Query 025714
Match_columns 249
No_of_seqs 226 out of 1382
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 08:44:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025714.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025714hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0037 Ca2+-binding protein, 100.0 5.9E-33 1.3E-37 215.1 24.3 165 75-243 55-220 (221)
2 COG5126 FRQ1 Ca2+-binding prot 99.9 1.9E-26 4.1E-31 173.9 14.9 139 67-210 10-155 (160)
3 KOG0027 Calmodulin and related 99.9 5.4E-25 1.2E-29 168.5 15.6 136 71-210 2-148 (151)
4 KOG0030 Myosin essential light 99.9 2E-22 4.3E-27 145.3 13.0 137 69-210 3-150 (152)
5 KOG0028 Ca2+-binding protein ( 99.9 4.2E-22 9E-27 147.1 14.7 137 70-210 26-169 (172)
6 KOG0031 Myosin regulatory ligh 99.9 9.7E-22 2.1E-26 144.1 13.0 135 68-210 23-164 (171)
7 PTZ00183 centrin; Provisional 99.9 2.4E-21 5.2E-26 149.1 15.9 140 68-211 8-154 (158)
8 PTZ00184 calmodulin; Provision 99.9 4E-21 8.6E-26 146.3 15.1 138 70-211 4-148 (149)
9 KOG0034 Ca2+/calmodulin-depend 99.8 1.6E-17 3.5E-22 129.7 13.2 142 69-218 25-182 (187)
10 KOG0044 Ca2+ sensor (EF-Hand s 99.7 4.6E-17 1E-21 127.2 13.8 149 71-223 20-187 (193)
11 KOG0036 Predicted mitochondria 99.7 9.9E-16 2.1E-20 129.2 14.3 158 70-231 7-174 (463)
12 KOG0037 Ca2+-binding protein, 99.6 7.9E-15 1.7E-19 114.4 10.5 90 78-168 125-216 (221)
13 KOG0027 Calmodulin and related 99.5 7.6E-13 1.7E-17 101.2 14.3 125 112-242 7-148 (151)
14 PTZ00183 centrin; Provisional 99.5 1.2E-12 2.5E-17 100.6 15.4 125 113-243 17-154 (158)
15 PLN02964 phosphatidylserine de 99.5 4.2E-13 9E-18 122.4 12.0 114 69-187 135-272 (644)
16 KOG0044 Ca2+ sensor (EF-Hand s 99.5 4E-12 8.7E-17 99.5 15.5 142 93-242 8-174 (193)
17 PTZ00184 calmodulin; Provision 99.5 3.6E-12 7.9E-17 96.7 14.9 124 113-242 11-147 (149)
18 COG5126 FRQ1 Ca2+-binding prot 99.4 8.5E-12 1.8E-16 94.5 14.6 122 114-242 21-155 (160)
19 cd05022 S-100A13 S-100A13: S-1 99.4 1.8E-12 3.8E-17 89.5 7.7 69 142-213 6-77 (89)
20 KOG4223 Reticulocalbin, calume 99.4 3.8E-12 8.3E-17 104.9 10.9 163 75-243 75-269 (325)
21 KOG0028 Ca2+-binding protein ( 99.3 1.5E-10 3.3E-15 86.1 13.6 124 113-242 33-169 (172)
22 cd05027 S-100B S-100B: S-100B 99.3 3.1E-11 6.8E-16 83.3 8.6 67 143-212 7-80 (88)
23 PF13499 EF-hand_7: EF-hand do 99.3 2.2E-11 4.9E-16 79.6 7.5 62 145-209 1-66 (66)
24 KOG4223 Reticulocalbin, calume 99.3 2.3E-11 4.9E-16 100.4 8.9 128 76-207 162-301 (325)
25 cd05022 S-100A13 S-100A13: S-1 99.2 2.8E-11 6.1E-16 83.5 7.1 68 75-143 6-76 (89)
26 KOG2643 Ca2+ binding protein, 99.2 4.6E-11 1E-15 101.9 9.0 160 76-242 232-452 (489)
27 KOG0377 Protein serine/threoni 99.2 1.9E-10 4E-15 98.4 12.5 125 78-208 465-612 (631)
28 KOG0038 Ca2+-binding kinase in 99.2 8.4E-11 1.8E-15 86.0 8.1 104 114-221 72-187 (189)
29 cd05029 S-100A6 S-100A6: S-100 99.2 1.5E-10 3.3E-15 79.9 9.0 69 142-213 8-81 (88)
30 PF13499 EF-hand_7: EF-hand do 99.2 7.4E-11 1.6E-15 77.1 6.8 62 78-140 1-66 (66)
31 cd05027 S-100B S-100B: S-100B 99.2 1.8E-10 3.8E-15 79.6 7.9 68 75-143 6-80 (88)
32 cd05031 S-100A10_like S-100A10 99.1 4.5E-10 9.8E-15 78.8 9.7 71 143-216 7-84 (94)
33 smart00027 EH Eps15 homology d 99.1 1.8E-10 4E-15 81.1 7.8 74 71-147 4-77 (96)
34 cd05026 S-100Z S-100Z: S-100Z 99.1 5.7E-10 1.2E-14 78.0 9.6 68 143-213 9-83 (93)
35 cd05025 S-100A1 S-100A1: S-100 99.1 7.5E-10 1.6E-14 77.3 9.7 68 143-213 8-82 (92)
36 KOG0031 Myosin regulatory ligh 99.1 1E-09 2.2E-14 81.2 10.2 91 141-238 29-127 (171)
37 smart00027 EH Eps15 homology d 99.1 1.1E-09 2.5E-14 77.0 9.2 70 143-217 9-78 (96)
38 KOG0034 Ca2+/calmodulin-depend 99.1 8.5E-09 1.8E-13 80.8 14.6 129 110-244 27-176 (187)
39 cd05025 S-100A1 S-100A1: S-100 99.0 1.9E-09 4.1E-14 75.3 9.1 69 76-145 8-83 (92)
40 cd00052 EH Eps15 homology doma 99.0 1.9E-09 4.1E-14 70.4 8.4 61 147-212 2-62 (67)
41 KOG0751 Mitochondrial aspartat 99.0 5.4E-09 1.2E-13 90.7 13.2 170 71-247 27-214 (694)
42 cd00213 S-100 S-100: S-100 dom 99.0 1.9E-09 4.2E-14 74.6 8.7 67 143-212 7-80 (88)
43 cd05031 S-100A10_like S-100A10 99.0 2.8E-09 6.1E-14 74.7 9.0 67 76-143 7-80 (94)
44 cd05026 S-100Z S-100Z: S-100Z 99.0 2.1E-09 4.5E-14 75.2 7.9 68 75-143 8-82 (93)
45 KOG0030 Myosin essential light 99.0 4.8E-09 1E-13 76.4 9.7 88 143-231 10-106 (152)
46 PLN02964 phosphatidylserine de 99.0 5.3E-09 1.2E-13 95.8 12.2 91 144-243 143-243 (644)
47 cd05023 S-100A11 S-100A11: S-1 99.0 3.7E-09 8E-14 73.1 8.5 69 142-213 7-82 (89)
48 cd00052 EH Eps15 homology doma 99.0 2.4E-09 5.2E-14 69.9 7.2 61 80-143 2-62 (67)
49 cd00213 S-100 S-100: S-100 dom 99.0 2.1E-09 4.5E-14 74.4 7.1 69 74-143 5-80 (88)
50 PF13833 EF-hand_8: EF-hand do 99.0 2.8E-09 6E-14 66.7 6.9 52 157-211 1-53 (54)
51 cd05029 S-100A6 S-100A6: S-100 99.0 3.7E-09 8E-14 73.0 8.0 68 75-143 8-80 (88)
52 KOG0036 Predicted mitochondria 98.9 2.3E-08 5.1E-13 85.2 12.8 118 113-241 14-144 (463)
53 cd00051 EFh EF-hand, calcium b 98.9 1.1E-08 2.4E-13 65.0 7.6 61 146-209 2-62 (63)
54 PF13833 EF-hand_8: EF-hand do 98.8 1E-08 2.2E-13 64.1 6.0 52 90-142 1-53 (54)
55 KOG2562 Protein phosphatase 2 98.8 2.7E-08 5.9E-13 85.9 10.4 118 115-239 227-377 (493)
56 cd00051 EFh EF-hand, calcium b 98.8 2.7E-08 5.8E-13 63.2 7.4 61 79-140 2-62 (63)
57 cd05023 S-100A11 S-100A11: S-1 98.8 3.5E-08 7.7E-13 68.2 7.8 68 75-143 7-81 (89)
58 cd05030 calgranulins Calgranul 98.8 3.3E-08 7.1E-13 68.3 7.4 67 143-212 7-80 (88)
59 KOG0040 Ca2+-binding actin-bun 98.8 9.7E-08 2.1E-12 92.0 12.2 134 67-209 2243-2396(2399)
60 cd00252 SPARC_EC SPARC_EC; ext 98.8 3.4E-08 7.5E-13 71.5 7.2 63 142-211 46-108 (116)
61 PF14658 EF-hand_9: EF-hand do 98.7 5.7E-08 1.2E-12 62.2 6.6 62 148-211 2-64 (66)
62 KOG0041 Predicted Ca2+-binding 98.7 4.8E-08 1E-12 75.5 6.7 101 68-169 90-200 (244)
63 PF14658 EF-hand_9: EF-hand do 98.7 6.4E-08 1.4E-12 62.0 6.1 61 81-142 2-64 (66)
64 KOG2643 Ca2+ binding protein, 98.7 2.9E-07 6.3E-12 79.1 10.9 110 126-240 211-343 (489)
65 cd00252 SPARC_EC SPARC_EC; ext 98.6 1.6E-07 3.5E-12 68.0 7.6 64 73-141 44-107 (116)
66 KOG4251 Calcium binding protei 98.6 7.1E-08 1.5E-12 76.9 5.3 156 75-234 99-302 (362)
67 KOG0751 Mitochondrial aspartat 98.6 1.1E-06 2.4E-11 76.6 12.8 160 77-243 108-278 (694)
68 KOG2562 Protein phosphatase 2 98.6 3.5E-07 7.7E-12 79.2 9.1 123 80-208 281-421 (493)
69 cd05030 calgranulins Calgranul 98.5 3.2E-07 6.8E-12 63.4 6.9 67 75-142 6-79 (88)
70 PF00036 EF-hand_1: EF hand; 98.5 1.8E-07 3.8E-12 50.3 3.8 29 145-173 1-29 (29)
71 KOG0041 Predicted Ca2+-binding 98.5 9.7E-07 2.1E-11 68.4 9.1 66 143-211 98-163 (244)
72 cd05024 S-100A10 S-100A10: A s 98.5 2.5E-06 5.4E-11 58.6 9.8 74 143-220 7-86 (91)
73 PF12763 EF-hand_4: Cytoskelet 98.4 1.7E-06 3.6E-11 61.5 7.2 70 70-143 3-72 (104)
74 PF13405 EF-hand_6: EF-hand do 98.4 5.8E-07 1.3E-11 49.2 3.8 30 145-174 1-31 (31)
75 PF00036 EF-hand_1: EF hand; 98.3 6.4E-07 1.4E-11 48.2 3.5 29 78-106 1-29 (29)
76 PF13405 EF-hand_6: EF-hand do 98.2 1.6E-06 3.6E-11 47.4 3.5 30 78-107 1-31 (31)
77 KOG4666 Predicted phosphate ac 98.2 1.4E-06 3.1E-11 72.3 4.4 104 113-222 259-370 (412)
78 cd05024 S-100A10 S-100A10: A s 98.2 2E-05 4.3E-10 54.2 9.2 67 75-143 6-77 (91)
79 PF12763 EF-hand_4: Cytoskelet 98.0 4.7E-05 1E-09 54.0 8.6 66 144-215 10-75 (104)
80 KOG0169 Phosphoinositide-speci 98.0 6.3E-05 1.4E-09 69.3 11.3 139 71-211 130-274 (746)
81 KOG0377 Protein serine/threoni 98.0 0.0001 2.3E-09 63.8 11.7 123 112-240 463-612 (631)
82 PF13202 EF-hand_5: EF hand; P 98.0 9.9E-06 2.1E-10 41.9 3.2 25 146-170 1-25 (25)
83 KOG1029 Endocytic adaptor prot 98.0 8.7E-05 1.9E-09 68.2 11.2 64 145-213 196-259 (1118)
84 KOG0040 Ca2+-binding actin-bun 97.9 4.8E-05 1E-09 74.2 8.5 78 144-224 2253-2345(2399)
85 PF13202 EF-hand_5: EF hand; P 97.9 2E-05 4.4E-10 40.7 3.1 25 79-103 1-25 (25)
86 PF14788 EF-hand_10: EF hand; 97.8 9.7E-05 2.1E-09 44.7 6.2 50 160-212 1-50 (51)
87 KOG0046 Ca2+-binding actin-bun 97.8 3.1E-05 6.8E-10 68.3 5.6 73 68-142 10-85 (627)
88 PF14788 EF-hand_10: EF hand; 97.8 6.1E-05 1.3E-09 45.6 5.2 49 93-142 1-49 (51)
89 PRK12309 transaldolase/EF-hand 97.8 9.5E-05 2.1E-09 64.7 8.1 53 144-212 334-386 (391)
90 KOG4251 Calcium binding protei 97.7 0.00012 2.6E-09 58.7 7.1 125 80-208 193-342 (362)
91 PRK12309 transaldolase/EF-hand 97.7 8.1E-05 1.8E-09 65.2 6.7 118 109-241 247-383 (391)
92 KOG0998 Synaptic vesicle prote 97.7 0.00021 4.7E-09 68.5 8.9 71 67-141 119-189 (847)
93 KOG0038 Ca2+-binding kinase in 97.6 0.00028 6E-09 52.2 7.1 92 80-172 74-177 (189)
94 KOG1707 Predicted Ras related/ 97.6 0.00041 9E-09 62.4 9.1 134 70-210 188-376 (625)
95 KOG1924 RhoA GTPase effector D 97.4 0.0021 4.4E-08 59.7 11.3 11 202-212 764-774 (1102)
96 PF05042 Caleosin: Caleosin re 97.4 0.0028 6.1E-08 48.6 9.9 130 75-208 5-163 (174)
97 PF09279 EF-hand_like: Phospho 97.3 0.0011 2.3E-08 45.1 6.0 65 145-211 1-69 (83)
98 PF10591 SPARC_Ca_bdg: Secrete 97.2 9.1E-05 2E-09 53.5 0.6 53 113-166 54-110 (113)
99 KOG0046 Ca2+-binding actin-bun 97.2 0.0012 2.6E-08 58.6 7.5 66 143-212 18-86 (627)
100 PF10591 SPARC_Ca_bdg: Secrete 97.2 0.00014 3E-09 52.5 1.5 61 143-208 53-113 (113)
101 KOG2391 Vacuolar sorting prote 97.0 0.011 2.4E-07 49.8 10.5 43 165-212 301-343 (365)
102 KOG4666 Predicted phosphate ac 96.9 0.0027 5.9E-08 53.2 6.6 96 77-173 259-360 (412)
103 smart00054 EFh EF-hand, calciu 96.9 0.0013 2.8E-08 34.0 3.2 27 146-172 2-28 (29)
104 KOG1029 Endocytic adaptor prot 96.9 0.018 3.9E-07 53.6 12.0 69 71-142 189-257 (1118)
105 KOG1955 Ral-GTPase effector RA 96.8 0.0092 2E-07 52.8 9.3 71 69-142 223-293 (737)
106 smart00054 EFh EF-hand, calciu 96.8 0.0024 5.1E-08 32.9 3.4 27 79-105 2-28 (29)
107 KOG4065 Uncharacterized conser 96.6 0.0061 1.3E-07 43.3 5.4 57 148-207 71-141 (144)
108 KOG0035 Ca2+-binding actin-bun 96.5 0.013 2.9E-07 55.7 8.4 132 70-208 740-883 (890)
109 KOG1923 Rac1 GTPase effector F 96.3 0.065 1.4E-06 50.0 11.5 45 146-191 442-487 (830)
110 KOG0169 Phosphoinositide-speci 96.2 0.12 2.6E-06 48.4 12.8 125 111-243 134-274 (746)
111 KOG4065 Uncharacterized conser 96.1 0.021 4.5E-07 40.7 5.8 67 70-139 62-142 (144)
112 PF09279 EF-hand_like: Phospho 95.9 0.022 4.7E-07 38.6 5.0 62 78-141 1-68 (83)
113 PLN02952 phosphoinositide phos 95.6 0.08 1.7E-06 49.0 9.1 83 127-211 13-110 (599)
114 KOG0042 Glycerol-3-phosphate d 95.5 0.018 3.9E-07 51.9 4.4 75 68-143 584-658 (680)
115 PF05517 p25-alpha: p25-alpha 95.3 0.31 6.7E-06 37.2 10.0 85 79-173 1-91 (154)
116 PF05517 p25-alpha: p25-alpha 95.1 0.15 3.2E-06 39.0 7.7 63 147-212 2-70 (154)
117 KOG3555 Ca2+-binding proteogly 94.8 0.076 1.6E-06 45.1 5.6 96 78-174 212-312 (434)
118 PF08726 EFhand_Ca_insen: Ca2+ 94.8 0.03 6.5E-07 36.4 2.6 57 144-208 6-66 (69)
119 PF05042 Caleosin: Caleosin re 94.7 0.28 6.1E-06 37.8 8.2 32 177-211 93-124 (174)
120 KOG2243 Ca2+ release channel ( 94.7 0.15 3.3E-06 50.7 7.9 60 147-210 4060-4119(5019)
121 KOG1265 Phospholipase C [Lipid 93.8 1.3 2.8E-05 42.6 11.9 122 87-211 158-299 (1189)
122 KOG3866 DNA-binding protein of 93.5 0.34 7.3E-06 40.7 7.0 60 146-208 246-321 (442)
123 KOG1707 Predicted Ras related/ 92.9 0.8 1.7E-05 42.0 8.9 94 143-236 194-338 (625)
124 KOG1955 Ral-GTPase effector RA 92.8 0.3 6.4E-06 43.6 5.9 64 144-212 231-294 (737)
125 KOG0998 Synaptic vesicle prote 92.8 0.26 5.5E-06 47.9 6.1 132 76-216 10-195 (847)
126 PF09069 EF-hand_3: EF-hand; 91.7 2.1 4.6E-05 29.4 7.9 62 144-211 3-75 (90)
127 KOG3077 Uncharacterized conser 91.5 5.8 0.00013 32.8 11.6 162 76-244 63-251 (260)
128 KOG3555 Ca2+-binding proteogly 91.2 0.33 7.2E-06 41.4 4.2 62 143-211 249-310 (434)
129 KOG0042 Glycerol-3-phosphate d 90.6 0.66 1.4E-05 42.3 5.8 65 145-212 594-658 (680)
130 KOG4347 GTPase-activating prot 90.3 0.46 1E-05 43.8 4.7 70 95-166 536-612 (671)
131 KOG4578 Uncharacterized conser 90.3 0.18 3.9E-06 42.6 1.9 64 145-211 334-398 (421)
132 KOG0917 Uncharacterized conser 90.1 4.4 9.6E-05 33.6 9.6 18 129-146 312-329 (338)
133 KOG4578 Uncharacterized conser 89.9 0.32 6.9E-06 41.2 3.1 57 115-172 335-398 (421)
134 KOG0035 Ca2+-binding actin-bun 89.4 1.1 2.5E-05 43.1 6.7 67 143-212 746-817 (890)
135 COG5178 PRP8 U5 snRNP spliceos 89.1 0.4 8.6E-06 47.2 3.4 30 159-188 197-232 (2365)
136 PLN02952 phosphoinositide phos 87.6 3.3 7.1E-05 38.7 8.3 83 157-243 13-110 (599)
137 KOG3866 DNA-binding protein of 87.5 1.1 2.4E-05 37.8 4.6 76 81-171 248-323 (442)
138 PF11116 DUF2624: Protein of u 87.1 7.2 0.00016 26.4 7.6 51 159-212 13-63 (85)
139 KOG1264 Phospholipase C [Lipid 85.7 2.5 5.4E-05 40.4 6.4 141 69-211 135-293 (1267)
140 KOG4403 Cell surface glycoprot 85.5 3.3 7.2E-05 36.5 6.7 28 144-171 68-95 (575)
141 KOG2243 Ca2+ release channel ( 84.9 1.7 3.6E-05 43.9 5.1 56 83-140 4063-4118(5019)
142 PF09068 EF-hand_2: EF hand; 83.6 8.7 0.00019 28.2 7.4 27 146-172 99-125 (127)
143 KOG2236 Uncharacterized conser 82.9 4.4 9.5E-05 36.1 6.4 13 5-17 410-422 (483)
144 PF09069 EF-hand_3: EF-hand; 82.6 13 0.00028 25.5 7.5 28 77-105 3-30 (90)
145 KOG3449 60S acidic ribosomal p 81.1 10 0.00022 26.9 6.5 46 146-191 3-48 (112)
146 PF08976 DUF1880: Domain of un 80.9 1.3 2.9E-05 31.7 2.2 32 177-211 4-35 (118)
147 KOG2391 Vacuolar sorting prote 80.2 38 0.00082 29.2 12.1 29 144-172 313-342 (365)
148 PLN02222 phosphoinositide phos 79.4 6.7 0.00015 36.5 6.7 64 144-211 25-90 (581)
149 PF14513 DAG_kinase_N: Diacylg 78.6 9.2 0.0002 28.6 6.1 64 129-192 6-81 (138)
150 cd07313 terB_like_2 tellurium 78.3 14 0.00029 25.7 6.8 76 91-169 13-97 (104)
151 KOG4347 GTPase-activating prot 77.4 7 0.00015 36.4 6.1 59 76-136 554-612 (671)
152 cd08315 Death_TRAILR_DR4_DR5 D 76.8 22 0.00048 24.7 9.3 89 76-187 3-91 (96)
153 PF11116 DUF2624: Protein of u 76.6 21 0.00045 24.2 7.8 50 92-142 13-62 (85)
154 PF14513 DAG_kinase_N: Diacylg 75.9 6.8 0.00015 29.3 4.7 55 156-212 3-61 (138)
155 PTZ00373 60S Acidic ribosomal 75.7 18 0.00038 26.0 6.6 53 147-207 6-58 (112)
156 KOG4286 Dystrophin-like protei 75.0 73 0.0016 30.7 11.9 159 73-240 375-577 (966)
157 PTZ00373 60S Acidic ribosomal 74.6 21 0.00046 25.6 6.8 54 79-138 5-58 (112)
158 KOG0506 Glutaminase (contains 73.7 9.8 0.00021 34.3 5.8 62 149-210 91-157 (622)
159 PF12631 GTPase_Cys_C: Catalyt 72.3 14 0.00031 24.0 5.2 58 132-189 11-72 (73)
160 PRK09430 djlA Dna-J like membr 72.2 52 0.0011 27.5 9.7 130 89-222 67-224 (267)
161 KOG0917 Uncharacterized conser 71.7 29 0.00062 29.0 7.7 33 68-104 292-324 (338)
162 PLN02228 Phosphoinositide phos 71.3 17 0.00036 33.9 7.1 65 144-211 24-92 (567)
163 PLN02230 phosphoinositide phos 70.5 17 0.00037 34.0 7.0 67 144-211 29-102 (598)
164 PF05099 TerB: Tellurite resis 69.9 6.7 0.00015 28.9 3.6 81 158-243 37-126 (140)
165 cd05833 Ribosomal_P2 Ribosomal 69.3 30 0.00065 24.7 6.6 54 147-208 4-57 (109)
166 PF07308 DUF1456: Protein of u 69.2 25 0.00054 22.7 5.6 32 161-192 14-45 (68)
167 PF07879 PHB_acc_N: PHB/PHA ac 68.4 9.5 0.00021 24.3 3.4 41 151-191 10-60 (64)
168 cd05833 Ribosomal_P2 Ribosomal 67.9 36 0.00078 24.3 6.7 55 79-139 3-57 (109)
169 PF08414 NADPH_Ox: Respiratory 67.5 14 0.0003 25.8 4.3 14 159-172 79-92 (100)
170 PF01023 S_100: S-100/ICaBP ty 67.4 14 0.00031 21.6 3.9 30 143-172 5-36 (44)
171 COG4103 Uncharacterized protei 67.0 31 0.00067 25.8 6.3 59 148-211 34-94 (148)
172 PF08726 EFhand_Ca_insen: Ca2+ 65.9 9.4 0.0002 24.8 3.1 29 75-104 4-32 (69)
173 PF07862 Nif11: Nitrogen fixat 65.7 22 0.00048 21.0 4.7 42 134-182 7-48 (49)
174 KOG2301 Voltage-gated Ca2+ cha 65.5 20 0.00042 37.7 6.8 71 70-142 1410-1484(1592)
175 PF05872 DUF853: Bacterial pro 65.5 32 0.0007 31.2 7.3 75 93-173 105-183 (502)
176 KOG3671 Actin regulatory prote 65.2 20 0.00044 32.4 6.0 7 98-104 497-503 (569)
177 PLN02223 phosphoinositide phos 64.6 26 0.00056 32.4 6.8 67 144-211 16-92 (537)
178 TIGR01848 PHA_reg_PhaR polyhyd 64.5 21 0.00046 25.2 4.9 48 151-201 10-67 (107)
179 TIGR03798 ocin_TIGR03798 bacte 64.1 34 0.00074 21.6 6.3 49 133-188 4-52 (64)
180 PLN02222 phosphoinositide phos 63.8 27 0.00059 32.7 6.9 64 76-141 24-89 (581)
181 PF03672 UPF0154: Uncharacteri 63.8 26 0.00055 22.4 4.7 43 147-190 19-61 (64)
182 KOG0039 Ferric reductase, NADH 63.5 18 0.00039 34.4 5.8 78 128-211 2-89 (646)
183 PF12174 RST: RCD1-SRO-TAF4 (R 63.2 39 0.00084 22.0 5.7 47 160-212 8-54 (70)
184 KOG3449 60S acidic ribosomal p 61.8 32 0.00068 24.5 5.3 55 79-139 3-57 (112)
185 PF00404 Dockerin_1: Dockerin 61.8 11 0.00024 18.3 2.2 15 154-168 1-15 (21)
186 PRK07003 DNA polymerase III su 61.6 55 0.0012 31.9 8.5 12 159-170 230-241 (830)
187 TIGR02675 tape_meas_nterm tape 61.3 9.4 0.0002 25.2 2.6 30 112-141 12-41 (75)
188 COG4103 Uncharacterized protei 61.1 68 0.0015 24.1 7.6 87 81-172 34-129 (148)
189 KOG2871 Uncharacterized conser 60.8 6 0.00013 34.4 2.0 63 76-139 308-371 (449)
190 PHA02335 hypothetical protein 60.7 38 0.00082 23.9 5.5 31 198-228 23-53 (118)
191 cd08316 Death_FAS_TNFRSF6 Deat 60.1 56 0.0012 22.8 7.8 78 93-188 17-94 (97)
192 KOG0871 Class 2 transcription 59.9 22 0.00048 26.6 4.5 47 135-186 46-92 (156)
193 PF05099 TerB: Tellurite resis 59.7 12 0.00026 27.5 3.3 73 90-165 36-117 (140)
194 KOG2871 Uncharacterized conser 59.7 8.3 0.00018 33.5 2.6 61 144-207 309-370 (449)
195 cd07313 terB_like_2 tellurium 59.6 36 0.00078 23.5 5.6 51 158-211 13-65 (104)
196 KOG4849 mRNA cleavage factor I 59.1 26 0.00056 30.3 5.4 26 93-119 356-381 (498)
197 PRK00523 hypothetical protein; 58.3 35 0.00076 22.3 4.7 44 146-190 26-69 (72)
198 PF07308 DUF1456: Protein of u 56.9 41 0.00089 21.7 5.0 31 94-124 14-44 (68)
199 cd04411 Ribosomal_P1_P2_L12p R 56.9 68 0.0015 22.7 7.1 41 94-140 17-57 (105)
200 PLN02228 Phosphoinositide phos 56.8 62 0.0013 30.3 7.9 63 76-141 23-91 (567)
201 COG2818 Tag 3-methyladenine DN 56.4 14 0.00031 28.9 3.2 50 136-185 47-96 (188)
202 PLN00138 large subunit ribosom 56.2 73 0.0016 22.9 6.7 53 80-138 4-56 (113)
203 KOG3077 Uncharacterized conser 55.0 89 0.0019 26.0 7.7 64 145-211 65-129 (260)
204 COG3763 Uncharacterized protei 54.8 53 0.0012 21.3 5.0 44 147-191 26-69 (71)
205 PF12995 DUF3879: Domain of un 54.4 87 0.0019 24.1 7.0 56 94-158 2-57 (186)
206 KOG4403 Cell surface glycoprot 54.3 44 0.00095 29.8 6.1 78 76-158 67-165 (575)
207 cd04411 Ribosomal_P1_P2_L12p R 53.6 78 0.0017 22.4 7.3 40 161-208 17-56 (105)
208 PLN02230 phosphoinositide phos 53.5 73 0.0016 30.0 7.8 66 75-141 27-101 (598)
209 PLN00138 large subunit ribosom 52.8 56 0.0012 23.5 5.6 44 148-191 5-48 (113)
210 PRK01844 hypothetical protein; 52.7 47 0.001 21.7 4.6 44 146-190 25-68 (72)
211 COG2058 RPP1A Ribosomal protei 51.4 86 0.0019 22.3 6.2 50 149-207 6-55 (109)
212 PRK06402 rpl12p 50S ribosomal 50.7 88 0.0019 22.2 6.7 32 160-191 16-47 (106)
213 COG2818 Tag 3-methyladenine DN 49.7 80 0.0017 24.8 6.4 43 76-118 54-96 (188)
214 KOG4301 Beta-dystrobrevin [Cyt 49.6 1.7E+02 0.0037 25.4 8.7 28 144-172 146-173 (434)
215 PF03875 Statherin: Statherin; 49.5 27 0.00058 19.6 2.7 12 3-15 15-26 (42)
216 TIGR00624 tag DNA-3-methyladen 49.3 21 0.00046 27.9 3.2 53 136-188 45-97 (179)
217 PHA02105 hypothetical protein 48.2 29 0.00064 21.5 3.0 50 160-210 4-56 (68)
218 PRK10353 3-methyl-adenine DNA 47.7 18 0.00038 28.6 2.5 53 136-188 46-98 (187)
219 COG4359 Uncharacterized conser 47.7 48 0.001 26.2 4.8 74 126-210 9-86 (220)
220 PF09068 EF-hand_2: EF hand; 47.7 1.1E+02 0.0024 22.4 9.8 43 130-172 14-71 (127)
221 PF06384 ICAT: Beta-catenin-in 47.3 24 0.00053 23.5 2.7 24 164-187 20-43 (78)
222 KOG2675 Adenylate cyclase-asso 47.1 57 0.0012 29.2 5.7 9 80-88 265-273 (480)
223 PF13608 Potyvirid-P3: Protein 46.6 20 0.00042 32.5 3.0 93 76-177 288-386 (445)
224 cd00086 homeodomain Homeodomai 46.2 64 0.0014 19.3 5.4 39 144-189 13-51 (59)
225 KOG3557 Epidermal growth facto 46.2 38 0.00083 31.8 4.7 48 201-248 276-339 (721)
226 PF12174 RST: RCD1-SRO-TAF4 (R 45.9 43 0.00093 21.8 3.8 16 157-172 38-53 (70)
227 PF11848 DUF3368: Domain of un 45.7 53 0.0012 19.4 3.9 32 158-189 15-47 (48)
228 PF01885 PTS_2-RNA: RNA 2'-pho 45.7 38 0.00083 26.6 4.2 38 154-191 26-63 (186)
229 KOG1925 Rac1 GTPase effector F 45.4 2.5E+02 0.0054 25.9 12.7 12 199-210 545-556 (817)
230 PRK12270 kgd alpha-ketoglutara 45.2 77 0.0017 31.8 6.8 29 126-154 165-195 (1228)
231 PF08461 HTH_12: Ribonuclease 45.2 36 0.00079 21.7 3.3 37 90-127 10-46 (66)
232 KOG1265 Phospholipase C [Lipid 45.1 2E+02 0.0042 28.6 9.2 64 77-141 221-298 (1189)
233 PF13551 HTH_29: Winged helix- 44.1 54 0.0012 22.6 4.5 52 71-122 58-111 (112)
234 PF07128 DUF1380: Protein of u 43.0 41 0.00089 25.1 3.7 33 160-192 26-58 (139)
235 PF08976 DUF1880: Domain of un 42.8 17 0.00037 26.1 1.6 34 109-143 3-36 (118)
236 KOG0506 Glutaminase (contains 42.5 94 0.002 28.3 6.4 60 82-141 91-157 (622)
237 KOG4070 Putative signal transd 42.3 48 0.001 25.1 4.0 66 76-142 11-85 (180)
238 PF08461 HTH_12: Ribonuclease 42.2 42 0.00092 21.4 3.3 36 157-192 10-45 (66)
239 PTZ00111 DNA replication licen 42.1 3.2E+02 0.007 27.3 10.5 124 69-192 715-898 (915)
240 PF10873 DUF2668: Protein of u 41.7 68 0.0015 24.1 4.6 11 18-28 110-120 (155)
241 PHA02771 hypothetical protein; 41.5 39 0.00084 23.1 3.1 14 177-190 32-45 (90)
242 COG2058 RPP1A Ribosomal protei 41.2 1.3E+02 0.0028 21.4 6.3 41 93-139 16-56 (109)
243 PF08414 NADPH_Ox: Respiratory 40.8 1.1E+02 0.0024 21.4 5.3 61 145-210 31-91 (100)
244 cd07176 terB tellurite resista 40.6 69 0.0015 22.1 4.6 72 91-166 16-99 (111)
245 COG2036 HHT1 Histones H3 and H 40.6 1.2E+02 0.0026 20.9 5.7 78 95-176 5-87 (91)
246 PF13929 mRNA_stabil: mRNA sta 40.5 2.3E+02 0.005 24.1 14.8 114 129-246 46-175 (292)
247 PF11593 Med3: Mediator comple 40.5 58 0.0013 28.4 4.7 13 199-211 42-54 (379)
248 PRK00819 RNA 2'-phosphotransfe 40.4 56 0.0012 25.6 4.4 34 156-189 29-62 (179)
249 TIGR01639 P_fal_TIGR01639 Plas 39.7 95 0.0021 19.4 5.8 34 158-191 7-40 (61)
250 cd05831 Ribosomal_P1 Ribosomal 39.7 1.2E+02 0.0026 21.4 5.5 43 91-139 15-57 (103)
251 PF01698 FLO_LFY: Floricaula / 39.4 9.9 0.00021 33.2 0.0 12 76-87 48-59 (386)
252 PF03352 Adenine_glyco: Methyl 39.3 19 0.00042 28.1 1.6 54 136-189 41-94 (179)
