15 ~~~~~~~~~~---~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~ 91 (249)
|+++++..++ .+.+++.+.|.++++||+|++.++++|+.|+..+.+..........|.++|+|++|+|+.+|++++.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~g~e~~G~v~~~G~~~~~ 80 (309)
T cd05289 1 MKAVRIHEYGGPEVLELADVPTPEPGPGEVLVKVHAAGVNPVDLKIREGLLKAAFPLTLPLIPGHDVAGVVVAVGPGVTG 80 (309)
T ss_pred CceEEEcccCCccceeecccCCCCCCCCeEEEEEEEeeCCHHHHHHhcCCccccCCCCCCCccccceeEEEEeeCCCCCC
Confidence 4566776554 3667788888899999999999999999999887664321112345889999999999999999999
Q ss_pred CCCCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhcccc-chHHHHHH
Q 025712 92 LEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHA 170 (249)
Q Consensus 92 ~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-~~~~a~~~ 170 (249)
+++||+|+.++. ....|+|++|+.++...++++|+++++..++.+. ...+++.+
T Consensus 81 ~~~G~~V~~~~~-------------------------~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~ 135 (309)
T cd05289 81 FKVGDEVFGMTP-------------------------FTRGGAYAEYVVVPADELALKPANLSFEEAAALPLAGLTAWQA 135 (309)
T ss_pred CCCCCEEEEccC-------------------------CCCCCcceeEEEecHHHhccCCCCCCHHHHHhhhHHHHHHHHH
Confidence 999999987621 0136899999999999999999999988877665 46678888
Q ss_pred HHH-cCCCCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCC
Q 025712 171 CRR-ANVGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVST 232 (249)
Q Consensus 171 l~~-~~~~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~ 232 (249)
+.. ..+.++++++|+| +|.+|++++++++..|+ .++.+..++ +.+.++++|++++++...
T Consensus 136 ~~~~~~~~~~~~vlv~g~~g~~g~~~~~~a~~~g~-~v~~~~~~~-~~~~~~~~g~~~~~~~~~ 197 (309)
T cd05289 136 LFELGGLKAGQTVLIHGAAGGVGSFAVQLAKARGA-RVIATASAA-NADFLRSLGADEVIDYTK 197 (309)
T ss_pred HHhhcCCCCCCEEEEecCCchHHHHHHHHHHHcCC-EEEEEecch-hHHHHHHcCCCEEEeCCC
Confidence 755 4589999999998 59999999999999999 677776666 888889999888887654
No 118
>TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family. Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized.
Probab=99.90 E-value=1e-21 Score=168.98 Aligned_cols=198 Identities=25% Similarity=0.274 Sum_probs=161.6
Q ss_pred ceEEEEec---CCCeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCC
Q 025712 15 NMAAWLLG---IKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKS 91 (249)
Q Consensus 15 ~~~~~~~~---~~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~ 91 (249)
|+++.+.. +..+.+.+.+.+.+++++++|+|.++++|+.|.....+... .+..+|.++|+|++|+|+.+|+++..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~i~v~~~~~~~~d~~~~~~~~~--~~~~~~~~~g~e~~G~v~~vg~~~~~ 78 (325)
T TIGR02824 1 MKAIEITEPGGPEVLVLVEVPLPVPKAGEVLIRVAAAGVNRPDLLQRAGKYP--PPPGASDILGLEVAGEVVAVGEGVSR 78 (325)
T ss_pred CceEEEccCCCcccceEEeCCCCCCCCCEEEEEEEEEecCHHHHHHhcCCCC--CCCCCCCCccceeEEEEEEeCCCCCC
Confidence 34555554 34577778777778999999999999999999877765331 11345789999999999999999999
Q ss_pred CCCCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhcccc-chHHHHHH
Q 025712 92 LEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHA 170 (249)
Q Consensus 92 ~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-~~~~a~~~ 170 (249)
+++||+|+.+ ..+|+|++|+.++...++++|+++++.+++.+. ...+++.+
T Consensus 79 ~~~Gd~V~~~----------------------------~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~ta~~~ 130 (325)
T TIGR02824 79 WKVGDRVCAL----------------------------VAGGGYAEYVAVPAGQVLPVPEGLSLVEAAALPETFFTVWSN 130 (325)
T ss_pred CCCCCEEEEc----------------------------cCCCcceeEEEecHHHcEeCCCCCCHHHHHhhhHHHHHHHHH
Confidence 9999999864 134899999999999999999999988777554 67788877
Q ss_pred H-HHcCCCCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCCCcccHHHHHHHHH
Q 025712 171 C-RRANVGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGRYKMQWV 245 (249)
Q Consensus 171 l-~~~~~~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~ 245 (249)
+ +...+.++++++|+| +|++|++++++++..|+ .++++.+++++.+.++++|++.+++... .++.+.+.+.+
T Consensus 131 ~~~~~~~~~~~~vlv~g~~~~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~ 204 (325)
T TIGR02824 131 LFQRGGLKAGETVLIHGGASGIGTTAIQLAKAFGA-RVFTTAGSDEKCAACEALGADIAINYRE--EDFVEVVKAET 204 (325)
T ss_pred HHHhcCCCCCCEEEEEcCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCcEEEecCc--hhHHHHHHHHc
Confidence 6 568899999999998 69999999999999999 7888888899999999999988877554 55666665543
No 119
>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.90 E-value=3.8e-22 Score=171.66 Aligned_cols=179 Identities=30% Similarity=0.353 Sum_probs=150.3
Q ss_pred EEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCCCCCCCeEEEccCcCC
Q 025712 27 KIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISC 106 (249)
Q Consensus 27 ~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~ 106 (249)
++++.+.|+++++||+|++.++++|+.|.....+.+........|..+|+|++|+|.++|++++++++||+|+.+..
T Consensus 15 ~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~~--- 91 (319)
T cd08267 15 LEVEVPIPTPKPGEVLVKVHAASVNPVDWKLRRGPPKLLLGRPFPPIPGMDFAGEVVAVGSGVTRFKVGDEVFGRLP--- 91 (319)
T ss_pred ccccCCCCCCCCCEEEEEEEEeeCCHHHHHHHcCCCcccccCCCCCcccceeeEEEEEeCCCCCCCCCCCEEEEecc---
Confidence 88899999999999999999999999999887664311111235678999999999999999999999999987521
Q ss_pred CCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhcccc-chHHHHHHHHH-cCCCCCCeEEE
Q 025712 107 GHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHACRR-ANVGPETNVMI 184 (249)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-~~~~a~~~l~~-~~~~~g~~vlI 184 (249)
....|+|++|+.++.+.++++|+++++.+++.+. .+.++|+++.. ..+.++++++|
T Consensus 92 ----------------------~~~~g~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~g~~vli 149 (319)
T cd08267 92 ----------------------PKGGGALAEYVVAPESGLAKKPEGVSFEEAAALPVAGLTALQALRDAGKVKPGQRVLI 149 (319)
T ss_pred ----------------------CCCCceeeEEEEechhheEECCCCCCHHHHHhhhhHHHHHHHHHHHhcCCCCCCEEEE
Confidence 0135899999999999999999999988877655 67788988855 45899999999
Q ss_pred Ec-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCC
Q 025712 185 MG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVST 232 (249)
Q Consensus 185 ~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~ 232 (249)
+| +|++|++++++++.+|+ .++++.++ ++.+.++++|++++++...
T Consensus 150 ~g~~g~~g~~~~~la~~~g~-~v~~~~~~-~~~~~~~~~g~~~~~~~~~ 196 (319)
T cd08267 150 NGASGGVGTFAVQIAKALGA-HVTGVCST-RNAELVRSLGADEVIDYTT 196 (319)
T ss_pred EcCCcHHHHHHHHHHHHcCC-EEEEEeCH-HHHHHHHHcCCCEeecCCC
Confidence 98 59999999999999999 78887755 8889999999988887654
No 120
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=99.89 E-value=2e-21 Score=166.84 Aligned_cols=197 Identities=31% Similarity=0.468 Sum_probs=161.9
Q ss_pred ceEEEEec---CCCeEEEEecCCCCC-CCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCC
Q 025712 15 NMAAWLLG---IKTLKIQPYHLPTLG-PQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVK 90 (249)
Q Consensus 15 ~~~~~~~~---~~~l~~~~~~~p~~~-~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~ 90 (249)
|+++++.. +..+++.+.+ |.+. +++++|++.++++|+.|.....+.+.. ....|.++|+|++|+|+.+|+++.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~--~~~~~~~~g~e~~G~v~~~g~~~~ 77 (323)
T cd08241 1 MKAVVCKELGGPEDLVLEEVP-PEPGAPGEVRIRVEAAGVNFPDLLMIQGKYQV--KPPLPFVPGSEVAGVVEAVGEGVT 77 (323)
T ss_pred CeEEEEecCCCcceeEEecCC-CCCCCCCeEEEEEEEEecCHHHHHHHcCCCCC--CCCCCCcccceeEEEEEEeCCCCC
Confidence 46777763 3567787777 7665 599999999999999999877664311 123467899999999999999999
Q ss_pred CCCCCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhcccc-chHHHHH
Q 025712 91 SLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVH 169 (249)
Q Consensus 91 ~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-~~~~a~~ 169 (249)
.++.||+|+.++ ..|+|++++.++.+.++++|++++..+++.+. ...+++.
T Consensus 78 ~~~~G~~V~~~~----------------------------~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~a~~ 129 (323)
T cd08241 78 GFKVGDRVVALT----------------------------GQGGFAEEVVVPAAAVFPLPDGLSFEEAAALPVTYGTAYH 129 (323)
T ss_pred CCCCCCEEEEec----------------------------CCceeEEEEEcCHHHceeCCCCCCHHHHhhhhhHHHHHHH
Confidence 999999998751 25899999999999999999999888777444 6778888
Q ss_pred HHH-HcCCCCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCCCcccHHHHHHHHH
Q 025712 170 ACR-RANVGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGRYKMQWV 245 (249)
Q Consensus 170 ~l~-~~~~~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~ 245 (249)
++. ...+.++++++|+| +|++|++++++++..|+ .++.++.+.++.+.++++|++.+++... .++.+.+.+.+
T Consensus 130 ~~~~~~~~~~~~~vli~g~~~~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~i~~~~ 204 (323)
T cd08241 130 ALVRRARLQPGETVLVLGAAGGVGLAAVQLAKALGA-RVIAAASSEEKLALARALGADHVIDYRD--PDLRERVKALT 204 (323)
T ss_pred HHHHhcCCCCCCEEEEEcCCchHHHHHHHHHHHhCC-EEEEEeCCHHHHHHHHHcCCceeeecCC--ccHHHHHHHHc
Confidence 874 57889999999998 59999999999999999 6888888999999999999988887654 56777766654
No 121
>PF08240 ADH_N: Alcohol dehydrogenase GroES-like domain; InterPro: IPR013154 This is the catalytic domain of alcohol dehydrogenases (1.1.1.1 from EC). Many of them contain an inserted zinc binding domain. This domain has a GroES-like structure; a name derived from the superfamily of proteins with a GroES fold. Proteins with a GroES fold structure have a highly conserved hydrophobic core and a glycyl-aspartate dipeptide which is thought to maintain the fold [, ].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1YKF_D 2NVB_A 3FSR_D 1BXZ_B 3FTN_A 3MEQ_D 3UOG_B 3HZZ_B 4DVJ_A 1P0F_A ....
Probab=99.89 E-value=4.1e-23 Score=151.58 Aligned_cols=109 Identities=39% Similarity=0.745 Sum_probs=96.1
Q ss_pred CCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCCCCCCCeEEEccCcCCCCCccccCCCC
Q 025712 38 PQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSY 117 (249)
Q Consensus 38 ~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~ 117 (249)
|+||||||++++||++|+.++.+. .......|.++|||++|+|+++|+++++|++||+|+..+...|++|.+|..+..
T Consensus 1 P~eVlVkv~a~gic~~D~~~~~g~--~~~~~~~p~i~GhE~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~ 78 (109)
T PF08240_consen 1 PGEVLVKVRAAGICGSDLHIREGG--PPPPPKFPLILGHEGVGVVVAVGPGVTDFKVGDRVVVSPNIGCGECEYCLSGRP 78 (109)
T ss_dssp TTEEEEEEEEEEE-HHHHHHHTTS--SSSTSSSSEES-SEEEEEEEEESTTTTSSGTT-EEEEESEEETSSSHHHHTTTG
T ss_pred CCEEEEEEEEeeeCHHHHHHHhhc--cccCCCCCcccccceeeeeeeeccccccccccceeeeecccCccCchhhcCCcc
Confidence 689999999999999999999874 233368999999999999999999999999999999988889999999999999
Q ss_pred CCCcCccccCCCCCCCceeEEEEecCCceEEC
Q 025712 118 NLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKL 149 (249)
Q Consensus 118 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i 149 (249)
.+|+.....+.. .+|+|+||+.++.++++++
T Consensus 79 ~~c~~~~~~g~~-~~G~~aey~~v~~~~~~~v 109 (109)
T PF08240_consen 79 NLCPNPEVLGLG-LDGGFAEYVVVPARNLVPV 109 (109)
T ss_dssp GGTTTBEETTTS-STCSSBSEEEEEGGGEEEE
T ss_pred ccCCCCCEeEcC-CCCcccCeEEEehHHEEEC
Confidence 999988777654 7899999999999999874
No 122
>cd05195 enoyl_red enoyl reductase of polyketide synthase. Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase
Probab=99.89 E-value=2.4e-21 Score=163.74 Aligned_cols=170 Identities=28% Similarity=0.370 Sum_probs=147.0
Q ss_pred CcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCCCCCCCeEEEccCcCCCCCccccCCCCC
Q 025712 39 QDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYN 118 (249)
Q Consensus 39 ~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~ 118 (249)
+||+||+.++++|+.|+....+.. ..+|.++|+|++|+|+++|++++.+++||+|.++
T Consensus 1 ~~v~i~v~~~~~~~~d~~~~~g~~-----~~~~~~~g~e~~G~v~~~g~~~~~~~~Gd~V~~~----------------- 58 (293)
T cd05195 1 DEVEVEVKAAGLNFRDVLVALGLL-----PGDETPLGLECSGIVTRVGSGVTGLKVGDRVMGL----------------- 58 (293)
T ss_pred CceEEEEEEEecCHHHHHHHhCCC-----CCCCCccceeeeEEEEeecCCccCCCCCCEEEEE-----------------
Confidence 589999999999999998877643 2457899999999999999999999999999865
Q ss_pred CCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhcccc-chHHHHHHH-HHcCCCCCCeEEEEc-CChHHHHHH
Q 025712 119 LCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHAC-RRANVGPETNVMIMG-SGPIGLVTL 195 (249)
Q Consensus 119 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-~~~~a~~~l-~~~~~~~g~~vlI~G-~g~vG~~ai 195 (249)
..|+|++|+.++.+.++++|+++++.+++.+. ...+++.++ +...+++|++++|+| +|++|++++
T Consensus 59 ------------~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~g~~vlv~g~~g~~g~~~~ 126 (293)
T cd05195 59 ------------APGAFATHVRVDARLVVKIPDSLSFEEAATLPVAYLTAYYALVDLARLQKGESVLIHAAAGGVGQAAI 126 (293)
T ss_pred ------------ecCcccceEEechhheEeCCCCCCHHHHhhchHHHHHHHHHHHHHhccCCCCEEEEecCCCHHHHHHH
Confidence 35899999999999999999999998888664 577888887 457889999999997 799999999
Q ss_pred HHHHHcCCCeEEEEeCChhHHHHHHHcC--CCEEecCCCCcccHHHHHHHHH
Q 025712 196 LAARAFGAPRIIITDVDVQRLSIARNLG--ADETAKVSTDIEMWGRYKMQWV 245 (249)
Q Consensus 196 ~la~~~G~~~vi~~~~~~~~~~~~~~~g--a~~vi~~~~~~~~~~~~~~~~~ 245 (249)
++++.+|+ .++.+.+++++.++++++| ++++++... .++.+.+++++
T Consensus 127 ~~a~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 175 (293)
T cd05195 127 QLAQHLGA-EVFATVGSEEKREFLRELGGPVDHIFSSRD--LSFADGILRAT 175 (293)
T ss_pred HHHHHcCC-EEEEEeCCHHHHHHHHHhCCCcceEeecCc--hhHHHHHHHHh
Confidence 99999999 7888888999999999988 788887654 56777777654
No 123
>cd08275 MDR3 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.88 E-value=1.3e-20 Score=163.42 Aligned_cols=188 Identities=27% Similarity=0.374 Sum_probs=154.0
Q ss_pred CCeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCCCCCCCeEEEccC
Q 025712 24 KTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPG 103 (249)
Q Consensus 24 ~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~ 103 (249)
..+.+++.+.|.+.+++|+|++.++++|+.|.....+.+.. ....|.++|+|++|+|+.+|+++.++++||+|+++.
T Consensus 12 ~~~~~~~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~--~~~~~~~~g~e~~G~v~~~g~~~~~~~~G~~V~~~~- 88 (337)
T cd08275 12 DKLKVEKEALPEPSSGEVRVRVEACGLNFADLMARQGLYDS--APKPPFVPGFECAGTVEAVGEGVKDFKVGDRVMGLT- 88 (337)
T ss_pred cceEEEecCCCCCCCCEEEEEEEEEecCHHHHHHHCCCCCC--CCCCCCCCcceeEEEEEEECCCCcCCCCCCEEEEec-
Confidence 36788888888899999999999999999999887664321 134577899999999999999999999999998751
Q ss_pred cCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhcccc-chHHHHHHH-HHcCCCCCCe
Q 025712 104 ISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHAC-RRANVGPETN 181 (249)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-~~~~a~~~l-~~~~~~~g~~ 181 (249)
..|+|++|+.++.+.++++|+++++.+++.+. .+.++|+++ .....+++++
T Consensus 89 ---------------------------~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 141 (337)
T cd08275 89 ---------------------------RFGGYAEVVNVPADQVFPLPDGMSFEEAAAFPVNYLTAYYALFELGNLRPGQS 141 (337)
T ss_pred ---------------------------CCCeeeeEEEecHHHeEECCCCCCHHHHhhhhHHHHHHHHHHHHhhCCCCCCE
Confidence 34899999999999999999999988887655 677888887 4578899999
Q ss_pred EEEEc-CChHHHHHHHHHHHc-CCCeEEEEeCChhHHHHHHHcCCCEEecCCCCcccHHHHHHHHH
Q 025712 182 VMIMG-SGPIGLVTLLAARAF-GAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGRYKMQWV 245 (249)
Q Consensus 182 vlI~G-~g~vG~~ai~la~~~-G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~ 245 (249)
++|+| .|++|++++++++.. +. .++.. ..+++.++++++|++.+++... .++.+.+++++
T Consensus 142 vli~g~~g~~g~~~~~~a~~~~~~-~~~~~-~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~ 203 (337)
T cd08275 142 VLVHSAAGGVGLAAGQLCKTVPNV-TVVGT-ASASKHEALKENGVTHVIDYRT--QDYVEEVKKIS 203 (337)
T ss_pred EEEEcCcchHHHHHHHHHHHccCc-EEEEe-CCHHHHHHHHHcCCcEEeeCCC--CcHHHHHHHHh
Confidence 99998 599999999999999 43 23222 3456888889999998887665 67777776654
No 124
>smart00829 PKS_ER Enoylreductase. Enoylreductase in Polyketide synthases.
Probab=99.87 E-value=1e-20 Score=159.72 Aligned_cols=165 Identities=28% Similarity=0.388 Sum_probs=143.2
Q ss_pred EEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCCCCCCCeEEEccCcCCCCCccccCCCCCCCcC
Q 025712 43 VRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE 122 (249)
Q Consensus 43 V~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~ 122 (249)
||+.++++|+.|.....+.+ ..|.++|+|++|+|+++|++++.+++||+|..+
T Consensus 2 i~v~~~~i~~~d~~~~~g~~------~~~~~~g~e~~G~v~~~G~~~~~~~~Gd~V~~~--------------------- 54 (288)
T smart00829 2 VEVRAAGLNFRDVLIALGLL------PGEAVLGGECAGVVTRVGPGVTGLAVGDRVMGL--------------------- 54 (288)
T ss_pred eeEEEEecCHHHHHHhcCCC------CCCCCCCceeEEEEEeeCCCCcCCCCCCEEEEE---------------------
Confidence 78999999999998876642 236789999999999999999999999999865
Q ss_pred ccccCCCCCCCceeEEEEecCCceEECCCCCChhhhcccc-chHHHHHHH-HHcCCCCCCeEEEEc-CChHHHHHHHHHH
Q 025712 123 MRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHAC-RRANVGPETNVMIMG-SGPIGLVTLLAAR 199 (249)
Q Consensus 123 ~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-~~~~a~~~l-~~~~~~~g~~vlI~G-~g~vG~~ai~la~ 199 (249)
..|+|++|+.++.+.++++|+++++.+++.+. ...+++.++ +...+.+|++++|+| +|++|++++++++
T Consensus 55 --------~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~g~~vlv~g~~~~~g~~~~~~a~ 126 (288)
T smart00829 55 --------APGSFATYVRTDARLVVPIPDGLSFEEAATVPVVFLTAYYALVDLARLRPGESVLIHAAAGGVGQAAIQLAQ 126 (288)
T ss_pred --------cCCceeeEEEccHHHeEECCCCCCHHHHHhchHHHHHHHHHHHHHhCCCCCCEEEEecCCcHHHHHHHHHHH
Confidence 35899999999999999999999999888766 567888887 567889999999998 7999999999999
Q ss_pred HcCCCeEEEEeCChhHHHHHHHcCC--CEEecCCCCcccHHHHHHHHH
Q 025712 200 AFGAPRIIITDVDVQRLSIARNLGA--DETAKVSTDIEMWGRYKMQWV 245 (249)
Q Consensus 200 ~~G~~~vi~~~~~~~~~~~~~~~ga--~~vi~~~~~~~~~~~~~~~~~ 245 (249)
..|+ .++++++++++.++++++|+ +.++++.. +++.+.+.+++
T Consensus 127 ~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~~~~~~~ 171 (288)
T smart00829 127 HLGA-EVFATAGSPEKRDFLRELGIPDDHIFSSRD--LSFADEILRAT 171 (288)
T ss_pred HcCC-EEEEEeCCHHHHHHHHHcCCChhheeeCCC--ccHHHHHHHHh
Confidence 9999 78999889999999999998 78887664 56777766544
No 125
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=99.80 E-value=1.1e-18 Score=148.02 Aligned_cols=134 Identities=33% Similarity=0.432 Sum_probs=118.1
Q ss_pred cCCCCCceeccceEEEEEEecCCCCCCCCCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCc
Q 025712 66 FIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKL 145 (249)
Q Consensus 66 ~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 145 (249)
.+..+|.++|+|++|+|+++|++++.+++||+|+.+ +.|++|+.++.+.
T Consensus 16 ~~~~~p~v~g~e~~G~V~~vG~~v~~~~~Gd~V~~~-------------------------------~~~~~~~~v~~~~ 64 (277)
T cd08255 16 EKLPLPLPPGYSSVGRVVEVGSGVTGFKPGDRVFCF-------------------------------GPHAERVVVPANL 64 (277)
T ss_pred ccCcCCcccCcceeEEEEEeCCCCCCCCCCCEEEec-------------------------------CCcceEEEcCHHH
Confidence 345688999999999999999999999999999854 4689999999999
Q ss_pred eEECCCCCChhhhccccchHHHHHHHHHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcC-C
Q 025712 146 CYKLPDNVSLEEGAMCEPLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLG-A 224 (249)
Q Consensus 146 ~~~ip~~~~~~~aa~~~~~~~a~~~l~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~g-a 224 (249)
++++|+++++.+++.+..+.++|+++...+++++++++|+|+|++|++++++|+.+|++.++++++++++.++++++| +
T Consensus 65 ~~~ip~~l~~~~aa~~~~~~ta~~~~~~~~~~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~g~~ 144 (277)
T cd08255 65 LVPLPDGLPPERAALTALAATALNGVRDAEPRLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEALGPA 144 (277)
T ss_pred eeECcCCCCHHHhHHHHHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHcCCC
Confidence 999999999888886666778898887888999999999999999999999999999944999999999999999998 4
Q ss_pred CEEecC
Q 025712 225 DETAKV 230 (249)
Q Consensus 225 ~~vi~~ 230 (249)
+++++.
T Consensus 145 ~~~~~~ 150 (277)
T cd08255 145 DPVAAD 150 (277)
T ss_pred cccccc
Confidence 555443
No 126
>KOG1196 consensus Predicted NAD-dependent oxidoreductase [General function prediction only]
Probab=99.72 E-value=1.1e-15 Score=126.73 Aligned_cols=177 Identities=14% Similarity=0.094 Sum_probs=134.4
Q ss_pred EecC-CCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceec----cceEEEEEEecCCCCCCCCCCeEEEccCc
Q 025712 30 PYHL-PTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIG----HECAGIIEEVGSEVKSLEVGDRVALEPGI 104 (249)
Q Consensus 30 ~~~~-p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G----~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~ 104 (249)
+++. .++++++||||..|.+..|.-...+....... ...|+.+| ..++|+|++. +-+++++||.|-..
T Consensus 28 ~~el~~~~~s~~vlvknlYLS~DPymR~rM~~~~~~~--y~~~~~~G~pi~g~GV~kVi~S--~~~~~~~GD~v~g~--- 100 (343)
T KOG1196|consen 28 TVELRVPLGSGEVLVKNLYLSCDPYMRIRMGKPDPSD--YAPPYEPGKPIDGFGVAKVIDS--GHPNYKKGDLVWGI--- 100 (343)
T ss_pred eecccCCCCCccEEeEeeeecCCHHHHhhccCCCccc--ccCcccCCcEecCCceEEEEec--CCCCCCcCceEEEe---
Confidence 4453 46799999999999999876654443322111 33444444 3678999984 66779999999743
Q ss_pred CCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCce--EECCC--CCC--hhhhccccchHHHHHHH-HHcCCC
Q 025712 105 SCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLC--YKLPD--NVS--LEEGAMCEPLSVGVHAC-RRANVG 177 (249)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--~~ip~--~~~--~~~aa~~~~~~~a~~~l-~~~~~~ 177 (249)
-+|.||.++++... ++++. +.+ ....++-++..|||..+ +....+
T Consensus 101 ----------------------------~gWeeysii~~~~~~~~ki~~~~~~pLs~ylg~lGm~glTAy~Gf~ei~~pk 152 (343)
T KOG1196|consen 101 ----------------------------VGWEEYSVITPNDLEHFKIQHPTDVPLSYYLGLLGMPGLTAYAGFYEICSPK 152 (343)
T ss_pred ----------------------------ccceEEEEecCcchhcccCCCCCccCHhhhhhccCCchhHHHHHHHHhcCCC
Confidence 38999998877533 34433 333 33444556888999988 568899
Q ss_pred CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHH-cCCCEEecCCCCcccHHHHHHH
Q 025712 178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN-LGADETAKVSTDIEMWGRYKMQ 243 (249)
Q Consensus 178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~-~ga~~vi~~~~~~~~~~~~~~~ 243 (249)
+|++++|-| +|++|+++.|+|+.+|. .||+...+++|.++++. +|.+..+||.++ ++..+++.+
T Consensus 153 ~geTv~VSaAsGAvGql~GQ~Ak~~Gc-~VVGsaGS~EKv~ll~~~~G~d~afNYK~e-~~~~~aL~r 218 (343)
T KOG1196|consen 153 KGETVFVSAASGAVGQLVGQFAKLMGC-YVVGSAGSKEKVDLLKTKFGFDDAFNYKEE-SDLSAALKR 218 (343)
T ss_pred CCCEEEEeeccchhHHHHHHHHHhcCC-EEEEecCChhhhhhhHhccCCccceeccCc-cCHHHHHHH
Confidence 999999997 79999999999999999 99999999999999975 799999999983 477777766
No 127
>KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism]
Probab=99.68 E-value=1.7e-16 Score=149.80 Aligned_cols=183 Identities=17% Similarity=0.169 Sum_probs=152.0
Q ss_pred CCeEEEEecCC---CCCCCcEEEEEeEEecccchHhhHhcccccccC----CCCCceeccceEEEEEEecCCCCCCCCCC
Q 025712 24 KTLKIQPYHLP---TLGPQDVKVRIKALGICGSDVHHFKTMRCANFI----VKKPMVIGHECAGIIEEVGSEVKSLEVGD 96 (249)
Q Consensus 24 ~~l~~~~~~~p---~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~----~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd 96 (249)
..|+|.+.|.. +..++.=+.-|-|+++|..|+.+..|+..++-. .....++|.|++|+ ..-|.
T Consensus 1427 sSlrWies~~~~a~~~~~~~e~CtVYYAplNFRDiMLasGkL~~DAiPG~~a~qdclLGmEFsGR----------d~~Gr 1496 (2376)
T KOG1202|consen 1427 SSLRWIESPLRHAQPTCPGLELCTVYYAPLNFRDIMLASGKLSPDAIPGDLASQDCLLGMEFSGR----------DASGR 1496 (2376)
T ss_pred cceeeeecchhhcCCCCCCCceeEEEeccccHHHHHHhcCCCCcccCCCccchhhheeceeeccc----------cCCCc
Confidence 36888888764 447777899999999999999999987754432 24566899999997 34699
Q ss_pred eEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhcccc-chHHHHHHH-HHc
Q 025712 97 RVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHAC-RRA 174 (249)
Q Consensus 97 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-~~~~a~~~l-~~~ 174 (249)
||+.+. ..-++++-+.++.+++|.+|.++..++|+..+ .+.++|+++ .+.
T Consensus 1497 RvM~mv----------------------------pAksLATt~l~~rd~lWevP~~WTleeAstVP~VYsTaYYALVvRG 1548 (2376)
T KOG1202|consen 1497 RVMGMV----------------------------PAKSLATTVLASRDFLWEVPSKWTLEEASTVPVVYSTAYYALVVRG 1548 (2376)
T ss_pred EEEEee----------------------------ehhhhhhhhhcchhhhhhCCcccchhhcccCceEeeeehhhhhhhc
Confidence 999752 34677888899999999999999999999998 588999998 779
Q ss_pred CCCCCCeEEEE-cCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHc----CCCEEecCCCCcccHHHHHHHHHHH
Q 025712 175 NVGPETNVMIM-GSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNL----GADETAKVSTDIEMWGRYKMQWVQA 247 (249)
Q Consensus 175 ~~~~g~~vlI~-G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~----ga~~vi~~~~~~~~~~~~~~~~~~~ 247 (249)
..++|+++||| |+|+||++||.+|.+.|. +|+.+..+++|++++.+. ..+++-| +.+.+|...++..|++
T Consensus 1549 ~mkkGekiLIHaGsGGVGQAAIaiALa~G~-~VFTTVGSaEKRefL~~rFPqLqe~~~~N--SRdtsFEq~vl~~T~G 1623 (2376)
T KOG1202|consen 1549 QMKKGEKILIHAGSGGVGQAAIAIALAHGC-TVFTTVGSAEKREFLLKRFPQLQETNFAN--SRDTSFEQHVLWHTKG 1623 (2376)
T ss_pred cccCCcEEEEecCCCchhHHHHHHHHHcCC-EEEEecCcHHHHHHHHHhchhhhhhcccc--cccccHHHHHHHHhcC
Confidence 99999999999 599999999999999999 899999999999999763 3445443 4458999999887764
No 128
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=98.55 E-value=2.3e-07 Score=69.55 Aligned_cols=55 Identities=29% Similarity=0.464 Sum_probs=50.9
Q ss_pred hHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCCCcccHHHHHHHHHH
Q 025712 189 PIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGRYKMQWVQ 246 (249)
Q Consensus 189 ~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~~ 246 (249)
++|++++|+|+.+|+ +|++++++++|+++++++|+++++++++ .++.+++++++.
T Consensus 1 ~vG~~a~q~ak~~G~-~vi~~~~~~~k~~~~~~~Ga~~~~~~~~--~~~~~~i~~~~~ 55 (130)
T PF00107_consen 1 GVGLMAIQLAKAMGA-KVIATDRSEEKLELAKELGADHVIDYSD--DDFVEQIRELTG 55 (130)
T ss_dssp HHHHHHHHHHHHTTS-EEEEEESSHHHHHHHHHTTESEEEETTT--SSHHHHHHHHTT
T ss_pred ChHHHHHHHHHHcCC-EEEEEECCHHHHHHHHhhcccccccccc--cccccccccccc
Confidence 589999999999996 9999999999999999999999999887 679999998875
No 129
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=98.09 E-value=1.2e-05 Score=73.74 Aligned_cols=55 Identities=24% Similarity=0.350 Sum_probs=50.5
Q ss_pred CCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEE-ecCC
Q 025712 176 VGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADET-AKVS 231 (249)
Q Consensus 176 ~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~v-i~~~ 231 (249)
..++++|+|+|+|.+|+++++.|+.+|+ .|+++|.++++++.++++|++.+ +|..
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lGA-~V~a~D~~~~rle~aeslGA~~v~i~~~ 217 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGSLGA-IVRAFDTRPEVAEQVESMGAEFLELDFE 217 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCeEEEeccc
Confidence 4689999999999999999999999999 79999999999999999999954 6654
No 130
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=97.34 E-value=0.00025 Score=61.40 Aligned_cols=81 Identities=23% Similarity=0.334 Sum_probs=65.4
Q ss_pred CceEECCCCCChhhhccccchHHHHHHHHHcCC----CCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHH-HH
Q 025712 144 KLCYKLPDNVSLEEGAMCEPLSVGVHACRRANV----GPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRL-SI 218 (249)
Q Consensus 144 ~~~~~ip~~~~~~~aa~~~~~~~a~~~l~~~~~----~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~-~~ 218 (249)
+..+++|+.+..+.++...+..+++.+++.+.. -++.+|+|+|+|.+|..+++.++..|+..+++++++.++. ++
T Consensus 139 ~~a~~~~k~vr~et~i~~~~~sv~~~Av~~a~~~~~~l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~l 218 (311)
T cd05213 139 QKAIKVGKRVRTETGISRGAVSISSAAVELAEKIFGNLKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEEL 218 (311)
T ss_pred HHHHHHHHHHhhhcCCCCCCcCHHHHHHHHHHHHhCCccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHH
Confidence 455678888888888887787788877754332 4799999999999999999999988877888899888775 56
Q ss_pred HHHcCC
Q 025712 219 ARNLGA 224 (249)
Q Consensus 219 ~~~~ga 224 (249)
.+++|+
T Consensus 219 a~~~g~ 224 (311)
T cd05213 219 AKELGG 224 (311)
T ss_pred HHHcCC
Confidence 677876
No 131
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=97.29 E-value=7.8e-06 Score=73.59 Aligned_cols=133 Identities=19% Similarity=0.245 Sum_probs=86.5
Q ss_pred eeccceEEEEEEecCCCCCCCCCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCC
Q 025712 73 VIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDN 152 (249)
Q Consensus 73 ~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~ 152 (249)
.-|.|+++.+.+++.++++ .|++.+.. ||+|.+| +..|...+..|. ..++.|++++.++. .+..
T Consensus 89 ~~~~~a~~hl~~Va~GldS-----~V~GE~qI-~gQvk~a----~~~a~~~~~~g~-~l~~lf~~a~~~~k-~vr~---- 152 (417)
T TIGR01035 89 LTGESAVEHLFRVASGLDS-----MVVGETQI-LGQVKNA----YKVAQEEKTVGK-VLERLFQKAFSVGK-RVRT---- 152 (417)
T ss_pred cCchHHHHHHHHHHhhhhh-----hhcCChHH-HHHHHHH----HHHHHHcCCchH-HHHHHHHHHHHHhh-hhhh----
Confidence 4788889999999998876 55555555 8889888 333443333332 24577888777665 2221
Q ss_pred CChhhhccccchHHHHHHH----HHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHH-HHHHcCC
Q 025712 153 VSLEEGAMCEPLSVGVHAC----RRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLS-IARNLGA 224 (249)
Q Consensus 153 ~~~~~aa~~~~~~~a~~~l----~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~-~~~~~ga 224 (249)
+....-.....++.++ ......++++++|+|+|.+|.++++.++..|+..+++++++.++.+ +++++|.
T Consensus 153 ---~t~i~~~~vSv~~~Av~la~~~~~~l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~ 226 (417)
T TIGR01035 153 ---ETDISAGAVSISSAAVELAERIFGSLKGKKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDLAKELGG 226 (417)
T ss_pred ---hcCCCCCCcCHHHHHHHHHHHHhCCccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCC
Confidence 1000011122222222 3334467899999999999999999999999668999988888754 5555654
No 132
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=97.23 E-value=0.0022 Score=58.95 Aligned_cols=49 Identities=27% Similarity=0.426 Sum_probs=45.9
Q ss_pred CCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCE
Q 025712 177 GPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADE 226 (249)
Q Consensus 177 ~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~ 226 (249)
.++.+++|+|+|.+|++++++++.+|+ .|++++.+.++++.++++|++.
T Consensus 162 vp~akVlViGaG~iGl~Aa~~ak~lGA-~V~v~d~~~~rle~a~~lGa~~ 210 (511)
T TIGR00561 162 VPPAKVLVIGAGVAGLAAIGAANSLGA-IVRAFDTRPEVKEQVQSMGAEF 210 (511)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCeE
Confidence 467999999999999999999999999 6999999999999999999876
No 133
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=97.21 E-value=0.001 Score=59.63 Aligned_cols=50 Identities=26% Similarity=0.274 Sum_probs=45.6
Q ss_pred CCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCE
Q 025712 176 VGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADE 226 (249)
Q Consensus 176 ~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~ 226 (249)
.-+|++|+|.|.|.+|+.+++.++.+|+ +|++++.++.|.+.++++|++.
T Consensus 199 ~l~GktVvViG~G~IG~~va~~ak~~Ga-~ViV~d~d~~R~~~A~~~G~~~ 248 (413)
T cd00401 199 MIAGKVAVVAGYGDVGKGCAQSLRGQGA-RVIVTEVDPICALQAAMEGYEV 248 (413)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECChhhHHHHHhcCCEE
Confidence 4689999999999999999999999999 7899999999999999888743
No 134
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=96.87 E-value=0.0071 Score=50.65 Aligned_cols=83 Identities=24% Similarity=0.412 Sum_probs=55.9
Q ss_pred ceeEEEEecCCceEECCCCCChhhhccccchHHHHHHHHHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCCh
Q 025712 134 SLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDV 213 (249)
Q Consensus 134 ~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~a~~~l~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~ 213 (249)
+|.++.. +...++.+++++.+..+..-.+. .....+.. ...++++||-.|+|. |.+++.+++ .|+..++++|.++
T Consensus 78 ~~~~~~~-~~~~~i~i~p~~afgtg~h~tt~-~~l~~l~~-~~~~~~~VLDiGcGs-G~l~i~~~~-~g~~~v~giDis~ 152 (250)
T PRK00517 78 SWEDPPD-PDEINIELDPGMAFGTGTHPTTR-LCLEALEK-LVLPGKTVLDVGCGS-GILAIAAAK-LGAKKVLAVDIDP 152 (250)
T ss_pred CCcCCCC-CCeEEEEECCCCccCCCCCHHHH-HHHHHHHh-hcCCCCEEEEeCCcH-HHHHHHHHH-cCCCeEEEEECCH
Confidence 4444433 56777888888887766522221 12222322 256889999999887 888876555 6776799999999
Q ss_pred hHHHHHHH
Q 025712 214 QRLSIARN 221 (249)
Q Consensus 214 ~~~~~~~~ 221 (249)
...+.+++
T Consensus 153 ~~l~~A~~ 160 (250)
T PRK00517 153 QAVEAARE 160 (250)
T ss_pred HHHHHHHH
Confidence 88887754
No 135
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=96.75 E-value=0.003 Score=57.08 Aligned_cols=133 Identities=21% Similarity=0.314 Sum_probs=82.5
Q ss_pred eeccceEEEEEEecCCCCCCCCCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCC
Q 025712 73 VIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDN 152 (249)
Q Consensus 73 ~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~ 152 (249)
.-|+|+++-+.+++.++++.-.|..-+ ||+|... +..|...+..+. ...+.|++. +++|..
T Consensus 91 ~~g~ea~~hl~~V~~GldS~V~GE~qI------lgQvk~a----~~~a~~~g~~g~-~l~~lf~~a--------~~~~k~ 151 (423)
T PRK00045 91 HEGEEAVRHLFRVASGLDSMVLGEPQI------LGQVKDA----YALAQEAGTVGT-ILNRLFQKA--------FSVAKR 151 (423)
T ss_pred cCCHHHHHHHHHHHhhhhhhhcCChHH------HHHHHHH----HHHHHHcCCchH-HHHHHHHHH--------HHHHhh
Confidence 579999999999999987754554332 3444311 111111111110 122333332 233444
Q ss_pred CChhhhccccchHHHHHHHHHcC----CCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHH-HHHHcCC
Q 025712 153 VSLEEGAMCEPLSVGVHACRRAN----VGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLS-IARNLGA 224 (249)
Q Consensus 153 ~~~~~aa~~~~~~~a~~~l~~~~----~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~-~~~~~ga 224 (249)
+..+.+....+..+++.+++.+. -.++++++|+|+|.+|.++++.++..|+..+++++++.++.. +++++|.
T Consensus 152 v~~~t~i~~~~~Sv~~~Av~~a~~~~~~~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~ 228 (423)
T PRK00045 152 VRTETGIGAGAVSVASAAVELAKQIFGDLSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFGG 228 (423)
T ss_pred HhhhcCCCCCCcCHHHHHHHHHHHhhCCccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCC
Confidence 44444444446666777764432 267899999999999999999999999878888888888755 5566664
No 136
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=96.73 E-value=0.0074 Score=45.63 Aligned_cols=46 Identities=22% Similarity=0.289 Sum_probs=40.6
Q ss_pred CCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHH-Hc
Q 025712 177 GPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR-NL 222 (249)
Q Consensus 177 ~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~-~~ 222 (249)
-++++++|+|+|+.|.+++..+...|++.+..+.++.+|.+.+. ++
T Consensus 10 l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~ 56 (135)
T PF01488_consen 10 LKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEF 56 (135)
T ss_dssp GTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHH
T ss_pred cCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHc
Confidence 36899999999999999999999999988999999998877764 45
No 137
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=96.61 E-value=0.0055 Score=57.48 Aligned_cols=56 Identities=21% Similarity=0.339 Sum_probs=46.4
Q ss_pred CCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeC---------------------ChhHHHHHHHcCCCEEecCC
Q 025712 175 NVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDV---------------------DVQRLSIARNLGADETAKVS 231 (249)
Q Consensus 175 ~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~---------------------~~~~~~~~~~~ga~~vi~~~ 231 (249)
..++|++|+|+|+|..|+++++.++..|+ .|++++. .+.+++.++++|++..++..
