Query 025713
Match_columns 249
No_of_seqs 124 out of 449
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 08:44:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025713.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025713hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5040 BMH1 14-3-3 family pro 100.0 3E-91 6.5E-96 592.9 16.3 228 1-228 1-237 (268)
2 smart00101 14_3_3 14-3-3 homol 100.0 4E-87 8.6E-92 593.4 21.2 229 5-233 1-240 (244)
3 PF00244 14-3-3: 14-3-3 protei 100.0 1.8E-82 3.9E-87 562.4 19.8 226 5-230 1-235 (236)
4 KOG0841 Multifunctional chaper 100.0 9.3E-79 2E-83 529.7 19.7 231 4-234 1-241 (247)
5 PF13424 TPR_12: Tetratricopep 96.2 0.011 2.4E-07 42.3 5.0 54 138-193 22-75 (78)
6 PF12862 Apc5: Anaphase-promot 90.6 1.8 3.9E-05 32.6 7.6 73 120-198 2-75 (94)
7 PF13414 TPR_11: TPR repeat; P 82.4 6.5 0.00014 26.8 6.2 46 138-192 20-66 (69)
8 PF13374 TPR_10: Tetratricopep 80.0 1.8 3.9E-05 26.4 2.4 23 138-160 19-41 (42)
9 PF04781 DUF627: Protein of un 74.7 5.2 0.00011 31.9 4.1 41 111-151 33-74 (111)
10 KOG1840 Kinesin light chain [C 70.9 26 0.00056 34.9 8.9 178 7-199 201-402 (508)
11 KOG1840 Kinesin light chain [C 69.7 13 0.00028 37.0 6.5 54 138-192 258-311 (508)
12 PF13424 TPR_12: Tetratricopep 64.4 12 0.00027 26.1 4.0 38 159-198 1-38 (78)
13 PF01765 RRF: Ribosome recycli 60.7 43 0.00092 28.0 7.2 73 26-99 84-156 (165)
14 PF13431 TPR_17: Tetratricopep 59.9 9.4 0.0002 23.3 2.3 34 143-185 1-34 (34)
15 CHL00033 ycf3 photosystem I as 58.4 88 0.0019 25.3 8.6 69 138-215 89-163 (168)
16 COG0233 Frr Ribosome recycling 57.8 44 0.00096 29.0 6.8 74 26-100 104-177 (187)
17 KOG4759 Ribosome recycling fac 57.7 55 0.0012 29.8 7.7 90 8-100 154-253 (263)
18 PF13371 TPR_9: Tetratricopept 57.5 48 0.001 22.5 6.0 45 138-191 12-56 (73)
19 PF05010 TACC: Transforming ac 55.2 21 0.00046 31.3 4.6 78 10-97 123-206 (207)
20 PF14559 TPR_19: Tetratricopep 54.4 39 0.00085 22.6 5.0 44 138-190 8-51 (68)
21 PRK15363 pathogenicity island 52.7 94 0.002 26.1 7.9 71 135-218 83-155 (157)
22 PF08424 NRDE-2: NRDE-2, neces 51.8 1.2E+02 0.0026 27.9 9.2 91 137-234 118-218 (321)
23 KOG4162 Predicted calmodulin-b 50.7 1.1E+02 0.0025 31.9 9.4 104 114-226 436-580 (799)
24 PRK14720 transcript cleavage f 50.5 17 0.00037 38.7 3.7 87 94-195 88-180 (906)
25 cd00520 RRF Ribosome recycling 50.4 58 0.0012 27.7 6.4 72 27-99 99-170 (179)
26 TIGR00496 frr ribosome recycli 50.2 67 0.0014 27.4 6.7 73 27-100 94-166 (176)
27 PRK00083 frr ribosome recyclin 48.4 74 0.0016 27.3 6.8 72 27-99 103-174 (185)
28 CHL00033 ycf3 photosystem I as 47.5 71 0.0015 25.8 6.4 49 138-192 52-100 (168)
29 TIGR00990 3a0801s09 mitochondr 46.3 32 0.0007 34.2 4.9 54 137-192 483-536 (615)
30 PRK12794 flaF flagellar biosyn 45.1 25 0.00054 28.3 3.2 53 173-225 8-60 (122)
31 COG3947 Response regulator con 41.2 47 0.001 31.2 4.7 106 110-225 217-335 (361)
32 TIGR02795 tol_pal_ybgF tol-pal 40.0 1.2E+02 0.0025 22.0 6.1 50 138-193 56-105 (119)
33 COG4499 Predicted membrane pro 39.9 56 0.0012 31.6 5.1 46 163-208 231-281 (434)
34 PRK12793 flaF flagellar biosyn 39.7 32 0.00068 27.5 2.9 52 173-225 6-58 (115)
35 PRK02603 photosystem I assembl 38.1 1.3E+02 0.0028 24.5 6.6 50 138-193 52-101 (172)
36 PF12688 TPR_5: Tetratrico pep 37.0 1.6E+02 0.0036 23.2 6.7 50 138-193 18-67 (120)
37 PF06552 TOM20_plant: Plant sp 33.5 2.1E+02 0.0046 24.8 7.2 79 124-212 38-122 (186)
38 PF12895 Apc3: Anaphase-promot 33.3 65 0.0014 22.8 3.6 12 177-188 71-82 (84)
39 PF10516 SHNi-TPR: SHNi-TPR; 32.3 54 0.0012 20.9 2.6 37 119-158 2-38 (38)
40 TIGR03504 FimV_Cterm FimV C-te 32.3 84 0.0018 20.6 3.6 40 167-214 3-42 (44)
41 PLN03088 SGT1, suppressor of 32.1 1.4E+02 0.0031 27.8 6.5 23 167-190 74-96 (356)
42 PRK15359 type III secretion sy 31.7 1.9E+02 0.004 23.1 6.4 47 137-192 74-120 (144)
43 PRK15331 chaperone protein Sic 29.6 2.6E+02 0.0056 23.8 7.0 70 137-221 87-156 (165)
44 PF13432 TPR_16: Tetratricopep 29.5 1.7E+02 0.0036 19.3 5.0 46 138-192 14-59 (65)
45 KOG1107 Membrane coat complex 28.2 1.5E+02 0.0032 30.8 6.2 43 137-179 656-699 (760)
46 TIGR00990 3a0801s09 mitochondr 28.1 1.8E+02 0.0039 28.9 6.8 61 155-219 537-597 (615)
47 PRK02603 photosystem I assembl 27.7 3.3E+02 0.0071 22.0 8.2 13 138-150 89-101 (172)
48 KOG2002 TPR-containing nuclear 27.6 1.3E+02 0.0028 32.4 5.8 51 142-196 250-302 (1018)
49 TIGR02552 LcrH_SycD type III s 26.9 2.4E+02 0.0052 21.2 6.1 47 138-193 68-114 (135)
50 TIGR02521 type_IV_pilW type IV 26.2 2.4E+02 0.0053 22.4 6.3 15 177-191 148-162 (234)
51 PRK10866 outer membrane biogen 26.1 2E+02 0.0042 25.4 6.0 36 187-222 140-176 (243)
52 TIGR02521 type_IV_pilW type IV 25.9 2.3E+02 0.0049 22.5 6.0 29 164-193 170-198 (234)
53 PRK10370 formate-dependent nit 25.8 2E+02 0.0043 24.4 5.8 48 138-193 90-139 (198)
54 PF09986 DUF2225: Uncharacteri 24.7 4.7E+02 0.01 22.7 8.2 60 137-198 93-155 (214)
55 TIGR02795 tol_pal_ybgF tol-pal 23.9 2.8E+02 0.006 19.9 5.7 49 138-192 19-67 (119)
56 PHA02103 hypothetical protein 22.9 26 0.00057 27.9 -0.2 14 117-130 78-91 (135)
57 PF08631 SPO22: Meiosis protei 22.6 5.5E+02 0.012 22.8 9.1 88 138-226 10-100 (278)
58 PF03755 YicC_N: YicC-like fam 22.1 1.9E+02 0.0041 23.8 4.9 63 138-200 81-147 (159)
59 PF13174 TPR_6: Tetratricopept 21.9 1.6E+02 0.0035 16.4 3.6 25 167-192 4-28 (33)
60 PF08717 nsp8: nsp8 replicase; 21.7 1E+02 0.0023 26.8 3.2 38 137-194 15-52 (199)
61 KOG0547 Translocase of outer m 21.3 1E+02 0.0023 30.9 3.5 45 138-191 132-176 (606)
62 PRK15326 type III secretion sy 21.2 1.7E+02 0.0036 22.0 3.8 35 137-173 20-58 (80)
63 COG4105 ComL DNA uptake lipopr 20.9 2.9E+02 0.0063 25.1 6.1 72 144-221 87-167 (254)
64 PF11568 Med29: Mediator compl 20.3 2.5E+02 0.0055 23.4 5.2 49 41-93 10-69 (148)
65 PF07309 FlaF: Flagellar prote 20.0 1E+02 0.0022 24.4 2.6 45 180-225 13-57 (113)
No 1
>COG5040 BMH1 14-3-3 family protein [Signal transduction mechanisms]
Probab=100.00 E-value=3e-91 Score=592.90 Aligned_cols=228 Identities=75% Similarity=1.140 Sum_probs=223.2
Q ss_pred CCchHHhHHHHHHHHHHhcccc---------ccCCCCCCHHHHHHHHHHHHhhhhhhhHHHHHHHhHHhhHhhhcchhHH
Q 025713 1 MDKDRENFVYIAKLAEQAERYD---------ANLDVELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEEARGNELNV 71 (249)
Q Consensus 1 m~~~re~li~~Aklaeq~eRy~---------v~~~~~Ls~EERnLlSvAyKn~i~~~R~s~R~l~~ieq~~~~~~~~~~~ 71 (249)
|+..|++.+|+|+|++|||||+ +..+.+|+.+|||||||||||+||+||.|||++++++||++++++..++
T Consensus 1 Ms~~rE~svylAkLaeqAERYe~MvenMk~vas~~~eLsVeeRNLlSVAYKNvigaRRaSWRivsSieQKeEsk~~~~qv 80 (268)
T COG5040 1 MSTSREDSVYLAKLAEQAERYEEMVENMKLVASSGQELSVEERNLLSVAYKNVIGARRASWRIVSSIEQKEESKGNTHQV 80 (268)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHhcCCChhHH
Confidence 7888999999999999999999 3668999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCcchhhhheeccccchhhhhcccchhhHHHHHHHHHHHHHHHHHH
Q 025713 72 KRIKEYRQKVEAELSKISTDIMQVIDEHLIPSCTGGESTVFYYKMKGDYYRYLAEFKTGDERKDVADLSMKAYQAASTTA 151 (249)
Q Consensus 72 ~~i~~yk~ki~~EL~~~C~eii~lid~~Llp~~~~~eskvfy~KmkgDyyRY~aE~~~~~~~~~~~~~A~~aY~~A~~~a 151 (249)
.+|+.|+++|++||..||++|+.+|+++|||.+++.|++|||+|||||||||+|||..|+.+.++.+.+.++|+.|.++|
T Consensus 81 ~lI~eyrkkiE~EL~~icddiL~vl~~hlipaa~~~EskvFyyKMKGDYyRYlAEf~~G~~~~e~a~~slE~YK~AseiA 160 (268)
T COG5040 81 ELIKEYRKKIETELTKICDDILSVLEKHLIPAATTGESKVFYYKMKGDYYRYLAEFSVGEAREEAADSSLEAYKAASEIA 160 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccceEEEEeecchHHHHHHHhccchHhHHHHHhHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCcchhhhhHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhhccCCcccHHhHHHHHHHHHhhHhhhccCCC
Q 025713 152 EAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDIP 228 (249)
Q Consensus 152 ~~~L~pt~pirLgLaLN~SVF~yei~~~~~~A~~iak~afd~Ai~~ld~l~ee~y~ds~~ilqlLrdNl~~W~~e~~ 228 (249)
...||||||||||||||||||||||+|++++||.|||+|||+||++||+|+|++|+|+|+||||||||||+||++.+
T Consensus 161 ~teLpPT~PirLGLALNfSVFyYEIlnspdkAC~lAKqaFDeAI~ELDtLSEEsYkDSTLIMQLLRDNLTLWTSd~e 237 (268)
T COG5040 161 TTELPPTHPIRLGLALNFSVFYYEILNSPDKACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDAE 237 (268)
T ss_pred hccCCCCCchhhhheecceeeeeecccCcHHHHHHHHHHHHHHHHHHhhhhhhhhcchHHHHHHHHhcceeeecccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999754
No 2
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=100.00 E-value=4e-87 Score=593.44 Aligned_cols=229 Identities=75% Similarity=1.120 Sum_probs=219.4
Q ss_pred HHhHHHHHHHHHHhcccc---------ccC-C-CCCCHHHHHHHHHHHHhhhhhhhHHHHHHHhHHhhHhhhcchhHHHH
Q 025713 5 RENFVYIAKLAEQAERYD---------ANL-D-VELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEEARGNELNVKR 73 (249)
Q Consensus 5 re~li~~Aklaeq~eRy~---------v~~-~-~~Ls~EERnLlSvAyKn~i~~~R~s~R~l~~ieq~~~~~~~~~~~~~ 73 (249)
|++++|+|||++|||||+ |+. + .+||.||||||||||||+||++|+|||+|+++++++..+|++.+++.