253 PF09373 PMBR: Pseudomurein-bi 38.3 50 0.0011 17.8 2.7 16 128-143 2-17 (33)
254 PF01325 Fe_dep_repress: Iron 38.0 82 0.0018 19.6 4.1 47 71-124 2-48 (60)
255 PF03672 UPF0154: Uncharacteri 37.9 76 0.0016 20.3 3.8 33 91-123 29-61 (64)
256 KOG4286 Dystrophin-like protei 37.8 99 0.0021 29.8 6.1 42 83-124 476-517 (966)
257 KOG2675 Adenylate cyclase-asso 37.7 47 0.001 29.7 3.8 13 91-103 344-356 (480)
258 PRK06402 rpl12p 50S ribosomal 37.4 1.5E+02 0.0032 21.0 7.0 41 93-139 16-56 (106)
259 PF10897 DUF2713: Protein of u 37.4 78 0.0017 25.1 4.6 38 197-234 175-230 (246)
260 COG3797 Uncharacterized protei 37.0 1.1E+02 0.0024 23.8 5.3 82 147-241 5-86 (178)
261 PF12419 DUF3670: SNF2 Helicas 36.9 69 0.0015 23.8 4.3 49 157-208 80-138 (141)
262 cd07894 Adenylation_RNA_ligase 36.8 80 0.0017 27.5 5.2 90 83-172 131-238 (342)
263 TIGR00135 gatC glutamyl-tRNA(G 36.8 65 0.0014 22.0 3.8 30 161-190 1-30 (93)
264 KOG1954 Endocytosis/signaling 36.8 52 0.0011 29.1 3.9 59 76-138 443-501 (532)
265 PLN03081 pentatricopeptide (PP 36.3 3.9E+02 0.0085 25.5 15.3 30 77-106 104-133 (697)
266 PF02761 Cbl_N2: CBL proto-onc 36.0 1.3E+02 0.0028 20.4 4.9 49 92-141 21-69 (85)
267 PF02337 Gag_p10: Retroviral G 35.9 1.4E+02 0.003 20.5 5.2 66 163-234 11-78 (90)
268 KOG4070 Putative signal transd 35.9 80 0.0017 24.0 4.3 13 197-209 71-83 (180)
269 PRK00810 nifW nitrogenase stab 35.8 1.7E+02 0.0036 21.1 6.2 32 202-233 74-106 (113)
270 PRK08181 transposase; Validate 35.7 97 0.0021 25.9 5.4 75 91-169 4-96 (269)
271 PRK01294 lipase chaperone; Pro 35.6 3E+02 0.0065 23.9 10.0 14 159-172 150-163 (336)
272 PRK00819 RNA 2'-phosphotransfe 35.5 69 0.0015 25.1 4.2 44 87-134 27-70 (179)
273 PF08730 Rad33: Rad33; InterP 35.2 2.1E+02 0.0046 22.1 11.6 151 68-226 5-168 (170)
274 PLN02223 phosphoinositide phos 35.2 2.2E+02 0.0048 26.5 7.8 65 76-142 15-92 (537)
275 TIGR02933 nifM_nitrog nitrogen 34.9 2.6E+02 0.0056 23.0 8.6 96 70-172 18-113 (256)
276 PF04558 tRNA_synt_1c_R1: Glut 34.9 1.5E+02 0.0032 22.9 5.8 48 144-192 85-132 (164)
277 PF06648 DUF1160: Protein of u 34.6 1E+02 0.0022 22.5 4.5 44 78-124 38-82 (122)
278 PF09336 Vps4_C: Vps4 C termin 33.8 63 0.0014 20.4 3.1 26 160-185 29-54 (62)
279 PRK00034 gatC aspartyl/glutamy 33.7 80 0.0017 21.5 3.9 31 160-190 2-32 (95)
280 PF13929 mRNA_stabil: mRNA sta 33.6 3E+02 0.0065 23.4 12.8 157 82-242 78-246 (292)
281 PF01885 PTS_2-RNA: RNA 2'-pho 33.4 70 0.0015 25.1 3.9 38 87-124 26-63 (186)
282 cd05831 Ribosomal_P1 Ribosomal 33.0 1.6E+02 0.0035 20.7 5.3 35 157-191 14-48 (103)
283 TIGR00624 tag DNA-3-methyladen 32.9 1.1E+02 0.0024 23.9 4.9 45 76-120 52-96 (179)
284 PRK15319 AIDA autotransporter- 32.8 63 0.0014 34.4 4.3 6 85-90 1749-1754(2039)
285 KOG1830 Wiskott Aldrich syndro 32.8 1.3E+02 0.0029 26.9 5.7 6 232-237 511-516 (518)
286 PRK10371 DNA-binding transcrip 32.7 3E+02 0.0066 23.2 9.6 53 79-142 193-245 (302)
287 PF10437 Lip_prot_lig_C: Bacte 32.6 1.2E+02 0.0026 20.1 4.6 45 161-209 42-86 (86)
288 cd08327 CARD_RAIDD Caspase act 32.6 1.7E+02 0.0037 20.2 6.2 58 158-223 33-90 (94)
289 cd06404 PB1_aPKC PB1 domain is 32.4 96 0.0021 20.9 3.8 20 213-232 59-78 (83)
290 PF12355 Dscam_C: Down syndrom 32.2 93 0.002 22.1 3.9 8 5-12 23-30 (124)
291 COG4807 Uncharacterized protei 32.1 2.1E+02 0.0046 21.2 8.2 40 143-191 90-129 (155)
292 PF12825 DUF3818: Domain of un 31.6 3.5E+02 0.0076 23.6 8.4 49 196-245 288-337 (341)
293 PRK03968 DNA primase large sub 31.5 2.5E+02 0.0055 24.7 7.1 75 154-243 115-189 (399)
294 PF06207 DUF1002: Protein of u 31.3 67 0.0015 26.2 3.6 47 162-211 173-223 (225)
295 PF06648 DUF1160: Protein of u 31.3 1.3E+02 0.0027 22.0 4.6 47 143-192 36-83 (122)
296 PRK08181 transposase; Validate 31.2 1.5E+02 0.0032 24.8 5.8 49 158-212 4-52 (269)
297 PF12419 DUF3670: SNF2 Helicas 31.1 1.1E+02 0.0024 22.7 4.6 49 90-139 80-138 (141)
298 smart00513 SAP Putative DNA-bi 31.0 68 0.0015 17.4 2.6 18 160-177 3-20 (35)
299 TIGR01209 RNA ligase, Pab1020 31.0 1.6E+02 0.0036 25.9 6.1 43 82-124 162-215 (374)
300 PF03979 Sigma70_r1_1: Sigma-7 30.9 61 0.0013 21.6 2.8 33 158-192 19-51 (82)
301 PRK00523 hypothetical protein; 30.6 1.1E+02 0.0024 20.0 3.8 33 91-123 37-69 (72)
302 PF06627 DUF1153: Protein of u 30.6 93 0.002 21.3 3.5 30 158-192 47-76 (90)
303 PF00046 Homeobox: Homeobox do 30.4 1.2E+02 0.0027 18.0 4.8 29 158-188 22-50 (57)
304 PF12995 DUF3879: Domain of un 30.3 2.1E+02 0.0046 22.0 5.8 56 161-227 2-57 (186)
305 PRK10353 3-methyl-adenine DNA 29.9 72 0.0016 25.2 3.4 44 76-119 53-96 (187)
306 PF07957 DUF3294: Protein of u 29.9 2.7E+02 0.006 22.5 6.7 31 162-192 157-192 (216)
307 KOG4004 Matricellular protein 29.6 21 0.00045 28.4 0.4 51 120-170 194-248 (259)
308 PRK13654 magnesium-protoporphy 29.5 57 0.0012 28.1 2.9 82 106-192 38-126 (355)
309 PF03206 NifW: Nitrogen fixati 29.3 2.1E+02 0.0045 20.3 5.5 31 201-232 70-100 (105)
310 cd08306 Death_FADD Fas-associa 28.9 1.8E+02 0.004 19.5 6.0 71 97-185 14-84 (86)
311 KOG0144 RNA-binding protein CU 28.9 1.3E+02 0.0027 27.1 5.0 28 163-190 122-149 (510)
312 KOG0869 CCAAT-binding factor, 28.7 1.4E+02 0.0031 22.7 4.6 83 91-189 30-115 (168)
313 PF04361 DUF494: Protein of un 28.6 1.9E+02 0.0041 22.0 5.4 44 145-190 4-48 (155)
314 PHA03155 hypothetical protein; 28.4 2.3E+02 0.0049 20.4 5.8 87 93-182 7-101 (115)
315 PF14771 DUF4476: Domain of un 28.4 1.9E+02 0.0042 19.6 6.5 12 130-141 39-50 (95)
316 cd07316 terB_like_DjlA N-termi 28.3 2E+02 0.0043 19.6 7.0 11 158-168 13-23 (106)
317 PF02761 Cbl_N2: CBL proto-onc 28.2 2E+02 0.0042 19.6 6.2 47 159-208 21-67 (85)
318 PF09107 SelB-wing_3: Elongati 28.2 1.1E+02 0.0024 18.3 3.4 29 91-124 8-36 (50)
319 PLN02508 magnesium-protoporphy 28.2 93 0.002 26.8 4.0 13 110-122 38-50 (357)
320 KOG4849 mRNA cleavage factor I 27.6 4.2E+02 0.0091 23.2 15.7 16 90-105 368-383 (498)
321 KOG1785 Tyrosine kinase negati 27.4 4.5E+02 0.0098 23.5 11.1 29 213-241 243-272 (563)
322 cd08780 Death_TRADD Death Doma 27.4 2.1E+02 0.0045 19.6 6.2 67 97-179 14-84 (90)
323 KOG2301 Voltage-gated Ca2+ cha 27.3 46 0.001 35.1 2.5 63 144-210 1417-1483(1592)
324 TIGR01565 homeo_ZF_HD homeobox 26.9 80 0.0017 19.7 2.6 33 70-107 7-43 (58)
325 PF13335 Mg_chelatase_2: Magne 26.8 2.2E+02 0.0047 19.6 7.4 68 89-171 27-94 (96)
326 PF02037 SAP: SAP domain; Int 26.6 1.2E+02 0.0026 16.5 4.1 18 160-177 3-20 (35)
327 PF09415 CENP-X: CENP-S associ 26.6 1.7E+02 0.0036 19.1 4.2 40 133-172 28-67 (72)
328 COG4086 Predicted secreted pro 26.6 1.5E+02 0.0033 24.9 4.8 80 161-246 210-294 (299)
329 PF08044 DUF1707: Domain of un 26.4 80 0.0017 19.2 2.5 29 158-186 21-49 (53)
330 PF04695 Pex14_N: Peroxisomal 26.3 2.7E+02 0.0058 20.5 6.2 45 146-192 6-50 (136)
331 PF04876 Tenui_NCP: Tenuivirus 26.2 2.9E+02 0.0064 20.9 7.7 55 114-172 84-139 (175)
332 KOG1954 Endocytosis/signaling 26.1 96 0.0021 27.5 3.8 57 145-207 445-501 (532)
333 PF12307 DUF3631: Protein of u 25.9 1.9E+02 0.0041 22.8 5.1 47 143-192 102-158 (184)
334 KOG0039 Ferric reductase, NADH 25.8 2.6E+02 0.0056 26.8 6.9 73 158-240 2-88 (646)
335 PF04157 EAP30: EAP30/Vps36 fa 25.8 3.5E+02 0.0076 21.7 10.3 59 132-192 87-148 (223)
336 COG1508 RpoN DNA-directed RNA 25.7 5.1E+02 0.011 23.5 9.2 88 89-189 121-219 (444)
337 PF01316 Arg_repressor: Argini 25.5 1.5E+02 0.0032 19.3 3.8 32 159-190 18-49 (70)
338 PF07499 RuvA_C: RuvA, C-termi 25.1 1.5E+02 0.0033 17.3 4.8 38 163-207 3-40 (47)
339 TIGR03573 WbuX N-acetyl sugar 25.0 1.6E+02 0.0034 25.6 5.0 34 158-191 300-333 (343)
340 PF14223 UBN2: gag-polypeptide 24.7 2.5E+02 0.0055 19.7 8.4 47 160-213 63-110 (119)
341 COG0721 GatC Asp-tRNAAsn/Glu-t 24.3 1.4E+02 0.0029 20.8 3.7 31 160-190 2-32 (96)
342 COG2979 Uncharacterized protei 24.1 3.9E+02 0.0084 21.6 11.4 91 89-185 122-214 (225)
343 PRK14981 DNA-directed RNA poly 24.1 1.4E+02 0.0031 21.2 3.9 26 163-188 81-106 (112)
344 TIGR03685 L21P_arch 50S riboso 24.0 2.7E+02 0.0058 19.7 5.7 32 160-191 16-47 (105)
345 PF11593 Med3: Mediator comple 23.9 2.7E+02 0.0059 24.5 6.0 49 92-143 6-55 (379)
346 KOG1161 Protein involved in va 23.9 3.6E+02 0.0077 23.2 6.7 16 91-106 17-32 (310)
347 PHA02335 hypothetical protein 23.8 2.7E+02 0.0059 19.7 6.6 48 127-174 21-70 (118)
348 smart00666 PB1 PB1 domain. Pho 23.4 73 0.0016 20.7 2.2 44 198-242 19-66 (81)
349 TIGR02933 nifM_nitrog nitrogen 23.4 3.3E+02 0.0071 22.4 6.5 51 160-212 35-85 (256)
350 TIGR03573 WbuX N-acetyl sugar 23.3 1.8E+02 0.0039 25.2 5.1 36 128-169 300-341 (343)
351 TIGR03764 ICE_PFGI_1_parB inte 23.1 4.5E+02 0.0097 22.0 11.8 63 93-155 136-204 (258)
352 cd08327 CARD_RAIDD Caspase act 22.9 2.6E+02 0.0057 19.2 6.2 46 91-142 33-78 (94)
353 PRK09430 djlA Dna-J like membr 22.8 2.1E+02 0.0046 23.8 5.2 22 149-170 97-118 (267)
354 PF13623 SurA_N_2: SurA N-term 22.8 1.5E+02 0.0033 22.3 3.9 20 167-186 96-115 (145)
355 PF03556 Cullin_binding: Culli 22.6 3E+02 0.0065 19.8 6.6 89 148-241 28-116 (117)
356 PF02885 Glycos_trans_3N: Glyc 22.4 2.1E+02 0.0046 17.9 4.4 15 175-189 13-27 (66)
357 PF12486 DUF3702: ImpA domain 22.4 3.5E+02 0.0076 20.5 9.2 46 128-173 53-98 (148)
358 KOG1264 Phospholipase C [Lipid 22.3 2E+02 0.0042 28.4 5.2 93 146-242 146-248 (1267)
359 TIGR01628 PABP-1234 polyadenyl 22.2 3.3E+02 0.0073 25.2 7.0 9 133-141 537-545 (562)
360 KOG1785 Tyrosine kinase negati 22.1 5.8E+02 0.013 22.9 8.1 81 91-172 188-274 (563)
361 PF09412 XendoU: Endoribonucle 21.8 70 0.0015 26.8 2.1 120 73-207 60-186 (265)
362 cd00076 H4 Histone H4, one of 21.1 2.8E+02 0.006 18.8 7.5 32 146-177 51-82 (85)
363 PF06511 IpaD: Invasion plasmi 21.0 3.4E+02 0.0074 23.6 6.1 51 160-210 224-288 (337)
364 PF12793 SgrR_N: Sugar transpo 21.0 2.4E+02 0.0052 20.2 4.5 43 144-192 4-46 (115)
365 PF09184 PPP4R2: PPP4R2; Inte 21.0 5.2E+02 0.011 21.9 8.1 29 144-172 22-50 (288)
366 CHL00185 ycf59 magnesium-proto 21.0 1.1E+02 0.0025 26.3 3.2 35 106-140 34-69 (351)
367 KOG2419 Phosphatidylserine dec 20.8 1E+02 0.0022 29.2 3.1 74 97-171 421-532 (975)
368 cd05832 Ribosomal_L12p Ribosom 20.6 3.2E+02 0.007 19.4 5.6 32 160-191 16-47 (106)
369 COG5611 Predicted nucleic-acid 20.6 3.4E+02 0.0074 19.7 8.6 64 145-211 22-87 (130)
370 PRK11511 DNA-binding transcrip 20.6 3.3E+02 0.0072 19.5 7.6 57 75-142 7-63 (127)
371 COG0541 Ffh Signal recognition 20.5 5.1E+02 0.011 23.5 7.2 56 94-153 294-352 (451)
372 PRK10788 periplasmic folding c 20.5 7.3E+02 0.016 23.4 10.7 95 93-189 95-221 (623)
373 PF08349 DUF1722: Protein of u 20.5 3.3E+02 0.0071 19.4 5.9 14 158-171 83-96 (117)
374 PF09312 SurA_N: SurA N-termin 20.4 1.4E+02 0.003 21.3 3.2 21 171-191 61-81 (118)
375 PF03997 VPS28: VPS28 protein; 20.4 2.1E+02 0.0045 22.6 4.4 56 145-209 127-187 (188)
376 KOG1985 Vesicle coat complex C 20.3 3.2E+02 0.007 26.8 6.2 7 201-207 378-384 (887)
377 cd06395 PB1_Map2k5 PB1 domain 20.1 79 0.0017 21.2 1.7 46 199-245 22-69 (91)
No 1
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=100.00 E-value=5.9e-33 Score=215.10 Aligned_cols=165 Identities=45% Similarity=0.784 Sum_probs=158.2
Q ss_pred CchHHHHHHHHhcCCCCCcccHHHHHHHHHhcC-CCCCHHHHHHHHHHhcCCCCCcccCHHHHHHHHHcHHHHHHHHHHH
Q 025714 75 THPDVIRSFEMVDRDRSGFIDENELQQALSSGY-QRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCLGQWRAIFERY 153 (249)
Q Consensus 75 ~~~~l~~~F~~~D~d~~g~I~~~el~~~l~~lg-~~~s~~~~~~l~~~~d~~~~~g~i~~~eF~~~~~~~~~~~~~F~~~ 153 (249)
....+...|...|+|+.|.|+.+||..+|.... -.++.+.|+.|+.++|. +.+|.|+|+||..+|..++.|+.+|+.|
T Consensus 55 ~~~~~~~~f~~vD~d~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~-~~~G~i~f~EF~~Lw~~i~~Wr~vF~~~ 133 (221)
T KOG0037|consen 55 TFPQLAGWFQSVDRDRSGRILAKELQQALSNGTWSPFSIETCRLMISMFDR-DNSGTIGFKEFKALWKYINQWRNVFRTY 133 (221)
T ss_pred ccHHHHHHHHhhCccccccccHHHHHHHhhcCCCCCCCHHHHHHHHHHhcC-CCCCccCHHHHHHHHHHHHHHHHHHHhc
Confidence 577899999999999999999999999998544 46899999999999999 9999999999999999999999999999
Q ss_pred cCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCCCCCcccchHHHHHHHHHHHHHHHHhhhcCCCCCceeeec
Q 025714 154 DRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYDNRSGSRKLGLSFDSFVECGMVVKGLTEKFKEKDPRYTGSATLT 233 (249)
Q Consensus 154 D~d~~G~I~~~el~~~l~~~g~~l~~~~~~~l~~~~d~~~~~~~g~i~~~eF~~~l~~~~~~~~~f~~~d~~~~G~i~~~ 233 (249)
|.|++|+|+..||+++|..+|+.|+++.++.++++++.. .+|.|.|++|++|++.|+.+.++|+.+|++.+|.|+++
T Consensus 134 D~D~SG~I~~sEL~~Al~~~Gy~Lspq~~~~lv~kyd~~---~~g~i~FD~FI~ccv~L~~lt~~Fr~~D~~q~G~i~~~ 210 (221)
T KOG0037|consen 134 DRDRSGTIDSSELRQALTQLGYRLSPQFYNLLVRKYDRF---GGGRIDFDDFIQCCVVLQRLTEAFRRRDTAQQGSITIS 210 (221)
T ss_pred ccCCCCcccHHHHHHHHHHcCcCCCHHHHHHHHHHhccc---cCCceeHHHHHHHHHHHHHHHHHHHHhccccceeEEEe
Confidence 999999999999999999999999999999999999986 68999999999999999999999999999999999999
Q ss_pred HHHHHHHHhh
Q 025714 234 YESFMSIVIP 243 (249)
Q Consensus 234 ~~~~~~~~~~ 243 (249)
+++|+.++++
T Consensus 211 y~dfl~~t~~ 220 (221)
T KOG0037|consen 211 YDDFLQMTMS 220 (221)
T ss_pred HHHHHHHhhc
Confidence 9999998865
No 2
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.95 E-value=1.9e-26 Score=173.87 Aligned_cols=139 Identities=24% Similarity=0.345 Sum_probs=131.7
Q ss_pred CCCCCCCCCchHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCcccCHHHHHHHHHc----
Q 025714 67 GHSAFPPGTHPDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSC---- 142 (249)
Q Consensus 67 ~~~~l~~~~~~~l~~~F~~~D~d~~g~I~~~el~~~l~~lg~~~s~~~~~~l~~~~d~~~~~g~i~~~eF~~~~~~---- 142 (249)
....|+.+++++|+++|..+|+|++|.|+..+|.++++.+|..++..++.+++..++. +.+.|+|.+|+.++..
T Consensus 10 ~~~~~t~~qi~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~--~~~~idf~~Fl~~ms~~~~~ 87 (160)
T COG5126 10 TFTQLTEEQIQELKEAFQLFDRDSDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDA--GNETVDFPEFLTVMSVKLKR 87 (160)
T ss_pred hcccCCHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHcCCCCcHHHHHHHHHhccC--CCCccCHHHHHHHHHHHhcc
Confidence 3557999999999999999999999999999999999999999999999999999985 7799999999999865
Q ss_pred ---HHHHHHHHHHHcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCCCCCcccchHHHHHHHH
Q 025714 143 ---LGQWRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYDNRSGSRKLGLSFDSFVECGM 210 (249)
Q Consensus 143 ---~~~~~~~F~~~D~d~~G~I~~~el~~~l~~~g~~l~~~~~~~l~~~~d~~~~~~~g~i~~~eF~~~l~ 210 (249)
.++++++|+.||+|++|+|+..||+.+|+.+|+.+++++++++++.++.+ ++|.|+|++|+..+.
T Consensus 88 ~~~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lge~~~deev~~ll~~~d~d---~dG~i~~~eF~~~~~ 155 (160)
T COG5126 88 GDKEEELREAFKLFDKDHDGYISIGELRRVLKSLGERLSDEEVEKLLKEYDED---GDGEIDYEEFKKLIK 155 (160)
T ss_pred CCcHHHHHHHHHHhCCCCCceecHHHHHHHHHhhcccCCHHHHHHHHHhcCCC---CCceEeHHHHHHHHh
Confidence 47999999999999999999999999999999999999999999999999 999999999998654
No 3
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.93 E-value=5.4e-25 Score=168.50 Aligned_cols=136 Identities=24% Similarity=0.291 Sum_probs=129.3
Q ss_pred CCCCCchHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCcccCHHHHHHHHHcH-------
Q 025714 71 FPPGTHPDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCL------- 143 (249)
Q Consensus 71 l~~~~~~~l~~~F~~~D~d~~g~I~~~el~~~l~~lg~~~s~~~~~~l~~~~d~~~~~g~i~~~eF~~~~~~~------- 143 (249)
++.+++.+++++|..+|.+++|+|+..||..+++.+|..++..++..++..+|. +++|.|+|++|+.++...
T Consensus 2 ~~~~~~~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~-dg~g~I~~~eF~~l~~~~~~~~~~~ 80 (151)
T KOG0027|consen 2 LSEEQILELKEAFQLFDKDGDGKISVEELGAVLRSLGQNPTEEELRDLIKEIDL-DGDGTIDFEEFLDLMEKLGEEKTDE 80 (151)
T ss_pred CCHHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCC-CCCCeEcHHHHHHHHHhhhcccccc
Confidence 456778999999999999999999999999999999999999999999999999 999999999999998753
Q ss_pred ----HHHHHHHHHHcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCCCCCcccchHHHHHHHH
Q 025714 144 ----GQWRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYDNRSGSRKLGLSFDSFVECGM 210 (249)
Q Consensus 144 ----~~~~~~F~~~D~d~~G~I~~~el~~~l~~~g~~l~~~~~~~l~~~~d~~~~~~~g~i~~~eF~~~l~ 210 (249)
+.++.+|+.||.|++|.|+..||+.+|..+|..++.++++.+++.++.+ ++|.|+|++|+.+|.
T Consensus 81 ~~~~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg~~~~~~e~~~mi~~~d~d---~dg~i~f~ef~~~m~ 148 (151)
T KOG0027|consen 81 EASSEELKEAFRVFDKDGDGFISASELKKVLTSLGEKLTDEECKEMIREVDVD---GDGKVNFEEFVKMMS 148 (151)
T ss_pred cccHHHHHHHHHHHccCCCCcCcHHHHHHHHHHhCCcCCHHHHHHHHHhcCCC---CCCeEeHHHHHHHHh
Confidence 3899999999999999999999999999999999999999999999999 999999999999765
No 4
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.89 E-value=2e-22 Score=145.33 Aligned_cols=137 Identities=18% Similarity=0.289 Sum_probs=126.1
Q ss_pred CCCCCCCchHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCC--CCcccCHHHHHHHHHcH---
Q 025714 69 SAFPPGTHPDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPH--DSLRIGPKEFADLWSCL--- 143 (249)
Q Consensus 69 ~~l~~~~~~~l~~~F~~~D~d~~g~I~~~el~~~l~~lg~~~s~~~~~~l~~~~d~~~--~~g~i~~~eF~~~~~~~--- 143 (249)
..+++++..+++++|..||+.+||+|+..++.++|+++|.+++..++.+.+...+. + ...+|+|++|+.++..+
T Consensus 3 ~~~~~d~~~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~-~~~~~~rl~FE~fLpm~q~vakn 81 (152)
T KOG0030|consen 3 IAFTPDQMEEFKEAFLLFDRTGDGKISGSQVGDVLRALGQNPTNAEVLKVLGQPKR-REMNVKRLDFEEFLPMYQQVAKN 81 (152)
T ss_pred cccCcchHHHHHHHHHHHhccCcccccHHHHHHHHHHhcCCCcHHHHHHHHcCccc-chhhhhhhhHHHHHHHHHHHHhc
Confidence 34677888999999999999999999999999999999999999999999998877 5 45899999999998653
Q ss_pred ------HHHHHHHHHHcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCCCCCcccchHHHHHHHH
Q 025714 144 ------GQWRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYDNRSGSRKLGLSFDSFVECGM 210 (249)
Q Consensus 144 ------~~~~~~F~~~D~d~~G~I~~~el~~~l~~~g~~l~~~~~~~l~~~~d~~~~~~~g~i~~~eF~~~l~ 210 (249)
+.+.+.++.||++++|.|...||+++|.++|+.++++|++.++..... .+|.|+|+.|+..++
T Consensus 82 k~q~t~edfvegLrvFDkeg~G~i~~aeLRhvLttlGekl~eeEVe~Llag~eD----~nG~i~YE~fVk~i~ 150 (152)
T KOG0030|consen 82 KDQGTYEDFVEGLRVFDKEGNGTIMGAELRHVLTTLGEKLTEEEVEELLAGQED----SNGCINYEAFVKHIM 150 (152)
T ss_pred cccCcHHHHHHHHHhhcccCCcceeHHHHHHHHHHHHhhccHHHHHHHHccccc----cCCcCcHHHHHHHHh
Confidence 688899999999999999999999999999999999999999999877 789999999998764
No 5
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.89 E-value=4.2e-22 Score=147.14 Aligned_cols=137 Identities=19% Similarity=0.257 Sum_probs=130.5
Q ss_pred CCCCCCchHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCcccCHHHHHHHHHc-------
Q 025714 70 AFPPGTHPDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSC------- 142 (249)
Q Consensus 70 ~l~~~~~~~l~~~F~~~D~d~~g~I~~~el~~~l~~lg~~~s~~~~~~l~~~~d~~~~~g~i~~~eF~~~~~~------- 142 (249)
.+++++...++++|..||.+++|+|+.+||..+++++|+...+.++.+++..+|. ++.|.|+|++|+..+..
T Consensus 26 ~l~~~q~q~i~e~f~lfd~~~~g~iD~~EL~vAmralGFE~~k~ei~kll~d~dk-~~~g~i~fe~f~~~mt~k~~e~dt 104 (172)
T KOG0028|consen 26 ELTEEQKQEIKEAFELFDPDMAGKIDVEELKVAMRALGFEPKKEEILKLLADVDK-EGSGKITFEDFRRVMTVKLGERDT 104 (172)
T ss_pred cccHHHHhhHHHHHHhhccCCCCcccHHHHHHHHHHcCCCcchHHHHHHHHhhhh-ccCceechHHHHHHHHHHHhccCc
Confidence 4788889999999999999999999999999999999999999999999999999 99999999999988754
Q ss_pred HHHHHHHHHHHcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCCCCCcccchHHHHHHHH
Q 025714 143 LGQWRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYDNRSGSRKLGLSFDSFVECGM 210 (249)
Q Consensus 143 ~~~~~~~F~~~D~d~~G~I~~~el~~~l~~~g~~l~~~~~~~l~~~~d~~~~~~~g~i~~~eF~~~l~ 210 (249)
.++++.+|+.+|.|++|.|+..+|+.+.+.+|++++++++.+|+..++.+ ++|.|+-+||+.+|.
T Consensus 105 ~eEi~~afrl~D~D~~Gkis~~~lkrvakeLgenltD~El~eMIeEAd~d---~dgevneeEF~~imk 169 (172)
T KOG0028|consen 105 KEEIKKAFRLFDDDKTGKISQRNLKRVAKELGENLTDEELMEMIEEADRD---GDGEVNEEEFIRIMK 169 (172)
T ss_pred HHHHHHHHHcccccCCCCcCHHHHHHHHHHhCccccHHHHHHHHHHhccc---ccccccHHHHHHHHh
Confidence 47999999999999999999999999999999999999999999999999 999999999998764
No 6
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.88 E-value=9.7e-22 Score=144.14 Aligned_cols=135 Identities=21% Similarity=0.281 Sum_probs=127.2
Q ss_pred CCCCCCCCchHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCcccCHHHHHHHHHc-----
Q 025714 68 HSAFPPGTHPDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSC----- 142 (249)
Q Consensus 68 ~~~l~~~~~~~l~~~F~~~D~d~~g~I~~~el~~~l~~lg~~~s~~~~~~l~~~~d~~~~~g~i~~~eF~~~~~~----- 142 (249)
+..|+..|+.+++++|..+|.|+||.|+.++|+.+|.++|...+++++..++. ...|-|+|.-|+.++..
T Consensus 23 Famf~q~QIqEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~~~d~elDaM~~-----Ea~gPINft~FLTmfGekL~gt 97 (171)
T KOG0031|consen 23 FAMFDQSQIQEFKEAFNLMDQNRDGFIDKEDLRDMLASLGKIASDEELDAMMK-----EAPGPINFTVFLTMFGEKLNGT 97 (171)
T ss_pred HHHhhHHHHHHHHHHHHHHhccCCCcccHHHHHHHHHHcCCCCCHHHHHHHHH-----hCCCCeeHHHHHHHHHHHhcCC
Confidence 66799999999999999999999999999999999999999999999999997 66789999999999865
Q ss_pred --HHHHHHHHHHHcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCCCCCcccchHHHHHHHH
Q 025714 143 --LGQWRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYDNRSGSRKLGLSFDSFVECGM 210 (249)
Q Consensus 143 --~~~~~~~F~~~D~d~~G~I~~~el~~~l~~~g~~l~~~~~~~l~~~~d~~~~~~~g~i~~~eF~~~l~ 210 (249)
.+.+..+|+.||.+++|.|..+.|+++|..+|..+++++++.|++.+..+ ..|.|+|.+|+.++.
T Consensus 98 dpe~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~gDr~~~eEV~~m~r~~p~d---~~G~~dy~~~~~~it 164 (171)
T KOG0031|consen 98 DPEEVILNAFKTFDDEGSGKIDEDYLRELLTTMGDRFTDEEVDEMYREAPID---KKGNFDYKAFTYIIT 164 (171)
T ss_pred CHHHHHHHHHHhcCccCCCccCHHHHHHHHHHhcccCCHHHHHHHHHhCCcc---cCCceeHHHHHHHHH
Confidence 37899999999999999999999999999999999999999999999998 889999999998754
No 7
>PTZ00183 centrin; Provisional
Probab=99.88 E-value=2.4e-21 Score=149.13 Aligned_cols=140 Identities=23% Similarity=0.302 Sum_probs=130.0
Q ss_pred CCCCCCCCchHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCcccCHHHHHHHHHc-----
Q 025714 68 HSAFPPGTHPDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSC----- 142 (249)
Q Consensus 68 ~~~l~~~~~~~l~~~F~~~D~d~~g~I~~~el~~~l~~lg~~~s~~~~~~l~~~~d~~~~~g~i~~~eF~~~~~~----- 142 (249)
+..+++.++++++.+|..+|.+++|.|+..||..+++.+|..++...+..++..+|. +++|.|+++||+.++..