T Consensus 133 ~~~~g~~V~VIGaGpaGL~aA~~l~~~G~-~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~~~~ 209 (564)
T PRK12771 133 APDTGKRVAVIGGGPAGLSAAYHLRRMGH-AVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRLGVR 209 (564)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEeCCE
Confidence 36789999999999999999999999999 6777874 24567788899998777643
No 138
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=96.56 E-value=0.0088 Score=46.96 Aligned_cols=49 Identities=29% Similarity=0.485 Sum_probs=41.4
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEE
Q 025712 178 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADET 227 (249)
Q Consensus 178 ~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~v 227 (249)
+..+++|+|+|.+|..|+.+++.+|+ +++..+...++.+..+..++..+
T Consensus 19 ~p~~vvv~G~G~vg~gA~~~~~~lGa-~v~~~d~~~~~~~~~~~~~~~~i 67 (168)
T PF01262_consen 19 PPAKVVVTGAGRVGQGAAEIAKGLGA-EVVVPDERPERLRQLESLGAYFI 67 (168)
T ss_dssp -T-EEEEESTSHHHHHHHHHHHHTT--EEEEEESSHHHHHHHHHTTTEES
T ss_pred CCeEEEEECCCHHHHHHHHHHhHCCC-EEEeccCCHHHHHhhhcccCceE
Confidence 34788999999999999999999999 89999999999999988887554
No 139
>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]
Probab=96.44 E-value=0.022 Score=47.07 Aligned_cols=67 Identities=21% Similarity=0.203 Sum_probs=49.5
Q ss_pred CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHH-HcCC----CEEecCCCCcccHHHHHHHHHH
Q 025712 178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR-NLGA----DETAKVSTDIEMWGRYKMQWVQ 246 (249)
Q Consensus 178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~-~~ga----~~vi~~~~~~~~~~~~~~~~~~ 246 (249)
+++.++|.| ++++|.+..+.....|+ +++.+.+..++++.+. +++. ...+|..+ .+++.+.+..+.+
T Consensus 5 ~~kv~lITGASSGiG~A~A~~l~~~G~-~vvl~aRR~drL~~la~~~~~~~~~~~~~DVtD-~~~~~~~i~~~~~ 77 (246)
T COG4221 5 KGKVALITGASSGIGEATARALAEAGA-KVVLAARREERLEALADEIGAGAALALALDVTD-RAAVEAAIEALPE 77 (246)
T ss_pred CCcEEEEecCcchHHHHHHHHHHHCCC-eEEEEeccHHHHHHHHHhhccCceEEEeeccCC-HHHHHHHHHHHHH
Confidence 457889998 68999999999999999 8999999999988885 4772 33444443 2355555554444
No 140
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=96.41 E-value=0.014 Score=52.49 Aligned_cols=55 Identities=33% Similarity=0.391 Sum_probs=43.3
Q ss_pred HHHHHHc-CCC-CCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcC
Q 025712 168 VHACRRA-NVG-PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLG 223 (249)
Q Consensus 168 ~~~l~~~-~~~-~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~g 223 (249)
|.++.+. ++. .|++++|.|.|.+|..+++.++.+|+ +|++++.++.+...+...|
T Consensus 199 ~~ai~rat~~~l~Gk~VlViG~G~IG~~vA~~lr~~Ga-~ViV~d~dp~ra~~A~~~G 255 (425)
T PRK05476 199 LDGIKRATNVLIAGKVVVVAGYGDVGKGCAQRLRGLGA-RVIVTEVDPICALQAAMDG 255 (425)
T ss_pred HHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCCchhhHHHHhcC
Confidence 4455443 444 89999999999999999999999999 7999988877765544444
No 141
>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]
Probab=96.40 E-value=0.027 Score=45.48 Aligned_cols=65 Identities=23% Similarity=0.366 Sum_probs=49.0
Q ss_pred CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCC---CEEecCCCCcccHHHHHHHHH
Q 025712 178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGA---DETAKVSTDIEMWGRYKMQWV 245 (249)
Q Consensus 178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga---~~vi~~~~~~~~~~~~~~~~~ 245 (249)
.|.+|||.| ++++|++..+-....|. +||++.+++++++..++... +.+.|..+ .+--+++.+|.
T Consensus 4 tgnTiLITGG~sGIGl~lak~f~elgN-~VIi~gR~e~~L~e~~~~~p~~~t~v~Dv~d--~~~~~~lvewL 72 (245)
T COG3967 4 TGNTILITGGASGIGLALAKRFLELGN-TVIICGRNEERLAEAKAENPEIHTEVCDVAD--RDSRRELVEWL 72 (245)
T ss_pred cCcEEEEeCCcchhhHHHHHHHHHhCC-EEEEecCcHHHHHHHHhcCcchheeeecccc--hhhHHHHHHHH
Confidence 478999996 89999999888888998 89999999999999987543 45555443 34333444443
No 142
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=96.29 E-value=0.017 Score=49.77 Aligned_cols=47 Identities=21% Similarity=0.415 Sum_probs=41.3
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCC
Q 025712 178 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGAD 225 (249)
Q Consensus 178 ~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~ 225 (249)
.+++++|+|.|.+|+.+++.++.+|+ +|.+++++.++.+.++++|++
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~Ga-~V~v~~r~~~~~~~~~~~G~~ 197 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKALGA-NVTVGARKSAHLARITEMGLS 197 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHcCCe
Confidence 68999999999999999999999999 899999998887777766643
No 143
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=96.21 E-value=0.023 Score=50.46 Aligned_cols=46 Identities=28% Similarity=0.516 Sum_probs=38.4
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHH-cCC
Q 025712 178 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN-LGA 224 (249)
Q Consensus 178 ~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~-~ga 224 (249)
++.+++|+|+|.+|+.+++.++.+|+ +|++++++.++.+.+.+ ++.
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa-~V~v~d~~~~~~~~l~~~~g~ 212 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGA-TVTILDINIDRLRQLDAEFGG 212 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHhcCc
Confidence 45669999999999999999999999 79999988888776643 444
No 144
>PRK05993 short chain dehydrogenase; Provisional
Probab=96.14 E-value=0.055 Score=45.74 Aligned_cols=49 Identities=20% Similarity=0.223 Sum_probs=40.8
Q ss_pred CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEE
Q 025712 178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADET 227 (249)
Q Consensus 178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~v 227 (249)
.+++++|+| +|++|.+.++.....|+ +|++++++.++.+.+.+.+++.+
T Consensus 3 ~~k~vlItGasggiG~~la~~l~~~G~-~Vi~~~r~~~~~~~l~~~~~~~~ 52 (277)
T PRK05993 3 MKRSILITGCSSGIGAYCARALQSDGW-RVFATCRKEEDVAALEAEGLEAF 52 (277)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHCCceEE
Confidence 467899998 69999999988888999 79999999888888877676543
No 145
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=96.04 E-value=0.066 Score=45.84 Aligned_cols=59 Identities=25% Similarity=0.382 Sum_probs=47.0
Q ss_pred HHcCCCCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEe--CChhHHHHHHHcCCCEEecCC
Q 025712 172 RRANVGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITD--VDVQRLSIARNLGADETAKVS 231 (249)
Q Consensus 172 ~~~~~~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~--~~~~~~~~~~~~ga~~vi~~~ 231 (249)
....+++|.+| |=+ +|..|.+...+|+..|++.++.+. -+.+|.++++.+||..+....
T Consensus 55 ~~G~l~pG~tI-VE~TSGNTGI~LA~vaa~~Gy~~iivmP~~~S~er~~~l~a~GAevi~t~~ 116 (300)
T COG0031 55 KRGLLKPGGTI-VEATSGNTGIALAMVAAAKGYRLIIVMPETMSQERRKLLRALGAEVILTPG 116 (300)
T ss_pred HcCCCCCCCEE-EEcCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEcCC
Confidence 34568999944 446 799999999999999996666663 378999999999998887544
No 146
>PRK08017 oxidoreductase; Provisional
Probab=96.00 E-value=0.047 Score=45.23 Aligned_cols=47 Identities=26% Similarity=0.347 Sum_probs=40.0
Q ss_pred CeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEE
Q 025712 180 TNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADET 227 (249)
Q Consensus 180 ~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~v 227 (249)
++++|.| +|++|...++.....|+ +++++.++.++.+.++++++..+
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~ 50 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRRGY-RVLAACRKPDDVARMNSLGFTGI 50 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHhHHHHhCCCeEE
Confidence 5799998 59999999999999999 78889899998888887776543
No 147
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=95.95 E-value=0.022 Score=51.05 Aligned_cols=48 Identities=33% Similarity=0.369 Sum_probs=41.4
Q ss_pred CCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCC
Q 025712 176 VGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGA 224 (249)
Q Consensus 176 ~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga 224 (249)
...|++++|.|.|.+|..+++.++.+|+ +|++++.++.+...+...|+
T Consensus 192 ~l~Gk~VvViG~G~IG~~vA~~ak~~Ga-~ViV~d~dp~r~~~A~~~G~ 239 (406)
T TIGR00936 192 LIAGKTVVVAGYGWCGKGIAMRARGMGA-RVIVTEVDPIRALEAAMDGF 239 (406)
T ss_pred CCCcCEEEEECCCHHHHHHHHHHhhCcC-EEEEEeCChhhHHHHHhcCC
Confidence 3689999999999999999999999999 79999888877666665565
No 148
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=95.83 E-value=0.097 Score=42.83 Aligned_cols=41 Identities=24% Similarity=0.304 Sum_probs=35.7
Q ss_pred CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712 178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA 219 (249)
Q Consensus 178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~ 219 (249)
.+++++|.| +|++|..+++.+...|+ .|+.+++++++.+.+
T Consensus 4 ~~~~vlItGa~g~iG~~~a~~l~~~G~-~V~~~~r~~~~~~~~ 45 (238)
T PRK05786 4 KGKKVAIIGVSEGLGYAVAYFALKEGA-QVCINSRNENKLKRM 45 (238)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence 468999998 79999999999999999 788888888877665
No 149
>PRK06182 short chain dehydrogenase; Validated
Probab=95.72 E-value=0.092 Score=44.14 Aligned_cols=48 Identities=21% Similarity=0.231 Sum_probs=38.9
Q ss_pred CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCE
Q 025712 178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADE 226 (249)
Q Consensus 178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~ 226 (249)
.+++++|+| +|++|...++.+...|+ +|++++++.++.+.+.+.++..
T Consensus 2 ~~k~vlItGasggiG~~la~~l~~~G~-~V~~~~r~~~~l~~~~~~~~~~ 50 (273)
T PRK06182 2 QKKVALVTGASSGIGKATARRLAAQGY-TVYGAARRVDKMEDLASLGVHP 50 (273)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHhCCCeE
Confidence 467899998 69999999998888999 7888888888877666555543
No 150
>PRK05693 short chain dehydrogenase; Provisional
Probab=95.61 E-value=0.098 Score=44.00 Aligned_cols=51 Identities=24% Similarity=0.219 Sum_probs=40.1
Q ss_pred CeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEE-ecCC
Q 025712 180 TNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADET-AKVS 231 (249)
Q Consensus 180 ~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~v-i~~~ 231 (249)
+++||+| +|++|...++.+...|+ .|++++++.++.+.+.+.+...+ .|..
T Consensus 2 k~vlItGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~Dl~ 54 (274)
T PRK05693 2 PVVLITGCSSGIGRALADAFKAAGY-EVWATARKAEDVEALAAAGFTAVQLDVN 54 (274)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHCCCeEEEeeCC
Confidence 4789998 79999999998888999 79999888888777776665443 3444
No 151
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=95.58 E-value=0.074 Score=45.17 Aligned_cols=52 Identities=19% Similarity=0.125 Sum_probs=41.7
Q ss_pred HHHHHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHH
Q 025712 169 HACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR 220 (249)
Q Consensus 169 ~~l~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~ 220 (249)
.+++......+++++|+|+|+.+.+++..++..|+.++.++.++.+|.+.+.
T Consensus 112 ~~L~~~~~~~~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~la 163 (272)
T PRK12550 112 KLLASYQVPPDLVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKALA 163 (272)
T ss_pred HHHHhcCCCCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHH
Confidence 3444444555679999999999999999999999988999999988877653
No 152
>PLN02494 adenosylhomocysteinase
Probab=95.56 E-value=0.04 Score=50.15 Aligned_cols=47 Identities=30% Similarity=0.282 Sum_probs=39.7
Q ss_pred CCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCC
Q 025712 177 GPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGA 224 (249)
Q Consensus 177 ~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga 224 (249)
-.|++++|.|.|.+|..+++.++.+|+ +|++++.++.+...+...|+
T Consensus 252 LaGKtVvViGyG~IGr~vA~~aka~Ga-~VIV~e~dp~r~~eA~~~G~ 298 (477)
T PLN02494 252 IAGKVAVICGYGDVGKGCAAAMKAAGA-RVIVTEIDPICALQALMEGY 298 (477)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchhhHHHHhcCC
Confidence 579999999999999999999999999 79999888776555554554
No 153
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.48 E-value=0.051 Score=50.09 Aligned_cols=50 Identities=30% Similarity=0.415 Sum_probs=42.4
Q ss_pred CCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCE
Q 025712 176 VGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADE 226 (249)
Q Consensus 176 ~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~ 226 (249)
+.++++++|+|.|..|++++.+++..|+ .|++.|..+++.+.++++|+..
T Consensus 9 ~~~~~~v~V~G~G~sG~aa~~~L~~~G~-~v~~~D~~~~~~~~l~~~g~~~ 58 (488)
T PRK03369 9 LLPGAPVLVAGAGVTGRAVLAALTRFGA-RPTVCDDDPDALRPHAERGVAT 58 (488)
T ss_pred ccCCCeEEEEcCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHhCCCEE
Confidence 4578999999999999999999999999 7888987777777677777643
No 154
>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]
Probab=95.40 E-value=0.089 Score=45.00 Aligned_cols=67 Identities=10% Similarity=0.073 Sum_probs=49.3
Q ss_pred CCCCeEEEEc-CChHHHH-HHHHHHHcCCCeEEEEeCChhHHHHHH-----HcCC---CEEecCCCCcccHHHHHHHHHH
Q 025712 177 GPETNVMIMG-SGPIGLV-TLLAARAFGAPRIIITDVDVQRLSIAR-----NLGA---DETAKVSTDIEMWGRYKMQWVQ 246 (249)
Q Consensus 177 ~~g~~vlI~G-~g~vG~~-ai~la~~~G~~~vi~~~~~~~~~~~~~-----~~ga---~~vi~~~~~~~~~~~~~~~~~~ 246 (249)
+-|+|.+|.| +.++|.+ |-+||+ +|+ +++.+.++.+|++..+ +.++ ..++|+..+++ ..+.+++.+.
T Consensus 47 ~~g~WAVVTGaTDGIGKayA~eLAk-rG~-nvvLIsRt~~KL~~v~kEI~~~~~vev~~i~~Dft~~~~-~ye~i~~~l~ 123 (312)
T KOG1014|consen 47 KLGSWAVVTGATDGIGKAYARELAK-RGF-NVVLISRTQEKLEAVAKEIEEKYKVEVRIIAIDFTKGDE-VYEKLLEKLA 123 (312)
T ss_pred hcCCEEEEECCCCcchHHHHHHHHH-cCC-EEEEEeCCHHHHHHHHHHHHHHhCcEEEEEEEecCCCch-hHHHHHHHhc
Confidence 4679999998 6899977 667777 999 7999999999988774 3343 35778887655 4556655443
No 155
>PRK04148 hypothetical protein; Provisional
Probab=95.35 E-value=0.13 Score=38.84 Aligned_cols=52 Identities=17% Similarity=0.344 Sum_probs=40.5
Q ss_pred CCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEe
Q 025712 175 NVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETA 228 (249)
Q Consensus 175 ~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi 228 (249)
...++.++++.|.| .|..........|. .|+++|.+++..+.+++.+.+.++
T Consensus 13 ~~~~~~kileIG~G-fG~~vA~~L~~~G~-~ViaIDi~~~aV~~a~~~~~~~v~ 64 (134)
T PRK04148 13 EKGKNKKIVELGIG-FYFKVAKKLKESGF-DVIVIDINEKAVEKAKKLGLNAFV 64 (134)
T ss_pred ccccCCEEEEEEec-CCHHHHHHHHHCCC-EEEEEECCHHHHHHHHHhCCeEEE
Confidence 33457889999988 78755555557898 899999999999999888765544
No 156
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=95.34 E-value=0.061 Score=42.58 Aligned_cols=47 Identities=30% Similarity=0.318 Sum_probs=38.5
Q ss_pred CCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCC
Q 025712 177 GPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGA 224 (249)
Q Consensus 177 ~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga 224 (249)
-.|++|.|+|.|.+|+..++.++.+|+ +|++.+++........+.+.
T Consensus 34 l~g~tvgIiG~G~IG~~vA~~l~~fG~-~V~~~d~~~~~~~~~~~~~~ 80 (178)
T PF02826_consen 34 LRGKTVGIIGYGRIGRAVARRLKAFGM-RVIGYDRSPKPEEGADEFGV 80 (178)
T ss_dssp STTSEEEEESTSHHHHHHHHHHHHTT--EEEEEESSCHHHHHHHHTTE
T ss_pred cCCCEEEEEEEcCCcCeEeeeeecCCc-eeEEecccCChhhhcccccc
Confidence 469999999999999999999999999 89999988776654444443
No 157
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=95.32 E-value=0.077 Score=42.93 Aligned_cols=48 Identities=23% Similarity=0.351 Sum_probs=40.4
Q ss_pred CCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHH-cCCC
Q 025712 177 GPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN-LGAD 225 (249)
Q Consensus 177 ~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~-~ga~ 225 (249)
-.|++++|+|.|.+|..+.+.+...|+ +|++++.+.++.+.+.+ +|+.
T Consensus 26 l~gk~v~I~G~G~vG~~~A~~L~~~G~-~Vvv~D~~~~~~~~~~~~~g~~ 74 (200)
T cd01075 26 LEGKTVAVQGLGKVGYKLAEHLLEEGA-KLIVADINEEAVARAAELFGAT 74 (200)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHcCCE
Confidence 367899999999999999999999999 78899988888776654 4643
No 158
>PRK08324 short chain dehydrogenase; Validated
Probab=95.28 E-value=0.08 Score=50.91 Aligned_cols=79 Identities=18% Similarity=0.233 Sum_probs=54.9
Q ss_pred CceeEEEEecCCceEECCCCCChhhhccccchHHHHHHHHHcCCCCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeC
Q 025712 133 GSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANVGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDV 211 (249)
Q Consensus 133 g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~a~~~l~~~~~~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~ 211 (249)
-++++|..+++..++.+ +.++.+++.+... ......+|+++||+| +|++|.+.++.+...|+ .|+++++
T Consensus 385 ~~~~~~~~l~~~~~f~i-~~~~~e~a~l~~~--------~~~~~l~gk~vLVTGasggIG~~la~~L~~~Ga-~Vvl~~r 454 (681)
T PRK08324 385 EAVGRYEPLSEQEAFDI-EYWSLEQAKLQRM--------PKPKPLAGKVALVTGAAGGIGKATAKRLAAEGA-CVVLADL 454 (681)
T ss_pred hhcCCccCCChhhhcce-eeehhhhhhhhcC--------CCCcCCCCCEEEEecCCCHHHHHHHHHHHHCcC-EEEEEeC
Confidence 45556666676666666 5566666642100 012234689999998 79999999999999999 7999988
Q ss_pred ChhHHHHHHH
Q 025712 212 DVQRLSIARN 221 (249)
Q Consensus 212 ~~~~~~~~~~ 221 (249)
+.++.+.+.+
T Consensus 455 ~~~~~~~~~~ 464 (681)
T PRK08324 455 DEEAAEAAAA 464 (681)
T ss_pred CHHHHHHHHH
Confidence 8877665543
No 159
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=95.25 E-value=0.065 Score=45.73 Aligned_cols=45 Identities=22% Similarity=0.296 Sum_probs=40.2
Q ss_pred CCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHH
Q 025712 177 GPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN 221 (249)
Q Consensus 177 ~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~ 221 (249)
.++++++|+|+|+.+.+++.-++..|+.++.++.++.+|.+.+.+
T Consensus 124 ~~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~ 168 (283)
T COG0169 124 VTGKRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELAD 168 (283)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHH
Confidence 468999999999999999999999998889999999999777743
No 160
>PRK12828 short chain dehydrogenase; Provisional
Probab=95.11 E-value=0.18 Score=41.03 Aligned_cols=37 Identities=27% Similarity=0.258 Sum_probs=31.2
Q ss_pred CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhH
Q 025712 178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQR 215 (249)
Q Consensus 178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~ 215 (249)
+++++||+| +|.+|...++.....|+ +|++++++.++
T Consensus 6 ~~k~vlItGatg~iG~~la~~l~~~G~-~v~~~~r~~~~ 43 (239)
T PRK12828 6 QGKVVAITGGFGGLGRATAAWLAARGA-RVALIGRGAAP 43 (239)
T ss_pred CCCEEEEECCCCcHhHHHHHHHHHCCC-eEEEEeCChHh
Confidence 478999998 79999999988888899 68888886655
No 161
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=95.08 E-value=0.092 Score=44.97 Aligned_cols=45 Identities=27% Similarity=0.462 Sum_probs=38.3
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcC
Q 025712 178 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLG 223 (249)
Q Consensus 178 ~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~g 223 (249)
.|++++|+|.|.+|.+++..++.+|+ +|.+.+++.++.+.+.++|
T Consensus 150 ~gk~v~IiG~G~iG~avA~~L~~~G~-~V~v~~R~~~~~~~~~~~g 194 (287)
T TIGR02853 150 HGSNVMVLGFGRTGMTIARTFSALGA-RVFVGARSSADLARITEMG 194 (287)
T ss_pred CCCEEEEEcChHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHCC
Confidence 57899999999999999999999999 7888888887765555444
No 162
>PRK07060 short chain dehydrogenase; Provisional
Probab=95.01 E-value=0.18 Score=41.40 Aligned_cols=47 Identities=23% Similarity=0.362 Sum_probs=37.5
Q ss_pred CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHH-cCCC
Q 025712 178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN-LGAD 225 (249)
Q Consensus 178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~-~ga~ 225 (249)
++++++|.| +|++|...++.+...|+ +|+.++++.++.+.+.+ .+..
T Consensus 8 ~~~~~lItGa~g~iG~~~a~~l~~~g~-~V~~~~r~~~~~~~~~~~~~~~ 56 (245)
T PRK07060 8 SGKSVLVTGASSGIGRACAVALAQRGA-RVVAAARNAAALDRLAGETGCE 56 (245)
T ss_pred CCCEEEEeCCcchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCe
Confidence 568999998 69999999999999999 78888888877765543 4443
No 163
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=94.95 E-value=0.088 Score=45.02 Aligned_cols=44 Identities=27% Similarity=0.363 Sum_probs=38.4
Q ss_pred CCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHH
Q 025712 177 GPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR 220 (249)
Q Consensus 177 ~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~ 220 (249)
..+++++|+|+|+.|.+++..+...|+.++.+++++.+|.+.+.
T Consensus 125 ~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la 168 (284)
T PRK12549 125 ASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALA 168 (284)
T ss_pred ccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH
Confidence 35689999999999999999999999988999999988876653
No 164
>PRK06139 short chain dehydrogenase; Provisional
Probab=94.80 E-value=0.2 Score=43.74 Aligned_cols=47 Identities=36% Similarity=0.455 Sum_probs=37.7
Q ss_pred CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH----HHcCCC
Q 025712 178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA----RNLGAD 225 (249)
Q Consensus 178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~----~~~ga~ 225 (249)
.++++||+| +|++|.+.++.+...|+ +|+.+++++++.+.+ ++.|.+
T Consensus 6 ~~k~vlITGAs~GIG~aia~~la~~G~-~Vvl~~R~~~~l~~~~~~~~~~g~~ 57 (330)
T PRK06139 6 HGAVVVITGASSGIGQATAEAFARRGA-RLVLAARDEEALQAVAEECRALGAE 57 (330)
T ss_pred CCCEEEEcCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCc
Confidence 568999998 69999999999999999 788888888876543 345654
No 165
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=94.72 E-value=0.26 Score=41.13 Aligned_cols=43 Identities=21% Similarity=0.236 Sum_probs=36.2
Q ss_pred CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHH
Q 025712 178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN 221 (249)
Q Consensus 178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~ 221 (249)
++++++|.| +|++|...++.....|+ +|++++++.++.+.+++
T Consensus 4 ~~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~l~~ 47 (262)
T TIGR03325 4 KGEVVLVTGGASGLGRAIVDRFVAEGA-RVAVLDKSAAGLQELEA 47 (262)
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHh
Confidence 478999998 79999999988888999 78888888877766655
No 166
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=94.71 E-value=0.23 Score=41.87 Aligned_cols=45 Identities=18% Similarity=0.155 Sum_probs=39.3
Q ss_pred CCCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHH
Q 025712 176 VGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN 221 (249)
Q Consensus 176 ~~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~ 221 (249)
...++++||+| ++++|..........|. .++.+.++++|++.+.+
T Consensus 3 ~~~~~~~lITGASsGIG~~~A~~lA~~g~-~liLvaR~~~kL~~la~ 48 (265)
T COG0300 3 PMKGKTALITGASSGIGAELAKQLARRGY-NLILVARREDKLEALAK 48 (265)
T ss_pred CCCCcEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCcHHHHHHHHH
Confidence 35678999998 69999999999999999 89999999999888743
No 167
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=94.71 E-value=0.11 Score=44.40 Aligned_cols=42 Identities=17% Similarity=0.306 Sum_probs=37.3
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712 178 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA 219 (249)
Q Consensus 178 ~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~ 219 (249)
.+++++|+|+|+.+.+++..+...|+.++.++.++.+|.+.+
T Consensus 124 ~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~L 165 (282)
T TIGR01809 124 AGFRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRL 165 (282)
T ss_pred CCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHH
Confidence 578999999999999999999999998899999998877655
No 168
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=94.63 E-value=0.12 Score=44.17 Aligned_cols=44 Identities=20% Similarity=0.357 Sum_probs=38.0
Q ss_pred CCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHH
Q 025712 177 GPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR 220 (249)
Q Consensus 177 ~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~ 220 (249)
..+++++|+|+|+.+.+++..+...|+.++.++.++.+|.+.+.
T Consensus 125 ~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La 168 (283)
T PRK14027 125 AKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALA 168 (283)
T ss_pred cCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHH
Confidence 35789999999999999999888899988989999988876664
No 169
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=94.57 E-value=0.13 Score=43.82 Aligned_cols=44 Identities=20% Similarity=0.322 Sum_probs=37.6
Q ss_pred CCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHH
Q 025712 177 GPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR 220 (249)
Q Consensus 177 ~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~ 220 (249)
..+++++|+|+|++|.+++..+...|+.+|.++.++.++.+.+.
T Consensus 121 ~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~ 164 (278)
T PRK00258 121 LKGKRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELA 164 (278)
T ss_pred CCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHH
Confidence 45789999999999999999999999668999999888765553
No 170
>PRK08177 short chain dehydrogenase; Provisional
Probab=94.55 E-value=0.23 Score=40.45 Aligned_cols=43 Identities=21% Similarity=0.162 Sum_probs=34.9
Q ss_pred CeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcC
Q 025712 180 TNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLG 223 (249)
Q Consensus 180 ~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~g 223 (249)
++++|.| +|++|...+......|+ +|+++++++++.+.+++++
T Consensus 2 k~vlItG~sg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~ 45 (225)
T PRK08177 2 RTALIIGASRGLGLGLVDRLLERGW-QVTATVRGPQQDTALQALP 45 (225)
T ss_pred CEEEEeCCCchHHHHHHHHHHhCCC-EEEEEeCCCcchHHHHhcc
Confidence 4688998 79999998888888899 8999988887776666554
No 171
>PRK06057 short chain dehydrogenase; Provisional
Probab=94.52 E-value=0.35 Score=40.13 Aligned_cols=46 Identities=28% Similarity=0.389 Sum_probs=36.7
Q ss_pred CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH-HHcCC
Q 025712 178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA-RNLGA 224 (249)
Q Consensus 178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~~ga 224 (249)
++++++|.| +|++|.+.++.....|+ .++++++++.+.+.+ ++++.
T Consensus 6 ~~~~vlItGasggIG~~~a~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~ 53 (255)
T PRK06057 6 AGRVAVITGGGSGIGLATARRLAAEGA-TVVVGDIDPEAGKAAADEVGG 53 (255)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHcCC
Confidence 578999998 69999999999989999 788888887765544 44544
No 172
>KOG1252 consensus Cystathionine beta-synthase and related enzymes [Amino acid transport and metabolism]
Probab=94.48 E-value=0.27 Score=42.56 Aligned_cols=63 Identities=22% Similarity=0.270 Sum_probs=50.9
Q ss_pred HHHHHH----HHcCCCCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeC---ChhHHHHHHHcCCCEEec
Q 025712 166 VGVHAC----RRANVGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDV---DVQRLSIARNLGADETAK 229 (249)
Q Consensus 166 ~a~~~l----~~~~~~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~---~~~~~~~~~~~ga~~vi~ 229 (249)
.||+++ ....++||++.||-. +|..|.....+|...|+ +++++-. +.+|...++++|+..+.-
T Consensus 86 ia~sMi~~Ae~~G~i~pg~stliEpTSGNtGigLA~~~a~~Gy-k~i~tmP~~ms~Ek~~~l~a~Gaeii~t 156 (362)
T KOG1252|consen 86 IAWSMIEDAEKKGLITPGKSTLIEPTSGNTGIGLAYMAALRGY-KCIITMPEKMSKEKRILLRALGAEIILT 156 (362)
T ss_pred HHHHHHHHHHHcCCccCCceEEEecCCCchHHHHHHHHHHcCc-eEEEEechhhhHHHHHHHHHcCCEEEec
Confidence 456665 336789999999998 79999999999999999 5665533 668999999999988763
No 173
>PRK06949 short chain dehydrogenase; Provisional
Probab=94.47 E-value=0.36 Score=39.92 Aligned_cols=42 Identities=19% Similarity=0.253 Sum_probs=35.5
Q ss_pred CCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712 177 GPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA 219 (249)
Q Consensus 177 ~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~ 219 (249)
-.+++++|+| +|++|.+.+..+...|+ +|+++.++.++.+.+
T Consensus 7 ~~~k~ilItGasg~IG~~~a~~l~~~G~-~Vi~~~r~~~~~~~~ 49 (258)
T PRK06949 7 LEGKVALVTGASSGLGARFAQVLAQAGA-KVVLASRRVERLKEL 49 (258)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence 4579999998 79999999999888999 789888888776554
No 174
>PRK07831 short chain dehydrogenase; Provisional
Probab=94.40 E-value=0.46 Score=39.57 Aligned_cols=43 Identities=30% Similarity=0.417 Sum_probs=34.7
Q ss_pred CCCCCeEEEEc-CC-hHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712 176 VGPETNVMIMG-SG-PIGLVTLLAARAFGAPRIIITDVDVQRLSIA 219 (249)
Q Consensus 176 ~~~g~~vlI~G-~g-~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~ 219 (249)
...+++++|+| +| ++|.+.++.+...|+ .|+++++++++.+..
T Consensus 14 ~~~~k~vlItG~sg~gIG~~ia~~l~~~G~-~V~~~~~~~~~~~~~ 58 (262)
T PRK07831 14 LLAGKVVLVTAAAGTGIGSATARRALEEGA-RVVISDIHERRLGET 58 (262)
T ss_pred ccCCCEEEEECCCcccHHHHHHHHHHHcCC-EEEEEeCCHHHHHHH
Confidence 34578999998 55 799999999999999 688888877665544
No 175
>PRK07814 short chain dehydrogenase; Provisional
Probab=94.36 E-value=0.4 Score=40.01 Aligned_cols=41 Identities=20% Similarity=0.284 Sum_probs=34.5
Q ss_pred CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712 178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA 219 (249)
Q Consensus 178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~ 219 (249)
+++++||.| +|++|...++.....|+ +|++++++.++.+.+
T Consensus 9 ~~~~vlItGasggIG~~~a~~l~~~G~-~Vi~~~r~~~~~~~~ 50 (263)
T PRK07814 9 DDQVAVVTGAGRGLGAAIALAFAEAGA-DVLIAARTESQLDEV 50 (263)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence 578999998 78999999998888999 888888887765544
No 176
>PRK07825 short chain dehydrogenase; Provisional
Probab=94.31 E-value=0.46 Score=39.83 Aligned_cols=44 Identities=39% Similarity=0.460 Sum_probs=35.2
Q ss_pred CCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH-HHcC
Q 025712 179 ETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA-RNLG 223 (249)
Q Consensus 179 g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~~g 223 (249)
++++||+| +|++|...++.....|+ .++++++++++.+.+ ++++
T Consensus 5 ~~~ilVtGasggiG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~ 50 (273)
T PRK07825 5 GKVVAITGGARGIGLATARALAALGA-RVAIGDLDEALAKETAAELG 50 (273)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhc
Confidence 67899998 79999998888888899 688888888776654 3444
No 177
>PRK12742 oxidoreductase; Provisional
Probab=94.25 E-value=0.28 Score=40.00 Aligned_cols=47 Identities=21% Similarity=0.240 Sum_probs=34.0
Q ss_pred CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeC-ChhHHHHH-HHcCCC
Q 025712 178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDV-DVQRLSIA-RNLGAD 225 (249)
Q Consensus 178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~-~~~~~~~~-~~~ga~ 225 (249)
+++++||+| +|++|.+.++.....|+ +++.+.+ ++++.+.+ +++++.
T Consensus 5 ~~k~vlItGasggIG~~~a~~l~~~G~-~v~~~~~~~~~~~~~l~~~~~~~ 54 (237)
T PRK12742 5 TGKKVLVLGGSRGIGAAIVRRFVTDGA-NVRFTYAGSKDAAERLAQETGAT 54 (237)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEecCCCHHHHHHHHHHhCCe
Confidence 478999998 79999999999999999 6666533 44444443 445654
No 178
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=94.23 E-value=0.41 Score=38.85 Aligned_cols=56 Identities=20% Similarity=0.329 Sum_probs=44.9
Q ss_pred HHHHHHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHH----HHHHcCCCE
Q 025712 168 VHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLS----IARNLGADE 226 (249)
Q Consensus 168 ~~~l~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~----~~~~~ga~~ 226 (249)
..+++...++++++||=+|+|+ |+.+.-+++..| +|+.+++.++-.+ .++.+|...
T Consensus 62 A~m~~~L~~~~g~~VLEIGtGs-GY~aAvla~l~~--~V~siEr~~~L~~~A~~~L~~lg~~n 121 (209)
T COG2518 62 ARMLQLLELKPGDRVLEIGTGS-GYQAAVLARLVG--RVVSIERIEELAEQARRNLETLGYEN 121 (209)
T ss_pred HHHHHHhCCCCCCeEEEECCCc-hHHHHHHHHHhC--eEEEEEEcHHHHHHHHHHHHHcCCCc
Confidence 3456778999999999999876 999999999998 7999998876433 356678854
No 179
>PRK06841 short chain dehydrogenase; Provisional
Probab=94.21 E-value=0.37 Score=39.83 Aligned_cols=44 Identities=23% Similarity=0.257 Sum_probs=35.6
Q ss_pred CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHc
Q 025712 178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNL 222 (249)
Q Consensus 178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ 222 (249)
.++++||.| +|++|...++.....|+ +|+.+.++.+..+...++
T Consensus 14 ~~k~vlItGas~~IG~~la~~l~~~G~-~Vi~~~r~~~~~~~~~~~ 58 (255)
T PRK06841 14 SGKVAVVTGGASGIGHAIAELFAAKGA-RVALLDRSEDVAEVAAQL 58 (255)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHh
Confidence 478999998 69999998888888999 788888887765555554
No 180
>PRK05872 short chain dehydrogenase; Provisional
Probab=94.20 E-value=0.26 Score=42.06 Aligned_cols=45 Identities=24% Similarity=0.363 Sum_probs=37.1
Q ss_pred CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH-HHcC
Q 025712 178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA-RNLG 223 (249)
Q Consensus 178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~~g 223 (249)
+++++||+| +|++|.+.++.....|+ +|+.++++.++.+.+ ++++
T Consensus 8 ~gk~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~l~~~~~~l~ 54 (296)
T PRK05872 8 AGKVVVVTGAARGIGAELARRLHARGA-KLALVDLEEAELAALAAELG 54 (296)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhc
Confidence 578999998 79999999999999999 788888888776654 4454
No 181
>PRK05866 short chain dehydrogenase; Provisional
Probab=94.14 E-value=0.53 Score=40.19 Aligned_cols=41 Identities=17% Similarity=0.207 Sum_probs=34.0
Q ss_pred CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712 178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA 219 (249)
Q Consensus 178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~ 219 (249)
.+++++|.| +|++|.+.++.+...|+ .|++++++.++.+.+
T Consensus 39 ~~k~vlItGasggIG~~la~~La~~G~-~Vi~~~R~~~~l~~~ 80 (293)
T PRK05866 39 TGKRILLTGASSGIGEAAAEQFARRGA-TVVAVARREDLLDAV 80 (293)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHH
Confidence 457899998 79999998888888899 789998888776554
No 182
>PRK05867 short chain dehydrogenase; Provisional
Probab=94.10 E-value=0.37 Score=39.88 Aligned_cols=41 Identities=27% Similarity=0.283 Sum_probs=34.3
Q ss_pred CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712 178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA 219 (249)
Q Consensus 178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~ 219 (249)
.++++||.| +|++|.+.++.....|+ +|+.++++.++.+.+
T Consensus 8 ~~k~vlVtGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~ 49 (253)
T PRK05867 8 HGKRALITGASTGIGKRVALAYVEAGA-QVAIAARHLDALEKL 49 (253)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCHHHHHHH
Confidence 478999998 69999999998888999 788888887766544
No 183
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=94.04 E-value=0.45 Score=34.36 Aligned_cols=49 Identities=24% Similarity=0.350 Sum_probs=39.1
Q ss_pred EEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCC
Q 025712 182 VMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVST 232 (249)
Q Consensus 182 vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~ 232 (249)
++|.|.|.+|...++..+..+. .+++++.++++.+.+++.|.. ++.-+.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~-~vvvid~d~~~~~~~~~~~~~-~i~gd~ 49 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGI-DVVVIDRDPERVEELREEGVE-VIYGDA 49 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTS-EEEEEESSHHHHHHHHHTTSE-EEES-T
T ss_pred eEEEcCCHHHHHHHHHHHhCCC-EEEEEECCcHHHHHHHhcccc-cccccc
Confidence 5778999999999999999775 899999999999999988844 444443
No 184
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=93.99 E-value=0.39 Score=39.98 Aligned_cols=43 Identities=23% Similarity=0.301 Sum_probs=36.2
Q ss_pred CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHH
Q 025712 178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN 221 (249)
Q Consensus 178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~ 221 (249)
+++++||+| +|++|...++.+...|+ +|+.+++++++.+.+.+
T Consensus 5 ~~k~vlVtGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~ 48 (263)
T PRK06200 5 HGQVALITGGGSGIGRALVERFLAEGA-RVAVLERSAEKLASLRQ 48 (263)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH
Confidence 578999998 79999999988889999 78888888887766654
No 185
>PRK11761 cysM cysteine synthase B; Provisional
Probab=93.98 E-value=0.9 Score=39.04 Aligned_cols=60 Identities=20% Similarity=0.258 Sum_probs=47.4
Q ss_pred HHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeC--ChhHHHHHHHcCCCEEecCC
Q 025712 172 RRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDV--DVQRLSIARNLGADETAKVS 231 (249)
Q Consensus 172 ~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~--~~~~~~~~~~~ga~~vi~~~ 231 (249)
+...+.+|++|+...+|..|++....|+..|.+.++.+.. +++|.+.++.+|++.++...
T Consensus 56 ~~g~~~~g~~vv~aSsGN~g~alA~~a~~~G~~~~i~~p~~~~~~k~~~~~~~GA~v~~~~~ 117 (296)
T PRK11761 56 KRGEIKPGDTLIEATSGNTGIALAMIAAIKGYRMKLIMPENMSQERRAAMRAYGAELILVPK 117 (296)
T ss_pred HcCCCCCCCEEEEeCCChHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEeCC
Confidence 3445667777666568999999999999999977777743 56999999999998876543
No 186
>PF13823 ADH_N_assoc: Alcohol dehydrogenase GroES-associated; PDB: 2DPH_B.
Probab=93.96 E-value=0.083 Score=26.92 Aligned_cols=22 Identities=18% Similarity=0.225 Sum_probs=16.0
Q ss_pred ceEEEEecCCCeEEEEecCCCC
Q 025712 15 NMAAWLLGIKTLKIQPYHLPTL 36 (249)
Q Consensus 15 ~~~~~~~~~~~l~~~~~~~p~~ 36 (249)
|+|+++.|++.++++++|.|.+
T Consensus 1 MkAv~y~G~~~v~ve~VpdP~I 22 (23)
T PF13823_consen 1 MKAVVYHGPKDVRVEEVPDPKI 22 (23)
T ss_dssp -EEEEEEETTEEEEEEE----S
T ss_pred CcceEEeCCCceEEEECCCccc
Confidence 6899999999999999999875
No 187
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=93.93 E-value=0.19 Score=45.88 Aligned_cols=47 Identities=30% Similarity=0.410 Sum_probs=37.8
Q ss_pred CCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcC
Q 025712 176 VGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLG 223 (249)
Q Consensus 176 ~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~g 223 (249)
.-.|++++|.|.|.+|...++.++.+|+ +|++++.++.+...+...|
T Consensus 251 ~LaGKtVgVIG~G~IGr~vA~rL~a~Ga-~ViV~e~dp~~a~~A~~~G 297 (476)
T PTZ00075 251 MIAGKTVVVCGYGDVGKGCAQALRGFGA-RVVVTEIDPICALQAAMEG 297 (476)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchhHHHHHhcC
Confidence 4579999999999999999999999999 7888877766653333334
No 188
>KOG1207 consensus Diacetyl reductase/L-xylulose reductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=93.87 E-value=0.32 Score=38.40 Aligned_cols=60 Identities=20% Similarity=0.294 Sum_probs=44.9
Q ss_pred CCCeEEEEcCC-hHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCCCcccHH
Q 025712 178 PETNVMIMGSG-PIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWG 238 (249)
Q Consensus 178 ~g~~vlI~G~g-~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~ 238 (249)
.|..|++.|+| ++|...++-....|+ +||++.++++.+..+-+.-..+++-..-|-.+|.
T Consensus 6 aG~~vlvTgagaGIG~~~v~~La~aGA-~ViAvaR~~a~L~sLV~e~p~~I~Pi~~Dls~we 66 (245)
T KOG1207|consen 6 AGVIVLVTGAGAGIGKEIVLSLAKAGA-QVIAVARNEANLLSLVKETPSLIIPIVGDLSAWE 66 (245)
T ss_pred cceEEEeecccccccHHHHHHHHhcCC-EEEEEecCHHHHHHHHhhCCcceeeeEecccHHH
Confidence 57889999864 899999998889999 8999999999888776655444443333334553
No 189
>PRK07677 short chain dehydrogenase; Provisional
Probab=93.84 E-value=0.51 Score=39.05 Aligned_cols=40 Identities=30% Similarity=0.342 Sum_probs=33.3
Q ss_pred CCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712 179 ETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA 219 (249)
Q Consensus 179 g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~ 219 (249)
|++++|.| +|++|.+.++.....|+ +|++++++.++.+.+
T Consensus 1 ~k~~lItG~s~giG~~ia~~l~~~G~-~Vi~~~r~~~~~~~~ 41 (252)
T PRK07677 1 EKVVIITGGSSGMGKAMAKRFAEEGA-NVVITGRTKEKLEEA 41 (252)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence 57899998 79999999999999999 788888887765544
No 190
>PRK12829 short chain dehydrogenase; Provisional
Probab=93.80 E-value=0.43 Score=39.55 Aligned_cols=44 Identities=25% Similarity=0.278 Sum_probs=36.2
Q ss_pred CCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHH
Q 025712 177 GPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN 221 (249)
Q Consensus 177 ~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~ 221 (249)
-+++++||.| +|++|...+..+...|+ .|+.++++.+..+.+.+
T Consensus 9 ~~~~~vlItGa~g~iG~~~a~~L~~~g~-~V~~~~r~~~~~~~~~~ 53 (264)
T PRK12829 9 LDGLRVLVTGGASGIGRAIAEAFAEAGA-RVHVCDVSEAALAATAA 53 (264)
T ss_pred cCCCEEEEeCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH
Confidence 5778999998 79999999999889999 68888887776665543
No 191
>TIGR01138 cysM cysteine synthase B. Alternate name: O-acetylserine (thiol)-lyase
Probab=93.79 E-value=1.1 Score=38.31 Aligned_cols=58 Identities=19% Similarity=0.247 Sum_probs=45.2
Q ss_pred HHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeC--ChhHHHHHHHcCCCEEec
Q 025712 172 RRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDV--DVQRLSIARNLGADETAK 229 (249)
Q Consensus 172 ~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~--~~~~~~~~~~~ga~~vi~ 229 (249)
+...+.++++++...+|..|.+....|+.+|.+.++.+.. +++|.+.++.+|++.++.
T Consensus 52 ~~g~~~~g~~vv~aSsGN~g~alA~~a~~~G~~~~i~~p~~~~~~k~~~~~~~GA~v~~v 111 (290)
T TIGR01138 52 KRGEIKPGDVLIEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERKAAMRAYGAELILV 111 (290)
T ss_pred HcCCCCCCCEEEEECCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCEEEEe
Confidence 3444567777655568999999999999999976666654 468999999999987653
No 192
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=93.72 E-value=0.45 Score=42.46 Aligned_cols=59 Identities=14% Similarity=0.093 Sum_probs=43.2
Q ss_pred hhhhccccchHHHHHHHHHcCC-CCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChh
Q 025712 155 LEEGAMCEPLSVGVHACRRANV-GPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQ 214 (249)
Q Consensus 155 ~~~aa~~~~~~~a~~~l~~~~~-~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~ 214 (249)
..+|.....+.+.-.++..... =+|.+|.|.|.|.||+.+++.+...|+ ++++++.+..