T Consensus 1 re~~v~~Aklaeq~eRyddm~~~mk~~~~~~~~~eLt~EERnLLSvayKn~i~~~R~s~R~i~sie~ke~~~~~~~~~~~ 80 (244)
T smart00101 1 REENVYMAKLAEQAERYEEMVEFMEKVAKTVDSEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEDHVAS 80 (244)
T ss_pred ChHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHhhhhcccHHHHHHHhHHHHhhhccCchHHHHH
Confidence 689999999999999999 465 5 49999999999999999999999999999999999877777788899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCcchhhhheeccccchhhhhcccchhhHHHHHHHHHHHHHHHHHHHh
Q 025713 74 IKEYRQKVEAELSKISTDIMQVIDEHLIPSCTGGESTVFYYKMKGDYYRYLAEFKTGDERKDVADLSMKAYQAASTTAEA 153 (249)
Q Consensus 74 i~~yk~ki~~EL~~~C~eii~lid~~Llp~~~~~eskvfy~KmkgDyyRY~aE~~~~~~~~~~~~~A~~aY~~A~~~a~~ 153 (249)
++.||++|++||..+|++||++||++|||.+++++++|||+|||||||||+|||..|+++++++++|+++|++|+++|++
T Consensus 81 ~~~yr~kie~EL~~iC~eil~lid~~Lip~~~~~eskVFy~KmKGDYyRYlaE~~~~~e~~~~~~~a~~aY~~A~e~a~~ 160 (244)
T smart00101 81 IKEYRGKIETELSKICDGILKLLESHLIPSASAAESKVFYLKMKGDYHRYLAEFKTGAERKEAAENTLVAYKSAQDIALA 160 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCccccCcHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cCCCCCcchhhhhHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhhccCCcccHHhHHHHHHHHHhhHhhhccCCCCCCCc
Q 025713 154 ELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDIPEDGGD 233 (249)
Q Consensus 154 ~L~pt~pirLgLaLN~SVF~yei~~~~~~A~~iak~afd~Ai~~ld~l~ee~y~ds~~ilqlLrdNl~~W~~e~~~~~~~ 233 (249)
+|||||||||||+||||||||||+|++++||+||++|||+|++++|+++|++|+|+|+|||||||||++|+++++++++.
T Consensus 161 ~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~Ai~~ld~l~ee~y~dstlImqLLrDNL~lW~~~~~~~~~~ 240 (244)
T smart00101 161 ELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSDLQDDGAD 240 (244)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhccChhhhHHHHHHHHHHHHHHHhccCCCCcchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999986655443
No 3
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=100.00 E-value=1.8e-82 Score=562.42 Aligned_cols=226 Identities=70% Similarity=1.091 Sum_probs=213.5
Q ss_pred HHhHHHHHHHHHHhcccc---------ccCCCCCCHHHHHHHHHHHHhhhhhhhHHHHHHHhHHhhHhhhcchhHHHHHH
Q 025713 5 RENFVYIAKLAEQAERYD---------ANLDVELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEEARGNELNVKRIK 75 (249)
Q Consensus 5 re~li~~Aklaeq~eRy~---------v~~~~~Ls~EERnLlSvAyKn~i~~~R~s~R~l~~ieq~~~~~~~~~~~~~i~ 75 (249)
|++++|||||++|||||+ |+.+++||.|||||||+||||+|+++|+|||+|++++++++.+|++..++.++
T Consensus 1 Re~li~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~~i~ 80 (236)
T PF00244_consen 1 REELIYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGNEKQVKLIK 80 (236)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHH
T ss_pred ChHHHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccchhHHHHHHH
Confidence 899999999999999999 57799999999999999999999999999999999999999888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCcchhhhheeccccchhhhhcccchhhHHHHHHHHHHHHHHHHHHHhcC
Q 025713 76 EYRQKVEAELSKISTDIMQVIDEHLIPSCTGGESTVFYYKMKGDYYRYLAEFKTGDERKDVADLSMKAYQAASTTAEAEL 155 (249)
Q Consensus 76 ~yk~ki~~EL~~~C~eii~lid~~Llp~~~~~eskvfy~KmkgDyyRY~aE~~~~~~~~~~~~~A~~aY~~A~~~a~~~L 155 (249)
+||++|++||..+|++||++||++|+|.+++++++|||+|||||||||+|||..++++.+++++|.++|++|+++|+.+|
T Consensus 81 ~yk~kie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L 160 (236)
T PF00244_consen 81 DYKKKIEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKEL 160 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999889
Q ss_pred CCCCcchhhhhHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhhccCCcccHHhHHHHHHHHHhhHhhhccCCCCC
Q 025713 156 SPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDIPED 230 (249)
Q Consensus 156 ~pt~pirLgLaLN~SVF~yei~~~~~~A~~iak~afd~Ai~~ld~l~ee~y~ds~~ilqlLrdNl~~W~~e~~~~ 230 (249)
|||||+||||+||||||||||+|++++||+||++||++|+++++++++++|+|+++|||||||||++|+++.+++
T Consensus 161 ~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~~~l~~l~e~~~~d~~~ilqlLrdNl~lW~~e~~~~ 235 (236)
T PF00244_consen 161 PPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAISELDTLSEESYKDSTLILQLLRDNLTLWTSEEEEE 235 (236)
T ss_dssp CTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHGGGGSHTTTHHHHHHHHHHHHHHHHHHTTT----
T ss_pred CCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHhcccccccC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999987665
No 4
>KOG0841 consensus Multifunctional chaperone (14-3-3 family) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.3e-79 Score=529.73 Aligned_cols=231 Identities=79% Similarity=1.158 Sum_probs=223.6
Q ss_pred hHHhHHHHHHHHHHhcccc---------ccCCCCCCHHHHHHHHHHHHhhhhhhhHHHHHHHhHHhhHhhhcchhHHHHH
Q 025713 4 DRENFVYIAKLAEQAERYD---------ANLDVELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEEARGNELNVKRI 74 (249)
Q Consensus 4 ~re~li~~Aklaeq~eRy~---------v~~~~~Ls~EERnLlSvAyKn~i~~~R~s~R~l~~ieq~~~~~~~~~~~~~i 74 (249)
+|+++|++|++++|++||+ ++.+.+||.+|||||||+|||+|+++|+|||+|++|||+++.++++.++..+
T Consensus 1 ~~~~~v~~akl~eqaery~~m~~~Mk~v~~~~~eLtveernllsvayknVigarrasWriisSiEqKees~~~e~~v~~i 80 (247)
T KOG0841|consen 1 EREELVYKAKLAEQAERYDEMVEAMKKVAELDVELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESKGNEEKVKMI 80 (247)
T ss_pred CHHHHHHHHHHHHHHHhHHHHHHHHHhhcccchhhhHHHHhhhhhhhccccchhHHHHHHhhhhhhcccCCCcchHHHHH
Confidence 4899999999999999999 3678999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCCCC-CcchhhhheeccccchhhhhcccchhhHHHHHHHHHHHHHHHHHHHh
Q 025713 75 KEYRQKVEAELSKISTDIMQVIDEHLIPSCTG-GESTVFYYKMKGDYYRYLAEFKTGDERKDVADLSMKAYQAASTTAEA 153 (249)
Q Consensus 75 ~~yk~ki~~EL~~~C~eii~lid~~Llp~~~~-~eskvfy~KmkgDyyRY~aE~~~~~~~~~~~~~A~~aY~~A~~~a~~ 153 (249)
..||++|+.||..+|++++.++|.+|+|+++. .|++|||+|||||||||++||..|++|++++++++++|+.|+++|+.
T Consensus 81 ~~yr~~vE~El~~ic~~iL~lld~~Li~sa~~~~es~vf~~kmKgdy~rylae~~sg~erke~~~~sl~aYk~a~~ia~~ 160 (247)
T KOG0841|consen 81 KEYRQKVETELAKICDDILSLLDKHLIPSATLPGESKVFYLKMKGDYYRYLAEFASGDERKEAADQSLEAYKEASEIAKA 160 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccceeeeeccchhHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999988 78899999999999999999999999999999999999999999998
Q ss_pred cCCCCCcchhhhhHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhhccCCcccHHhHHHHHHHHHhhHhhhccCCCCCCCc
Q 025713 154 ELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDIPEDGGD 233 (249)
Q Consensus 154 ~L~pt~pirLgLaLN~SVF~yei~~~~~~A~~iak~afd~Ai~~ld~l~ee~y~ds~~ilqlLrdNl~~W~~e~~~~~~~ 233 (249)
.|+|||||||||+||||||||||+|.|++||.|||+|||+||.++|++++++|+|||+||||||||+|+|+++++++++.
T Consensus 161 ~l~PthPirLgLaLnfSvf~yeilnsPe~ac~lak~a~d~ai~eldtl~e~sykdStlimqllrdnltlWts~~~~~~~~ 240 (247)
T KOG0841|consen 161 ELQPTHPIRLGLALNFSVFYYEILNSPERACSLAKQAFDEAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDTQGDEKE 240 (247)
T ss_pred cCCCCCchHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHhhccccHHHHhhhHHHHHHHHHhhhhhccCccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998877655
Q ss_pred h
Q 025713 234 E 234 (249)
Q Consensus 234 ~ 234 (249)
.
T Consensus 241 ~ 241 (247)
T KOG0841|consen 241 A 241 (247)
T ss_pred c
Confidence 4
No 5
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.18 E-value=0.011 Score=42.31 Aligned_cols=54 Identities=26% Similarity=0.358 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcchhhhhHHHHHHHHHHhCChHHHHHHHHHHHHH
Q 025713 138 DLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDE 193 (249)
Q Consensus 138 ~~A~~aY~~A~~~a~~~L~pt~pirLgLaLN~SVF~yei~~~~~~A~~iak~afd~ 193 (249)
+.|...|++|+++ ...+++.||...-...|.+..++. +|+.++|+...++|++-
T Consensus 22 ~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~-~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 22 DEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYR-LGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhh
Confidence 6799999999999 567899888777777888887766 79999999999998764
No 6
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=90.61 E-value=1.8 Score=32.61 Aligned_cols=73 Identities=22% Similarity=0.244 Sum_probs=52.8
Q ss_pred cchhhhhcccchhhHHHHHHHHHHHHHHHHHHHhcCCCCCcchhhhh-HHHHHHHHHHhCChHHHHHHHHHHHHHHHHhh
Q 025713 120 YYRYLAEFKTGDERKDVADLSMKAYQAASTTAEAELSPTHPIRLGLA-LNFSVFYYEIMNSPERACHLAKQAFDEAISEL 198 (249)
Q Consensus 120 yyRY~aE~~~~~~~~~~~~~A~~aY~~A~~~a~~~L~pt~pirLgLa-LN~SVF~yei~~~~~~A~~iak~afd~Ai~~l 198 (249)
|.+|+--+..++- ..|.+...+.++.+.....+.++..+..+ ||.+.+++. +|++++|+...++|++-|-..-
T Consensus 2 ~l~~~~~~~~~dy-----~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~-~G~~~~A~~~l~eAi~~Are~~ 75 (94)
T PF12862_consen 2 YLRYLNALRSGDY-----SEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRR-FGHYEEALQALEEAIRLARENG 75 (94)
T ss_pred HHHHHHHHHcCCH-----HHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHHC
Confidence 3455555555542 55888888888998877776655555555 778887666 6999999999999988887543
No 7
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=82.39 E-value=6.5 Score=26.82 Aligned_cols=46 Identities=15% Similarity=0.216 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcchhhhhHHHHHHHHHHhC-ChHHHHHHHHHHHH
Q 025713 138 DLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMN-SPERACHLAKQAFD 192 (249)
Q Consensus 138 ~~A~~aY~~A~~~a~~~L~pt~pirLgLaLN~SVF~yei~~-~~~~A~~iak~afd 192 (249)
+.|...|++|+++. |-.-.+..|.++-|+. +| ++++|+...++|+.