T Consensus 8 ~~~~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~-~~~g~i~~~eF~~~~~~~~~~~ 86 (158)
T PTZ00183 8 RPGLTEDQKKEIREAFDLFDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDK-DGSGKIDFEEFLDIMTKKLGER 86 (158)
T ss_pred cCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCC-CCCCcEeHHHHHHHHHHHhcCC
Confidence 345888899999999999999999999999999999999988899999999999999 99999999999987654
Q ss_pred --HHHHHHHHHHHcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCCCCCcccchHHHHHHHHH
Q 025714 143 --LGQWRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYDNRSGSRKLGLSFDSFVECGMV 211 (249)
Q Consensus 143 --~~~~~~~F~~~D~d~~G~I~~~el~~~l~~~g~~l~~~~~~~l~~~~d~~~~~~~g~i~~~eF~~~l~~ 211 (249)
...++.+|+.+|.+++|.|+..||+.+|..+|..++..+++.++..++.+ ++|.|+|++|+.++..
T Consensus 87 ~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~l~~~~~~~~~~~~d~~---~~g~i~~~ef~~~~~~ 154 (158)
T PTZ00183 87 DPREEILKAFRLFDDDKTGKISLKNLKRVAKELGETITDEELQEMIDEADRN---GDGEISEEEFYRIMKK 154 (158)
T ss_pred CcHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCC---CCCcCcHHHHHHHHhc
Confidence 35799999999999999999999999999999999999999999999998 8999999999997654
No 8
>PTZ00184 calmodulin; Provisional
Probab=99.87 E-value=4e-21 Score=146.28 Aligned_cols=138 Identities=20% Similarity=0.274 Sum_probs=128.1
Q ss_pred CCCCCCchHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCcccCHHHHHHHHHc-------
Q 025714 70 AFPPGTHPDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSC------- 142 (249)
Q Consensus 70 ~l~~~~~~~l~~~F~~~D~d~~g~I~~~el~~~l~~lg~~~s~~~~~~l~~~~d~~~~~g~i~~~eF~~~~~~------- 142 (249)
.+++++++.+++.|..+|.+++|.|+..||..++..++..++...+..++..+|. +++|.|++++|+.++..
T Consensus 4 ~~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~-~~~g~i~~~ef~~~l~~~~~~~~~ 82 (149)
T PTZ00184 4 QLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDA-DGNGTIDFPEFLTLMARKMKDTDS 82 (149)
T ss_pred ccCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCc-CCCCcCcHHHHHHHHHHhccCCcH
Confidence 3677888999999999999999999999999999999988889999999999999 99999999999988763
Q ss_pred HHHHHHHHHHHcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCCCCCcccchHHHHHHHHH
Q 025714 143 LGQWRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYDNRSGSRKLGLSFDSFVECGMV 211 (249)
Q Consensus 143 ~~~~~~~F~~~D~d~~G~I~~~el~~~l~~~g~~l~~~~~~~l~~~~d~~~~~~~g~i~~~eF~~~l~~ 211 (249)
...+..+|+.||.+++|.|+.+||+.+|..+|..++.++++.++..++.+ ++|.|+|+||+.++.+
T Consensus 83 ~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~---~~g~i~~~ef~~~~~~ 148 (149)
T PTZ00184 83 EEEIKEAFKVFDRDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVD---GDGQINYEEFVKMMMS 148 (149)
T ss_pred HHHHHHHHHhhCCCCCCeEeHHHHHHHHHHHCCCCCHHHHHHHHHhcCCC---CCCcCcHHHHHHHHhc
Confidence 25789999999999999999999999999999999999999999999998 8999999999988753
No 9
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=99.76 E-value=1.6e-17 Score=129.67 Aligned_cols=142 Identities=20% Similarity=0.254 Sum_probs=119.3
Q ss_pred CCCCCCCchHHHHHHHHhcCC-CCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCcc-cCHHHHHHHHHc----
Q 025714 69 SAFPPGTHPDVIRSFEMVDRD-RSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLR-IGPKEFADLWSC---- 142 (249)
Q Consensus 69 ~~l~~~~~~~l~~~F~~~D~d-~~g~I~~~el~~~l~~lg~~~s~~~~~~l~~~~d~~~~~g~-i~~~eF~~~~~~---- 142 (249)
..++..++..|.+.|..+|.+ ++|.|+.+||..+.. +..++ ..+++++.++. +++|. |+|++|+..+..
T Consensus 25 ~~fs~~EI~~L~~rF~kl~~~~~~g~lt~eef~~i~~-~~~Np---~~~rI~~~f~~-~~~~~~v~F~~Fv~~ls~f~~~ 99 (187)
T KOG0034|consen 25 TQFSANEIERLYERFKKLDRNNGDGYLTKEEFLSIPE-LALNP---LADRIIDRFDT-DGNGDPVDFEEFVRLLSVFSPK 99 (187)
T ss_pred cccCHHHHHHHHHHHHHhccccccCccCHHHHHHHHH-HhcCc---HHHHHHHHHhc-cCCCCccCHHHHHHHHhhhcCC
Confidence 348889999999999999999 999999999999993 32233 67788999998 88888 999999999865
Q ss_pred ---HHHHHHHHHHHcCCCCCcccHHHHHHHHHHc-CCCCC--HHH----HHHHHHHhcCCCCCCCcccchHHHHHHHHHH
Q 025714 143 ---LGQWRAIFERYDRDRSGKIDLMELRDALYSI-GYAVP--PSV----LQLLMDKYDNRSGSRKLGLSFDSFVECGMVV 212 (249)
Q Consensus 143 ---~~~~~~~F~~~D~d~~G~I~~~el~~~l~~~-g~~l~--~~~----~~~l~~~~d~~~~~~~g~i~~~eF~~~l~~~ 212 (249)
.++++.+|+.||.+++|.|+.+||.+++..+ +...+ ++. ++.++.++|.+ +||.|+|+||.+++...
T Consensus 100 ~~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~d---~DG~IsfeEf~~~v~~~ 176 (187)
T KOG0034|consen 100 ASKREKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDIVDKTFEEADTD---GDGKISFEEFCKVVEKQ 176 (187)
T ss_pred ccHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHhCCC---CCCcCcHHHHHHHHHcC
Confidence 2599999999999999999999999999986 43444 443 56678889999 99999999999998876
Q ss_pred HHHHHH
Q 025714 213 KGLTEK 218 (249)
Q Consensus 213 ~~~~~~ 218 (249)
+.+.+.
T Consensus 177 P~~~~~ 182 (187)
T KOG0034|consen 177 PDLLEK 182 (187)
T ss_pred ccHHHH
Confidence 555554
No 10
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.74 E-value=4.6e-17 Score=127.17 Aligned_cols=149 Identities=17% Similarity=0.210 Sum_probs=125.5
Q ss_pred CCCCCchHHHHHHHHhcCCC-CCcccHHHHHHHHHhcCC-CCCHHHHHHHHHHhcCCCCCcccCHHHHHHHHHcH-----
Q 025714 71 FPPGTHPDVIRSFEMVDRDR-SGFIDENELQQALSSGYQ-RFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCL----- 143 (249)
Q Consensus 71 l~~~~~~~l~~~F~~~D~d~-~g~I~~~el~~~l~~lg~-~~s~~~~~~l~~~~d~~~~~g~i~~~eF~~~~~~~----- 143 (249)
.+.-...+++++++.|-.++ +|.++.++|+.++++++- .-+...++.+|+.+|. +++|.|+|.||+..++..
T Consensus 20 ~t~f~~~ei~~~Yr~Fk~~cP~G~~~~~~F~~i~~~~fp~gd~~~y~~~vF~~fD~-~~dg~i~F~Efi~als~~~rGt~ 98 (193)
T KOG0044|consen 20 QTKFSKKEIQQWYRGFKNECPSGRLTLEEFREIYASFFPDGDASKYAELVFRTFDK-NKDGTIDFLEFICALSLTSRGTL 98 (193)
T ss_pred hcCCCHHHHHHHHHHhcccCCCCccCHHHHHHHHHHHCCCCCHHHHHHHHHHHhcc-cCCCCcCHHHHHHHHHHHcCCcH
Confidence 44455667777777777766 999999999999998764 5667788999999999 999999999999888753
Q ss_pred -HHHHHHHHHHcCCCCCcccHHHHHHHHHHc----CC-------CCCHHHHHHHHHHhcCCCCCCCcccchHHHHHHHHH
Q 025714 144 -GQWRAIFERYDRDRSGKIDLMELRDALYSI----GY-------AVPPSVLQLLMDKYDNRSGSRKLGLSFDSFVECGMV 211 (249)
Q Consensus 144 -~~~~~~F~~~D~d~~G~I~~~el~~~l~~~----g~-------~l~~~~~~~l~~~~d~~~~~~~g~i~~~eF~~~l~~ 211 (249)
+.++.+|++||.|++|+|+++|+.++++.+ |- ...++.++.+|+++|.+ +||.|+++||+..+..
T Consensus 99 eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n---~Dg~lT~eef~~~~~~ 175 (193)
T KOG0044|consen 99 EEKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMDKN---KDGKLTLEEFIEGCKA 175 (193)
T ss_pred HHHhhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHcCCC---CCCcccHHHHHHHhhh
Confidence 789999999999999999999999998863 31 23456689999999999 9999999999999998
Q ss_pred HHHHHHHhhhcC
Q 025714 212 VKGLTEKFKEKD 223 (249)
Q Consensus 212 ~~~~~~~f~~~d 223 (249)
.+.+.+++....
T Consensus 176 d~~i~~~l~~~~ 187 (193)
T KOG0044|consen 176 DPSILRALEQDP 187 (193)
T ss_pred CHHHHHHhhhcc
Confidence 888888776544
No 11
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=99.68 E-value=9.9e-16 Score=129.23 Aligned_cols=158 Identities=15% Similarity=0.175 Sum_probs=137.2
Q ss_pred CCCCCCchHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCC-CCHHHHHHHHHHhcCCCCCcccCHHHHHHHHH-cHHHHH
Q 025714 70 AFPPGTHPDVIRSFEMVDRDRSGFIDENELQQALSSGYQR-FSLSTIRLLMFLFRNPHDSLRIGPKEFADLWS-CLGQWR 147 (249)
Q Consensus 70 ~l~~~~~~~l~~~F~~~D~d~~g~I~~~el~~~l~~lg~~-~s~~~~~~l~~~~d~~~~~g~i~~~eF~~~~~-~~~~~~ 147 (249)
.+.++...+++.+|+.+|.+++|.|+..++.+.+.++.+. ........++...|. +.+|.|+|+||...+. .+.++.
T Consensus 7 ~~~~er~~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~-~~dg~vDy~eF~~Y~~~~E~~l~ 85 (463)
T KOG0036|consen 7 ETDEERDIRIRCLFKELDSKNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDA-NRDGRVDYSEFKRYLDNKELELY 85 (463)
T ss_pred CCcHHHHHHHHHHHHHhccCCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhccc-CcCCcccHHHHHHHHHHhHHHHH
Confidence 4556667789999999999999999999999999999887 777888999999999 9999999999998875 467899
Q ss_pred HHHHHHcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCCCCCcccchHHHHHHHHHH-----HHH---HHHh
Q 025714 148 AIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYDNRSGSRKLGLSFDSFVECGMVV-----KGL---TEKF 219 (249)
Q Consensus 148 ~~F~~~D~d~~G~I~~~el~~~l~~~g~~l~~~~~~~l~~~~d~~~~~~~g~i~~~eF~~~l~~~-----~~~---~~~f 219 (249)
.+|...|.+.||.|+.+|+.+.|+.+|..+++++++++++.+|.+ +++.|+++||.++++.. +.+ .+.+
T Consensus 86 ~~F~~iD~~hdG~i~~~Ei~~~l~~~gi~l~de~~~k~~e~~d~~---g~~~I~~~e~rd~~ll~p~s~i~di~~~W~h~ 162 (463)
T KOG0036|consen 86 RIFQSIDLEHDGKIDPNEIWRYLKDLGIQLSDEKAAKFFEHMDKD---GKATIDLEEWRDHLLLYPESDLEDIYDFWRHV 162 (463)
T ss_pred HHHhhhccccCCccCHHHHHHHHHHhCCccCHHHHHHHHHHhccC---CCeeeccHHHHhhhhcCChhHHHHHHHhhhhh
Confidence 999999999999999999999999999999999999999999999 99999999999987753 222 2333
Q ss_pred hhcCCCCCceee
Q 025714 220 KEKDPRYTGSAT 231 (249)
Q Consensus 220 ~~~d~~~~G~i~ 231 (249)
..+|-+.+..|.
T Consensus 163 ~~idigE~~~iP 174 (463)
T KOG0036|consen 163 LLIDIGEDAVLP 174 (463)
T ss_pred eEEEccccccCC
Confidence 356666666553
No 12
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=99.60 E-value=7.9e-15 Score=114.40 Aligned_cols=90 Identities=30% Similarity=0.372 Sum_probs=82.1
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCcccCHHHHHHHHHcHHHHHHHHHHHcCCC
Q 025714 78 DVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCLGQWRAIFERYDRDR 157 (249)
Q Consensus 78 ~l~~~F~~~D~d~~g~I~~~el~~~l~~lg~~~s~~~~~~l~~~~d~~~~~g~i~~~eF~~~~~~~~~~~~~F~~~D~d~ 157 (249)
.|+.+|+.+|+|++|+|+..||+.+|..+|+.+++...+.|++++|. .++|.|.|++|+.+|..++.+.++|+.+|.+.
T Consensus 125 ~Wr~vF~~~D~D~SG~I~~sEL~~Al~~~Gy~Lspq~~~~lv~kyd~-~~~g~i~FD~FI~ccv~L~~lt~~Fr~~D~~q 203 (221)
T KOG0037|consen 125 QWRNVFRTYDRDRSGTIDSSELRQALTQLGYRLSPQFYNLLVRKYDR-FGGGRIDFDDFIQCCVVLQRLTEAFRRRDTAQ 203 (221)
T ss_pred HHHHHHHhcccCCCCcccHHHHHHHHHHcCcCCCHHHHHHHHHHhcc-ccCCceeHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 78899999999999999999999999999999999999999999997 77999999999999999999999999999998
Q ss_pred CCcccH--HHHHH
Q 025714 158 SGKIDL--MELRD 168 (249)
Q Consensus 158 ~G~I~~--~el~~ 168 (249)
.|.|+. ++|..
T Consensus 204 ~G~i~~~y~dfl~ 216 (221)
T KOG0037|consen 204 QGSITISYDDFLQ 216 (221)
T ss_pred ceeEEEeHHHHHH
Confidence 887654 45543
No 13
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.51 E-value=7.6e-13 Score=101.19 Aligned_cols=125 Identities=18% Similarity=0.278 Sum_probs=107.1
Q ss_pred HHHHHHHHHHhcCCCCCcccCHHHHHHHHHcH------HHHHHHHHHHcCCCCCcccHHHHHHHHHHcCCCC-----CHH
Q 025714 112 LSTIRLLMFLFRNPHDSLRIGPKEFADLWSCL------GQWRAIFERYDRDRSGKIDLMELRDALYSIGYAV-----PPS 180 (249)
Q Consensus 112 ~~~~~~l~~~~d~~~~~g~i~~~eF~~~~~~~------~~~~~~F~~~D~d~~G~I~~~el~~~l~~~g~~l-----~~~ 180 (249)
..++..+|..+|. +++|.|+-.|+..+++.+ .++..+++.+|.+++|.|+..||..++...+... +.+
T Consensus 7 ~~el~~~F~~fD~-d~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~~~~ 85 (151)
T KOG0027|consen 7 ILELKEAFQLFDK-DGDGKISVEELGAVLRSLGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEASSE 85 (151)
T ss_pred HHHHHHHHHHHCC-CCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccccccccHH
Confidence 3567888999999 999999999999988764 7899999999999999999999999998765432 355
Q ss_pred HHHHHHHHhcCCCCCCCcccchHHHHHHHHHH------HHHHHHhhhcCCCCCceeeecHHHHHHHHh
Q 025714 181 VLQLLMDKYDNRSGSRKLGLSFDSFVECGMVV------KGLTEKFKEKDPRYTGSATLTYESFMSIVI 242 (249)
Q Consensus 181 ~~~~l~~~~d~~~~~~~g~i~~~eF~~~l~~~------~~~~~~f~~~d~~~~G~i~~~~~~~~~~~~ 242 (249)
++.+.|+.+|.+ ++|.|+.+|+..+|..+ ..+...++..|.+++|.| ++++|+.++.
T Consensus 86 el~eaF~~fD~d---~~G~Is~~el~~~l~~lg~~~~~~e~~~mi~~~d~d~dg~i--~f~ef~~~m~ 148 (151)
T KOG0027|consen 86 ELKEAFRVFDKD---GDGFISASELKKVLTSLGEKLTDEECKEMIREVDVDGDGKV--NFEEFVKMMS 148 (151)
T ss_pred HHHHHHHHHccC---CCCcCcHHHHHHHHHHhCCcCCHHHHHHHHHhcCCCCCCeE--eHHHHHHHHh
Confidence 899999999999 99999999999999886 688889999999999987 5588887764
No 14
>PTZ00183 centrin; Provisional
Probab=99.51 E-value=1.2e-12 Score=100.56 Aligned_cols=125 Identities=25% Similarity=0.333 Sum_probs=107.4
Q ss_pred HHHHHHHHHhcCCCCCcccCHHHHHHHHHcH------HHHHHHHHHHcCCCCCcccHHHHHHHHHHc-CCCCCHHHHHHH
Q 025714 113 STIRLLMFLFRNPHDSLRIGPKEFADLWSCL------GQWRAIFERYDRDRSGKIDLMELRDALYSI-GYAVPPSVLQLL 185 (249)
Q Consensus 113 ~~~~~l~~~~d~~~~~g~i~~~eF~~~~~~~------~~~~~~F~~~D~d~~G~I~~~el~~~l~~~-g~~l~~~~~~~l 185 (249)
.++..+|..+|. +++|.|+++||..++..+ ..+..+|+.+|.+++|.|+..||..++... ......+.++.+
T Consensus 17 ~~~~~~F~~~D~-~~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~~ 95 (158)
T PTZ00183 17 KEIREAFDLFDT-DGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDPREEILKA 95 (158)
T ss_pred HHHHHHHHHhCC-CCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 456777888999 999999999999888742 578999999999999999999999988753 344677889999
Q ss_pred HHHhcCCCCCCCcccchHHHHHHHHHH------HHHHHHhhhcCCCCCceeeecHHHHHHHHhh
Q 025714 186 MDKYDNRSGSRKLGLSFDSFVECGMVV------KGLTEKFKEKDPRYTGSATLTYESFMSIVIP 243 (249)
Q Consensus 186 ~~~~d~~~~~~~g~i~~~eF~~~l~~~------~~~~~~f~~~d~~~~G~i~~~~~~~~~~~~~ 243 (249)
|+.+|.+ ++|.|+.+||..++..+ ..+..+|..+|.+++|. +++++|+.++..
T Consensus 96 F~~~D~~---~~G~i~~~e~~~~l~~~~~~l~~~~~~~~~~~~d~~~~g~--i~~~ef~~~~~~ 154 (158)
T PTZ00183 96 FRLFDDD---KTGKISLKNLKRVAKELGETITDEELQEMIDEADRNGDGE--ISEEEFYRIMKK 154 (158)
T ss_pred HHHhCCC---CCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCc--CcHHHHHHHHhc
Confidence 9999999 99999999999998753 57889999999999996 688889887754
No 15
>PLN02964 phosphatidylserine decarboxylase
Probab=99.47 E-value=4.2e-13 Score=122.37 Aligned_cols=114 Identities=18% Similarity=0.237 Sum_probs=100.8
Q ss_pred CCCCCCCchHHHHHHHHhcCCCCCcccHHHHHHHHHhcC-CCCCHHH---HHHHHHHhcCCCCCcccCHHHHHHHHHcH-
Q 025714 69 SAFPPGTHPDVIRSFEMVDRDRSGFIDENELQQALSSGY-QRFSLST---IRLLMFLFRNPHDSLRIGPKEFADLWSCL- 143 (249)
Q Consensus 69 ~~l~~~~~~~l~~~F~~~D~d~~g~I~~~el~~~l~~lg-~~~s~~~---~~~l~~~~d~~~~~g~i~~~eF~~~~~~~- 143 (249)
..++..++++++++|..+|.|++|+| +..+++++| ..++..+ ++.++..+|. +++|.|+++||+.++..+
T Consensus 135 t~f~~kqi~elkeaF~lfD~dgdG~i----Lg~ilrslG~~~pte~e~~fi~~mf~~~D~-DgdG~IdfdEFl~lL~~lg 209 (644)
T PLN02964 135 FDFVTQEPESACESFDLLDPSSSNKV----VGSIFVSCSIEDPVETERSFARRILAIVDY-DEDGQLSFSEFSDLIKAFG 209 (644)
T ss_pred hhccHHHHHHHHHHHHHHCCCCCCcC----HHHHHHHhCCCCCCHHHHHHHHHHHHHhCC-CCCCeEcHHHHHHHHHHhc
Confidence 56788899999999999999999997 899999999 5888876 8999999999 999999999999988653
Q ss_pred -----HHHHHHHHHHcCCCCCcccHHHHHHHHHH-------------cCCCCCH-HHHHHHHH
Q 025714 144 -----GQWRAIFERYDRDRSGKIDLMELRDALYS-------------IGYAVPP-SVLQLLMD 187 (249)
Q Consensus 144 -----~~~~~~F~~~D~d~~G~I~~~el~~~l~~-------------~g~~l~~-~~~~~l~~ 187 (249)
++++.+|+.||.|++|.|+.+||+++|.. +|..++. ++++.|+.
T Consensus 210 ~~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~~~~~~~~~~~cp~cg~~l~~~~~~~~iiH 272 (644)
T PLN02964 210 NLVAANKKEELFKAADLNGDGVVTIDELAALLALQQEQEPIINNCPVCGEALGVSDKLNAMIH 272 (644)
T ss_pred cCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHhcccCcchhhhchhhcCcccchhhHHHHHH
Confidence 57999999999999999999999999998 6766666 66676664
No 16
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.47 E-value=4e-12 Score=99.52 Aligned_cols=142 Identities=20% Similarity=0.291 Sum_probs=116.3
Q ss_pred cccHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCC-CcccCHHHHHHHHHcH-------HHHHHHHHHHcCCCCCcccHH
Q 025714 93 FIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHD-SLRIGPKEFADLWSCL-------GQWRAIFERYDRDRSGKIDLM 164 (249)
Q Consensus 93 ~I~~~el~~~l~~lg~~~s~~~~~~l~~~~d~~~~-~g~i~~~eF~~~~~~~-------~~~~~~F~~~D~d~~G~I~~~ 164 (249)
++....+..+...- .++..+++.+++.|-. +. .|.++.++|..+++.. .-...+|+.||.|++|.|+..
T Consensus 8 ~~~~~~~e~l~~~t--~f~~~ei~~~Yr~Fk~-~cP~G~~~~~~F~~i~~~~fp~gd~~~y~~~vF~~fD~~~dg~i~F~ 84 (193)
T KOG0044|consen 8 KLQPESLEQLVQQT--KFSKKEIQQWYRGFKN-ECPSGRLTLEEFREIYASFFPDGDASKYAELVFRTFDKNKDGTIDFL 84 (193)
T ss_pred cCCcHHHHHHHHhc--CCCHHHHHHHHHHhcc-cCCCCccCHHHHHHHHHHHCCCCCHHHHHHHHHHHhcccCCCCcCHH
Confidence 44444444444332 5788899999999888 66 9999999999998763 568889999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHhcCCCCCCCcccchHHHHHHHHHH-----------------HHHHHHhhhcCCCCC
Q 025714 165 ELRDALYSIGYAVPPSVLQLLMDKYDNRSGSRKLGLSFDSFVECGMVV-----------------KGLTEKFKEKDPRYT 227 (249)
Q Consensus 165 el~~~l~~~g~~l~~~~~~~l~~~~d~~~~~~~g~i~~~eF~~~l~~~-----------------~~~~~~f~~~d~~~~ 227 (249)
||..+|..+--...++-++-.|+.+|.+ ++|.|+++|+++++..+ +....+|+.+|.|++
T Consensus 85 Efi~als~~~rGt~eekl~w~F~lyD~d---gdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n~D 161 (193)
T KOG0044|consen 85 EFICALSLTSRGTLEEKLKWAFRLYDLD---GDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMDKNKD 161 (193)
T ss_pred HHHHHHHHHcCCcHHHHhhhhheeecCC---CCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHcCCCCC
Confidence 9988888765556677788899999999 99999999999988764 567789999999999
Q ss_pred ceeeecHHHHHHHHh
Q 025714 228 GSATLTYESFMSIVI 242 (249)
Q Consensus 228 G~i~~~~~~~~~~~~ 242 (249)
|.| |+++|+..++
T Consensus 162 g~l--T~eef~~~~~ 174 (193)
T KOG0044|consen 162 GKL--TLEEFIEGCK 174 (193)
T ss_pred Ccc--cHHHHHHHhh
Confidence 975 6777777654
No 17
>PTZ00184 calmodulin; Provisional
Probab=99.46 E-value=3.6e-12 Score=96.65 Aligned_cols=124 Identities=17% Similarity=0.252 Sum_probs=105.6
Q ss_pred HHHHHHHHHhcCCCCCcccCHHHHHHHHHcH------HHHHHHHHHHcCCCCCcccHHHHHHHHHHc-CCCCCHHHHHHH
Q 025714 113 STIRLLMFLFRNPHDSLRIGPKEFADLWSCL------GQWRAIFERYDRDRSGKIDLMELRDALYSI-GYAVPPSVLQLL 185 (249)
Q Consensus 113 ~~~~~l~~~~d~~~~~g~i~~~eF~~~~~~~------~~~~~~F~~~D~d~~G~I~~~el~~~l~~~-g~~l~~~~~~~l 185 (249)
..+...|..+|. +++|.|+++||..++..+ ..+..+|+.+|.+++|.|+.+||..++... ........+..+
T Consensus 11 ~~~~~~F~~~D~-~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~ 89 (149)
T PTZ00184 11 AEFKEAFSLFDK-DGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKDTDSEEEIKEA 89 (149)
T ss_pred HHHHHHHHHHcC-CCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcHHHHHHHH
Confidence 345677888899 999999999999887643 578999999999999999999999998764 334566788999
Q ss_pred HHHhcCCCCCCCcccchHHHHHHHHHH------HHHHHHhhhcCCCCCceeeecHHHHHHHHh
Q 025714 186 MDKYDNRSGSRKLGLSFDSFVECGMVV------KGLTEKFKEKDPRYTGSATLTYESFMSIVI 242 (249)
Q Consensus 186 ~~~~d~~~~~~~g~i~~~eF~~~l~~~------~~~~~~f~~~d~~~~G~i~~~~~~~~~~~~ 242 (249)
|..+|.+ ++|.|+.++|..++..+ +.+..+|+.+|.+++|. +++++|+.++.
T Consensus 90 F~~~D~~---~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~--i~~~ef~~~~~ 147 (149)
T PTZ00184 90 FKVFDRD---GNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQ--INYEEFVKMMM 147 (149)
T ss_pred HHhhCCC---CCCeEeHHHHHHHHHHHCCCCCHHHHHHHHHhcCCCCCCc--CcHHHHHHHHh
Confidence 9999999 89999999999988654 67888999999999996 67899987764
No 18
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.43 E-value=8.5e-12 Score=94.51 Aligned_cols=122 Identities=16% Similarity=0.233 Sum_probs=103.1
Q ss_pred HHHHHHHHhcCCCCCcccCHHHHHHHHHcH------HHHHHHHHHHcCCCCCcccHHHHHHHHHHc-CCCCCHHHHHHHH
Q 025714 114 TIRLLMFLFRNPHDSLRIGPKEFADLWSCL------GQWRAIFERYDRDRSGKIDLMELRDALYSI-GYAVPPSVLQLLM 186 (249)
Q Consensus 114 ~~~~l~~~~d~~~~~g~i~~~eF~~~~~~~------~~~~~~F~~~D~d~~G~I~~~el~~~l~~~-g~~l~~~~~~~l~ 186 (249)
+++..|..+|. +++|.|+..++..+++.+ ..+.++|..+|. |.|.|+..+|..+|... ...-+++++...|
T Consensus 21 ~lkeaF~l~D~-d~~G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~~~~~Eel~~aF 98 (160)
T COG5126 21 ELKEAFQLFDR-DSDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKLKRGDKEEELREAF 98 (160)
T ss_pred HHHHHHHHhCc-CCCCCCcHHHHHHHHHHcCCCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 45666778888 999999999999998653 688899999998 89999999999988764 3456789999999
Q ss_pred HHhcCCCCCCCcccchHHHHHHHHHH------HHHHHHhhhcCCCCCceeeecHHHHHHHHh
Q 025714 187 DKYDNRSGSRKLGLSFDSFVECGMVV------KGLTEKFKEKDPRYTGSATLTYESFMSIVI 242 (249)
Q Consensus 187 ~~~d~~~~~~~g~i~~~eF~~~l~~~------~~~~~~f~~~d~~~~G~i~~~~~~~~~~~~ 242 (249)
+.||.+ ++|.|+..+++.++..+ +.+...++.+|.+++|. +++++|...++
T Consensus 99 ~~fD~d---~dG~Is~~eL~~vl~~lge~~~deev~~ll~~~d~d~dG~--i~~~eF~~~~~ 155 (160)
T COG5126 99 KLFDKD---HDGYISIGELRRVLKSLGERLSDEEVEKLLKEYDEDGDGE--IDYEEFKKLIK 155 (160)
T ss_pred HHhCCC---CCceecHHHHHHHHHhhcccCCHHHHHHHHHhcCCCCCce--EeHHHHHHHHh
Confidence 999999 99999999999998876 78899999999999996 57777776654
No 19
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.38 E-value=1.8e-12 Score=89.48 Aligned_cols=69 Identities=16% Similarity=0.154 Sum_probs=63.8
Q ss_pred cHHHHHHHHHHHcC-CCCCcccHHHHHHHHHH-cCCCCCH-HHHHHHHHHhcCCCCCCCcccchHHHHHHHHHHH
Q 025714 142 CLGQWRAIFERYDR-DRSGKIDLMELRDALYS-IGYAVPP-SVLQLLMDKYDNRSGSRKLGLSFDSFVECGMVVK 213 (249)
Q Consensus 142 ~~~~~~~~F~~~D~-d~~G~I~~~el~~~l~~-~g~~l~~-~~~~~l~~~~d~~~~~~~g~i~~~eF~~~l~~~~ 213 (249)
.+..++.+|+.||. +++|+|+..||+.+|+. +|..++. +++++|++.+|.+ ++|.|+|+||+.+|..+.
T Consensus 6 ai~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d---~DG~I~F~EF~~l~~~l~ 77 (89)
T cd05022 6 AIETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVN---QDSKLSFEEFWELIGELA 77 (89)
T ss_pred HHHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCC---CCCCCcHHHHHHHHHHHH
Confidence 35678999999999 99999999999999999 9988998 9999999999999 999999999999888763
No 20
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.38 E-value=3.8e-12 Score=104.92 Aligned_cols=163 Identities=15% Similarity=0.191 Sum_probs=128.9
Q ss_pred CchHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCcccCHHHHHHHHHc------------
Q 025714 75 THPDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSC------------ 142 (249)
Q Consensus 75 ~~~~l~~~F~~~D~d~~g~I~~~el~~~l~~lg~~~s~~~~~~l~~~~d~~~~~g~i~~~eF~~~~~~------------ 142 (249)
...++..++..+|.+++|.|+..|+...+...-...-..++.+-+..+|. +.+|.|+|+|++.....
T Consensus 75 ~~~rl~~l~~~iD~~~Dgfv~~~El~~wi~~s~k~~v~~~~~~~~~~~d~-~~Dg~i~~eey~~~~~~~~~~~~~~~d~e 153 (325)
T KOG4223|consen 75 SQERLGKLVPKIDSDSDGFVTESELKAWIMQSQKKYVVEEAARRWDEYDK-NKDGFITWEEYLPQTYGRVDLPDEFPDEE 153 (325)
T ss_pred hHHHHHHHHhhhcCCCCCceeHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CccceeeHHHhhhhhhhcccCccccccch
Confidence 46678899999999999999999999988754333445667777888999 99999999999876542
Q ss_pred --------HHHHHHHHHHHcCCCCCcccHHHHHHHHHHc-CCCCCHHHHHHHHHHhcCCCCCCCcccchHHHHHHHHHH-
Q 025714 143 --------LGQWRAIFERYDRDRSGKIDLMELRDALYSI-GYAVPPSVLQLLMDKYDNRSGSRKLGLSFDSFVECGMVV- 212 (249)
Q Consensus 143 --------~~~~~~~F~~~D~d~~G~I~~~el~~~l~~~-g~~l~~~~~~~l~~~~d~~~~~~~g~i~~~eF~~~l~~~- 212 (249)
+..-+.-|+.-|.|++|.++++||..+|.-- ...+.+-.+.+-+..+|.| +||.|+++||+.-|-..