T Consensus 182 r~~aTg~Gv~~~~~~a~~~~g~~l~G~rVaVQG~GNVg~~aa~~l~~~GA-kvva~sds~g 241 (411)
T COG0334 182 RSEATGYGVFYAIREALKALGDDLEGARVAVQGFGNVGQYAAEKLHELGA-KVVAVSDSKG 241 (411)
T ss_pred CCcccceehHHHHHHHHHHcCCCcCCCEEEEECccHHHHHHHHHHHHcCC-EEEEEEcCCC
Confidence 3445444444333344555444 489999999999999999999998999 7888876666
No 193
>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=93.72 E-value=0.11 Score=47.30 Aligned_cols=68 Identities=6% Similarity=-0.023 Sum_probs=49.0
Q ss_pred HcCCCCCCeEE----EEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCC-EEecCCCCcccHHHHHHH
Q 025712 173 RANVGPETNVM----IMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGAD-ETAKVSTDIEMWGRYKMQ 243 (249)
Q Consensus 173 ~~~~~~g~~vl----I~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~-~vi~~~~~~~~~~~~~~~ 243 (249)
..++++|+.+| |+| +|++|.+++|+++..|+ .|+++...+.+....+..+.+ .++|.+. ..+.+.+..
T Consensus 28 l~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~d~~~--~~~~~~l~~ 101 (450)
T PRK08261 28 LRRYRPGQPLLDGPVLVGGAGRLAEALAALLAGLGY-DVVANNDGGLTWAAGWGDRFGALVFDATG--ITDPADLKA 101 (450)
T ss_pred ccCCCCCCCCCCCceEEccCchhHHHHHHHHhhCCC-eeeecCccccccccCcCCcccEEEEECCC--CCCHHHHHH
Confidence 35678888888 775 79999999999999999 788887666655555555665 5666554 444555444
No 194
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=93.71 E-value=0.29 Score=38.29 Aligned_cols=36 Identities=11% Similarity=0.146 Sum_probs=32.1
Q ss_pred EEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHH
Q 025712 182 VMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSI 218 (249)
Q Consensus 182 vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~ 218 (249)
|+|.| +|.+|...++.+...|. .|.++.+++++.+.
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~-~V~~~~R~~~~~~~ 37 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGH-EVTALVRSPSKAED 37 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTS-EEEEEESSGGGHHH
T ss_pred eEEECCCChHHHHHHHHHHHCCC-EEEEEecCchhccc
Confidence 68888 69999999999999998 88888899988776
No 195
>PRK06180 short chain dehydrogenase; Provisional
Probab=93.67 E-value=0.47 Score=39.94 Aligned_cols=44 Identities=25% Similarity=0.145 Sum_probs=36.5
Q ss_pred CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHc
Q 025712 178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNL 222 (249)
Q Consensus 178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ 222 (249)
.++++||.| +|++|.+.++.+...|+ +|++++++.++.+.+.+.
T Consensus 3 ~~~~vlVtGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~l~~~ 47 (277)
T PRK06180 3 SMKTWLITGVSSGFGRALAQAALAAGH-RVVGTVRSEAARADFEAL 47 (277)
T ss_pred CCCEEEEecCCChHHHHHHHHHHhCcC-EEEEEeCCHHHHHHHHhh
Confidence 467899998 79999999988888999 799998888887766553
No 196
>PRK07326 short chain dehydrogenase; Provisional
Probab=93.66 E-value=0.58 Score=38.13 Aligned_cols=41 Identities=32% Similarity=0.303 Sum_probs=33.3
Q ss_pred CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712 178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA 219 (249)
Q Consensus 178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~ 219 (249)
.+++++|+| +|.+|...++.+...|+ +|+++++++++...+
T Consensus 5 ~~~~ilItGatg~iG~~la~~l~~~g~-~V~~~~r~~~~~~~~ 46 (237)
T PRK07326 5 KGKVALITGGSKGIGFAIAEALLAEGY-KVAITARDQKELEEA 46 (237)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHCCC-EEEEeeCCHHHHHHH
Confidence 468899998 69999998888888899 688888877665544
No 197
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=93.66 E-value=0.2 Score=42.37 Aligned_cols=48 Identities=35% Similarity=0.520 Sum_probs=40.8
Q ss_pred HcCCCCCCeEEEEcCChHHHHHHHHHHHcCCC-eEEEEeCChhHHHHHHH
Q 025712 173 RANVGPETNVMIMGSGPIGLVTLLAARAFGAP-RIIITDVDVQRLSIARN 221 (249)
Q Consensus 173 ~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~-~vi~~~~~~~~~~~~~~ 221 (249)
.+.++++++||.+|+|. |..++++++..|.. .+++++.+++.++.+++
T Consensus 72 ~~~~~~g~~VLDiG~G~-G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~ 120 (272)
T PRK11873 72 LAELKPGETVLDLGSGG-GFDCFLAARRVGPTGKVIGVDMTPEMLAKARA 120 (272)
T ss_pred hccCCCCCEEEEeCCCC-CHHHHHHHHHhCCCCEEEEECCCHHHHHHHHH
Confidence 35688999999999887 88888888887753 69999999999888876
No 198
>PRK07890 short chain dehydrogenase; Provisional
Probab=93.66 E-value=0.55 Score=38.82 Aligned_cols=42 Identities=19% Similarity=0.254 Sum_probs=34.4
Q ss_pred CCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712 177 GPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA 219 (249)
Q Consensus 177 ~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~ 219 (249)
-++++++|.| +|++|...+..+...|+ +|+.+++++++.+.+
T Consensus 3 l~~k~vlItGa~~~IG~~la~~l~~~G~-~V~~~~r~~~~~~~~ 45 (258)
T PRK07890 3 LKGKVVVVSGVGPGLGRTLAVRAARAGA-DVVLAARTAERLDEV 45 (258)
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHcCC-EEEEEeCCHHHHHHH
Confidence 3578999998 79999999988889999 788888887665444
No 199
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=93.63 E-value=0.59 Score=38.74 Aligned_cols=46 Identities=20% Similarity=0.159 Sum_probs=32.7
Q ss_pred CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEe-CChhHHHHHHHcCC
Q 025712 178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITD-VDVQRLSIARNLGA 224 (249)
Q Consensus 178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~-~~~~~~~~~~~~ga 224 (249)
.+++++|.| +|++|.+.++.....|+ +++.+. ++++..+.+++.++
T Consensus 6 ~~k~~lItGas~gIG~~~a~~l~~~G~-~v~~~~~~~~~~~~~l~~~~~ 53 (255)
T PRK06463 6 KGKVALITGGTRGIGRAIAEAFLREGA-KVAVLYNSAENEAKELREKGV 53 (255)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCcHHHHHHHHhCCC
Confidence 468899998 79999999888888999 566553 34444555544443
No 200
>PRK06101 short chain dehydrogenase; Provisional
Probab=93.61 E-value=0.47 Score=39.01 Aligned_cols=42 Identities=24% Similarity=0.228 Sum_probs=34.4
Q ss_pred CeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHc
Q 025712 180 TNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNL 222 (249)
Q Consensus 180 ~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ 222 (249)
.+++|.| +|++|...+......|+ +|+++++++++.+.+.+.
T Consensus 2 ~~vlItGas~giG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~ 44 (240)
T PRK06101 2 TAVLITGATSGIGKQLALDYAKQGW-QVIACGRNQSVLDELHTQ 44 (240)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHh
Confidence 5688997 79999988777778899 788899988887776554
No 201
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=93.58 E-value=0.15 Score=43.36 Aligned_cols=49 Identities=22% Similarity=0.464 Sum_probs=35.6
Q ss_pred HHHHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHH
Q 025712 170 ACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR 220 (249)
Q Consensus 170 ~l~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~ 220 (249)
.++++++++|++||-+|.| -|..++.+++..|+ +|.+++.+++..++++
T Consensus 54 ~~~~~~l~~G~~vLDiGcG-wG~~~~~~a~~~g~-~v~gitlS~~Q~~~a~ 102 (273)
T PF02353_consen 54 LCEKLGLKPGDRVLDIGCG-WGGLAIYAAERYGC-HVTGITLSEEQAEYAR 102 (273)
T ss_dssp HHTTTT--TT-EEEEES-T-TSHHHHHHHHHH---EEEEEES-HHHHHHHH
T ss_pred HHHHhCCCCCCEEEEeCCC-ccHHHHHHHHHcCc-EEEEEECCHHHHHHHH
Confidence 3477899999999999977 47788889999999 8999999999988875
No 202
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=93.44 E-value=0.25 Score=42.39 Aligned_cols=36 Identities=11% Similarity=0.119 Sum_probs=30.8
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCCh
Q 025712 178 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDV 213 (249)
Q Consensus 178 ~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~ 213 (249)
.+++++|+|+|+.+.+++..+...|+.++.++.+++
T Consensus 123 ~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~ 158 (288)
T PRK12749 123 KGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRD 158 (288)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 578999999999999877777778998898888874
No 203
>PRK08339 short chain dehydrogenase; Provisional
Probab=93.42 E-value=0.27 Score=41.16 Aligned_cols=41 Identities=20% Similarity=0.173 Sum_probs=34.4
Q ss_pred CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712 178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA 219 (249)
Q Consensus 178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~ 219 (249)
.++++||.| ++++|.+.++.+...|+ +|+.++++.++.+.+
T Consensus 7 ~~k~~lItGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~ 48 (263)
T PRK08339 7 SGKLAFTTASSKGIGFGVARVLARAGA-DVILLSRNEENLKKA 48 (263)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence 478999998 68999999999889999 788888887776544
No 204
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=93.39 E-value=0.29 Score=41.93 Aligned_cols=37 Identities=16% Similarity=0.224 Sum_probs=31.6
Q ss_pred CCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCCh
Q 025712 177 GPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDV 213 (249)
Q Consensus 177 ~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~ 213 (249)
-.+++++|+|+|+.|.+++..+...|+++|.++.++.
T Consensus 124 ~~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~ 160 (289)
T PRK12548 124 VKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKD 160 (289)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 3578899999999999999888889997688888875
No 205
>PRK06953 short chain dehydrogenase; Provisional
Probab=93.32 E-value=0.55 Score=38.04 Aligned_cols=45 Identities=38% Similarity=0.452 Sum_probs=36.3
Q ss_pred CeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCC
Q 025712 180 TNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGAD 225 (249)
Q Consensus 180 ~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~ 225 (249)
++++|+| +|++|...++.....|+ +++.++++.++.+.++..+..
T Consensus 2 ~~vlvtG~sg~iG~~la~~L~~~G~-~v~~~~r~~~~~~~~~~~~~~ 47 (222)
T PRK06953 2 KTVLIVGASRGIGREFVRQYRADGW-RVIATARDAAALAALQALGAE 47 (222)
T ss_pred ceEEEEcCCCchhHHHHHHHHhCCC-EEEEEECCHHHHHHHHhccce
Confidence 4688887 79999998887777899 788888888887777766643
No 206
>PRK09072 short chain dehydrogenase; Provisional
Probab=93.31 E-value=0.65 Score=38.64 Aligned_cols=42 Identities=29% Similarity=0.459 Sum_probs=34.7
Q ss_pred CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHH
Q 025712 178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR 220 (249)
Q Consensus 178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~ 220 (249)
+++++||+| +|++|...+......|+ .|+++++++++.+.+.
T Consensus 4 ~~~~vlItG~s~~iG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~ 46 (263)
T PRK09072 4 KDKRVLLTGASGGIGQALAEALAAAGA-RLLLVGRNAEKLEALA 46 (263)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEECCHHHHHHHH
Confidence 467899998 79999998888888999 7888888887765553
No 207
>PRK07774 short chain dehydrogenase; Provisional
Probab=93.29 E-value=0.71 Score=37.92 Aligned_cols=41 Identities=20% Similarity=0.353 Sum_probs=33.1
Q ss_pred CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712 178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA 219 (249)
Q Consensus 178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~ 219 (249)
.+++++|.| +|++|...++.....|+ +++.+++++++.+.+
T Consensus 5 ~~k~vlItGasg~iG~~la~~l~~~g~-~vi~~~r~~~~~~~~ 46 (250)
T PRK07774 5 DDKVAIVTGAAGGIGQAYAEALAREGA-SVVVADINAEGAERV 46 (250)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence 468899998 69999998888888899 788888877655433
No 208
>PRK08265 short chain dehydrogenase; Provisional
Probab=93.28 E-value=0.7 Score=38.52 Aligned_cols=45 Identities=29% Similarity=0.393 Sum_probs=35.7
Q ss_pred CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH-HHcC
Q 025712 178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA-RNLG 223 (249)
Q Consensus 178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~~g 223 (249)
.+++++|.| +|++|.+.++.....|+ +|+.++++.++.+.+ ++++
T Consensus 5 ~~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~ 51 (261)
T PRK08265 5 AGKVAIVTGGATLIGAAVARALVAAGA-RVAIVDIDADNGAAVAASLG 51 (261)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhC
Confidence 468999998 69999999988888999 788888887765544 3444
No 209
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=93.25 E-value=0.31 Score=40.08 Aligned_cols=41 Identities=24% Similarity=0.255 Sum_probs=34.0
Q ss_pred CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712 178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA 219 (249)
Q Consensus 178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~ 219 (249)
+++++||.| +|++|...++.....|+ +|++++++.++.+.+
T Consensus 4 ~~~~vlItGasg~iG~~l~~~l~~~G~-~V~~~~r~~~~~~~~ 45 (251)
T PRK07231 4 EGKVAIVTGASSGIGEGIARRFAAEGA-RVVVTDRNEEAAERV 45 (251)
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence 467899998 69999998888888899 699998888766554
No 210
>PLN03013 cysteine synthase
Probab=93.24 E-value=1.1 Score=40.57 Aligned_cols=58 Identities=19% Similarity=0.331 Sum_probs=46.2
Q ss_pred HHcCCCCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEe--CChhHHHHHHHcCCCEEec
Q 025712 172 RRANVGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITD--VDVQRLSIARNLGADETAK 229 (249)
Q Consensus 172 ~~~~~~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~--~~~~~~~~~~~~ga~~vi~ 229 (249)
+...+++|.+.+|.. +|..|++....|+.+|++.++.+. .+++|.+.++.+||+.++.
T Consensus 167 ~~G~l~pG~~~VVeaSSGN~G~ALA~~a~~~G~~~~VvvP~~~s~~K~~~ira~GAeVi~v 227 (429)
T PLN03013 167 QKGFISPGKSVLVEPTSGNTGIGLAFIAASRGYRLILTMPASMSMERRVLLKAFGAELVLT 227 (429)
T ss_pred HcCCcCCCCcEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHcCCEEEEE
Confidence 445567886766765 899999999999999996666653 3678999999999987754
No 211
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=93.21 E-value=0.33 Score=39.91 Aligned_cols=41 Identities=20% Similarity=0.325 Sum_probs=33.9
Q ss_pred CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712 178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA 219 (249)
Q Consensus 178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~ 219 (249)
+++++||.| +|++|...++.+...|+ +++.+++++++.+.+
T Consensus 4 ~~~~~lItG~~g~iG~~~a~~l~~~G~-~vi~~~r~~~~~~~~ 45 (253)
T PRK08217 4 KDKVIVITGGAQGLGRAMAEYLAQKGA-KLALIDLNQEKLEEA 45 (253)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence 478999998 69999999999998999 788888887665433
No 212
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=93.19 E-value=0.32 Score=40.25 Aligned_cols=40 Identities=23% Similarity=0.336 Sum_probs=33.3
Q ss_pred CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHH
Q 025712 178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSI 218 (249)
Q Consensus 178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~ 218 (249)
.++++||.| +|++|.+.++.+...|+ +|+.+++++++.+.
T Consensus 9 ~~k~vlItGa~g~iG~~ia~~l~~~G~-~V~~~~r~~~~~~~ 49 (255)
T PRK07523 9 TGRRALVTGSSQGIGYALAEGLAQAGA-EVILNGRDPAKLAA 49 (255)
T ss_pred CCCEEEEECCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHH
Confidence 578999998 79999999888888899 78888888766543
No 213
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=93.16 E-value=0.57 Score=35.86 Aligned_cols=33 Identities=33% Similarity=0.364 Sum_probs=27.2
Q ss_pred CeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCC
Q 025712 180 TNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVD 212 (249)
Q Consensus 180 ~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~ 212 (249)
++++|.| ++++|...++.....|..+++.+.++
T Consensus 1 k~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~ 34 (167)
T PF00106_consen 1 KTVLITGASSGIGRALARALARRGARVVILTSRS 34 (167)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTTEEEEEEESS
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCceEEEEeeec
Confidence 4789998 79999998777777777688888888
No 214
>PRK07035 short chain dehydrogenase; Provisional
Probab=93.11 E-value=0.72 Score=38.02 Aligned_cols=41 Identities=17% Similarity=0.216 Sum_probs=33.6
Q ss_pred CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712 178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA 219 (249)
Q Consensus 178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~ 219 (249)
.+++++|.| +|++|.+.++.....|+ +|+.++++.++.+.+
T Consensus 7 ~~k~vlItGas~gIG~~l~~~l~~~G~-~Vi~~~r~~~~~~~~ 48 (252)
T PRK07035 7 TGKIALVTGASRGIGEAIAKLLAQQGA-HVIVSSRKLDGCQAV 48 (252)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence 467899998 79999999999888999 788888877665443
No 215
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=93.02 E-value=1.2 Score=36.54 Aligned_cols=35 Identities=14% Similarity=0.157 Sum_probs=29.5
Q ss_pred CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCCh
Q 025712 178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDV 213 (249)
Q Consensus 178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~ 213 (249)
.++++||.| +|++|.+.++.+...|+ +|+.++++.
T Consensus 4 ~~k~vlItGas~gIG~~ia~~l~~~G~-~vi~~~r~~ 39 (248)
T TIGR01832 4 EGKVALVTGANTGLGQGIAVGLAEAGA-DIVGAGRSE 39 (248)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCch
Confidence 478999998 69999998888888999 788887654
No 216
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=92.99 E-value=0.47 Score=42.28 Aligned_cols=44 Identities=18% Similarity=0.313 Sum_probs=38.2
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcC
Q 025712 180 TNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLG 223 (249)
Q Consensus 180 ~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~g 223 (249)
.++||+|+|.+|+.+++.+...|-.+|.+.+++.++.+.+.+..
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~ 45 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELI 45 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhc
Confidence 57899999999999999988888448999999999998887664
No 217
>PRK06198 short chain dehydrogenase; Provisional
Probab=92.99 E-value=0.9 Score=37.61 Aligned_cols=40 Identities=15% Similarity=0.220 Sum_probs=32.7
Q ss_pred CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHH
Q 025712 178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLS 217 (249)
Q Consensus 178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~ 217 (249)
.+++++|.| +|++|...++.+...|++.|++++++.++..
T Consensus 5 ~~k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~~~~~~ 45 (260)
T PRK06198 5 DGKVALVTGGTQGLGAAIARAFAERGAAGLVICGRNAEKGE 45 (260)
T ss_pred CCcEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCCHHHHH
Confidence 578899998 6999999999998999954888887766544
No 218
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=92.94 E-value=0.38 Score=39.45 Aligned_cols=47 Identities=21% Similarity=0.229 Sum_probs=36.8
Q ss_pred CCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCCh----------hHHHHHHHcC
Q 025712 177 GPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDV----------QRLSIARNLG 223 (249)
Q Consensus 177 ~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~----------~~~~~~~~~g 223 (249)
-.|.+++|.|.|.||+.+++++...|+..|.+.|.+. +..+..++.+
T Consensus 21 l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~ 77 (217)
T cd05211 21 LEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDGYIYDPGITTEELINYAVALG 77 (217)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCcEECCCCCHHHHHHHHHhhC
Confidence 3689999999999999999999999995555566665 5666665554
No 219
>KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only]
Probab=92.91 E-value=0.62 Score=39.52 Aligned_cols=43 Identities=26% Similarity=0.312 Sum_probs=36.0
Q ss_pred CCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHH
Q 025712 177 GPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR 220 (249)
Q Consensus 177 ~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~ 220 (249)
-.|+.++|.| +.++|.+.+......|+ +|+.+.+++++.+...
T Consensus 6 l~gkvalVTG~s~GIG~aia~~la~~Ga-~v~i~~r~~~~~~~~~ 49 (270)
T KOG0725|consen 6 LAGKVALVTGGSSGIGKAIALLLAKAGA-KVVITGRSEERLEETA 49 (270)
T ss_pred CCCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHH
Confidence 3678899998 78999999999999999 8899988888765553
No 220
>PRK08703 short chain dehydrogenase; Provisional
Probab=92.89 E-value=0.36 Score=39.54 Aligned_cols=41 Identities=22% Similarity=0.339 Sum_probs=34.0
Q ss_pred CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712 178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA 219 (249)
Q Consensus 178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~ 219 (249)
++++++|+| +|++|...++.....|+ +|+++++++++.+.+
T Consensus 5 ~~k~vlItG~sggiG~~la~~l~~~g~-~V~~~~r~~~~~~~~ 46 (239)
T PRK08703 5 SDKTILVTGASQGLGEQVAKAYAAAGA-TVILVARHQKKLEKV 46 (239)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHcCC-EEEEEeCChHHHHHH
Confidence 467999998 79999999988888999 788888888766544
No 221
>PRK07062 short chain dehydrogenase; Provisional
Probab=92.85 E-value=0.37 Score=40.17 Aligned_cols=41 Identities=32% Similarity=0.367 Sum_probs=34.1
Q ss_pred CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712 178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA 219 (249)
Q Consensus 178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~ 219 (249)
.+++++|.| ++++|.+.++.....|+ +|+.+++++++.+.+
T Consensus 7 ~~k~~lItGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~ 48 (265)
T PRK07062 7 EGRVAVVTGGSSGIGLATVELLLEAGA-SVAICGRDEERLASA 48 (265)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHH
Confidence 478999998 68999999999989999 788888887765543
No 222
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=92.84 E-value=0.85 Score=34.71 Aligned_cols=55 Identities=24% Similarity=0.405 Sum_probs=39.5
Q ss_pred HHHHcCC-CCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHH-HHHcCC
Q 025712 170 ACRRANV-GPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSI-ARNLGA 224 (249)
Q Consensus 170 ~l~~~~~-~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~-~~~~ga 224 (249)
++..... ..+++++|+|+|.+|...++.....|...+.+++++.++.+. .++++.
T Consensus 9 a~~~~~~~~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~ 65 (155)
T cd01065 9 ALEEAGIELKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGE 65 (155)
T ss_pred HHHhhCCCCCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhh
Confidence 3444333 457889999999999999888888864478888888777655 344453
No 223
>PRK07576 short chain dehydrogenase; Provisional
Probab=92.82 E-value=0.4 Score=40.13 Aligned_cols=40 Identities=20% Similarity=0.310 Sum_probs=33.4
Q ss_pred CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHH
Q 025712 178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSI 218 (249)
Q Consensus 178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~ 218 (249)
+++++||.| +|++|...++.....|+ .|+++++++++.+.
T Consensus 8 ~~k~ilItGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~ 48 (264)
T PRK07576 8 AGKNVVVVGGTSGINLGIAQAFARAGA-NVAVASRSQEKVDA 48 (264)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHH
Confidence 578999998 69999999988888999 78888887766543
No 224
>PRK08628 short chain dehydrogenase; Provisional
Probab=92.82 E-value=0.72 Score=38.20 Aligned_cols=43 Identities=21% Similarity=0.214 Sum_probs=33.4
Q ss_pred CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHH
Q 025712 178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN 221 (249)
Q Consensus 178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~ 221 (249)
+++++||+| +|++|...++.....|+ .++.+++++++.+..++
T Consensus 6 ~~~~ilItGasggiG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~ 49 (258)
T PRK08628 6 KDKVVIVTGGASGIGAAISLRLAEEGA-IPVIFGRSAPDDEFAEE 49 (258)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHcCC-cEEEEcCChhhHHHHHH
Confidence 468999998 69999998888888899 67777777776544443
No 225
>PRK07454 short chain dehydrogenase; Provisional
Probab=92.80 E-value=1.1 Score=36.66 Aligned_cols=42 Identities=24% Similarity=0.244 Sum_probs=34.5
Q ss_pred CCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712 177 GPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA 219 (249)
Q Consensus 177 ~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~ 219 (249)
...++++|.| +|++|...+..+...|. +|+++++++++.+.+
T Consensus 4 ~~~k~vlItG~sg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~ 46 (241)
T PRK07454 4 NSMPRALITGASSGIGKATALAFAKAGW-DLALVARSQDALEAL 46 (241)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence 3567899998 79999999999988999 788888887765544
No 226
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=92.79 E-value=1.2 Score=36.21 Aligned_cols=40 Identities=25% Similarity=0.341 Sum_probs=32.9
Q ss_pred CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHH
Q 025712 178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSI 218 (249)
Q Consensus 178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~ 218 (249)
+++++||+| +|++|...++.....|. .|+++.+++++.+.
T Consensus 4 ~~~~ilItGasg~iG~~l~~~l~~~g~-~v~~~~r~~~~~~~ 44 (246)
T PRK05653 4 QGKTALVTGASRGIGRAIALRLAADGA-KVVIYDSNEEAAEA 44 (246)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCChhHHHH
Confidence 457899998 69999999988888999 68888888776443
No 227
>PRK07024 short chain dehydrogenase; Provisional
Probab=92.77 E-value=0.94 Score=37.58 Aligned_cols=41 Identities=22% Similarity=0.177 Sum_probs=33.5
Q ss_pred CCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHH
Q 025712 179 ETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR 220 (249)
Q Consensus 179 g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~ 220 (249)
+++++|+| +|++|...+......|+ +++.++++.++.+.+.
T Consensus 2 ~~~vlItGas~gIG~~la~~l~~~G~-~v~~~~r~~~~~~~~~ 43 (257)
T PRK07024 2 PLKVFITGASSGIGQALAREYARQGA-TLGLVARRTDALQAFA 43 (257)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHH
Confidence 46899998 79999998888888899 7888888887766543
No 228
>TIGR01139 cysK cysteine synthase A. This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate.
Probab=92.76 E-value=2 Score=36.86 Aligned_cols=59 Identities=20% Similarity=0.296 Sum_probs=45.0
Q ss_pred HHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeC--ChhHHHHHHHcCCCEEecC
Q 025712 172 RRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDV--DVQRLSIARNLGADETAKV 230 (249)
Q Consensus 172 ~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~--~~~~~~~~~~~ga~~vi~~ 230 (249)
+.....+|++++-..+|..|.+....|+..|.+.++.+.. ++.|.++++.+||+.++.-
T Consensus 50 ~~g~~~~g~~vv~aSsGN~g~alA~~a~~~Gl~~~i~vp~~~~~~k~~~~~~~GA~v~~~~ 110 (298)
T TIGR01139 50 KRGLLKPGKTIVEPTSGNTGIALAMVAAARGYKLILTMPETMSIERRKLLKAYGAELVLTP 110 (298)
T ss_pred HcCCCCCCCEEEEeCCChhHHHHHHHHHHcCCeEEEEeCCccCHHHHHHHHHcCCEEEEEC
Confidence 3444567777644458999999999999999976666654 4678999999999877643
No 229
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=92.74 E-value=1 Score=37.91 Aligned_cols=35 Identities=23% Similarity=0.162 Sum_probs=28.5
Q ss_pred CCCeEEEEcC-C--hHHHHHHHHHHHcCCCeEEEEeCCh
Q 025712 178 PETNVMIMGS-G--PIGLVTLLAARAFGAPRIIITDVDV 213 (249)
Q Consensus 178 ~g~~vlI~G~-g--~vG~~ai~la~~~G~~~vi~~~~~~ 213 (249)
+++++||.|+ + ++|.+..+.....|+ +|+.+.+++
T Consensus 6 ~~k~~lVTGas~~~GIG~aiA~~la~~Ga-~V~~~~r~~ 43 (271)
T PRK06505 6 QGKRGLIMGVANDHSIAWGIAKQLAAQGA-ELAFTYQGE 43 (271)
T ss_pred CCCEEEEeCCCCCCcHHHHHHHHHHhCCC-EEEEecCch
Confidence 5788999984 3 899998888888999 777776654
No 230
>PLN02565 cysteine synthase
Probab=92.74 E-value=1.6 Score=38.06 Aligned_cols=55 Identities=27% Similarity=0.309 Sum_probs=44.1
Q ss_pred cCCCCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEe--CChhHHHHHHHcCCCEEe
Q 025712 174 ANVGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITD--VDVQRLSIARNLGADETA 228 (249)
Q Consensus 174 ~~~~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~--~~~~~~~~~~~~ga~~vi 228 (249)
..+.+|.+.+|.. +|..|++....|+..|.+.+|.+. .++.|++.++.+|++.++
T Consensus 61 g~~~~g~~~vv~aSsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~i~~~GA~V~~ 118 (322)
T PLN02565 61 GLIKPGESVLIEPTSGNTGIGLAFMAAAKGYKLIITMPASMSLERRIILLAFGAELVL 118 (322)
T ss_pred CCCCCCCcEEEEECCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEE
Confidence 4457887766765 799999999999999996666663 367999999999998765
No 231
>PLN02780 ketoreductase/ oxidoreductase
Probab=92.72 E-value=0.35 Score=41.99 Aligned_cols=41 Identities=12% Similarity=0.168 Sum_probs=34.3
Q ss_pred CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712 178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA 219 (249)
Q Consensus 178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~ 219 (249)
.|++++|.| +|++|.+.++.....|+ +|+.+++++++.+.+
T Consensus 52 ~g~~~lITGAs~GIG~alA~~La~~G~-~Vil~~R~~~~l~~~ 93 (320)
T PLN02780 52 YGSWALVTGPTDGIGKGFAFQLARKGL-NLVLVARNPDKLKDV 93 (320)
T ss_pred cCCEEEEeCCCcHHHHHHHHHHHHCCC-CEEEEECCHHHHHHH
Confidence 589999998 69999988777777899 788888998887654
No 232
>PRK09291 short chain dehydrogenase; Provisional
Probab=92.72 E-value=0.4 Score=39.60 Aligned_cols=40 Identities=15% Similarity=0.183 Sum_probs=32.4
Q ss_pred CCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712 179 ETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA 219 (249)
Q Consensus 179 g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~ 219 (249)
++++||+| +|++|...++.+...|+ .++++.++.++.+.+
T Consensus 2 ~~~vlVtGasg~iG~~ia~~l~~~G~-~v~~~~r~~~~~~~~ 42 (257)
T PRK09291 2 SKTILITGAGSGFGREVALRLARKGH-NVIAGVQIAPQVTAL 42 (257)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence 46899998 79999999999999999 788887776655443
No 233
>cd01562 Thr-dehyd Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen. Although the nitrogen atoms of most amino acids are transferred to alpha-ketoglutarate before removal, the alpha-amino group of threonine can be directly converted into NH4+. The direct deamination is catalyzed by threonine dehydratase, in which pyridoxal phosphate (PLP) is the prosthetic group. Threonine dehydratase is widely distributed in all three major phylogenetic divisions.
Probab=92.71 E-value=1.1 Score=38.38 Aligned_cols=66 Identities=17% Similarity=0.211 Sum_probs=45.1
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeC--ChhHHHHHHHcCCCEEecCCCCcccHHHHHHHHH
Q 025712 179 ETNVMIMGSGPIGLVTLLAARAFGAPRIIITDV--DVQRLSIARNLGADETAKVSTDIEMWGRYKMQWV 245 (249)
Q Consensus 179 g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~--~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~ 245 (249)
.+.++..++|..|.+....|+..|.+.++.+.. +++|.+.++.+|++.+.. ..+..+..+...++.
T Consensus 65 ~~~iv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~l~~~Ga~vi~~-~~~~~~~~~~a~~la 132 (304)
T cd01562 65 AKGVVAASAGNHAQGVAYAAKLLGIPATIVMPETAPAAKVDATRAYGAEVVLY-GEDFDEAEAKARELA 132 (304)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEe-CCCHHHHHHHHHHHH
Confidence 445555568999999999999999976666643 567899999999875543 332233334444443
No 234
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=92.70 E-value=1.2 Score=37.20 Aligned_cols=36 Identities=22% Similarity=0.314 Sum_probs=28.9
Q ss_pred CCCeEEEEc-C--ChHHHHHHHHHHHcCCCeEEEEeCChh
Q 025712 178 PETNVMIMG-S--GPIGLVTLLAARAFGAPRIIITDVDVQ 214 (249)
Q Consensus 178 ~g~~vlI~G-~--g~vG~~ai~la~~~G~~~vi~~~~~~~ 214 (249)
.++++||.| + +++|.+.++.....|+ +|+.++++++
T Consensus 9 ~~k~~lItGas~g~GIG~a~a~~la~~G~-~v~l~~r~~~ 47 (258)
T PRK07533 9 AGKRGLVVGIANEQSIAWGCARAFRALGA-ELAVTYLNDK 47 (258)
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHcCC-EEEEEeCChh
Confidence 478999998 4 3899998888888999 6877777654
No 235
>PRK12939 short chain dehydrogenase; Provisional
Probab=92.66 E-value=1.2 Score=36.45 Aligned_cols=41 Identities=15% Similarity=0.131 Sum_probs=33.5
Q ss_pred CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712 178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA 219 (249)
Q Consensus 178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~ 219 (249)
++++++|+| +|++|...+......|+ +++++++++++.+.+
T Consensus 6 ~~~~vlItGa~g~iG~~la~~l~~~G~-~v~~~~r~~~~~~~~ 47 (250)
T PRK12939 6 AGKRALVTGAARGLGAAFAEALAEAGA-TVAFNDGLAAEAREL 47 (250)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHcCC-EEEEEeCCHHHHHHH
Confidence 478999998 69999999988888999 788888777755443
No 236
>PLN02556 cysteine synthase/L-3-cyanoalanine synthase
Probab=92.66 E-value=1.8 Score=38.53 Aligned_cols=58 Identities=21% Similarity=0.320 Sum_probs=46.6
Q ss_pred HHcCCCCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEe--CChhHHHHHHHcCCCEEec
Q 025712 172 RRANVGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITD--VDVQRLSIARNLGADETAK 229 (249)
Q Consensus 172 ~~~~~~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~--~~~~~~~~~~~~ga~~vi~ 229 (249)
+...+++|.+.+|.+ +|..|.+....|+.+|++.++.+. .+.+|.+.++.+||+.++-
T Consensus 103 ~~G~i~pG~~~vV~aSsGN~G~alA~~a~~~G~~~~ivvp~~~~~~k~~~lr~~GA~Vi~~ 163 (368)
T PLN02556 103 KKNLITPGKTTLIEPTSGNMGISLAFMAAMKGYKMILTMPSYTSLERRVTMRAFGAELVLT 163 (368)
T ss_pred HcCCcCCCCCEEEEeCCchHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEE
Confidence 345577887777776 799999999999999997666664 3578999999999988763
No 237
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=92.66 E-value=0.63 Score=39.62 Aligned_cols=53 Identities=19% Similarity=0.399 Sum_probs=45.4
Q ss_pred HHHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHH----cCCC
Q 025712 171 CRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN----LGAD 225 (249)
Q Consensus 171 l~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~----~ga~ 225 (249)
++..++++|+++|=+|.|- |.+++..|+..|+ +|++++-+++..+++++ .|..
T Consensus 65 ~~kl~L~~G~~lLDiGCGW-G~l~~~aA~~y~v-~V~GvTlS~~Q~~~~~~r~~~~gl~ 121 (283)
T COG2230 65 LEKLGLKPGMTLLDIGCGW-GGLAIYAAEEYGV-TVVGVTLSEEQLAYAEKRIAARGLE 121 (283)
T ss_pred HHhcCCCCCCEEEEeCCCh-hHHHHHHHHHcCC-EEEEeeCCHHHHHHHHHHHHHcCCC
Confidence 3778999999999998776 7788999999999 89999999999888865 4654
No 238
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=92.61 E-value=0.94 Score=37.49 Aligned_cols=43 Identities=26% Similarity=0.324 Sum_probs=35.1
Q ss_pred CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHH
Q 025712 178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN 221 (249)
Q Consensus 178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~ 221 (249)
.++++||.| +|++|...++.....|+ +|+.++++.++.+.+.+
T Consensus 5 ~~~~vlItGas~~iG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~ 48 (257)
T PRK07067 5 QGKVALLTGAASGIGEAVAERYLAEGA-RVVIADIKPARARLAAL 48 (257)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHH
Confidence 367899998 79999999998888999 78888888877655543
No 239
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=92.56 E-value=0.44 Score=44.65 Aligned_cols=46 Identities=20% Similarity=0.228 Sum_probs=38.3
Q ss_pred HcCCCCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712 173 RANVGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA 219 (249)
Q Consensus 173 ~~~~~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~ 219 (249)
..+.+.|+++||.| +|++|.+.++.+...|+ .|+++.++.++.+.+
T Consensus 74 ~~~~~~gKvVLVTGATGgIG~aLAr~LLk~G~-~Vval~Rn~ekl~~l 120 (576)
T PLN03209 74 ELDTKDEDLAFVAGATGKVGSRTVRELLKLGF-RVRAGVRSAQRAESL 120 (576)
T ss_pred ccccCCCCEEEEECCCCHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHH
Confidence 45678999999998 69999999999888999 788888888776543
No 240
>TIGR01136 cysKM cysteine synthases. This model discriminates cysteine synthases (EC 2.5.1.47) (both CysK and CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblamnce to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded from the seed and score below the trusted cutoff.
Probab=92.56 E-value=2.2 Score=36.59 Aligned_cols=58 Identities=22% Similarity=0.326 Sum_probs=45.0
Q ss_pred HHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeC--ChhHHHHHHHcCCCEEec
Q 025712 172 RRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDV--DVQRLSIARNLGADETAK 229 (249)
Q Consensus 172 ~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~--~~~~~~~~~~~ga~~vi~ 229 (249)
+.....+|++++-..+|..|++....|+.+|.+.+|.+.. ++.|.+.++.+|++.+..
T Consensus 51 ~~g~~~~g~~vv~aSsGN~g~alA~~a~~~G~~~~i~vp~~~~~~k~~~~~~~GA~v~~~ 110 (299)
T TIGR01136 51 KRGLLKPGDTIIEATSGNTGIALAMVAAAKGYKLILTMPETMSLERRKLLRAYGAELILT 110 (299)
T ss_pred HcCCCCCCCEEEEeCCChHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHcCCEEEEe
Confidence 3344566776654458999999999999999977777754 568999999999987764
No 241
>PRK06500 short chain dehydrogenase; Provisional
Probab=92.55 E-value=1.2 Score=36.44 Aligned_cols=46 Identities=37% Similarity=0.423 Sum_probs=36.5
Q ss_pred CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH-HHcCC
Q 025712 178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA-RNLGA 224 (249)
Q Consensus 178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~~ga 224 (249)
++++++|.| +|++|...++.....|+ +++++++++++.+.+ ++++.
T Consensus 5 ~~k~vlItGasg~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~ 52 (249)
T PRK06500 5 QGKTALITGGTSGIGLETARQFLAEGA-RVAITGRDPASLEAARAELGE 52 (249)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEecCCHHHHHHHHHHhCC
Confidence 468999998 79999999999999999 788888877665544 34554
No 242
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=92.54 E-value=0.69 Score=42.05 Aligned_cols=35 Identities=23% Similarity=0.377 Sum_probs=30.2
Q ss_pred CCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEE-eCC
Q 025712 177 GPETNVMIMGSGPIGLVTLLAARAFGAPRIIIT-DVD 212 (249)
Q Consensus 177 ~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~-~~~ 212 (249)
-+|.+|+|.|.|.||..+++.+...|+ +|+++ |++
T Consensus 235 l~Gk~VaVqG~GnVg~~aa~~L~e~Ga-kVVavSD~~ 270 (454)
T PTZ00079 235 LEGKTVVVSGSGNVAQYAVEKLLQLGA-KVLTMSDSD 270 (454)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEEcCC
Confidence 378999999999999999999999999 77755 444
No 243
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=92.52 E-value=0.46 Score=39.44 Aligned_cols=41 Identities=24% Similarity=0.371 Sum_probs=34.2
Q ss_pred CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712 178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA 219 (249)
Q Consensus 178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~ 219 (249)
+++++||.| +|++|...++.....|+ +|+.++++.++.+.+
T Consensus 11 ~~k~ilItGa~g~IG~~la~~l~~~G~-~V~~~~r~~~~~~~~ 52 (259)
T PRK08213 11 SGKTALVTGGSRGLGLQIAEALGEAGA-RVVLSARKAEELEEA 52 (259)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHH
Confidence 578999998 79999998888888999 788888887765544
No 244
>PRK06482 short chain dehydrogenase; Provisional
Probab=92.50 E-value=1.1 Score=37.63 Aligned_cols=41 Identities=22% Similarity=0.111 Sum_probs=33.7
Q ss_pred CeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHH
Q 025712 180 TNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN 221 (249)
Q Consensus 180 ~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~ 221 (249)
+++||+| +|++|...++.....|. .++++.++.++.+.+++
T Consensus 3 k~vlVtGasg~IG~~la~~L~~~g~-~v~~~~r~~~~~~~~~~ 44 (276)
T PRK06482 3 KTWFITGASSGFGRGMTERLLARGD-RVAATVRRPDALDDLKA 44 (276)
T ss_pred CEEEEecCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH
Confidence 5789998 79999998888888899 78888888877766654
No 245
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=92.49 E-value=0.46 Score=43.57 Aligned_cols=53 Identities=21% Similarity=0.352 Sum_probs=42.0
Q ss_pred CCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCCh---------------------hHHHHHHHcCCCEEecC
Q 025712 177 GPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDV---------------------QRLSIARNLGADETAKV 230 (249)
Q Consensus 177 ~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~---------------------~~~~~~~~~ga~~vi~~ 230 (249)
..+++|+|+|+|..|+.+...++..|+ .|+..+..+ ...++++++|++...+.
T Consensus 139 ~~~~~V~IIG~GpaGl~aA~~l~~~G~-~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~ 212 (467)
T TIGR01318 139 PTGKRVAVIGAGPAGLACADILARAGV-QVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHLNC 212 (467)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCC-eEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEECCC
Confidence 368899999999999999999999999 577776543 34677888998766543
No 246
>PRK07063 short chain dehydrogenase; Provisional
Probab=92.48 E-value=0.46 Score=39.49 Aligned_cols=41 Identities=22% Similarity=0.249 Sum_probs=33.7
Q ss_pred CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712 178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA 219 (249)
Q Consensus 178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~ 219 (249)
.+++++|.| +|++|.+.++.....|+ +|+.+++++++.+.+
T Consensus 6 ~~k~vlVtGas~gIG~~~a~~l~~~G~-~vv~~~r~~~~~~~~ 47 (260)
T PRK07063 6 AGKVALVTGAAQGIGAAIARAFAREGA-AVALADLDAALAERA 47 (260)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence 478899998 79999999988888999 788888877765544
No 247
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=92.47 E-value=1.3 Score=37.98 Aligned_cols=44 Identities=27% Similarity=0.501 Sum_probs=34.9
Q ss_pred CCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHH
Q 025712 176 VGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN 221 (249)
Q Consensus 176 ~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~ 221 (249)
..++++||-.|+|. |..++.+++ .|+.++++++.++...+.+++
T Consensus 157 ~~~g~~VLDvGcGs-G~lai~aa~-~g~~~V~avDid~~al~~a~~ 200 (288)
T TIGR00406 157 DLKDKNVIDVGCGS-GILSIAALK-LGAAKVVGIDIDPLAVESARK 200 (288)
T ss_pred cCCCCEEEEeCCCh-hHHHHHHHH-cCCCeEEEEECCHHHHHHHHH
Confidence 45789999999877 777777665 577789999999887777754
No 248
>PRK08226 short chain dehydrogenase; Provisional
Probab=92.47 E-value=1 Score=37.39 Aligned_cols=41 Identities=22% Similarity=0.254 Sum_probs=32.8
Q ss_pred CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712 178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA 219 (249)
Q Consensus 178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~ 219 (249)
.+++++|+| +|++|.+.++.+...|+ +|+.++++.+..+..