T Consensus 20 ~~A~~~~~~ai~~~--------p~~~~~~~~~g~~~~~-~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 20 EEAIEYFEKAIELD--------PNNAEAYYNLGLAYMK-LGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHS--------TTHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC--------CCCHHHHHHHHHHHHH-hCccHHHHHHHHHHHHH
Confidence 67899999998762 4444577788887666 57 79999998888764
No 8
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=80.01 E-value=1.8 Score=26.42 Aligned_cols=23 Identities=26% Similarity=0.440 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCc
Q 025713 138 DLSMKAYQAASTTAEAELSPTHP 160 (249)
Q Consensus 138 ~~A~~aY~~A~~~a~~~L~pt~p 160 (249)
+.|...|++|+.+.+..++|.||
T Consensus 19 ~~A~~~~~~al~~~~~~~G~~Hp 41 (42)
T PF13374_consen 19 EEALELLEEALEIRERLLGPDHP 41 (42)
T ss_dssp HHHHHHHHHHHHHH---------
T ss_pred chhhHHHHHHHHHHHHHhccccc
Confidence 67999999999999888899998
No 9
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=74.66 E-value=5.2 Score=31.85 Aligned_cols=41 Identities=15% Similarity=0.152 Sum_probs=33.8
Q ss_pred hhhheeccccchhhhhcccc-hhhHHHHHHHHHHHHHHHHHH
Q 025713 111 VFYYKMKGDYYRYLAEFKTG-DERKDVADLSMKAYQAASTTA 151 (249)
Q Consensus 111 vfy~KmkgDyyRY~aE~~~~-~~~~~~~~~A~~aY~~A~~~a 151 (249)
.|-+...|+.|..+|....+ +-+..+...|.+||.+|..++
T Consensus 33 ~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Ls 74 (111)
T PF04781_consen 33 WLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELS 74 (111)
T ss_pred HHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccC
Confidence 37789999999999998654 566678889999999997655
No 10
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=70.91 E-value=26 Score=34.88 Aligned_cols=178 Identities=16% Similarity=0.169 Sum_probs=114.6
Q ss_pred hHHHHHHHHHHhcccc---------c----cCC--CCCCH-HHHHHHHHHHHhhhhhhhHHHHHHH-hHHhhHhhhcc--
Q 025713 7 NFVYIAKLAEQAERYD---------A----NLD--VELTV-EERNLLSVGYKNVIGARRASWRILS-SIEQKEEARGN-- 67 (249)
Q Consensus 7 ~li~~Aklaeq~eRy~---------v----~~~--~~Ls~-EERnLlSvAyKn~i~~~R~s~R~l~-~ieq~~~~~~~-- 67 (249)
.+.++|.+..+.+||+ + ... ..+-. .-.+-|++.|-++ +..+.|..+.. ++...+...|.
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~-~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSL-GKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 3456788888889999 1 111 12222 2344466766654 45667777764 34444444443
Q ss_pred hhHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHhccCCCCCCCcchhhhheeccccchhhhhcccchhhHHHHHHHHH
Q 025713 68 ELNVKRIKE-----YRQKVEAELSKISTDIMQVIDEHLIPSCTGGESTVFYYKMKGDYYRYLAEFKTGDERKDVADLSMK 142 (249)
Q Consensus 68 ~~~~~~i~~-----yk~ki~~EL~~~C~eii~lid~~Llp~~~~~eskvfy~KmkgDyyRY~aE~~~~~~~~~~~~~A~~ 142 (249)
+.....+.+ |+.-=-.|-...|..+++|..+. +.++.++... .+.++..-.....-.+.|..
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~--~~~~~~~v~~-----------~l~~~~~~~~~~~~~Eea~~ 346 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKL--LGASHPEVAA-----------QLSELAAILQSMNEYEEAKK 346 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHh--hccChHHHHH-----------HHHHHHHHHHHhcchhHHHH
Confidence 333333332 34444567889999999999883 3333333221 12333222222233578999
Q ss_pred HHHHHHHHHHhcCCCCCcchhhhhHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhhc
Q 025713 143 AYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELD 199 (249)
Q Consensus 143 aY~~A~~~a~~~L~pt~pirLgLaLN~SVF~yei~~~~~~A~~iak~afd~Ai~~ld 199 (249)
.|+.|+.+....+.+-||.-=|+.-|+++-||- +|..++|.++.++|+...-+..+
T Consensus 347 l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~-~gk~~ea~~~~k~ai~~~~~~~~ 402 (508)
T KOG1840|consen 347 LLQKALKIYLDAPGEDNVNLAKIYANLAELYLK-MGKYKEAEELYKKAIQILRELLG 402 (508)
T ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHHHHHH-hcchhHHHHHHHHHHHHHHhccc
Confidence 999999999888999999999999999998877 79999999999999887754443
No 11
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=69.72 E-value=13 Score=36.97 Aligned_cols=54 Identities=24% Similarity=0.359 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcchhhhhHHHHHHHHHHhCChHHHHHHHHHHHH
Q 025713 138 DLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFD 192 (249)
Q Consensus 138 ~~A~~aY~~A~~~a~~~L~pt~pirLgLaLN~SVF~yei~~~~~~A~~iak~afd 192 (249)
..|...|++|+.+-+..+.++||-.--+.-|.||-||.. |+..+|-..++.|..
T Consensus 258 ~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~-GKf~EA~~~~e~Al~ 311 (508)
T KOG1840|consen 258 DEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQ-GKFAEAEEYCERALE 311 (508)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcc-CChHHHHHHHHHHHH
Confidence 568999999999999999999999888888999998774 888887777776643
No 12
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=64.40 E-value=12 Score=26.09 Aligned_cols=38 Identities=24% Similarity=0.277 Sum_probs=30.3
Q ss_pred CcchhhhhHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhh
Q 025713 159 HPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISEL 198 (249)
Q Consensus 159 ~pirLgLaLN~SVF~yei~~~~~~A~~iak~afd~Ai~~l 198 (249)
||.......|.+..|++ +|+.++|+...++|++- ...+
T Consensus 1 H~~~a~~~~~la~~~~~-~~~~~~A~~~~~~al~~-~~~~ 38 (78)
T PF13424_consen 1 HPDTANAYNNLARVYRE-LGRYDEALDYYEKALDI-EEQL 38 (78)
T ss_dssp -HHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHH-HHHT
T ss_pred CHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHH-HHHH
Confidence 78888888899998886 79999999999999888 5444
No 13
>PF01765 RRF: Ribosome recycling factor; InterPro: IPR023584 The ribosome recycling factor or ribosome release factor (RRF) dissociates ribosomes from mRNA after termination of translation, and is essential for bacterial growth []. Thus ribosomes are 'recycled' and ready for another round of protein synthesis. This entry represents a domain found in ribosome recycling factors.; PDB: 3R8N_Y 1Y69_8 1ISE_A 1EK8_A 1DD5_A 1WIH_A 2Z4L_6 2QBE_6 2V46_Y 1EH1_A ....
Probab=60.75 E-value=43 Score=27.98 Aligned_cols=73 Identities=21% Similarity=0.165 Sum_probs=46.8
Q ss_pred CCCCCHHHHHHHHHHHHhhhhhhhHHHHHHHhHHhhHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 025713 26 DVELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEEARGNELNVKRIKEYRQKVEAELSKISTDIMQVIDEH 99 (249)
Q Consensus 26 ~~~Ls~EERnLlSvAyKn~i~~~R~s~R~l~~ieq~~~~~~~~~~~~~i~~yk~ki~~EL~~~C~eii~lid~~ 99 (249)
-|.+|.|-|.-+....|...-..|.++|.+..--.+.-.+ .......-++-..+++++|..+-+..+.-||..
T Consensus 84 iP~~T~E~R~~l~k~~k~~~E~~k~~iR~iR~~~~~~lkk-~~~~~~~s~D~~~~~~~~iq~l~~~~~~~id~~ 156 (165)
T PF01765_consen 84 IPPPTEERRKELVKQAKKIAEEAKVSIRNIRRDAMKKLKK-LKKSKEISEDDIKKLEKEIQKLTDKYIKKIDEL 156 (165)
T ss_dssp --SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHTTSS-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhccCCCCchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3789999999999999999999999999986422221100 000001234455666777777777777776654
No 14
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=59.85 E-value=9.4 Score=23.31 Aligned_cols=34 Identities=21% Similarity=0.282 Sum_probs=23.4
Q ss_pred HHHHHHHHHHhcCCCCCcchhhhhHHHHHHHHHHhCChHHHHH
Q 025713 143 AYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACH 185 (249)
Q Consensus 143 aY~~A~~~a~~~L~pt~pirLgLaLN~SVF~yei~~~~~~A~~ 185 (249)
+|++|+++ .|.|| ....|++++|+. .|+.++|++
T Consensus 1 ~y~kAie~-----~P~n~---~a~~nla~~~~~-~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIEL-----NPNNA---EAYNNLANLYLN-QGDYEEAIA 34 (34)
T ss_pred ChHHHHHH-----CCCCH---HHHHHHHHHHHH-CcCHHhhcC
Confidence 36666643 45554 456788888876 599999863
No 15
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=58.37 E-value=88 Score=25.26 Aligned_cols=69 Identities=16% Similarity=0.064 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcchhhhhHHHHHHHH------HHhCChHHHHHHHHHHHHHHHHhhccCCcccHHhHHH
Q 025713 138 DLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYY------EIMNSPERACHLAKQAFDEAISELDTLSEESYKDSTL 211 (249)
Q Consensus 138 ~~A~~aY~~A~~~a~~~L~pt~pirLgLaLN~SVF~y------ei~~~~~~A~~iak~afd~Ai~~ld~l~ee~y~ds~~ 211 (249)
+.|..+|++|+.+ .|.+ .+...|.++.++ ..+|+.+.|.....+|+.--- ..-.++.+.+.++..
T Consensus 89 ~eA~~~~~~Al~~-----~~~~---~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~-~a~~~~p~~~~~~~~ 159 (168)
T CHL00033 89 TKALEYYFQALER-----NPFL---PQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWK-QAIALAPGNYIEAQN 159 (168)
T ss_pred HHHHHHHHHHHHh-----CcCc---HHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHH-HHHHhCcccHHHHHH
Confidence 5688889888855 3333 233444455444 257898888877777654322 222345555666655
Q ss_pred HHHH
Q 025713 212 IMQL 215 (249)
Q Consensus 212 ilql 215 (249)
-|..