T Consensus 154 ~~~~~~km~~rDe~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn---~DG~I~~eEfigd~~~~~ 230 (325)
T KOG4223|consen 154 DNEEYKKMIARDEERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKN---GDGKISLEEFIGDLYSHE 230 (325)
T ss_pred hcHHHHHHHHHHHHHHhhcccCCCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccC---CCCceeHHHHHhHHhhcc
Confidence 2466778999999999999999999998532 2346667788899999999 99999999999877653
Q ss_pred ----------HHHHHHhhhcCCCCCceeeecHHHHHHHHhh
Q 025714 213 ----------KGLTEKFKEKDPRYTGSATLTYESFMSIVIP 243 (249)
Q Consensus 213 ----------~~~~~~f~~~d~~~~G~i~~~~~~~~~~~~~ 243 (249)
..-.+.+..+|+|++|++ +.++.+.-|+|
T Consensus 231 ~~~~epeWv~~Ere~F~~~~DknkDG~L--~~dEl~~WI~P 269 (325)
T KOG4223|consen 231 GNEEEPEWVLTEREQFFEFRDKNKDGKL--DGDELLDWILP 269 (325)
T ss_pred CCCCCcccccccHHHHHHHhhcCCCCcc--CHHHHhcccCC
Confidence 234477888999999985 55555544444
No 21
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.29 E-value=1.5e-10 Score=86.09 Aligned_cols=124 Identities=18% Similarity=0.245 Sum_probs=107.2
Q ss_pred HHHHHHHHHhcCCCCCcccCHHHHHHHHHc------HHHHHHHHHHHcCCCCCcccHHHHHHHHH-HcCCCCCHHHHHHH
Q 025714 113 STIRLLMFLFRNPHDSLRIGPKEFADLWSC------LGQWRAIFERYDRDRSGKIDLMELRDALY-SIGYAVPPSVLQLL 185 (249)
Q Consensus 113 ~~~~~l~~~~d~~~~~g~i~~~eF~~~~~~------~~~~~~~F~~~D~d~~G~I~~~el~~~l~-~~g~~l~~~~~~~l 185 (249)
.+++..|..++. +++|.|+.+|+...+.+ .+++..+..-+|++++|.|+.++|+..+. .+++..+.+++..+
T Consensus 33 q~i~e~f~lfd~-~~~g~iD~~EL~vAmralGFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~dt~eEi~~a 111 (172)
T KOG0028|consen 33 QEIKEAFELFDP-DMAGKIDVEELKVAMRALGFEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVKLGERDTKEEIKKA 111 (172)
T ss_pred hhHHHHHHhhcc-CCCCcccHHHHHHHHHHcCCCcchHHHHHHHHhhhhccCceechHHHHHHHHHHHhccCcHHHHHHH
Confidence 567788999998 99999999999444443 36788899999999999999999999876 57888899999999
Q ss_pred HHHhcCCCCCCCcccchHHHHHHHHHH------HHHHHHhhhcCCCCCceeeecHHHHHHHHh
Q 025714 186 MDKYDNRSGSRKLGLSFDSFVECGMVV------KGLTEKFKEKDPRYTGSATLTYESFMSIVI 242 (249)
Q Consensus 186 ~~~~d~~~~~~~g~i~~~eF~~~l~~~------~~~~~~f~~~d~~~~G~i~~~~~~~~~~~~ 242 (249)
|+.+|.+ .+|.|++.+|..++..| ..+..-....|.+++| .+++++|+..+.
T Consensus 112 frl~D~D---~~Gkis~~~lkrvakeLgenltD~El~eMIeEAd~d~dg--evneeEF~~imk 169 (172)
T KOG0028|consen 112 FRLFDDD---KTGKISQRNLKRVAKELGENLTDEELMEMIEEADRDGDG--EVNEEEFIRIMK 169 (172)
T ss_pred HHccccc---CCCCcCHHHHHHHHHHhCccccHHHHHHHHHHhcccccc--cccHHHHHHHHh
Confidence 9999999 99999999999988887 5788888899999999 578999987764
No 22
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.27 E-value=3.1e-11 Score=83.33 Aligned_cols=67 Identities=18% Similarity=0.319 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHc-CCCCC-cccHHHHHHHHHH-----cCCCCCHHHHHHHHHHhcCCCCCCCcccchHHHHHHHHHH
Q 025714 143 LGQWRAIFERYD-RDRSG-KIDLMELRDALYS-----IGYAVPPSVLQLLMDKYDNRSGSRKLGLSFDSFVECGMVV 212 (249)
Q Consensus 143 ~~~~~~~F~~~D-~d~~G-~I~~~el~~~l~~-----~g~~l~~~~~~~l~~~~d~~~~~~~g~i~~~eF~~~l~~~ 212 (249)
+..++.+|+.|| .||+| .|+.+||+.+|++ +|...++++++++++.+|.+ ++|.|+|+||+.++..+
T Consensus 7 ~~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n---~dG~v~f~eF~~li~~~ 80 (88)
T cd05027 7 MVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSD---GDGECDFQEFMAFVAMV 80 (88)
T ss_pred HHHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCC---CCCcCcHHHHHHHHHHH
Confidence 467899999998 79999 6999999999999 89889999999999999999 99999999999876654
No 23
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.27 E-value=2.2e-11 Score=79.58 Aligned_cols=62 Identities=26% Similarity=0.496 Sum_probs=54.2
Q ss_pred HHHHHHHHHcCCCCCcccHHHHHHHHHHcCCCCCHHH----HHHHHHHhcCCCCCCCcccchHHHHHHH
Q 025714 145 QWRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSV----LQLLMDKYDNRSGSRKLGLSFDSFVECG 209 (249)
Q Consensus 145 ~~~~~F~~~D~d~~G~I~~~el~~~l~~~g~~l~~~~----~~~l~~~~d~~~~~~~g~i~~~eF~~~l 209 (249)
+++.+|+.+|.|++|.|+.+||+.+++.++...+..+ ++.+++.+|.+ ++|.|+|+||+.++
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d---~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTD---GDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTT---SSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCC---CcCCCcHHHHhccC
Confidence 4789999999999999999999999999987665544 55559999999 99999999999864
No 24
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.26 E-value=2.3e-11 Score=100.40 Aligned_cols=128 Identities=20% Similarity=0.193 Sum_probs=106.0
Q ss_pred chHHHHHHHHhcCCCCCcccHHHHHHHHHhcCC-CCCHHHHHHHHHHhcCCCCCcccCHHHHHHHHHc-----------H
Q 025714 76 HPDVIRSFEMVDRDRSGFIDENELQQALSSGYQ-RFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSC-----------L 143 (249)
Q Consensus 76 ~~~l~~~F~~~D~d~~g~I~~~el~~~l~~lg~-~~s~~~~~~l~~~~d~~~~~g~i~~~eF~~~~~~-----------~ 143 (249)
+..-++.|+..|.|++|.++.+||..+|.-=-+ .+..-.|..-+...|+ +++|.|+++||+.=+.. +
T Consensus 162 ~~rDe~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dk-n~DG~I~~eEfigd~~~~~~~~~epeWv~ 240 (325)
T KOG4223|consen 162 IARDEERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDK-NGDGKISLEEFIGDLYSHEGNEEEPEWVL 240 (325)
T ss_pred HHHHHHHHhhcccCCCCcccHHHHHhccChhhcchHHHHHHHHHHhhccc-CCCCceeHHHHHhHHhhccCCCCCccccc
Confidence 445688999999999999999999999973222 2344466677788899 99999999999976533 2
Q ss_pred HHHHHHHHHHcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCCCCCcccchHHHHH
Q 025714 144 GQWRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYDNRSGSRKLGLSFDSFVE 207 (249)
Q Consensus 144 ~~~~~~F~~~D~d~~G~I~~~el~~~l~~~g~~l~~~~~~~l~~~~d~~~~~~~g~i~~~eF~~ 207 (249)
.+-...|..+|+|++|.|+.+|++..+.--+......+.+.|+...|.+ +||+||++|.+.
T Consensus 241 ~Ere~F~~~~DknkDG~L~~dEl~~WI~P~~~d~A~~EA~hL~~eaD~d---kD~kLs~eEIl~ 301 (325)
T KOG4223|consen 241 TEREQFFEFRDKNKDGKLDGDELLDWILPSEQDHAKAEARHLLHEADED---KDGKLSKEEILE 301 (325)
T ss_pred ccHHHHHHHhhcCCCCccCHHHHhcccCCCCccHHHHHHHHHhhhhccC---ccccccHHHHhh
Confidence 3455778889999999999999998887666678889999999999999 999999999876
No 25
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.24 E-value=2.8e-11 Score=83.50 Aligned_cols=68 Identities=13% Similarity=0.117 Sum_probs=63.1
Q ss_pred CchHHHHHHHHhcC-CCCCcccHHHHHHHHHh-cCCCCCH-HHHHHHHHHhcCCCCCcccCHHHHHHHHHcH
Q 025714 75 THPDVIRSFEMVDR-DRSGFIDENELQQALSS-GYQRFSL-STIRLLMFLFRNPHDSLRIGPKEFADLWSCL 143 (249)
Q Consensus 75 ~~~~l~~~F~~~D~-d~~g~I~~~el~~~l~~-lg~~~s~-~~~~~l~~~~d~~~~~g~i~~~eF~~~~~~~ 143 (249)
.+..++++|..+|+ +++|+|+..||+.+|.. +|..++. .+++.+++.+|. +++|.|+|+||+.++..+
T Consensus 6 ai~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~-d~DG~I~F~EF~~l~~~l 76 (89)
T cd05022 6 AIETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDV-NQDSKLSFEEFWELIGEL 76 (89)
T ss_pred HHHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCC-CCCCCCcHHHHHHHHHHH
Confidence 36789999999999 99999999999999998 9877888 999999999999 999999999999998764
No 26
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=99.22 E-value=4.6e-11 Score=101.94 Aligned_cols=160 Identities=22% Similarity=0.341 Sum_probs=117.0
Q ss_pred chHHHHHHHHhcCCCCCcccHHHHHHHHH------hcCC----------CCCHHHHH-HHHHHhcCCCCCcccCHHHHHH
Q 025714 76 HPDVIRSFEMVDRDRSGFIDENELQQALS------SGYQ----------RFSLSTIR-LLMFLFRNPHDSLRIGPKEFAD 138 (249)
Q Consensus 76 ~~~l~~~F~~~D~d~~g~I~~~el~~~l~------~lg~----------~~s~~~~~-~l~~~~d~~~~~g~i~~~eF~~ 138 (249)
.+.++-+|+.||.|+||.|+.+||..+.. .+|. ........ .+...|.. ++++.+++++|+.
T Consensus 232 ~~~F~IAFKMFD~dgnG~IdkeEF~~v~~li~sQ~~~g~~hrd~~tt~~s~~~~~nsaL~~yFFG~-rg~~kLs~deF~~ 310 (489)
T KOG2643|consen 232 ERNFRIAFKMFDLDGNGEIDKEEFETVQQLIRSQTSVGVRHRDHFTTGNSFKVEVNSALLTYFFGK-RGNGKLSIDEFLK 310 (489)
T ss_pred cccceeeeeeeecCCCCcccHHHHHHHHHHHHhccccceecccCccccceehhhhhhhHHHHhhcc-CCCccccHHHHHH
Confidence 34677789999999999999999988774 1221 11111111 23445688 9999999999999
Q ss_pred HHHcHH--HHHHHHHHHcCCCCCcccHHHHHHHHHHcC-CCCC--HHHHHHHHHHhcCCCCCCCcccchHHHHHHHHHH-
Q 025714 139 LWSCLG--QWRAIFERYDRDRSGKIDLMELRDALYSIG-YAVP--PSVLQLLMDKYDNRSGSRKLGLSFDSFVECGMVV- 212 (249)
Q Consensus 139 ~~~~~~--~~~~~F~~~D~d~~G~I~~~el~~~l~~~g-~~l~--~~~~~~l~~~~d~~~~~~~g~i~~~eF~~~l~~~- 212 (249)
++..++ -++.-|..+|+..+|.|+..+|..+|-.+. .+.. ...+..+-+++.. .+..|+++||..+...+
T Consensus 311 F~e~Lq~Eil~lEF~~~~~~~~g~Ise~DFA~~lL~~a~~n~~~k~~~lkrvk~kf~~----~~~gISl~Ef~~Ff~Fl~ 386 (489)
T KOG2643|consen 311 FQENLQEEILELEFERFDKGDSGAISEVDFAELLLAYAGVNSKKKHKYLKRVKEKFKD----DGKGISLQEFKAFFRFLN 386 (489)
T ss_pred HHHHHHHHHHHHHHHHhCcccccccCHHHHHHHHHHHcccchHhHHHHHHHHHHhccC----CCCCcCHHHHHHHHHHHh
Confidence 999874 477779999999999999999999887653 2221 2235566666766 34679999988876643
Q ss_pred --------------------------------------HHHHHHhhhcCCCCCceeeecHHHHHHHHh
Q 025714 213 --------------------------------------KGLTEKFKEKDPRYTGSATLTYESFMSIVI 242 (249)
Q Consensus 213 --------------------------------------~~~~~~f~~~d~~~~G~i~~~~~~~~~~~~ 242 (249)
..+.-+|..+|.|+|| +|+++||+.++.
T Consensus 387 ~l~dfd~Al~fy~~Ag~~i~~~~f~raa~~vtGveLSdhVvdvvF~IFD~N~Dg--~LS~~EFl~Vmk 452 (489)
T KOG2643|consen 387 NLNDFDIALRFYHMAGASIDEKTFQRAAKVVTGVELSDHVVDVVFTIFDENNDG--TLSHKEFLAVMK 452 (489)
T ss_pred hhhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcccccceeeeEEEEEccCCCC--cccHHHHHHHHH
Confidence 2344568889999999 578999998764
No 27
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=99.22 E-value=1.9e-10 Score=98.36 Aligned_cols=125 Identities=20% Similarity=0.252 Sum_probs=103.4
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHh-cCCCCCHHHHHHHHHHhcCCCCCcccCHHHHHHHHHc--------------
Q 025714 78 DVIRSFEMVDRDRSGFIDENELQQALSS-GYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSC-------------- 142 (249)
Q Consensus 78 ~l~~~F~~~D~d~~g~I~~~el~~~l~~-lg~~~s~~~~~~l~~~~d~~~~~g~i~~~eF~~~~~~-------------- 142 (249)
++...|+.+|.+++|+|+..++..++.. +|++++-..+..-+ ... +.+|.|.+.+.+..+..
T Consensus 465 dL~~eF~~~D~~ksG~lsis~Wa~~mE~i~~L~LPWr~L~~kl--a~~-s~d~~v~Y~~~~~~l~~e~~~~ea~~slvet 541 (631)
T KOG0377|consen 465 DLEDEFRKYDPKKSGKLSISHWAKCMENITGLNLPWRLLRPKL--ANG-SDDGKVEYKSTLDNLDTEVILEEAGSSLVET 541 (631)
T ss_pred HHHHHHHhcChhhcCeeeHHHHHHHHHHHhcCCCcHHHhhhhc--cCC-CcCcceehHhHHHHhhhhhHHHHHHhHHHHH
Confidence 6778899999999999999999999985 56777654433322 233 66889999888776543
Q ss_pred ----HHHHHHHHHHHcCCCCCcccHHHHHHHHHH----cCCCCCHHHHHHHHHHhcCCCCCCCcccchHHHHHH
Q 025714 143 ----LGQWRAIFERYDRDRSGKIDLMELRDALYS----IGYAVPPSVLQLLMDKYDNRSGSRKLGLSFDSFVEC 208 (249)
Q Consensus 143 ----~~~~~~~F~~~D~d~~G~I~~~el~~~l~~----~g~~l~~~~~~~l~~~~d~~~~~~~g~i~~~eF~~~ 208 (249)
...+..+|+..|.|.+|.|+.+||+++++- +...++++++.++.+.+|.+ +||.|+++||++.
T Consensus 542 LYr~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~N---kDG~IDlNEfLeA 612 (631)
T KOG0377|consen 542 LYRNKSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLN---KDGKIDLNEFLEA 612 (631)
T ss_pred HHhchhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccC---CCCcccHHHHHHH
Confidence 246888999999999999999999999985 45679999999999999999 9999999999984
No 28
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=99.20 E-value=8.4e-11 Score=86.04 Aligned_cols=104 Identities=18% Similarity=0.218 Sum_probs=87.6
Q ss_pred HHHHHHHHhcCCCCCcccCHHHHHHHHHcH-------HHHHHHHHHHcCCCCCcccHHHHHHHHHHcC-CCCCHHHH---
Q 025714 114 TIRLLMFLFRNPHDSLRIGPKEFADLWSCL-------GQWRAIFERYDRDRSGKIDLMELRDALYSIG-YAVPPSVL--- 182 (249)
Q Consensus 114 ~~~~l~~~~d~~~~~g~i~~~eF~~~~~~~-------~~~~~~F~~~D~d~~G~I~~~el~~~l~~~g-~~l~~~~~--- 182 (249)
.-+++...+.. +|.|.++|++|+.+++.+ -++.-+|+.||-|+++.|..++|...++.+- ..++++++
T Consensus 72 fk~ri~e~FSe-DG~GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i 150 (189)
T KOG0038|consen 72 FKRRICEVFSE-DGRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELI 150 (189)
T ss_pred HHHHHHHHhcc-CCCCcccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHH
Confidence 44567788888 999999999999998754 3677899999999999999999999999873 35888876
Q ss_pred -HHHHHHhcCCCCCCCcccchHHHHHHHHHHHHHHHHhhh
Q 025714 183 -QLLMDKYDNRSGSRKLGLSFDSFVECGMVVKGLTEKFKE 221 (249)
Q Consensus 183 -~~l~~~~d~~~~~~~g~i~~~eF~~~l~~~~~~~~~f~~ 221 (249)
++++.++|.+ ++|.|++.||.+++.+-..+...|+.
T Consensus 151 ~ekvieEAD~D---gDgkl~~~eFe~~i~raPDFlsTFHI 187 (189)
T KOG0038|consen 151 CEKVIEEADLD---GDGKLSFAEFEHVILRAPDFLSTFHI 187 (189)
T ss_pred HHHHHHHhcCC---CCCcccHHHHHHHHHhCcchHhhhee
Confidence 4567778888 99999999999999888887777764
No 29
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=99.20 E-value=1.5e-10 Score=79.93 Aligned_cols=69 Identities=20% Similarity=0.409 Sum_probs=61.9
Q ss_pred cHHHHHHHHHHHcC-CC-CCcccHHHHHHHHH---HcCCCCCHHHHHHHHHHhcCCCCCCCcccchHHHHHHHHHHH
Q 025714 142 CLGQWRAIFERYDR-DR-SGKIDLMELRDALY---SIGYAVPPSVLQLLMDKYDNRSGSRKLGLSFDSFVECGMVVK 213 (249)
Q Consensus 142 ~~~~~~~~F~~~D~-d~-~G~I~~~el~~~l~---~~g~~l~~~~~~~l~~~~d~~~~~~~g~i~~~eF~~~l~~~~ 213 (249)
.+..+..+|..||. +| +|+|+.+||+++|+ .+|..+++++++++++.+|.+ ++|.|+|+||+.++..+.
T Consensus 8 ~~~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d---~dG~Idf~EFv~lm~~l~ 81 (88)
T cd05029 8 AIGLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRN---KDQEVNFQEYVTFLGALA 81 (88)
T ss_pred HHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCC---CCCCCcHHHHHHHHHHHH
Confidence 34678889999998 67 89999999999997 379999999999999999999 999999999999887763
No 30
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.19 E-value=7.4e-11 Score=77.10 Aligned_cols=62 Identities=26% Similarity=0.375 Sum_probs=52.0
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHhcCCCCCHH----HHHHHHHHhcCCCCCcccCHHHHHHHH
Q 025714 78 DVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLS----TIRLLMFLFRNPHDSLRIGPKEFADLW 140 (249)
Q Consensus 78 ~l~~~F~~~D~d~~g~I~~~el~~~l~~lg~~~s~~----~~~~l~~~~d~~~~~g~i~~~eF~~~~ 140 (249)
.|+++|..+|.|++|.|+..||..++..++...+.. .+..+++.+|. +++|.|+++||+.++
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~-d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDT-DGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTT-TSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCC-CCcCCCcHHHHhccC
Confidence 478999999999999999999999999998766554 44445888888 888888888888764
No 31
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.16 E-value=1.8e-10 Score=79.59 Aligned_cols=68 Identities=12% Similarity=0.130 Sum_probs=62.4
Q ss_pred CchHHHHHHHHhc-CCCCC-cccHHHHHHHHHh-----cCCCCCHHHHHHHHHHhcCCCCCcccCHHHHHHHHHcH
Q 025714 75 THPDVIRSFEMVD-RDRSG-FIDENELQQALSS-----GYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCL 143 (249)
Q Consensus 75 ~~~~l~~~F~~~D-~d~~g-~I~~~el~~~l~~-----lg~~~s~~~~~~l~~~~d~~~~~g~i~~~eF~~~~~~~ 143 (249)
.+..++++|..+| +|++| .|+..||+.+|+. +|...+..+++.+++.+|. +++|.|+|+||+.++..+
T Consensus 6 ~~~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~-n~dG~v~f~eF~~li~~~ 80 (88)
T cd05027 6 AMVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDS-DGDGECDFQEFMAFVAMV 80 (88)
T ss_pred HHHHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCC-CCCCcCcHHHHHHHHHHH
Confidence 3678999999998 79999 6999999999999 8888999999999999999 999999999999887653
No 32
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.15 E-value=4.5e-10 Score=78.76 Aligned_cols=71 Identities=18% Similarity=0.273 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHcC-CC-CCcccHHHHHHHHHH-----cCCCCCHHHHHHHHHHhcCCCCCCCcccchHHHHHHHHHHHHH
Q 025714 143 LGQWRAIFERYDR-DR-SGKIDLMELRDALYS-----IGYAVPPSVLQLLMDKYDNRSGSRKLGLSFDSFVECGMVVKGL 215 (249)
Q Consensus 143 ~~~~~~~F~~~D~-d~-~G~I~~~el~~~l~~-----~g~~l~~~~~~~l~~~~d~~~~~~~g~i~~~eF~~~l~~~~~~ 215 (249)
+..++.+|+.||. |+ +|.|+..||+.+|+. +|...++++++.++..+|.+ ++|.|+|++|+.++..+..+
T Consensus 7 ~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~---~dg~I~f~eF~~l~~~~~~~ 83 (94)
T cd05031 7 MESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQN---RDGKVNFEEFVSLVAGLSIA 83 (94)
T ss_pred HHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCC---CCCcCcHHHHHHHHHHHHHH
Confidence 5678999999997 97 699999999999986 57788999999999999999 99999999999988776543
Q ss_pred H
Q 025714 216 T 216 (249)
Q Consensus 216 ~ 216 (249)
.
T Consensus 84 ~ 84 (94)
T cd05031 84 C 84 (94)
T ss_pred H
Confidence 3
No 33
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.15 E-value=1.8e-10 Score=81.08 Aligned_cols=74 Identities=12% Similarity=0.140 Sum_probs=66.8
Q ss_pred CCCCCchHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCcccCHHHHHHHHHcHHHHH
Q 025714 71 FPPGTHPDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCLGQWR 147 (249)
Q Consensus 71 l~~~~~~~l~~~F~~~D~d~~g~I~~~el~~~l~~lg~~~s~~~~~~l~~~~d~~~~~g~i~~~eF~~~~~~~~~~~ 147 (249)
++.+++..++++|..+|.|++|.|+..||..+++.++ ++..+++.++..+|. +++|.|+|+||+.++..+..+.
T Consensus 4 ls~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~--~~~~ev~~i~~~~d~-~~~g~I~~~eF~~~~~~~~~~~ 77 (96)
T smart00027 4 ISPEDKAKYEQIFRSLDKNQDGTVTGAQAKPILLKSG--LPQTLLAKIWNLADI-DNDGELDKDEFALAMHLIYRKL 77 (96)
T ss_pred CCHHHHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcC--CCHHHHHHHHHHhcC-CCCCCcCHHHHHHHHHHHHHHH
Confidence 6778899999999999999999999999999999875 688999999999999 9999999999999988665443
No 34
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.13 E-value=5.7e-10 Score=77.99 Aligned_cols=68 Identities=19% Similarity=0.379 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHc-CCCCC-cccHHHHHHHHHH-c----CCCCCHHHHHHHHHHhcCCCCCCCcccchHHHHHHHHHHH
Q 025714 143 LGQWRAIFERYD-RDRSG-KIDLMELRDALYS-I----GYAVPPSVLQLLMDKYDNRSGSRKLGLSFDSFVECGMVVK 213 (249)
Q Consensus 143 ~~~~~~~F~~~D-~d~~G-~I~~~el~~~l~~-~----g~~l~~~~~~~l~~~~d~~~~~~~g~i~~~eF~~~l~~~~ 213 (249)
+..++.+|..|| .|++| +|+..||+.+|+. + +...++.+++++++.+|.+ ++|.|+|+||+.++..+.
T Consensus 9 ~~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n---~dG~Idf~EF~~l~~~l~ 83 (93)
T cd05026 9 MDTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSN---KDNEVDFNEFVVLVAALT 83 (93)
T ss_pred HHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCC---CCCCCCHHHHHHHHHHHH
Confidence 467889999999 78998 6999999999976 3 3345888999999999999 999999999999888773
No 35
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.12 E-value=7.5e-10 Score=77.33 Aligned_cols=68 Identities=16% Similarity=0.271 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHc-CCCCC-cccHHHHHHHHHH-cCC----CCCHHHHHHHHHHhcCCCCCCCcccchHHHHHHHHHHH
Q 025714 143 LGQWRAIFERYD-RDRSG-KIDLMELRDALYS-IGY----AVPPSVLQLLMDKYDNRSGSRKLGLSFDSFVECGMVVK 213 (249)
Q Consensus 143 ~~~~~~~F~~~D-~d~~G-~I~~~el~~~l~~-~g~----~l~~~~~~~l~~~~d~~~~~~~g~i~~~eF~~~l~~~~ 213 (249)
++.++++|+.|| .+++| .|+..||+.+|+. +|. ..++++++.+++.+|.+ ++|.|+|++|+.++..+.
T Consensus 8 ~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d---~~G~I~f~eF~~l~~~~~ 82 (92)
T cd05025 8 METLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDEN---GDGEVDFQEFVVLVAALT 82 (92)
T ss_pred HHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCC---CCCcCcHHHHHHHHHHHH
Confidence 467899999997 99999 5999999999986 543 46899999999999999 999999999999877653
No 36
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.11 E-value=1e-09 Score=81.18 Aligned_cols=91 Identities=24% Similarity=0.344 Sum_probs=77.6
Q ss_pred HcHHHHHHHHHHHcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCCCCCcccchHHHHHHHHHH-------H
Q 025714 141 SCLGQWRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYDNRSGSRKLGLSFDSFVECGMVV-------K 213 (249)
Q Consensus 141 ~~~~~~~~~F~~~D~d~~G~I~~~el~~~l~~~g~~l~~~~~~~l~~~~d~~~~~~~g~i~~~eF~~~l~~~-------~ 213 (249)
..+++++++|...|.|+||.|++++|+.+|..+|...++++++.|+.+.. |-|+|--|+-++... +
T Consensus 29 ~QIqEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~~~d~elDaM~~Ea~-------gPINft~FLTmfGekL~gtdpe~ 101 (171)
T KOG0031|consen 29 SQIQEFKEAFNLMDQNRDGFIDKEDLRDMLASLGKIASDEELDAMMKEAP-------GPINFTVFLTMFGEKLNGTDPEE 101 (171)
T ss_pred HHHHHHHHHHHHHhccCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhCC-------CCeeHHHHHHHHHHHhcCCCHHH
Confidence 34689999999999999999999999999999999999999999997653 569999998766543 7
Q ss_pred HHHHHhhhcCCCCCceeeecH-HHHH
Q 025714 214 GLTEKFKEKDPRYTGSATLTY-ESFM 238 (249)
Q Consensus 214 ~~~~~f~~~d~~~~G~i~~~~-~~~~ 238 (249)
.|..+|+.+|.+++|.|.-++ .+|+
T Consensus 102 ~I~~AF~~FD~~~~G~I~~d~lre~L 127 (171)
T KOG0031|consen 102 VILNAFKTFDDEGSGKIDEDYLRELL 127 (171)
T ss_pred HHHHHHHhcCccCCCccCHHHHHHHH
Confidence 899999999999999875533 4443
No 37
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.08 E-value=1.1e-09 Score=77.03 Aligned_cols=70 Identities=17% Similarity=0.282 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCCCCCcccchHHHHHHHHHHHHHHH
Q 025714 143 LGQWRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYDNRSGSRKLGLSFDSFVECGMVVKGLTE 217 (249)
Q Consensus 143 ~~~~~~~F~~~D~d~~G~I~~~el~~~l~~~g~~l~~~~~~~l~~~~d~~~~~~~g~i~~~eF~~~l~~~~~~~~ 217 (249)
+..++.+|+.+|.|++|.|+.+||+.+|+..| +++++++.++..++.+ ++|.|+|+||+.++..+..+..
T Consensus 9 ~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~--~~~~ev~~i~~~~d~~---~~g~I~~~eF~~~~~~~~~~~~ 78 (96)
T smart00027 9 KAKYEQIFRSLDKNQDGTVTGAQAKPILLKSG--LPQTLLAKIWNLADID---NDGELDKDEFALAMHLIYRKLN 78 (96)
T ss_pred HHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcC--CCHHHHHHHHHHhcCC---CCCCcCHHHHHHHHHHHHHHHc
Confidence 46788999999999999999999999999976 7899999999999998 8999999999998887765543
No 38
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=99.07 E-value=8.5e-09 Score=80.80 Aligned_cols=129 Identities=19% Similarity=0.221 Sum_probs=104.5
Q ss_pred CCHHHHHH---HHHHhcCCC-CCcccCHHHHHHHHHcH--HHHHHHHHHHcCCCCCc-ccHHHHHHHHHHcCCCCCHH-H
Q 025714 110 FSLSTIRL---LMFLFRNPH-DSLRIGPKEFADLWSCL--GQWRAIFERYDRDRSGK-IDLMELRDALYSIGYAVPPS-V 181 (249)
Q Consensus 110 ~s~~~~~~---l~~~~d~~~-~~g~i~~~eF~~~~~~~--~~~~~~F~~~D~d~~G~-I~~~el~~~l~~~g~~l~~~-~ 181 (249)
++..++.. .|..++. . ++|.++.+||..+.... --...+++.+|.+++|. |+.++|.+.|..+......+ .
T Consensus 27 fs~~EI~~L~~rF~kl~~-~~~~g~lt~eef~~i~~~~~Np~~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~~~~~K 105 (187)
T KOG0034|consen 27 FSANEIERLYERFKKLDR-NNGDGYLTKEEFLSIPELALNPLADRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKASKREK 105 (187)
T ss_pred cCHHHHHHHHHHHHHhcc-ccccCccCHHHHHHHHHHhcCcHHHHHHHHHhccCCCCccCHHHHHHHHhhhcCCccHHHH
Confidence 44445444 4566677 6 89999999999988433 24678899999999999 99999999999876665555 8
Q ss_pred HHHHHHHhcCCCCCCCcccchHHHHHHHHHH-------------HHHHHHhhhcCCCCCceeeecHHHHHHHHhhc
Q 025714 182 LQLLMDKYDNRSGSRKLGLSFDSFVECGMVV-------------KGLTEKFKEKDPRYTGSATLTYESFMSIVIPF 244 (249)
Q Consensus 182 ~~~l~~~~d~~~~~~~g~i~~~eF~~~l~~~-------------~~~~~~f~~~d~~~~G~i~~~~~~~~~~~~~~ 244 (249)
++-.++.||.+ ++|.|+.+|+..++..+ .-+...|..+|.+++|.| ++++|..++-.+
T Consensus 106 l~faF~vYD~~---~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~d~DG~I--sfeEf~~~v~~~ 176 (187)
T KOG0034|consen 106 LRFAFRVYDLD---GDGFISREELKQILRMMVGENDDMSDEQLEDIVDKTFEEADTDGDGKI--SFEEFCKVVEKQ 176 (187)
T ss_pred HHHHHHHhcCC---CCCcCcHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHhCCCCCCcC--cHHHHHHHHHcC
Confidence 99999999999 99999999999988764 456688999999999975 777888777654
No 39
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.04 E-value=1.9e-09 Score=75.29 Aligned_cols=69 Identities=14% Similarity=0.176 Sum_probs=60.5
Q ss_pred chHHHHHHHHhc-CCCCC-cccHHHHHHHHHh-cC----CCCCHHHHHHHHHHhcCCCCCcccCHHHHHHHHHcHHH
Q 025714 76 HPDVIRSFEMVD-RDRSG-FIDENELQQALSS-GY----QRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCLGQ 145 (249)
Q Consensus 76 ~~~l~~~F~~~D-~d~~g-~I~~~el~~~l~~-lg----~~~s~~~~~~l~~~~d~~~~~g~i~~~eF~~~~~~~~~ 145 (249)
+..++++|..+| .+++| .|+..||+.+|+. +| ..++..+++.++..+|. +++|.|+|++|+.++..+..
T Consensus 8 ~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~-d~~G~I~f~eF~~l~~~~~~ 83 (92)
T cd05025 8 METLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDE-NGDGEVDFQEFVVLVAALTV 83 (92)
T ss_pred HHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCC-CCCCcCcHHHHHHHHHHHHH
Confidence 568999999997 99999 5999999999985 44 35688999999999999 99999999999998876543
No 40
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=99.04 E-value=1.9e-09 Score=70.41 Aligned_cols=61 Identities=30% Similarity=0.327 Sum_probs=55.9
Q ss_pred HHHHHHHcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCCCCCcccchHHHHHHHHHH
Q 025714 147 RAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYDNRSGSRKLGLSFDSFVECGMVV 212 (249)
Q Consensus 147 ~~~F~~~D~d~~G~I~~~el~~~l~~~g~~l~~~~~~~l~~~~d~~~~~~~g~i~~~eF~~~l~~~ 212 (249)
+.+|+.+|.|++|.|+.+|++.+++.+| ++.++++.++..++.+ ++|.|+|+||+..+..+
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g--~~~~~~~~i~~~~d~~---~~g~i~~~ef~~~~~~~ 62 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSG--LPRSVLAQIWDLADTD---KDGKLDKEEFAIAMHLI 62 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcC--CCHHHHHHHHHHhcCC---CCCcCCHHHHHHHHHHH
Confidence 5789999999999999999999999987 4899999999999998 89999999999877654
No 41
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=99.03 E-value=5.4e-09 Score=90.69 Aligned_cols=170 Identities=15% Similarity=0.278 Sum_probs=128.6
Q ss_pred CCCCCchHHHHHHH---HhcCCCCCcccHHHHHHHHHhc-CC-CCCHHHHHHHHHHhcCCCCCcccCHHHHHHHHHc---
Q 025714 71 FPPGTHPDVIRSFE---MVDRDRSGFIDENELQQALSSG-YQ-RFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSC--- 142 (249)
Q Consensus 71 l~~~~~~~l~~~F~---~~D~d~~g~I~~~el~~~l~~l-g~-~~s~~~~~~l~~~~d~~~~~g~i~~~eF~~~~~~--- 142 (249)
+...+.++++.+|. ..+.++...++.++|....-.+ +. ...++.++.+-...|. ..||.|+|+||+.+-..