T Consensus 5 ~~~~~lItG~s~giG~~la~~l~~~G~-~Vv~~~r~~~~~~~~ 46 (263)
T PRK08226 5 TGKTALITGALQGIGEGIARVFARHGA-NLILLDISPEIEKLA 46 (263)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEecCCHHHHHHH
Confidence 468999997 79999999988888999 788888776544433
No 249
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=92.41 E-value=1.1 Score=36.97 Aligned_cols=40 Identities=20% Similarity=0.258 Sum_probs=33.3
Q ss_pred eEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHH
Q 025712 181 NVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN 221 (249)
Q Consensus 181 ~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~ 221 (249)
+++|.| +|++|.+.+..+...|+ +|+++++++++.+.+.+
T Consensus 2 ~vlItGasg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~ 42 (248)
T PRK10538 2 IVLVTGATAGFGECITRRFIQQGH-KVIATGRRQERLQELKD 42 (248)
T ss_pred EEEEECCCchHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHH
Confidence 688888 79999999998888999 78888888877766543
No 250
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=92.40 E-value=0.95 Score=37.20 Aligned_cols=41 Identities=27% Similarity=0.423 Sum_probs=33.4
Q ss_pred CCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHH
Q 025712 179 ETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR 220 (249)
Q Consensus 179 g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~ 220 (249)
++++||.| +|.+|...+......|+ +|++++++.++.+.+.
T Consensus 1 ~~~vlItGa~g~lG~~l~~~l~~~g~-~v~~~~r~~~~~~~~~ 42 (255)
T TIGR01963 1 GKTALVTGAASGIGLAIALALAAAGA-NVVVNDLGEAGAEAAA 42 (255)
T ss_pred CCEEEEcCCcchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHH
Confidence 35799998 79999999988888999 7888888877665553
No 251
>CHL00194 ycf39 Ycf39; Provisional
Probab=92.39 E-value=0.62 Score=40.17 Aligned_cols=42 Identities=17% Similarity=0.352 Sum_probs=32.2
Q ss_pred eEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcC
Q 025712 181 NVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLG 223 (249)
Q Consensus 181 ~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~g 223 (249)
+|+|+| +|.+|...++.+...|. .|.++.++.++...+...|
T Consensus 2 kIlVtGatG~iG~~lv~~Ll~~g~-~V~~l~R~~~~~~~l~~~~ 44 (317)
T CHL00194 2 SLLVIGATGTLGRQIVRQALDEGY-QVRCLVRNLRKASFLKEWG 44 (317)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCC-eEEEEEcChHHhhhHhhcC
Confidence 689998 79999999998888998 7888877766554443333
No 252
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=92.36 E-value=0.88 Score=36.32 Aligned_cols=42 Identities=24% Similarity=0.487 Sum_probs=34.0
Q ss_pred CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHH
Q 025712 178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR 220 (249)
Q Consensus 178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~ 220 (249)
++.+++|.| +|++|...+..+...|. .++.+.++.++.+.+.
T Consensus 27 ~~~~vlVlGgtG~iG~~~a~~l~~~g~-~V~l~~R~~~~~~~l~ 69 (194)
T cd01078 27 KGKTAVVLGGTGPVGQRAAVLLAREGA-RVVLVGRDLERAQKAA 69 (194)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHH
Confidence 578999998 69999988888888887 7888888877765543
No 253
>PRK09186 flagellin modification protein A; Provisional
Probab=92.33 E-value=0.47 Score=39.15 Aligned_cols=41 Identities=27% Similarity=0.395 Sum_probs=33.7
Q ss_pred CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712 178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA 219 (249)
Q Consensus 178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~ 219 (249)
+++++||.| +|++|...+......|+ +++.+.++.++.+.+
T Consensus 3 ~~k~vlItGas~giG~~~a~~l~~~g~-~v~~~~r~~~~~~~~ 44 (256)
T PRK09186 3 KGKTILITGAGGLIGSALVKAILEAGG-IVIAADIDKEALNEL 44 (256)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEecChHHHHHH
Confidence 578999998 69999998888888999 788888877765543
No 254
>PRK07478 short chain dehydrogenase; Provisional
Probab=92.32 E-value=0.49 Score=39.15 Aligned_cols=41 Identities=20% Similarity=0.200 Sum_probs=33.6
Q ss_pred CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712 178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA 219 (249)
Q Consensus 178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~ 219 (249)
.+++++|.| +|++|...+......|+ +++.+++++++.+.+
T Consensus 5 ~~k~~lItGas~giG~~ia~~l~~~G~-~v~~~~r~~~~~~~~ 46 (254)
T PRK07478 5 NGKVAIITGASSGIGRAAAKLFAREGA-KVVVGARRQAELDQL 46 (254)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence 467899998 79999998888888999 788888887766544
No 255
>PLN02253 xanthoxin dehydrogenase
Probab=92.32 E-value=1.1 Score=37.75 Aligned_cols=40 Identities=18% Similarity=0.181 Sum_probs=32.1
Q ss_pred CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHH
Q 025712 178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSI 218 (249)
Q Consensus 178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~ 218 (249)
.++++||.| +|++|.+.++.....|+ +|+++++++++.+.
T Consensus 17 ~~k~~lItGas~gIG~~la~~l~~~G~-~v~~~~~~~~~~~~ 57 (280)
T PLN02253 17 LGKVALVTGGATGIGESIVRLFHKHGA-KVCIVDLQDDLGQN 57 (280)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHH
Confidence 478899998 79999998888888899 78888777655443
No 256
>PRK06914 short chain dehydrogenase; Provisional
Probab=92.32 E-value=1.1 Score=37.65 Aligned_cols=40 Identities=23% Similarity=0.249 Sum_probs=32.7
Q ss_pred CCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712 179 ETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA 219 (249)
Q Consensus 179 g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~ 219 (249)
++++||+| +|++|...+......|+ .|++++++.++.+.+
T Consensus 3 ~k~~lItGasg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~ 43 (280)
T PRK06914 3 KKIAIVTGASSGFGLLTTLELAKKGY-LVIATMRNPEKQENL 43 (280)
T ss_pred CCEEEEECCCchHHHHHHHHHHhCCC-EEEEEeCCHHHHHHH
Confidence 57889998 79999999988888899 788888777665544
No 257
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=92.28 E-value=1 Score=37.42 Aligned_cols=44 Identities=20% Similarity=0.245 Sum_probs=33.3
Q ss_pred CCCeEEEEc-C--ChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHc
Q 025712 178 PETNVMIMG-S--GPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNL 222 (249)
Q Consensus 178 ~g~~vlI~G-~--g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ 222 (249)
.+++++|.| + +++|.+..+.....|+ +|+.+.++++..+.++++
T Consensus 6 ~~k~~lItGas~~~gIG~a~a~~la~~G~-~Vi~~~r~~~~~~~~~~~ 52 (252)
T PRK06079 6 SGKKIVVMGVANKRSIAWGCAQAIKDQGA-TVIYTYQNDRMKKSLQKL 52 (252)
T ss_pred CCCEEEEeCCCCCCchHHHHHHHHHHCCC-EEEEecCchHHHHHHHhh
Confidence 578999998 4 5999998888888999 788887765444445554
No 258
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=92.26 E-value=0.41 Score=39.04 Aligned_cols=55 Identities=22% Similarity=0.243 Sum_probs=43.3
Q ss_pred CCCCeEEEEc--CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHH-HcCC-CEEecCCC
Q 025712 177 GPETNVMIMG--SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR-NLGA-DETAKVST 232 (249)
Q Consensus 177 ~~g~~vlI~G--~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~-~~ga-~~vi~~~~ 232 (249)
+..+.|||.| .|++|.+...=...-|+ .|+++.+..+..+-+. ++|+ .+-.|.++
T Consensus 5 ~~~k~VlItgcs~GGIG~ala~ef~~~G~-~V~AtaR~~e~M~~L~~~~gl~~~kLDV~~ 63 (289)
T KOG1209|consen 5 SQPKKVLITGCSSGGIGYALAKEFARNGY-LVYATARRLEPMAQLAIQFGLKPYKLDVSK 63 (289)
T ss_pred cCCCeEEEeecCCcchhHHHHHHHHhCCe-EEEEEccccchHhhHHHhhCCeeEEeccCC
Confidence 3567899986 49999987777777899 8999999999988887 7885 44555555
No 259
>PRK08862 short chain dehydrogenase; Provisional
Probab=92.25 E-value=1.4 Score=36.15 Aligned_cols=41 Identities=20% Similarity=0.266 Sum_probs=33.3
Q ss_pred CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712 178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA 219 (249)
Q Consensus 178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~ 219 (249)
.+++++|.| ++++|.+...-....|+ +|+.+.+++++.+.+
T Consensus 4 ~~k~~lVtGas~GIG~aia~~la~~G~-~V~~~~r~~~~l~~~ 45 (227)
T PRK08862 4 KSSIILITSAGSVLGRTISCHFARLGA-TLILCDQDQSALKDT 45 (227)
T ss_pred CCeEEEEECCccHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHH
Confidence 478999998 68999998888888999 788888888776543
No 260
>PRK06125 short chain dehydrogenase; Provisional
Probab=92.24 E-value=0.51 Score=39.19 Aligned_cols=41 Identities=27% Similarity=0.293 Sum_probs=33.9
Q ss_pred CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712 178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA 219 (249)
Q Consensus 178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~ 219 (249)
.+++++|.| ++++|...++.....|+ +|++++++.++.+.+
T Consensus 6 ~~k~vlItG~~~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~ 47 (259)
T PRK06125 6 AGKRVLITGASKGIGAAAAEAFAAEGC-HLHLVARDADALEAL 47 (259)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHH
Confidence 478999998 68999998888888999 888888887766543
No 261
>PRK05884 short chain dehydrogenase; Provisional
Probab=92.22 E-value=1.1 Score=36.47 Aligned_cols=44 Identities=20% Similarity=0.381 Sum_probs=34.1
Q ss_pred eEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH-HHcCCC
Q 025712 181 NVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA-RNLGAD 225 (249)
Q Consensus 181 ~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~~ga~ 225 (249)
+++|.| +|++|.+.++.....|+ +++.+++++++.+.+ +++++.
T Consensus 2 ~vlItGas~giG~~ia~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~ 47 (223)
T PRK05884 2 EVLVTGGDTDLGRTIAEGFRNDGH-KVTLVGARRDDLEVAAKELDVD 47 (223)
T ss_pred eEEEEeCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhccCc
Confidence 578887 69999999988888899 788888888776654 344443
No 262
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=92.16 E-value=0.52 Score=44.24 Aligned_cols=47 Identities=17% Similarity=0.307 Sum_probs=41.3
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEE
Q 025712 180 TNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADET 227 (249)
Q Consensus 180 ~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~v 227 (249)
++++|.|.|.+|+..++..+..|. .++++|.++++.+.+++.|...+
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~-~vvvId~d~~~~~~~~~~g~~~i 464 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGI-PLVVIETSRTRVDELRERGIRAV 464 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHHCCCeEE
Confidence 678999999999999999999998 79999999999999988775443
No 263
>PRK06196 oxidoreductase; Provisional
Probab=92.16 E-value=1.3 Score=38.10 Aligned_cols=41 Identities=22% Similarity=0.246 Sum_probs=33.6
Q ss_pred CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712 178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA 219 (249)
Q Consensus 178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~ 219 (249)
.+++++|+| +|++|.+.+......|+ +|+++.++.++.+.+
T Consensus 25 ~~k~vlITGasggIG~~~a~~L~~~G~-~Vv~~~R~~~~~~~~ 66 (315)
T PRK06196 25 SGKTAIVTGGYSGLGLETTRALAQAGA-HVIVPARRPDVAREA 66 (315)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence 468999998 69999998888888999 788888887765543
No 264
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=92.14 E-value=0.76 Score=37.88 Aligned_cols=43 Identities=26% Similarity=0.342 Sum_probs=34.8
Q ss_pred HHHHcC-CCCCCeEEEEcCChHHHHHHHHHHHcCCC--eEEEEeCC
Q 025712 170 ACRRAN-VGPETNVMIMGSGPIGLVTLLAARAFGAP--RIIITDVD 212 (249)
Q Consensus 170 ~l~~~~-~~~g~~vlI~G~g~vG~~ai~la~~~G~~--~vi~~~~~ 212 (249)
+++... --.+++++|+|+|+.|.+++..+...|++ +++.++++
T Consensus 15 al~~~g~~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~ 60 (226)
T cd05311 15 ALKLVGKKIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSK 60 (226)
T ss_pred HHHHhCCCccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCC
Confidence 344433 24578999999999999999988899997 89999887
No 265
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=92.14 E-value=1.4 Score=36.48 Aligned_cols=40 Identities=13% Similarity=0.303 Sum_probs=32.1
Q ss_pred CCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712 179 ETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA 219 (249)
Q Consensus 179 g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~ 219 (249)
++++||.| +|++|.+.+......|+ +++.++++.++.+.+
T Consensus 2 ~k~ilItG~~~~IG~~la~~l~~~g~-~vi~~~r~~~~~~~~ 42 (259)
T PRK12384 2 NQVAVVIGGGQTLGAFLCHGLAEEGY-RVAVADINSEKAANV 42 (259)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHH
Confidence 56899998 69999998888888899 788888877655433
No 266
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=92.12 E-value=0.99 Score=37.40 Aligned_cols=42 Identities=29% Similarity=0.328 Sum_probs=32.5
Q ss_pred CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHH
Q 025712 178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR 220 (249)
Q Consensus 178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~ 220 (249)
.++++||.| +|++|.+.++.....|+ +|+.+++++...+..+
T Consensus 7 ~~k~vlVtGas~gIG~~la~~l~~~G~-~v~~~~r~~~~~~~~~ 49 (260)
T PRK12823 7 AGKVVVVTGAAQGIGRGVALRAAAEGA-RVVLVDRSELVHEVAA 49 (260)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCchHHHHHHH
Confidence 468899998 79999999988888999 7888887654333333
No 267
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=92.10 E-value=1.4 Score=36.73 Aligned_cols=35 Identities=20% Similarity=0.196 Sum_probs=27.5
Q ss_pred CCCeEEEEcC-C--hHHHHHHHHHHHcCCCeEEEEeCCh
Q 025712 178 PETNVMIMGS-G--PIGLVTLLAARAFGAPRIIITDVDV 213 (249)
Q Consensus 178 ~g~~vlI~G~-g--~vG~~ai~la~~~G~~~vi~~~~~~ 213 (249)
.+++++|.|+ + ++|.+..+.....|+ +|+.+.+++
T Consensus 7 ~~k~~lITGas~~~GIG~a~a~~la~~G~-~v~~~~r~~ 44 (260)
T PRK06603 7 QGKKGLITGIANNMSISWAIAQLAKKHGA-ELWFTYQSE 44 (260)
T ss_pred CCcEEEEECCCCCcchHHHHHHHHHHcCC-EEEEEeCch
Confidence 5788999984 4 799998888778899 677776663
No 268
>cd06448 L-Ser-dehyd Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- , D-serine, or L-threonine to pyruvate/ketobutyrate and ammonia.
Probab=92.08 E-value=1.3 Score=38.41 Aligned_cols=53 Identities=25% Similarity=0.330 Sum_probs=42.2
Q ss_pred CCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeC--ChhHHHHHHHcCCCEEec
Q 025712 177 GPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDV--DVQRLSIARNLGADETAK 229 (249)
Q Consensus 177 ~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~--~~~~~~~~~~~ga~~vi~ 229 (249)
.++++|+..++|..|.+....|+.+|++.++.+.. ++.|.+.++.+||+.+..
T Consensus 49 ~~~~~vv~aSsGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~l~~~GA~v~~~ 103 (316)
T cd06448 49 NECVHVVCSSGGNAGLAAAYAARKLGVPCTIVVPESTKPRVVEKLRDEGATVVVH 103 (316)
T ss_pred ccCCeEEEeCCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEE
Confidence 34666665678999999999999999976666643 678899999999987653
No 269
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=92.06 E-value=0.65 Score=37.27 Aligned_cols=49 Identities=20% Similarity=0.364 Sum_probs=40.2
Q ss_pred HHHcCCCCCCeEEEEcCChHHHHHHHHHHHcC-CCeEEEEeCChhHHHHHH
Q 025712 171 CRRANVGPETNVMIMGSGPIGLVTLLAARAFG-APRIIITDVDVQRLSIAR 220 (249)
Q Consensus 171 l~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G-~~~vi~~~~~~~~~~~~~ 220 (249)
+....+.+++++|-+|+|. |..++.+++..+ ..++++++.+++..+.++
T Consensus 33 l~~l~~~~~~~vlDlG~Gt-G~~s~~~a~~~~~~~~v~avD~~~~~~~~a~ 82 (198)
T PRK00377 33 LSKLRLRKGDMILDIGCGT-GSVTVEASLLVGETGKVYAVDKDEKAINLTR 82 (198)
T ss_pred HHHcCCCCcCEEEEeCCcC-CHHHHHHHHHhCCCCEEEEEECCHHHHHHHH
Confidence 4567889999999999887 888889988764 237999999998888664
No 270
>PRK06172 short chain dehydrogenase; Provisional
Probab=92.01 E-value=0.56 Score=38.73 Aligned_cols=39 Identities=26% Similarity=0.360 Sum_probs=32.3
Q ss_pred CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHH
Q 025712 178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLS 217 (249)
Q Consensus 178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~ 217 (249)
.+++++|.| +|++|...++.....|+ +|+.+++++++.+
T Consensus 6 ~~k~ilItGas~~iG~~ia~~l~~~G~-~v~~~~r~~~~~~ 45 (253)
T PRK06172 6 SGKVALVTGGAAGIGRATALAFAREGA-KVVVADRDAAGGE 45 (253)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHH
Confidence 478999998 69999998888888899 7888888876643
No 271
>PRK10717 cysteine synthase A; Provisional
Probab=91.96 E-value=3.2 Score=36.18 Aligned_cols=58 Identities=22% Similarity=0.303 Sum_probs=44.9
Q ss_pred HHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeC--ChhHHHHHHHcCCCEEec
Q 025712 172 RRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDV--DVQRLSIARNLGADETAK 229 (249)
Q Consensus 172 ~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~--~~~~~~~~~~~ga~~vi~ 229 (249)
.....+++++|+...+|..|++....|+.+|.+.++.+.. ++.|.+.++.+||+.+..
T Consensus 57 ~~g~~~~g~~vv~aSsGN~g~alA~~a~~~G~~~~vv~p~~~~~~k~~~~~~~GA~V~~~ 116 (330)
T PRK10717 57 KRGLLKPGGTIVEGTAGNTGIGLALVAAARGYKTVIVMPETQSQEKKDLLRALGAELVLV 116 (330)
T ss_pred HcCCCCCCCEEEEeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEe
Confidence 4444567777665568999999999999999976666643 567899999999987654
No 272
>PF11017 DUF2855: Protein of unknown function (DUF2855); InterPro: IPR021276 This family of proteins has no known function.
Probab=91.95 E-value=3 Score=36.10 Aligned_cols=143 Identities=11% Similarity=0.050 Sum_probs=74.6
Q ss_pred EEEEEecCCCCCCCCCCeEEEccCcCCCCCccccCCCCCCCcCccccCC----CCCCCceeEEEEecCCceEECCCCCCh
Q 025712 80 GIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGS----PPTNGSLAHKVVHPAKLCYKLPDNVSL 155 (249)
Q Consensus 80 G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~g~~~~~~~~~~~~~~~ip~~~~~ 155 (249)
++|++ +.++.+.+|.|+..+.-... + ..-.+.--..-++.+. ..-...|-+|..+..+..+. +..+.
T Consensus 39 A~Vve--S~~~~i~vGerlyGy~P~as----h-l~l~p~~v~~~~f~d~s~hR~~l~~~YN~Y~r~~~d~~y~--~~~e~ 109 (314)
T PF11017_consen 39 ATVVE--SRHPGIAVGERLYGYFPMAS----H-LVLEPGKVSPGGFRDVSPHRAGLPPIYNQYLRVSADPAYD--PERED 109 (314)
T ss_pred EEEEe--eCCCCccCccEEEeeccccc----e-eEEeccccCCCccccChhhhCcCchhhhceeecCCCcccC--cchhH
Confidence 56666 78888999999975311000 0 0000000000011110 01123444555554433221 11222
Q ss_pred hhhccccchHHHHHHHHH---cCCCCCCeEEEEc-CChHHHHHHHHHH-HcCCCeEEEEeCChhHHHHHHHcCC-CEEec
Q 025712 156 EEGAMCEPLSVGVHACRR---ANVGPETNVMIMG-SGPIGLVTLLAAR-AFGAPRIIITDVDVQRLSIARNLGA-DETAK 229 (249)
Q Consensus 156 ~~aa~~~~~~~a~~~l~~---~~~~~g~~vlI~G-~g~vG~~ai~la~-~~G~~~vi~~~~~~~~~~~~~~~ga-~~vi~ 229 (249)
.++.+-+.+.|.|..-+. .+.-..+.|+|.+ ++-.++...+..+ ..+..++|+++ ++.+.+..+.+|. +.|+.
T Consensus 110 ~~~LlrPLf~Tsfll~d~l~~~~~~ga~~vvl~SASSKTA~glA~~L~~~~~~~~~vglT-S~~N~~Fve~lg~Yd~V~~ 188 (314)
T PF11017_consen 110 WQMLLRPLFITSFLLDDFLFDNDFFGAAQVVLSSASSKTAIGLAYCLKKQRGPPKVVGLT-SARNVAFVESLGCYDEVLT 188 (314)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccCCccEEEEeccchHHHHHHHHHhhccCCCceEEEEe-cCcchhhhhccCCceEEee
Confidence 233343456676654322 2233446666665 6778888777777 55555899996 6666679999994 77777
Q ss_pred CCC
Q 025712 230 VST 232 (249)
Q Consensus 230 ~~~ 232 (249)
|++
T Consensus 189 Yd~ 191 (314)
T PF11017_consen 189 YDD 191 (314)
T ss_pred hhh
Confidence 664
No 273
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=91.95 E-value=0.58 Score=38.74 Aligned_cols=40 Identities=20% Similarity=0.293 Sum_probs=32.8
Q ss_pred CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHH
Q 025712 178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSI 218 (249)
Q Consensus 178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~ 218 (249)
.++++||.| +|++|...++.+...|+ .|+++.+++++.+.
T Consensus 6 ~~~~vlItGasg~iG~~la~~l~~~G~-~v~~~~r~~~~~~~ 46 (262)
T PRK13394 6 NGKTAVVTGAASGIGKEIALELARAGA-AVAIADLNQDGANA 46 (262)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-eEEEEeCChHHHHH
Confidence 478999998 69999999998889999 68888887755443
No 274
>PRK05854 short chain dehydrogenase; Provisional
Probab=91.91 E-value=0.57 Score=40.41 Aligned_cols=40 Identities=20% Similarity=0.225 Sum_probs=32.7
Q ss_pred CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHH
Q 025712 178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSI 218 (249)
Q Consensus 178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~ 218 (249)
.+++++|+| ++++|.+.+......|+ +|+.+.++.++.+.
T Consensus 13 ~gk~~lITGas~GIG~~~a~~La~~G~-~Vil~~R~~~~~~~ 53 (313)
T PRK05854 13 SGKRAVVTGASDGLGLGLARRLAAAGA-EVILPVRNRAKGEA 53 (313)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHH
Confidence 478999998 79999998888888999 78888888776543
No 275
>PRK07109 short chain dehydrogenase; Provisional
Probab=91.87 E-value=0.59 Score=40.80 Aligned_cols=41 Identities=24% Similarity=0.272 Sum_probs=34.0
Q ss_pred CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712 178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA 219 (249)
Q Consensus 178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~ 219 (249)
.+++++|+| +|++|...++.+...|+ +|+++++++++.+.+
T Consensus 7 ~~k~vlITGas~gIG~~la~~la~~G~-~Vvl~~R~~~~l~~~ 48 (334)
T PRK07109 7 GRQVVVITGASAGVGRATARAFARRGA-KVVLLARGEEGLEAL 48 (334)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHH
Confidence 467899998 79999999998888999 788888888766543
No 276
>PRK07904 short chain dehydrogenase; Provisional
Probab=91.86 E-value=1.6 Score=36.32 Aligned_cols=39 Identities=21% Similarity=0.368 Sum_probs=30.4
Q ss_pred CCCCCeEEEEc-CChHHHHHHHHHHHc-CCCeEEEEeCChhH
Q 025712 176 VGPETNVMIMG-SGPIGLVTLLAARAF-GAPRIIITDVDVQR 215 (249)
Q Consensus 176 ~~~g~~vlI~G-~g~vG~~ai~la~~~-G~~~vi~~~~~~~~ 215 (249)
+..++++||.| +|++|.+.++-+... |+ +|+++++++++
T Consensus 5 ~~~~~~vlItGas~giG~~la~~l~~~gg~-~V~~~~r~~~~ 45 (253)
T PRK07904 5 VGNPQTILLLGGTSEIGLAICERYLKNAPA-RVVLAALPDDP 45 (253)
T ss_pred cCCCcEEEEEcCCcHHHHHHHHHHHhcCCC-eEEEEeCCcch
Confidence 45678999998 799999988766666 47 78888777664
No 277
>PRK06194 hypothetical protein; Provisional
Probab=91.84 E-value=0.58 Score=39.49 Aligned_cols=41 Identities=24% Similarity=0.398 Sum_probs=32.7
Q ss_pred CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712 178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA 219 (249)
Q Consensus 178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~ 219 (249)
.++++||+| +|++|...++.....|+ .|++++++.++.+.+
T Consensus 5 ~~k~vlVtGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~ 46 (287)
T PRK06194 5 AGKVAVITGAASGFGLAFARIGAALGM-KLVLADVQQDALDRA 46 (287)
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHCCC-EEEEEeCChHHHHHH
Confidence 367899998 79999999888888999 788888776554433
No 278
>PRK08264 short chain dehydrogenase; Validated
Probab=91.82 E-value=0.81 Score=37.34 Aligned_cols=40 Identities=20% Similarity=0.257 Sum_probs=32.6
Q ss_pred CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHH
Q 025712 178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLS 217 (249)
Q Consensus 178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~ 217 (249)
.+++++|+| +|++|...++.+...|+++|++++++.++.+
T Consensus 5 ~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~~~~~ 45 (238)
T PRK08264 5 KGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDPESVT 45 (238)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecChhhhh
Confidence 467899997 7999999999888899856888877766544
No 279
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=91.81 E-value=0.63 Score=38.47 Aligned_cols=40 Identities=15% Similarity=0.290 Sum_probs=33.2
Q ss_pred CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHH
Q 025712 178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSI 218 (249)
Q Consensus 178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~ 218 (249)
++++++|.| +|++|...+......|+ .++.++++.++.+.
T Consensus 10 ~~k~ilItGas~~IG~~la~~l~~~G~-~v~~~~r~~~~~~~ 50 (256)
T PRK06124 10 AGQVALVTGSARGLGFEIARALAGAGA-HVLVNGRNAATLEA 50 (256)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcCC-eEEEEeCCHHHHHH
Confidence 588999998 79999998888888899 78888888766444
No 280
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=91.80 E-value=0.62 Score=38.42 Aligned_cols=41 Identities=27% Similarity=0.412 Sum_probs=33.4
Q ss_pred CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712 178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA 219 (249)
Q Consensus 178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~ 219 (249)
.++++||.| +|.+|...++.....|+ ++++++++.++.+.+
T Consensus 3 ~~~~vlItG~sg~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~ 44 (258)
T PRK12429 3 KGKVALVTGAASGIGLEIALALAKEGA-KVVIADLNDEAAAAA 44 (258)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHH
Confidence 467999998 79999998888888899 788888887765443
No 281
>PRK06483 dihydromonapterin reductase; Provisional
Probab=91.80 E-value=1.5 Score=35.69 Aligned_cols=45 Identities=24% Similarity=0.293 Sum_probs=33.3
Q ss_pred CCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhH-HHHHHHcCC
Q 025712 179 ETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQR-LSIARNLGA 224 (249)
Q Consensus 179 g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~-~~~~~~~ga 224 (249)
++++||.| +|++|.+..+.....|+ +|+++++++++ .+.+++.|+
T Consensus 2 ~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~ 48 (236)
T PRK06483 2 PAPILITGAGQRIGLALAWHLLAQGQ-PVIVSYRTHYPAIDGLRQAGA 48 (236)
T ss_pred CceEEEECCCChHHHHHHHHHHHCCC-eEEEEeCCchhHHHHHHHcCC
Confidence 46899998 69999999988888999 78777766543 344445553
No 282
>PRK08198 threonine dehydratase; Provisional
Probab=91.76 E-value=2.2 Score=38.30 Aligned_cols=51 Identities=18% Similarity=0.243 Sum_probs=40.7
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeC--ChhHHHHHHHcCCCEEec
Q 025712 179 ETNVMIMGSGPIGLVTLLAARAFGAPRIIITDV--DVQRLSIARNLGADETAK 229 (249)
Q Consensus 179 g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~--~~~~~~~~~~~ga~~vi~ 229 (249)
++.|+..++|..|++....|+.+|.+.+|.+.. +.+|.+.++.+||+.++.
T Consensus 70 ~~~vv~aSsGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~Vi~~ 122 (404)
T PRK08198 70 ARGVVAASAGNHAQGVAYAASLLGIKATIVMPETAPLSKVKATRSYGAEVVLH 122 (404)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEE
Confidence 455555568999999999999999977777754 558889999999977653
No 283
>TIGR02035 D_Ser_am_lyase D-serine ammonia-lyase. This family consists of D-serine ammonia-lyase (EC 4.3.1.18), a pyridoxal-phosphate enzyme that converts D-serine to pyruvate and NH3. This enzyme is also called D-serine dehydratase and D-serine deaminase and was previously designated EC 4.2.1.14. It is homologous to an enzyme that acts on threonine and may itself act weakly on threonine.
Probab=91.75 E-value=1.7 Score=39.49 Aligned_cols=64 Identities=14% Similarity=0.128 Sum_probs=45.8
Q ss_pred eEEEEc-CChHHHHHHHHHHHcCCCeEEEEe--CChhHHHHHHHcCCCEEecCCCCcccHHHHHHHHH
Q 025712 181 NVMIMG-SGPIGLVTLLAARAFGAPRIIITD--VDVQRLSIARNLGADETAKVSTDIEMWGRYKMQWV 245 (249)
Q Consensus 181 ~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~--~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~ 245 (249)
+-+|.+ +|..|+.....|+.+|++.+|.+. .+..|.+.++.+||+.+.. ..+..+..+..+++.
T Consensus 153 ~~Vv~aSsGN~G~slA~~Aa~lG~~~~IvmP~~a~~~K~~~ir~~GAeVv~~-~~~~~~a~~~A~~la 219 (431)
T TIGR02035 153 YSIAVGSTGNLGLSIGIISAALGFQVTVHMSADAKQWKKDKLRSKGVTVVEY-ESDYGVAVEEGRKNA 219 (431)
T ss_pred ceEEEECccHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEE-CCCHHHHHHHHHHHH
Confidence 345555 799999999999999997777774 4668999999999877654 322234444444443
No 284
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=91.74 E-value=1.8 Score=35.49 Aligned_cols=41 Identities=20% Similarity=0.304 Sum_probs=33.4
Q ss_pred CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712 178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA 219 (249)
Q Consensus 178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~ 219 (249)
+++++||.| +|++|...++.....|+ .|+.++++.++...+
T Consensus 2 ~~~~ilItGas~~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~ 43 (250)
T TIGR03206 2 KDKTAIVTGGGGGIGGATCRRFAEEGA-KVAVFDLNREAAEKV 43 (250)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEecCCHHHHHHH
Confidence 468899998 79999999988888999 788887777665444
No 285
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=91.73 E-value=0.63 Score=38.29 Aligned_cols=42 Identities=19% Similarity=0.309 Sum_probs=34.1
Q ss_pred CCCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHH
Q 025712 176 VGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSI 218 (249)
Q Consensus 176 ~~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~ 218 (249)
..++++++|.| +|++|...++.....|+ .|++++++.++.+.
T Consensus 9 ~~~~k~vlItG~~g~iG~~la~~l~~~G~-~Vi~~~r~~~~~~~ 51 (247)
T PRK08945 9 LLKDRIILVTGAGDGIGREAALTYARHGA-TVILLGRTEEKLEA 51 (247)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCC-cEEEEeCCHHHHHH
Confidence 45789999998 79999998888888899 78888887766433
No 286
>PRK05717 oxidoreductase; Validated
Probab=91.72 E-value=1.8 Score=35.80 Aligned_cols=45 Identities=27% Similarity=0.331 Sum_probs=34.5
Q ss_pred CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH-HHcC
Q 025712 178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA-RNLG 223 (249)
Q Consensus 178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~~g 223 (249)
.|++++|+| +|++|...+......|+ +|+.++++.++.+.+ ++++
T Consensus 9 ~~k~vlItG~sg~IG~~~a~~l~~~g~-~v~~~~~~~~~~~~~~~~~~ 55 (255)
T PRK05717 9 NGRVALVTGAARGIGLGIAAWLIAEGW-QVVLADLDRERGSKVAKALG 55 (255)
T ss_pred CCCEEEEeCCcchHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHHcC
Confidence 478899998 79999998888888899 788887776554443 4444
No 287
>PRK08589 short chain dehydrogenase; Validated
Probab=91.70 E-value=1.6 Score=36.62 Aligned_cols=35 Identities=26% Similarity=0.345 Sum_probs=29.7
Q ss_pred CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCCh
Q 025712 178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDV 213 (249)
Q Consensus 178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~ 213 (249)
+++++||.| ++++|.+.++.....|+ +|+++++++
T Consensus 5 ~~k~vlItGas~gIG~aia~~l~~~G~-~vi~~~r~~ 40 (272)
T PRK08589 5 ENKVAVITGASTGIGQASAIALAQEGA-YVLAVDIAE 40 (272)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCcH
Confidence 478999998 69999998888888899 788888773
No 288
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=91.64 E-value=0.96 Score=35.23 Aligned_cols=45 Identities=29% Similarity=0.401 Sum_probs=33.7
Q ss_pred CCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHH
Q 025712 175 NVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR 220 (249)
Q Consensus 175 ~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~ 220 (249)
..-.|++++|.|-|-+|.-.++.++.+|+ +|++++.++-+.-.+.
T Consensus 19 ~~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga-~V~V~e~DPi~alqA~ 63 (162)
T PF00670_consen 19 LMLAGKRVVVIGYGKVGKGIARALRGLGA-RVTVTEIDPIRALQAA 63 (162)
T ss_dssp S--TTSEEEEE--SHHHHHHHHHHHHTT--EEEEE-SSHHHHHHHH
T ss_pred eeeCCCEEEEeCCCcccHHHHHHHhhCCC-EEEEEECChHHHHHhh
Confidence 34579999999999999999999999999 8999988886655543
No 289
>PRK05876 short chain dehydrogenase; Provisional
Probab=91.59 E-value=0.65 Score=39.20 Aligned_cols=40 Identities=35% Similarity=0.474 Sum_probs=32.8
Q ss_pred CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHH
Q 025712 178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSI 218 (249)
Q Consensus 178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~ 218 (249)
.++++||+| +|++|.+.+......|+ +|+.++++.++.+.
T Consensus 5 ~~k~vlVTGas~gIG~ala~~La~~G~-~Vv~~~r~~~~l~~ 45 (275)
T PRK05876 5 PGRGAVITGGASGIGLATGTEFARRGA-RVVLGDVDKPGLRQ 45 (275)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHH
Confidence 478899998 79999998888888999 78888877766543
No 290
>PRK09242 tropinone reductase; Provisional
Probab=91.49 E-value=0.7 Score=38.26 Aligned_cols=41 Identities=29% Similarity=0.384 Sum_probs=33.9
Q ss_pred CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712 178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA 219 (249)
Q Consensus 178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~ 219 (249)
.+++++|.| +|++|...++.....|+ ++++++++.++.+.+
T Consensus 8 ~~k~~lItGa~~gIG~~~a~~l~~~G~-~v~~~~r~~~~~~~~ 49 (257)
T PRK09242 8 DGQTALITGASKGIGLAIAREFLGLGA-DVLIVARDADALAQA 49 (257)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHH
Confidence 478999998 69999999999888999 788888877765544
No 291
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=91.45 E-value=0.7 Score=38.20 Aligned_cols=40 Identities=30% Similarity=0.586 Sum_probs=32.9
Q ss_pred CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHH
Q 025712 178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSI 218 (249)
Q Consensus 178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~ 218 (249)
.++++||+| +|++|.+.++.....|+ +++.++++.++.+.
T Consensus 8 ~~k~~lItGas~giG~~ia~~L~~~G~-~vvl~~r~~~~~~~ 48 (254)
T PRK08085 8 AGKNILITGSAQGIGFLLATGLAEYGA-EIIINDITAERAEL 48 (254)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHcCC-EEEEEcCCHHHHHH
Confidence 478899998 79999998888888999 78888887766543
No 292
>PRK05875 short chain dehydrogenase; Provisional
Probab=91.45 E-value=1.9 Score=36.01 Aligned_cols=40 Identities=20% Similarity=0.313 Sum_probs=33.2
Q ss_pred CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHH
Q 025712 178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSI 218 (249)
Q Consensus 178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~ 218 (249)
+++++||.| +|++|...++.+...|+ +|+.+.++.++.+.
T Consensus 6 ~~k~vlItGasg~IG~~la~~l~~~G~-~V~~~~r~~~~~~~ 46 (276)
T PRK05875 6 QDRTYLVTGGGSGIGKGVAAGLVAAGA-AVMIVGRNPDKLAA 46 (276)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-eEEEEeCCHHHHHH
Confidence 468999998 69999999999999999 78888887666443
No 293
>PRK08251 short chain dehydrogenase; Provisional
Probab=91.42 E-value=1.5 Score=35.93 Aligned_cols=40 Identities=20% Similarity=0.239 Sum_probs=32.2
Q ss_pred CCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712 179 ETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA 219 (249)
Q Consensus 179 g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~ 219 (249)
+++++|.| +|++|...++.....|+ .++.++++.++.+.+
T Consensus 2 ~k~vlItGas~giG~~la~~l~~~g~-~v~~~~r~~~~~~~~ 42 (248)
T PRK08251 2 RQKILITGASSGLGAGMAREFAAKGR-DLALCARRTDRLEEL 42 (248)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHH
Confidence 56899998 79999988877777898 788888887766554
No 294
>PRK06181 short chain dehydrogenase; Provisional
Probab=91.40 E-value=0.69 Score=38.41 Aligned_cols=39 Identities=26% Similarity=0.353 Sum_probs=32.0
Q ss_pred CCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHH
Q 025712 179 ETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSI 218 (249)
Q Consensus 179 g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~ 218 (249)
++++||.| +|++|...++.+...|+ .|+++++++++.+.
T Consensus 1 ~~~vlVtGasg~iG~~la~~l~~~g~-~Vi~~~r~~~~~~~ 40 (263)
T PRK06181 1 GKVVIITGASEGIGRALAVRLARAGA-QLVLAARNETRLAS 40 (263)
T ss_pred CCEEEEecCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHH
Confidence 35789998 69999999998889998 78888888766443
No 295
>PRK08643 acetoin reductase; Validated
Probab=91.39 E-value=0.69 Score=38.24 Aligned_cols=40 Identities=18% Similarity=0.233 Sum_probs=32.5
Q ss_pred CCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712 179 ETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA 219 (249)
Q Consensus 179 g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~ 219 (249)
++++||.| +|++|...++.....|+ +|+.++++.++.+.+
T Consensus 2 ~k~~lItGas~giG~~la~~l~~~G~-~v~~~~r~~~~~~~~ 42 (256)
T PRK08643 2 SKVALVTGAGQGIGFAIAKRLVEDGF-KVAIVDYNEETAQAA 42 (256)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence 57889997 79999999988888999 788888877665443
No 296
>PRK06179 short chain dehydrogenase; Provisional
Probab=91.37 E-value=0.94 Score=37.80 Aligned_cols=39 Identities=23% Similarity=0.229 Sum_probs=31.3
Q ss_pred CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHH
Q 025712 178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLS 217 (249)
Q Consensus 178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~ 217 (249)
.+++++|.| +|++|...++.....|+ +|++++++.++.+
T Consensus 3 ~~~~vlVtGasg~iG~~~a~~l~~~g~-~V~~~~r~~~~~~ 42 (270)
T PRK06179 3 NSKVALVTGASSGIGRATAEKLARAGY-RVFGTSRNPARAA 42 (270)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCCC-EEEEEeCChhhcc
Confidence 356899998 79999998888888899 7888887765543
No 297
>PRK07856 short chain dehydrogenase; Provisional
Probab=91.36 E-value=1.2 Score=36.82 Aligned_cols=37 Identities=22% Similarity=0.244 Sum_probs=30.9
Q ss_pred CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhH
Q 025712 178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQR 215 (249)
Q Consensus 178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~ 215 (249)
.++++||.| +|++|...++.....|+ .++.++++.++
T Consensus 5 ~~k~~lItGas~gIG~~la~~l~~~g~-~v~~~~r~~~~ 42 (252)
T PRK07856 5 TGRVVLVTGGTRGIGAGIARAFLAAGA-TVVVCGRRAPE 42 (252)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCChhh
Confidence 478999998 79999998888888999 78888776654
No 298
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=91.35 E-value=0.72 Score=32.84 Aligned_cols=42 Identities=36% Similarity=0.579 Sum_probs=34.4
Q ss_pred CCCeEEEEcCChHHHHHHHHHHH-cCCCeEEEEeCChhHHHHHHH
Q 025712 178 PETNVMIMGSGPIGLVTLLAARA-FGAPRIIITDVDVQRLSIARN 221 (249)
Q Consensus 178 ~g~~vlI~G~g~vG~~ai~la~~-~G~~~vi~~~~~~~~~~~~~~ 221 (249)
|+.+||-+|+|. |..++.+++. .++ ++++++.+++-.+.+++
T Consensus 1 p~~~vLDlGcG~-G~~~~~l~~~~~~~-~v~gvD~s~~~~~~a~~ 43 (112)
T PF12847_consen 1 PGGRVLDLGCGT-GRLSIALARLFPGA-RVVGVDISPEMLEIARE 43 (112)
T ss_dssp TTCEEEEETTTT-SHHHHHHHHHHTTS-EEEEEESSHHHHHHHHH
T ss_pred CCCEEEEEcCcC-CHHHHHHHhcCCCC-EEEEEeCCHHHHHHHHH
Confidence 688998888765 7777788884 566 89999999999888865
No 299
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=91.29 E-value=0.48 Score=45.29 Aligned_cols=53 Identities=25% Similarity=0.320 Sum_probs=42.8
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCCh---------------------hHHHHHHHcCCCEEecCC
Q 025712 178 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDV---------------------QRLSIARNLGADETAKVS 231 (249)
Q Consensus 178 ~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~---------------------~~~~~~~~~ga~~vi~~~ 231 (249)
.+++|+|+|+|..|+.++..++..|+ .|.+.+..+ ...++++++|++...+..
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~-~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~ 382 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGV-QVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNCE 382 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCC-cEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcCCc
Confidence 48999999999999999999999999 677776554 256777888987766543
No 300
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=91.27 E-value=0.73 Score=39.80 Aligned_cols=41 Identities=24% Similarity=0.344 Sum_probs=33.5
Q ss_pred CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712 178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA 219 (249)
Q Consensus 178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~ 219 (249)
.+++++|+| +|++|...++.....|+ +|++++++.++.+.+
T Consensus 5 ~~k~vlVTGas~gIG~~~a~~L~~~G~-~V~~~~r~~~~~~~~ 46 (322)
T PRK07453 5 AKGTVIITGASSGVGLYAAKALAKRGW-HVIMACRNLKKAEAA 46 (322)
T ss_pred CCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEECCHHHHHHH
Confidence 478899998 79999998888888898 788888887765543
No 301
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=91.24 E-value=1 Score=33.27 Aligned_cols=51 Identities=22% Similarity=0.145 Sum_probs=35.1
Q ss_pred eEEEEcC-ChHHHHHHHHHHH-cCCCeEEEEeCCh----------------------hHHHHHHHcCCCEEecCCC
Q 025712 181 NVMIMGS-GPIGLVTLLAARA-FGAPRIIITDVDV----------------------QRLSIARNLGADETAKVST 232 (249)
Q Consensus 181 ~vlI~G~-g~vG~~ai~la~~-~G~~~vi~~~~~~----------------------~~~~~~~~~ga~~vi~~~~ 232 (249)
+|.|+|. |-.|.+.++.+.. .+.+-+.++++++ +.++.+.+- ++.+||++.