T Consensus 160 ~~~~ 163 (168)
T CHL00033 160 WLKI 163 (168)
T ss_pred HHHH
Confidence 5443
No 16
>COG0233 Frr Ribosome recycling factor [Translation, ribosomal structure and biogenesis]
Probab=57.77 E-value=44 Score=28.98 Aligned_cols=74 Identities=22% Similarity=0.205 Sum_probs=49.9
Q ss_pred CCCCCHHHHHHHHHHHHhhhhhhhHHHHHHHhHHhhHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 025713 26 DVELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEEARGNELNVKRIKEYRQKVEAELSKISTDIMQVIDEHL 100 (249)
Q Consensus 26 ~~~Ls~EERnLlSvAyKn~i~~~R~s~R~l~~ieq~~~~~~~~~~~~~i~~yk~ki~~EL~~~C~eii~lid~~L 100 (249)
-|+||.|-|.=|..-.|...-..|.|.|.|.-=.. ...+...+-...-++-.++.++++..+.++.+.-||..+
T Consensus 104 ~P~lTeErRkelvK~~k~~~EeakvaiRniRrda~-d~iKK~~K~~~isEDe~k~~e~~iQKlTd~yi~~iD~~~ 177 (187)
T COG0233 104 LPPLTEERRKELVKVAKKYAEEAKVAVRNIRRDAN-DKIKKLEKDKEISEDEVKKAEEEIQKLTDEYIKKIDELL 177 (187)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48999999999999999999999999998842110 000100000113355666777888888888888887654
No 17
>KOG4759 consensus Ribosome recycling factor [Translation, ribosomal structure and biogenesis]
Probab=57.73 E-value=55 Score=29.83 Aligned_cols=90 Identities=21% Similarity=0.208 Sum_probs=61.7
Q ss_pred HHHHHHHHHHhcccc---------ccC-CCCCCHHHHHHHHHHHHhhhhhhhHHHHHHHhHHhhHhhhcchhHHHHHHHH
Q 025713 8 FVYIAKLAEQAERYD---------ANL-DVELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEEARGNELNVKRIKEY 77 (249)
Q Consensus 8 li~~Aklaeq~eRy~---------v~~-~~~Ls~EERnLlSvAyKn~i~~~R~s~R~l~~ieq~~~~~~~~~~~~~i~~y 77 (249)
.+--+..|-++.+++ +.. -|++|.|-|.-|+-..|.+...+|.|+|-+..=--+...+... +.-.+-
T Consensus 154 ~ikai~kAI~~S~lnltP~~dg~~l~vsiP~~T~E~Re~laK~~~~~~ee~K~slr~ir~~~~kk~~k~~~---~~~~D~ 230 (263)
T KOG4759|consen 154 DIKAILKAIEASGLNLTPNLDGTVLRVSIPPVTKESREKLAKVLKRYFEEYKQSLRKIRTKSIKKSKKNKK---SLSEDE 230 (263)
T ss_pred HHHHHHHHHHhCCCCCCcCCCCcEEEecCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---cCChhH
Confidence 344455666677776 122 3789999999999999999999999999986422222212111 122455
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Q 025713 78 RQKVEAELSKISTDIMQVIDEHL 100 (249)
Q Consensus 78 k~ki~~EL~~~C~eii~lid~~L 100 (249)
..+++.+|..+.++.+..+|..|
T Consensus 231 vkkae~~l~~l~k~~v~~ld~ll 253 (263)
T KOG4759|consen 231 VKKAEAELQKLAKDAVNKLDDLL 253 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 66788888888888888887654
No 18
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=57.48 E-value=48 Score=22.54 Aligned_cols=45 Identities=16% Similarity=0.150 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcchhhhhHHHHHHHHHHhCChHHHHHHHHHHH
Q 025713 138 DLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAF 191 (249)
Q Consensus 138 ~~A~~aY~~A~~~a~~~L~pt~pirLgLaLN~SVF~yei~~~~~~A~~iak~af 191 (249)
+.|.++++.++.+ +|-...+-++++.+++. +|+.++|+....+++
T Consensus 12 ~~A~~~~~~~l~~--------~p~~~~~~~~~a~~~~~-~g~~~~A~~~l~~~l 56 (73)
T PF13371_consen 12 EEALEVLERALEL--------DPDDPELWLQRARCLFQ-LGRYEEALEDLERAL 56 (73)
T ss_pred HHHHHHHHHHHHh--------CcccchhhHHHHHHHHH-hccHHHHHHHHHHHH
Confidence 3455555555433 45566677778888777 699999988777766
No 19
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=55.20 E-value=21 Score=31.35 Aligned_cols=78 Identities=23% Similarity=0.321 Sum_probs=45.9
Q ss_pred HHHHHHHHhcccc-----ccCCCCCCHHHHHHHHHHHHhhhhhhhHHHHHHHh-HHhhHhhhcchhHHHHHHHHHHHHHH
Q 025713 10 YIAKLAEQAERYD-----ANLDVELTVEERNLLSVGYKNVIGARRASWRILSS-IEQKEEARGNELNVKRIKEYRQKVEA 83 (249)
Q Consensus 10 ~~Aklaeq~eRy~-----v~~~~~Ls~EERnLlSvAyKn~i~~~R~s~R~l~~-ieq~~~~~~~~~~~~~i~~yk~ki~~ 83 (249)
|+++|..+-.||+ ++..-+..++|-.-+-..++.-+...+..+|.-.. +..-+ ..| .-+.+=..
T Consensus 123 y~~~l~~~eqry~aLK~hAeekL~~ANeei~~v~~~~~~e~~aLqa~lkk~e~~~~SLe---------~~L-eQK~kEn~ 192 (207)
T PF05010_consen 123 YEERLKKEEQRYQALKAHAEEKLEKANEEIAQVRSKHQAELLALQASLKKEEMKVQSLE---------ESL-EQKTKENE 192 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH---------HHH-HHHHHHHH
Confidence 6788888888998 22233445666666666666666667777665421 00000 001 11223347
Q ss_pred HHHHHHHHHHHHHH
Q 025713 84 ELSKISTDIMQVID 97 (249)
Q Consensus 84 EL~~~C~eii~lid 97 (249)
||..||+++|.=++
T Consensus 193 ELtkICDeLI~k~~ 206 (207)
T PF05010_consen 193 ELTKICDELISKMG 206 (207)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999987553
No 20
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=54.40 E-value=39 Score=22.64 Aligned_cols=44 Identities=16% Similarity=0.167 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcchhhhhHHHHHHHHHHhCChHHHHHHHHHH
Q 025713 138 DLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQA 190 (249)
Q Consensus 138 ~~A~~aY~~A~~~a~~~L~pt~pirLgLaLN~SVF~yei~~~~~~A~~iak~a 190 (249)
+.|...|++++.. +|-...+.++++..|+. .|+.++|..+..++
T Consensus 8 ~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~-~g~~~~A~~~l~~~ 51 (68)
T PF14559_consen 8 DEAIELLEKALQR--------NPDNPEARLLLAQCYLK-QGQYDEAEELLERL 51 (68)
T ss_dssp HHHHHHHHHHHHH--------TTTSHHHHHHHHHHHHH-TT-HHHHHHHHHCC
T ss_pred HHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHH
Confidence 4567777777643 34455556667777777 59999988876654
No 21
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=52.67 E-value=94 Score=26.14 Aligned_cols=71 Identities=17% Similarity=0.157 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCcchhhhhHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhhccCCccc--HHhHHHH
Q 025713 135 DVADLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLSEES--YKDSTLI 212 (249)
Q Consensus 135 ~~~~~A~~aY~~A~~~a~~~L~pt~pirLgLaLN~SVF~yei~~~~~~A~~iak~afd~Ai~~ld~l~ee~--y~ds~~i 212 (249)
.--+.|..+|..|..+ .|.||- ...|.++-+.- +|+.+.|+ ++|+.||.-....++.. ..-+...
T Consensus 83 g~~~~AI~aY~~A~~L-----~~ddp~---~~~~ag~c~L~-lG~~~~A~----~aF~~Ai~~~~~~~~~~~l~~~A~~~ 149 (157)
T PRK15363 83 KHWGEAIYAYGRAAQI-----KIDAPQ---APWAAAECYLA-CDNVCYAI----KALKAVVRICGEVSEHQILRQRAEKM 149 (157)
T ss_pred hhHHHHHHHHHHHHhc-----CCCCch---HHHHHHHHHHH-cCCHHHHH----HHHHHHHHHhccChhHHHHHHHHHHH
Confidence 3456788888888754 455553 23455554444 68887765 58888887775444432 2236666
Q ss_pred HHHHHh
Q 025713 213 MQLLRD 218 (249)
Q Consensus 213 lqlLrd 218 (249)
+..|.|
T Consensus 150 L~~l~~ 155 (157)
T PRK15363 150 LQQLSD 155 (157)
T ss_pred HHHhhc
Confidence 666654
No 22
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=51.80 E-value=1.2e+02 Score=27.94 Aligned_cols=91 Identities=18% Similarity=0.229 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHHHHhcC----------CCCCcchhhhhHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhhccCCcccH
Q 025713 137 ADLSMKAYQAASTTAEAEL----------SPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLSEESY 206 (249)
Q Consensus 137 ~~~A~~aY~~A~~~a~~~L----------~pt~pirLgLaLN~SVF~yei~~~~~~A~~iak~afd~Ai~~ld~l~ee~y 206 (249)
+......|.+++....... +.+.-..|-+.+++++|..+ .|..+.|+.+.|..++-..-.-+.+.....
T Consensus 118 v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~-aG~~E~Ava~~Qa~lE~n~~~P~~~~~~~~ 196 (321)
T PF08424_consen 118 VSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQ-AGYTERAVALWQALLEFNFFRPESLSSSSF 196 (321)
T ss_pred HHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHH-CCchHHHHHHHHHHHHHHcCCccccccccH
Confidence 3556777777776664322 23355788899999999999 499999999999888777644333333222
Q ss_pred HhHHHHHHHHHhhHhhhccCCCCCCCch
Q 025713 207 KDSTLIMQLLRDNLTLWTSDIPEDGGDE 234 (249)
Q Consensus 207 ~ds~~ilqlLrdNl~~W~~e~~~~~~~~ 234 (249)
. +.++.=-.-|.++.+--|...
T Consensus 197 ~------~~~~~fe~FWeS~vpRiGE~g 218 (321)
T PF08424_consen 197 S------ERLESFEEFWESEVPRIGEPG 218 (321)
T ss_pred H------HHHHHHHHHhCcCCCCCCCCC
Confidence 1 444445589999877555444
No 23
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=50.65 E-value=1.1e+02 Score=31.94 Aligned_cols=104 Identities=21% Similarity=0.374 Sum_probs=68.4
Q ss_pred heeccccchhhhhccc-chhhHHHHHHHHHHHHHHHHHHHhcCCCCCcchhhhhHHHHHHHHHHhCChHHHHHHHHHHHH
Q 025713 114 YKMKGDYYRYLAEFKT-GDERKDVADLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFD 192 (249)
Q Consensus 114 ~KmkgDyyRY~aE~~~-~~~~~~~~~~A~~aY~~A~~~a~~~L~pt~pirLgLaLN~SVF~yei~~~~~~A~~iak~afd 192 (249)
+++-|=-|-..|--.+ .++|...-.++.++|++|.+ +.|+|| -...+.|++|-+ .++.+.|...++.++.