T Consensus 27 lkra~~~eLr~if~~~as~e~~ge~~mt~edFv~~ylgL~~e~~~n~~~v~Lla~iaD~-tKDglisf~eF~afe~~lC~ 105 (694)
T KOG0751|consen 27 LKRADPKELRSIFLKYASIEKNGESYMTPEDFVRRYLGLYNESNFNDKIVRLLASIADQ-TKDGLISFQEFRAFESVLCA 105 (694)
T ss_pred hccCChHHHHHHHHHHhHHhhccccccCHHHHHHHHHhhcccccCChHHHHHHHhhhhh-cccccccHHHHHHHHhhccC
Confidence 44556677777775 4456777889999987765533 33 3455556666667787 99999999999876433
Q ss_pred -HHHHHHHHHHHcCCCCCcccHHHHHHHHHHcCC------CCCHHHHHHHHHHhcCCCCCCCcccchHHHHHHHHHH--H
Q 025714 143 -LGQWRAIFERYDRDRSGKIDLMELRDALYSIGY------AVPPSVLQLLMDKYDNRSGSRKLGLSFDSFVECGMVV--K 213 (249)
Q Consensus 143 -~~~~~~~F~~~D~d~~G~I~~~el~~~l~~~g~------~l~~~~~~~l~~~~d~~~~~~~g~i~~~eF~~~l~~~--~ 213 (249)
-...+.+|..||+.++|.++.+++.++...... ..+.+-+.. .|..+ ....++|.+|.++++.. +
T Consensus 106 pDal~~~aFqlFDr~~~~~vs~~~~~~if~~t~l~~~~~f~~d~efI~~---~Fg~~---~~r~~ny~~f~Q~lh~~~~E 179 (694)
T KOG0751|consen 106 PDALFEVAFQLFDRLGNGEVSFEDVADIFGQTNLHHHIPFNWDSEFIKL---HFGDI---RKRHLNYAEFTQFLHEFQLE 179 (694)
T ss_pred chHHHHHHHHHhcccCCCceehHHHHHHHhccccccCCCccCCcchHHH---HhhhH---HHHhccHHHHHHHHHHHHHH
Confidence 356788999999999999999999999987543 233333443 44444 66789999999999875 6
Q ss_pred HHHHHhhhcCCCCCceee-ecHHHHHHHHhhcccc
Q 025714 214 GLTEKFKEKDPRYTGSAT-LTYESFMSIVIPFIVS 247 (249)
Q Consensus 214 ~~~~~f~~~d~~~~G~i~-~~~~~~~~~~~~~~~~ 247 (249)
.-.++|+..|+.++|.|+ +++++.|--++.|+++
T Consensus 180 ~~~qafr~~d~~~ng~is~Ldfq~imvt~~~h~lt 214 (694)
T KOG0751|consen 180 HAEQAFREKDKAKNGFISVLDFQDIMVTIRIHLLT 214 (694)
T ss_pred HHHHHHHHhcccCCCeeeeechHhhhhhhhhhcCC
Confidence 788999999999999995 5888888888888775
No 42
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=99.03 E-value=1.9e-09 Score=74.58 Aligned_cols=67 Identities=15% Similarity=0.281 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHcC--CCCCcccHHHHHHHHHH-cCCCC----CHHHHHHHHHHhcCCCCCCCcccchHHHHHHHHHH
Q 025714 143 LGQWRAIFERYDR--DRSGKIDLMELRDALYS-IGYAV----PPSVLQLLMDKYDNRSGSRKLGLSFDSFVECGMVV 212 (249)
Q Consensus 143 ~~~~~~~F~~~D~--d~~G~I~~~el~~~l~~-~g~~l----~~~~~~~l~~~~d~~~~~~~g~i~~~eF~~~l~~~ 212 (249)
++.++.+|+.||. +++|.|+.+||+.+++. +|..+ +..+++.++..++.+ ++|.|+|++|+.++..+
T Consensus 7 ~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~---~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 7 IETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVN---KDGKVDFQEFLVLIGKL 80 (88)
T ss_pred HHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccC---CCCcCcHHHHHHHHHHH
Confidence 5678899999999 89999999999999986 56444 599999999999999 89999999999987765
No 43
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.01 E-value=2.8e-09 Score=74.70 Aligned_cols=67 Identities=15% Similarity=0.177 Sum_probs=60.5
Q ss_pred chHHHHHHHHhcC-CC-CCcccHHHHHHHHHh-----cCCCCCHHHHHHHHHHhcCCCCCcccCHHHHHHHHHcH
Q 025714 76 HPDVIRSFEMVDR-DR-SGFIDENELQQALSS-----GYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCL 143 (249)
Q Consensus 76 ~~~l~~~F~~~D~-d~-~g~I~~~el~~~l~~-----lg~~~s~~~~~~l~~~~d~~~~~g~i~~~eF~~~~~~~ 143 (249)
...++++|..+|. |+ +|.|+..||..+|+. +|..++..+++.++..+|. +++|.|+|+||+.++...
T Consensus 7 ~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~-~~dg~I~f~eF~~l~~~~ 80 (94)
T cd05031 7 MESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQ-NRDGKVNFEEFVSLVAGL 80 (94)
T ss_pred HHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCC-CCCCcCcHHHHHHHHHHH
Confidence 5678999999997 97 699999999999986 5678899999999999999 999999999999988754
No 44
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.00 E-value=2.1e-09 Score=75.17 Aligned_cols=68 Identities=16% Similarity=0.181 Sum_probs=58.9
Q ss_pred CchHHHHHHHHhc-CCCCC-cccHHHHHHHHHh-c----CCCCCHHHHHHHHHHhcCCCCCcccCHHHHHHHHHcH
Q 025714 75 THPDVIRSFEMVD-RDRSG-FIDENELQQALSS-G----YQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCL 143 (249)
Q Consensus 75 ~~~~l~~~F~~~D-~d~~g-~I~~~el~~~l~~-l----g~~~s~~~~~~l~~~~d~~~~~g~i~~~eF~~~~~~~ 143 (249)
.+..++++|..+| .|++| +|+..||+.++.. + ....+..++..+++.+|. +++|.|+|+||+.++..+
T Consensus 8 a~~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~-n~dG~Idf~EF~~l~~~l 82 (93)
T cd05026 8 AMDTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDS-NKDNEVDFNEFVVLVAAL 82 (93)
T ss_pred HHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCC-CCCCCCCHHHHHHHHHHH
Confidence 3678899999999 78998 5999999999976 3 334577899999999999 999999999999998765
No 45
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.99 E-value=4.8e-09 Score=76.39 Aligned_cols=88 Identities=19% Similarity=0.300 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCCCCCcccchHHHHHHHHHH---------H
Q 025714 143 LGQWRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYDNRSGSRKLGLSFDSFVECGMVV---------K 213 (249)
Q Consensus 143 ~~~~~~~F~~~D~d~~G~I~~~el~~~l~~~g~~l~~~~~~~l~~~~d~~~~~~~g~i~~~eF~~~l~~~---------~ 213 (249)
+.+++++|..||..+||.|+....-++||++|.+-|+.++.+.+..+..++- +-.+|+|++|+-++..+ +
T Consensus 10 ~~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~-~~~rl~FE~fLpm~q~vaknk~q~t~e 88 (152)
T KOG0030|consen 10 MEEFKEAFLLFDRTGDGKISGSQVGDVLRALGQNPTNAEVLKVLGQPKRREM-NVKRLDFEEFLPMYQQVAKNKDQGTYE 88 (152)
T ss_pred HHHHHHHHHHHhccCcccccHHHHHHHHHHhcCCCcHHHHHHHHcCcccchh-hhhhhhHHHHHHHHHHHHhccccCcHH
Confidence 3678999999999999999999999999999999999999999999887532 34789999999888765 6
Q ss_pred HHHHHhhhcCCCCCceee
Q 025714 214 GLTEKFKEKDPRYTGSAT 231 (249)
Q Consensus 214 ~~~~~f~~~d~~~~G~i~ 231 (249)
.+-+.++.+|++++|+|.
T Consensus 89 dfvegLrvFDkeg~G~i~ 106 (152)
T KOG0030|consen 89 DFVEGLRVFDKEGNGTIM 106 (152)
T ss_pred HHHHHHHhhcccCCccee
Confidence 788899999999999874
No 46
>PLN02964 phosphatidylserine decarboxylase
Probab=98.99 E-value=5.3e-09 Score=95.83 Aligned_cols=91 Identities=18% Similarity=0.168 Sum_probs=55.5
Q ss_pred HHHHHHHHHHcCCCCCcccHHHHHHHHHHcC-CCCCHHH---HHHHHHHhcCCCCCCCcccchHHHHHHHHHH------H
Q 025714 144 GQWRAIFERYDRDRSGKIDLMELRDALYSIG-YAVPPSV---LQLLMDKYDNRSGSRKLGLSFDSFVECGMVV------K 213 (249)
Q Consensus 144 ~~~~~~F~~~D~d~~G~I~~~el~~~l~~~g-~~l~~~~---~~~l~~~~d~~~~~~~g~i~~~eF~~~l~~~------~ 213 (249)
++++++|+.+|.|++|.| +..+++.+| ...++++ ++.+++.+|.+ ++|.|+|+||+.+|..+ +
T Consensus 143 ~elkeaF~lfD~dgdG~i----Lg~ilrslG~~~pte~e~~fi~~mf~~~D~D---gdG~IdfdEFl~lL~~lg~~~seE 215 (644)
T PLN02964 143 ESACESFDLLDPSSSNKV----VGSIFVSCSIEDPVETERSFARRILAIVDYD---EDGQLSFSEFSDLIKAFGNLVAAN 215 (644)
T ss_pred HHHHHHHHHHCCCCCCcC----HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCC---CCCeEcHHHHHHHHHHhccCCCHH
Confidence 456666666666666665 666666666 3555555 56666666666 66666666666666543 3
Q ss_pred HHHHHhhhcCCCCCceeeecHHHHHHHHhh
Q 025714 214 GLTEKFKEKDPRYTGSATLTYESFMSIVIP 243 (249)
Q Consensus 214 ~~~~~f~~~d~~~~G~i~~~~~~~~~~~~~ 243 (249)
.+..+|+.+|.+++|. |+.++|..++..
T Consensus 216 EL~eaFk~fDkDgdG~--Is~dEL~~vL~~ 243 (644)
T PLN02964 216 KKEELFKAADLNGDGV--VTIDELAALLAL 243 (644)
T ss_pred HHHHHHHHhCCCCCCc--CCHHHHHHHHHh
Confidence 4666666666666664 344555544433
No 47
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=98.98 E-value=3.7e-09 Score=73.11 Aligned_cols=69 Identities=20% Similarity=0.312 Sum_probs=59.5
Q ss_pred cHHHHHHHHHH-HcCCCCC-cccHHHHHHHHHHc-----CCCCCHHHHHHHHHHhcCCCCCCCcccchHHHHHHHHHHH
Q 025714 142 CLGQWRAIFER-YDRDRSG-KIDLMELRDALYSI-----GYAVPPSVLQLLMDKYDNRSGSRKLGLSFDSFVECGMVVK 213 (249)
Q Consensus 142 ~~~~~~~~F~~-~D~d~~G-~I~~~el~~~l~~~-----g~~l~~~~~~~l~~~~d~~~~~~~g~i~~~eF~~~l~~~~ 213 (249)
.+..+..+|+. +|.+++| .|+.+||+.++... +...++.+++.+++.+|.+ ++|.|+|+||+.++..+.
T Consensus 7 ~i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d---~DG~I~f~EF~~l~~~l~ 82 (89)
T cd05023 7 CIESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLN---SDGQLDFQEFLNLIGGLA 82 (89)
T ss_pred HHHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCC---CCCcCcHHHHHHHHHHHH
Confidence 35678899999 6788876 99999999999875 4457789999999999999 999999999999887763
No 48
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=98.98 E-value=2.4e-09 Score=69.91 Aligned_cols=61 Identities=20% Similarity=0.212 Sum_probs=55.9
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCcccCHHHHHHHHHcH
Q 025714 80 IRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCL 143 (249)
Q Consensus 80 ~~~F~~~D~d~~g~I~~~el~~~l~~lg~~~s~~~~~~l~~~~d~~~~~g~i~~~eF~~~~~~~ 143 (249)
+++|..+|.+++|.|+.+|+..++..+|. +..+++.++..++. +++|.|+++||+.++...
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g~--~~~~~~~i~~~~d~-~~~g~i~~~ef~~~~~~~ 62 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSGL--PRSVLAQIWDLADT-DKDGKLDKEEFAIAMHLI 62 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcCC--CHHHHHHHHHHhcC-CCCCcCCHHHHHHHHHHH
Confidence 67899999999999999999999998864 88899999999999 999999999999988643
No 49
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=98.98 E-value=2.1e-09 Score=74.45 Aligned_cols=69 Identities=14% Similarity=0.112 Sum_probs=61.0
Q ss_pred CCchHHHHHHHHhcC--CCCCcccHHHHHHHHHh-cCCC----CCHHHHHHHHHHhcCCCCCcccCHHHHHHHHHcH
Q 025714 74 GTHPDVIRSFEMVDR--DRSGFIDENELQQALSS-GYQR----FSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCL 143 (249)
Q Consensus 74 ~~~~~l~~~F~~~D~--d~~g~I~~~el~~~l~~-lg~~----~s~~~~~~l~~~~d~~~~~g~i~~~eF~~~~~~~ 143 (249)
++++.++++|..+|+ +++|.|+..||..+++. +|.. .+..++..++..+|. +++|.|+|++|+.++...
T Consensus 5 ~~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~-~~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 5 KAIETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDV-NKDGKVDFQEFLVLIGKL 80 (88)
T ss_pred HHHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhcc-CCCCcCcHHHHHHHHHHH
Confidence 467889999999999 89999999999999986 5544 458999999999999 999999999999988754
No 50
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=98.97 E-value=2.8e-09 Score=66.69 Aligned_cols=52 Identities=27% Similarity=0.409 Sum_probs=48.7
Q ss_pred CCCcccHHHHHHHHHHcCCC-CCHHHHHHHHHHhcCCCCCCCcccchHHHHHHHHH
Q 025714 157 RSGKIDLMELRDALYSIGYA-VPPSVLQLLMDKYDNRSGSRKLGLSFDSFVECGMV 211 (249)
Q Consensus 157 ~~G~I~~~el~~~l~~~g~~-l~~~~~~~l~~~~d~~~~~~~g~i~~~eF~~~l~~ 211 (249)
.+|.|+.++|+.+|..+|.. +++++++.++..+|.+ ++|.|+|+||+.++..
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~---~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTD---GDGYISFDEFISMMQR 53 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTS---SSSSEEHHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccC---CCCCCCHHHHHHHHHh
Confidence 36999999999999889999 9999999999999999 9999999999998754
No 51
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=98.97 E-value=3.7e-09 Score=72.99 Aligned_cols=68 Identities=12% Similarity=0.167 Sum_probs=61.4
Q ss_pred CchHHHHHHHHhcC-CC-CCcccHHHHHHHHH---hcCCCCCHHHHHHHHHHhcCCCCCcccCHHHHHHHHHcH
Q 025714 75 THPDVIRSFEMVDR-DR-SGFIDENELQQALS---SGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCL 143 (249)
Q Consensus 75 ~~~~l~~~F~~~D~-d~-~g~I~~~el~~~l~---~lg~~~s~~~~~~l~~~~d~~~~~g~i~~~eF~~~~~~~ 143 (249)
.+..|.++|..+|. ++ +|+|+..||+.+|. .+|..++.+++..+++.+|. +++|.|+|+||+.++..+
T Consensus 8 ~~~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~-d~dG~Idf~EFv~lm~~l 80 (88)
T cd05029 8 AIGLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDR-NKDQEVNFQEYVTFLGAL 80 (88)
T ss_pred HHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcC-CCCCCCcHHHHHHHHHHH
Confidence 46678899999998 67 89999999999996 47888999999999999999 999999999999888754
No 52
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=98.93 E-value=2.3e-08 Score=85.16 Aligned_cols=118 Identities=14% Similarity=0.153 Sum_probs=101.2
Q ss_pred HHHHHHHHHhcCCCCCcccCHHHHHHHHHcH-------HHHHHHHHHHcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHH
Q 025714 113 STIRLLMFLFRNPHDSLRIGPKEFADLWSCL-------GQWRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLL 185 (249)
Q Consensus 113 ~~~~~l~~~~d~~~~~g~i~~~eF~~~~~~~-------~~~~~~F~~~D~d~~G~I~~~el~~~l~~~g~~l~~~~~~~l 185 (249)
..++.+|+.+|. +++|.|+..+....+..+ +....+|+..|.|.+|.++.+||++.+.. .+.++..+
T Consensus 14 ~r~~~lf~~lD~-~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~-----~E~~l~~~ 87 (463)
T KOG0036|consen 14 IRIRCLFKELDS-KNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDN-----KELELYRI 87 (463)
T ss_pred HHHHHHHHHhcc-CCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHHH-----hHHHHHHH
Confidence 467889999999 999999999998777653 57889999999999999999999999874 46778899
Q ss_pred HHHhcCCCCCCCcccchHHHHHHHHHH------HHHHHHhhhcCCCCCceeeecHHHHHHHH
Q 025714 186 MDKYDNRSGSRKLGLSFDSFVECGMVV------KGLTEKFKEKDPRYTGSATLTYESFMSIV 241 (249)
Q Consensus 186 ~~~~d~~~~~~~g~i~~~eF~~~l~~~------~~~~~~f~~~d~~~~G~i~~~~~~~~~~~ 241 (249)
|..+|.+ +||.|+.+|..+.+..+ +...++|+.+|+++++.| +.++|....
T Consensus 88 F~~iD~~---hdG~i~~~Ei~~~l~~~gi~l~de~~~k~~e~~d~~g~~~I--~~~e~rd~~ 144 (463)
T KOG0036|consen 88 FQSIDLE---HDGKIDPNEIWRYLKDLGIQLSDEKAAKFFEHMDKDGKATI--DLEEWRDHL 144 (463)
T ss_pred Hhhhccc---cCCccCHHHHHHHHHHhCCccCHHHHHHHHHHhccCCCeee--ccHHHHhhh
Confidence 9999999 99999999999988865 778889999999988855 556666443
No 53
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=98.89 E-value=1.1e-08 Score=64.98 Aligned_cols=61 Identities=26% Similarity=0.447 Sum_probs=57.1
Q ss_pred HHHHHHHHcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCCCCCcccchHHHHHHH
Q 025714 146 WRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYDNRSGSRKLGLSFDSFVECG 209 (249)
Q Consensus 146 ~~~~F~~~D~d~~G~I~~~el~~~l~~~g~~l~~~~~~~l~~~~d~~~~~~~g~i~~~eF~~~l 209 (249)
+..+|+.+|.+++|.|+.+|+..+++.++...+.+.+..++..++.+ ++|.|++++|+.++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKD---GDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCC---CCCeEeHHHHHHHh
Confidence 56789999999999999999999999999999999999999999998 88999999998764
No 54
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=98.84 E-value=1e-08 Score=64.08 Aligned_cols=52 Identities=23% Similarity=0.235 Sum_probs=48.7
Q ss_pred CCCcccHHHHHHHHHhcCCC-CCHHHHHHHHHHhcCCCCCcccCHHHHHHHHHc
Q 025714 90 RSGFIDENELQQALSSGYQR-FSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSC 142 (249)
Q Consensus 90 ~~g~I~~~el~~~l~~lg~~-~s~~~~~~l~~~~d~~~~~g~i~~~eF~~~~~~ 142 (249)
.+|.|+.++|..+|..+|.. ++..+++.++..+|. +++|.|+++||+.++..
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~-~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREFDT-DGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTT-SSSSSEEHHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhccc-CCCCCCCHHHHHHHHHh
Confidence 37999999999999889999 999999999999999 99999999999998764
No 55
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=98.84 E-value=2.7e-08 Score=85.90 Aligned_cols=118 Identities=17% Similarity=0.227 Sum_probs=87.1
Q ss_pred HHHHHHHhcCCCCCcccCHHHHHHHHH-----c---------------HHHHHHH---HHHHcCCCCCcccHHHHHHHHH
Q 025714 115 IRLLMFLFRNPHDSLRIGPKEFADLWS-----C---------------LGQWRAI---FERYDRDRSGKIDLMELRDALY 171 (249)
Q Consensus 115 ~~~l~~~~d~~~~~g~i~~~eF~~~~~-----~---------------~~~~~~~---F~~~D~d~~G~I~~~el~~~l~ 171 (249)
+.++|-.++. .+.|+|++.+.+..-- . .+....+ |-.+|.|.+|.|+.++|+..-.
T Consensus 227 i~rIFy~~nr-s~tG~iti~el~~snll~~l~~l~eEed~nq~~~~FS~e~f~viy~kFweLD~Dhd~lidk~~L~ry~d 305 (493)
T KOG2562|consen 227 IQRIFYYLNR-SRTGRITIQELLRSNLLDALLELDEEEDINQVTRYFSYEHFYVIYCKFWELDTDHDGLIDKEDLKRYGD 305 (493)
T ss_pred hhhhheeeCC-ccCCceeHHHHHHhHHHHHHHHHHHHhhhhhhhhheeHHHHHHHHHHHhhhccccccccCHHHHHHHhc
Confidence 3445555566 7788888877654311 0 1244444 6777999999999999987654
Q ss_pred HcCCCCCHHHHHHHHHH----hcCCCCCCCcccchHHHHHHHHHH------HHHHHHhhhcCCCCCceeeecHHHHHH
Q 025714 172 SIGYAVPPSVLQLLMDK----YDNRSGSRKLGLSFDSFVECGMVV------KGLTEKFKEKDPRYTGSATLTYESFMS 239 (249)
Q Consensus 172 ~~g~~l~~~~~~~l~~~----~d~~~~~~~g~i~~~eF~~~l~~~------~~~~~~f~~~d~~~~G~i~~~~~~~~~ 239 (249)
. .++...++.+|+. +-.. .+|+++|++|+.++..+ ..+...|+.+|.+++|.|+...=+|++
T Consensus 306 ~---tlt~~ivdRIFs~v~r~~~~~---~eGrmdykdFv~FilA~e~k~t~~SleYwFrclDld~~G~Lt~~el~~fy 377 (493)
T KOG2562|consen 306 H---TLTERIVDRIFSQVPRGFTVK---VEGRMDYKDFVDFILAEEDKDTPASLEYWFRCLDLDGDGILTLNELRYFY 377 (493)
T ss_pred c---chhhHHHHHHHhhccccceee---ecCcccHHHHHHHHHHhccCCCccchhhheeeeeccCCCcccHHHHHHHH
Confidence 3 3678888999983 3333 67889999999999987 689999999999999999886644443
No 56
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=98.81 E-value=2.7e-08 Score=63.16 Aligned_cols=61 Identities=26% Similarity=0.340 Sum_probs=57.1
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCcccCHHHHHHHH
Q 025714 79 VIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLW 140 (249)
Q Consensus 79 l~~~F~~~D~d~~g~I~~~el~~~l~~lg~~~s~~~~~~l~~~~d~~~~~g~i~~~eF~~~~ 140 (249)
++.+|..+|.+++|.|+..|+..+++.++...+...+..++..++. +++|.|++++|+.++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDK-DGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCC-CCCCeEeHHHHHHHh
Confidence 5788999999999999999999999999999999999999999999 999999999998765
No 57
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=98.79 E-value=3.5e-08 Score=68.19 Aligned_cols=68 Identities=13% Similarity=0.184 Sum_probs=58.7
Q ss_pred CchHHHHHHHH-hcCCCCC-cccHHHHHHHHHhc-----CCCCCHHHHHHHHHHhcCCCCCcccCHHHHHHHHHcH
Q 025714 75 THPDVIRSFEM-VDRDRSG-FIDENELQQALSSG-----YQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCL 143 (249)
Q Consensus 75 ~~~~l~~~F~~-~D~d~~g-~I~~~el~~~l~~l-----g~~~s~~~~~~l~~~~d~~~~~g~i~~~eF~~~~~~~ 143 (249)
.+..|..+|.. +|.+++| .|+..||+.++..- +...+..++..+++.+|. +++|.|+|+||+.++..+
T Consensus 7 ~i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~-d~DG~I~f~EF~~l~~~l 81 (89)
T cd05023 7 CIESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDL-NSDGQLDFQEFLNLIGGL 81 (89)
T ss_pred HHHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCC-CCCCcCcHHHHHHHHHHH
Confidence 46788999998 7788876 99999999999864 335667899999999999 999999999999988754
No 58
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.78 E-value=3.3e-08 Score=68.35 Aligned_cols=67 Identities=13% Similarity=0.265 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHcCC--CCCcccHHHHHHHHH-HcCCCCC----HHHHHHHHHHhcCCCCCCCcccchHHHHHHHHHH
Q 025714 143 LGQWRAIFERYDRD--RSGKIDLMELRDALY-SIGYAVP----PSVLQLLMDKYDNRSGSRKLGLSFDSFVECGMVV 212 (249)
Q Consensus 143 ~~~~~~~F~~~D~d--~~G~I~~~el~~~l~-~~g~~l~----~~~~~~l~~~~d~~~~~~~g~i~~~eF~~~l~~~ 212 (249)
+..+..+|..|+.. .+|.|+.+||+.+|. .+|..++ +.+++.++..+|.+ ++|.|+|++|+.++..+
T Consensus 7 i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d---~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 7 IETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTN---QDGQLSFEEFLVLVIKV 80 (88)
T ss_pred HHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCC---CCCcCcHHHHHHHHHHH
Confidence 45678899999866 479999999999997 6676677 99999999999999 99999999999877653
No 59
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=98.76 E-value=9.7e-08 Score=91.96 Aligned_cols=134 Identities=15% Similarity=0.233 Sum_probs=109.7
Q ss_pred CCCCCCCCCchHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCCCC-------HHHHHHHHHHhcCCCCCcccCHHHHHHH
Q 025714 67 GHSAFPPGTHPDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFS-------LSTIRLLMFLFRNPHDSLRIGPKEFADL 139 (249)
Q Consensus 67 ~~~~l~~~~~~~l~~~F~~~D~d~~g~I~~~el~~~l~~lg~~~s-------~~~~~~l~~~~d~~~~~g~i~~~eF~~~ 139 (249)
+.+..+++++.++.-+|+-||++++|+++..+|+.+|+++|+.++ ..+++.++..+|. +.+|.|+..+|+.+
T Consensus 2243 n~~GVtEe~L~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP-~r~G~Vsl~dY~af 2321 (2399)
T KOG0040|consen 2243 NHNGVTEEQLKEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDP-NRDGYVSLQDYMAF 2321 (2399)
T ss_pred ccCCCCHHHHHHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCC-CCcCcccHHHHHHH
Confidence 356689999999999999999999999999999999999998773 2479999999999 99999999999999
Q ss_pred HHc--------HHHHHHHHHHHcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHh----cCCCC-CCCcccchHHHH
Q 025714 140 WSC--------LGQWRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKY----DNRSG-SRKLGLSFDSFV 206 (249)
Q Consensus 140 ~~~--------~~~~~~~F~~~D~d~~G~I~~~el~~~l~~~g~~l~~~~~~~l~~~~----d~~~~-~~~g~i~~~eF~ 206 (249)
|.. -.++..+|+.+|. +.-+|++.++... +|.++.+-.+.++ +...| +....|+|.+|+
T Consensus 2322 mi~~ETeNI~s~~eIE~AfraL~a-~~~yvtke~~~~~-------ltreqaefc~s~m~~~~e~~~~~s~q~~l~y~dfv 2393 (2399)
T KOG0040|consen 2322 MISKETENILSSEEIEDAFRALDA-GKPYVTKEELYQN-------LTREQAEFCMSKMKPYAETSSGRSDQVALDYKDFV 2393 (2399)
T ss_pred HHhcccccccchHHHHHHHHHhhc-CCccccHHHHHhc-------CCHHHHHHHHHHhhhhcccccCCCccccccHHHHH
Confidence 864 2589999999999 7789999998654 5677766666554 33211 134578999998
Q ss_pred HHH
Q 025714 207 ECG 209 (249)
Q Consensus 207 ~~l 209 (249)
+.+
T Consensus 2394 ~sl 2396 (2399)
T KOG0040|consen 2394 NSL 2396 (2399)
T ss_pred HHH
Confidence 854
No 60
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.76 E-value=3.4e-08 Score=71.51 Aligned_cols=63 Identities=17% Similarity=0.300 Sum_probs=55.1
Q ss_pred cHHHHHHHHHHHcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCCCCCcccchHHHHHHHHH
Q 025714 142 CLGQWRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYDNRSGSRKLGLSFDSFVECGMV 211 (249)
Q Consensus 142 ~~~~~~~~F~~~D~d~~G~I~~~el~~~l~~~g~~l~~~~~~~l~~~~d~~~~~~~g~i~~~eF~~~l~~ 211 (249)
....+..+|..+|.|++|.|+.+||..+. ....+..+..++..+|.+ ++|.||++||..++..
T Consensus 46 ~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~----l~~~e~~~~~f~~~~D~n---~Dg~IS~~Ef~~cl~~ 108 (116)
T cd00252 46 CKDPVGWMFNQLDGNYDGKLSHHELAPIR----LDPNEHCIKPFFESCDLD---KDGSISLDEWCYCFIK 108 (116)
T ss_pred HHHHHHHHHHHHCCCCCCcCCHHHHHHHH----ccchHHHHHHHHHHHCCC---CCCCCCHHHHHHHHhC
Confidence 34678999999999999999999999876 235578899999999999 9999999999998743
No 61
>PF14658 EF-hand_9: EF-hand domain
Probab=98.72 E-value=5.7e-08 Score=62.20 Aligned_cols=62 Identities=23% Similarity=0.386 Sum_probs=56.3
Q ss_pred HHHHHHcCCCCCcccHHHHHHHHHHcCC-CCCHHHHHHHHHHhcCCCCCCCcccchHHHHHHHHH
Q 025714 148 AIFERYDRDRSGKIDLMELRDALYSIGY-AVPPSVLQLLMDKYDNRSGSRKLGLSFDSFVECGMV 211 (249)
Q Consensus 148 ~~F~~~D~d~~G~I~~~el~~~l~~~g~-~l~~~~~~~l~~~~d~~~~~~~g~i~~~eF~~~l~~ 211 (249)
.+|..||.++.|.|...+|+.+|++++- ..++.+++.+.+.+|.++ .+|.|++++|...|..
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g--~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEG--RDGSVNFDTFLAIMRD 64 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCC--CCceEeHHHHHHHHHH
Confidence 3799999999999999999999999988 789999999999999983 4599999999998754
No 62
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=98.69 E-value=4.8e-08 Score=75.51 Aligned_cols=101 Identities=18% Similarity=0.176 Sum_probs=82.4
Q ss_pred CCCCCCCCchHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCcccCHHHHHHHHHcH----
Q 025714 68 HSAFPPGTHPDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCL---- 143 (249)
Q Consensus 68 ~~~l~~~~~~~l~~~F~~~D~d~~g~I~~~el~~~l~~lg~~~s~~~~~~l~~~~d~~~~~g~i~~~eF~~~~~~~---- 143 (249)
++.|+..++..+..+|..+|.+.||+|+..||+.+|.+||..-+.--+..++...|. |.+|.|+|.||+-++...
T Consensus 90 F~eFsrkqIk~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVde-d~dgklSfreflLIfrkaaagE 168 (244)
T KOG0041|consen 90 FSEFSRKQIKDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDE-DFDGKLSFREFLLIFRKAAAGE 168 (244)
T ss_pred hhHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhc-ccccchhHHHHHHHHHHHhccc
Confidence 567888899999999999999999999999999999999999888899999999999 999999999999887642
Q ss_pred ----HHHHHHHHH--HcCCCCCcccHHHHHHH
Q 025714 144 ----GQWRAIFER--YDRDRSGKIDLMELRDA 169 (249)
Q Consensus 144 ----~~~~~~F~~--~D~d~~G~I~~~el~~~ 169 (249)
..+..+-+. .|...-|..-...|.++
T Consensus 169 L~~ds~~~~LAr~~eVDVskeGV~GAknFFeA 200 (244)
T KOG0041|consen 169 LQEDSGLLRLARLSEVDVSKEGVSGAKNFFEA 200 (244)
T ss_pred cccchHHHHHHHhcccchhhhhhhhHHHHHHH
Confidence 122223233 56666666666666544
No 63
>PF14658 EF-hand_9: EF-hand domain
Probab=98.69 E-value=6.4e-08 Score=62.00 Aligned_cols=61 Identities=13% Similarity=0.126 Sum_probs=56.9
Q ss_pred HHHHHhcCCCCCcccHHHHHHHHHhcCC-CCCHHHHHHHHHHhcCCCCC-cccCHHHHHHHHHc
Q 025714 81 RSFEMVDRDRSGFIDENELQQALSSGYQ-RFSLSTIRLLMFLFRNPHDS-LRIGPKEFADLWSC 142 (249)
Q Consensus 81 ~~F~~~D~d~~g~I~~~el~~~l~~lg~-~~s~~~~~~l~~~~d~~~~~-g~i~~~eF~~~~~~ 142 (249)
.+|..||.++.|.|...++..+|++++. .+.+.+++.+...+|. ++. |.|+|+.|+.+|+.