T Consensus 2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~~~-~DVvIDfT~ 76 (124)
T PF01113_consen 2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELLEE-ADVVIDFTN 76 (124)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHTTH--SEEEEES-
T ss_pred EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccchhHHHhccc-CCEEEEcCC
Confidence 6889996 9999999999998 6774455556555 233333333 899999996
No 302
>PRK07074 short chain dehydrogenase; Provisional
Probab=91.23 E-value=2 Score=35.51 Aligned_cols=40 Identities=25% Similarity=0.398 Sum_probs=32.3
Q ss_pred CCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712 179 ETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA 219 (249)
Q Consensus 179 g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~ 219 (249)
+++++|+| +|++|...+..+...|+ ++++++++.++.+.+
T Consensus 2 ~k~ilItGat~~iG~~la~~L~~~g~-~v~~~~r~~~~~~~~ 42 (257)
T PRK07074 2 KRTALVTGAAGGIGQALARRFLAAGD-RVLALDIDAAALAAF 42 (257)
T ss_pred CCEEEEECCcchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence 56899998 69999998888778898 788888887765544
No 303
>PRK08246 threonine dehydratase; Provisional
Probab=91.21 E-value=2.5 Score=36.58 Aligned_cols=52 Identities=27% Similarity=0.427 Sum_probs=40.4
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeC--ChhHHHHHHHcCCCEEec
Q 025712 178 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDV--DVQRLSIARNLGADETAK 229 (249)
Q Consensus 178 ~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~--~~~~~~~~~~~ga~~vi~ 229 (249)
++++|+..-+|..|++....|+..|.+.++.+.. ++.|.+.++.+|++.++.
T Consensus 67 ~~~~vv~aSsGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~ 120 (310)
T PRK08246 67 PAAGVVAASGGNAGLAVAYAAAALGVPATVFVPETAPPAKVARLRALGAEVVVV 120 (310)
T ss_pred cCCeEEEeCCCHHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHCCCEEEEe
Confidence 4556554457999999999999999977777643 567899999999976543
No 304
>PRK07832 short chain dehydrogenase; Provisional
Probab=91.12 E-value=2.2 Score=35.66 Aligned_cols=38 Identities=32% Similarity=0.451 Sum_probs=30.7
Q ss_pred CeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHH
Q 025712 180 TNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSI 218 (249)
Q Consensus 180 ~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~ 218 (249)
++++|+| +|++|...++.+...|+ .++.+++++++.+.
T Consensus 1 k~vlItGas~giG~~la~~la~~G~-~vv~~~r~~~~~~~ 39 (272)
T PRK07832 1 KRCFVTGAASGIGRATALRLAAQGA-ELFLTDRDADGLAQ 39 (272)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHH
Confidence 3688997 79999999998888999 68888877766443
No 305
>cd01561 CBS_like CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase. CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine.
Probab=91.12 E-value=3 Score=35.62 Aligned_cols=54 Identities=26% Similarity=0.321 Sum_probs=41.8
Q ss_pred CCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeC--ChhHHHHHHHcCCCEEec
Q 025712 176 VGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDV--DVQRLSIARNLGADETAK 229 (249)
Q Consensus 176 ~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~--~~~~~~~~~~~ga~~vi~ 229 (249)
.+++++++...+|..|++....|+..|.+.++.+.. ++.|.+.++.+|++.++-
T Consensus 50 ~~~~~~vv~~SsGN~g~alA~~a~~~G~~~~i~vp~~~~~~k~~~~~~~Ga~v~~~ 105 (291)
T cd01561 50 LKPGTTIIEPTSGNTGIGLAMVAAAKGYRFIIVMPETMSEEKRKLLRALGAEVILT 105 (291)
T ss_pred CCCCCEEEEeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCEEEEe
Confidence 345666554458999999999999999976666654 578899999999986643
No 306
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=91.11 E-value=1 Score=38.54 Aligned_cols=62 Identities=24% Similarity=0.334 Sum_probs=38.6
Q ss_pred CCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCCh----hHHHHHHHcC-C-CEEecCCCCcccHHHH
Q 025712 177 GPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDV----QRLSIARNLG-A-DETAKVSTDIEMWGRY 240 (249)
Q Consensus 177 ~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~----~~~~~~~~~g-a-~~vi~~~~~~~~~~~~ 240 (249)
-.|+.|||+| ++++|++.++=...+|+ +++..|.+. +..+.+++.| + .++.|.+++ ++..+-
T Consensus 36 v~g~~vLITGgg~GlGr~ialefa~rg~-~~vl~Din~~~~~etv~~~~~~g~~~~y~cdis~~-eei~~~ 104 (300)
T KOG1201|consen 36 VSGEIVLITGGGSGLGRLIALEFAKRGA-KLVLWDINKQGNEETVKEIRKIGEAKAYTCDISDR-EEIYRL 104 (300)
T ss_pred ccCCEEEEeCCCchHHHHHHHHHHHhCC-eEEEEeccccchHHHHHHHHhcCceeEEEecCCCH-HHHHHH
Confidence 4799999998 67999875555555677 677776554 3344445545 2 356666553 444333
No 307
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=91.09 E-value=2.4 Score=35.12 Aligned_cols=46 Identities=20% Similarity=0.208 Sum_probs=33.4
Q ss_pred CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChh--HHHHHHHcCC
Q 025712 178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQ--RLSIARNLGA 224 (249)
Q Consensus 178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~--~~~~~~~~ga 224 (249)
.++++||.| ++++|.+.++.....|+ +|+++++++. ..+.+++.+.
T Consensus 7 ~~k~~lItGas~gIG~aia~~l~~~G~-~vv~~~~~~~~~~~~~~~~~~~ 55 (251)
T PRK12481 7 NGKVAIITGCNTGLGQGMAIGLAKAGA-DIVGVGVAEAPETQAQVEALGR 55 (251)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEecCchHHHHHHHHHHcCC
Confidence 578999998 79999999998888999 6777765432 2234444553
No 308
>PRK06114 short chain dehydrogenase; Provisional
Probab=91.08 E-value=1.9 Score=35.70 Aligned_cols=35 Identities=17% Similarity=0.271 Sum_probs=29.3
Q ss_pred CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCCh
Q 025712 178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDV 213 (249)
Q Consensus 178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~ 213 (249)
+++++||.| ++++|.+.++.....|+ +++.++++.
T Consensus 7 ~~k~~lVtG~s~gIG~~ia~~l~~~G~-~v~~~~r~~ 42 (254)
T PRK06114 7 DGQVAFVTGAGSGIGQRIAIGLAQAGA-DVALFDLRT 42 (254)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCc
Confidence 478999997 79999999998888999 777777654
No 309
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=91.08 E-value=0.66 Score=44.46 Aligned_cols=51 Identities=24% Similarity=0.362 Sum_probs=39.7
Q ss_pred CCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChh---------------------HHHHHHHcCCCEEe
Q 025712 177 GPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQ---------------------RLSIARNLGADETA 228 (249)
Q Consensus 177 ~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~---------------------~~~~~~~~ga~~vi 228 (249)
..+++|+|+|+|..|+.++..+...|+ .|.+++..+. ..++++++|++...
T Consensus 325 ~~~~~VaIIGaGpAGLsaA~~L~~~G~-~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~ 396 (654)
T PRK12769 325 KSDKRVAIIGAGPAGLACADVLARNGV-AVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFEL 396 (654)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEEC
Confidence 358899999999999999999999999 6777765432 35666777865543
No 310
>PRK08303 short chain dehydrogenase; Provisional
Probab=91.07 E-value=1.9 Score=37.05 Aligned_cols=34 Identities=18% Similarity=0.204 Sum_probs=28.9
Q ss_pred CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCC
Q 025712 178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVD 212 (249)
Q Consensus 178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~ 212 (249)
.+++++|.| ++++|.+.++.....|+ +|+.++++
T Consensus 7 ~~k~~lITGgs~GIG~aia~~la~~G~-~Vv~~~r~ 41 (305)
T PRK08303 7 RGKVALVAGATRGAGRGIAVELGAAGA-TVYVTGRS 41 (305)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEecc
Confidence 478999998 68999999988888999 78877765
No 311
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=91.06 E-value=2.1 Score=35.84 Aligned_cols=41 Identities=20% Similarity=0.268 Sum_probs=33.3
Q ss_pred CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712 178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA 219 (249)
Q Consensus 178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~ 219 (249)
.+++++|.| +|++|.+.+......|+ +|++++++.++.+.+
T Consensus 9 ~~k~vlVtGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~ 50 (278)
T PRK08277 9 KGKVAVITGGGGVLGGAMAKELARAGA-KVAILDRNQEKAEAV 50 (278)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence 478899998 69999999998888999 788888877655433
No 312
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=91.05 E-value=0.85 Score=35.51 Aligned_cols=47 Identities=19% Similarity=0.204 Sum_probs=35.1
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCC
Q 025712 178 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGA 224 (249)
Q Consensus 178 ~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga 224 (249)
.+++|.|+|-|+-|.+..+-.|..|.+.+|+........+.+++-|.
T Consensus 3 ~~k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~Gf 49 (165)
T PF07991_consen 3 KGKTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKAKADGF 49 (165)
T ss_dssp CTSEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHHHTT-
T ss_pred CCCEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHHHCCC
Confidence 57899999999999999999999999555555544447888887775
No 313
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=91.00 E-value=1.5 Score=39.69 Aligned_cols=47 Identities=17% Similarity=0.354 Sum_probs=39.1
Q ss_pred CCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHH-HcC
Q 025712 177 GPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR-NLG 223 (249)
Q Consensus 177 ~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~-~~g 223 (249)
-.+.+++|+|+|+.|.+++..+...|+..+.++.++.++.+.+. +++
T Consensus 179 l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~ 226 (414)
T PRK13940 179 ISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFR 226 (414)
T ss_pred ccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhc
Confidence 46889999999999999999999999878999988887755553 354
No 314
>PRK08639 threonine dehydratase; Validated
Probab=90.97 E-value=1.9 Score=38.98 Aligned_cols=46 Identities=24% Similarity=0.386 Sum_probs=37.2
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCCeEEEEeC--ChhHHHHHHHcCCC
Q 025712 180 TNVMIMGSGPIGLVTLLAARAFGAPRIIITDV--DVQRLSIARNLGAD 225 (249)
Q Consensus 180 ~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~--~~~~~~~~~~~ga~ 225 (249)
+.|+..++|..|++....|+.+|.+.+|.+.. +..|.+.++.+||+
T Consensus 74 ~~Vv~aSsGN~g~alA~~a~~~G~~~~IvmP~~~~~~k~~~~r~~GA~ 121 (420)
T PRK08639 74 AGVVCASAGNHAQGVAYACRHLGIPGVIFMPVTTPQQKIDQVRFFGGE 121 (420)
T ss_pred CEEEEECccHHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHcCCC
Confidence 34444468999999999999999977777744 45789999999997
No 315
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.92 E-value=1 Score=41.39 Aligned_cols=50 Identities=26% Similarity=0.292 Sum_probs=37.8
Q ss_pred CCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCCh-----hHHHHHHHcCCCEE
Q 025712 177 GPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDV-----QRLSIARNLGADET 227 (249)
Q Consensus 177 ~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~-----~~~~~~~~~ga~~v 227 (249)
..+++++|+|.|..|..++.+++..|+ .|.+++..+ ...+.+++.|+...
T Consensus 14 ~~~~~v~viG~G~~G~~~A~~L~~~G~-~V~~~d~~~~~~~~~~~~~l~~~gv~~~ 68 (480)
T PRK01438 14 WQGLRVVVAGLGVSGFAAADALLELGA-RVTVVDDGDDERHRALAAILEALGATVR 68 (480)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchhhhHHHHHHHHHcCCEEE
Confidence 357899999999999999999999999 688887543 22345666676443
No 316
>PRK08813 threonine dehydratase; Provisional
Probab=90.91 E-value=2.2 Score=37.60 Aligned_cols=47 Identities=15% Similarity=0.179 Sum_probs=38.4
Q ss_pred EEE-cCChHHHHHHHHHHHcCCCeEEEEe--CChhHHHHHHHcCCCEEec
Q 025712 183 MIM-GSGPIGLVTLLAARAFGAPRIIITD--VDVQRLSIARNLGADETAK 229 (249)
Q Consensus 183 lI~-G~g~vG~~ai~la~~~G~~~vi~~~--~~~~~~~~~~~~ga~~vi~ 229 (249)
+|. .+|..|++....|+.+|++.+|.+. .+..|.+.++.+|++.+..
T Consensus 84 VV~aSsGN~G~alA~aa~~~Gi~~~IvvP~~~~~~K~~~i~~~GAeVv~~ 133 (349)
T PRK08813 84 VICASAGNHAQGVAWSAYRLGVQAITVMPHGAPQTKIAGVAHWGATVRQH 133 (349)
T ss_pred EEEECCCHHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEE
Confidence 455 4899999999999999997777773 4668999999999977653
No 317
>PRK06197 short chain dehydrogenase; Provisional
Probab=90.87 E-value=0.74 Score=39.40 Aligned_cols=39 Identities=18% Similarity=0.267 Sum_probs=32.0
Q ss_pred CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHH
Q 025712 178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLS 217 (249)
Q Consensus 178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~ 217 (249)
.+++++|.| +|++|.+.++.....|+ +++.+.++.++.+
T Consensus 15 ~~k~vlItGas~gIG~~~a~~l~~~G~-~vi~~~r~~~~~~ 54 (306)
T PRK06197 15 SGRVAVVTGANTGLGYETAAALAAKGA-HVVLAVRNLDKGK 54 (306)
T ss_pred CCCEEEEcCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHH
Confidence 578999998 79999998888888899 7888877766644
No 318
>PRK06352 threonine synthase; Validated
Probab=90.87 E-value=2.6 Score=37.13 Aligned_cols=64 Identities=16% Similarity=0.118 Sum_probs=44.3
Q ss_pred eEEEE-cCChHHHHHHHHHHHcCCCeEEEEeC---ChhHHHHHHHcCCCEEecCCCCcccHHHHHHHHH
Q 025712 181 NVMIM-GSGPIGLVTLLAARAFGAPRIIITDV---DVQRLSIARNLGADETAKVSTDIEMWGRYKMQWV 245 (249)
Q Consensus 181 ~vlI~-G~g~vG~~ai~la~~~G~~~vi~~~~---~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~ 245 (249)
.-+|. .+|..|.+....|+.+|.+.++.+.. +.+|...++.+|++.++. ..+..+..+.+.++.
T Consensus 76 ~~vV~aSsGN~G~AlA~~aa~~G~~~~ivvp~~~~~~~k~~~~~a~GA~V~~~-~~~~~~~~~~a~~~~ 143 (351)
T PRK06352 76 EAVICASTGNTSAAAAAYATRAGLKAYIVIPEGKVALGKLAQAVMYGADIISI-QGNFDEALKSVRELA 143 (351)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCcEEEEEeCCCCcHHHHHHHHhcCCEEEEE-CCCHHHHHHHHHHHH
Confidence 34555 57999999999999999977777743 467999999999976543 222234444444443
No 319
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=90.85 E-value=0.92 Score=35.97 Aligned_cols=38 Identities=21% Similarity=0.282 Sum_probs=30.6
Q ss_pred eEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712 181 NVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA 219 (249)
Q Consensus 181 ~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~ 219 (249)
+|.|+|+|..|.....++...|+ .|..++.+++.++..
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~~~l~~~ 38 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGY-EVTLYDRSPEALERA 38 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTS-EEEEE-SSHHHHHHH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCC-cEEEEECChHHHHhh
Confidence 57899999999988888888899 899999998876554
No 320
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=90.82 E-value=1.1 Score=36.87 Aligned_cols=37 Identities=22% Similarity=0.450 Sum_probs=33.7
Q ss_pred eEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHH
Q 025712 181 NVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSI 218 (249)
Q Consensus 181 ~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~ 218 (249)
+++|.|+|.+|...++.+...|. .|++++.++++.+.
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~g~-~Vv~Id~d~~~~~~ 38 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEEGH-NVVLIDRDEERVEE 38 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhCCC-ceEEEEcCHHHHHH
Confidence 67889999999999999999999 79999999988777
No 321
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=90.76 E-value=0.82 Score=37.44 Aligned_cols=38 Identities=21% Similarity=0.274 Sum_probs=31.3
Q ss_pred CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHH
Q 025712 178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRL 216 (249)
Q Consensus 178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~ 216 (249)
.++++||+| +|.+|...+......|+ .|++++++.++.
T Consensus 5 ~~~~ilItGasg~iG~~l~~~l~~~g~-~V~~~~r~~~~~ 43 (251)
T PRK12826 5 EGRVALVTGAARGIGRAIAVRLAADGA-EVIVVDICGDDA 43 (251)
T ss_pred CCCEEEEcCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHH
Confidence 467899998 79999998888888899 788888875544
No 322
>PRK06138 short chain dehydrogenase; Provisional
Probab=90.74 E-value=0.85 Score=37.46 Aligned_cols=40 Identities=23% Similarity=0.301 Sum_probs=31.9
Q ss_pred CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHH
Q 025712 178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSI 218 (249)
Q Consensus 178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~ 218 (249)
++++++|.| +|++|...++.....|+ +++.+.++.++.+.
T Consensus 4 ~~k~~lItG~sg~iG~~la~~l~~~G~-~v~~~~r~~~~~~~ 44 (252)
T PRK06138 4 AGRVAIVTGAGSGIGRATAKLFAREGA-RVVVADRDAEAAER 44 (252)
T ss_pred CCcEEEEeCCCchHHHHHHHHHHHCCC-eEEEecCCHHHHHH
Confidence 467899998 79999998887777898 78888777665443
No 323
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=90.73 E-value=0.73 Score=34.97 Aligned_cols=43 Identities=21% Similarity=0.374 Sum_probs=34.1
Q ss_pred EEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCE
Q 025712 182 VMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADE 226 (249)
Q Consensus 182 vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~ 226 (249)
|+|.|+|++|.......+..|. .|..+.+.+ +.+.+++.|...
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~-~V~l~~r~~-~~~~~~~~g~~~ 43 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGH-DVTLVSRSP-RLEAIKEQGLTI 43 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTC-EEEEEESHH-HHHHHHHHCEEE
T ss_pred CEEECcCHHHHHHHHHHHHCCC-ceEEEEccc-cHHhhhheeEEE
Confidence 6789999999887777777998 788887777 778787766543
No 324
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=90.72 E-value=2.6 Score=35.53 Aligned_cols=35 Identities=20% Similarity=0.174 Sum_probs=28.7
Q ss_pred CCCeEEEEcC---ChHHHHHHHHHHHcCCCeEEEEeCCh
Q 025712 178 PETNVMIMGS---GPIGLVTLLAARAFGAPRIIITDVDV 213 (249)
Q Consensus 178 ~g~~vlI~G~---g~vG~~ai~la~~~G~~~vi~~~~~~ 213 (249)
.++++||.|+ +++|.+.++.....|+ +|+.+++++
T Consensus 4 ~~k~~lItGas~~~GIG~aiA~~la~~G~-~Vil~~r~~ 41 (274)
T PRK08415 4 KGKKGLIVGVANNKSIAYGIAKACFEQGA-ELAFTYLNE 41 (274)
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHHHCCC-EEEEEecCH
Confidence 4789999984 5899998888888999 788777764
No 325
>PLN02686 cinnamoyl-CoA reductase
Probab=90.72 E-value=1.2 Score=39.31 Aligned_cols=45 Identities=16% Similarity=0.084 Sum_probs=34.4
Q ss_pred CCCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHH
Q 025712 176 VGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN 221 (249)
Q Consensus 176 ~~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~ 221 (249)
...+++|||+| +|.+|...+..+...|+ .|+++.++.++.+.+++
T Consensus 50 ~~~~k~VLVTGatGfIG~~lv~~L~~~G~-~V~~~~r~~~~~~~l~~ 95 (367)
T PLN02686 50 DAEARLVCVTGGVSFLGLAIVDRLLRHGY-SVRIAVDTQEDKEKLRE 95 (367)
T ss_pred CCCCCEEEEECCchHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH
Confidence 35578999998 79999999998889999 67776666655544444
No 326
>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional
Probab=90.67 E-value=2.4 Score=35.67 Aligned_cols=36 Identities=25% Similarity=0.185 Sum_probs=28.7
Q ss_pred CCCCeEEEEcC---ChHHHHHHHHHHHcCCCeEEEEeCCh
Q 025712 177 GPETNVMIMGS---GPIGLVTLLAARAFGAPRIIITDVDV 213 (249)
Q Consensus 177 ~~g~~vlI~G~---g~vG~~ai~la~~~G~~~vi~~~~~~ 213 (249)
-.++++||.|+ +++|.+.++.....|+ +|+.+.+++
T Consensus 8 ~~~k~~lItGas~~~GIG~aia~~la~~G~-~V~l~~r~~ 46 (272)
T PRK08159 8 MAGKRGLILGVANNRSIAWGIAKACRAAGA-ELAFTYQGD 46 (272)
T ss_pred ccCCEEEEECCCCCCcHHHHHHHHHHHCCC-EEEEEcCch
Confidence 45789999984 6899998888888999 777776553
No 327
>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed
Probab=90.57 E-value=2.3 Score=34.69 Aligned_cols=41 Identities=24% Similarity=0.301 Sum_probs=32.9
Q ss_pred CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712 178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA 219 (249)
Q Consensus 178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~ 219 (249)
++++++|.| +|++|...+......|+ .|+..+++.++.+.+
T Consensus 5 ~~~~vlItGa~g~iG~~la~~l~~~g~-~v~~~~~~~~~~~~~ 46 (245)
T PRK12936 5 SGRKALVTGASGGIGEEIARLLHAQGA-IVGLHGTRVEKLEAL 46 (245)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEcCCHHHHHHH
Confidence 467999998 79999998888888998 777777776665544
No 328
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=90.56 E-value=1.5 Score=31.60 Aligned_cols=48 Identities=21% Similarity=0.351 Sum_probs=38.3
Q ss_pred HHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHH
Q 025712 172 RRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR 220 (249)
Q Consensus 172 ~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~ 220 (249)
......++++++-+|+|. |..+..+++..+...+++++.++...+.++
T Consensus 13 ~~~~~~~~~~vldlG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~ 60 (124)
T TIGR02469 13 SKLRLRPGDVLWDIGAGS-GSITIEAARLVPNGRVYAIERNPEALRLIE 60 (124)
T ss_pred HHcCCCCCCEEEEeCCCC-CHHHHHHHHHCCCceEEEEcCCHHHHHHHH
Confidence 445667788888888876 888889998875458999999988887764
No 329
>PRK06484 short chain dehydrogenase; Validated
Probab=90.55 E-value=1.7 Score=40.19 Aligned_cols=46 Identities=24% Similarity=0.420 Sum_probs=37.2
Q ss_pred CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH-HHcCC
Q 025712 178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA-RNLGA 224 (249)
Q Consensus 178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~~ga 224 (249)
.++++||+| ++++|.+.++.....|+ +|+.++++.++.+.+ ++++.
T Consensus 4 ~~k~~lITGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~ 51 (520)
T PRK06484 4 QSRVVLVTGAAGGIGRAACQRFARAGD-QVVVADRNVERARERADSLGP 51 (520)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCC
Confidence 578999998 78999999998889999 788888888776554 44554
No 330
>PRK08267 short chain dehydrogenase; Provisional
Probab=90.51 E-value=2.4 Score=35.12 Aligned_cols=41 Identities=27% Similarity=0.298 Sum_probs=33.8
Q ss_pred CeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHH
Q 025712 180 TNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN 221 (249)
Q Consensus 180 ~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~ 221 (249)
+++||.| +|++|...++.....|+ +|++++++.++.+.+.+
T Consensus 2 k~vlItGasg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~ 43 (260)
T PRK08267 2 KSIFITGAASGIGRATALLFAAEGW-RVGAYDINEAGLAALAA 43 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHH
Confidence 5789998 79999999988888999 78888888887666543
No 331
>PRK07806 short chain dehydrogenase; Provisional
Probab=90.47 E-value=3.1 Score=34.07 Aligned_cols=35 Identities=23% Similarity=0.326 Sum_probs=28.8
Q ss_pred CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCCh
Q 025712 178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDV 213 (249)
Q Consensus 178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~ 213 (249)
.+++++|.| +|++|...+..+...|+ .|+++.++.
T Consensus 5 ~~k~vlItGasggiG~~l~~~l~~~G~-~V~~~~r~~ 40 (248)
T PRK07806 5 PGKTALVTGSSRGIGADTAKILAGAGA-HVVVNYRQK 40 (248)
T ss_pred CCcEEEEECCCCcHHHHHHHHHHHCCC-EEEEEeCCc
Confidence 468899998 69999999998888999 677776654
No 332
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=90.45 E-value=2.5 Score=38.15 Aligned_cols=43 Identities=14% Similarity=0.253 Sum_probs=36.0
Q ss_pred EEE-cCChHHHHHHHHHHHcCCCeEEEEeC--ChhHHHHHHHcCCC
Q 025712 183 MIM-GSGPIGLVTLLAARAFGAPRIIITDV--DVQRLSIARNLGAD 225 (249)
Q Consensus 183 lI~-G~g~vG~~ai~la~~~G~~~vi~~~~--~~~~~~~~~~~ga~ 225 (249)
+|. ++|..|++....|+.+|.+.++.+.. +..|.+.++.+||+
T Consensus 67 vv~aSsGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~ 112 (409)
T TIGR02079 67 VVCASAGNHAQGFAYACRHLGVHGTVFMPATTPKQKIDRVKIFGGE 112 (409)
T ss_pred EEEECccHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCC
Confidence 454 58999999999999999977777743 46789999999997
No 333
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=90.38 E-value=1 Score=38.11 Aligned_cols=43 Identities=21% Similarity=0.341 Sum_probs=35.0
Q ss_pred CCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712 176 VGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA 219 (249)
Q Consensus 176 ~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~ 219 (249)
...+++++|+|+|+.|.+++......|. .+.+++++.++.+.+
T Consensus 114 ~~~~k~vliiGaGg~g~aia~~L~~~g~-~v~v~~R~~~~~~~l 156 (270)
T TIGR00507 114 LRPNQRVLIIGAGGAARAVALPLLKADC-NVIIANRTVSKAEEL 156 (270)
T ss_pred CccCCEEEEEcCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence 3457899999999999998888888898 788888887775443
No 334
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=90.36 E-value=1.2 Score=39.85 Aligned_cols=49 Identities=20% Similarity=0.419 Sum_probs=41.9
Q ss_pred HHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHc
Q 025712 172 RRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNL 222 (249)
Q Consensus 172 ~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ 222 (249)
+..+++++++||-+|+| .|..+..+++..|+ +|++++.+++..+.+++.
T Consensus 161 ~~l~l~~g~rVLDIGcG-~G~~a~~la~~~g~-~V~giDlS~~~l~~A~~~ 209 (383)
T PRK11705 161 RKLQLKPGMRVLDIGCG-WGGLARYAAEHYGV-SVVGVTISAEQQKLAQER 209 (383)
T ss_pred HHhCCCCCCEEEEeCCC-ccHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHH
Confidence 56788999999999875 47778888988898 899999999999998764
No 335
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy
Probab=90.33 E-value=3.4 Score=34.13 Aligned_cols=67 Identities=18% Similarity=0.214 Sum_probs=45.0
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeC--ChhHHHHHHHcCCCEEecCCCCcccHHHHHHHHH
Q 025712 178 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDV--DVQRLSIARNLGADETAKVSTDIEMWGRYKMQWV 245 (249)
Q Consensus 178 ~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~--~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~ 245 (249)
++..|+..++|..|.+....|+..|.+.++.+.. +..+.+.++.+|++.+.. ....++..+.++++.
T Consensus 49 ~~~~vv~~ssGN~g~alA~~a~~~g~~~~v~~p~~~~~~~~~~~~~~Ga~v~~~-~~~~~~~~~~a~~~~ 117 (244)
T cd00640 49 PKGVIIESTGGNTGIALAAAAARLGLKCTIVMPEGASPEKVAQMRALGAEVVLV-PGDFDDAIALAKELA 117 (244)
T ss_pred CCCEEEEeCCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHCCCEEEEE-CCCHHHHHHHHHHHH
Confidence 3444444457899999999999999966666643 678888999999876543 332234444444444
No 336
>cd06447 D-Ser-dehyd D-Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- or D-serine to pyruvate and ammonia. D-serine dehydratase serves as a detoxifying enzyme in most E. coli strains where D-serine is a competitive antagonist of beta-alanine in the biosynthetic pathway to pentothenate and coenzyme A. D-serine dehydratase is different from other pyridoxal-5'-phosphate-dependent enzymes in that it catalyzes alpha, beta-elimination reactions on amino acids.
Probab=90.33 E-value=3.3 Score=37.29 Aligned_cols=63 Identities=19% Similarity=0.164 Sum_probs=45.5
Q ss_pred EEEEc-CChHHHHHHHHHHHcCCCeEEEE--eCChhHHHHHHHcCCCEEecCCCCcccHHHHHHHHH
Q 025712 182 VMIMG-SGPIGLVTLLAARAFGAPRIIIT--DVDVQRLSIARNLGADETAKVSTDIEMWGRYKMQWV 245 (249)
Q Consensus 182 vlI~G-~g~vG~~ai~la~~~G~~~vi~~--~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~ 245 (249)
-+|.. +|..|++....|+.+|++.+|.+ ..+++|.+.++.+|++.+.. ..+.++..+..+++.
T Consensus 136 ~VV~aSsGN~G~alA~~a~~~G~~~~IvvP~~~~~~K~~~ira~GAeVv~v-~~~~~~a~~~a~~la 201 (404)
T cd06447 136 SIAVGSTGNLGLSIGIMAAALGFKVTVHMSADAKQWKKDKLRSKGVTVVEY-ETDYSKAVEEGRKQA 201 (404)
T ss_pred EEEEECccHHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHCCCEEEEE-CCCHHHHHHHHHHHH
Confidence 45555 79999999999999999777777 34779999999999987654 222234444444443
No 337
>PLN02970 serine racemase
Probab=90.32 E-value=2.6 Score=36.79 Aligned_cols=50 Identities=22% Similarity=0.190 Sum_probs=39.6
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCCeEEEEe--CChhHHHHHHHcCCCEEec
Q 025712 180 TNVMIMGSGPIGLVTLLAARAFGAPRIIITD--VDVQRLSIARNLGADETAK 229 (249)
Q Consensus 180 ~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~--~~~~~~~~~~~~ga~~vi~ 229 (249)
+.++...+|..|.+....|+.+|++.++.+. .+++|.+.++.+|++.+..
T Consensus 76 ~~vv~aSsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~Vi~~ 127 (328)
T PLN02970 76 KGVVTHSSGNHAAALALAAKLRGIPAYIVVPKNAPACKVDAVIRYGGIITWC 127 (328)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhcCCEEEEe
Confidence 3444446899999999999999997666664 3678899999999887653
No 338
>PRK08263 short chain dehydrogenase; Provisional
Probab=90.31 E-value=2.1 Score=35.94 Aligned_cols=42 Identities=29% Similarity=0.230 Sum_probs=34.2
Q ss_pred CCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHH
Q 025712 179 ETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN 221 (249)
Q Consensus 179 g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~ 221 (249)
++++||.| +|++|...++.+...|+ .|+.++++.++.+.+.+
T Consensus 3 ~k~vlItGasg~iG~~~a~~l~~~g~-~V~~~~r~~~~~~~~~~ 45 (275)
T PRK08263 3 EKVWFITGASRGFGRAWTEAALERGD-RVVATARDTATLADLAE 45 (275)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHH
Confidence 46899998 79999998888888898 78888888877665544
No 339
>PRK07476 eutB threonine dehydratase; Provisional
Probab=90.27 E-value=2.3 Score=36.91 Aligned_cols=62 Identities=21% Similarity=0.217 Sum_probs=43.4
Q ss_pred EEE-cCChHHHHHHHHHHHcCCCeEEEEeC--ChhHHHHHHHcCCCEEecCCCCcccHHHHHHHHH
Q 025712 183 MIM-GSGPIGLVTLLAARAFGAPRIIITDV--DVQRLSIARNLGADETAKVSTDIEMWGRYKMQWV 245 (249)
Q Consensus 183 lI~-G~g~vG~~ai~la~~~G~~~vi~~~~--~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~ 245 (249)
+|. .+|..|.++...|+..|.+.++.+.. ++.|.+.++.+|++.++. .....+..+...++.
T Consensus 70 vv~aSsGN~g~alA~~a~~~G~~~~i~vp~~~~~~k~~~~~~~GA~V~~~-~~~~~~~~~~a~~~~ 134 (322)
T PRK07476 70 VVTASTGNHGRALAYAARALGIRATICMSRLVPANKVDAIRALGAEVRIV-GRSQDDAQAEVERLV 134 (322)
T ss_pred EEEECCChHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHcCCEEEEE-CCCHHHHHHHHHHHH
Confidence 444 57999999999999999976666643 567899999999986653 322233444444443
No 340
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=90.27 E-value=1.1 Score=36.54 Aligned_cols=40 Identities=20% Similarity=0.237 Sum_probs=32.5
Q ss_pred CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHH
Q 025712 178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSI 218 (249)
Q Consensus 178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~ 218 (249)
.+++++|.| +|++|...+..+...|+ .|+.++++.++.+.
T Consensus 6 ~~~~vlVtG~sg~iG~~l~~~L~~~G~-~Vi~~~r~~~~~~~ 46 (239)
T PRK07666 6 QGKNALITGAGRGIGRAVAIALAKEGV-NVGLLARTEENLKA 46 (239)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHH
Confidence 357899998 79999998888888999 78888887766443
No 341
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=90.27 E-value=1.2 Score=36.44 Aligned_cols=45 Identities=22% Similarity=0.285 Sum_probs=34.8
Q ss_pred EEEEc-CChHHHHHHHHHHHcCCCeEEEEeCCh--hHHHHHHHcCCCEE
Q 025712 182 VMIMG-SGPIGLVTLLAARAFGAPRIIITDVDV--QRLSIARNLGADET 227 (249)
Q Consensus 182 vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~--~~~~~~~~~ga~~v 227 (249)
|+|.| +|.+|...++.+...++ .|.++.++. +..+.+++.|++.+
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~-~V~~l~R~~~~~~~~~l~~~g~~vv 48 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGF-SVRALVRDPSSDRAQQLQALGAEVV 48 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTG-CEEEEESSSHHHHHHHHHHTTTEEE
T ss_pred CEEECCccHHHHHHHHHHHhCCC-CcEEEEeccchhhhhhhhcccceEe
Confidence 68888 69999999999999998 566665654 34666778888654
No 342
>PRK06720 hypothetical protein; Provisional
Probab=90.27 E-value=2.8 Score=32.78 Aligned_cols=39 Identities=28% Similarity=0.357 Sum_probs=31.4
Q ss_pred CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHH
Q 025712 178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLS 217 (249)
Q Consensus 178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~ 217 (249)
+++.++|.| ++++|...+......|+ +++.++++.+..+
T Consensus 15 ~gk~~lVTGa~~GIG~aia~~l~~~G~-~V~l~~r~~~~~~ 54 (169)
T PRK06720 15 AGKVAIVTGGGIGIGRNTALLLAKQGA-KVIVTDIDQESGQ 54 (169)
T ss_pred CCCEEEEecCCChHHHHHHHHHHHCCC-EEEEEECCHHHHH
Confidence 578899998 68899998888888898 7888887766543
No 343
>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....
Probab=90.24 E-value=2.1 Score=32.07 Aligned_cols=49 Identities=20% Similarity=0.270 Sum_probs=35.6
Q ss_pred EEEEc-CChHHHHHHHHHHHcC--CCeEEEEeCChhH---HHHHHHcCCCEEecCC
Q 025712 182 VMIMG-SGPIGLVTLLAARAFG--APRIIITDVDVQR---LSIARNLGADETAKVS 231 (249)
Q Consensus 182 vlI~G-~g~vG~~ai~la~~~G--~~~vi~~~~~~~~---~~~~~~~ga~~vi~~~ 231 (249)
|.|+| +|++|.-++++.+... + ++++.....+- .+.+++|....++..+
T Consensus 1 i~ILGsTGSIG~qtLdVi~~~~d~f-~v~~Lsa~~n~~~L~~q~~~f~p~~v~i~~ 55 (129)
T PF02670_consen 1 IAILGSTGSIGTQTLDVIRKHPDKF-EVVALSAGSNIEKLAEQAREFKPKYVVIAD 55 (129)
T ss_dssp EEEESTTSHHHHHHHHHHHHCTTTE-EEEEEEESSTHHHHHHHHHHHT-SEEEESS
T ss_pred CEEEcCCcHHHHHHHHHHHhCCCce-EEEEEEcCCCHHHHHHHHHHhCCCEEEEcC
Confidence 56788 7999999999999987 7 67777543322 3444678999888665
No 344
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=90.17 E-value=3.1 Score=37.04 Aligned_cols=49 Identities=18% Similarity=0.296 Sum_probs=38.6
Q ss_pred eEEEEcCChHHHHHHHHHHHcCCCeEEEEeC--ChhHHHHHHHcCCCEEec
Q 025712 181 NVMIMGSGPIGLVTLLAARAFGAPRIIITDV--DVQRLSIARNLGADETAK 229 (249)
Q Consensus 181 ~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~--~~~~~~~~~~~ga~~vi~ 229 (249)
.++...+|.-|++....|+.+|.+.++.+.. +.+|.+.++.+|++.+..
T Consensus 50 ~vv~aSsGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~ 100 (380)
T TIGR01127 50 GVVAASAGNHAQGVAYAAKKFGIKAVIVMPESAPPSKVKATKSYGAEVILH 100 (380)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCCcHHHHHHHHHCCCEEEEE
Confidence 3433468999999999999999977776643 457899999999977653
No 345
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=90.14 E-value=3.2 Score=34.39 Aligned_cols=38 Identities=29% Similarity=0.380 Sum_probs=30.9
Q ss_pred eEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712 181 NVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA 219 (249)
Q Consensus 181 ~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~ 219 (249)
++||.| ++++|.+.++.....|+ +|+.+++++++.+.+
T Consensus 2 ~vlItGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~ 40 (259)
T PRK08340 2 NVLVTASSRGIGFNVARELLKKGA-RVVISSRNEENLEKA 40 (259)
T ss_pred eEEEEcCCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHH
Confidence 688998 79999998888888899 788888887665443
No 346
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=90.04 E-value=0.93 Score=42.32 Aligned_cols=42 Identities=21% Similarity=0.355 Sum_probs=35.8
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHH
Q 025712 178 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR 220 (249)
Q Consensus 178 ~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~ 220 (249)
.+++++|+|+|+.|.+++..+...|+ +++++.++.++.+.+.
T Consensus 378 ~~k~vlIlGaGGagrAia~~L~~~G~-~V~i~nR~~e~a~~la 419 (529)
T PLN02520 378 AGKLFVVIGAGGAGKALAYGAKEKGA-RVVIANRTYERAKELA 419 (529)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHH
Confidence 46889999999999999999999999 8888888877766653
No 347
>PRK06398 aldose dehydrogenase; Validated
Probab=90.04 E-value=1.3 Score=36.78 Aligned_cols=36 Identities=19% Similarity=0.298 Sum_probs=29.6
Q ss_pred CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChh
Q 025712 178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQ 214 (249)
Q Consensus 178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~ 214 (249)
.++++||+| ++++|.+.+......|+ +|+.+++++.
T Consensus 5 ~gk~vlItGas~gIG~~ia~~l~~~G~-~Vi~~~r~~~ 41 (258)
T PRK06398 5 KDKVAIVTGGSQGIGKAVVNRLKEEGS-NVINFDIKEP 41 (258)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCcc
Confidence 468999998 79999999999988999 7777766543
No 348
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.01 E-value=0.86 Score=41.62 Aligned_cols=47 Identities=30% Similarity=0.273 Sum_probs=37.5
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCC
Q 025712 178 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGAD 225 (249)
Q Consensus 178 ~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~ 225 (249)
.+++|+|+|.|+.|..++++++..|+ .|.+.|..+.....+++.|+.
T Consensus 8 ~~~~i~viG~G~~G~~~a~~l~~~G~-~v~~~D~~~~~~~~l~~~g~~ 54 (460)
T PRK01390 8 AGKTVAVFGLGGSGLATARALVAGGA-EVIAWDDNPASRAKAAAAGIT 54 (460)
T ss_pred CCCEEEEEeecHhHHHHHHHHHHCCC-EEEEECCChhhHHHHHhcCcc
Confidence 36789999999999999999999999 799998766555445555543
No 349
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=89.99 E-value=3.1 Score=34.42 Aligned_cols=34 Identities=26% Similarity=0.283 Sum_probs=29.0
Q ss_pred CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCC
Q 025712 178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVD 212 (249)
Q Consensus 178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~ 212 (249)
.++++||.| +|++|.+.++.....|+ .++++.++
T Consensus 14 ~~k~vlItGas~gIG~~ia~~l~~~G~-~v~~~~~~ 48 (258)
T PRK06935 14 DGKVAIVTGGNTGLGQGYAVALAKAGA-DIIITTHG 48 (258)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence 578999998 79999999998888999 67777666
No 350
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=89.91 E-value=2.8 Score=32.43 Aligned_cols=32 Identities=22% Similarity=0.344 Sum_probs=27.2
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEe
Q 025712 178 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITD 210 (249)
Q Consensus 178 ~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~ 210 (249)
.|++|+|.|+|.+|..-++.....|+ .|.+++
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~~ga-~V~VIs 43 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKDTGA-FVTVVS 43 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEc
Confidence 57899999999999998888888999 566663
No 351
>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional
Probab=89.90 E-value=3.1 Score=34.72 Aligned_cols=35 Identities=26% Similarity=0.263 Sum_probs=27.5
Q ss_pred CCCeEEEEc---CChHHHHHHHHHHHcCCCeEEEEeCCh
Q 025712 178 PETNVMIMG---SGPIGLVTLLAARAFGAPRIIITDVDV 213 (249)
Q Consensus 178 ~g~~vlI~G---~g~vG~~ai~la~~~G~~~vi~~~~~~ 213 (249)
+++++||.| ++++|.+..+.....|+ +|+.+.+.+
T Consensus 5 ~~k~~lITGa~~~~GIG~a~a~~l~~~G~-~v~~~~~~~ 42 (261)
T PRK08690 5 QGKKILITGMISERSIAYGIAKACREQGA-ELAFTYVVD 42 (261)
T ss_pred CCcEEEEECCCCCCcHHHHHHHHHHHCCC-EEEEEcCcH
Confidence 578999998 35899998888888999 677765443
No 352
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=89.87 E-value=1.2 Score=38.42 Aligned_cols=75 Identities=20% Similarity=0.423 Sum_probs=41.4
Q ss_pred CCceEECCCCCChhhhccccchHHHHHHHHHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHH
Q 025712 143 AKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN 221 (249)
Q Consensus 143 ~~~~~~ip~~~~~~~aa~~~~~~~a~~~l~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~ 221 (249)
...++.+.+++.+-.+.--.+ .....++... .++|++||=.|+|+ |.+++-.++ .|++.|+++|.++.-.+.+++
T Consensus 128 ~~~~I~idPg~AFGTG~H~TT-~lcl~~l~~~-~~~g~~vLDvG~GS-GILaiaA~k-lGA~~v~a~DiDp~Av~~a~~ 202 (295)
T PF06325_consen 128 DEIVIEIDPGMAFGTGHHPTT-RLCLELLEKY-VKPGKRVLDVGCGS-GILAIAAAK-LGAKKVVAIDIDPLAVEAARE 202 (295)
T ss_dssp TSEEEEESTTSSS-SSHCHHH-HHHHHHHHHH-SSTTSEEEEES-TT-SHHHHHHHH-TTBSEEEEEESSCHHHHHHHH
T ss_pred CcEEEEECCCCcccCCCCHHH-HHHHHHHHHh-ccCCCEEEEeCCcH-HHHHHHHHH-cCCCeEEEecCCHHHHHHHHH
Confidence 344555555554443321111 1112233443 57888888777543 455544444 599899999998877666644
No 353
>PRK14031 glutamate dehydrogenase; Provisional
Probab=89.81 E-value=1.2 Score=40.51 Aligned_cols=40 Identities=13% Similarity=0.215 Sum_probs=32.1
Q ss_pred HHHHcCC-CCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEe
Q 025712 170 ACRRANV-GPETNVMIMGSGPIGLVTLLAARAFGAPRIIITD 210 (249)
Q Consensus 170 ~l~~~~~-~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~ 210 (249)
+++..+. -.|.+|+|.|.|.||..+++++..+|+ +|+++.