T Consensus 436 ~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~-----~d~~dp---~~if~lalq~A~-~R~l~sAl~~~~eaL~ 506 (799)
T KOG4162|consen 436 YLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQ-----FDPTDP---LVIFYLALQYAE-QRQLTSALDYAREALA 506 (799)
T ss_pred HHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHh-----cCCCCc---hHHHHHHHHHHH-HHhHHHHHHHHHHHHH
Confidence 4566766766666544 45777788899999999874 568999 234455555444 5888888888777755
Q ss_pred H------------------------HHHhh----ccCCc------------ccHHhHHHHHHHHHhhHhhhccC
Q 025713 193 E------------------------AISEL----DTLSE------------ESYKDSTLIMQLLRDNLTLWTSD 226 (249)
Q Consensus 193 ~------------------------Ai~~l----d~l~e------------e~y~ds~~ilqlLrdNl~~W~~e 226 (249)
- |+.-+ ++-.+ -.+.|....+.+.+--|.+|..+
T Consensus 507 l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~ 580 (799)
T KOG4162|consen 507 LNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAE 580 (799)
T ss_pred hcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhh
Confidence 4 22111 11111 23667777888888889999853
No 24
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=50.45 E-value=17 Score=38.67 Aligned_cols=87 Identities=15% Similarity=0.032 Sum_probs=56.9
Q ss_pred HHHHhccCCCCCCCcchhhhheeccccchhh------hhcccchhhHHHHHHHHHHHHHHHHHHHhcCCCCCcchhhhhH
Q 025713 94 QVIDEHLIPSCTGGESTVFYYKMKGDYYRYL------AEFKTGDERKDVADLSMKAYQAASTTAEAELSPTHPIRLGLAL 167 (249)
Q Consensus 94 ~lid~~Llp~~~~~eskvfy~KmkgDyyRY~------aE~~~~~~~~~~~~~A~~aY~~A~~~a~~~L~pt~pirLgLaL 167 (249)
++++. .|.........||++..|||+.-. |++-. +-.-.++|..+|++++++ .|.||. +|
T Consensus 88 ~~l~~--~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Yd---k~g~~~ka~~~yer~L~~-----D~~n~~----aL 153 (906)
T PRK14720 88 NLIDS--FSQNLKWAIVEHICDKILLYGENKLALRTLAEAYA---KLNENKKLKGVWERLVKA-----DRDNPE----IV 153 (906)
T ss_pred hhhhh--cccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHH---HcCChHHHHHHHHHHHhc-----CcccHH----HH
Confidence 55542 344444456678888888876433 43322 112246788899888754 377774 66
Q ss_pred HHHHHHHHHhCChHHHHHHHHHHHHHHH
Q 025713 168 NFSVFYYEIMNSPERACHLAKQAFDEAI 195 (249)
Q Consensus 168 N~SVF~yei~~~~~~A~~iak~afd~Ai 195 (249)
|+=.|+|.-. +.++|..++++|+.--+
T Consensus 154 Nn~AY~~ae~-dL~KA~~m~~KAV~~~i 180 (906)
T PRK14720 154 KKLATSYEEE-DKEKAITYLKKAIYRFI 180 (906)
T ss_pred HHHHHHHHHh-hHHHHHHHHHHHHHHHH
Confidence 6666666666 99999999999977643
No 25
>cd00520 RRF Ribosome recycling factor (RRF). Ribosome recycling factor dissociates the posttermination complex, composed of the ribosome, deacylated tRNA, and mRNA, after termination of translation. Thus ribosomes are "recycled" and ready for another round of protein synthesis. RRF is believed to bind the ribosome at the A-site in a manner that mimics tRNA, but the specific mechanisms remain unclear. RRF is essential for bacterial growth. It is not necessary for cell growth in archaea or eukaryotes, but is found in mitochondria or chloroplasts of some eukaryotic species.
Probab=50.37 E-value=58 Score=27.74 Aligned_cols=72 Identities=21% Similarity=0.226 Sum_probs=43.9
Q ss_pred CCCCHHHHHHHHHHHHhhhhhhhHHHHHHHhHHhhHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 025713 27 VELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEEARGNELNVKRIKEYRQKVEAELSKISTDIMQVIDEH 99 (249)
Q Consensus 27 ~~Ls~EERnLlSvAyKn~i~~~R~s~R~l~~ieq~~~~~~~~~~~~~i~~yk~ki~~EL~~~C~eii~lid~~ 99 (249)
|++|.|-|.=|....|...-..|.+.|.+..--.+.- +........-++-.++.+++|..+-++.+.-||..
T Consensus 99 P~lT~E~R~~lvK~~k~~~E~~Kv~iRniR~~~~~~l-Kk~~k~~~iseD~~k~~~~~iqkltd~~i~~id~~ 170 (179)
T cd00520 99 PPLTEERRKELVKDAKKIAEEAKVAIRNIRRDANDKI-KKLEKEKEISEDEVKKAEEDLQKLTDEYIKKIDEL 170 (179)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999998843111110 00000000123344455666666666666666654
No 26
>TIGR00496 frr ribosome recycling factor. This model finds only eubacterial proteins. Mitochondrial and/or chloroplast forms might be expected but are not currently known. This protein was previously called ribosome releasing factor. By releasing ribosomes from mRNA at the end of protein biosynthesis, it prevents inappropriate translation from 3-prime regions of the mRNA and frees the ribosome for new rounds of translation. EGAD|53116|YHR038W is part of the frr superfamily.
Probab=50.20 E-value=67 Score=27.38 Aligned_cols=73 Identities=19% Similarity=0.249 Sum_probs=44.6
Q ss_pred CCCCHHHHHHHHHHHHhhhhhhhHHHHHHHhHHhhHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 025713 27 VELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEEARGNELNVKRIKEYRQKVEAELSKISTDIMQVIDEHL 100 (249)
Q Consensus 27 ~~Ls~EERnLlSvAyKn~i~~~R~s~R~l~~ieq~~~~~~~~~~~~~i~~yk~ki~~EL~~~C~eii~lid~~L 100 (249)
|+||.|-|.=|....|...-..|.++|.+..--.+. .+...+....-++-.++++++|..+.++.+.-||..+
T Consensus 94 P~lT~E~RkelvK~~k~~~E~aKv~iRniRr~~~~~-iKk~~k~~~iseD~~k~~~~~iQkltd~~i~~id~~~ 166 (176)
T TIGR00496 94 PPLTEERRKELVKHAKKIAEQAKVAVRNVRRDANDK-VKKLEKDKEISEDEERRLQEEIQKLTDEYIKKIDEIL 166 (176)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999999999999884211100 0000000011234455566666666666666666543
No 27
>PRK00083 frr ribosome recycling factor; Reviewed
Probab=48.43 E-value=74 Score=27.34 Aligned_cols=72 Identities=19% Similarity=0.192 Sum_probs=44.0
Q ss_pred CCCCHHHHHHHHHHHHhhhhhhhHHHHHHHhHHhhHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 025713 27 VELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEEARGNELNVKRIKEYRQKVEAELSKISTDIMQVIDEH 99 (249)
Q Consensus 27 ~~Ls~EERnLlSvAyKn~i~~~R~s~R~l~~ieq~~~~~~~~~~~~~i~~yk~ki~~EL~~~C~eii~lid~~ 99 (249)
|+||.|-|.=|....|...-..|.+.|.+..--.+.- +...+....-++-.++.+++|..+.+..+.-||..
T Consensus 103 P~lT~E~R~elvK~~k~~~E~aKv~iRniRr~~~~~i-Kk~~k~~~iseD~~k~~e~eiQkltd~~i~~id~~ 174 (185)
T PRK00083 103 PPLTEERRKELVKQVKKEAEEAKVAIRNIRRDANDKL-KKLEKDKEISEDELKRAEDEIQKLTDKYIKKIDEL 174 (185)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999999999998853111110 00000001123444556666666666666666654
No 28
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=47.53 E-value=71 Score=25.83 Aligned_cols=49 Identities=14% Similarity=0.047 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcchhhhhHHHHHHHHHHhCChHHHHHHHHHHHH
Q 025713 138 DLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFD 192 (249)
Q Consensus 138 ~~A~~aY~~A~~~a~~~L~pt~pirLgLaLN~SVF~yei~~~~~~A~~iak~afd 192 (249)
+.|...|+.|+.+. |.++.......|.++. |..+|+.++|+...++|+.
T Consensus 52 ~~A~~~~~~al~l~-----~~~~~~~~~~~~lg~~-~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 52 AEALQNYYEAMRLE-----IDPYDRSYILYNIGLI-HTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHHhcc-----ccchhhHHHHHHHHHH-HHHcCCHHHHHHHHHHHHH
Confidence 56888888888763 2333333345566555 4447999999999888874
No 29
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=46.33 E-value=32 Score=34.22 Aligned_cols=54 Identities=17% Similarity=0.141 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCcchhhhhHHHHHHHHHHhCChHHHHHHHHHHHH
Q 025713 137 ADLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFD 192 (249)
Q Consensus 137 ~~~A~~aY~~A~~~a~~~L~pt~pirLgLaLN~SVF~yei~~~~~~A~~iak~afd 192 (249)
.+.|...|++|+.+.. ..++.++..+ ..++.+..+|+-.|+.++|..+.++|+.
T Consensus 483 ~~~A~~~~~~Al~l~p-~~~~~~~~~~-~l~~~a~~~~~~~~~~~eA~~~~~kAl~ 536 (615)
T TIGR00990 483 FDEAIEKFDTAIELEK-ETKPMYMNVL-PLINKALALFQWKQDFIEAENLCEKALI 536 (615)
T ss_pred HHHHHHHHHHHHhcCC-ccccccccHH-HHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 3668888888876653 2333333222 2355566667767888888887777653
No 30
>PRK12794 flaF flagellar biosynthesis regulatory protein FlaF; Reviewed
Probab=45.15 E-value=25 Score=28.29 Aligned_cols=53 Identities=15% Similarity=0.187 Sum_probs=35.9
Q ss_pred HHHHhCChHHHHHHHHHHHHHHHHhhccCCcccHHhHHHHHHHHHhhHhhhcc
Q 025713 173 YYEIMNSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTS 225 (249)
Q Consensus 173 ~yei~~~~~~A~~iak~afd~Ai~~ld~l~ee~y~ds~~ilqlLrdNl~~W~~ 225 (249)
|-+++.....+.++=.++|..+...|....+..-.+....++-|..|-.+|+.
T Consensus 8 Y~~~~~~~~~~Re~E~~~l~~~~~~L~~a~~~~~~~~~~~~~AL~~NrrLWt~ 60 (122)
T PRK12794 8 YARAAQPTRTPRETEYQLLAKATRQLKDAQTNGPDRFAALAEALHFNRKLWSI 60 (122)
T ss_pred HHHHHhhcCChHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHH
Confidence 44455555556666667788887777665544223336778999999999996
No 31
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=41.17 E-value=47 Score=31.20 Aligned_cols=106 Identities=19% Similarity=0.197 Sum_probs=64.9
Q ss_pred hhhhheeccccchhhhhcccchhhHHHHHHHHHHHHHHHHHHHhc-CCCCC------------cchhhhhHHHHHHHHHH
Q 025713 110 TVFYYKMKGDYYRYLAEFKTGDERKDVADLSMKAYQAASTTAEAE-LSPTH------------PIRLGLALNFSVFYYEI 176 (249)
Q Consensus 110 kvfy~KmkgDyyRY~aE~~~~~~~~~~~~~A~~aY~~A~~~a~~~-L~pt~------------pirLgLaLN~SVF~yei 176 (249)
++-+-+.+-|+.+|..++..-.... ...+.|++-..+-+-. ||... .+++.|.---+-.|-+
T Consensus 217 kld~~~~k~Dv~e~es~~rqi~~in----ltide~kelv~~ykgdyl~e~~y~Waedererle~ly~kllgkva~~yle- 291 (361)
T COG3947 217 KLDAGLPKYDVQEYESLARQIEAIN----LTIDELKELVGQYKGDYLPEADYPWAEDERERLEQLYMKLLGKVARAYLE- 291 (361)
T ss_pred EEecCCccccHHHHHHHhhhhhccc----cCHHHHHHHHHHhcCCcCCccccccccchHHHHHHHHHHHHHHHHHHHHH-
Confidence 4555667889999988876433222 2222333333333211 22111 1222222222333344
Q ss_pred hCChHHHHHHHHHHHHHHHHhhccCCcccHHhHHHHHHHHHhhHhhhcc
Q 025713 177 MNSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTS 225 (249)
Q Consensus 177 ~~~~~~A~~iak~afd~Ai~~ld~l~ee~y~ds~~ilqlLrdNl~~W~~ 225 (249)
.|.+..|+++.+.++ .++.|++++++.-+.++-+++||+..=++
T Consensus 292 ~g~~neAi~l~qr~l-----tldpL~e~~nk~lm~~la~~gD~is~~kh 335 (361)
T COG3947 292 AGKPNEAIQLHQRAL-----TLDPLSEQDNKGLMASLATLGDEISAIKH 335 (361)
T ss_pred cCChHHHHHHHHHHh-----hcChhhhHHHHHHHHHHHHhccchhhhhH
Confidence 599999999999876 47889999999999999999999876554
No 32
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=39.97 E-value=1.2e+02 Score=22.04 Aligned_cols=50 Identities=20% Similarity=0.204 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcchhhhhHHHHHHHHHHhCChHHHHHHHHHHHHH
Q 025713 138 DLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDE 193 (249)
Q Consensus 138 ~~A~~aY~~A~~~a~~~L~pt~pirLgLaLN~SVF~yei~~~~~~A~~iak~afd~ 193 (249)
+.|...|+.++. +.|.||......++.+..++. +|+.++|+....++++.