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP-~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDP-EGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCC-CCCCceEeHHHHHHHHHH
Confidence 3699999999999999999999999999 8999999999999999 886 99999999998863
No 64
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=98.65 E-value=2.9e-07 Score=79.10 Aligned_cols=110 Identities=22% Similarity=0.276 Sum_probs=65.8
Q ss_pred CCCcccCHHHHHHHHHcH----HHHHHHHHHHcCCCCCcccHHHHHHHHHH------cCC----CCC-----HHHHHH--
Q 025714 126 HDSLRIGPKEFADLWSCL----GQWRAIFERYDRDRSGKIDLMELRDALYS------IGY----AVP-----PSVLQL-- 184 (249)
Q Consensus 126 ~~~g~i~~~eF~~~~~~~----~~~~~~F~~~D~d~~G~I~~~el~~~l~~------~g~----~l~-----~~~~~~-- 184 (249)
+..|.|+|.||+-++..+ ..++-+|+.||.||||-|+.+||..+..- +|. ..+ ..+++.
T Consensus 211 g~~GLIsfSdYiFLlTlLS~p~~~F~IAFKMFD~dgnG~IdkeEF~~v~~li~sQ~~~g~~hrd~~tt~~s~~~~~nsaL 290 (489)
T KOG2643|consen 211 GESGLISFSDYIFLLTLLSIPERNFRIAFKMFDLDGNGEIDKEEFETVQQLIRSQTSVGVRHRDHFTTGNSFKVEVNSAL 290 (489)
T ss_pred CCCCeeeHHHHHHHHHHHccCcccceeeeeeeecCCCCcccHHHHHHHHHHHHhccccceecccCccccceehhhhhhhH
Confidence 556777777777666554 45666777777777777777777766531 121 011 112222
Q ss_pred HHHHhcCCCCCCCcccchHHHHHHHHHH--HHHHHHhhhcCCCCCceeeecHHHHHHH
Q 025714 185 LMDKYDNRSGSRKLGLSFDSFVECGMVV--KGLTEKFKEKDPRYTGSATLTYESFMSI 240 (249)
Q Consensus 185 l~~~~d~~~~~~~g~i~~~eF~~~l~~~--~~~~~~f~~~d~~~~G~i~~~~~~~~~~ 240 (249)
+..-|..+ +++.|++++|..++..| +.+.--|..+|+..+|.| ++.+|-.+
T Consensus 291 ~~yFFG~r---g~~kLs~deF~~F~e~Lq~Eil~lEF~~~~~~~~g~I--se~DFA~~ 343 (489)
T KOG2643|consen 291 LTYFFGKR---GNGKLSIDEFLKFQENLQEEILELEFERFDKGDSGAI--SEVDFAEL 343 (489)
T ss_pred HHHhhccC---CCccccHHHHHHHHHHHHHHHHHHHHHHhCccccccc--CHHHHHHH
Confidence 22234555 66777777777777776 355566777777777754 44444433
No 65
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.63 E-value=1.6e-07 Score=67.99 Aligned_cols=64 Identities=16% Similarity=0.099 Sum_probs=46.0
Q ss_pred CCCchHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCcccCHHHHHHHHH
Q 025714 73 PGTHPDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWS 141 (249)
Q Consensus 73 ~~~~~~l~~~F~~~D~d~~g~I~~~el~~~l~~lg~~~s~~~~~~l~~~~d~~~~~g~i~~~eF~~~~~ 141 (249)
+.....+.-+|..+|.|+||.|+.+||..+. .......+..++..+|. +++|.|+++||..++.
T Consensus 44 ~~~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~----l~~~e~~~~~f~~~~D~-n~Dg~IS~~Ef~~cl~ 107 (116)
T cd00252 44 PMCKDPVGWMFNQLDGNYDGKLSHHELAPIR----LDPNEHCIKPFFESCDL-DKDGSISLDEWCYCFI 107 (116)
T ss_pred HHHHHHHHHHHHHHCCCCCCcCCHHHHHHHH----ccchHHHHHHHHHHHCC-CCCCCCCHHHHHHHHh
Confidence 3456677778888888888888888887765 23445666777777777 7777777777777763
No 66
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=98.60 E-value=7.1e-08 Score=76.91 Aligned_cols=156 Identities=13% Similarity=0.053 Sum_probs=106.8
Q ss_pred CchHHHHHHHHhcCCCCCcccHHHHHHHHHhc-C--CCCCHHHHHHHHHHhcCCCCCcccCHHHHHHHHHcH--------
Q 025714 75 THPDVIRSFEMVDRDRSGFIDENELQQALSSG-Y--QRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCL-------- 143 (249)
Q Consensus 75 ~~~~l~~~F~~~D~d~~g~I~~~el~~~l~~l-g--~~~s~~~~~~l~~~~d~~~~~g~i~~~eF~~~~~~~-------- 143 (249)
-.+.|+.+|...|.+.||+|+..|++..+..- . +.-+..+.+..|+..|. +++|.|+++||.--+...
T Consensus 99 srrklmviFsKvDVNtDrkisAkEmqrwImektaEHfqeameeSkthFraVDp-dgDGhvsWdEykvkFlaskghsekev 177 (362)
T KOG4251|consen 99 SRRKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDP-DGDGHVSWDEYKVKFLASKGHSEKEV 177 (362)
T ss_pred HHHHHHHHHhhcccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCC-CCCCceehhhhhhHHHhhcCcchHHH
Confidence 35678999999999999999999998877632 1 12223455667888898 999999999997544220
Q ss_pred ------------HHHHHHHHHHcCCCCCcccH---------HHHHHHHHH-cCCCCCHHHHHHHHHHhcCCCCCCCcccc
Q 025714 144 ------------GQWRAIFERYDRDRSGKIDL---------MELRDALYS-IGYAVPPSVLQLLMDKYDNRSGSRKLGLS 201 (249)
Q Consensus 144 ------------~~~~~~F~~~D~d~~G~I~~---------~el~~~l~~-~g~~l~~~~~~~l~~~~d~~~~~~~g~i~ 201 (249)
.+=...|..-++++.|..+. +||..+|.- ....+-...+++++..+|.+ ++..|+
T Consensus 178 adairlneelkVDeEtqevlenlkdRwyqaDsppadlllteeEflsFLHPEhSrgmLrfmVkeivrdlDqd---gDkqlS 254 (362)
T KOG4251|consen 178 ADAIRLNEELKVDEETQEVLENLKDRWYQADSPPADLLLTEEEFLSFLHPEHSRGMLRFMVKEIVRDLDQD---GDKQLS 254 (362)
T ss_pred HHHhhccCcccccHHHHHHHHhhhhhhccccCchhhhhhhHHHHHHHcChHhhhhhHHHHHHHHHHHhccC---CCeeec
Confidence 12223344445566666655 777666531 11123345578888889999 899999
Q ss_pred hHHHHHHHHH--------------H-HHHHHHhhhcCCCCCceeeecH
Q 025714 202 FDSFVECGMV--------------V-KGLTEKFKEKDPRYTGSATLTY 234 (249)
Q Consensus 202 ~~eF~~~l~~--------------~-~~~~~~f~~~d~~~~G~i~~~~ 234 (249)
..||++...- + ...++.=..+|.+++|.+|..+
T Consensus 255 vpeFislpvGTVenqqgqdiddnwvkdRkkEFeElIDsNhDGivTaeE 302 (362)
T KOG4251|consen 255 VPEFISLPVGTVENQQGQDIDDNWVKDRKKEFEELIDSNHDGIVTAEE 302 (362)
T ss_pred chhhhcCCCcchhhhhccchHHHHHHHHHHHHHHHhhcCCccceeHHH
Confidence 9999975331 1 3445555678999999987644
No 67
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=98.59 E-value=1.1e-06 Score=76.64 Aligned_cols=160 Identities=13% Similarity=0.161 Sum_probs=113.5
Q ss_pred hHHHHHHHHhcCCCCCcccHHHHHHHHHhcC------CCCCHHHHHHHHHHhcCCCCCcccCHHHHHHHHHc--HHHHHH
Q 025714 77 PDVIRSFEMVDRDRSGFIDENELQQALSSGY------QRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSC--LGQWRA 148 (249)
Q Consensus 77 ~~l~~~F~~~D~d~~g~I~~~el~~~l~~lg------~~~s~~~~~~l~~~~d~~~~~g~i~~~eF~~~~~~--~~~~~~ 148 (249)
..++.+|+.||+.++|.++.+++.+++.+.. +..+.+.+...|. . .....++|.||..++.. ++..+.
T Consensus 108 al~~~aFqlFDr~~~~~vs~~~~~~if~~t~l~~~~~f~~d~efI~~~Fg---~-~~~r~~ny~~f~Q~lh~~~~E~~~q 183 (694)
T KOG0751|consen 108 ALFEVAFQLFDRLGNGEVSFEDVADIFGQTNLHHHIPFNWDSEFIKLHFG---D-IRKRHLNYAEFTQFLHEFQLEHAEQ 183 (694)
T ss_pred HHHHHHHHHhcccCCCceehHHHHHHHhccccccCCCccCCcchHHHHhh---h-HHHHhccHHHHHHHHHHHHHHHHHH
Confidence 4567788899998899999999988888543 2444455555443 2 44567889999888875 467999
Q ss_pred HHHHHcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCCCCCcccchHHH---HHHHHHHHHHHHHhhhcCCC
Q 025714 149 IFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYDNRSGSRKLGLSFDSF---VECGMVVKGLTEKFKEKDPR 225 (249)
Q Consensus 149 ~F~~~D~d~~G~I~~~el~~~l~~~g~~l~~~~~~~l~~~~d~~~~~~~g~i~~~eF---~~~l~~~~~~~~~f~~~d~~ 225 (249)
+|+..|+.++|.|+.-++..++-....++....+++.+-...... ....+++..| .+.|..++.+++++......
T Consensus 184 afr~~d~~~ng~is~Ldfq~imvt~~~h~lt~~v~~nlv~vagg~--~~H~vSf~yf~afnslL~~melirk~y~s~~~~ 261 (694)
T KOG0751|consen 184 AFREKDKAKNGFISVLDFQDIMVTIRIHLLTPFVEENLVSVAGGN--DSHQVSFSYFNAFNSLLNNMELIRKIYSSLAGT 261 (694)
T ss_pred HHHHhcccCCCeeeeechHhhhhhhhhhcCCHHHhhhhhhhcCCC--CccccchHHHHHHHHHHhhHHHHHHHHHHhccc
Confidence 999999999999999999999988877766666666555543321 3445655554 45566677788887766543
Q ss_pred CCceeeecHHHHHHHHhh
Q 025714 226 YTGSATLTYESFMSIVIP 243 (249)
Q Consensus 226 ~~G~i~~~~~~~~~~~~~ 243 (249)
+. -+.++++++..+.+.
T Consensus 262 ~~-d~~~~kdq~~~~a~~ 278 (694)
T KOG0751|consen 262 RK-DVEVTKDQFSLAAQT 278 (694)
T ss_pred cc-chhhhHHHHHHHHHH
Confidence 32 256788888776554
No 68
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=98.56 E-value=3.5e-07 Score=79.16 Aligned_cols=123 Identities=19% Similarity=0.217 Sum_probs=94.9
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhcC---CCCCcccCHHHHHHHHHcH------HHHHHHH
Q 025714 80 IRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRN---PHDSLRIGPKEFADLWSCL------GQWRAIF 150 (249)
Q Consensus 80 ~~~F~~~D~d~~g~I~~~el~~~l~~lg~~~s~~~~~~l~~~~d~---~~~~g~i~~~eF~~~~~~~------~~~~~~F 150 (249)
--.|-.+|+|+||.|+.++|...-.. .++...++++|...-. ...+|+++|++|+.++-.+ ..+.-.|
T Consensus 281 y~kFweLD~Dhd~lidk~~L~ry~d~---tlt~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e~k~t~~SleYwF 357 (493)
T KOG2562|consen 281 YCKFWELDTDHDGLIDKEDLKRYGDH---TLTERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEEDKDTPASLEYWF 357 (493)
T ss_pred HHHHhhhccccccccCHHHHHHHhcc---chhhHHHHHHHhhccccceeeecCcccHHHHHHHHHHhccCCCccchhhhe
Confidence 33488899999999999999877653 3567788999982211 2568999999999988654 4688899
Q ss_pred HHHcCCCCCcccHHHHHHHHHH-------cCC-CC-CHHHHHHHHHHhcCCCCCCCcccchHHHHHH
Q 025714 151 ERYDRDRSGKIDLMELRDALYS-------IGY-AV-PPSVLQLLMDKYDNRSGSRKLGLSFDSFVEC 208 (249)
Q Consensus 151 ~~~D~d~~G~I~~~el~~~l~~-------~g~-~l-~~~~~~~l~~~~d~~~~~~~g~i~~~eF~~~ 208 (249)
+.+|.+++|.|+..|++-+.+. +|. .+ -++.+.+++...... ..+.|++.+|..+
T Consensus 358 rclDld~~G~Lt~~el~~fyeeq~~rm~~~~~e~l~fed~l~qi~DMvkP~---~~~kItLqDlk~s 421 (493)
T KOG2562|consen 358 RCLDLDGDGILTLNELRYFYEEQLQRMECMGQEALPFEDALCQIRDMVKPE---DENKITLQDLKGS 421 (493)
T ss_pred eeeeccCCCcccHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHhCcc---CCCceeHHHHhhc
Confidence 9999999999999999876653 232 23 356677777777765 7789999999874
No 69
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.55 E-value=3.2e-07 Score=63.40 Aligned_cols=67 Identities=12% Similarity=0.075 Sum_probs=57.8
Q ss_pred CchHHHHHHHHhcCC--CCCcccHHHHHHHHH-hcCCCCC----HHHHHHHHHHhcCCCCCcccCHHHHHHHHHc
Q 025714 75 THPDVIRSFEMVDRD--RSGFIDENELQQALS-SGYQRFS----LSTIRLLMFLFRNPHDSLRIGPKEFADLWSC 142 (249)
Q Consensus 75 ~~~~l~~~F~~~D~d--~~g~I~~~el~~~l~-~lg~~~s----~~~~~~l~~~~d~~~~~g~i~~~eF~~~~~~ 142 (249)
.+..+...|..++.. .+|+|+..||+.+|. .++..++ ..+++.++..+|. +++|.|+|+||+.++..
T Consensus 6 ~i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~-d~dG~I~f~eF~~~~~~ 79 (88)
T cd05030 6 AIETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDT-NQDGQLSFEEFLVLVIK 79 (88)
T ss_pred HHHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCC-CCCCcCcHHHHHHHHHH
Confidence 366788999999976 478999999999997 5665566 8999999999999 99999999999988764
No 70
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.51 E-value=1.8e-07 Score=50.33 Aligned_cols=29 Identities=28% Similarity=0.688 Sum_probs=23.6
Q ss_pred HHHHHHHHHcCCCCCcccHHHHHHHHHHc
Q 025714 145 QWRAIFERYDRDRSGKIDLMELRDALYSI 173 (249)
Q Consensus 145 ~~~~~F~~~D~d~~G~I~~~el~~~l~~~ 173 (249)
+++.+|+.||+|++|.|+.+||+.++++|
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~~L 29 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMKKL 29 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHT
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHHhC
Confidence 46778888888888888888888888764
No 71
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=98.50 E-value=9.7e-07 Score=68.41 Aligned_cols=66 Identities=29% Similarity=0.404 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCCCCCcccchHHHHHHHHH
Q 025714 143 LGQWRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYDNRSGSRKLGLSFDSFVECGMV 211 (249)
Q Consensus 143 ~~~~~~~F~~~D~d~~G~I~~~el~~~l~~~g~~l~~~~~~~l~~~~d~~~~~~~g~i~~~eF~~~l~~ 211 (249)
++.+...|+.||.+.||.|+..||+.+|..+|.+-|---+..|+++.|.| .+|.|+|.+|.-+...
T Consensus 98 Ik~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded---~dgklSfreflLIfrk 163 (244)
T KOG0041|consen 98 IKDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDED---FDGKLSFREFLLIFRK 163 (244)
T ss_pred HHHHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcc---cccchhHHHHHHHHHH
Confidence 57888999999999999999999999999999988888899999999999 9999999999876554
No 72
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.48 E-value=2.5e-06 Score=58.59 Aligned_cols=74 Identities=12% Similarity=0.213 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHcCCCCCcccHHHHHHHHHH-c----CCCCCHHHHHHHHHHhcCCCCCCCcccchHHHHHHHHHHH-HHH
Q 025714 143 LGQWRAIFERYDRDRSGKIDLMELRDALYS-I----GYAVPPSVLQLLMDKYDNRSGSRKLGLSFDSFVECGMVVK-GLT 216 (249)
Q Consensus 143 ~~~~~~~F~~~D~d~~G~I~~~el~~~l~~-~----g~~l~~~~~~~l~~~~d~~~~~~~g~i~~~eF~~~l~~~~-~~~ 216 (249)
+..+..+|..|-. +.++|++.||+++|.. + +-.-.++.++++|+..|.+ +||.|+|.||+.++..+. ...
T Consensus 7 i~~lI~~FhkYaG-~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n---~Dg~vdF~EF~~Lv~~l~~ac~ 82 (91)
T cd05024 7 MEKMMLTFHKFAG-EKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDC---RDGKVGFQSFFSLIAGLLIACN 82 (91)
T ss_pred HHHHHHHHHHHcC-CCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCC---CCCcCcHHHHHHHHHHHHHHHH
Confidence 4567889999974 4579999999999974 2 4456788999999999999 999999999999888763 333
Q ss_pred HHhh
Q 025714 217 EKFK 220 (249)
Q Consensus 217 ~~f~ 220 (249)
+.|.
T Consensus 83 ~~~~ 86 (91)
T cd05024 83 DYYV 86 (91)
T ss_pred HHHH
Confidence 4443
No 73
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=98.38 E-value=1.7e-06 Score=61.46 Aligned_cols=70 Identities=13% Similarity=0.185 Sum_probs=60.9
Q ss_pred CCCCCCchHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCcccCHHHHHHHHHcH
Q 025714 70 AFPPGTHPDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCL 143 (249)
Q Consensus 70 ~l~~~~~~~l~~~F~~~D~d~~g~I~~~el~~~l~~lg~~~s~~~~~~l~~~~d~~~~~g~i~~~eF~~~~~~~ 143 (249)
.+++++...+..+|..+|. ++|.|+..+...+|..- .++.+.+..+|...|. +++|.++++||+..+...
T Consensus 3 ~ls~~e~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S--~L~~~~L~~IW~LaD~-~~dG~L~~~EF~iAm~Li 72 (104)
T PF12763_consen 3 KLSPEEKQKYDQIFQSLDP-QDGKISGDQAREFFMKS--GLPRDVLAQIWNLADI-DNDGKLDFEEFAIAMHLI 72 (104)
T ss_dssp --SCCHHHHHHHHHHCTSS-STTEEEHHHHHHHHHHT--TSSHHHHHHHHHHH-S-SSSSEEEHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCC-CCCeEeHHHHHHHHHHc--CCCHHHHHHHHhhhcC-CCCCcCCHHHHHHHHHHH
Confidence 5889999999999999985 68999999999999876 5778999999999999 999999999999887754
No 74
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.38 E-value=5.8e-07 Score=49.24 Aligned_cols=30 Identities=43% Similarity=0.721 Sum_probs=26.4
Q ss_pred HHHHHHHHHcCCCCCcccHHHHHHHHH-HcC
Q 025714 145 QWRAIFERYDRDRSGKIDLMELRDALY-SIG 174 (249)
Q Consensus 145 ~~~~~F~~~D~d~~G~I~~~el~~~l~-~~g 174 (249)
+++.+|+.||.|++|.|+.+||+.+|+ ++|
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 478899999999999999999999999 675
No 75
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.35 E-value=6.4e-07 Score=48.15 Aligned_cols=29 Identities=24% Similarity=0.423 Sum_probs=23.1
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHhc
Q 025714 78 DVIRSFEMVDRDRSGFIDENELQQALSSG 106 (249)
Q Consensus 78 ~l~~~F~~~D~d~~g~I~~~el~~~l~~l 106 (249)
+++++|+.+|+|+||+|+.+||..+++.+
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~~L 29 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMKKL 29 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHT
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHHhC
Confidence 46788888888888888888888887653
No 76
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.23 E-value=1.6e-06 Score=47.42 Aligned_cols=30 Identities=40% Similarity=0.554 Sum_probs=26.6
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHH-hcC
Q 025714 78 DVIRSFEMVDRDRSGFIDENELQQALS-SGY 107 (249)
Q Consensus 78 ~l~~~F~~~D~d~~g~I~~~el~~~l~-~lg 107 (249)
+++++|..+|.|++|+|+.+||..+|+ ++|
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 578999999999999999999999999 675
No 77
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=98.22 E-value=1.4e-06 Score=72.28 Aligned_cols=104 Identities=13% Similarity=0.073 Sum_probs=86.4
Q ss_pred HHHHHHHHHhcCCCCCcccCHHHHHHHHHc-------HHHHHHHHHHHcCCCCCcccHHHHHHHHHH-cCCCCCHHHHHH
Q 025714 113 STIRLLMFLFRNPHDSLRIGPKEFADLWSC-------LGQWRAIFERYDRDRSGKIDLMELRDALYS-IGYAVPPSVLQL 184 (249)
Q Consensus 113 ~~~~~l~~~~d~~~~~g~i~~~eF~~~~~~-------~~~~~~~F~~~D~d~~G~I~~~el~~~l~~-~g~~l~~~~~~~ 184 (249)
+.+..+|..||. +++|.++|.|.+..++. ...+.-+|++|+.+.||.+...+|.-+|+. +| +..-.+-.
T Consensus 259 d~l~~~f~LFde-~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~lg--v~~l~v~~ 335 (412)
T KOG4666|consen 259 DKLAPTFMLFDE-GTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEHILSLILQVVLG--VEVLRVPV 335 (412)
T ss_pred hhhhhhhheecC-CCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccchHHHHHHHHHhcC--cceeeccc
Confidence 677889999999 99999999999877654 467889999999999999999999999985 45 44444677
Q ss_pred HHHHhcCCCCCCCcccchHHHHHHHHHHHHHHHHhhhc
Q 025714 185 LMDKYDNRSGSRKLGLSFDSFVECGMVVKGLTEKFKEK 222 (249)
Q Consensus 185 l~~~~d~~~~~~~g~i~~~eF~~~l~~~~~~~~~f~~~ 222 (249)
+|...+.. .+++|+|++|..++.....+..+|.-+
T Consensus 336 lf~~i~q~---d~~ki~~~~f~~fa~~~p~~a~~~~~y 370 (412)
T KOG4666|consen 336 LFPSIEQK---DDPKIYASNFRKFAATEPNLALSELGY 370 (412)
T ss_pred cchhhhcc---cCcceeHHHHHHHHHhCchhhhhhhcc
Confidence 88888887 889999999999998877766655544
No 78
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.21 E-value=2e-05 Score=54.19 Aligned_cols=67 Identities=12% Similarity=0.231 Sum_probs=56.1
Q ss_pred CchHHHHHHHHhcCCCCCcccHHHHHHHHHh-c----CCCCCHHHHHHHHHHhcCCCCCcccCHHHHHHHHHcH
Q 025714 75 THPDVIRSFEMVDRDRSGFIDENELQQALSS-G----YQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCL 143 (249)
Q Consensus 75 ~~~~l~~~F~~~D~d~~g~I~~~el~~~l~~-l----g~~~s~~~~~~l~~~~d~~~~~g~i~~~eF~~~~~~~ 143 (249)
.+..|...|..+..+ .++++..||+.++.. + ...-.+..+..++..+|. ++||.|+|.||+.++..+
T Consensus 6 ai~~lI~~FhkYaG~-~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~-n~Dg~vdF~EF~~Lv~~l 77 (91)
T cd05024 6 SMEKMMLTFHKFAGE-KNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDD-CRDGKVGFQSFFSLIAGL 77 (91)
T ss_pred HHHHHHHHHHHHcCC-CCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCC-CCCCcCcHHHHHHHHHHH
Confidence 356788899999844 569999999999973 3 234467899999999999 999999999999998865
No 79
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=98.04 E-value=4.7e-05 Score=54.04 Aligned_cols=66 Identities=23% Similarity=0.354 Sum_probs=57.3
Q ss_pred HHHHHHHHHHcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCCCCCcccchHHHHHHHHHHHHH
Q 025714 144 GQWRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYDNRSGSRKLGLSFDSFVECGMVVKGL 215 (249)
Q Consensus 144 ~~~~~~F~~~D~d~~G~I~~~el~~~l~~~g~~l~~~~~~~l~~~~d~~~~~~~g~i~~~eF~~~l~~~~~~ 215 (249)
+....+|+..|. ++|.|+.++.+.++...| |+.+.+..|+...|.+ ++|.++++||+-.|..+...
T Consensus 10 ~~y~~~F~~l~~-~~g~isg~~a~~~f~~S~--L~~~~L~~IW~LaD~~---~dG~L~~~EF~iAm~Li~~~ 75 (104)
T PF12763_consen 10 QKYDQIFQSLDP-QDGKISGDQAREFFMKSG--LPRDVLAQIWNLADID---NDGKLDFEEFAIAMHLINRK 75 (104)
T ss_dssp HHHHHHHHCTSS-STTEEEHHHHHHHHHHTT--SSHHHHHHHHHHH-SS---SSSEEEHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCC-CCCeEeHHHHHHHHHHcC--CCHHHHHHHHhhhcCC---CCCcCCHHHHHHHHHHHHHH
Confidence 567789999985 689999999999999887 8899999999999999 99999999999887776443
No 80
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=98.02 E-value=6.3e-05 Score=69.27 Aligned_cols=139 Identities=17% Similarity=0.174 Sum_probs=116.0
Q ss_pred CCCCCchHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCcccCHHHHHHHHHcH---HHHH
Q 025714 71 FPPGTHPDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCL---GQWR 147 (249)
Q Consensus 71 l~~~~~~~l~~~F~~~D~d~~g~I~~~el~~~l~~lg~~~s~~~~~~l~~~~d~~~~~g~i~~~eF~~~~~~~---~~~~ 147 (249)
........+..+|+..|.+++|.++..+...+++.+...++...+..+++..+. .+++.+...+|+.+...+ .++.
T Consensus 130 ~~~~~~~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~f~e~~~-~~~~k~~~~~~~~~~~~~~~rpev~ 208 (746)
T KOG0169|consen 130 QRSRREHWIHSIFQEADKNKNGHMSFDEVLDLLKQLNVQLSESKARRLFKESDN-SQTGKLEEEEFVKFRKELTKRPEVY 208 (746)
T ss_pred hcchHHHHHHHHHHHHccccccccchhhHHHHHHHHHHhhhHHHHHHHHHHHHh-hccceehHHHHHHHHHhhccCchHH
Confidence 444456678899999999999999999999999999999999999999999988 899999999999887654 4788
Q ss_pred HHHHHHcCCCCCcccHHHHHHHHHHcC--CCCCHHHHHHHHHHhcCCCC-CCCcccchHHHHHHHHH
Q 025714 148 AIFERYDRDRSGKIDLMELRDALYSIG--YAVPPSVLQLLMDKYDNRSG-SRKLGLSFDSFVECGMV 211 (249)
Q Consensus 148 ~~F~~~D~d~~G~I~~~el~~~l~~~g--~~l~~~~~~~l~~~~d~~~~-~~~g~i~~~eF~~~l~~ 211 (249)
.+|..+-.+ .+.++.++|.++|.... ..++.+..++++..+...+. ...+.++++.|.++|..
T Consensus 209 ~~f~~~s~~-~~~ls~~~L~~Fl~~~q~e~~~~~~~ae~ii~~~e~~k~~~~~~~l~ldgF~~yL~S 274 (746)
T KOG0169|consen 209 FLFVQYSHG-KEYLSTDDLLRFLEEEQGEDGATLDEAEEIIERYEPSKEFRRHGLLSLDGFTRYLFS 274 (746)
T ss_pred HHHHHHhCC-CCccCHHHHHHHHHHhcccccccHHHHHHHHHHhhhhhhccccceecHHHHHHHhcC
Confidence 888888544 89999999999999764 35889999999988854310 03466999999999875
No 81
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=98.01 E-value=0.0001 Score=63.83 Aligned_cols=123 Identities=14% Similarity=0.132 Sum_probs=85.5
Q ss_pred HHHHHHHHHHhcCCCCCcccCHHHHHHHHHcHHHHHHHH-----HHHcCCCCCcccHHHHHHHHHHcC------C-----
Q 025714 112 LSTIRLLMFLFRNPHDSLRIGPKEFADLWSCLGQWRAIF-----ERYDRDRSGKIDLMELRDALYSIG------Y----- 175 (249)
Q Consensus 112 ~~~~~~l~~~~d~~~~~g~i~~~eF~~~~~~~~~~~~~F-----~~~D~d~~G~I~~~el~~~l~~~g------~----- 175 (249)
..++..-|+++|. +..|.|+...|..++.....+-.-| ++...+.+|.+.-.+-.+.++.-+ -
T Consensus 463 ~sdL~~eF~~~D~-~ksG~lsis~Wa~~mE~i~~L~LPWr~L~~kla~~s~d~~v~Y~~~~~~l~~e~~~~ea~~slvet 541 (631)
T KOG0377|consen 463 RSDLEDEFRKYDP-KKSGKLSISHWAKCMENITGLNLPWRLLRPKLANGSDDGKVEYKSTLDNLDTEVILEEAGSSLVET 541 (631)
T ss_pred hhHHHHHHHhcCh-hhcCeeeHHHHHHHHHHHhcCCCcHHHhhhhccCCCcCcceehHhHHHHhhhhhHHHHHHhHHHHH
Confidence 4578888999999 9999999999999987653211111 122334455554444433333111 0
Q ss_pred -CCCHHHHHHHHHHhcCCCCCCCcccchHHHHHHHHHH----------HHHHHHhhhcCCCCCceeeecHHHHHHH
Q 025714 176 -AVPPSVLQLLMDKYDNRSGSRKLGLSFDSFVECGMVV----------KGLTEKFKEKDPRYTGSATLTYESFMSI 240 (249)
Q Consensus 176 -~l~~~~~~~l~~~~d~~~~~~~g~i~~~eF~~~l~~~----------~~~~~~f~~~d~~~~G~i~~~~~~~~~~ 240 (249)
--....++.+|..+|.| +.|.|+.+||...+..+ ..+.+..+.+|-|++|.| ++.+|+.+
T Consensus 542 LYr~ks~LetiF~~iD~D---~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~I--DlNEfLeA 612 (631)
T KOG0377|consen 542 LYRNKSSLETIFNIIDAD---NSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKI--DLNEFLEA 612 (631)
T ss_pred HHhchhhHHHHHHHhccC---CCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcc--cHHHHHHH
Confidence 01234578899999999 99999999999887654 688899999999999986 55666654
No 82
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=97.98 E-value=9.9e-06 Score=41.89 Aligned_cols=25 Identities=28% Similarity=0.622 Sum_probs=20.2
Q ss_pred HHHHHHHHcCCCCCcccHHHHHHHH
Q 025714 146 WRAIFERYDRDRSGKIDLMELRDAL 170 (249)
Q Consensus 146 ~~~~F~~~D~d~~G~I~~~el~~~l 170 (249)
++.+|+.+|.|++|.|+.+||.+++
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHHC
Confidence 4568888899999999988888753
No 83
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.98 E-value=8.7e-05 Score=68.22 Aligned_cols=64 Identities=27% Similarity=0.378 Sum_probs=58.0
Q ss_pred HHHHHHHHHcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCCCCCcccchHHHHHHHHHHH
Q 025714 145 QWRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYDNRSGSRKLGLSFDSFVECGMVVK 213 (249)
Q Consensus 145 ~~~~~F~~~D~d~~G~I~~~el~~~l~~~g~~l~~~~~~~l~~~~d~~~~~~~g~i~~~eF~~~l~~~~ 213 (249)
+.+.+|..+|+..+|.|+...-+.+|-..+ |+...+..|+...|.| +||.|+-+||+-.|...+
T Consensus 196 KY~QlFNa~DktrsG~Lsg~qaR~aL~qS~--Lpq~~LA~IW~LsDvd---~DGkL~~dEfilam~lie 259 (1118)
T KOG1029|consen 196 KYRQLFNALDKTRSGYLSGQQARSALGQSG--LPQNQLAHIWTLSDVD---GDGKLSADEFILAMHLIE 259 (1118)
T ss_pred HHHHHhhhcccccccccccHHHHHHHHhcC--CchhhHhhheeeeccC---CCCcccHHHHHHHHHHHH
Confidence 788999999999999999999999998766 8888999999999999 999999999998777653
No 84
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=97.89 E-value=4.8e-05 Score=74.17 Aligned_cols=78 Identities=19% Similarity=0.508 Sum_probs=70.6
Q ss_pred HHHHHHHHHHcCCCCCcccHHHHHHHHHHcCCCCC--H-----HHHHHHHHHhcCCCCCCCcccchHHHHHHHHHH----
Q 025714 144 GQWRAIFERYDRDRSGKIDLMELRDALYSIGYAVP--P-----SVLQLLMDKYDNRSGSRKLGLSFDSFVECGMVV---- 212 (249)
Q Consensus 144 ~~~~~~F~~~D~d~~G~I~~~el~~~l~~~g~~l~--~-----~~~~~l~~~~d~~~~~~~g~i~~~eF~~~l~~~---- 212 (249)
.++.-+|+.||.+.+|.|+-.+|+.+|+.+|+.++ + .++++++...|.+ .+|.|+..+|+.+|+..
T Consensus 2253 ~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~---r~G~Vsl~dY~afmi~~ETeN 2329 (2399)
T KOG0040|consen 2253 KEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPN---RDGYVSLQDYMAFMISKETEN 2329 (2399)
T ss_pred HHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCC---CcCcccHHHHHHHHHhccccc
Confidence 47888999999999999999999999999998762 3 3799999999999 99999999999999974
Q ss_pred ----HHHHHHhhhcCC
Q 025714 213 ----KGLTEKFKEKDP 224 (249)
Q Consensus 213 ----~~~~~~f~~~d~ 224 (249)
..|..+|+.+|.