T Consensus 218 ~~~~~g~~l~g~rVaVQGfGNVG~~aA~~L~e~GA-kVVaVS 258 (444)
T PRK14031 218 MLKTKGTDLKGKVCLVSGSGNVAQYTAEKVLELGG-KVVTMS 258 (444)
T ss_pred HHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEE
Confidence 3444333 368999999999999999999999999 677753
No 354
>cd01563 Thr-synth_1 Threonine synthase is a pyridoxal phosphate (PLP) dependent enzyme that catalyses the last reaction in the synthesis of threonine from aspartate. It proceeds by converting O-phospho-L-homoserine (OPH) into threonine and inorganic phosphate. In plants, OPH is an intermediate between the methionine and threonine/isoleucine pathways. Thus threonine synthase competes for OPH with cystathionine-gamma-synthase, the first enzyme in the methionine pathway. These enzymes are in general dimers. Members of this CD, Thr-synth_1, are widely distributed in bacteria, archaea and higher plants.
Probab=89.76 E-value=3.6 Score=35.63 Aligned_cols=50 Identities=18% Similarity=0.134 Sum_probs=39.3
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeC--ChhHHHHHHHcCCCEEe
Q 025712 179 ETNVMIMGSGPIGLVTLLAARAFGAPRIIITDV--DVQRLSIARNLGADETA 228 (249)
Q Consensus 179 g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~--~~~~~~~~~~~ga~~vi 228 (249)
+++++...+|..|.+....|+..|.+.++.+.. +..+.+.++.+|++.+.
T Consensus 70 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~l~~~GA~Vi~ 121 (324)
T cd01563 70 VKAVACASTGNTSASLAAYAARAGIKCVVFLPAGKALGKLAQALAYGATVLA 121 (324)
T ss_pred CCEEEEeCCCHHHHHHHHHHHHcCCceEEEEeCCCCHHHHHHHHHcCCEEEE
Confidence 455554458999999999999999976666643 56889999999987765
No 355
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=89.75 E-value=0.89 Score=36.24 Aligned_cols=57 Identities=19% Similarity=0.228 Sum_probs=39.6
Q ss_pred eEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCCCcccHHHHHHHH
Q 025712 181 NVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGRYKMQW 244 (249)
Q Consensus 181 ~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~ 244 (249)
+|.|+|.|-+|+-.....-..|. .|+++|.++++.+.+++ |-.++ . ++.+.+.+++.
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~G~-~V~g~D~~~~~v~~l~~-g~~p~---~--E~~l~~ll~~~ 58 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEKGH-QVIGVDIDEEKVEALNN-GELPI---Y--EPGLDELLKEN 58 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHTTS-EEEEE-S-HHHHHHHHT-TSSSS------CTTHHHHHHHH
T ss_pred EEEEECCCcchHHHHHHHHhCCC-EEEEEeCChHHHHHHhh-ccccc---c--ccchhhhhccc
Confidence 68899999999988888888999 89999999999999875 33322 1 25555555554
No 356
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=89.74 E-value=1.2 Score=42.53 Aligned_cols=47 Identities=21% Similarity=0.359 Sum_probs=41.8
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCE
Q 025712 179 ETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADE 226 (249)
Q Consensus 179 g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~ 226 (249)
.++++|.|.|.+|+...+..+..|. .+++++.++++.+.+++.|...
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~-~vvvID~d~~~v~~~~~~g~~v 446 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGV-KMTVLDHDPDHIETLRKFGMKV 446 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCC-CEEEEECCHHHHHHHHhcCCeE
Confidence 3678999999999999999999999 7999999999999998887543
No 357
>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=89.68 E-value=2.8 Score=34.34 Aligned_cols=41 Identities=22% Similarity=0.302 Sum_probs=29.9
Q ss_pred CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEE-eCChhHHHHH
Q 025712 178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIIT-DVDVQRLSIA 219 (249)
Q Consensus 178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~-~~~~~~~~~~ 219 (249)
.++++||+| +|++|...+......|+ +++.+ .++.++.+.+
T Consensus 4 ~~k~ilItGas~gIG~~la~~l~~~G~-~vv~~~~~~~~~~~~~ 46 (253)
T PRK08642 4 SEQTVLVTGGSRGLGAAIARAFAREGA-RVVVNYHQSEDAAEAL 46 (253)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHCCC-eEEEEcCCCHHHHHHH
Confidence 357899998 79999999988888999 56654 3344444433
No 358
>PRK08638 threonine dehydratase; Validated
Probab=89.63 E-value=3.4 Score=36.21 Aligned_cols=65 Identities=11% Similarity=0.080 Sum_probs=45.4
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCCeEEEEeC--ChhHHHHHHHcCCCEEecCCCCcccHHHHHHHHH
Q 025712 180 TNVMIMGSGPIGLVTLLAARAFGAPRIIITDV--DVQRLSIARNLGADETAKVSTDIEMWGRYKMQWV 245 (249)
Q Consensus 180 ~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~--~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~ 245 (249)
+.|+..++|..|.+....|+..|.+.++.+.. +++|.+.++.+||+.++- ..+..+..+..+++.
T Consensus 76 ~~vv~~SsGN~g~alA~~aa~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~-~~~~~~~~~~a~~~a 142 (333)
T PRK08638 76 KGVVACSAGNHAQGVALSCALLGIDGKVVMPKGAPKSKVAATCGYGAEVVLH-GDNFNDTIAKVEEIV 142 (333)
T ss_pred CeEEEeCCcHHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHcCCEEEEE-CcCHHHHHHHHHHHH
Confidence 34554568999999999999999977777654 567899999999987753 222233434444443
No 359
>PRK14030 glutamate dehydrogenase; Provisional
Probab=89.60 E-value=1.4 Score=40.15 Aligned_cols=53 Identities=17% Similarity=0.167 Sum_probs=36.8
Q ss_pred hhhccccchHHHHHHHHHcCC-CCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEE
Q 025712 156 EEGAMCEPLSVGVHACRRANV-GPETNVMIMGSGPIGLVTLLAARAFGAPRIIIT 209 (249)
Q Consensus 156 ~~aa~~~~~~~a~~~l~~~~~-~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~ 209 (249)
.+|.....+...-.+++..+. -.|.+|+|.|.|.||..+++++...|+ +|+++
T Consensus 204 ~~ATg~Gv~~~~~~~~~~~g~~l~g~~vaIQGfGnVG~~aA~~L~e~Ga-kvVav 257 (445)
T PRK14030 204 PEATGFGALYFVHQMLETKGIDIKGKTVAISGFGNVAWGAATKATELGA-KVVTI 257 (445)
T ss_pred CCccHHHHHHHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEE
Confidence 334333333333334444443 368999999999999999999999999 77774
No 360
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=89.57 E-value=5.1 Score=36.44 Aligned_cols=58 Identities=21% Similarity=0.293 Sum_probs=45.1
Q ss_pred HHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeC--ChhHHHHHHHcCCCEEec
Q 025712 172 RRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDV--DVQRLSIARNLGADETAK 229 (249)
Q Consensus 172 ~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~--~~~~~~~~~~~ga~~vi~ 229 (249)
....+.+|++++-..+|..|.+....|+.+|.+.++.+.. +++|.+.++.+||+.+.-
T Consensus 55 ~~g~~~~g~~vv~~ssGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~ 114 (454)
T TIGR01137 55 ASGRLKPGDTIIEPTSGNTGIGLALVAAIKGYKCIIVLPEKMSNEKVDVLKALGAEIVRT 114 (454)
T ss_pred HcCCCCCCCEEEEeCCcHHHHHHHHHHHHcCCeEEEEeCCCcCHHHHHHHHHCCCEEEEc
Confidence 3445567777655568999999999999999966666643 568999999999987654
No 361
>PRK07048 serine/threonine dehydratase; Validated
Probab=89.50 E-value=3.1 Score=36.11 Aligned_cols=50 Identities=22% Similarity=0.374 Sum_probs=39.1
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCCeEEEEeC--ChhHHHHHHHcCCCEEec
Q 025712 180 TNVMIMGSGPIGLVTLLAARAFGAPRIIITDV--DVQRLSIARNLGADETAK 229 (249)
Q Consensus 180 ~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~--~~~~~~~~~~~ga~~vi~ 229 (249)
+.|+..++|..|.+....|+.+|++.++.+.. ++.|.+.++.+|++.++.
T Consensus 73 ~~vv~aSsGN~g~alA~~a~~~G~~~~vvvp~~~~~~k~~~~~~~GAeV~~~ 124 (321)
T PRK07048 73 AGVVTFSSGNHAQAIALSARLLGIPATIVMPQDAPAAKVAATRGYGGEVVTY 124 (321)
T ss_pred CcEEEeCCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHCCCEEEEE
Confidence 34444468999999999999999976666643 457889999999987654
No 362
>PRK12938 acetyacetyl-CoA reductase; Provisional
Probab=89.43 E-value=3 Score=34.11 Aligned_cols=31 Identities=16% Similarity=0.233 Sum_probs=25.6
Q ss_pred CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEE
Q 025712 178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIIT 209 (249)
Q Consensus 178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~ 209 (249)
++++++|.| +|++|...++.....|+ ++++.
T Consensus 2 ~~k~~lVtG~s~giG~~~a~~l~~~G~-~vv~~ 33 (246)
T PRK12938 2 SQRIAYVTGGMGGIGTSICQRLHKDGF-KVVAG 33 (246)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHcCC-EEEEE
Confidence 367889998 79999999999999999 56654
No 363
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=89.43 E-value=1.2 Score=42.18 Aligned_cols=46 Identities=26% Similarity=0.354 Sum_probs=41.1
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCE
Q 025712 180 TNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADE 226 (249)
Q Consensus 180 ~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~ 226 (249)
++++|.|.|.+|+...+..+..|. .++++|.++++.+.+++.|...
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~-~vvvID~d~~~v~~~~~~g~~v 446 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMANKM-RITVLERDISAVNLMRKYGYKV 446 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhCCC-CEEEEECCHHHHHHHHhCCCeE
Confidence 578889999999999999999999 7999999999999998887543
No 364
>PRK06484 short chain dehydrogenase; Validated
Probab=89.41 E-value=3.1 Score=38.45 Aligned_cols=47 Identities=28% Similarity=0.301 Sum_probs=38.0
Q ss_pred CCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHH-cCC
Q 025712 177 GPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN-LGA 224 (249)
Q Consensus 177 ~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~-~ga 224 (249)
..++++||.| ++++|.+.++.....|+ +|+.++++.++.+.+.+ ++.
T Consensus 267 ~~~k~~lItGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~ 315 (520)
T PRK06484 267 ESPRVVAITGGARGIGRAVADRFAAAGD-RLLIIDRDAEGAKKLAEALGD 315 (520)
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCC
Confidence 3578899998 79999998888888999 78989888887776654 443
No 365
>PRK07102 short chain dehydrogenase; Provisional
Probab=89.41 E-value=1.3 Score=36.31 Aligned_cols=38 Identities=29% Similarity=0.435 Sum_probs=31.6
Q ss_pred CeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHH
Q 025712 180 TNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSI 218 (249)
Q Consensus 180 ~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~ 218 (249)
++++|.| +|++|...++.....|+ .|+++++++++.+.
T Consensus 2 ~~vlItGas~giG~~~a~~l~~~G~-~Vi~~~r~~~~~~~ 40 (243)
T PRK07102 2 KKILIIGATSDIARACARRYAAAGA-RLYLAARDVERLER 40 (243)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhcCC-EEEEEeCCHHHHHH
Confidence 5789997 79999998888888899 78888888876544
No 366
>PRK06721 threonine synthase; Reviewed
Probab=89.30 E-value=3.8 Score=36.11 Aligned_cols=50 Identities=20% Similarity=0.226 Sum_probs=39.1
Q ss_pred CeEEEE-cCChHHHHHHHHHHHcCCCeEEEEeC---ChhHHHHHHHcCCCEEec
Q 025712 180 TNVMIM-GSGPIGLVTLLAARAFGAPRIIITDV---DVQRLSIARNLGADETAK 229 (249)
Q Consensus 180 ~~vlI~-G~g~vG~~ai~la~~~G~~~vi~~~~---~~~~~~~~~~~ga~~vi~ 229 (249)
...+|. .+|..|.++...|+..|.+.++.+.. ++.|.+.++.+||+.++.
T Consensus 75 ~~~vV~aSsGN~G~alA~~aa~~G~~~~vvvp~~~~~~~k~~~~~~~GA~V~~~ 128 (352)
T PRK06721 75 SEAIICASTGNTSASAAAYAARLGMKCIIVIPEGKIAHGKLAQAVAYGAEIISI 128 (352)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCCHHHHHHHHHcCCEEEEE
Confidence 344554 48999999999999999977777753 357899999999987654
No 367
>PLN03139 formate dehydrogenase; Provisional
Probab=89.29 E-value=0.93 Score=40.52 Aligned_cols=46 Identities=22% Similarity=0.339 Sum_probs=36.4
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCC
Q 025712 178 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGA 224 (249)
Q Consensus 178 ~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga 224 (249)
.|++|.|+|.|.+|...++.++.+|+ ++++.+++....+..++.|+
T Consensus 198 ~gktVGIVG~G~IG~~vA~~L~afG~-~V~~~d~~~~~~~~~~~~g~ 243 (386)
T PLN03139 198 EGKTVGTVGAGRIGRLLLQRLKPFNC-NLLYHDRLKMDPELEKETGA 243 (386)
T ss_pred CCCEEEEEeecHHHHHHHHHHHHCCC-EEEEECCCCcchhhHhhcCc
Confidence 68899999999999999999999999 78888876544344444443
No 368
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=89.28 E-value=1.4 Score=36.76 Aligned_cols=40 Identities=25% Similarity=0.307 Sum_probs=32.1
Q ss_pred CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHH
Q 025712 178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSI 218 (249)
Q Consensus 178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~ 218 (249)
.+++++|.| ++++|...+......|+ +++.+++++++.+.
T Consensus 9 ~~k~~lItGa~~~iG~~ia~~l~~~G~-~vv~~~~~~~~~~~ 49 (265)
T PRK07097 9 KGKIALITGASYGIGFAIAKAYAKAGA-TIVFNDINQELVDK 49 (265)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHH
Confidence 568899998 79999988887788899 68888877766543
No 369
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=89.28 E-value=3.8 Score=34.31 Aligned_cols=35 Identities=17% Similarity=0.195 Sum_probs=27.7
Q ss_pred CCCeEEEEcC-C--hHHHHHHHHHHHcCCCeEEEEeCCh
Q 025712 178 PETNVMIMGS-G--PIGLVTLLAARAFGAPRIIITDVDV 213 (249)
Q Consensus 178 ~g~~vlI~G~-g--~vG~~ai~la~~~G~~~vi~~~~~~ 213 (249)
.+++++|.|+ + ++|.+..+.....|+ +++.+++++
T Consensus 5 ~~k~~lITGas~~~GIG~aia~~la~~G~-~vil~~r~~ 42 (262)
T PRK07984 5 SGKRILVTGVASKLSIAYGIAQAMHREGA-ELAFTYQND 42 (262)
T ss_pred CCCEEEEeCCCCCccHHHHHHHHHHHCCC-EEEEEecch
Confidence 5789999984 3 899998888888999 677776653
No 370
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=89.26 E-value=1.5 Score=36.77 Aligned_cols=34 Identities=21% Similarity=0.234 Sum_probs=30.0
Q ss_pred CCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeC
Q 025712 177 GPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDV 211 (249)
Q Consensus 177 ~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~ 211 (249)
-+|.+++|.|.|.||+.+.+++..+|+ +++++..
T Consensus 36 l~g~~vaIqGfGnVG~~~a~~L~e~Ga-kvvaVsD 69 (254)
T cd05313 36 LKGKRVAISGSGNVAQYAAEKLLELGA-KVVTLSD 69 (254)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEEC
Confidence 368999999999999999999999999 7886643
No 371
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=89.26 E-value=2.4 Score=33.76 Aligned_cols=57 Identities=23% Similarity=0.323 Sum_probs=42.5
Q ss_pred HHHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHH----HcCCCEEe
Q 025712 171 CRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR----NLGADETA 228 (249)
Q Consensus 171 l~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~----~~ga~~vi 228 (249)
+...++++|+.++=.|+|. |...+++++.....++++++++++..+..+ +||.+.+.
T Consensus 27 ls~L~~~~g~~l~DIGaGt-Gsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~ 87 (187)
T COG2242 27 LSKLRPRPGDRLWDIGAGT-GSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLE 87 (187)
T ss_pred HHhhCCCCCCEEEEeCCCc-cHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEE
Confidence 3557889999776667654 666778886666668999999999988874 57876443
No 372
>PLN00011 cysteine synthase
Probab=89.23 E-value=6.7 Score=34.12 Aligned_cols=59 Identities=20% Similarity=0.272 Sum_probs=44.8
Q ss_pred HHHcCCCCC-CeEEEEcCChHHHHHHHHHHHcCCCeEEEEeC--ChhHHHHHHHcCCCEEec
Q 025712 171 CRRANVGPE-TNVMIMGSGPIGLVTLLAARAFGAPRIIITDV--DVQRLSIARNLGADETAK 229 (249)
Q Consensus 171 l~~~~~~~g-~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~--~~~~~~~~~~~ga~~vi~ 229 (249)
.+...+.++ ++|+...+|..|++....|+.+|.+.++.+.. ++.|.++++.+|++.++.
T Consensus 60 ~~~g~~~~g~~~vv~aSsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~i~~~GA~V~~~ 121 (323)
T PLN00011 60 EDKGLITPGKSTLIEATAGNTGIGLACIGAARGYKVILVMPSTMSLERRIILRALGAEVHLT 121 (323)
T ss_pred HHcCCCCCCCcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEE
Confidence 345567777 45544348999999999999999976666643 468999999999987653
No 373
>PRK07574 formate dehydrogenase; Provisional
Probab=89.14 E-value=1.1 Score=40.11 Aligned_cols=35 Identities=31% Similarity=0.464 Sum_probs=31.8
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCCh
Q 025712 178 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDV 213 (249)
Q Consensus 178 ~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~ 213 (249)
.|++|.|+|.|.+|+...+.++.+|+ +|++.+++.
T Consensus 191 ~gktVGIvG~G~IG~~vA~~l~~fG~-~V~~~dr~~ 225 (385)
T PRK07574 191 EGMTVGIVGAGRIGLAVLRRLKPFDV-KLHYTDRHR 225 (385)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEECCCC
Confidence 57889999999999999999999999 899998765
No 374
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.13 E-value=1.6 Score=40.11 Aligned_cols=49 Identities=14% Similarity=0.256 Sum_probs=38.2
Q ss_pred CCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHH-HHHHcCCCE
Q 025712 177 GPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLS-IARNLGADE 226 (249)
Q Consensus 177 ~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~-~~~~~ga~~ 226 (249)
-.+++|+|+|.|+.|.+++.+++..|+ .|.+.+++..+.. +++++|+..
T Consensus 13 ~~~~~v~v~G~G~sG~a~a~~L~~~G~-~V~~~D~~~~~~~~~l~~~gi~~ 62 (473)
T PRK00141 13 ELSGRVLVAGAGVSGRGIAAMLSELGC-DVVVADDNETARHKLIEVTGVAD 62 (473)
T ss_pred ccCCeEEEEccCHHHHHHHHHHHHCCC-EEEEECCChHHHHHHHHhcCcEE
Confidence 456789999999999999999999999 8899987655443 345566543
No 375
>PRK02991 D-serine dehydratase; Provisional
Probab=89.10 E-value=2.7 Score=38.33 Aligned_cols=63 Identities=14% Similarity=0.124 Sum_probs=45.4
Q ss_pred EEEEc-CChHHHHHHHHHHHcCCCeEEEEe--CChhHHHHHHHcCCCEEecCCCCcccHHHHHHHHH
Q 025712 182 VMIMG-SGPIGLVTLLAARAFGAPRIIITD--VDVQRLSIARNLGADETAKVSTDIEMWGRYKMQWV 245 (249)
Q Consensus 182 vlI~G-~g~vG~~ai~la~~~G~~~vi~~~--~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~ 245 (249)
-+|.+ +|..|++....|+.+|.+.+|.+. .++.|.+.++.+|++.++ +..+..+..+..+++.
T Consensus 159 ~VV~aSsGN~G~alA~aA~~~G~~~tIvvP~~a~~~K~~~ir~~GAeVi~-~~~~~~~a~~~A~~la 224 (441)
T PRK02991 159 SIAVGSTGNLGLSIGIMSAALGFKVTVHMSADARQWKKDKLRSHGVTVVE-YEGDYGVAVEEGRKAA 224 (441)
T ss_pred EEEEECCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEE-ECCCHHHHHHHHHHHH
Confidence 35555 799999999999999998777774 477999999999997765 2322234444444443
No 376
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=89.08 E-value=2.6 Score=34.57 Aligned_cols=38 Identities=18% Similarity=0.160 Sum_probs=29.0
Q ss_pred CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEE-EeCChhHH
Q 025712 178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIII-TDVDVQRL 216 (249)
Q Consensus 178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~-~~~~~~~~ 216 (249)
++++++|.| +|++|...+......|+ .++. ..++.++.
T Consensus 3 ~~~~vlItGa~g~iG~~~a~~l~~~g~-~v~~~~~r~~~~~ 42 (250)
T PRK08063 3 SGKVALVTGSSRGIGKAIALRLAEEGY-DIAVNYARSRKAA 42 (250)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHH
Confidence 467899998 79999999888888999 5554 45555544
No 377
>PRK07409 threonine synthase; Validated
Probab=89.05 E-value=3.9 Score=36.02 Aligned_cols=63 Identities=13% Similarity=0.089 Sum_probs=43.6
Q ss_pred eEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCC---hhHHHHHHHcCCCEEecCCCCcccHHHHHHHH
Q 025712 181 NVMIMG-SGPIGLVTLLAARAFGAPRIIITDVD---VQRLSIARNLGADETAKVSTDIEMWGRYKMQW 244 (249)
Q Consensus 181 ~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~---~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~ 244 (249)
.-+|.. +|..|.++...|+..|.+.++.+..+ ..|.+.++.+|++.++- .....+..+.++++
T Consensus 79 ~~iv~aSsGN~g~alA~~a~~~G~~~~ivvP~~~~~~~k~~~~~~~GA~Vi~~-~~~~~~~~~~a~~l 145 (353)
T PRK07409 79 KAVICASTGNTSASAAAYAARAGLKAFVLIPEGKIALGKLAQAVMYGAEIIQI-DGNFDDALEIVREL 145 (353)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEEcCCCCchhhHHHHHhcCCEEEEE-CCCHHHHHHHHHHH
Confidence 345554 79999999999999999767777643 57899999999877653 22223444444443
No 378
>COG1171 IlvA Threonine dehydratase [Amino acid transport and metabolism]
Probab=89.01 E-value=3.7 Score=36.05 Aligned_cols=79 Identities=11% Similarity=0.101 Sum_probs=51.8
Q ss_pred HHHHHHHcCCC-CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEE--eCChhHHHHHHHcCCCEEecCCCCcccHHHHHH
Q 025712 167 GVHACRRANVG-PETNVMIMG-SGPIGLVTLLAARAFGAPRIIIT--DVDVQRLSIARNLGADETAKVSTDIEMWGRYKM 242 (249)
Q Consensus 167 a~~~l~~~~~~-~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~--~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~ 242 (249)
||+.+...... .-..-+|.. +|.=|+....-|+.+|.+.+|.+ ..+..|.+..+.+|++.++. ....++-.+..+
T Consensus 60 A~n~i~~Ls~e~~~~~gViaaSaGNHaQGvA~aa~~lGi~a~IvMP~~tp~~Kv~a~r~~GaeVil~-g~~~dda~~~a~ 138 (347)
T COG1171 60 AYNKLSSLSEEEERAAGVIAASAGNHAQGVAYAAKRLGIKATIVMPETTPKIKVDATRGYGAEVILH-GDNFDDAYAAAE 138 (347)
T ss_pred HHHHHHhcChhhhhcCceEEecCCcHHHHHHHHHHHhCCCEEEEecCCCcHHHHHHHHhcCCEEEEE-CCCHHHHHHHHH
Confidence 56665443222 122225554 79999999999999999888887 44678899999999966553 433344444444
Q ss_pred HHHH
Q 025712 243 QWVQ 246 (249)
Q Consensus 243 ~~~~ 246 (249)
++++
T Consensus 139 ~~a~ 142 (347)
T COG1171 139 ELAE 142 (347)
T ss_pred HHHH
Confidence 4443
No 379
>PRK07775 short chain dehydrogenase; Provisional
Probab=89.00 E-value=4.2 Score=34.11 Aligned_cols=39 Identities=21% Similarity=0.298 Sum_probs=30.8
Q ss_pred CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHH
Q 025712 178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLS 217 (249)
Q Consensus 178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~ 217 (249)
+.++++|+| +|++|.+.++.+...|+ +|+++.++.++.+
T Consensus 9 ~~~~vlVtGa~g~iG~~la~~L~~~G~-~V~~~~r~~~~~~ 48 (274)
T PRK07775 9 DRRPALVAGASSGIGAATAIELAAAGF-PVALGARRVEKCE 48 (274)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHH
Confidence 346899998 79999999988888999 7777777665543
No 380
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=88.99 E-value=1.5 Score=36.20 Aligned_cols=40 Identities=18% Similarity=0.333 Sum_probs=32.2
Q ss_pred CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHH
Q 025712 178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSI 218 (249)
Q Consensus 178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~ 218 (249)
.+++++|.| ++++|...+......|+ .++.++++.++.+.
T Consensus 10 ~~k~vlVtG~s~gIG~~la~~l~~~G~-~vv~~~r~~~~~~~ 50 (255)
T PRK06113 10 DGKCAIITGAGAGIGKEIAITFATAGA-SVVVSDINADAANH 50 (255)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHH
Confidence 478999998 79999999888888999 67777777665443
No 381
>PRK06110 hypothetical protein; Provisional
Probab=88.92 E-value=5.1 Score=34.81 Aligned_cols=48 Identities=27% Similarity=0.344 Sum_probs=38.9
Q ss_pred EEEEc-CChHHHHHHHHHHHcCCCeEEEEeC--ChhHHHHHHHcCCCEEec
Q 025712 182 VMIMG-SGPIGLVTLLAARAFGAPRIIITDV--DVQRLSIARNLGADETAK 229 (249)
Q Consensus 182 vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~--~~~~~~~~~~~ga~~vi~ 229 (249)
.+|.+ +|..|++....|+.+|.+.+|.+.. ++.|.+.++.+|++.+..
T Consensus 72 ~vv~aSsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~i~~~GA~V~~~ 122 (322)
T PRK06110 72 GVISATRGNHGQSVAFAARRHGLAATIVVPHGNSVEKNAAMRALGAELIEH 122 (322)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEE
Confidence 35655 7999999999999999977777753 467889999999887653
No 382
>PRK05638 threonine synthase; Validated
Probab=88.89 E-value=3.7 Score=37.43 Aligned_cols=65 Identities=11% Similarity=0.120 Sum_probs=45.4
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeC--ChhHHHHHHHcCCCEEecCCCCcccHHHHHHHH
Q 025712 179 ETNVMIMGSGPIGLVTLLAARAFGAPRIIITDV--DVQRLSIARNLGADETAKVSTDIEMWGRYKMQW 244 (249)
Q Consensus 179 g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~--~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~ 244 (249)
.++|+...+|..|.+....|+..|.+.+|.+.. +..|...++.+||+.+.. ..+..++.+..+++
T Consensus 112 ~~~vv~aSsGN~g~alA~~aa~~G~~~~i~vp~~~~~~k~~~~~~~GA~vi~v-~~~~~~~~~~a~~~ 178 (442)
T PRK05638 112 ANGFIVASDGNAAASVAAYSARAGKEAFVVVPRKVDKGKLIQMIAFGAKIIRY-GESVDEAIEYAEEL 178 (442)
T ss_pred CCEEEEeCCChHHHHHHHHHHHcCCCEEEEEeCCCCHHHHHHHHhcCcEEEEE-CCCHHHHHHHHHHH
Confidence 344444348999999999999999977777743 568899999999987654 23334444444443
No 383
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=88.82 E-value=1.1 Score=39.15 Aligned_cols=47 Identities=23% Similarity=0.375 Sum_probs=36.7
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCE
Q 025712 178 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADE 226 (249)
Q Consensus 178 ~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~ 226 (249)
.|+++-|+|.|.+|++..+.++.+|. .++..+++.. .+..+++++.+
T Consensus 145 ~gktvGIiG~GrIG~avA~r~~~Fgm-~v~y~~~~~~-~~~~~~~~~~y 191 (324)
T COG1052 145 RGKTLGIIGLGRIGQAVARRLKGFGM-KVLYYDRSPN-PEAEKELGARY 191 (324)
T ss_pred CCCEEEEECCCHHHHHHHHHHhcCCC-EEEEECCCCC-hHHHhhcCcee
Confidence 58999999999999999999999999 7888877654 33333344444
No 384
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=88.80 E-value=4.4 Score=33.31 Aligned_cols=74 Identities=20% Similarity=0.293 Sum_probs=59.6
Q ss_pred HHHHHHHcCCCCCCeEEEE-cCChHHHHHHHHHHH-cCCCeEEEEeCChhHHHHHHHcCCCEEecCCCCcccHHHHHHH
Q 025712 167 GVHACRRANVGPETNVMIM-GSGPIGLVTLLAARA-FGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGRYKMQ 243 (249)
Q Consensus 167 a~~~l~~~~~~~g~~vlI~-G~g~vG~~ai~la~~-~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~ 243 (249)
--..|..+.+..-+.+++. |..-+-..++++++. +|..++++-..++...+.++++|+++++... ..+...+..
T Consensus 55 ~~~~L~~agi~~aD~vva~t~~d~~N~i~~~la~~~~gv~~viar~~~~~~~~~~~~~g~~~ii~Pe---~~~~~~l~~ 130 (225)
T COG0569 55 DEDVLEEAGIDDADAVVAATGNDEVNSVLALLALKEFGVPRVIARARNPEHEKVLEKLGADVIISPE---KLAAKRLAR 130 (225)
T ss_pred CHHHHHhcCCCcCCEEEEeeCCCHHHHHHHHHHHHhcCCCcEEEEecCHHHHHHHHHcCCcEEECHH---HHHHHHHHH
Confidence 3445677888888888775 788889999999977 8999999999999999999999999998544 455555544
No 385
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=88.79 E-value=1.9 Score=36.84 Aligned_cols=59 Identities=15% Similarity=0.116 Sum_probs=42.1
Q ss_pred HHHcC-CCCCCeEEEEcCCh-HHHHHHHHHHHcCCCeEEEEeCChhHHHHHHH-cCCCEEecCCC
Q 025712 171 CRRAN-VGPETNVMIMGSGP-IGLVTLLAARAFGAPRIIITDVDVQRLSIARN-LGADETAKVST 232 (249)
Q Consensus 171 l~~~~-~~~g~~vlI~G~g~-vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~-~ga~~vi~~~~ 232 (249)
++..+ --.|++++|.|.|+ +|.....++...|+ +|..+.+....+ .+. .+++.+|+...
T Consensus 150 L~~~~i~l~Gk~vvViG~gg~vGkpia~~L~~~ga-tVtv~~~~t~~L--~~~~~~aDIvI~AtG 211 (283)
T PRK14192 150 LKAYNIELAGKHAVVVGRSAILGKPMAMMLLNANA-TVTICHSRTQNL--PELVKQADIIVGAVG 211 (283)
T ss_pred HHHcCCCCCCCEEEEECCcHHHHHHHHHHHHhCCC-EEEEEeCCchhH--HHHhccCCEEEEccC
Confidence 34443 35789999999876 99999999999999 777776533322 222 36888887663
No 386
>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=88.74 E-value=1.6 Score=36.23 Aligned_cols=46 Identities=13% Similarity=0.172 Sum_probs=38.1
Q ss_pred eEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEe
Q 025712 181 NVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETA 228 (249)
Q Consensus 181 ~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi 228 (249)
++||.| +|.+|...++-+...|. .|.+..++.++..... .+++.+.
T Consensus 2 ~ilV~GatG~~G~~~~~~L~~~~~-~v~~~~r~~~~~~~~~-~~v~~~~ 48 (275)
T COG0702 2 KILVTGATGFVGGAVVRELLARGH-EVRAAVRNPEAAAALA-GGVEVVL 48 (275)
T ss_pred eEEEEecccchHHHHHHHHHhCCC-EEEEEEeCHHHHHhhc-CCcEEEE
Confidence 688987 79999999999999998 7888888988888887 5555544
No 387
>PRK08329 threonine synthase; Validated
Probab=88.70 E-value=4.3 Score=35.71 Aligned_cols=50 Identities=22% Similarity=0.255 Sum_probs=39.0
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCCeEEEEe--CChhHHHHHHHcCCCEEec
Q 025712 180 TNVMIMGSGPIGLVTLLAARAFGAPRIIITD--VDVQRLSIARNLGADETAK 229 (249)
Q Consensus 180 ~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~--~~~~~~~~~~~~ga~~vi~ 229 (249)
++|+...+|..|.+....|+..|.+.+|.+. .+..|+..++.+|++.++.
T Consensus 105 ~~vv~aSsGN~g~alA~~aa~~G~~~~v~vp~~~~~~k~~~~~~~GA~v~~v 156 (347)
T PRK08329 105 NEVVIDSSGNAALSLALYSLSEGIKVHVFVSYNASKEKISLLSRLGAELHFV 156 (347)
T ss_pred CEEEEECCCcHHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHHcCCEEEEE
Confidence 4454446899999999999999997666664 3457899999999977653
No 388
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=88.69 E-value=1 Score=38.89 Aligned_cols=65 Identities=18% Similarity=0.260 Sum_probs=47.2
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCCCcccHHHHHHH
Q 025712 178 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGRYKMQ 243 (249)
Q Consensus 178 ~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~ 243 (249)
+..+|.|+|.|.+|.-+..+|--+|+ .|...+.+.+|+..++.+-..++--..+....+.+++.+
T Consensus 167 ~~~kv~iiGGGvvgtnaAkiA~glgA-~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~ 231 (371)
T COG0686 167 LPAKVVVLGGGVVGTNAAKIAIGLGA-DVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKK 231 (371)
T ss_pred CCccEEEECCccccchHHHHHhccCC-eeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhh
Confidence 34566778999999999999999999 799999999999999875433332223333455555543
No 389
>PRK06940 short chain dehydrogenase; Provisional
Probab=88.66 E-value=1.5 Score=36.99 Aligned_cols=39 Identities=23% Similarity=0.457 Sum_probs=29.7
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712 179 ETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA 219 (249)
Q Consensus 179 g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~ 219 (249)
+++++|.|+|++|.+.+.... .|+ +|+.+++++++.+.+
T Consensus 2 ~k~~lItGa~gIG~~la~~l~-~G~-~Vv~~~r~~~~~~~~ 40 (275)
T PRK06940 2 KEVVVVIGAGGIGQAIARRVG-AGK-KVLLADYNEENLEAA 40 (275)
T ss_pred CCEEEEECCChHHHHHHHHHh-CCC-EEEEEeCCHHHHHHH
Confidence 357788898899998887774 798 788888877665433
No 390
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=88.61 E-value=1.6 Score=37.28 Aligned_cols=43 Identities=21% Similarity=0.268 Sum_probs=34.9
Q ss_pred eEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCC
Q 025712 181 NVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGA 224 (249)
Q Consensus 181 ~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga 224 (249)
+|+|+|+|.+|.+........|. .|..++++.++.+.+++.|.
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~-~V~~~~r~~~~~~~~~~~g~ 44 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGH-DVTLVARRGAHLDALNENGL 44 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCC-eEEEEECChHHHHHHHHcCC
Confidence 58899999999987777777888 68888887788877776665
No 391
>PRK06381 threonine synthase; Validated
Probab=88.57 E-value=5 Score=34.75 Aligned_cols=53 Identities=19% Similarity=0.224 Sum_probs=41.5
Q ss_pred CCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeC--ChhHHHHHHHcCCCEEecCC
Q 025712 179 ETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDV--DVQRLSIARNLGADETAKVS 231 (249)
Q Consensus 179 g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~--~~~~~~~~~~~ga~~vi~~~ 231 (249)
|.+.+|.+ +|..|.+....|+..|++.++.+.. +..|.+.++.+|++.++...
T Consensus 62 g~~~lv~aSsGN~g~alA~~aa~~G~~~~ivvp~~~~~~~~~~l~~~GA~V~~~~~ 117 (319)
T PRK06381 62 GYSGITVGTCGNYGASIAYFARLYGLKAVIFIPRSYSNSRVKEMEKYGAEIIYVDG 117 (319)
T ss_pred CCCEEEEeCCcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHcCCEEEEcCC
Confidence 44555665 7999999999999999976666643 46889999999999876543
No 392
>PRK14967 putative methyltransferase; Provisional
Probab=88.53 E-value=2.5 Score=34.56 Aligned_cols=49 Identities=27% Similarity=0.407 Sum_probs=38.2
Q ss_pred HHHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHH
Q 025712 171 CRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN 221 (249)
Q Consensus 171 l~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~ 221 (249)
+....+++++++|-.|+|. |..++.+++. ++.++++++.+++..+.+++
T Consensus 29 l~~~~~~~~~~vLDlGcG~-G~~~~~la~~-~~~~v~~vD~s~~~l~~a~~ 77 (223)
T PRK14967 29 LAAEGLGPGRRVLDLCTGS-GALAVAAAAA-GAGSVTAVDISRRAVRSARL 77 (223)
T ss_pred HHhcccCCCCeEEEecCCH-HHHHHHHHHc-CCCeEEEEECCHHHHHHHHH
Confidence 3445678899999999877 8888888875 55589999999888776544
No 393
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=88.50 E-value=2.8 Score=36.59 Aligned_cols=58 Identities=17% Similarity=0.312 Sum_probs=43.6
Q ss_pred HHHHcCCCCCCeEEEEcCChHHHHHHHHHHHcCC-CeEEEEeCChhHHHHHH----HcCCCEEe
Q 025712 170 ACRRANVGPETNVMIMGSGPIGLVTLLAARAFGA-PRIIITDVDVQRLSIAR----NLGADETA 228 (249)
Q Consensus 170 ~l~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~-~~vi~~~~~~~~~~~~~----~~ga~~vi 228 (249)
.++...++++++||.+|+|. |..++.+++..+. ..|++++.+++..+.++ ++|.+.+.
T Consensus 72 ll~~L~i~~g~~VLDIG~Gt-G~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~ 134 (322)
T PRK13943 72 FMEWVGLDKGMRVLEIGGGT-GYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVI 134 (322)
T ss_pred HHHhcCCCCCCEEEEEeCCc-cHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEE
Confidence 34556788999999999874 9999999998764 36999999988766554 46665433
No 394
>PRK06128 oxidoreductase; Provisional
Probab=88.43 E-value=3.6 Score=35.04 Aligned_cols=33 Identities=27% Similarity=0.341 Sum_probs=27.2
Q ss_pred CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeC
Q 025712 178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDV 211 (249)
Q Consensus 178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~ 211 (249)
.++++||.| +|++|.+.+......|+ +|+.+..
T Consensus 54 ~~k~vlITGas~gIG~~~a~~l~~~G~-~V~i~~~ 87 (300)
T PRK06128 54 QGRKALITGADSGIGRATAIAFAREGA-DIALNYL 87 (300)
T ss_pred CCCEEEEecCCCcHHHHHHHHHHHcCC-EEEEEeC
Confidence 478999998 79999998888888999 6766644
No 395
>PRK09224 threonine dehydratase; Reviewed
Probab=88.39 E-value=3.8 Score=38.08 Aligned_cols=48 Identities=19% Similarity=0.271 Sum_probs=38.6
Q ss_pred EEEE-cCChHHHHHHHHHHHcCCCeEEEEeC--ChhHHHHHHHcCCCEEec
Q 025712 182 VMIM-GSGPIGLVTLLAARAFGAPRIIITDV--DVQRLSIARNLGADETAK 229 (249)
Q Consensus 182 vlI~-G~g~vG~~ai~la~~~G~~~vi~~~~--~~~~~~~~~~~ga~~vi~ 229 (249)
-+|. ++|.-|++....|+..|.+.+|.+.. +..|.+.++.+|++.++.
T Consensus 70 gvV~aSaGNha~avA~aa~~lGi~~~IvmP~~tp~~K~~~~r~~GA~Vi~~ 120 (504)
T PRK09224 70 GVITASAGNHAQGVALSAARLGIKAVIVMPVTTPDIKVDAVRAFGGEVVLH 120 (504)
T ss_pred EEEEECcCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEE
Confidence 3554 68999999999999999977777743 457888999999977654
No 396
>PRK12367 short chain dehydrogenase; Provisional
Probab=88.39 E-value=2.7 Score=34.94 Aligned_cols=35 Identities=31% Similarity=0.330 Sum_probs=29.4
Q ss_pred CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCCh
Q 025712 178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDV 213 (249)
Q Consensus 178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~ 213 (249)
.+++++|.| +|++|.+.++.....|+ .|+++++++
T Consensus 13 ~~k~~lITGas~gIG~ala~~l~~~G~-~Vi~~~r~~ 48 (245)
T PRK12367 13 QGKRIGITGASGALGKALTKAFRAKGA-KVIGLTHSK 48 (245)
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEECCc
Confidence 368999998 69999999988888999 788877665
No 397
>PRK12743 oxidoreductase; Provisional
Probab=88.35 E-value=4.3 Score=33.53 Aligned_cols=36 Identities=22% Similarity=0.194 Sum_probs=28.2
Q ss_pred CCeEEEEc-CChHHHHHHHHHHHcCCCeEEEE-eCChhH
Q 025712 179 ETNVMIMG-SGPIGLVTLLAARAFGAPRIIIT-DVDVQR 215 (249)
Q Consensus 179 g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~-~~~~~~ 215 (249)
++++||.| +|++|...++.+...|+ +|+.+ .++.++
T Consensus 2 ~k~vlItGas~giG~~~a~~l~~~G~-~V~~~~~~~~~~ 39 (256)
T PRK12743 2 AQVAIVTASDSGIGKACALLLAQQGF-DIGITWHSDEEG 39 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCChHH
Confidence 57899998 79999999999999999 66665 344444
No 398
>PRK06924 short chain dehydrogenase; Provisional
Probab=88.34 E-value=3.1 Score=34.11 Aligned_cols=39 Identities=21% Similarity=0.191 Sum_probs=29.7
Q ss_pred CeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCCh-hHHHHH
Q 025712 180 TNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDV-QRLSIA 219 (249)
Q Consensus 180 ~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~-~~~~~~ 219 (249)
++++|.| +|++|...++-....|+ .|+++++++ ++.+.+
T Consensus 2 k~vlItGasggiG~~ia~~l~~~g~-~V~~~~r~~~~~~~~~ 42 (251)
T PRK06924 2 RYVIITGTSQGLGEAIANQLLEKGT-HVISISRTENKELTKL 42 (251)
T ss_pred cEEEEecCCchHHHHHHHHHHhcCC-EEEEEeCCchHHHHHH
Confidence 4789998 79999998888888899 788887765 343333
No 399
>PRK07791 short chain dehydrogenase; Provisional
Probab=88.29 E-value=4.4 Score=34.34 Aligned_cols=35 Identities=34% Similarity=0.501 Sum_probs=28.6
Q ss_pred CCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCC
Q 025712 177 GPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVD 212 (249)
Q Consensus 177 ~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~ 212 (249)
-.++++||.| ++++|.+.++.....|+ ++++++.+
T Consensus 4 l~~k~~lITGas~GIG~aia~~la~~G~-~vii~~~~ 39 (286)
T PRK07791 4 LDGRVVIVTGAGGGIGRAHALAFAAEGA-RVVVNDIG 39 (286)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEeeCC
Confidence 3578999998 79999998888888999 67777554
No 400
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=88.24 E-value=2.4 Score=33.26 Aligned_cols=54 Identities=11% Similarity=0.065 Sum_probs=38.7
Q ss_pred CCCCCeEEEEcCCh-HHHHHHHHHHHcCCCeEEEEeCChhH-HHHHHHcCCCEEecCCC
Q 025712 176 VGPETNVMIMGSGP-IGLVTLLAARAFGAPRIIITDVDVQR-LSIARNLGADETAKVST 232 (249)
Q Consensus 176 ~~~g~~vlI~G~g~-vG~~ai~la~~~G~~~vi~~~~~~~~-~~~~~~~ga~~vi~~~~ 232 (249)
--.+++++|.|+|. +|..++..++..|+ ++..+.++.+. .+.++ .++.+|....