T Consensus 56 ~~A~~~~~~~~~-----~~p~~~~~~~~~~~~~~~~~~-~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 56 ADAAKAFLAVVK-----KYPKSPKAPDALLKLGMSLQE-LGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHHHHHHH-----HCCCCCcccHHHHHHHHHHHH-hCChHHHHHHHHHHHHH
Confidence 457777777764 346776555555565555554 79999999887776665
No 33
>COG4499 Predicted membrane protein [Function unknown]
Probab=39.93 E-value=56 Score=31.57 Aligned_cols=46 Identities=26% Similarity=0.390 Sum_probs=39.3
Q ss_pred hhhhHHHHHHHHHHhCChHHHHHHHHHH-----HHHHHHhhccCCcccHHh
Q 025713 163 LGLALNFSVFYYEIMNSPERACHLAKQA-----FDEAISELDTLSEESYKD 208 (249)
Q Consensus 163 LgLaLN~SVF~yei~~~~~~A~~iak~a-----fd~Ai~~ld~l~ee~y~d 208 (249)
|-|++=|.+|+|-+.--.+.|+.-|.+| +++.|..++.+|.++.+.
T Consensus 231 lvl~li~~~Y~~f~~~p~qeai~~a~~aFL~~nY~qVittLe~ydp~klPk 281 (434)
T COG4499 231 LVLLLIYFTYYYFSNQPKQEAIITANTAFLKNNYDQVITTLENYDPEKLPK 281 (434)
T ss_pred HHHHHHHHHHHHHHcChhHHHHHHHHHHHHhccHHHHhhhcccCChhhCcH
Confidence 4467899999999999999999999999 588999999888776544
No 34
>PRK12793 flaF flagellar biosynthesis regulatory protein FlaF; Reviewed
Probab=39.66 E-value=32 Score=27.47 Aligned_cols=52 Identities=29% Similarity=0.365 Sum_probs=41.5
Q ss_pred HHHHhCChH-HHHHHHHHHHHHHHHhhccCCcccHHhHHHHHHHHHhhHhhhcc
Q 025713 173 YYEIMNSPE-RACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTS 225 (249)
Q Consensus 173 ~yei~~~~~-~A~~iak~afd~Ai~~ld~l~ee~y~ds~~ilqlLrdNl~~W~~ 225 (249)
|-+++.+.. .+.++=.++|..++..|....+..- ++...++-|..|-.+|+.
T Consensus 6 Ya~~~~~s~~~~R~~E~~~l~r~~~~L~~a~~~~~-~~~~~~eAL~~NrrLWt~ 58 (115)
T PRK12793 6 YAEVMEDSVASARERERQAFDRSIDLLEAARAKGA-YSREAIEALYFTRRLWTV 58 (115)
T ss_pred HHHHHHHcccChHHHHHHHHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHH
Confidence 566777666 7778888899999988877665544 677888999999999995
No 35
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=38.14 E-value=1.3e+02 Score=24.46 Aligned_cols=50 Identities=18% Similarity=0.225 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcchhhhhHHHHHHHHHHhCChHHHHHHHHHHHHH
Q 025713 138 DLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDE 193 (249)
Q Consensus 138 ~~A~~aY~~A~~~a~~~L~pt~pirLgLaLN~SVF~yei~~~~~~A~~iak~afd~ 193 (249)
+.|...|++|+.+.. .+|-..-...|.++-++. +|+.++|+...++|+..
T Consensus 52 ~~A~~~~~~al~~~~-----~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~ 101 (172)
T PRK02603 52 AEALENYEEALKLEE-----DPNDRSYILYNMGIIYAS-NGEHDKALEYYHQALEL 101 (172)
T ss_pred HHHHHHHHHHHHHhh-----ccchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHh
Confidence 568888988887642 222223345666665555 79999999988877663
No 36
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=36.99 E-value=1.6e+02 Score=23.24 Aligned_cols=50 Identities=18% Similarity=0.200 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcchhhhhHHHHHHHHHHhCChHHHHHHHHHHHHH
Q 025713 138 DLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDE 193 (249)
Q Consensus 138 ~~A~~aY~~A~~~a~~~L~pt~pirLgLaLN~SVF~yei~~~~~~A~~iak~afd~ 193 (249)
+.|...|++|+.. .|+ .|.|-+..++.+--+- .+|++++|+.+-++++.+
T Consensus 18 ~~Ai~~Y~~Al~~---gL~--~~~~~~a~i~lastlr-~LG~~deA~~~L~~~~~~ 67 (120)
T PF12688_consen 18 EEAIPLYRRALAA---GLS--GADRRRALIQLASTLR-NLGRYDEALALLEEALEE 67 (120)
T ss_pred HHHHHHHHHHHHc---CCC--chHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHH
Confidence 6799999999752 344 4555555666655544 589999999999888754
No 37
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=33.51 E-value=2.1e+02 Score=24.83 Aligned_cols=79 Identities=27% Similarity=0.373 Sum_probs=45.3
Q ss_pred hhhcccchhhHHHHHHHHHHHHHHHHHHHhcCCCCCc---chhhhhHHHHHHHHHHhCChHHH---HHHHHHHHHHHHHh
Q 025713 124 LAEFKTGDERKDVADLSMKAYQAASTTAEAELSPTHP---IRLGLALNFSVFYYEIMNSPERA---CHLAKQAFDEAISE 197 (249)
Q Consensus 124 ~aE~~~~~~~~~~~~~A~~aY~~A~~~a~~~L~pt~p---irLgLaLN~SVF~yei~~~~~~A---~~iak~afd~Ai~~ 197 (249)
++-|.++.+.++..+.|..-|++|+.+- |..+ .-||.|+--=-|+. .+..+| .+.|...|+.|...
T Consensus 38 LAqfk~g~es~~miedAisK~eeAL~I~-----P~~hdAlw~lGnA~ts~A~l~---~d~~~A~~~F~kA~~~FqkAv~~ 109 (186)
T PF06552_consen 38 LAQFKQGPESKKMIEDAISKFEEALKIN-----PNKHDALWCLGNAYTSLAFLT---PDTAEAEEYFEKATEYFQKAVDE 109 (186)
T ss_dssp HHHHS-HHHHHHHHHHHHHHHHHHHHH------TT-HHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCcchHHHHHHHHHHHHHHHHhcC-----CchHHHHHHHHHHHHHHHhhc---CChHHHHHHHHHHHHHHHHHHhc
Confidence 4556677777788888888888888664 3322 45666665555543 444444 44566668888754
Q ss_pred hccCCcccHHhHHHH
Q 025713 198 LDTLSEESYKDSTLI 212 (249)
Q Consensus 198 ld~l~ee~y~ds~~i 212 (249)
.-+.+.|+-+..+
T Consensus 110 --~P~ne~Y~ksLe~ 122 (186)
T PF06552_consen 110 --DPNNELYRKSLEM 122 (186)
T ss_dssp ---TT-HHHHHHHHH
T ss_pred --CCCcHHHHHHHHH
Confidence 2344567765443
No 38
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=33.33 E-value=65 Score=22.85 Aligned_cols=12 Identities=17% Similarity=0.138 Sum_probs=6.0
Q ss_pred hCChHHHHHHHH
Q 025713 177 MNSPERACHLAK 188 (249)
Q Consensus 177 ~~~~~~A~~iak 188 (249)
+|+.++|+..-+
T Consensus 71 l~~y~eAi~~l~ 82 (84)
T PF12895_consen 71 LGKYEEAIKALE 82 (84)
T ss_dssp TT-HHHHHHHHH
T ss_pred hCCHHHHHHHHh
Confidence 566666655443
No 39
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=32.34 E-value=54 Score=20.87 Aligned_cols=37 Identities=27% Similarity=0.432 Sum_probs=26.6
Q ss_pred ccchhhhhcccchhhHHHHHHHHHHHHHHHHHHHhcCCCC
Q 025713 119 DYYRYLAEFKTGDERKDVADLSMKAYQAASTTAEAELSPT 158 (249)
Q Consensus 119 DyyRY~aE~~~~~~~~~~~~~A~~aY~~A~~~a~~~L~pt 158 (249)
|.|--++|+.-..++- +.|.+=|++|+++=++.+||.
T Consensus 2 dv~~~Lgeisle~e~f---~qA~~D~~~aL~i~~~l~~~~ 38 (38)
T PF10516_consen 2 DVYDLLGEISLENENF---EQAIEDYEKALEIQEELLPPE 38 (38)
T ss_pred cHHHHHHHHHHHhccH---HHHHHHHHHHHHHHHHhcCCC
Confidence 4555667776555443 678888999999988878774
No 40
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=32.25 E-value=84 Score=20.62 Aligned_cols=40 Identities=23% Similarity=0.354 Sum_probs=26.5
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHHHHHHHhhccCCcccHHhHHHHHH
Q 025713 167 LNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQ 214 (249)
Q Consensus 167 LN~SVF~yei~~~~~~A~~iak~afd~Ai~~ld~l~ee~y~ds~~ilq 214 (249)
|+.+.=|.+ +|+.+.|..+..+.+.+ -+.+...++..+++
T Consensus 3 LdLA~ayie-~Gd~e~Ar~lL~evl~~-------~~~~q~~eA~~LL~ 42 (44)
T TIGR03504 3 LDLARAYIE-MGDLEGARELLEEVIEE-------GDEAQRQEARALLA 42 (44)
T ss_pred hHHHHHHHH-cCChHHHHHHHHHHHHc-------CCHHHHHHHHHHHh
Confidence 455555666 69999999998877642 23445556666654
No 41
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=32.08 E-value=1.4e+02 Score=27.79 Aligned_cols=23 Identities=9% Similarity=0.024 Sum_probs=11.0
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHH
Q 025713 167 LNFSVFYYEIMNSPERACHLAKQA 190 (249)
Q Consensus 167 LN~SVF~yei~~~~~~A~~iak~a 190 (249)
++.++.++. +|+.+.|+...++|
T Consensus 74 ~~lg~~~~~-lg~~~eA~~~~~~a 96 (356)
T PLN03088 74 LRKGTACMK-LEEYQTAKAALEKG 96 (356)
T ss_pred HHHHHHHHH-hCCHHHHHHHHHHH
Confidence 333433333 46666666544443
No 42
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=31.66 E-value=1.9e+02 Score=23.07 Aligned_cols=47 Identities=21% Similarity=0.263 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCcchhhhhHHHHHHHHHHhCChHHHHHHHHHHHH
Q 025713 137 ADLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFD 192 (249)
Q Consensus 137 ~~~A~~aY~~A~~~a~~~L~pt~pirLgLaLN~SVF~yei~~~~~~A~~iak~afd 192 (249)
.+.|..+|+.|+. +.|.||- ...|.++ .+..+|++++|+.....|+.