T Consensus 2330 I~s~~eIE~AfraL~a 2345 (2399)
T KOG0040|consen 2330 ILSSEEIEDAFRALDA 2345 (2399)
T ss_pred ccchHHHHHHHHHhhc
Confidence 688999999988
No 85
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=97.86 E-value=2e-05 Score=40.72 Aligned_cols=25 Identities=28% Similarity=0.430 Sum_probs=20.2
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHH
Q 025714 79 VIRSFEMVDRDRSGFIDENELQQAL 103 (249)
Q Consensus 79 l~~~F~~~D~d~~g~I~~~el~~~l 103 (249)
|+++|+.+|.|+||.|+.+||..++
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHHC
Confidence 4678888888888888888887753
No 86
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=97.84 E-value=9.7e-05 Score=44.71 Aligned_cols=50 Identities=16% Similarity=0.187 Sum_probs=39.7
Q ss_pred cccHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCCCCCcccchHHHHHHHHHH
Q 025714 160 KIDLMELRDALYSIGYAVPPSVLQLLMDKYDNRSGSRKLGLSFDSFVECGMVV 212 (249)
Q Consensus 160 ~I~~~el~~~l~~~g~~l~~~~~~~l~~~~d~~~~~~~g~i~~~eF~~~l~~~ 212 (249)
.++..|++.+|+.+++.+++.-+..+|+..|.. ++|.|.-+||..+...|
T Consensus 1 kmsf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s---~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 1 KMSFKEVKKLLKMMNIEMDDEYARQLFQECDKS---QSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp EBEHHHHHHHHHHTT----HHHHHHHHHHH-SS---SSSEBEHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHccCcCHHHHHHHHHHhccc---CCCCccHHHHHHHHHHh
Confidence 367899999999999999999999999999998 89999999999886654
No 87
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=97.83 E-value=3.1e-05 Score=68.26 Aligned_cols=73 Identities=18% Similarity=0.276 Sum_probs=64.6
Q ss_pred CCCCCCCCchHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCC---CCHHHHHHHHHHhcCCCCCcccCHHHHHHHHHc
Q 025714 68 HSAFPPGTHPDVIRSFEMVDRDRSGFIDENELQQALSSGYQR---FSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSC 142 (249)
Q Consensus 68 ~~~l~~~~~~~l~~~F~~~D~d~~g~I~~~el~~~l~~lg~~---~s~~~~~~l~~~~d~~~~~g~i~~~eF~~~~~~ 142 (249)
+++++.++++++++.|...| |++|+|+..|+..++...+.. ...++++.++...+. +.+|.|+|++|+.++-.
T Consensus 10 ~~~~tq~El~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~-~~~g~v~fe~f~~~~~~ 85 (627)
T KOG0046|consen 10 QSQLTQEELRELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGV-DADGRVEFEEFVGIFLN 85 (627)
T ss_pred cccccHHHHHHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCC-CcCCccCHHHHHHHHHh
Confidence 45699999999999999999 999999999999999976643 357899999999998 99999999999997643
No 88
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=97.83 E-value=6.1e-05 Score=45.57 Aligned_cols=49 Identities=16% Similarity=0.144 Sum_probs=38.1
Q ss_pred cccHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCcccCHHHHHHHHHc
Q 025714 93 FIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSC 142 (249)
Q Consensus 93 ~I~~~el~~~l~~lg~~~s~~~~~~l~~~~d~~~~~g~i~~~eF~~~~~~ 142 (249)
+++..|++.+|+.+++.++...+..+|+.+|. +++|.+..+||+.++..
T Consensus 1 kmsf~Evk~lLk~~NI~~~~~yA~~LFq~~D~-s~~g~Le~~Ef~~Fy~~ 49 (51)
T PF14788_consen 1 KMSFKEVKKLLKMMNIEMDDEYARQLFQECDK-SQSGRLEGEEFEEFYKR 49 (51)
T ss_dssp EBEHHHHHHHHHHTT----HHHHHHHHHHH-S-SSSSEBEHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHccCcCHHHHHHHHHHhcc-cCCCCccHHHHHHHHHH
Confidence 36788999999999999999999999999998 89999999998888764
No 89
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=97.80 E-value=9.5e-05 Score=64.74 Aligned_cols=53 Identities=19% Similarity=0.129 Sum_probs=44.1
Q ss_pred HHHHHHHHHHcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCCCCCcccchHHHHHHHHHH
Q 025714 144 GQWRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYDNRSGSRKLGLSFDSFVECGMVV 212 (249)
Q Consensus 144 ~~~~~~F~~~D~d~~G~I~~~el~~~l~~~g~~l~~~~~~~l~~~~d~~~~~~~g~i~~~eF~~~l~~~ 212 (249)
..++.+|+.||.|++|.|+.+||.. ++.+|..+|.+ ++|.|+++||...+...
T Consensus 334 ~~l~~aF~~~D~dgdG~Is~~E~~~-------------~~~~F~~~D~d---~DG~Is~eEf~~~~~~~ 386 (391)
T PRK12309 334 HAAQEIFRLYDLDGDGFITREEWLG-------------SDAVFDALDLN---HDGKITPEEMRAGLGAA 386 (391)
T ss_pred HHHHHHHHHhCCCCCCcCcHHHHHH-------------HHHHHHHhCCC---CCCCCcHHHHHHHHHHH
Confidence 5677899999999999999999842 47789999998 88999999999877653
No 90
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=97.74 E-value=0.00012 Score=58.74 Aligned_cols=125 Identities=15% Similarity=0.120 Sum_probs=93.4
Q ss_pred HHHHHHhcCCCCCcccH---------HHHHHHHHh-cCCCCCHHHHHHHHHHhcCCCCCcccCHHHHHHHHHc-------
Q 025714 80 IRSFEMVDRDRSGFIDE---------NELQQALSS-GYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSC------- 142 (249)
Q Consensus 80 ~~~F~~~D~d~~g~I~~---------~el~~~l~~-lg~~~s~~~~~~l~~~~d~~~~~g~i~~~eF~~~~~~------- 142 (249)
.+.|..-+.++.+..+. .||..+|.- .....-...++.+++.+|. +++.+++..+|+.+..-
T Consensus 193 tqevlenlkdRwyqaDsppadlllteeEflsFLHPEhSrgmLrfmVkeivrdlDq-dgDkqlSvpeFislpvGTVenqqg 271 (362)
T KOG4251|consen 193 TQEVLENLKDRWYQADSPPADLLLTEEEFLSFLHPEHSRGMLRFMVKEIVRDLDQ-DGDKQLSVPEFISLPVGTVENQQG 271 (362)
T ss_pred HHHHHHhhhhhhccccCchhhhhhhHHHHHHHcChHhhhhhHHHHHHHHHHHhcc-CCCeeecchhhhcCCCcchhhhhc
Confidence 34455555566665544 888888762 1112223567888999999 99999999999887421
Q ss_pred --------HHHHHHHHHHHcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCCCCCcccchHHHHHH
Q 025714 143 --------LGQWRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYDNRSGSRKLGLSFDSFVEC 208 (249)
Q Consensus 143 --------~~~~~~~F~~~D~d~~G~I~~~el~~~l~~~g~~l~~~~~~~l~~~~d~~~~~~~g~i~~~eF~~~ 208 (249)
..+.++.=..+|.|.+|.++.+||.....-+...+.-.++..++...+.+ ++..++.++....
T Consensus 272 qdiddnwvkdRkkEFeElIDsNhDGivTaeELe~y~dP~n~~~alne~~~~ma~~d~n---~~~~Ls~eell~r 342 (362)
T KOG4251|consen 272 QDIDDNWVKDRKKEFEELIDSNHDGIVTAEELEDYVDPQNFRLALNEVNDIMALTDAN---NDEKLSLEELLER 342 (362)
T ss_pred cchHHHHHHHHHHHHHHHhhcCCccceeHHHHHhhcCchhhhhhHHHHHHHHhhhccC---CCcccCHHHHHHH
Confidence 13455555678999999999999999887777778888999999999988 8899999998764
No 91
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=97.73 E-value=8.1e-05 Score=65.17 Aligned_cols=118 Identities=13% Similarity=0.075 Sum_probs=79.6
Q ss_pred CCCHHHHHHHHHHhcC----------C--CCC-cccCHHHHHHHHHc----HHHHHHHHHHHcCCCCCcccHHHHHH-HH
Q 025714 109 RFSLSTIRLLMFLFRN----------P--HDS-LRIGPKEFADLWSC----LGQWRAIFERYDRDRSGKIDLMELRD-AL 170 (249)
Q Consensus 109 ~~s~~~~~~l~~~~d~----------~--~~~-g~i~~~eF~~~~~~----~~~~~~~F~~~D~d~~G~I~~~el~~-~l 170 (249)
.++...++.+...-.. . +.. -.++-.+|...+.. .+.+.+.-+.|-.| ....+++.. .|
T Consensus 247 Ti~p~ll~~L~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~f~~~~~~~~ma~ekl~egi~~F~~d---~~~L~~~i~~~~ 323 (391)
T PRK12309 247 TISPKLLEQLRSTEAELPRKLDPANAAGMEIEKIHMDRATFDKMHAEDRMASEKLDEGIKGFSKA---LETLEKLLAHRL 323 (391)
T ss_pred eCCHHHHHHHHhcCCCcCcccChhhccccccccCCCCHHHHHHHhccCchHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 4677777777653221 0 001 13566678766642 25666666666444 233444433 34
Q ss_pred HH-cCCCCCHHHHHHHHHHhcCCCCCCCcccchHHHHHHHHHHHHHHHHhhhcCCCCCceeeecHHHHHHHH
Q 025714 171 YS-IGYAVPPSVLQLLMDKYDNRSGSRKLGLSFDSFVECGMVVKGLTEKFKEKDPRYTGSATLTYESFMSIV 241 (249)
Q Consensus 171 ~~-~g~~l~~~~~~~l~~~~d~~~~~~~g~i~~~eF~~~l~~~~~~~~~f~~~d~~~~G~i~~~~~~~~~~~ 241 (249)
.. .|.......++.+|+.+|.+ ++|.|+.+||+. +...|+.+|.|++|. +++++|...+
T Consensus 324 ~~~~~~~~~~~~l~~aF~~~D~d---gdG~Is~~E~~~-------~~~~F~~~D~d~DG~--Is~eEf~~~~ 383 (391)
T PRK12309 324 ARLEGGEAFTHAAQEIFRLYDLD---GDGFITREEWLG-------SDAVFDALDLNHDGK--ITPEEMRAGL 383 (391)
T ss_pred HHhhccChhhHHHHHHHHHhCCC---CCCcCcHHHHHH-------HHHHHHHhCCCCCCC--CcHHHHHHHH
Confidence 42 46677888999999999999 999999999975 456899999999997 6788887765
No 92
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.66 E-value=0.00021 Score=68.52 Aligned_cols=71 Identities=13% Similarity=0.154 Sum_probs=59.4
Q ss_pred CCCCCCCCCchHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCcccCHHHHHHHHH
Q 025714 67 GHSAFPPGTHPDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWS 141 (249)
Q Consensus 67 ~~~~l~~~~~~~l~~~F~~~D~d~~g~I~~~el~~~l~~lg~~~s~~~~~~l~~~~d~~~~~g~i~~~eF~~~~~ 141 (249)
....++..+...+..+|..+... +|.++....+.+|..- .++...+.+++...|. +.+|.+++.||...+.
T Consensus 119 ~~p~~~~qe~aky~q~f~s~~p~-~g~~sg~~~~pil~~s--~Lp~~~l~~iw~l~d~-d~~g~Ld~~ef~~am~ 189 (847)
T KOG0998|consen 119 FVPAITPQEQAKYDQIFRSLSPS-NGLLSGDKAKPILLNS--KLPSDVLGRIWELSDI-DKDGNLDRDEFAVAMH 189 (847)
T ss_pred cCCCCCHHHHHHHHHHHhccCCC-CCccccchhhhhhhcC--CCChhhhccccccccc-cccCCCChhhhhhhhh
Confidence 35568888889999999988865 8999999988888654 5667788899999999 9999999999987764
No 93
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=97.63 E-value=0.00028 Score=52.22 Aligned_cols=92 Identities=15% Similarity=0.196 Sum_probs=70.4
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHHHhcCCC-CCHHHHHHHHHHhcCCCCCcccCHHHHHHHHHcH-------H----HHH
Q 025714 80 IRSFEMVDRDRSGFIDENELQQALSSGYQR-FSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCL-------G----QWR 147 (249)
Q Consensus 80 ~~~F~~~D~d~~g~I~~~el~~~l~~lg~~-~s~~~~~~l~~~~d~~~~~g~i~~~eF~~~~~~~-------~----~~~ 147 (249)
+++...|..||.|.++.++|.+++..+... +-.-.+...|+++|- ++++.|.-++...++..+ + -..
T Consensus 74 ~ri~e~FSeDG~GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDf-d~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~e 152 (189)
T KOG0038|consen 74 RRICEVFSEDGRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDF-DGDEFIGHDDLEKTLTSLTRDELSDEEVELICE 152 (189)
T ss_pred HHHHHHhccCCCCcccHHHHHHHHHHHHhhChHHhhhhheeEEeec-CCCCcccHHHHHHHHHHHhhccCCHHHHHHHHH
Confidence 355567778999999999999999865432 222344556788999 999999999988887654 2 345
Q ss_pred HHHHHHcCCCCCcccHHHHHHHHHH
Q 025714 148 AIFERYDRDRSGKIDLMELRDALYS 172 (249)
Q Consensus 148 ~~F~~~D~d~~G~I~~~el~~~l~~ 172 (249)
++.+-.|.||+|.|+..||..++..
T Consensus 153 kvieEAD~DgDgkl~~~eFe~~i~r 177 (189)
T KOG0038|consen 153 KVIEEADLDGDGKLSFAEFEHVILR 177 (189)
T ss_pred HHHHHhcCCCCCcccHHHHHHHHHh
Confidence 5666779999999999999987754
No 94
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=97.59 E-value=0.00041 Score=62.45 Aligned_cols=134 Identities=16% Similarity=0.209 Sum_probs=95.5
Q ss_pred CCCCCCchHHHHHHHHhcCCCCCcccHHHHHHHHH-hcCCCCCHHHHHHHHHHhcC--CCC--CcccCHHHHHHHHHc--
Q 025714 70 AFPPGTHPDVIRSFEMVDRDRSGFIDENELQQALS-SGYQRFSLSTIRLLMFLFRN--PHD--SLRIGPKEFADLWSC-- 142 (249)
Q Consensus 70 ~l~~~~~~~l~~~F~~~D~d~~g~I~~~el~~~l~-~lg~~~s~~~~~~l~~~~d~--~~~--~g~i~~~eF~~~~~~-- 142 (249)
.+.+..++.|.++|...|.|.||.++..|+..+-+ +++.++...++..+....+. +++ +..++..-|+.+...
T Consensus 188 elkp~~v~al~RIFki~D~d~D~~Lsd~Eln~fQ~~CF~~pl~p~~l~~vk~vv~e~~p~gv~~~~ltl~GFLfL~~lfi 267 (625)
T KOG1707|consen 188 ELKPRCVKALKRIFKISDSDNDGALSDAELNDFQKKCFNTPLDPQELEDVKNVVQEICPDGVYERGLTLPGFLFLNTLFI 267 (625)
T ss_pred cccHHHHHHHHHHHhhhccccccccchhhhhHHHHHhcCCCCCHHHHHHHHHHHHhhcCchhhhccccccchHHHHHHHH
Confidence 46667788999999999999999999999988887 46778888777777665543 122 444566666655321
Q ss_pred ----------------------------------------------HHHHHHHHHHHcCCCCCcccHHHHHHHHHHcCCC
Q 025714 143 ----------------------------------------------LGQWRAIFERYDRDRSGKIDLMELRDALYSIGYA 176 (249)
Q Consensus 143 ----------------------------------------------~~~~~~~F~~~D~d~~G~I~~~el~~~l~~~g~~ 176 (249)
.+.+..+|..||.|+||.++..||..+....+..
T Consensus 268 ergr~EttW~iLR~fgY~DsleL~~~~l~p~~~~~p~~s~ELs~~~~~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P~~ 347 (625)
T KOG1707|consen 268 ERGRHETTWTILRKFGYTDSLELTDEYLPPRLKVPPDQSVELSPKGYRFLVDVFEKFDRDNDGALSPEELKDLFSTAPGS 347 (625)
T ss_pred HhccccchhhhhhhcCCcchhhhhhhhcCccccCCCCcceeccHHHHHHHHHHHHhccCCCCCCcCHHHHHHHhhhCCCC
Confidence 1378999999999999999999999999987532
Q ss_pred C--CHHHHHHHHHHhcCCCCCCCcccchHHHHHHHH
Q 025714 177 V--PPSVLQLLMDKYDNRSGSRKLGLSFDSFVECGM 210 (249)
Q Consensus 177 l--~~~~~~~l~~~~d~~~~~~~g~i~~~eF~~~l~ 210 (249)
- ..-+.+. ...+ ..|.++|+.|+....
T Consensus 348 pW~~~~~~~~----t~~~---~~G~ltl~g~l~~Ws 376 (625)
T KOG1707|consen 348 PWTSSPYKDS----TVKN---ERGWLTLNGFLSQWS 376 (625)
T ss_pred CCCCCccccc----ceec---ccceeehhhHHHHHH
Confidence 2 0000000 0112 458899999987544
No 95
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=97.42 E-value=0.0021 Score=59.68 Aligned_cols=11 Identities=27% Similarity=0.141 Sum_probs=5.8
Q ss_pred hHHHHHHHHHH
Q 025714 202 FDSFVECGMVV 212 (249)
Q Consensus 202 ~~eF~~~l~~~ 212 (249)
-+.|+-.|..+
T Consensus 764 ~EQF~vvm~~v 774 (1102)
T KOG1924|consen 764 PEQFVVVMSQV 774 (1102)
T ss_pred HHHHhHHHhhc
Confidence 35565555544
No 96
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=97.37 E-value=0.0028 Score=48.58 Aligned_cols=130 Identities=16% Similarity=0.091 Sum_probs=81.4
Q ss_pred CchHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhcC--CCCCcccCHHHH---HHHHHc-------
Q 025714 75 THPDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRN--PHDSLRIGPKEF---ADLWSC------- 142 (249)
Q Consensus 75 ~~~~l~~~F~~~D~d~~g~I~~~el~~~l~~lg~~~s~~~~~~l~~~~d~--~~~~g~i~~~eF---~~~~~~------- 142 (249)
..-.|++-..-+|+|+||.|..-|-...++++|+.+--..+..++--... ....+.+.---| +.-+.+
T Consensus 5 ~~T~LQqHvaFFDrd~DGiI~P~dTy~GFraLGf~~~~s~~aa~~I~~~lSy~T~~~w~p~P~f~Iyi~nIhk~kHGSDS 84 (174)
T PF05042_consen 5 NMTVLQQHVAFFDRDKDGIIYPWDTYQGFRALGFGILLSLLAAFIIHGALSYPTQPSWIPDPFFRIYIKNIHKGKHGSDS 84 (174)
T ss_pred cccHHhhhhceeCCCCCeeECHHHHHHHHHHhCCCHHHHHHHHHHHHcccCCccCCCCCCCCceeEEeecccccccCCCc
Confidence 34567788889999999999999999999999988654443333221111 111111111011 111100
Q ss_pred ----------HHHHHHHHHHHcCCCCCcccHHHHHHHHHHcC-------CCCCHHHHHHHHHHhcCCCCCCCcccchHHH
Q 025714 143 ----------LGQWRAIFERYDRDRSGKIDLMELRDALYSIG-------YAVPPSVLQLLMDKYDNRSGSRKLGLSFDSF 205 (249)
Q Consensus 143 ----------~~~~~~~F~~~D~d~~G~I~~~el~~~l~~~g-------~~l~~~~~~~l~~~~d~~~~~~~g~i~~~eF 205 (249)
-+++.++|.+|++.+.+.|+..|+.++++.-. ..-..-|...++... .+ ++|.|.-|+-
T Consensus 85 g~YD~eGrFvp~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr~~~D~~GW~a~~~EW~~~y~L~-~d---~dG~l~Ke~i 160 (174)
T PF05042_consen 85 GAYDTEGRFVPQKFEEIFSKYAKTGPDALTLRELWRMLKGNRNANDPFGWFAAFFEWGALYILA-KD---KDGFLSKEDI 160 (174)
T ss_pred cccccCCcCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHhccccCCcchhhhhhhHHHHHHHHH-cC---cCCcEeHHHH
Confidence 26899999999999899999999999998632 222233334444433 33 6788887776
Q ss_pred HHH
Q 025714 206 VEC 208 (249)
Q Consensus 206 ~~~ 208 (249)
..+
T Consensus 161 R~v 163 (174)
T PF05042_consen 161 RGV 163 (174)
T ss_pred hhh
Confidence 544
No 97
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=97.25 E-value=0.0011 Score=45.09 Aligned_cols=65 Identities=18% Similarity=0.297 Sum_probs=52.3
Q ss_pred HHHHHHHHHcCCCCCcccHHHHHHHHHHc-CC-CCCHHHHHHHHHHhcCCC--CCCCcccchHHHHHHHHH
Q 025714 145 QWRAIFERYDRDRSGKIDLMELRDALYSI-GY-AVPPSVLQLLMDKYDNRS--GSRKLGLSFDSFVECGMV 211 (249)
Q Consensus 145 ~~~~~F~~~D~d~~G~I~~~el~~~l~~~-g~-~l~~~~~~~l~~~~d~~~--~~~~g~i~~~eF~~~l~~ 211 (249)
++..+|+.|-. +.+.|+.++|+++|+.- +. .++.+.++.++..+..+. . ..+.+++++|..+|..
T Consensus 1 ei~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~-~~~~lt~~gF~~fL~S 69 (83)
T PF09279_consen 1 EIEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNR-QKGQLTLEGFTRFLFS 69 (83)
T ss_dssp HHHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHH-CTTEEEHHHHHHHHHS
T ss_pred CHHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhc-ccCCcCHHHHHHHHCC
Confidence 46789999955 78999999999999864 44 479999999999996541 0 3689999999998764
No 98
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=97.25 E-value=9.1e-05 Score=53.52 Aligned_cols=53 Identities=21% Similarity=0.247 Sum_probs=22.0
Q ss_pred HHHHHHHHHhcCCCCCcccCHHHHHHHHHcH----HHHHHHHHHHcCCCCCcccHHHH
Q 025714 113 STIRLLMFLFRNPHDSLRIGPKEFADLWSCL----GQWRAIFERYDRDRSGKIDLMEL 166 (249)
Q Consensus 113 ~~~~~l~~~~d~~~~~g~i~~~eF~~~~~~~----~~~~~~F~~~D~d~~G~I~~~el 166 (249)
..+.-.|..+|. +++|.|+-.|+..+...+ .-++..|+..|.|+||.|+..|.
T Consensus 54 ~~~~W~F~~LD~-n~d~~L~~~El~~l~~~l~~~e~C~~~F~~~CD~n~d~~Is~~EW 110 (113)
T PF10591_consen 54 RVVHWKFCQLDR-NKDGVLDRSELKPLRRPLMPPEHCARPFFRSCDVNKDGKISLDEW 110 (113)
T ss_dssp HHHHHHHHHH---T-SSEE-TTTTGGGGSTTSTTGGGHHHHHHHH-TT-SSSEEHHHH
T ss_pred hhhhhhHhhhcC-CCCCccCHHHHHHHHHHHhhhHHHHHHHHHHcCCCCCCCCCHHHH
Confidence 344444555555 555555555544443311 22344455555555555555554
No 99
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=97.24 E-value=0.0012 Score=58.57 Aligned_cols=66 Identities=18% Similarity=0.306 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHcCCCCCcccHHHHHHHHHHcCCC---CCHHHHHHHHHHhcCCCCCCCcccchHHHHHHHHHH
Q 025714 143 LGQWRAIFERYDRDRSGKIDLMELRDALYSIGYA---VPPSVLQLLMDKYDNRSGSRKLGLSFDSFVECGMVV 212 (249)
Q Consensus 143 ~~~~~~~F~~~D~d~~G~I~~~el~~~l~~~g~~---l~~~~~~~l~~~~d~~~~~~~g~i~~~eF~~~l~~~ 212 (249)
+..++..|...| |++|.|+..|+..++...+.. ..++++++++...+.+ .+|+|+|++|+..+..+
T Consensus 18 l~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~---~~g~v~fe~f~~~~~~l 86 (627)
T KOG0046|consen 18 LRELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVD---ADGRVEFEEFVGIFLNL 86 (627)
T ss_pred HHHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCC---cCCccCHHHHHHHHHhh
Confidence 456788999999 999999999999999987654 4688999999999999 89999999999977765
No 100
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=97.23 E-value=0.00014 Score=52.54 Aligned_cols=61 Identities=20% Similarity=0.319 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCCCCCcccchHHHHHH
Q 025714 143 LGQWRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYDNRSGSRKLGLSFDSFVEC 208 (249)
Q Consensus 143 ~~~~~~~F~~~D~d~~G~I~~~el~~~l~~~g~~l~~~~~~~l~~~~d~~~~~~~g~i~~~eF~~~ 208 (249)
...+..-|..+|.|+||.|+..|++.+...+ .-.+..+...+...|.+ +|+.|++.||..|
T Consensus 53 ~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l--~~~e~C~~~F~~~CD~n---~d~~Is~~EW~~C 113 (113)
T PF10591_consen 53 KRVVHWKFCQLDRNKDGVLDRSELKPLRRPL--MPPEHCARPFFRSCDVN---KDGKISLDEWCNC 113 (113)
T ss_dssp HHHHHHHHHHH--T-SSEE-TTTTGGGGSTT--STTGGGHHHHHHHH-TT----SSSEEHHHHHHH
T ss_pred hhhhhhhHhhhcCCCCCccCHHHHHHHHHHH--hhhHHHHHHHHHHcCCC---CCCCCCHHHHccC
Confidence 4678888999999999999999998876644 35566789999999999 9999999999865
No 101
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.98 E-value=0.011 Score=49.81 Aligned_cols=43 Identities=7% Similarity=0.068 Sum_probs=25.3
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHhcCCCCCCCcccchHHHHHHHHHH
Q 025714 165 ELRDALYSIGYAVPPSVLQLLMDKYDNRSGSRKLGLSFDSFVECGMVV 212 (249)
Q Consensus 165 el~~~l~~~g~~l~~~~~~~l~~~~d~~~~~~~g~i~~~eF~~~l~~~ 212 (249)
..+++|..... +..+++.+..++..- .+|.|++++|+..++.|
T Consensus 301 l~kq~l~~~A~---d~aieD~i~~L~~~~--r~G~i~l~~yLr~VR~l 343 (365)
T KOG2391|consen 301 LYKQILECYAL---DLAIEDAIYSLGKSL--RDGVIDLDQYLRHVRLL 343 (365)
T ss_pred HHHHHHHhhhh---hhHHHHHHHHHHHHH--hcCeeeHHHHHHHHHHH
Confidence 34555554322 233454454544421 56899999999887765
No 102
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=96.95 E-value=0.0027 Score=53.21 Aligned_cols=96 Identities=14% Similarity=0.103 Sum_probs=82.2
Q ss_pred hHHHHHHHHhcCCCCCcccHHHHHHHHHh-cCCCCCHHHHHHHHHHhcCCCCCcccCHHHHHHHHHcH-----HHHHHHH
Q 025714 77 PDVIRSFEMVDRDRSGFIDENELQQALSS-GYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCL-----GQWRAIF 150 (249)
Q Consensus 77 ~~l~~~F~~~D~d~~g~I~~~el~~~l~~-lg~~~s~~~~~~l~~~~d~~~~~g~i~~~eF~~~~~~~-----~~~~~~F 150 (249)
..++..|.+||..++|.++..|....+.- +|-..+...++..|+.|+. ..||.++-++|-.++... -.+...|
T Consensus 259 d~l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v-~eDg~~ge~~ls~ilq~~lgv~~l~v~~lf 337 (412)
T KOG4666|consen 259 DKLAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSV-AEDGISGEHILSLILQVVLGVEVLRVPVLF 337 (412)
T ss_pred hhhhhhhheecCCCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhccc-ccccccchHHHHHHHHHhcCcceeeccccc
Confidence 56789999999999999999998888875 4566788999999999999 999999998887776542 3567789
Q ss_pred HHHcCCCCCcccHHHHHHHHHHc
Q 025714 151 ERYDRDRSGKIDLMELRDALYSI 173 (249)
Q Consensus 151 ~~~D~d~~G~I~~~el~~~l~~~ 173 (249)
+..+...+|.|+.++|+.+....
T Consensus 338 ~~i~q~d~~ki~~~~f~~fa~~~ 360 (412)
T KOG4666|consen 338 PSIEQKDDPKIYASNFRKFAATE 360 (412)
T ss_pred hhhhcccCcceeHHHHHHHHHhC
Confidence 99999999999999999988653
No 103
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=96.93 E-value=0.0013 Score=33.96 Aligned_cols=27 Identities=37% Similarity=0.696 Sum_probs=20.5
Q ss_pred HHHHHHHHcCCCCCcccHHHHHHHHHH
Q 025714 146 WRAIFERYDRDRSGKIDLMELRDALYS 172 (249)
Q Consensus 146 ~~~~F~~~D~d~~G~I~~~el~~~l~~ 172 (249)
++.+|+.+|.+++|.|+..||..+++.
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 456778888888888888888777764
No 104
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.90 E-value=0.018 Score=53.60 Aligned_cols=69 Identities=16% Similarity=0.261 Sum_probs=59.0
Q ss_pred CCCCCchHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCcccCHHHHHHHHHc
Q 025714 71 FPPGTHPDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSC 142 (249)
Q Consensus 71 l~~~~~~~l~~~F~~~D~d~~g~I~~~el~~~l~~lg~~~s~~~~~~l~~~~d~~~~~g~i~~~eF~~~~~~ 142 (249)
.+......++++|+.+|+...|+++...-+.+|-.- .++...+..|+...|. |+||.++.+||+-.+..
T Consensus 189 Vp~~~klKY~QlFNa~DktrsG~Lsg~qaR~aL~qS--~Lpq~~LA~IW~LsDv-d~DGkL~~dEfilam~l 257 (1118)
T KOG1029|consen 189 VPQHNKLKYRQLFNALDKTRSGYLSGQQARSALGQS--GLPQNQLAHIWTLSDV-DGDGKLSADEFILAMHL 257 (1118)
T ss_pred ccchhhhHHHHHhhhcccccccccccHHHHHHHHhc--CCchhhHhhheeeecc-CCCCcccHHHHHHHHHH
Confidence 455567788999999999999999999999888655 4667789999999999 99999999999876643
No 105
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.85 E-value=0.0092 Score=52.79 Aligned_cols=71 Identities=14% Similarity=0.240 Sum_probs=62.1
Q ss_pred CCCCCCCchHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCcccCHHHHHHHHHc
Q 025714 69 SAFPPGTHPDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSC 142 (249)
Q Consensus 69 ~~l~~~~~~~l~~~F~~~D~d~~g~I~~~el~~~l~~lg~~~s~~~~~~l~~~~d~~~~~g~i~~~eF~~~~~~ 142 (249)
-++++++++.+..-|+....|-.|.|+-.--+.++.+- .++..++..||...|. ++||.+++.||++.+..
T Consensus 223 w~IT~EQReYYvnQFrtvQpDp~gfisGsaAknFFtKS--klpi~ELshIWeLsD~-d~DGALtL~EFcAAfHL 293 (737)
T KOG1955|consen 223 WQITPEQREYYVNQFRTVQPDPHGFISGSAAKNFFTKS--KLPIEELSHIWELSDV-DRDGALTLSEFCAAFHL 293 (737)
T ss_pred cccCHHHHHHHHhhhhcccCCcccccccHHHHhhhhhc--cCchHHHHHHHhhccc-CccccccHHHHHhhHhh
Confidence 36888888889999999999999999988888888765 5677899999999999 99999999999988753
No 106
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=96.75 E-value=0.0024 Score=32.91 Aligned_cols=27 Identities=30% Similarity=0.545 Sum_probs=21.1
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHh
Q 025714 79 VIRSFEMVDRDRSGFIDENELQQALSS 105 (249)
Q Consensus 79 l~~~F~~~D~d~~g~I~~~el~~~l~~ 105 (249)
++++|..+|.+++|.|+..+|..+++.
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 567788888888888888888877754
No 107
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.62 E-value=0.0061 Score=43.33 Aligned_cols=57 Identities=23% Similarity=0.297 Sum_probs=41.7
Q ss_pred HHHHHHcCCCCCcccHHHHHHHHHHc------CC----CCCHHHHHHHHHHh----cCCCCCCCcccchHHHHH
Q 025714 148 AIFERYDRDRSGKIDLMELRDALYSI------GY----AVPPSVLQLLMDKY----DNRSGSRKLGLSFDSFVE 207 (249)
Q Consensus 148 ~~F~~~D~d~~G~I~~~el~~~l~~~------g~----~l~~~~~~~l~~~~----d~~~~~~~g~i~~~eF~~ 207 (249)
.-|+..|.|++|.|+.-|+..++... |- ..++.+++.|+... |.+ +||.|+|-||..
T Consensus 71 HYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN---~DG~IDYgEflK 141 (144)
T KOG4065|consen 71 HYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFN---GDGVIDYGEFLK 141 (144)
T ss_pred hhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccC---CCceeeHHHHHh
Confidence 35778888888999998888888743 21 24567776666554 556 789999999975
No 108
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=96.48 E-value=0.013 Score=55.69 Aligned_cols=132 Identities=17% Similarity=0.015 Sum_probs=91.4
Q ss_pred CCCCCCchHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCCCCH-----HHHHHHHHHhcCCCCCcccCHHHHHHHHHcH-
Q 025714 70 AFPPGTHPDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSL-----STIRLLMFLFRNPHDSLRIGPKEFADLWSCL- 143 (249)
Q Consensus 70 ~l~~~~~~~l~~~F~~~D~d~~g~I~~~el~~~l~~lg~~~s~-----~~~~~l~~~~d~~~~~g~i~~~eF~~~~~~~- 143 (249)
..++.+..+|+..|+.+|....|.++.+++..+|..+|...-. .++..++...|. ...|+++|.+|...+.+.