T Consensus 41 ~l~gk~vlViG~G~~~G~~~a~~L~~~g~-~V~v~~r~~~~l~~~l~--~aDiVIsat~ 96 (168)
T cd01080 41 DLAGKKVVVVGRSNIVGKPLAALLLNRNA-TVTVCHSKTKNLKEHTK--QADIVIVAVG 96 (168)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHhhCCC-EEEEEECCchhHHHHHh--hCCEEEEcCC
Confidence 45799999999986 59988899988999 67777666433 33333 4676665544
No 401
>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=88.19 E-value=4 Score=37.05 Aligned_cols=34 Identities=21% Similarity=0.264 Sum_probs=29.1
Q ss_pred CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCC
Q 025712 178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVD 212 (249)
Q Consensus 178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~ 212 (249)
+++++||+| +|++|...++.+...|+ +++++++.
T Consensus 209 ~g~~vlItGasggIG~~la~~l~~~Ga-~vi~~~~~ 243 (450)
T PRK08261 209 AGKVALVTGAARGIGAAIAEVLARDGA-HVVCLDVP 243 (450)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 578999998 69999999999889999 78877663
No 402
>PRK13656 trans-2-enoyl-CoA reductase; Provisional
Probab=88.14 E-value=4.7 Score=36.10 Aligned_cols=32 Identities=25% Similarity=0.270 Sum_probs=24.0
Q ss_pred CCCCeEEEEc-CChHHHH--HHHHHHHcCCCeEEEEe
Q 025712 177 GPETNVMIMG-SGPIGLV--TLLAARAFGAPRIIITD 210 (249)
Q Consensus 177 ~~g~~vlI~G-~g~vG~~--ai~la~~~G~~~vi~~~ 210 (249)
..++++||+| ++++|++ ..+.+ ..|+ .++++.
T Consensus 39 ~ggK~aLVTGaSsGIGlA~~IA~al-~~GA-~Vi~v~ 73 (398)
T PRK13656 39 NGPKKVLVIGASSGYGLASRIAAAF-GAGA-DTLGVF 73 (398)
T ss_pred CCCCEEEEECCCchHhHHHHHHHHH-HcCC-eEEEEe
Confidence 4468899998 7899999 44555 7899 667775
No 403
>PRK07577 short chain dehydrogenase; Provisional
Probab=88.14 E-value=2.8 Score=33.90 Aligned_cols=37 Identities=22% Similarity=0.317 Sum_probs=29.8
Q ss_pred CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhH
Q 025712 178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQR 215 (249)
Q Consensus 178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~ 215 (249)
.+++++|.| +|++|...++.+...|. +|+++.++.++
T Consensus 2 ~~k~vlItG~s~~iG~~ia~~l~~~G~-~v~~~~r~~~~ 39 (234)
T PRK07577 2 SSRTVLVTGATKGIGLALSLRLANLGH-QVIGIARSAID 39 (234)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHCCC-EEEEEeCCccc
Confidence 367899998 79999998888888998 78888765443
No 404
>PRK06523 short chain dehydrogenase; Provisional
Probab=88.11 E-value=1.1 Score=37.02 Aligned_cols=35 Identities=23% Similarity=0.335 Sum_probs=29.2
Q ss_pred CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCCh
Q 025712 178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDV 213 (249)
Q Consensus 178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~ 213 (249)
+++++||.| +|++|...++.....|+ +|+++.++.
T Consensus 8 ~~k~vlItGas~gIG~~ia~~l~~~G~-~v~~~~r~~ 43 (260)
T PRK06523 8 AGKRALVTGGTKGIGAATVARLLEAGA-RVVTTARSR 43 (260)
T ss_pred CCCEEEEECCCCchhHHHHHHHHHCCC-EEEEEeCCh
Confidence 578999998 79999998888888899 688777654
No 405
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=88.06 E-value=4 Score=37.84 Aligned_cols=62 Identities=11% Similarity=0.164 Sum_probs=44.0
Q ss_pred EEE-cCChHHHHHHHHHHHcCCCeEEEEeC--ChhHHHHHHHcCCCEEecCCCCcccHHHHHHHHH
Q 025712 183 MIM-GSGPIGLVTLLAARAFGAPRIIITDV--DVQRLSIARNLGADETAKVSTDIEMWGRYKMQWV 245 (249)
Q Consensus 183 lI~-G~g~vG~~ai~la~~~G~~~vi~~~~--~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~ 245 (249)
+|. .+|.-|++....|+..|.+.+|.+.. +..|.+.++.+|++.+..-. ..+++.+...++.
T Consensus 68 VV~aSaGNha~~vA~aa~~~Gi~~~IvmP~~tp~~Kv~~~r~~GA~Vvl~g~-~~d~a~~~a~~la 132 (499)
T TIGR01124 68 VIAASAGNHAQGVAFSAARLGLKALIVMPETTPDIKVDAVRGFGGEVVLHGA-NFDDAKAKAIELS 132 (499)
T ss_pred EEEECCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEeCc-CHHHHHHHHHHHH
Confidence 454 58999999999999999977777743 46789999999997765422 2234444444443
No 406
>PLN00203 glutamyl-tRNA reductase
Probab=88.03 E-value=1.4 Score=40.97 Aligned_cols=43 Identities=16% Similarity=0.450 Sum_probs=37.4
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHH
Q 025712 179 ETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN 221 (249)
Q Consensus 179 g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~ 221 (249)
+.+|+|+|+|..|.+++..+...|+..++++.++.++.+.+.+
T Consensus 266 ~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~ 308 (519)
T PLN00203 266 SARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALRE 308 (519)
T ss_pred CCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHH
Confidence 7899999999999999999999998789999899888766543
No 407
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]
Probab=87.95 E-value=1.4 Score=38.29 Aligned_cols=45 Identities=24% Similarity=0.158 Sum_probs=37.2
Q ss_pred CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhH---HHHHHHcC
Q 025712 178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQR---LSIARNLG 223 (249)
Q Consensus 178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~---~~~~~~~g 223 (249)
.+.+|+|.| +|-+|.+.+.....+|+ +|.++.+++++ .+.+++|.
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~rGY-~V~gtVR~~~~~k~~~~L~~l~ 53 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSRGY-TVRGTVRDPEDEKKTEHLRKLE 53 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhCCC-EEEEEEcCcchhhhHHHHHhcc
Confidence 578999998 69999999999999999 79999887766 33566664
No 408
>PLN02477 glutamate dehydrogenase
Probab=87.85 E-value=2.1 Score=38.57 Aligned_cols=40 Identities=15% Similarity=0.153 Sum_probs=31.8
Q ss_pred HHHHHcCC-CCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEE
Q 025712 169 HACRRANV-GPETNVMIMGSGPIGLVTLLAARAFGAPRIIIT 209 (249)
Q Consensus 169 ~~l~~~~~-~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~ 209 (249)
.+++..+. -.|.+|+|.|.|.||+.+++++...|+ +|+++
T Consensus 195 ~~~~~~g~~l~g~~VaIqGfGnVG~~~A~~L~e~Ga-kVVaV 235 (410)
T PLN02477 195 ALLAEHGKSIAGQTFVIQGFGNVGSWAAQLIHEKGG-KIVAV 235 (410)
T ss_pred HHHHHcCCCccCCEEEEECCCHHHHHHHHHHHHcCC-EEEEE
Confidence 34444333 368999999999999999999999999 77755
No 409
>TIGR01747 diampropi_NH3ly diaminopropionate ammonia-lyase family. This small subfamily includes diaminopropionate ammonia-lyase from Salmonella typhimurium and a small number of close homologs, about 50 % identical in sequence. The enzyme is a pyridoxal phosphate-binding homodimer homologous to threonine dehydratase (threonine deaminase).
Probab=87.84 E-value=3.9 Score=36.46 Aligned_cols=64 Identities=22% Similarity=0.230 Sum_probs=44.9
Q ss_pred CeEEEEc-CChHHHHHHHHHHHcCCCeEEEEe--CChhHHHHHHHcCCCEEecCCCCcccHHHHHHHH
Q 025712 180 TNVMIMG-SGPIGLVTLLAARAFGAPRIIITD--VDVQRLSIARNLGADETAKVSTDIEMWGRYKMQW 244 (249)
Q Consensus 180 ~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~--~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~ 244 (249)
..-+|.+ +|..|+++...|+.+|++.+|.+. .++.|.+.++.+|++.++. ....+++.+..+++
T Consensus 94 ~~~vv~aSsGN~g~a~A~~Aa~~G~~~~I~vP~~~~~~k~~~i~~~GAeVi~v-~~~~~~a~~~a~~~ 160 (376)
T TIGR01747 94 QATFATATDGNHGRGVAWAAQQLGQKAVVYMPKGSAQERVENILNLGAECTIT-DMNYDDTVRLAMQM 160 (376)
T ss_pred CCEEEEECccHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEE-CCCHHHHHHHHHHH
Confidence 4445555 799999999999999997777774 3568899999999876653 32223444444443
No 410
>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=87.78 E-value=4.8 Score=34.34 Aligned_cols=49 Identities=29% Similarity=0.362 Sum_probs=34.2
Q ss_pred CCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH----HHcCCCE
Q 025712 177 GPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA----RNLGADE 226 (249)
Q Consensus 177 ~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~----~~~ga~~ 226 (249)
-.++.|+|.| ++++|.+.+.-.-..|+ .++.+.+..++++.+ ++.+..+
T Consensus 10 ~~~kvVvITGASsGIG~~lA~~la~~G~-~l~lvar~~rrl~~v~~~l~~~~~~~ 63 (282)
T KOG1205|consen 10 LAGKVVLITGASSGIGEALAYELAKRGA-KLVLVARRARRLERVAEELRKLGSLE 63 (282)
T ss_pred hCCCEEEEeCCCcHHHHHHHHHHHhCCC-ceEEeehhhhhHHHHHHHHHHhCCcC
Confidence 3678999999 68999887777777888 566665666655555 4555433
No 411
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=87.77 E-value=1.7 Score=39.19 Aligned_cols=39 Identities=21% Similarity=0.419 Sum_probs=31.9
Q ss_pred CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHH
Q 025712 178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLS 217 (249)
Q Consensus 178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~ 217 (249)
.+++++|.| +|++|.+.+......|+ +|+++++++++.+
T Consensus 177 ~gK~VLITGASgGIG~aLA~~La~~G~-~Vi~l~r~~~~l~ 216 (406)
T PRK07424 177 KGKTVAVTGASGTLGQALLKELHQQGA-KVVALTSNSDKIT 216 (406)
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHH
Confidence 478999998 79999998888888899 7888877766543
No 412
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=87.75 E-value=1.7 Score=36.16 Aligned_cols=38 Identities=21% Similarity=0.274 Sum_probs=29.4
Q ss_pred CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEe-CChhHH
Q 025712 178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITD-VDVQRL 216 (249)
Q Consensus 178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~-~~~~~~ 216 (249)
+++++||.| ++++|.+.+......|+ .|+.+. +++++.
T Consensus 7 ~~k~vlItGas~gIG~~ia~~l~~~G~-~v~~~~~~~~~~~ 46 (260)
T PRK08416 7 KGKTLVISGGTRGIGKAIVYEFAQSGV-NIAFTYNSNVEEA 46 (260)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHH
Confidence 578999998 69999999988888999 666663 344443
No 413
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=87.72 E-value=2 Score=38.93 Aligned_cols=43 Identities=21% Similarity=0.406 Sum_probs=36.7
Q ss_pred eEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHH-cCC
Q 025712 181 NVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN-LGA 224 (249)
Q Consensus 181 ~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~-~ga 224 (249)
+++|.|.|.+|...++.....|. .+++++.++++.+.+++ .|.
T Consensus 2 ~viIiG~G~ig~~~a~~L~~~g~-~v~vid~~~~~~~~~~~~~~~ 45 (453)
T PRK09496 2 KIIIVGAGQVGYTLAENLSGENN-DVTVIDTDEERLRRLQDRLDV 45 (453)
T ss_pred EEEEECCCHHHHHHHHHHHhCCC-cEEEEECCHHHHHHHHhhcCE
Confidence 68889999999999999999998 78899888888888765 543
No 414
>PLN02928 oxidoreductase family protein
Probab=87.68 E-value=1.2 Score=39.35 Aligned_cols=34 Identities=29% Similarity=0.505 Sum_probs=31.3
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCC
Q 025712 178 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVD 212 (249)
Q Consensus 178 ~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~ 212 (249)
.|+++.|+|.|.+|..+++.++.+|+ +|++.+++
T Consensus 158 ~gktvGIiG~G~IG~~vA~~l~afG~-~V~~~dr~ 191 (347)
T PLN02928 158 FGKTVFILGYGAIGIELAKRLRPFGV-KLLATRRS 191 (347)
T ss_pred CCCEEEEECCCHHHHHHHHHHhhCCC-EEEEECCC
Confidence 57899999999999999999999999 89998765
No 415
>PLN02356 phosphateglycerate kinase
Probab=87.68 E-value=3 Score=37.72 Aligned_cols=56 Identities=20% Similarity=0.244 Sum_probs=43.2
Q ss_pred cCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEe--CChhHHHHHHHcCCCEEec
Q 025712 174 ANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITD--VDVQRLSIARNLGADETAK 229 (249)
Q Consensus 174 ~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~--~~~~~~~~~~~~ga~~vi~ 229 (249)
...+++..|+-..+|..|++....|+.+|++.++.+. .+++|.+.++.+||+.+..
T Consensus 99 g~~~~~g~VveaSSGN~g~alA~~aa~~G~~~~ivvP~~~s~~K~~~ir~~GAeVi~v 156 (423)
T PLN02356 99 GQLFPGGVVTEGSAGSTAISLATVAPAYGCKCHVVIPDDVAIEKSQILEALGATVERV 156 (423)
T ss_pred CccCCCCEEEEeCCHHHHHHHHHHHHHcCCcEEEEECCCCcHHHHHHHHHcCCEEEEE
Confidence 3444666544346899999999999999997666664 3679999999999987653
No 416
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=87.66 E-value=2.2 Score=38.64 Aligned_cols=47 Identities=15% Similarity=0.237 Sum_probs=35.3
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCCh----hHHHHHHHcCCC
Q 025712 178 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDV----QRLSIARNLGAD 225 (249)
Q Consensus 178 ~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~----~~~~~~~~~ga~ 225 (249)
.+++++|+|.|+.|.++..++...|+ .|++.+.+. ...+.+++.|..
T Consensus 4 ~~k~v~v~G~g~~G~s~a~~l~~~G~-~V~~~d~~~~~~~~~~~~l~~~g~~ 54 (447)
T PRK02472 4 QNKKVLVLGLAKSGYAAAKLLHKLGA-NVTVNDGKPFSENPEAQELLEEGIK 54 (447)
T ss_pred CCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEEcCCCccchhHHHHHHhcCCE
Confidence 46889999988899999999999999 788887543 222445555543
No 417
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=87.63 E-value=1.9 Score=37.12 Aligned_cols=45 Identities=31% Similarity=0.401 Sum_probs=37.8
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCC-CeEEEEeCChhHHHHHHHcCC
Q 025712 180 TNVMIMGSGPIGLVTLLAARAFGA-PRIIITDVDVQRLSIARNLGA 224 (249)
Q Consensus 180 ~~vlI~G~g~vG~~ai~la~~~G~-~~vi~~~~~~~~~~~~~~~ga 224 (249)
.+|.|+|+|.+|......++..|. ..|++.++++++.+.+++.|+
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~ 52 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGL 52 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCC
Confidence 679999999999998888888884 368889999988888877775
No 418
>PRK08526 threonine dehydratase; Provisional
Probab=87.57 E-value=5.3 Score=36.00 Aligned_cols=62 Identities=18% Similarity=0.300 Sum_probs=43.8
Q ss_pred EEEc-CChHHHHHHHHHHHcCCCeEEEEeC--ChhHHHHHHHcCCCEEecCCCCcccHHHHHHHHH
Q 025712 183 MIMG-SGPIGLVTLLAARAFGAPRIIITDV--DVQRLSIARNLGADETAKVSTDIEMWGRYKMQWV 245 (249)
Q Consensus 183 lI~G-~g~vG~~ai~la~~~G~~~vi~~~~--~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~ 245 (249)
+|.+ +|.-|++....|+.+|.+.+|.+.. +..|.+.++.+||+.++.- .+..+..+..+++.
T Consensus 71 VV~aSaGNhg~avA~aa~~~Gi~~~IvmP~~~p~~k~~~~r~~GA~Vv~~g-~~~~~a~~~a~~~a 135 (403)
T PRK08526 71 VIAASAGNHAQGVAISAKKFGIKAVIVMPEATPLLKVSGTKALGAEVILKG-DNYDEAYAFALEYA 135 (403)
T ss_pred EEEECccHHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHhCCCEEEEEC-CCHHHHHHHHHHHH
Confidence 4555 7999999999999999987777744 4588889999999877642 22233434444433
No 419
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=87.55 E-value=3 Score=34.48 Aligned_cols=45 Identities=16% Similarity=0.227 Sum_probs=32.6
Q ss_pred CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCCh--hHHHHHHHcC
Q 025712 178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDV--QRLSIARNLG 223 (249)
Q Consensus 178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~--~~~~~~~~~g 223 (249)
.++++||.| +|++|.+.++.....|+ +|+.++..+ +..+.+++.+
T Consensus 9 ~~k~~lItG~~~gIG~a~a~~l~~~G~-~vv~~~~~~~~~~~~~~~~~~ 56 (253)
T PRK08993 9 EGKVAVVTGCDTGLGQGMALGLAEAGC-DIVGINIVEPTETIEQVTALG 56 (253)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEecCcchHHHHHHHHhcC
Confidence 478999998 79999999998888999 677775433 2233444444
No 420
>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....
Probab=87.52 E-value=4.6 Score=31.79 Aligned_cols=45 Identities=22% Similarity=0.237 Sum_probs=33.2
Q ss_pred eEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCCh-------hHHHHHHHcCCC
Q 025712 181 NVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDV-------QRLSIARNLGAD 225 (249)
Q Consensus 181 ~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~-------~~~~~~~~~ga~ 225 (249)
++||.| .|++|...++.....|..+++.+.++. +..+.+++.|..
T Consensus 2 tylitGG~gglg~~la~~La~~~~~~~il~~r~~~~~~~~~~~i~~l~~~g~~ 54 (181)
T PF08659_consen 2 TYLITGGLGGLGQSLARWLAERGARRLILLGRSGAPSAEAEAAIRELESAGAR 54 (181)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTT-SEEEEEESSGGGSTTHHHHHHHHHHTT-E
T ss_pred EEEEECCccHHHHHHHHHHHHcCCCEEEEeccCCCccHHHHHHHHHHHhCCCc
Confidence 578887 799999988888888888999998872 344555666764
No 421
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=87.49 E-value=1.9 Score=37.61 Aligned_cols=47 Identities=17% Similarity=0.239 Sum_probs=35.7
Q ss_pred CCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCC
Q 025712 177 GPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGA 224 (249)
Q Consensus 177 ~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga 224 (249)
=.|++|.|+|.|..|.+.++.++.+|. +|++..+.....+.+++.|+
T Consensus 14 LkgKtVGIIG~GsIG~amA~nL~d~G~-~ViV~~r~~~s~~~A~~~G~ 60 (335)
T PRK13403 14 LQGKTVAVIGYGSQGHAQAQNLRDSGV-EVVVGVRPGKSFEVAKADGF 60 (335)
T ss_pred hCcCEEEEEeEcHHHHHHHHHHHHCcC-EEEEEECcchhhHHHHHcCC
Confidence 468999999999999999999999999 67666454444444544444
No 422
>PRK07985 oxidoreductase; Provisional
Probab=87.48 E-value=3.7 Score=34.97 Aligned_cols=33 Identities=21% Similarity=0.358 Sum_probs=27.5
Q ss_pred CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeC
Q 025712 178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDV 211 (249)
Q Consensus 178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~ 211 (249)
.++++||.| +|++|.+.++.....|+ +|+.+.+
T Consensus 48 ~~k~vlITGas~gIG~aia~~L~~~G~-~Vi~~~~ 81 (294)
T PRK07985 48 KDRKALVTGGDSGIGRAAAIAYAREGA-DVAISYL 81 (294)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHCCC-EEEEecC
Confidence 568999998 79999998888888999 6777653
No 423
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=87.47 E-value=1.5 Score=37.69 Aligned_cols=38 Identities=24% Similarity=0.148 Sum_probs=29.9
Q ss_pred CCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhH
Q 025712 177 GPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQR 215 (249)
Q Consensus 177 ~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~ 215 (249)
..|+++||.| +|.+|...+......|. .|+++.++.++
T Consensus 3 ~~~~~vlVTGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~ 41 (322)
T PLN02986 3 GGGKLVCVTGASGYIASWIVKLLLLRGY-TVKATVRDLTD 41 (322)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECCCcc
Confidence 3578999998 79999998888888899 67766555543
No 424
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=87.46 E-value=0.76 Score=32.80 Aligned_cols=67 Identities=18% Similarity=0.239 Sum_probs=43.4
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhH---------HHHHHHc-CCCEEecCCCCcccHHHHHHHHHH
Q 025712 178 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQR---------LSIARNL-GADETAKVSTDIEMWGRYKMQWVQ 246 (249)
Q Consensus 178 ~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~---------~~~~~~~-ga~~vi~~~~~~~~~~~~~~~~~~ 246 (249)
.|++|||.|+|.+|..-++.....|+ .+.++....+. .++-..+ |++.++.. ++++.+.+.+.+..+
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~gA-~v~vis~~~~~~~~~i~~~~~~~~~~l~~~~lV~~a-t~d~~~n~~i~~~a~ 82 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEAGA-KVTVISPEIEFSEGLIQLIRREFEEDLDGADLVFAA-TDDPELNEAIYADAR 82 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCCTB-EEEEEESSEHHHHTSCEEEESS-GGGCTTESEEEE--SS-HHHHHHHHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEECCchhhhhhHHHHHhhhHHHHHhhheEEEec-CCCHHHHHHHHHHHh
Confidence 57899999999999999999999999 77777666310 0111122 45666543 334667777766654
No 425
>PRK08278 short chain dehydrogenase; Provisional
Probab=87.43 E-value=4.2 Score=34.08 Aligned_cols=36 Identities=33% Similarity=0.436 Sum_probs=29.6
Q ss_pred CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChh
Q 025712 178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQ 214 (249)
Q Consensus 178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~ 214 (249)
.+++++|.| +|++|...++.+...|+ .+++++++.+
T Consensus 5 ~~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~ 41 (273)
T PRK08278 5 SGKTLFITGASRGIGLAIALRAARDGA-NIVIAAKTAE 41 (273)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEecccc
Confidence 467899998 79999998888888899 7888876543
No 426
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=87.43 E-value=1.2 Score=38.63 Aligned_cols=34 Identities=29% Similarity=0.424 Sum_probs=31.3
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCC
Q 025712 178 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVD 212 (249)
Q Consensus 178 ~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~ 212 (249)
.|+++.|+|.|.+|...++.++.+|. +|++.+++
T Consensus 144 ~gktvGIiG~G~IG~~vA~~~~~fgm-~V~~~d~~ 177 (311)
T PRK08410 144 KGKKWGIIGLGTIGKRVAKIAQAFGA-KVVYYSTS 177 (311)
T ss_pred CCCEEEEECCCHHHHHHHHHHhhcCC-EEEEECCC
Confidence 68999999999999999999999999 89998764
No 427
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=87.32 E-value=2.6 Score=29.20 Aligned_cols=43 Identities=19% Similarity=0.352 Sum_probs=33.9
Q ss_pred eEEEEcCChHHHHHHHHHHHcC---CCeEE-EEeCChhHHHHH-HHcCC
Q 025712 181 NVMIMGSGPIGLVTLLAARAFG---APRII-ITDVDVQRLSIA-RNLGA 224 (249)
Q Consensus 181 ~vlI~G~g~vG~~ai~la~~~G---~~~vi-~~~~~~~~~~~~-~~~ga 224 (249)
++.|+|+|.+|.+.+.-....| . ++. ++++++++.+.+ +++++
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~-~v~~~~~r~~~~~~~~~~~~~~ 48 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPH-EVIIVSSRSPEKAAELAKEYGV 48 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GG-EEEEEEESSHHHHHHHHHHCTT
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCce-eEEeeccCcHHHHHHHHHhhcc
Confidence 5678899999999999888888 6 566 558899888777 44553
No 428
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=87.30 E-value=0.68 Score=35.01 Aligned_cols=32 Identities=22% Similarity=0.392 Sum_probs=26.0
Q ss_pred EEEEcCChHHHHHHHHHHHcCCCeEEEEeCChh
Q 025712 182 VMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQ 214 (249)
Q Consensus 182 vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~ 214 (249)
++|.|+|.++.+..++++.+|+ .|.+++..++
T Consensus 1 L~I~GaG~va~al~~la~~lg~-~v~v~d~r~e 32 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGF-RVTVVDPRPE 32 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTE-EEEEEES-CC
T ss_pred CEEEeCcHHHHHHHHHHHhCCC-EEEEEcCCcc
Confidence 4677999999999999999999 7888876655
No 429
>TIGR00260 thrC threonine synthase. Involved in threonine biosynthesis it catalyses the reaction O-PHOSPHO-L-HOMOSERINE + H(2)O = L-THREONINE + ORTHOPHOSPHATE using pyridoxal phosphate as a cofactor. the enzyme is distantly related to the serine/threonine dehydratases which are also pyridoxal-phosphate dependent enzymes. the pyridoxal-phosphate binding site is a Lys (K) residues present at residue 70 of the model.
Probab=87.26 E-value=4.6 Score=35.06 Aligned_cols=65 Identities=17% Similarity=0.197 Sum_probs=45.3
Q ss_pred CeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeC---ChhHHHHHHHcCCCEEecCCCCcccHHHHHHHHH
Q 025712 180 TNVMIMG-SGPIGLVTLLAARAFGAPRIIITDV---DVQRLSIARNLGADETAKVSTDIEMWGRYKMQWV 245 (249)
Q Consensus 180 ~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~---~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~ 245 (249)
...+|.+ +|..|.++...|+..|.+.++.+.. +.+|...++.+|++.+.. ..+.++..+.++++.
T Consensus 71 ~~~vv~aSsGN~g~a~A~~a~~~g~~~~v~~p~~~~s~~k~~~~~~~GA~Vi~~-~~~~~~~~~~~~~~~ 139 (328)
T TIGR00260 71 NDTVLCASTGNTGAAAAAYAGKAGVKVVILYPAGKISLGKLAQALGYNAEVVAI-DGNFDDAQRLVKQLF 139 (328)
T ss_pred CCEEEEeCCcHHHHHHHHHhccCCCcEEEEECCCCCCHHHHHHHHhcCcEEEEe-cCCHHHHHHHHHHHH
Confidence 4455555 7999999999999999977777753 467888899999987653 222334444444443
No 430
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=87.24 E-value=2.1 Score=34.86 Aligned_cols=39 Identities=23% Similarity=0.348 Sum_probs=30.3
Q ss_pred CCeEEEEc-CChHHHHHHHHHHHcCCCeEEEE-eCChhHHHH
Q 025712 179 ETNVMIMG-SGPIGLVTLLAARAFGAPRIIIT-DVDVQRLSI 218 (249)
Q Consensus 179 g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~-~~~~~~~~~ 218 (249)
++++||.| +|++|...+......|+ +++.+ +++.++.+.
T Consensus 5 ~~~ilI~Gasg~iG~~la~~l~~~g~-~v~~~~~r~~~~~~~ 45 (247)
T PRK05565 5 GKVAIVTGASGGIGRAIAELLAKEGA-KVVIAYDINEEAAQE 45 (247)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEcCCCHHHHHH
Confidence 57899998 79999998887777899 67777 777666543
No 431
>PRK06608 threonine dehydratase; Provisional
Probab=87.24 E-value=5.6 Score=34.89 Aligned_cols=48 Identities=17% Similarity=0.231 Sum_probs=39.2
Q ss_pred EEEE-cCChHHHHHHHHHHHcCCCeEEEEeC--ChhHHHHHHHcCCCEEec
Q 025712 182 VMIM-GSGPIGLVTLLAARAFGAPRIIITDV--DVQRLSIARNLGADETAK 229 (249)
Q Consensus 182 vlI~-G~g~vG~~ai~la~~~G~~~vi~~~~--~~~~~~~~~~~ga~~vi~ 229 (249)
-+|. .+|..|++....|+.+|.+.++.+.. +++|.+.++.+|++.+.-
T Consensus 74 ~vv~~SsGN~g~alA~~a~~~G~~~~vv~p~~~~~~k~~~l~~~GA~V~~~ 124 (338)
T PRK06608 74 KIVAYSTGNHGQAVAYASKLFGIKTRIYLPLNTSKVKQQAALYYGGEVILT 124 (338)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEE
Confidence 3445 47999999999999999977777754 678999999999987654
No 432
>PRK06849 hypothetical protein; Provisional
Probab=87.22 E-value=4.8 Score=35.83 Aligned_cols=67 Identities=21% Similarity=0.163 Sum_probs=42.8
Q ss_pred CCCeEEEEcC-ChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEec---CCCCcccHHHHHHHHHH
Q 025712 178 PETNVMIMGS-GPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAK---VSTDIEMWGRYKMQWVQ 246 (249)
Q Consensus 178 ~g~~vlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~---~~~~~~~~~~~~~~~~~ 246 (249)
..++|||+|+ ...|+..++.++..|. +|+++++++....... ..+++.+. ...+.+.+.+.+.++.+
T Consensus 3 ~~~~VLI~G~~~~~~l~iar~l~~~G~-~Vi~~d~~~~~~~~~s-~~~d~~~~~p~p~~d~~~~~~~L~~i~~ 73 (389)
T PRK06849 3 TKKTVLITGARAPAALELARLFHNAGH-TVILADSLKYPLSRFS-RAVDGFYTIPSPRWDPDAYIQALLSIVQ 73 (389)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCchHHHHHH-HhhhheEEeCCCCCCHHHHHHHHHHHHH
Confidence 4689999985 4689999999999999 8999987764433211 12233221 22334566677666544
No 433
>PLN02583 cinnamoyl-CoA reductase
Probab=87.21 E-value=1.9 Score=36.80 Aligned_cols=34 Identities=18% Similarity=0.195 Sum_probs=28.7
Q ss_pred CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCC
Q 025712 178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVD 212 (249)
Q Consensus 178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~ 212 (249)
+++++||+| +|.+|...+..+...|+ .|+++.++
T Consensus 5 ~~k~vlVTGatG~IG~~lv~~Ll~~G~-~V~~~~R~ 39 (297)
T PLN02583 5 SSKSVCVMDASGYVGFWLVKRLLSRGY-TVHAAVQK 39 (297)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCC-EEEEEEcC
Confidence 567899998 79999999999999999 78777664
No 434
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=87.13 E-value=2.2 Score=37.35 Aligned_cols=40 Identities=18% Similarity=0.091 Sum_probs=32.1
Q ss_pred CCCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHH
Q 025712 176 VGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRL 216 (249)
Q Consensus 176 ~~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~ 216 (249)
-..+.+|||+| +|.+|...++.....|. .|++++++.++.
T Consensus 7 ~~~~~~vLVtG~~GfIG~~l~~~L~~~G~-~V~~~~r~~~~~ 47 (353)
T PLN02896 7 ESATGTYCVTGATGYIGSWLVKLLLQRGY-TVHATLRDPAKS 47 (353)
T ss_pred ccCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCChHHH
Confidence 35678999998 79999999998888999 788776665543
No 435
>TIGR02991 ectoine_eutB ectoine utilization protein EutB. Members of this protein family are EutB, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. Members of this family resemble threonine dehydratases.
Probab=87.11 E-value=5.4 Score=34.62 Aligned_cols=61 Identities=16% Similarity=0.103 Sum_probs=42.4
Q ss_pred EEEc-CChHHHHHHHHHHHcCCCeEEEEeC--ChhHHHHHHHcCCCEEecCCCCcccHHHHHHHH
Q 025712 183 MIMG-SGPIGLVTLLAARAFGAPRIIITDV--DVQRLSIARNLGADETAKVSTDIEMWGRYKMQW 244 (249)
Q Consensus 183 lI~G-~g~vG~~ai~la~~~G~~~vi~~~~--~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~ 244 (249)
+|.. +|..|.+....|+.+|.+.++.+.. +++|.+.++.+|++.++--. ..+++.+..+++
T Consensus 70 vv~aSsGN~g~alA~~a~~~G~~~~v~~p~~~~~~k~~~~~~~GA~V~~~~~-~~~~~~~~a~~~ 133 (317)
T TIGR02991 70 VVAASTGNHGRALAYAAAEEGVRATICMSELVPQNKVDEIRRLGAEVRIVGR-SQDDAQEEVERL 133 (317)
T ss_pred EEEECCCHHHHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHcCCEEEEeCC-CHHHHHHHHHHH
Confidence 4444 7999999999999999966665543 56789999999998765332 223444444443
No 436
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=87.01 E-value=2.3 Score=34.51 Aligned_cols=34 Identities=18% Similarity=0.304 Sum_probs=29.0
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCC
Q 025712 178 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVD 212 (249)
Q Consensus 178 ~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~ 212 (249)
.|++|||.|+|.+|..-++.....|+ .|.+++..
T Consensus 8 ~gk~vlVvGgG~va~rk~~~Ll~~ga-~VtVvsp~ 41 (205)
T TIGR01470 8 EGRAVLVVGGGDVALRKARLLLKAGA-QLRVIAEE 41 (205)
T ss_pred CCCeEEEECcCHHHHHHHHHHHHCCC-EEEEEcCC
Confidence 47899999999999999999999999 67776543
No 437
>KOG1210 consensus Predicted 3-ketosphinganine reductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=86.97 E-value=2.9 Score=36.11 Aligned_cols=50 Identities=28% Similarity=0.404 Sum_probs=39.7
Q ss_pred cCCCCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHH-cCC
Q 025712 174 ANVGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN-LGA 224 (249)
Q Consensus 174 ~~~~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~-~ga 224 (249)
.+.++..+++|.| +.++|++...-|+..|+ .|-.+.++.+|+..+++ ++.
T Consensus 28 ~~~k~~~hi~itggS~glgl~la~e~~~~ga-~Vti~ar~~~kl~~a~~~l~l 79 (331)
T KOG1210|consen 28 VKPKPRRHILITGGSSGLGLALALECKREGA-DVTITARSGKKLLEAKAELEL 79 (331)
T ss_pred cccCccceEEEecCcchhhHHHHHHHHHccC-ceEEEeccHHHHHHHHhhhhh
Confidence 3456668899986 89999999999999999 57777788888777754 554
No 438
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=86.80 E-value=1.6 Score=36.48 Aligned_cols=39 Identities=21% Similarity=0.388 Sum_probs=33.4
Q ss_pred CCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChh
Q 025712 175 NVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQ 214 (249)
Q Consensus 175 ~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~ 214 (249)
...|-.+++|.|+|.++....++++.+|+ .|.++|..++
T Consensus 96 ~~~p~~~L~IfGaG~va~~la~la~~lGf-~V~v~D~R~~ 134 (246)
T TIGR02964 96 EAPPAPHVVLFGAGHVGRALVRALAPLPC-RVTWVDSREA 134 (246)
T ss_pred ccCCCCEEEEECCcHHHHHHHHHHhcCCC-EEEEEeCCcc
Confidence 35677899999999999999999999999 7888875544
No 439
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=86.79 E-value=3.2 Score=33.80 Aligned_cols=56 Identities=27% Similarity=0.436 Sum_probs=38.1
Q ss_pred HHHHHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCC-eEEEEeCChhHHHHHH----HcCCC
Q 025712 169 HACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAP-RIIITDVDVQRLSIAR----NLGAD 225 (249)
Q Consensus 169 ~~l~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~-~vi~~~~~~~~~~~~~----~~ga~ 225 (249)
.+++...+++|++||-+|+|. |+.+.-+++..|.. .|+.++..++-.+.++ ++|.+
T Consensus 63 ~~l~~L~l~pg~~VLeIGtGs-GY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~ 123 (209)
T PF01135_consen 63 RMLEALDLKPGDRVLEIGTGS-GYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGID 123 (209)
T ss_dssp HHHHHTTC-TT-EEEEES-TT-SHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTH
T ss_pred HHHHHHhcCCCCEEEEecCCC-cHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccC
Confidence 355777899999999998765 77777777777643 5889988876655553 44654
No 440
>PRK13243 glyoxylate reductase; Reviewed
Probab=86.68 E-value=2 Score=37.60 Aligned_cols=37 Identities=27% Similarity=0.379 Sum_probs=32.5
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhH
Q 025712 178 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQR 215 (249)
Q Consensus 178 ~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~ 215 (249)
.|+++.|+|.|.+|....+.++.+|+ +|++.+++...
T Consensus 149 ~gktvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~~~ 185 (333)
T PRK13243 149 YGKTIGIIGFGRIGQAVARRAKGFGM-RILYYSRTRKP 185 (333)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCCCCh
Confidence 57899999999999999999999999 78888876543
No 441
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=86.61 E-value=2.1 Score=35.41 Aligned_cols=39 Identities=21% Similarity=0.219 Sum_probs=31.6
Q ss_pred CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHH
Q 025712 178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLS 217 (249)
Q Consensus 178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~ 217 (249)
.++++||+| +|.+|...++.+...|. .|+++.++.++..
T Consensus 16 ~~~~ilItGasG~iG~~l~~~L~~~g~-~V~~~~R~~~~~~ 55 (251)
T PLN00141 16 KTKTVFVAGATGRTGKRIVEQLLAKGF-AVKAGVRDVDKAK 55 (251)
T ss_pred cCCeEEEECCCcHHHHHHHHHHHhCCC-EEEEEecCHHHHH
Confidence 467899998 69999999888888898 6887777766644
No 442
>PRK09414 glutamate dehydrogenase; Provisional
Probab=86.50 E-value=3 Score=37.99 Aligned_cols=53 Identities=15% Similarity=0.231 Sum_probs=37.3
Q ss_pred hhhccccchHHHHHHHHHcCC-CCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEE
Q 025712 156 EEGAMCEPLSVGVHACRRANV-GPETNVMIMGSGPIGLVTLLAARAFGAPRIIIT 209 (249)
Q Consensus 156 ~~aa~~~~~~~a~~~l~~~~~-~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~ 209 (249)
.++.....+.+.-.+++..+. -.|.+|.|.|.|.||+.+++++...|+ +|+++
T Consensus 208 ~~aTg~Gv~~~~~~~~~~~~~~l~g~rVaIqGfGnVG~~~A~~L~~~Ga-kVVav 261 (445)
T PRK09414 208 TEATGYGLVYFAEEMLKARGDSFEGKRVVVSGSGNVAIYAIEKAQQLGA-KVVTC 261 (445)
T ss_pred CCcccHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEE
Confidence 334333333333334444333 368999999999999999999999999 78877
No 443
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=86.42 E-value=2.4 Score=34.46 Aligned_cols=35 Identities=23% Similarity=0.252 Sum_probs=27.4
Q ss_pred CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCCh
Q 025712 178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDV 213 (249)
Q Consensus 178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~ 213 (249)
.++++||.| +|++|...+......|+ +|+++.++.
T Consensus 4 ~~~~vlItG~sg~iG~~l~~~l~~~G~-~v~~~~~~~ 39 (248)
T PRK05557 4 EGKVALVTGASRGIGRAIAERLAAQGA-NVVINYASS 39 (248)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCc
Confidence 457899998 79999999999888999 565554443
No 444
>PRK08197 threonine synthase; Validated
Probab=86.42 E-value=7.1 Score=34.97 Aligned_cols=65 Identities=15% Similarity=-0.009 Sum_probs=45.5
Q ss_pred CCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEe--CChhHHHHHHHcCCCEEecCCCCcccHHHHHHHH
Q 025712 179 ETNVMIMG-SGPIGLVTLLAARAFGAPRIIITD--VDVQRLSIARNLGADETAKVSTDIEMWGRYKMQW 244 (249)
Q Consensus 179 g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~--~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~ 244 (249)
|...+|.+ +|..|.+....|+..|.+.+|.+. .++.|.+.++.+||+.+.. ..+.+++.+.+++.
T Consensus 126 g~~~vv~aSsGN~g~alA~~aa~~G~~~~v~vp~~~~~~k~~~~~~~GA~Vi~v-~~~~~~~~~~a~~~ 193 (394)
T PRK08197 126 GVKHLAMPTNGNAGAAWAAYAARAGIRATIFMPADAPEITRLECALAGAELYLV-DGLISDAGKIVAEA 193 (394)
T ss_pred CCCEEEEeCCcHHHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEEE-CCCHHHHHHHHHHH
Confidence 33445555 799999999999999997777663 4668899999999986653 22234444444443
No 445
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=86.38 E-value=2.4 Score=36.17 Aligned_cols=38 Identities=24% Similarity=0.255 Sum_probs=32.9
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHH
Q 025712 180 TNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSI 218 (249)
Q Consensus 180 ~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~ 218 (249)
++|.|+|+|.+|...+..+...|. .|+..+.++++.+.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~-~V~l~d~~~~~l~~ 41 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGY-DVTIVDVSEEILKN 41 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCC-eEEEEeCCHHHHHH
Confidence 578999999999998888888899 79999999887764
No 446
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=86.37 E-value=2.4 Score=35.98 Aligned_cols=43 Identities=23% Similarity=0.194 Sum_probs=35.8
Q ss_pred eEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCC
Q 025712 181 NVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGA 224 (249)
Q Consensus 181 ~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga 224 (249)
+|.|+|.|.+|.......+..|. .|.+.++++++.+.+.+.|+
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~-~V~~~d~~~~~~~~a~~~g~ 44 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGH-TVYGVSRRESTCERAIERGL 44 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHCCC
Confidence 57889999999887777777888 79999999988888777664
No 447
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=86.34 E-value=2.4 Score=35.18 Aligned_cols=33 Identities=21% Similarity=0.205 Sum_probs=27.4
Q ss_pred CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeC
Q 025712 178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDV 211 (249)
Q Consensus 178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~ 211 (249)
+++++||.| +|++|...++.....|+ .++.+.+
T Consensus 6 ~~k~~lItGa~~gIG~~ia~~l~~~G~-~vvi~~~ 39 (261)
T PRK08936 6 EGKVVVITGGSTGLGRAMAVRFGKEKA-KVVINYR 39 (261)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeC
Confidence 578999998 79999999999889999 5666544
No 448
>PRK09135 pteridine reductase; Provisional
Probab=86.29 E-value=2.8 Score=34.18 Aligned_cols=34 Identities=24% Similarity=0.257 Sum_probs=28.2
Q ss_pred CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCC
Q 025712 178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVD 212 (249)
Q Consensus 178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~ 212 (249)
.++++||.| +|.+|...+......|+ .+++++++
T Consensus 5 ~~~~vlItGa~g~iG~~l~~~l~~~g~-~v~~~~r~ 39 (249)
T PRK09135 5 SAKVALITGGARRIGAAIARTLHAAGY-RVAIHYHR 39 (249)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEcCC
Confidence 457899998 79999998888888899 78887764
No 449
>TIGR01289 LPOR light-dependent protochlorophyllide reductase. This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.
Probab=86.26 E-value=2.5 Score=36.39 Aligned_cols=40 Identities=30% Similarity=0.360 Sum_probs=31.8
Q ss_pred CCeEEEEc-CChHHHHHHHHHHHcC-CCeEEEEeCChhHHHHH
Q 025712 179 ETNVMIMG-SGPIGLVTLLAARAFG-APRIIITDVDVQRLSIA 219 (249)
Q Consensus 179 g~~vlI~G-~g~vG~~ai~la~~~G-~~~vi~~~~~~~~~~~~ 219 (249)
+++++|.| ++++|.+.++.....| + +|+.+.+++++.+.+
T Consensus 3 ~k~vlITGas~GIG~aia~~L~~~G~~-~V~l~~r~~~~~~~~ 44 (314)
T TIGR01289 3 KPTVIITGASSGLGLYAAKALAATGEW-HVIMACRDFLKAEQA 44 (314)
T ss_pred CCEEEEECCCChHHHHHHHHHHHcCCC-EEEEEeCCHHHHHHH
Confidence 57899998 6899999888777889 7 788887777765544
No 450
>PLN02778 3,5-epimerase/4-reductase
Probab=86.18 E-value=3.3 Score=35.48 Aligned_cols=54 Identities=11% Similarity=0.073 Sum_probs=37.8
Q ss_pred CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHH----HHHHHcCCCEEecCCC
Q 025712 178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRL----SIARNLGADETAKVST 232 (249)
Q Consensus 178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~----~~~~~~ga~~vi~~~~ 232 (249)
...++||+| +|-+|...++.+...|. .|+......... ..+++.+.+.||+.-.