T Consensus 74 ~~~A~~~y~~Al~-----l~p~~~~---a~~~lg~-~l~~~g~~~eAi~~~~~Al~ 120 (144)
T PRK15359 74 YTTAINFYGHALM-----LDASHPE---PVYQTGV-CLKMMGEPGLAREAFQTAIK 120 (144)
T ss_pred HHHHHHHHHHHHh-----cCCCCcH---HHHHHHH-HHHHcCCHHHHHHHHHHHHH
Confidence 4668888888874 4455552 1222222 23358999999887766654
No 43
>PRK15331 chaperone protein SicA; Provisional
Probab=29.65 E-value=2.6e+02 Score=23.76 Aligned_cols=70 Identities=14% Similarity=0.114 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCcchhhhhHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhhccCCcccHHhHHHHHHHH
Q 025713 137 ADLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLL 216 (249)
Q Consensus 137 ~~~A~~aY~~A~~~a~~~L~pt~pirLgLaLN~SVF~yei~~~~~~A~~iak~afd~Ai~~ld~l~ee~y~ds~~ilqlL 216 (249)
-++|..+|--|.-+... .|.-|.+.| -.|=.+|++.+|.. +|.-|+..-. ...-..-+...+..|
T Consensus 87 y~~Ai~~Y~~A~~l~~~--dp~p~f~ag-------qC~l~l~~~~~A~~----~f~~a~~~~~--~~~l~~~A~~~L~~l 151 (165)
T PRK15331 87 FQKACDLYAVAFTLLKN--DYRPVFFTG-------QCQLLMRKAAKARQ----CFELVNERTE--DESLRAKALVYLEAL 151 (165)
T ss_pred HHHHHHHHHHHHHcccC--CCCccchHH-------HHHHHhCCHHHHHH----HHHHHHhCcc--hHHHHHHHHHHHHHH
Confidence 35566666666655532 233344444 34556899988876 7777776321 111233366667766
Q ss_pred HhhHh
Q 025713 217 RDNLT 221 (249)
Q Consensus 217 rdNl~ 221 (249)
..|..
T Consensus 152 ~~~~~ 156 (165)
T PRK15331 152 KTAET 156 (165)
T ss_pred Hcccc
Confidence 66643
No 44
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=29.55 E-value=1.7e+02 Score=19.33 Aligned_cols=46 Identities=15% Similarity=0.184 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcchhhhhHHHHHHHHHHhCChHHHHHHHHHHHH
Q 025713 138 DLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFD 192 (249)
Q Consensus 138 ~~A~~aY~~A~~~a~~~L~pt~pirLgLaLN~SVF~yei~~~~~~A~~iak~afd 192 (249)
+.|...|++++ ..+|-.--.-+..+..++. .|++++|+..-+++++
T Consensus 14 ~~A~~~~~~~l--------~~~P~~~~a~~~lg~~~~~-~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 14 DEAIAAFEQAL--------KQDPDNPEAWYLLGRILYQ-QGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHHHHHH--------CCSTTHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--------HHCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHH
Confidence 34555555544 2335566666677777774 7999999977766653
No 45
>KOG1107 consensus Membrane coat complex Retromer, subunit VPS35 [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.22 E-value=1.5e+02 Score=30.82 Aligned_cols=43 Identities=19% Similarity=0.251 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCcchh-hhhHHHHHHHHHHhCC
Q 025713 137 ADLSMKAYQAASTTAEAELSPTHPIRL-GLALNFSVFYYEIMNS 179 (249)
Q Consensus 137 ~~~A~~aY~~A~~~a~~~L~pt~pirL-gLaLN~SVF~yei~~~ 179 (249)
-++..+|+++|+.+|.+.+.|+-++-| -=+||--.|+||--++
T Consensus 656 GkRVleCLkkAlkIA~qcmd~~~~vqLFIEILnrYiYfyek~n~ 699 (760)
T KOG1107|consen 656 GKRVLECLKKALKIAQQCMDNLRQVQLFIEILNRYIYFYEKGND 699 (760)
T ss_pred hHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhhhhcCCC
Confidence 467899999999999999999988777 4578988899986443
No 46
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=28.09 E-value=1.8e+02 Score=28.94 Aligned_cols=61 Identities=16% Similarity=0.192 Sum_probs=36.1
Q ss_pred CCCCCcchhhhhHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhhccCCcccHHhHHHHHHHHHhh
Q 025713 155 LSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDN 219 (249)
Q Consensus 155 L~pt~pirLgLaLN~SVF~yei~~~~~~A~~iak~afd~Ai~~ld~l~ee~y~ds~~ilqlLrdN 219 (249)
+.|.++. ..++.+-.+ .-+|+.++|+....+|..-+-+.-+-+.--+|..++.+-..++.+
T Consensus 537 l~p~~~~---a~~~la~~~-~~~g~~~eAi~~~e~A~~l~~~~~e~~~a~~~~~a~~~~~~~~~~ 597 (615)
T TIGR00990 537 IDPECDI---AVATMAQLL-LQQGDVDEALKLFERAAELARTEGELVQAISYAEATRTQIQVQED 597 (615)
T ss_pred cCCCcHH---HHHHHHHHH-HHccCHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566553 223334444 447999999998888876665433222333566777775555554
No 47
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=27.67 E-value=3.3e+02 Score=22.00 Aligned_cols=13 Identities=23% Similarity=0.340 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHH
Q 025713 138 DLSMKAYQAASTT 150 (249)
Q Consensus 138 ~~A~~aY~~A~~~ 150 (249)
+.|..+|++|+.+
T Consensus 89 ~~A~~~~~~al~~ 101 (172)
T PRK02603 89 DKALEYYHQALEL 101 (172)
T ss_pred HHHHHHHHHHHHh
Confidence 5688888888865
No 48
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=27.59 E-value=1.3e+02 Score=32.38 Aligned_cols=51 Identities=22% Similarity=0.313 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHh--cCCCCCcchhhhhHHHHHHHHHHhCChHHHHHHHHHHHHHHHH
Q 025713 142 KAYQAASTTAEA--ELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAIS 196 (249)
Q Consensus 142 ~aY~~A~~~a~~--~L~pt~pirLgLaLN~SVF~yei~~~~~~A~~iak~afd~Ai~ 196 (249)
++|+.|+.+-.. ...|.||.-|...-||=+| -|+.+.++.+|-.||..+..
T Consensus 250 ~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyf----K~dy~~v~~la~~ai~~t~~ 302 (1018)
T KOG2002|consen 250 DSYKKGVQLLQRAYKENNENPVALNHLANHFYF----KKDYERVWHLAEHAIKNTEN 302 (1018)
T ss_pred HHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhh----cccHHHHHHHHHHHHHhhhh
Confidence 667777776643 6889999988887776554 69999999999999988843
No 49
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=26.89 E-value=2.4e+02 Score=21.25 Aligned_cols=47 Identities=17% Similarity=0.219 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcchhhhhHHHHHHHHHHhCChHHHHHHHHHHHHH
Q 025713 138 DLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDE 193 (249)
Q Consensus 138 ~~A~~aY~~A~~~a~~~L~pt~pirLgLaLN~SVF~yei~~~~~~A~~iak~afd~ 193 (249)
..|...|++++.+ .|.+ .....+.+..++ ..|+.++|+..-+.++.-
T Consensus 68 ~~A~~~~~~~~~~-----~p~~---~~~~~~la~~~~-~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 68 EEAIDAYALAAAL-----DPDD---PRPYFHAAECLL-ALGEPESALKALDLAIEI 114 (135)
T ss_pred HHHHHHHHHHHhc-----CCCC---hHHHHHHHHHHH-HcCCHHHHHHHHHHHHHh
Confidence 4567777776643 3443 344466666544 579999999977766653
No 50
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=26.23 E-value=2.4e+02 Score=22.36 Aligned_cols=15 Identities=13% Similarity=0.149 Sum_probs=6.7
Q ss_pred hCChHHHHHHHHHHH
Q 025713 177 MNSPERACHLAKQAF 191 (249)
Q Consensus 177 ~~~~~~A~~iak~af 191 (249)
.|+.++|.....+++
T Consensus 148 ~g~~~~A~~~~~~~~ 162 (234)
T TIGR02521 148 AGDFDKAEKYLTRAL 162 (234)
T ss_pred cCCHHHHHHHHHHHH
Confidence 344444444444443
No 51
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=26.11 E-value=2e+02 Score=25.43 Aligned_cols=36 Identities=22% Similarity=0.293 Sum_probs=22.5
Q ss_pred HHHHHHHHHHhhccCCccc-HHhHHHHHHHHHhhHhh
Q 025713 187 AKQAFDEAISELDTLSEES-YKDSTLIMQLLRDNLTL 222 (249)
Q Consensus 187 ak~afd~Ai~~ld~l~ee~-y~ds~~ilqlLrdNl~~ 222 (249)
++.||+.--.-++.-++.. .+|+...|..||+-|..
T Consensus 140 ~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~ 176 (243)
T PRK10866 140 ARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAK 176 (243)
T ss_pred HHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHH
Confidence 3444444433444456655 45799999999988753
No 52
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=25.85 E-value=2.3e+02 Score=22.55 Aligned_cols=29 Identities=14% Similarity=0.122 Sum_probs=19.4
Q ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHHH
Q 025713 164 GLALNFSVFYYEIMNSPERACHLAKQAFDE 193 (249)
Q Consensus 164 gLaLN~SVF~yei~~~~~~A~~iak~afd~ 193 (249)
....+.+..++. .|+.++|+...+++.+.
T Consensus 170 ~~~~~la~~~~~-~~~~~~A~~~~~~~~~~ 198 (234)
T TIGR02521 170 ESLLELAELYYL-RGQYKDARAYLERYQQT 198 (234)
T ss_pred HHHHHHHHHHHH-cCCHHHHHHHHHHHHHh
Confidence 344556655555 79999998877766553
No 53
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=25.77 E-value=2e+02 Score=24.43 Aligned_cols=48 Identities=15% Similarity=0.160 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcchhhhhHHHHHHHHHHhCC--hHHHHHHHHHHHHH
Q 025713 138 DLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNS--PERACHLAKQAFDE 193 (249)
Q Consensus 138 ~~A~~aY~~A~~~a~~~L~pt~pirLgLaLN~SVF~yei~~~--~~~A~~iak~afd~ 193 (249)
+.|..+|++|+.+. |.+ ..+.++++.-+|...|+ .++|..+..+|+..
T Consensus 90 ~~A~~a~~~Al~l~-----P~~---~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~ 139 (198)
T PRK10370 90 DNALLAYRQALQLR-----GEN---AELYAALATVLYYQAGQHMTPQTREMIDKALAL 139 (198)
T ss_pred HHHHHHHHHHHHhC-----CCC---HHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh
Confidence 45777777776433 333 33345556544444555 46777766666443
No 54
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=24.74 E-value=4.7e+02 Score=22.74 Aligned_cols=60 Identities=15% Similarity=0.232 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCcchhhhhHHHHHHHHHHhCChHHHHHHHHHH---HHHHHHhh
Q 025713 137 ADLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQA---FDEAISEL 198 (249)
Q Consensus 137 ~~~A~~aY~~A~~~a~~~L~pt~pirLgLaLN~SVF~yei~~~~~~A~~iak~a---fd~Ai~~l 198 (249)
.+.|.++|.-|+-.+. +...+|..+|...=-...+|.-+|+.+.....-++| |.+|+..-
T Consensus 93 ~~~ai~~YkLAll~~~--~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e 155 (214)
T PF09986_consen 93 LEEAIESYKLALLCAQ--IKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENE 155 (214)
T ss_pred HHHHHHHHHHHHHHHH--HhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhC
Confidence 5789999999998874 444556566655555667888899977666666665 55565443
No 55
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=23.89 E-value=2.8e+02 Score=19.93 Aligned_cols=49 Identities=14% Similarity=0.100 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcchhhhhHHHHHHHHHHhCChHHHHHHHHHHHH
Q 025713 138 DLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFD 192 (249)
Q Consensus 138 ~~A~~aY~~A~~~a~~~L~pt~pirLgLaLN~SVF~yei~~~~~~A~~iak~afd 192 (249)
+.|...|+++... .|.+|...-..++.+..++. .|+.+.|+...+.+..
T Consensus 19 ~~A~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~ 67 (119)
T TIGR02795 19 ADAIQAFQAFLKK-----YPKSTYAPNAHYWLGEAYYA-QGKYADAAKAFLAVVK 67 (119)
T ss_pred HHHHHHHHHHHHH-----CCCccccHHHHHHHHHHHHh-hccHHHHHHHHHHHHH
Confidence 4566666666532 35555444445566666555 6999999998887764
No 56
>PHA02103 hypothetical protein
Probab=22.88 E-value=26 Score=27.85 Aligned_cols=14 Identities=50% Similarity=0.890 Sum_probs=11.1
Q ss_pred ccccchhhhhcccc
Q 025713 117 KGDYYRYLAEFKTG 130 (249)
Q Consensus 117 kgDyyRY~aE~~~~ 130 (249)
.-|||||.+|-..+
T Consensus 78 ipdyyryf~ee~e~ 91 (135)
T PHA02103 78 IPDYYRYFGEEAEG 91 (135)
T ss_pred ChHHHHHhcccchh
Confidence 46999999986654
No 57
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=22.61 E-value=5.5e+02 Score=22.82 Aligned_cols=88 Identities=22% Similarity=0.298 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcchhh-hhHHHHHHHHHHhCChHHHHHHHHHHHHHHH--HhhccCCcccHHhHHHHHH
Q 025713 138 DLSMKAYQAASTTAEAELSPTHPIRLG-LALNFSVFYYEIMNSPERACHLAKQAFDEAI--SELDTLSEESYKDSTLIMQ 214 (249)
Q Consensus 138 ~~A~~aY~~A~~~a~~~L~pt~pirLg-LaLN~SVF~yei~~~~~~A~~iak~afd~Ai--~~ld~l~ee~y~ds~~ilq 214 (249)
+.|.-.|.+|-.+.. .++|....+|. +.+|+.+-.+..-.+.+.|+..-++|++-.- ..++..+.+...==..|++
T Consensus 10 ~~A~~~~~K~~~~~~-~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~ 88 (278)
T PF08631_consen 10 DLAEHMYSKAKDLLN-SLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILR 88 (278)
T ss_pred HHHHHHHHHhhhHHh-cCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHH
Confidence 568888888888775 78899999998 7889999999964499999999999987632 2333333332222456777
Q ss_pred HHHhhHhhhccC
Q 025713 215 LLRDNLTLWTSD 226 (249)
Q Consensus 215 lLrdNl~~W~~e 226 (249)
+|-...-.|...
T Consensus 89 ~La~~~l~~~~~ 100 (278)
T PF08631_consen 89 LLANAYLEWDTY 100 (278)
T ss_pred HHHHHHHcCCCh
Confidence 777777777653
No 58
>PF03755 YicC_N: YicC-like family, N-terminal region ; InterPro: IPR013527 Proteins in this entry are homologues of YicC (P23839 from SWISSPROT) from Escherichia coli. Although it is relatively poorly characterised YicC has been shown to be important for cells in the stationary phase, and essential for growth at high temperatures []. This domain is found at the N-terminal region of these proteins.
Probab=22.13 E-value=1.9e+02 Score=23.82 Aligned_cols=63 Identities=29% Similarity=0.277 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcchhhhhHHHH-HHHHHHhCC---hHHHHHHHHHHHHHHHHhhcc
Q 025713 138 DLSMKAYQAASTTAEAELSPTHPIRLGLALNFS-VFYYEIMNS---PERACHLAKQAFDEAISELDT 200 (249)
Q Consensus 138 ~~A~~aY~~A~~~a~~~L~pt~pirLgLaLN~S-VF~yei~~~---~~~A~~iak~afd~Ai~~ld~ 200 (249)
.....+|-+++.-....++...|+.+...|.+. ||.-+--.+ .+..-.....++++|+..+..
T Consensus 81 ~~l~~~y~~~l~~l~~~~~~~~~~~~~~ll~~p~v~~~~~~~~~~~~e~~~~~l~~~l~~AL~~l~~ 147 (159)
T PF03755_consen 81 EELAKAYYEALKELAEELGLAGPISLDDLLRLPGVLKVEEEEDEEEEEELWEALLEALEEALDELIA 147 (159)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCHHHHHcCCCcccccCCCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777666666778888899999999886 443122112 233457788999999988754
No 59
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=21.91 E-value=1.6e+02 Score=16.35 Aligned_cols=25 Identities=12% Similarity=0.319 Sum_probs=16.8
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHHH
Q 025713 167 LNFSVFYYEIMNSPERACHLAKQAFD 192 (249)
Q Consensus 167 LN~SVF~yei~~~~~~A~~iak~afd 192 (249)
++.+.-++. +|+.++|+..-++.++
T Consensus 4 ~~~a~~~~~-~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 4 YRLARCYYK-LGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHH-HCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-ccCHHHHHHHHHHHHH
Confidence 344555555 7999999887666554
No 60
>PF08717 nsp8: nsp8 replicase; InterPro: IPR014829 Viral Nsp8 (non structural protein 8) forms a hexadecameric supercomplex with Nsp7 that adopts a hollow cylinder-like structure []. The dimensions of the central channel and positive electrostatic properties of the cylinder imply that it confers processivity on RNA-dependent RNA polymerase []. ; GO: 0004197 cysteine-type endopeptidase activity, 0008242 omega peptidase activity, 0016740 transferase activity; PDB: 2AHM_F 3UB0_D.
Probab=21.69 E-value=1e+02 Score=26.81 Aligned_cols=38 Identities=24% Similarity=0.452 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCcchhhhhHHHHHHHHHHhCChHHHHHHHHHHHHHH
Q 025713 137 ADLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEA 194 (249)
Q Consensus 137 ~~~A~~aY~~A~~~a~~~L~pt~pirLgLaLN~SVF~yei~~~~~~A~~iak~afd~A 194 (249)
-+.|.++|++|..-- ..| ..++...+|+.|||..||.=
T Consensus 15 Ye~A~~~Ye~av~ng------~~~--------------q~~Kql~KA~NIAKse~drd 52 (199)
T PF08717_consen 15 YETARQAYEEAVANG------SSP--------------QELKQLKKAMNIAKSEFDRD 52 (199)
T ss_dssp HHHHHHHHHHHHHCT--------H--------------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC------CCH--------------HHHHHHHHHHhHHHHHHhHH
Confidence 478999999997511 112 12577889999999999863
No 61
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.28 E-value=1e+02 Score=30.91 Aligned_cols=45 Identities=27% Similarity=0.325 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcchhhhhHHHHHHHHHHhCChHHHHHHHHHHH
Q 025713 138 DLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAF 191 (249)
Q Consensus 138 ~~A~~aY~~A~~~a~~~L~pt~pirLgLaLN~SVF~yei~~~~~~A~~iak~af 191 (249)
+.|.++|.+|++++ |+.||. .-|-|. .|+.+|+.++-++.+.+|+
T Consensus 132 ~eAIkyY~~AI~l~-----p~epiF---YsNraA-cY~~lgd~~~Vied~TkAL 176 (606)
T KOG0547|consen 132 DEAIKYYTQAIELC-----PDEPIF---YSNRAA-CYESLGDWEKVIEDCTKAL 176 (606)
T ss_pred HHHHHHHHHHHhcC-----CCCchh---hhhHHH-HHHHHhhHHHHHHHHHHHh
Confidence 67999999998665 455654 345554 4788899998888887774
No 62
>PRK15326 type III secretion system needle complex protein PrgI; Provisional
Probab=21.25 E-value=1.7e+02 Score=22.00 Aligned_cols=35 Identities=14% Similarity=0.200 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCcchhh----hhHHHHHHH
Q 025713 137 ADLSMKAYQAASTTAEAELSPTHPIRLG----LALNFSVFY 173 (249)
Q Consensus 137 ~~~A~~aY~~A~~~a~~~L~pt~pirLg----LaLN~SVF~ 173 (249)
+....+.-+.|++-- +..|.||..|+ +.-+|++|+
T Consensus 20 a~~~~~~l~~Al~~l--~~~pdnP~~LA~~Qa~l~eyn~~R 58 (80)
T PRK15326 20 VDNLQTQVTEALDKL--AAKPSDPALLAAYQSKLSEYNLYR 58 (80)
T ss_pred HHHHHHHHHHHHHHh--hcCCCCHHHHHHHHHHHHHHHHHH
Confidence 344455555555433 58999999997 566777763
No 63
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=20.92 E-value=2.9e+02 Score=25.13 Aligned_cols=72 Identities=26% Similarity=0.391 Sum_probs=43.9
Q ss_pred HHHHHHHHHh--cCCCCCc------chhhhhHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhhccCCcccH-HhHHHHHH
Q 025713 144 YQAASTTAEA--ELSPTHP------IRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLSEESY-KDSTLIMQ 214 (249)
Q Consensus 144 Y~~A~~~a~~--~L~pt~p------irLgLaLN~SVF~yei~~~~~~A~~iak~afd~Ai~~ld~l~ee~y-~ds~~ilq 214 (249)
|..|+..+.. .+-|+|| --.||+ +|....++.+=-.-+++||++.-.-+...+..-| .|+..-|.
T Consensus 87 y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs------~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~ 160 (254)
T COG4105 87 YDLALAYIDRFIRLYPTHPNADYAYYLKGLS------YFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIV 160 (254)
T ss_pred HHHHHHHHHHHHHhCCCCCChhHHHHHHHHH------HhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHH
Confidence 4566666653 6889999 234555 4444455554444445555544444455566665 47999999
Q ss_pred HHHhhHh
Q 025713 215 LLRDNLT 221 (249)
Q Consensus 215 lLrdNl~ 221 (249)
.++|-|.
T Consensus 161 ~~~d~LA 167 (254)
T COG4105 161 KLNDALA 167 (254)
T ss_pred HHHHHHH
Confidence 9998764
No 64
>PF11568 Med29: Mediator complex subunit 29; InterPro: IPR021018 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med29, along with Med11 and Med28, in mammals, is part of the core head-region of the complex. Med29 is the apparent orthologue of the Drosophila melanogaster Intersex protein, which interacts directly with, and functions as a transcriptional coactivator for, the DNA-binding transcription factor Doublesex, so it is likely that mammalian Med29 serves as a target for one or more DNA-binding transcriptional activators []. ; GO: 0016592 mediator complex
Probab=20.34 E-value=2.5e+02 Score=23.43 Aligned_cols=49 Identities=18% Similarity=0.361 Sum_probs=28.8
Q ss_pred HHhhhhhhhHHHHHHHh-----HHhh------HhhhcchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 025713 41 YKNVIGARRASWRILSS-----IEQK------EEARGNELNVKRIKEYRQKVEAELSKISTDIM 93 (249)
Q Consensus 41 yKn~i~~~R~s~R~l~~-----ieq~------~~~~~~~~~~~~i~~yk~ki~~EL~~~C~eii 93 (249)
+|++|++.|.||..+.. +.|+ ...++.+.. ..+|.+.+ +|...+|+.|=
T Consensus 10 vK~Lv~~LreSl~~~~k~AA~~l~qn~~~D~g~~~~~~d~~---~~RFdK~l-EeFysiCDQIE 69 (148)
T PF11568_consen 10 VKSLVGPLRESLSNLMKTAAQNLQQNSLVDNGTRGKSSDEP---VPRFDKNL-EEFYSICDQIE 69 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCc---HHHHHHHH-HHHHHHHHHHH
Confidence 68999999999987742 4444 111222221 23444443 56888887764
No 65
>PF07309 FlaF: Flagellar protein FlaF; InterPro: IPR010845 This family consists of several bacterial FlaF flagellar proteins. FlaF and FlaG are trans-acting, regulatory factors that modulate flagellin synthesis during flagellum biogenesis [].
Probab=20.00 E-value=1e+02 Score=24.35 Aligned_cols=45 Identities=22% Similarity=0.296 Sum_probs=27.3
Q ss_pred hHHHHHHHHHHHHHHHHhhccCCcccHHhHHHHHHHHHhhHhhhcc
Q 025713 180 PERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTS 225 (249)
Q Consensus 180 ~~~A~~iak~afd~Ai~~ld~l~ee~y~ds~~ilqlLrdNl~~W~~ 225 (249)
...+.++=..+|..+...|....+..-. +..-++-|..|..+|+.
T Consensus 13 ~~~~Re~E~~~l~~a~~~L~~A~~~~~~-~~~~~~AL~~N~rLW~~ 57 (113)
T PF07309_consen 13 TRSPREIEARALARAARRLERAREAGPR-SREALEALHFNRRLWTI 57 (113)
T ss_pred cCChHHHHHHHHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHH
Confidence 3344455556677777766655422212 22333999999999996
Done!