T Consensus 8 ~~~kiLVtG~tGfiG~~l~~~L~~~g~-~V~~~~~~~~~~~~v~~~l~~~~~D~ViH~Aa 66 (298)
T PLN02778 8 ATLKFLIYGKTGWIGGLLGKLCQEQGI-DFHYGSGRLENRASLEADIDAVKPTHVFNAAG 66 (298)
T ss_pred CCCeEEEECCCCHHHHHHHHHHHhCCC-EEEEecCccCCHHHHHHHHHhcCCCEEEECCc
Confidence 457899998 79999999999999998 565443322222 2334567899886554
No 451
>TIGR03528 2_3_DAP_am_ly diaminopropionate ammonia-lyase. Members of this protein family are the homodimeric, pyridoxal phosphate enzyme diaminopropionate ammonia-lyase, which adds water to remove two amino groups, leaving pyruvate.
Probab=86.09 E-value=5.5 Score=35.78 Aligned_cols=63 Identities=19% Similarity=0.181 Sum_probs=44.3
Q ss_pred EEEEc-CChHHHHHHHHHHHcCCCeEEEEeC--ChhHHHHHHHcCCCEEecCCCCcccHHHHHHHHH
Q 025712 182 VMIMG-SGPIGLVTLLAARAFGAPRIIITDV--DVQRLSIARNLGADETAKVSTDIEMWGRYKMQWV 245 (249)
Q Consensus 182 vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~--~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~ 245 (249)
.+|.+ +|..|++....|+.+|++.+|.+.. ++.|.+.++.+|++.++. ..+..+..+..+++.
T Consensus 115 ~vv~aSsGN~g~alA~~aa~~Gi~~~IvvP~~~~~~K~~~ir~~GAeVi~~-~~~~~~a~~~a~~~a 180 (396)
T TIGR03528 115 TFVTATDGNHGRGVAWAANQLGQKSVVYMPKGSAQIRLENIRAEGAECTIT-DLNYDDAVRLAWKMA 180 (396)
T ss_pred EEEEECccHHHHHHHHHHHHcCCCEEEEEeCCCcHHHHHHHHhcCCEEEEE-CCCHHHHHHHHHHHH
Confidence 45555 7999999999999999977777743 557899999999976553 332234444444443
No 452
>PRK06382 threonine dehydratase; Provisional
Probab=86.07 E-value=7.5 Score=35.01 Aligned_cols=48 Identities=19% Similarity=0.132 Sum_probs=38.6
Q ss_pred EEEEcCChHHHHHHHHHHHcCCCeEEEEeC--ChhHHHHHHHcCCCEEec
Q 025712 182 VMIMGSGPIGLVTLLAARAFGAPRIIITDV--DVQRLSIARNLGADETAK 229 (249)
Q Consensus 182 vlI~G~g~vG~~ai~la~~~G~~~vi~~~~--~~~~~~~~~~~ga~~vi~ 229 (249)
|+..++|..|++....|+.+|.+.+|.+.. +..|.+.++.+||+.++.
T Consensus 76 vv~aSsGN~g~a~A~aa~~~G~~~~ivmp~~~~~~k~~~~~~~GA~Vv~~ 125 (406)
T PRK06382 76 VITASAGNHAQGVAYAASINGIDAKIVMPEYTIPQKVNAVEAYGAHVILT 125 (406)
T ss_pred EEEECCCHHHHHHHHHHHHcCCCEEEEEcCCCHHHHHHHHHHcCCEEEEE
Confidence 433458999999999999999987777754 358899999999987654
No 453
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=86.07 E-value=1.6 Score=37.35 Aligned_cols=35 Identities=14% Similarity=0.212 Sum_probs=28.9
Q ss_pred eEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHH
Q 025712 181 NVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRL 216 (249)
Q Consensus 181 ~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~ 216 (249)
+++|.| +|.+|...++.....|. .|++++++.++.
T Consensus 2 ~vlItG~~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~ 37 (328)
T TIGR03466 2 KVLVTGATGFVGSAVVRLLLEQGE-EVRVLVRPTSDR 37 (328)
T ss_pred eEEEECCccchhHHHHHHHHHCCC-EEEEEEecCccc
Confidence 689998 69999999998888898 788887765543
No 454
>PRK07591 threonine synthase; Validated
Probab=86.05 E-value=7.1 Score=35.38 Aligned_cols=65 Identities=9% Similarity=0.069 Sum_probs=46.3
Q ss_pred eEEEEc-CChHHHHHHHHHHHcCCCeEEEEeC--ChhHHHHHHHcCCCEEecCCCCcccHHHHHHHHHH
Q 025712 181 NVMIMG-SGPIGLVTLLAARAFGAPRIIITDV--DVQRLSIARNLGADETAKVSTDIEMWGRYKMQWVQ 246 (249)
Q Consensus 181 ~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~--~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~~ 246 (249)
..+|.+ +|..|.++...|+.+|.+.+|.+.. +..|+..++.+||+.++. ..+.+++.+.++++.+
T Consensus 138 ~~vv~aSsGN~g~alA~~aa~~Gl~~~I~vP~~~~~~k~~~~~~~GA~Vi~v-~g~~d~a~~~a~~~~~ 205 (421)
T PRK07591 138 TTVACASTGNLANSVAAHAARAGLDSCVFIPADLEAGKIVGTLVYGPTLVAV-DGNYDDVNRLCSELAN 205 (421)
T ss_pred CEEEEeCCCHHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEE-CCCHHHHHHHHHHHHH
Confidence 344555 7999999999999999977777743 468899999999987653 2223455555555443
No 455
>PRK12746 short chain dehydrogenase; Provisional
Probab=86.03 E-value=2.3 Score=34.96 Aligned_cols=38 Identities=21% Similarity=0.186 Sum_probs=29.0
Q ss_pred CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEE-EeCChhHH
Q 025712 178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIII-TDVDVQRL 216 (249)
Q Consensus 178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~-~~~~~~~~ 216 (249)
.+++++|.| +|++|...++.....|+ ++++ ..++.++.
T Consensus 5 ~~~~ilItGasg~iG~~la~~l~~~G~-~v~i~~~r~~~~~ 44 (254)
T PRK12746 5 DGKVALVTGASRGIGRAIAMRLANDGA-LVAIHYGRNKQAA 44 (254)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHH
Confidence 367899998 79999999988888899 5655 35555544
No 456
>PRK06701 short chain dehydrogenase; Provisional
Probab=86.02 E-value=6.5 Score=33.40 Aligned_cols=37 Identities=24% Similarity=0.191 Sum_probs=29.3
Q ss_pred CCCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCCh
Q 025712 176 VGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDV 213 (249)
Q Consensus 176 ~~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~ 213 (249)
.-+++++||.| +|++|...+......|+ +|+.+.++.
T Consensus 43 ~~~~k~iLItGasggIG~~la~~l~~~G~-~V~l~~r~~ 80 (290)
T PRK06701 43 KLKGKVALITGGDSGIGRAVAVLFAKEGA-DIAIVYLDE 80 (290)
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCc
Confidence 34578999998 69999998888888899 677776653
No 457
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=85.96 E-value=1.6 Score=38.16 Aligned_cols=32 Identities=34% Similarity=0.460 Sum_probs=30.8
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeC
Q 025712 179 ETNVMIMGSGPIGLVTLLAARAFGAPRIIITDV 211 (249)
Q Consensus 179 g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~ 211 (249)
|+++-|+|.|.+|....+.++.+|+ +|++.+.
T Consensus 142 gkTvGIiG~G~IG~~va~~l~afgm-~v~~~d~ 173 (324)
T COG0111 142 GKTVGIIGLGRIGRAVAKRLKAFGM-KVIGYDP 173 (324)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCC-eEEEECC
Confidence 8899999999999999999999999 8999987
No 458
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=85.92 E-value=4.9 Score=32.87 Aligned_cols=36 Identities=33% Similarity=0.293 Sum_probs=26.7
Q ss_pred CeEEEEc-CChHHHHHHHHHHHcCCCeEEEE-eCChhHH
Q 025712 180 TNVMIMG-SGPIGLVTLLAARAFGAPRIIIT-DVDVQRL 216 (249)
Q Consensus 180 ~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~-~~~~~~~ 216 (249)
+++||.| +|++|...++.....|+ .++.+ .++.++.
T Consensus 3 k~ilItGas~giG~~la~~l~~~g~-~v~~~~~~~~~~~ 40 (248)
T PRK06947 3 KVVLITGASRGIGRATAVLAAARGW-SVGINYARDAAAA 40 (248)
T ss_pred cEEEEeCCCCcHHHHHHHHHHHCCC-EEEEEeCCCHHHH
Confidence 5789998 79999998888888899 55554 4454443
No 459
>PRK12937 short chain dehydrogenase; Provisional
Probab=85.91 E-value=2.4 Score=34.53 Aligned_cols=34 Identities=18% Similarity=0.139 Sum_probs=27.4
Q ss_pred CCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeC
Q 025712 177 GPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDV 211 (249)
Q Consensus 177 ~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~ 211 (249)
.++++++|+| +|++|...++.....|+ +++.+.+
T Consensus 3 ~~~~~vlItG~~~~iG~~la~~l~~~g~-~v~~~~~ 37 (245)
T PRK12937 3 LSNKVAIVTGASRGIGAAIARRLAADGF-AVAVNYA 37 (245)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEecC
Confidence 3578999998 79999999999888999 5655544
No 460
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=85.89 E-value=2.8 Score=32.31 Aligned_cols=41 Identities=12% Similarity=0.223 Sum_probs=36.0
Q ss_pred eEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHc
Q 025712 181 NVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNL 222 (249)
Q Consensus 181 ~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ 222 (249)
+|.|+|+|..|.+....+...|. .|....++++..+.+++.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~-~V~l~~~~~~~~~~i~~~ 41 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGH-EVTLWGRDEEQIEEINET 41 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTE-EEEEETSCHHHHHHHHHH
T ss_pred CEEEECcCHHHHHHHHHHHHcCC-EEEEEeccHHHHHHHHHh
Confidence 57899999999999999999997 899999998888888763
No 461
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=85.85 E-value=2.1 Score=31.97 Aligned_cols=34 Identities=26% Similarity=0.433 Sum_probs=29.0
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCC
Q 025712 179 ETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVD 212 (249)
Q Consensus 179 g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~ 212 (249)
..+|+|.|+|++|...+...-..|...+..+|..
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d 35 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDD 35 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESS
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCc
Confidence 4689999999999999998888899888888753
No 462
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=85.81 E-value=2.8 Score=34.42 Aligned_cols=36 Identities=14% Similarity=0.173 Sum_probs=29.4
Q ss_pred CeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHH
Q 025712 180 TNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRL 216 (249)
Q Consensus 180 ~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~ 216 (249)
++++|.| +|++|...++.+...|+ +++.+.++.++.
T Consensus 1 k~~lItG~sg~iG~~la~~l~~~G~-~v~~~~r~~~~~ 37 (254)
T TIGR02415 1 KVALVTGGAQGIGKGIAERLAKDGF-AVAVADLNEETA 37 (254)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHH
Confidence 4688998 79999998888888999 788887776554
No 463
>PRK06487 glycerate dehydrogenase; Provisional
Probab=85.75 E-value=1.6 Score=37.95 Aligned_cols=34 Identities=26% Similarity=0.489 Sum_probs=30.6
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCC
Q 025712 178 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVD 212 (249)
Q Consensus 178 ~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~ 212 (249)
.|+++.|+|.|.+|...++.++.+|+ +|++.++.
T Consensus 147 ~gktvgIiG~G~IG~~vA~~l~~fgm-~V~~~~~~ 180 (317)
T PRK06487 147 EGKTLGLLGHGELGGAVARLAEAFGM-RVLIGQLP 180 (317)
T ss_pred CCCEEEEECCCHHHHHHHHHHhhCCC-EEEEECCC
Confidence 57899999999999999999999999 78888754
No 464
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=85.67 E-value=2.9 Score=37.54 Aligned_cols=65 Identities=18% Similarity=0.260 Sum_probs=49.1
Q ss_pred ECCCCCChhhhccccchHHHHHHHHHcCCC-CCCeEEEEcCChHHHHHHHHHHHcCCC--eEEEEeCC
Q 025712 148 KLPDNVSLEEGAMCEPLSVGVHACRRANVG-PETNVMIMGSGPIGLVTLLAARAFGAP--RIIITDVD 212 (249)
Q Consensus 148 ~ip~~~~~~~aa~~~~~~~a~~~l~~~~~~-~g~~vlI~G~g~vG~~ai~la~~~G~~--~vi~~~~~ 212 (249)
.+|---+..++.++..++.-.++++..+-+ ...+|++.|+|+-|.+.+.+.+..|++ +++.+|+.
T Consensus 167 ~IPvFhDDqqGTaiv~lA~llnalk~~gk~l~d~kiv~~GAGAAgiaia~~l~~~g~~~~~i~~~D~~ 234 (432)
T COG0281 167 NIPVFHDDQQGTAIVTLAALLNALKLTGKKLKDQKIVINGAGAAGIAIADLLVAAGVKEENIFVVDRK 234 (432)
T ss_pred CCCcccccccHHHHHHHHHHHHHHHHhCCCccceEEEEeCCcHHHHHHHHHHHHhCCCcccEEEEecC
Confidence 455455667777666677777777664433 567777789999999999999999997 78888753
No 465
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=85.56 E-value=3.3 Score=37.31 Aligned_cols=48 Identities=25% Similarity=0.442 Sum_probs=40.6
Q ss_pred CCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHH-HHHcCC
Q 025712 177 GPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSI-ARNLGA 224 (249)
Q Consensus 177 ~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~-~~~~ga 224 (249)
-.++++||+|+|-.|..++.-....|...+.+..++.+|... ++++|+
T Consensus 176 L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~ 224 (414)
T COG0373 176 LKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGA 224 (414)
T ss_pred cccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCC
Confidence 378999999999999999999999998788888888888664 466883
No 466
>PRK13984 putative oxidoreductase; Provisional
Probab=85.54 E-value=3.2 Score=39.38 Aligned_cols=53 Identities=21% Similarity=0.342 Sum_probs=40.6
Q ss_pred CCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCCh---------------------hHHHHHHHcCCCEEec
Q 025712 176 VGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDV---------------------QRLSIARNLGADETAK 229 (249)
Q Consensus 176 ~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~---------------------~~~~~~~~~ga~~vi~ 229 (249)
.+.+++++|.|+|..|+.++..++..|. .|.+++..+ ...+.++++|++..++
T Consensus 280 ~~~~~~v~IIGaG~aGl~aA~~L~~~G~-~v~vie~~~~~gG~~~~~i~~~~~~~~~~~~~~~~~~~~gv~~~~~ 353 (604)
T PRK13984 280 EKKNKKVAIVGSGPAGLSAAYFLATMGY-EVTVYESLSKPGGVMRYGIPSYRLPDEALDKDIAFIEALGVKIHLN 353 (604)
T ss_pred ccCCCeEEEECCCHHHHHHHHHHHHCCC-eEEEEecCCCCCceEeecCCcccCCHHHHHHHHHHHHHCCcEEECC
Confidence 4678999999999999999999999999 566665432 2356677788766554
No 467
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=85.52 E-value=1.9 Score=35.52 Aligned_cols=46 Identities=28% Similarity=0.371 Sum_probs=39.1
Q ss_pred CCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHH
Q 025712 175 NVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN 221 (249)
Q Consensus 175 ~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~ 221 (249)
+..+-+.|.|.|+|..|.-..|++...|. .|..++.++..++.+++
T Consensus 7 ~~~~~~~V~ivGaG~MGSGIAQv~a~sg~-~V~l~d~~~~aL~~A~~ 52 (298)
T KOG2304|consen 7 NMAEIKNVAIVGAGQMGSGIAQVAATSGL-NVWLVDANEDALSRATK 52 (298)
T ss_pred ccccccceEEEcccccchhHHHHHHhcCC-ceEEecCCHHHHHHHHH
Confidence 44556788899999999999999999999 89999999988777643
No 468
>PRK05650 short chain dehydrogenase; Provisional
Probab=85.50 E-value=2.8 Score=34.99 Aligned_cols=37 Identities=27% Similarity=0.331 Sum_probs=29.7
Q ss_pred CeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHH
Q 025712 180 TNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLS 217 (249)
Q Consensus 180 ~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~ 217 (249)
++++|.| +|++|...+......|+ .|+.++++.++.+
T Consensus 1 ~~vlVtGasggIG~~la~~l~~~g~-~V~~~~r~~~~~~ 38 (270)
T PRK05650 1 NRVMITGAASGLGRAIALRWAREGW-RLALADVNEEGGE 38 (270)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHH
Confidence 3688997 79999998888888899 7888887776644
No 469
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=85.42 E-value=2.7 Score=35.85 Aligned_cols=40 Identities=18% Similarity=0.346 Sum_probs=33.5
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHH
Q 025712 180 TNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR 220 (249)
Q Consensus 180 ~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~ 220 (249)
++|.|+|+|.+|....+.+...|. .|++.+.++++.+.+.
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~-~V~~~d~~~~~~~~~~ 41 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGF-QTTLVDIKQEQLESAQ 41 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCC-cEEEEeCCHHHHHHHH
Confidence 468899999999888888888898 7889999988877653
No 470
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=85.37 E-value=7.5 Score=33.29 Aligned_cols=34 Identities=21% Similarity=0.440 Sum_probs=27.7
Q ss_pred CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCC
Q 025712 178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVD 212 (249)
Q Consensus 178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~ 212 (249)
.+++++|+| ++++|.+.++.....|+ +|+.++..
T Consensus 11 ~~k~~lVTGas~gIG~~ia~~L~~~Ga-~Vv~~~~~ 45 (306)
T PRK07792 11 SGKVAVVTGAAAGLGRAEALGLARLGA-TVVVNDVA 45 (306)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEecCC
Confidence 578899998 68999998888888899 67777653
No 471
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=85.37 E-value=2.1 Score=37.39 Aligned_cols=37 Identities=22% Similarity=0.228 Sum_probs=30.4
Q ss_pred CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhH
Q 025712 178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQR 215 (249)
Q Consensus 178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~ 215 (249)
.++++||.| +|.+|.+.++.....|. .|++++++...
T Consensus 3 ~~k~ilItGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~ 40 (349)
T TIGR02622 3 QGKKVLVTGHTGFKGSWLSLWLLELGA-EVYGYSLDPPT 40 (349)
T ss_pred CCCEEEEECCCChhHHHHHHHHHHCCC-EEEEEeCCCcc
Confidence 478999998 79999999999999998 78888765543
No 472
>PRK12483 threonine dehydratase; Reviewed
Probab=85.31 E-value=5 Score=37.45 Aligned_cols=62 Identities=15% Similarity=0.130 Sum_probs=44.1
Q ss_pred EEE-cCChHHHHHHHHHHHcCCCeEEEEeC--ChhHHHHHHHcCCCEEecCCCCcccHHHHHHHHH
Q 025712 183 MIM-GSGPIGLVTLLAARAFGAPRIIITDV--DVQRLSIARNLGADETAKVSTDIEMWGRYKMQWV 245 (249)
Q Consensus 183 lI~-G~g~vG~~ai~la~~~G~~~vi~~~~--~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~ 245 (249)
+|. .+|.-|++....|+.+|...+|.+.. +..|.+.++.+||+.++. .....+..+..+++.
T Consensus 88 VV~aSaGNha~gvA~aA~~lGi~~~IvmP~~tp~~Kv~~~r~~GAeVil~-g~~~d~a~~~A~~la 152 (521)
T PRK12483 88 VITASAGNHAQGVALAAARLGVKAVIVMPRTTPQLKVDGVRAHGGEVVLH-GESFPDALAHALKLA 152 (521)
T ss_pred EEEECCCHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEE-CCCHHHHHHHHHHHH
Confidence 454 58999999999999999977777743 567899999999976653 322234444444443
No 473
>KOG1481 consensus Cysteine synthase [Amino acid transport and metabolism]
Probab=85.26 E-value=2 Score=36.45 Aligned_cols=74 Identities=19% Similarity=0.209 Sum_probs=50.6
Q ss_pred HHcCCCCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEe--CChhHHHHHHHcCCCEEe-cCC--CCcccHHHHHHHHH
Q 025712 172 RRANVGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITD--VDVQRLSIARNLGADETA-KVS--TDIEMWGRYKMQWV 245 (249)
Q Consensus 172 ~~~~~~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~--~~~~~~~~~~~~ga~~vi-~~~--~~~~~~~~~~~~~~ 245 (249)
+...+.+|-+| +-| +|+.|.....+|++.|++..|.+. .+.+|.+.++.|||+.-- ..- .++..+..+.++.+
T Consensus 93 e~GkL~~gg~v-~EGtaGsTgIslA~v~~a~Gyk~~I~mPddqs~eK~~ile~LGA~V~rV~pa~i~dp~~yvn~Arr~a 171 (391)
T KOG1481|consen 93 EKGKLVRGGTV-VEGTAGSTGISLAHVARALGYKCHIYMPDDQSQEKSDILEFLGAEVHRVPPAPIVDPNHYVNQARRAA 171 (391)
T ss_pred HcCCcccCceE-EecCCCccchhHHHhhhhcCcceEEECCChHHHHHHHHHHHhcceeeecCCcCccChhHHHHHHHHHh
Confidence 44677888443 457 799999999999999997777774 356889999999985321 111 12346666666654
Q ss_pred H
Q 025712 246 Q 246 (249)
Q Consensus 246 ~ 246 (249)
.
T Consensus 172 n 172 (391)
T KOG1481|consen 172 N 172 (391)
T ss_pred h
Confidence 4
No 474
>cd06449 ACCD Aminocyclopropane-1-carboxylate deaminase (ACCD): Pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of 1-aminocyclopropane-L-carboxylate (ACC), a precursor of the plant hormone ethylene, to alpha-ketobutyrate and ammonia.
Probab=85.25 E-value=6.3 Score=33.93 Aligned_cols=52 Identities=15% Similarity=0.224 Sum_probs=39.2
Q ss_pred CCCeEEEE-c--CChHHHHHHHHHHHcCCCeEEEEeCCh----------hHHHHHHHcCCCEEec
Q 025712 178 PETNVMIM-G--SGPIGLVTLLAARAFGAPRIIITDVDV----------QRLSIARNLGADETAK 229 (249)
Q Consensus 178 ~g~~vlI~-G--~g~vG~~ai~la~~~G~~~vi~~~~~~----------~~~~~~~~~ga~~vi~ 229 (249)
.|.+.+|. | +|..|++....|+..|.+.++.+.... .|..+++.+|++.+..
T Consensus 50 ~g~~~vv~~ggs~GN~g~alA~~a~~~G~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~Ga~v~~~ 114 (307)
T cd06449 50 KGADTLVTVGGIQSNHTRQVAAVAAKLGLKCVLVQENWVPYSDAVYDRVGNILLSRIMGADVRLV 114 (307)
T ss_pred cCCCEEEECCCchhHHHHHHHHHHHHcCCeEEEEecCCCCcccccccccccHHHHHHCCCEEEEE
Confidence 34455555 3 578999999999999997777776442 4788999999986654
No 475
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=85.25 E-value=6.9 Score=32.51 Aligned_cols=34 Identities=18% Similarity=0.268 Sum_probs=27.1
Q ss_pred CCCeEEEEc-C--ChHHHHHHHHHHHcCCCeEEEEeCC
Q 025712 178 PETNVMIMG-S--GPIGLVTLLAARAFGAPRIIITDVD 212 (249)
Q Consensus 178 ~g~~vlI~G-~--g~vG~~ai~la~~~G~~~vi~~~~~ 212 (249)
.+++++|.| + +++|.+.++.....|+ +|+.+.++
T Consensus 6 ~~k~~lItGa~~s~GIG~aia~~la~~G~-~v~~~~r~ 42 (257)
T PRK08594 6 EGKTYVVMGVANKRSIAWGIARSLHNAGA-KLVFTYAG 42 (257)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHCCC-EEEEecCc
Confidence 478999998 4 6999998888888999 67777543
No 476
>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
Probab=85.25 E-value=2.6 Score=40.58 Aligned_cols=41 Identities=22% Similarity=0.375 Sum_probs=33.9
Q ss_pred CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712 178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA 219 (249)
Q Consensus 178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~ 219 (249)
.++++||.| +|++|.+.++.....|+ +|++++++.++.+.+
T Consensus 413 ~gkvvLVTGasggIG~aiA~~La~~Ga-~Vvi~~r~~~~~~~~ 454 (676)
T TIGR02632 413 ARRVAFVTGGAGGIGRETARRLAAEGA-HVVLADLNLEAAEAV 454 (676)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHH
Confidence 478999998 79999998888888899 788888887765544
No 477
>PRK07340 ornithine cyclodeaminase; Validated
Probab=85.25 E-value=5.4 Score=34.40 Aligned_cols=48 Identities=17% Similarity=0.245 Sum_probs=37.7
Q ss_pred HHcCCCCCCeEEEEcCChHHHHHHHHHHH-cCCCeEEEEeCChhHHHHH
Q 025712 172 RRANVGPETNVMIMGSGPIGLVTLLAARA-FGAPRIIITDVDVQRLSIA 219 (249)
Q Consensus 172 ~~~~~~~g~~vlI~G~g~vG~~ai~la~~-~G~~~vi~~~~~~~~~~~~ 219 (249)
+........+++|+|+|..|.+.++.... .+.+.+.+.+++.++.+.+
T Consensus 118 ~~La~~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~ 166 (304)
T PRK07340 118 RTLAPAPPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAF 166 (304)
T ss_pred HHhCCCCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHH
Confidence 44444567899999999999998888764 7887899999988876654
No 478
>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional
Probab=85.24 E-value=8.3 Score=32.07 Aligned_cols=32 Identities=22% Similarity=0.248 Sum_probs=25.6
Q ss_pred CCCeEEEEcC---ChHHHHHHHHHHHcCCCeEEEEe
Q 025712 178 PETNVMIMGS---GPIGLVTLLAARAFGAPRIIITD 210 (249)
Q Consensus 178 ~g~~vlI~G~---g~vG~~ai~la~~~G~~~vi~~~ 210 (249)
.++++||.|+ +++|.+..+.....|+ +++.+.
T Consensus 5 ~~k~vlItGas~~~GIG~a~a~~l~~~G~-~v~~~~ 39 (260)
T PRK06997 5 AGKRILITGLLSNRSIAYGIAKACKREGA-ELAFTY 39 (260)
T ss_pred CCcEEEEeCCCCCCcHHHHHHHHHHHCCC-eEEEEc
Confidence 4789999983 5899998888888999 677664
No 479
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=85.21 E-value=3 Score=35.52 Aligned_cols=40 Identities=25% Similarity=0.395 Sum_probs=32.9
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHH
Q 025712 180 TNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR 220 (249)
Q Consensus 180 ~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~ 220 (249)
++|.|+|+|.+|....+.+...|. .|...+.++++.+.++
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~-~V~l~d~~~~~l~~~~ 43 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGF-DVTIYDISDEALEKAK 43 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHH
Confidence 578999999999888888888898 7999998887665543
No 480
>PRK07370 enoyl-(acyl carrier protein) reductase; Validated
Probab=85.16 E-value=5.9 Score=32.92 Aligned_cols=32 Identities=22% Similarity=0.185 Sum_probs=25.7
Q ss_pred CCCeEEEEcC---ChHHHHHHHHHHHcCCCeEEEEe
Q 025712 178 PETNVMIMGS---GPIGLVTLLAARAFGAPRIIITD 210 (249)
Q Consensus 178 ~g~~vlI~G~---g~vG~~ai~la~~~G~~~vi~~~ 210 (249)
.+++++|.|+ +++|.+.+......|+ +|+.+.
T Consensus 5 ~~k~~lItGas~~~GIG~aia~~la~~G~-~v~~~~ 39 (258)
T PRK07370 5 TGKKALVTGIANNRSIAWGIAQQLHAAGA-ELGITY 39 (258)
T ss_pred CCcEEEEeCCCCCCchHHHHHHHHHHCCC-EEEEEe
Confidence 4789999984 5999998888888999 666653
No 481
>PRK06932 glycerate dehydrogenase; Provisional
Probab=85.14 E-value=1.7 Score=37.65 Aligned_cols=34 Identities=18% Similarity=0.352 Sum_probs=30.5
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCC
Q 025712 178 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVD 212 (249)
Q Consensus 178 ~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~ 212 (249)
.|+++.|+|.|.+|....+.++.+|+ +|++.+..
T Consensus 146 ~gktvgIiG~G~IG~~va~~l~~fg~-~V~~~~~~ 179 (314)
T PRK06932 146 RGSTLGVFGKGCLGTEVGRLAQALGM-KVLYAEHK 179 (314)
T ss_pred CCCEEEEECCCHHHHHHHHHHhcCCC-EEEEECCC
Confidence 47899999999999999999999999 78888654
No 482
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=85.11 E-value=3.7 Score=31.79 Aligned_cols=45 Identities=16% Similarity=0.253 Sum_probs=36.8
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCC
Q 025712 180 TNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGAD 225 (249)
Q Consensus 180 ~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~ 225 (249)
.+|-++|.|..|.....-....|+ .+.+.++++++.+.+.+.|+.
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~-~v~~~d~~~~~~~~~~~~g~~ 46 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGY-EVTVYDRSPEKAEALAEAGAE 46 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTT-EEEEEESSHHHHHHHHHTTEE
T ss_pred CEEEEEchHHHHHHHHHHHHhcCC-eEEeeccchhhhhhhHHhhhh
Confidence 367888999999998888888999 899999999999988877743
No 483
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=85.04 E-value=2.7 Score=40.32 Aligned_cols=35 Identities=29% Similarity=0.449 Sum_probs=29.9
Q ss_pred CCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCC
Q 025712 177 GPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVD 212 (249)
Q Consensus 177 ~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~ 212 (249)
+.+++|+|+|+|..|+.+...+...|. .|.+++.+
T Consensus 191 ~~~k~VaIIGaGpAGl~aA~~La~~G~-~Vtv~e~~ 225 (652)
T PRK12814 191 KSGKKVAIIGAGPAGLTAAYYLLRKGH-DVTIFDAN 225 (652)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-cEEEEecC
Confidence 457899999999999999999999999 57777654
No 484
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=84.99 E-value=2.8 Score=28.11 Aligned_cols=31 Identities=23% Similarity=0.453 Sum_probs=26.0
Q ss_pred eEEEEcCChHHHHHHHHHHHcCCCeEEEEeCC
Q 025712 181 NVMIMGSGPIGLVTLLAARAFGAPRIIITDVD 212 (249)
Q Consensus 181 ~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~ 212 (249)
+++|+|+|.+|.-.....+.+|. .+..+..+
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~-~vtli~~~ 31 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGK-EVTLIERS 31 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTS-EEEEEESS
T ss_pred CEEEECcCHHHHHHHHHHHHhCc-EEEEEecc
Confidence 57899999999999999999998 66666554
No 485
>PRK06141 ornithine cyclodeaminase; Validated
Probab=84.96 E-value=6.5 Score=34.05 Aligned_cols=49 Identities=10% Similarity=0.129 Sum_probs=36.8
Q ss_pred HHcCCCCCCeEEEEcCChHHHHHHHHHH-HcCCCeEEEEeCChhHHHHHH
Q 025712 172 RRANVGPETNVMIMGSGPIGLVTLLAAR-AFGAPRIIITDVDVQRLSIAR 220 (249)
Q Consensus 172 ~~~~~~~g~~vlI~G~g~vG~~ai~la~-~~G~~~vi~~~~~~~~~~~~~ 220 (249)
+.......++++|+|+|..|.+.+.... ..+..++.+..++.++.+.+.
T Consensus 118 ~~La~~~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a 167 (314)
T PRK06141 118 SYLARKDASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALA 167 (314)
T ss_pred HHhCCCCCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHH
Confidence 3344467889999999999999876444 477778999999888866553
No 486
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=84.96 E-value=2.1 Score=34.54 Aligned_cols=35 Identities=31% Similarity=0.499 Sum_probs=31.1
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCC
Q 025712 178 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVD 212 (249)
Q Consensus 178 ~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~ 212 (249)
.+.+|+|.|.|++|..+++.+...|..++..+|.+
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 46889999999999999999999999888888765
No 487
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=84.96 E-value=3.3 Score=28.31 Aligned_cols=35 Identities=17% Similarity=0.317 Sum_probs=29.0
Q ss_pred CCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeC
Q 025712 177 GPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDV 211 (249)
Q Consensus 177 ~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~ 211 (249)
-.+++++|.|.|.+|..+.+.+...+..++...++
T Consensus 21 ~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 21 LKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 45789999999999999999999986657777754
No 488
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=84.94 E-value=2.6 Score=35.94 Aligned_cols=42 Identities=17% Similarity=0.185 Sum_probs=33.1
Q ss_pred eEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCC
Q 025712 181 NVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGA 224 (249)
Q Consensus 181 ~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga 224 (249)
+|+|+|+|.+|.+....+...|. .|..+++ +++.+.+++.|.
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~-~V~~~~r-~~~~~~~~~~g~ 43 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGR-DVTFLVR-PKRAKALRERGL 43 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCC-ceEEEec-HHHHHHHHhCCe
Confidence 58899999999987777777788 6777777 777787777664
No 489
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=84.94 E-value=3.2 Score=37.89 Aligned_cols=48 Identities=17% Similarity=0.235 Sum_probs=36.6
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChh-----HHHHHHHcCCCE
Q 025712 178 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQ-----RLSIARNLGADE 226 (249)
Q Consensus 178 ~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~-----~~~~~~~~ga~~ 226 (249)
.+++|+|+|.|..|.++.++++..|+ .|.+.|.++. ..+.+++.|+..
T Consensus 13 ~~~~i~v~G~G~sG~a~a~~L~~~G~-~V~~~D~~~~~~~~~~~~~l~~~gi~~ 65 (458)
T PRK01710 13 KNKKVAVVGIGVSNIPLIKFLVKLGA-KVTAFDKKSEEELGEVSNELKELGVKL 65 (458)
T ss_pred cCCeEEEEcccHHHHHHHHHHHHCCC-EEEEECCCCCccchHHHHHHHhCCCEE
Confidence 36899999999999999999999999 7888886542 123455556533
No 490
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=84.89 E-value=2.8 Score=36.39 Aligned_cols=47 Identities=23% Similarity=0.178 Sum_probs=34.8
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCC
Q 025712 178 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGA 224 (249)
Q Consensus 178 ~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga 224 (249)
.+++|.|+|.|..|.+.++-++..|.+.++....+.++.+.+.+.|+
T Consensus 2 ~~kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a~~~Gv 48 (314)
T TIGR00465 2 KGKTVAIIGYGSQGHAQALNLRDSGLNVIVGLRKGGASWKKATEDGF 48 (314)
T ss_pred CcCEEEEEeEcHHHHHHHHHHHHCCCeEEEEECcChhhHHHHHHCCC
Confidence 47889999999999999999999998433345544455565556555
No 491
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=84.85 E-value=2 Score=39.33 Aligned_cols=36 Identities=14% Similarity=0.190 Sum_probs=30.6
Q ss_pred CCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCCh
Q 025712 176 VGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDV 213 (249)
Q Consensus 176 ~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~ 213 (249)
-..+++|+|+|.|..|.+++++++. |+ .+++.|...
T Consensus 3 ~~~~~~v~v~G~G~sG~a~~~~L~~-g~-~v~v~D~~~ 38 (454)
T PRK01368 3 SHTKQKIGVFGLGKTGISVYEELQN-KY-DVIVYDDLK 38 (454)
T ss_pred CCCCCEEEEEeecHHHHHHHHHHhC-CC-EEEEECCCC
Confidence 3568899999999999999999994 99 788888543
No 492
>PRK08206 diaminopropionate ammonia-lyase; Provisional
Probab=84.84 E-value=7.3 Score=35.03 Aligned_cols=47 Identities=23% Similarity=0.305 Sum_probs=37.6
Q ss_pred EEEc-CChHHHHHHHHHHHcCCCeEEEEe--CChhHHHHHHHcCCCEEec
Q 025712 183 MIMG-SGPIGLVTLLAARAFGAPRIIITD--VDVQRLSIARNLGADETAK 229 (249)
Q Consensus 183 lI~G-~g~vG~~ai~la~~~G~~~vi~~~--~~~~~~~~~~~~ga~~vi~ 229 (249)
+|.+ +|..|++....|+..|.+.+|.+. .++.|.+.++.+|++.+.-
T Consensus 119 vv~aSsGN~g~alA~~a~~~G~~~~Ivvp~~~~~~k~~~i~~~GA~Vi~v 168 (399)
T PRK08206 119 FATATDGNHGRGVAWAAQQLGQKAVIYMPKGSSEERVDAIRALGAECIIT 168 (399)
T ss_pred EEEeCCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEe
Confidence 3444 799999999999999997777774 3568899999999986553
No 493
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=84.81 E-value=3.2 Score=33.70 Aligned_cols=35 Identities=17% Similarity=0.256 Sum_probs=26.8
Q ss_pred CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEE-EeCCh
Q 025712 178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIII-TDVDV 213 (249)
Q Consensus 178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~-~~~~~ 213 (249)
+.+++||.| +|.+|...+..+...|+ .+++ +.++.
T Consensus 5 ~~~~vlItGasg~iG~~l~~~l~~~g~-~v~~~~~~~~ 41 (249)
T PRK12825 5 MGRVALVTGAARGLGRAIALRLARAGA-DVVVHYRSDE 41 (249)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCCH
Confidence 357899998 79999999998888999 4555 44333
No 494
>PF00291 PALP: Pyridoxal-phosphate dependent enzyme; InterPro: IPR001926 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. Pyridoxal-5'-phosphate-dependent enzymes (B6 enzymes) catalyze manifold reactions in the metabolism of amino acids. Most of these enzymes can be assigned to one of three different families of homologous proteins, the alpha, beta and gamma families. The alpha and gamma family might be distantly related with one another, but are clearly not homologous with the beta family. The beta family includes L- and D-serine dehydratase, threonine dehydratase, the beta subunit of tryptophan synthase, threonine synthase and cysteine synthase. These enzymes catalyze beta-replacement or beta-elimination reactions []. Comparison of sequences from eukaryotic, archebacterial, and eubacterial species indicates that the functional specialization of most B6 enzymes has occurred already in the universal ancestor cell. The cofactor pyridoxal-5-phosphate must have emerged very early in biological evolution; conceivably, organic cofactors and metal ions were the first biological catalysts []. The 3D structure of the beta-subunit of tryptophan synthase has been solved. The subunit has two domains that are approximately the same size and similar to each other in folding pattern. Each has a core containing a four-stranded parallel beta-sheet with three helices on its inner side and one on the outer side. The cofactor is bound at the interface between the domains [].; GO: 0003824 catalytic activity, 0030170 pyridoxal phosphate binding, 0008152 metabolic process; PDB: 1P5J_A 2D1F_B 3AEY_B 3AEX_B 3IAU_A 2Q3B_A 2Q3D_A 2Q3C_A 1TZJ_A 1RQX_D ....
Probab=84.78 E-value=4.8 Score=34.28 Aligned_cols=54 Identities=24% Similarity=0.223 Sum_probs=39.9
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeC--ChhHHHHHHHcCCCEEecCC
Q 025712 178 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDV--DVQRLSIARNLGADETAKVS 231 (249)
Q Consensus 178 ~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~--~~~~~~~~~~~ga~~vi~~~ 231 (249)
..+.|+...+|..|.++...|+.+|.+.++.+.. ++.+...++.+|++.+....
T Consensus 55 ~~~~vv~assGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~ 110 (306)
T PF00291_consen 55 GGRTVVGASSGNHGRALAYAAARLGLKCTIVVPEDVSPEKLKQMRALGAEVILVPG 110 (306)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHHTCEEEEEEETTSHHHHHHHHHHTTCEEEEESS
T ss_pred ccceeeeeccCCceehhhhhhhhccccceeeeccccccccccceeeecceEEEccc
Confidence 4455633348999999999999999966666644 35788889999997764433
No 495
>PRK08328 hypothetical protein; Provisional
Probab=84.74 E-value=2.1 Score=35.39 Aligned_cols=35 Identities=26% Similarity=0.410 Sum_probs=30.4
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCC
Q 025712 178 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVD 212 (249)
Q Consensus 178 ~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~ 212 (249)
.+.+|+|.|+|++|..++...-..|..++..+|..
T Consensus 26 ~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D 60 (231)
T PRK08328 26 KKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQ 60 (231)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 45789999999999999999999999888888743
No 496
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=84.72 E-value=2.5 Score=36.30 Aligned_cols=40 Identities=25% Similarity=0.440 Sum_probs=32.3
Q ss_pred EEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHH
Q 025712 182 VMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN 221 (249)
Q Consensus 182 vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~ 221 (249)
|||+| +|++|...++-....+...++.++.++.++-.+++
T Consensus 1 VLVTGa~GSIGseL~rql~~~~p~~lil~d~~E~~l~~l~~ 41 (293)
T PF02719_consen 1 VLVTGAGGSIGSELVRQLLRYGPKKLILFDRDENKLYELER 41 (293)
T ss_dssp EEEETTTSHHHHHHHHHHHCCB-SEEEEEES-HHHHHHHHH
T ss_pred CEEEccccHHHHHHHHHHHhcCCCeEEEeCCChhHHHHHHH
Confidence 68997 79999988888888888799999999988877753
No 497
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=84.69 E-value=2.2 Score=35.55 Aligned_cols=34 Identities=26% Similarity=0.420 Sum_probs=29.8
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCC
Q 025712 179 ETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVD 212 (249)
Q Consensus 179 g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~ 212 (249)
+.+|+|.|+|++|..+++.....|..++..+|..
T Consensus 24 ~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D 57 (240)
T TIGR02355 24 ASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFD 57 (240)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 4789999999999999999999999888888653
No 498
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=84.67 E-value=3.2 Score=38.25 Aligned_cols=41 Identities=17% Similarity=0.208 Sum_probs=34.8
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712 178 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA 219 (249)
Q Consensus 178 ~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~ 219 (249)
.+++++|+|+|++|.+++......|+ .++..+++.++.+.+
T Consensus 331 ~~k~vlIiGaGgiG~aia~~L~~~G~-~V~i~~R~~~~~~~l 371 (477)
T PRK09310 331 NNQHVAIVGAGGAAKAIATTLARAGA-ELLIFNRTKAHAEAL 371 (477)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence 57889999999999999999999999 788888887776554
No 499
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=84.67 E-value=4 Score=33.69 Aligned_cols=33 Identities=21% Similarity=0.268 Sum_probs=28.7
Q ss_pred CCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEe
Q 025712 177 GPETNVMIMGSGPIGLVTLLAARAFGAPRIIITD 210 (249)
Q Consensus 177 ~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~ 210 (249)
-.+.+++|.|.|.||+.+++++...|+ +++++.
T Consensus 29 l~~~~v~I~G~G~VG~~~a~~L~~~g~-~vv~v~ 61 (227)
T cd01076 29 LAGARVAIQGFGNVGSHAARFLHEAGA-KVVAVS 61 (227)
T ss_pred ccCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEE
Confidence 357999999999999999999999999 777553
No 500
>PRK12747 short chain dehydrogenase; Provisional
Probab=84.66 E-value=3.1 Score=34.28 Aligned_cols=37 Identities=19% Similarity=0.123 Sum_probs=28.7
Q ss_pred CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEe-CChhH
Q 025712 178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITD-VDVQR 215 (249)
Q Consensus 178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~-~~~~~ 215 (249)
.+++++|+| +|++|.+.++.....|+ +++.+. +..++
T Consensus 3 ~~k~~lItGas~gIG~~ia~~l~~~G~-~v~~~~~~~~~~ 41 (252)
T PRK12747 3 KGKVALVTGASRGIGRAIAKRLANDGA-LVAIHYGNRKEE 41 (252)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC-eEEEEcCCCHHH
Confidence 478999998 79999999998888999 566653 44443
Done!