T Consensus 740 ~~sQ~v~~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~-l~~~qv~~~e~~ddl~R~~ 818 (890)
T KOG0035|consen 740 GTSQYVLDELRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNP-LIQGQVQLLEFEDDLEREY 818 (890)
T ss_pred chhHHHHHHHHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCc-ccccceeHHHHHhHhhhhh
Confidence 3455567799999999999999999999999999999987764 344455555565 667999999999988653
Q ss_pred ------HHHHHHHHHHcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCCCCCcccchHHHHHH
Q 025714 144 ------GQWRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYDNRSGSRKLGLSFDSFVEC 208 (249)
Q Consensus 144 ------~~~~~~F~~~D~d~~G~I~~~el~~~l~~~g~~l~~~~~~~l~~~~d~~~~~~~g~i~~~eF~~~ 208 (249)
.++..+|+.+-++.. .|..+||..-+.. .+-+-.+.++.. ++.++. --+.|+|..|...
T Consensus 819 e~l~~~~r~i~s~~d~~ktk~-~lL~eEL~~~~d~---lv~d~~~~e~~~-~~~~~~-~~r~Ld~~~~s~~ 883 (890)
T KOG0035|consen 819 EDLDTELRAILAFEDWAKTKA-YLLLEELVRERDE---LVRDLDIQEMAA-YDEDER-LPRGLDQVKFSSS 883 (890)
T ss_pred hhhcHHHHHHHHHHHHHcchh-HHHHHHHHhhccH---hhHHHHHHhhcc-cccCCc-ccccchHHHHHHH
Confidence 578888999977765 7888888761111 111112222221 222221 4566888888764
No 109
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=96.31 E-value=0.065 Score=49.98 Aligned_cols=45 Identities=16% Similarity=0.166 Sum_probs=22.1
Q ss_pred HHHHHHHHcCCCCCcccHHHHHHHHHHcCCC-CCHHHHHHHHHHhcC
Q 025714 146 WRAIFERYDRDRSGKIDLMELRDALYSIGYA-VPPSVLQLLMDKYDN 191 (249)
Q Consensus 146 ~~~~F~~~D~d~~G~I~~~el~~~l~~~g~~-l~~~~~~~l~~~~d~ 191 (249)
-+++|..--.-+ +.+...++..+...+.+. +..+-++.+.+....
T Consensus 442 ~~R~~nlaiT~R-~~~~~~~V~~Aih~~dLk~L~~~~ve~L~r~lPT 487 (830)
T KOG1923|consen 442 QRRLFNLAITRR-VQMKAKEVMAAIHPLDLKALSLEPVELLQRILPT 487 (830)
T ss_pred HHHHHHHHHHhh-hcCchHHHHHHhhhccccccCCcHHHHHHhcCCc
Confidence 344444443333 556667776666665543 344444444433333
No 110
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=96.23 E-value=0.12 Score=48.40 Aligned_cols=125 Identities=18% Similarity=0.199 Sum_probs=87.7
Q ss_pred CHHHHHHHHHHhcCCCCCcccCHHHHHHHHHcH------HHHHHHHHHHcCCCCCcccHHHHHHHHHHcCCCCCHHHHHH
Q 025714 111 SLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCL------GQWRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQL 184 (249)
Q Consensus 111 s~~~~~~l~~~~d~~~~~g~i~~~eF~~~~~~~------~~~~~~F~~~D~d~~G~I~~~el~~~l~~~g~~l~~~~~~~ 184 (249)
....+..+|...|+ +.+|.+++.+-..+...+ ..++..|+..|.-+++.+...++.++...+... . ++..
T Consensus 134 ~~~wi~~~~~~ad~-~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~r--p-ev~~ 209 (746)
T KOG0169|consen 134 REHWIHSIFQEADK-NKNGHMSFDEVLDLLKQLNVQLSESKARRLFKESDNSQTGKLEEEEFVKFRKELTKR--P-EVYF 209 (746)
T ss_pred HHHHHHHHHHHHcc-ccccccchhhHHHHHHHHHHhhhHHHHHHHHHHHHhhccceehHHHHHHHHHhhccC--c-hHHH
Confidence 34667888999999 999999999988877653 467888888888899999999999988876533 2 7777
Q ss_pred HHHHhcCCCCCCCcccchHHHHHHHHHH--------HHHHHHhhhcCCCCC--ceeeecHHHHHHHHhh
Q 025714 185 LMDKYDNRSGSRKLGLSFDSFVECGMVV--------KGLTEKFKEKDPRYT--GSATLTYESFMSIVIP 243 (249)
Q Consensus 185 l~~~~d~~~~~~~g~i~~~eF~~~l~~~--------~~~~~~f~~~d~~~~--G~i~~~~~~~~~~~~~ 243 (249)
+|..+-. +.+.++.++++.++... ....++.+.+..... ..--++.+.|..++++
T Consensus 210 ~f~~~s~----~~~~ls~~~L~~Fl~~~q~e~~~~~~~ae~ii~~~e~~k~~~~~~~l~ldgF~~yL~S 274 (746)
T KOG0169|consen 210 LFVQYSH----GKEYLSTDDLLRFLEEEQGEDGATLDEAEEIIERYEPSKEFRRHGLLSLDGFTRYLFS 274 (746)
T ss_pred HHHHHhC----CCCccCHHHHHHHHHHhcccccccHHHHHHHHHHhhhhhhccccceecHHHHHHHhcC
Confidence 7777766 45677777777777654 223333333322111 2223677888877654
No 111
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.13 E-value=0.021 Score=40.68 Aligned_cols=67 Identities=22% Similarity=0.199 Sum_probs=45.1
Q ss_pred CCCCCCchHHHHHHHHhcCCCCCcccHHHHHHHHHhc------CC----CCCHHHHHHHHHH----hcCCCCCcccCHHH
Q 025714 70 AFPPGTHPDVIRSFEMVDRDRSGFIDENELQQALSSG------YQ----RFSLSTIRLLMFL----FRNPHDSLRIGPKE 135 (249)
Q Consensus 70 ~l~~~~~~~l~~~F~~~D~d~~g~I~~~el~~~l~~l------g~----~~s~~~~~~l~~~----~d~~~~~g~i~~~e 135 (249)
.+++++.+ ...|...|.|++|.|+--|+.+++... |. -.++.++..+++. -|. +++|.|+|.|
T Consensus 62 ~mtpeqlq--fHYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDf-N~DG~IDYgE 138 (144)
T KOG4065|consen 62 KMTPEQLQ--FHYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDF-NGDGVIDYGE 138 (144)
T ss_pred hCCHHHHh--hhhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhccccc-CCCceeeHHH
Confidence 34444432 356899999999999999998888632 22 2345565555543 355 7788888888
Q ss_pred HHHH
Q 025714 136 FADL 139 (249)
Q Consensus 136 F~~~ 139 (249)
|+..
T Consensus 139 flK~ 142 (144)
T KOG4065|consen 139 FLKR 142 (144)
T ss_pred HHhh
Confidence 8753
No 112
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=95.89 E-value=0.022 Score=38.55 Aligned_cols=62 Identities=11% Similarity=0.209 Sum_probs=47.5
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHhcC-C-CCCHHHHHHHHHHhcCCC----CCcccCHHHHHHHHH
Q 025714 78 DVIRSFEMVDRDRSGFIDENELQQALSSGY-Q-RFSLSTIRLLMFLFRNPH----DSLRIGPKEFADLWS 141 (249)
Q Consensus 78 ~l~~~F~~~D~d~~g~I~~~el~~~l~~lg-~-~~s~~~~~~l~~~~d~~~----~~g~i~~~eF~~~~~ 141 (249)
++..+|..+-. +.+.|+.++|..+|+.-- . ..+.+.+..++..+.. + ..+.++++.|..++.
T Consensus 1 ei~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~-~~~~~~~~~lt~~gF~~fL~ 68 (83)
T PF09279_consen 1 EIEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEP-DERNRQKGQLTLEGFTRFLF 68 (83)
T ss_dssp HHHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHH-HHHHHCTTEEEHHHHHHHHH
T ss_pred CHHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHcc-chhhcccCCcCHHHHHHHHC
Confidence 47788999865 789999999999997432 2 4688888888888754 3 367788888877764
No 113
>PLN02952 phosphoinositide phospholipase C
Probab=95.65 E-value=0.08 Score=48.98 Aligned_cols=83 Identities=19% Similarity=0.208 Sum_probs=60.4
Q ss_pred CCcccCHHHHHHHHHcH--------HHHHHHHHHHcCCCCCcccHHHHHHHHHHc-CC-CCCHHHHHHHHHHhcCC----
Q 025714 127 DSLRIGPKEFADLWSCL--------GQWRAIFERYDRDRSGKIDLMELRDALYSI-GY-AVPPSVLQLLMDKYDNR---- 192 (249)
Q Consensus 127 ~~g~i~~~eF~~~~~~~--------~~~~~~F~~~D~d~~G~I~~~el~~~l~~~-g~-~l~~~~~~~l~~~~d~~---- 192 (249)
..|.++|++|..+...+ .++..+|..|-.+ .+.|+.++|..+|+.. ++ ..+.+.++.++..+...
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~~-~~~mt~~~l~~FL~~~Q~e~~~~~~~~~~i~~~~~~~~~~~ 91 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSVG-GGHMGADQLRRFLVLHQDELDCTLAEAQRIVEEVINRRHHV 91 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhCC-CCccCHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHhhcccc
Confidence 45799999998776654 5899999999544 4789999999999875 33 36777777776654211
Q ss_pred -CCCCCcccchHHHHHHHHH
Q 025714 193 -SGSRKLGLSFDSFVECGMV 211 (249)
Q Consensus 193 -~~~~~g~i~~~eF~~~l~~ 211 (249)
.- ..+.+++++|..+|..
T Consensus 92 ~~~-~~~~l~~~~F~~~l~s 110 (599)
T PLN02952 92 TRY-TRHGLNLDDFFHFLLY 110 (599)
T ss_pred ccc-cccCcCHHHHHHHHcC
Confidence 00 2346899999998874
No 114
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=95.53 E-value=0.018 Score=51.94 Aligned_cols=75 Identities=13% Similarity=0.153 Sum_probs=68.8
Q ss_pred CCCCCCCCchHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCcccCHHHHHHHHHcH
Q 025714 68 HSAFPPGTHPDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCL 143 (249)
Q Consensus 68 ~~~l~~~~~~~l~~~F~~~D~d~~g~I~~~el~~~l~~lg~~~s~~~~~~l~~~~d~~~~~g~i~~~eF~~~~~~~ 143 (249)
...++++++..++..|..+|.|+.|.+..+++.++|+..+...+.+.++++++..+. ...|.+..+||..++..+
T Consensus 584 ~i~~~~~~~~~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~-~~~g~v~l~e~~q~~s~~ 658 (680)
T KOG0042|consen 584 PIKLTPEDFLRRKTRFAFLDADKKAYQAIADVLKVLKSENVGWDEDRLHEELQEADE-NLNGFVELREFLQLMSAI 658 (680)
T ss_pred ccccCHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-hhcceeeHHHHHHHHHHH
Confidence 446899999999999999999999999999999999998889999999999999998 889999999999887643
No 115
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=95.30 E-value=0.31 Score=37.18 Aligned_cols=85 Identities=13% Similarity=0.220 Sum_probs=59.2
Q ss_pred HHHHHHHh---cCCCCCcccHHHHHHHHHhcCC---CCCHHHHHHHHHHhcCCCCCcccCHHHHHHHHHcHHHHHHHHHH
Q 025714 79 VIRSFEMV---DRDRSGFIDENELQQALSSGYQ---RFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCLGQWRAIFER 152 (249)
Q Consensus 79 l~~~F~~~---D~d~~g~I~~~el~~~l~~lg~---~~s~~~~~~l~~~~d~~~~~g~i~~~eF~~~~~~~~~~~~~F~~ 152 (249)
|+++|..| -..+...|+...|.++++.+++ .++...+..+|..+.. .+...|+|++|+.++..+ -..
T Consensus 1 L~~~F~~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~-k~~~~I~f~~F~~aL~~l------A~~ 73 (154)
T PF05517_consen 1 LEAVFKAFASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKA-KGARKITFEQFLEALAEL------AEK 73 (154)
T ss_dssp HHHHHHHHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT--SS-SEEEHHHHHHHHHHH------HHH
T ss_pred CHHHHHHHHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhc-CCCcccCHHHHHHHHHHH------HHH
Confidence 34556655 3455678999999999997654 6889999999999877 777789999999888743 222
Q ss_pred HcCCCCCcccHHHHHHHHHHc
Q 025714 153 YDRDRSGKIDLMELRDALYSI 173 (249)
Q Consensus 153 ~D~d~~G~I~~~el~~~l~~~ 173 (249)
.-.+.+ +.+++...|...
T Consensus 74 ~~~~~~---~~~~~~~kl~~~ 91 (154)
T PF05517_consen 74 KGKDKS---SAEELKEKLTAG 91 (154)
T ss_dssp HSCCCT---HHHHHHHHHHTT
T ss_pred hhcccc---cHHHHHHHHHcc
Confidence 222222 777777777543
No 116
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=95.12 E-value=0.15 Score=38.98 Aligned_cols=63 Identities=13% Similarity=0.334 Sum_probs=48.5
Q ss_pred HHHHHHH---cCCCCCcccHHHHHHHHHHcCC---CCCHHHHHHHHHHhcCCCCCCCcccchHHHHHHHHHH
Q 025714 147 RAIFERY---DRDRSGKIDLMELRDALYSIGY---AVPPSVLQLLMDKYDNRSGSRKLGLSFDSFVECGMVV 212 (249)
Q Consensus 147 ~~~F~~~---D~d~~G~I~~~el~~~l~~~g~---~l~~~~~~~l~~~~d~~~~~~~g~i~~~eF~~~l~~~ 212 (249)
+.+|..| -..+...++...|..+|+..++ .++...++.+|.++-.. ....|+|++|..+|..+
T Consensus 2 ~~~F~~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k---~~~~I~f~~F~~aL~~l 70 (154)
T PF05517_consen 2 EAVFKAFASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAK---GARKITFEQFLEALAEL 70 (154)
T ss_dssp HHHHHHHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-S---S-SEEEHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcC---CCcccCHHHHHHHHHHH
Confidence 4555555 3455678999999999998765 58999999999997665 66779999999987765
No 117
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=94.76 E-value=0.076 Score=45.12 Aligned_cols=96 Identities=14% Similarity=0.091 Sum_probs=67.7
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHhcCC---CCCHHHHHHHHHHhcCCCCCcccCHHHHHHHHHc--HHHHHHHHHH
Q 025714 78 DVIRSFEMVDRDRSGFIDENELQQALSSGYQ---RFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSC--LGQWRAIFER 152 (249)
Q Consensus 78 ~l~~~F~~~D~d~~g~I~~~el~~~l~~lg~---~~s~~~~~~l~~~~d~~~~~g~i~~~eF~~~~~~--~~~~~~~F~~ 152 (249)
+|+.+|..+-.+.++......+......+.. .+=+.++.-||..+|. +.++.++..|...+... +.-++..|..
T Consensus 212 RL~dWF~~lhe~s~~~~~~ss~~~~~~~~d~s~~p~CKds~gWMFnklD~-N~Dl~Ld~sEl~~I~ldknE~CikpFfns 290 (434)
T KOG3555|consen 212 RLRDWFKALHEDSSQNDKTSSLHSAASGFDTSILPICKDSLGWMFNKLDT-NYDLLLDQSELRAIELDKNEACIKPFFNS 290 (434)
T ss_pred HHHHHHHHHHhhhhccCcchhhcccccccccccCcchhhhhhhhhhcccc-ccccccCHHHhhhhhccCchhHHHHHHhh
Confidence 5677888777777776666666555443332 2335677888888888 88888888888776532 4557778888
Q ss_pred HcCCCCCcccHHHHHHHHHHcC
Q 025714 153 YDRDRSGKIDLMELRDALYSIG 174 (249)
Q Consensus 153 ~D~d~~G~I~~~el~~~l~~~g 174 (249)
.|...+|.|+..|.-..+..-+
T Consensus 291 CD~~kDg~iS~~EWC~CF~k~~ 312 (434)
T KOG3555|consen 291 CDTYKDGSISTNEWCYCFQKSD 312 (434)
T ss_pred hcccccCccccchhhhhhccCC
Confidence 8888888888888876665544
No 118
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=94.75 E-value=0.03 Score=36.44 Aligned_cols=57 Identities=16% Similarity=0.248 Sum_probs=40.5
Q ss_pred HHHHHHHHHHcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCC----CCCcccchHHHHHH
Q 025714 144 GQWRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYDNRSG----SRKLGLSFDSFVEC 208 (249)
Q Consensus 144 ~~~~~~F~~~D~d~~G~I~~~el~~~l~~~g~~l~~~~~~~l~~~~d~~~~----~~~g~i~~~eF~~~ 208 (249)
+.++.+|+.+ .++.+.|+.+||++.| +.+.++-++..+..-.| ...|.++|..|++.
T Consensus 6 eqv~~aFr~l-A~~KpyVT~~dLr~~l-------~pe~aey~~~~Mp~~~~~~~~~~~~~~DY~~f~~~ 66 (69)
T PF08726_consen 6 EQVEEAFRAL-AGGKPYVTEEDLRRSL-------TPEQAEYCISRMPPYEGPDGDAIPGAYDYESFTNS 66 (69)
T ss_dssp HHHHHHHHHH-CTSSSCEEHHHHHHHS--------CCCHHHHHCCSEC--SSS----TTEEECHHHHCC
T ss_pred HHHHHHHHHH-HcCCCcccHHHHHHHc-------CcHHHHHHHHHCcccCCCCcCCCCCCcCHHHHHHH
Confidence 5788999999 7888999999999885 33445666666654321 03378999999864
No 119
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=94.74 E-value=0.28 Score=37.80 Aligned_cols=32 Identities=13% Similarity=0.144 Sum_probs=23.0
Q ss_pred CCHHHHHHHHHHhcCCCCCCCcccchHHHHHHHHH
Q 025714 177 VPPSVLQLLMDKYDNRSGSRKLGLSFDSFVECGMV 211 (249)
Q Consensus 177 l~~~~~~~l~~~~d~~~~~~~g~i~~~eF~~~l~~ 211 (249)
..++.+++||++++.. ..+.|++.|..+++..
T Consensus 93 Fvp~kFe~iF~kya~~---~~d~LT~~E~~~m~~~ 124 (174)
T PF05042_consen 93 FVPQKFEEIFSKYAKT---GPDALTLRELWRMLKG 124 (174)
T ss_pred CCHHHHHHHHHHhCCC---CCCCcCHHHHHHHHHh
Confidence 4566777777777776 6677777777777664
No 120
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=94.66 E-value=0.15 Score=50.67 Aligned_cols=60 Identities=18% Similarity=0.280 Sum_probs=52.0
Q ss_pred HHHHHHHcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCCCCCcccchHHHHHHHH
Q 025714 147 RAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYDNRSGSRKLGLSFDSFVECGM 210 (249)
Q Consensus 147 ~~~F~~~D~d~~G~I~~~el~~~l~~~g~~l~~~~~~~l~~~~d~~~~~~~g~i~~~eF~~~l~ 210 (249)
...|+.||.||.|.|++.+|..++... ..-+..+++-+++..+.+ .+..++|++|+...+
T Consensus 4060 sdtfkeydpdgkgiiskkdf~kame~~-k~ytqse~dfllscae~d---end~~~y~dfv~rfh 4119 (5019)
T KOG2243|consen 4060 SDTFKEYDPDGKGIISKKDFHKAMEGH-KHYTQSEIDFLLSCAEAD---ENDMFDYEDFVDRFH 4119 (5019)
T ss_pred cccchhcCCCCCccccHHHHHHHHhcc-ccchhHHHHHHHHhhccC---ccccccHHHHHHHhc
Confidence 356999999999999999999998753 346888999999999998 889999999998655
No 121
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=93.78 E-value=1.3 Score=42.56 Aligned_cols=122 Identities=20% Similarity=0.223 Sum_probs=83.1
Q ss_pred cCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhcCC-CCCcc-----cCHHHHHHHHHcH---HHHHHHHHHHcCCC
Q 025714 87 DRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNP-HDSLR-----IGPKEFADLWSCL---GQWRAIFERYDRDR 157 (249)
Q Consensus 87 D~d~~g~I~~~el~~~l~~lg~~~s~~~~~~l~~~~d~~-~~~g~-----i~~~eF~~~~~~~---~~~~~~F~~~D~d~ 157 (249)
..+..|+|-...+.+.+.+-. .+..++..+.....+ +.... .+++-|..++..+ .++..+|..+..++
T Consensus 158 qvn~~grip~knI~k~F~~~k---~~KrVe~al~~~gLp~~k~dsI~~d~f~~e~f~~~l~klcpR~eie~iF~ki~~~~ 234 (1189)
T KOG1265|consen 158 QVNFEGRIPVKNIIKTFSADK---KEKRVEKALEACGLPSGKNDSIEPDDFTLEKFYRLLNKLCPRPEIEEIFRKISGKK 234 (1189)
T ss_pred cccccccccHHHHHHHhhcCC---chhHHHHHHHhcCCCCCCcCccChhhccHHHHHHHHHhcCCchhHHHHHHHhccCC
Confidence 346677887777777765432 113444444443321 11222 4455555555543 78999999999998
Q ss_pred CCcccHHHHHHHHHH------cCC----CCCHHHHHHHHHHhcCCCC-CCCcccchHHHHHHHHH
Q 025714 158 SGKIDLMELRDALYS------IGY----AVPPSVLQLLMDKYDNRSG-SRKLGLSFDSFVECGMV 211 (249)
Q Consensus 158 ~G~I~~~el~~~l~~------~g~----~l~~~~~~~l~~~~d~~~~-~~~g~i~~~eF~~~l~~ 211 (249)
.-+++.++|..+|.. +++ .+....+..++..+..+.+ -.+|.++-+.|+.+++-
T Consensus 235 kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liekyEp~~~~a~~gqms~dgf~ryl~g 299 (1189)
T KOG1265|consen 235 KPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEKYEPNSDNAEKGQMSTDGFVRYLMG 299 (1189)
T ss_pred CccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHHcCCchhhhhccccchhhhHHHhhC
Confidence 899999999999984 222 3778899999999987621 04789999999999885
No 122
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=93.51 E-value=0.34 Score=40.73 Aligned_cols=60 Identities=15% Similarity=0.223 Sum_probs=44.0
Q ss_pred HHHHHHHHcCCCCCcccHHHHHHHHHH----c-CCCCCHHHH-----------HHHHHHhcCCCCCCCcccchHHHHHH
Q 025714 146 WRAIFERYDRDRSGKIDLMELRDALYS----I-GYAVPPSVL-----------QLLMDKYDNRSGSRKLGLSFDSFVEC 208 (249)
Q Consensus 146 ~~~~F~~~D~d~~G~I~~~el~~~l~~----~-g~~l~~~~~-----------~~l~~~~d~~~~~~~g~i~~~eF~~~ 208 (249)
-+..|.+.|.|++|.++..||..++.. + ...-.++++ +.+|+..|.+ .|..|+++||++.
T Consensus 246 PKTFF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~vDtN---qDRlvtleEFL~~ 321 (442)
T KOG3866|consen 246 PKTFFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQVDTN---QDRLVTLEEFLND 321 (442)
T ss_pred cchheeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhcccc---hhhhhhHHHHHhh
Confidence 345788899999999999999887753 1 222222222 3467888999 8999999999874
No 123
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=92.89 E-value=0.8 Score=41.99 Aligned_cols=94 Identities=19% Similarity=0.253 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHcCCCCCcccHHHHHHHHHH-cCCCCCHHHHHHHHHHhcCC--CCCCCcccchHHHHHHHHH--------
Q 025714 143 LGQWRAIFERYDRDRSGKIDLMELRDALYS-IGYAVPPSVLQLLMDKYDNR--SGSRKLGLSFDSFVECGMV-------- 211 (249)
Q Consensus 143 ~~~~~~~F~~~D~d~~G~I~~~el~~~l~~-~g~~l~~~~~~~l~~~~d~~--~~~~~g~i~~~eF~~~l~~-------- 211 (249)
...+.++|+..|.|.+|.++-.|+-..-+. ++.++...+++.+....... .|-.++.++...|+-....
T Consensus 194 v~al~RIFki~D~d~D~~Lsd~Eln~fQ~~CF~~pl~p~~l~~vk~vv~e~~p~gv~~~~ltl~GFLfL~~lfiergr~E 273 (625)
T KOG1707|consen 194 VKALKRIFKISDSDNDGALSDAELNDFQKKCFNTPLDPQELEDVKNVVQEICPDGVYERGLTLPGFLFLNTLFIERGRHE 273 (625)
T ss_pred HHHHHHHHhhhccccccccchhhhhHHHHHhcCCCCCHHHHHHHHHHHHhhcCchhhhccccccchHHHHHHHHHhcccc
Confidence 358999999999999999999999887775 47778877777665554322 0103456677776633221
Q ss_pred ----------------------------------------HHHHHHHhhhcCCCCCceeeecHHH
Q 025714 212 ----------------------------------------VKGLTEKFKEKDPRYTGSATLTYES 236 (249)
Q Consensus 212 ----------------------------------------~~~~~~~f~~~d~~~~G~i~~~~~~ 236 (249)
...+...|..+|.++||.+.-.+-+
T Consensus 274 ttW~iLR~fgY~DsleL~~~~l~p~~~~~p~~s~ELs~~~~~Fl~~~f~~~D~d~Dg~L~p~El~ 338 (625)
T KOG1707|consen 274 TTWTILRKFGYTDSLELTDEYLPPRLKVPPDQSVELSPKGYRFLVDVFEKFDRDNDGALSPEELK 338 (625)
T ss_pred chhhhhhhcCCcchhhhhhhhcCccccCCCCcceeccHHHHHHHHHHHHhccCCCCCCcCHHHHH
Confidence 1577889999999999977554443
No 124
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.78 E-value=0.3 Score=43.64 Aligned_cols=64 Identities=17% Similarity=0.177 Sum_probs=55.7
Q ss_pred HHHHHHHHHHcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCCCCCcccchHHHHHHHHHH
Q 025714 144 GQWRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYDNRSGSRKLGLSFDSFVECGMVV 212 (249)
Q Consensus 144 ~~~~~~F~~~D~d~~G~I~~~el~~~l~~~g~~l~~~~~~~l~~~~d~~~~~~~g~i~~~eF~~~l~~~ 212 (249)
+-....|+.+..|-.|.|+...-++++..-. |.-.|+..|+...|.+ .||.|++.||+..++.+
T Consensus 231 eYYvnQFrtvQpDp~gfisGsaAknFFtKSk--lpi~ELshIWeLsD~d---~DGALtL~EFcAAfHLV 294 (737)
T KOG1955|consen 231 EYYVNQFRTVQPDPHGFISGSAAKNFFTKSK--LPIEELSHIWELSDVD---RDGALTLSEFCAAFHLV 294 (737)
T ss_pred HHHHhhhhcccCCcccccccHHHHhhhhhcc--CchHHHHHHHhhcccC---ccccccHHHHHhhHhhe
Confidence 4566789999999999999999999988755 7788999999999999 99999999999866543
No 125
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.77 E-value=0.26 Score=47.91 Aligned_cols=132 Identities=17% Similarity=0.187 Sum_probs=105.4
Q ss_pred chHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCcccCHHHHHHHHHcH------------
Q 025714 76 HPDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCL------------ 143 (249)
Q Consensus 76 ~~~l~~~F~~~D~d~~g~I~~~el~~~l~~lg~~~s~~~~~~l~~~~d~~~~~g~i~~~eF~~~~~~~------------ 143 (249)
...+...|+.+|..++|.|+..+-..++..- .+....+-.++...|. .+-|.++..+|...++..
T Consensus 10 q~~~~~~~~~~d~~~~G~i~g~~a~~f~~~s--~L~~qvl~qiws~~d~-~~~g~l~~q~f~~~lrlva~aq~~~~~~~~ 86 (847)
T KOG0998|consen 10 QPLFDQYFKSADPQGDGRITGAEAVAFLSKS--GLPDQVLGQIWSLADS-SGKGFLNRQGFYAALRLVAQAQSGRELSAK 86 (847)
T ss_pred cchHHHhhhccCcccCCcccHHHhhhhhhcc--ccchhhhhcccccccc-ccCCccccccccccchHhhhhhcccCcCcc
Confidence 3567889999999999999999999988755 4667788888888898 888999999998766431
Q ss_pred ------------------------------------------HHHHHHHHHHcCCCCCcccHHHHHHHHHHcCCCCCHHH
Q 025714 144 ------------------------------------------GQWRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSV 181 (249)
Q Consensus 144 ------------------------------------------~~~~~~F~~~D~d~~G~I~~~el~~~l~~~g~~l~~~~ 181 (249)
.+...+|.-+... +|.++.+..+-+|..-+ +..+.
T Consensus 87 ~~~~~~~~pp~~~~~~~~~~~~~~~~~~s~~~~~p~~~~qe~aky~q~f~s~~p~-~g~~sg~~~~pil~~s~--Lp~~~ 163 (847)
T KOG0998|consen 87 KVLPASAVPPPPKISHDTSPPSRPSSSTSAAPFVPAITPQEQAKYDQIFRSLSPS-NGLLSGDKAKPILLNSK--LPSDV 163 (847)
T ss_pred ccccccCCCCCCccCccCCCcccCCCCCCCcccCCCCCHHHHHHHHHHHhccCCC-CCccccchhhhhhhcCC--CChhh
Confidence 1455567777655 78999999888886544 77888
Q ss_pred HHHHHHHhcCCCCCCCcccchHHHHHHHHHHHHHH
Q 025714 182 LQLLMDKYDNRSGSRKLGLSFDSFVECGMVVKGLT 216 (249)
Q Consensus 182 ~~~l~~~~d~~~~~~~g~i~~~eF~~~l~~~~~~~ 216 (249)
+..++...|.+ .+|.++..||.-.|.....+.
T Consensus 164 l~~iw~l~d~d---~~g~Ld~~ef~~am~l~~~~l 195 (847)
T KOG0998|consen 164 LGRIWELSDID---KDGNLDRDEFAVAMHLINDLL 195 (847)
T ss_pred hcccccccccc---ccCCCChhhhhhhhhHHHHHh
Confidence 88899999998 999999999998877654443
No 126
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=91.70 E-value=2.1 Score=29.42 Aligned_cols=62 Identities=16% Similarity=0.230 Sum_probs=40.2
Q ss_pred HHHHHHHHHHcCCCCCcccHHHHHHHHHH-------cCCC----CCHHHHHHHHHHhcCCCCCCCcccchHHHHHHHHH
Q 025714 144 GQWRAIFERYDRDRSGKIDLMELRDALYS-------IGYA----VPPSVLQLLMDKYDNRSGSRKLGLSFDSFVECGMV 211 (249)
Q Consensus 144 ~~~~~~F~~~D~d~~G~I~~~el~~~l~~-------~g~~----l~~~~~~~l~~~~d~~~~~~~g~i~~~eF~~~l~~ 211 (249)
++++.+|+.+ .|.+|.++...|..+|++ +|+. -.+..++..|.... ....|+.++|++.|+.
T Consensus 3 dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~~-----~~~~I~~~~Fl~wl~~ 75 (90)
T PF09069_consen 3 DKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQVQ-----LSPKITENQFLDWLMS 75 (90)
T ss_dssp HHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHTT-----T-S-B-HHHHHHHHHT
T ss_pred HHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhcccC-----CCCccCHHHHHHHHHh
Confidence 5788899999 788899999999888874 2331 25666777777652 3457899999998774
No 127
>KOG3077 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.50 E-value=5.8 Score=32.80 Aligned_cols=162 Identities=12% Similarity=0.098 Sum_probs=94.7
Q ss_pred chHHHHHHH-HhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCcccCHHHHHHHHHcH-----------
Q 025714 76 HPDVIRSFE-MVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCL----------- 143 (249)
Q Consensus 76 ~~~l~~~F~-~~D~d~~g~I~~~el~~~l~~lg~~~s~~~~~~l~~~~d~~~~~g~i~~~eF~~~~~~~----------- 143 (249)
...+.++|. ..|.+-+..|..+-+..++..+|..+..-.+-.+.-.++. ..-+..+-+||+.-+..+
T Consensus 63 ~~~l~~~f~~y~d~~d~~~i~~dgi~~fc~dlg~~p~~i~~LvlAwkl~A-~~m~~Fsr~ef~~g~~~l~~dS~d~lq~~ 141 (260)
T KOG3077|consen 63 EKRLEELFNQYKDPDDDNLIGPDGIEKFCEDLGVEPEDISVLVLAWKLGA-ATMCEFSREEFLKGMTALGCDSIDKLQQR 141 (260)
T ss_pred HHHHHHHHHHhcCcccccccChHHHHHHHHHhCCCchhHHHHHHHHHhcc-chhhhhhHHHHHHHHHHcCCCcHHHHHHH
Confidence 455666676 4455556799999999999999987765444444445666 667888999998865431
Q ss_pred ---------------HHHHHHHHHHcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCCCCCcccchHHHHHH
Q 025714 144 ---------------GQWRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYDNRSGSRKLGLSFDSFVEC 208 (249)
Q Consensus 144 ---------------~~~~~~F~~~D~d~~G~I~~~el~~~l~~~g~~l~~~~~~~l~~~~d~~~~~~~g~i~~~eF~~~ 208 (249)
...+.+|..-+.-+--.|+.+.=+.++.-++ .-+...+..++.-.... ....++-+-+...
T Consensus 142 l~~l~~~l~d~~~Fk~iY~faf~fa~e~~qk~Ld~~~ai~~w~ll~-~~~~pll~~w~~FL~~~---~~~~~~KDtW~~~ 217 (260)
T KOG3077|consen 142 LDFLRSVLKDLEKFKSIYRFAFNFAKEPGQKSLDLETAISLWKLLF-GQTPPLLDQWIQFLKDS---PNRAISKDTWNLL 217 (260)
T ss_pred HHHHHHHHccHHHhhHHHHhhhhhccCcCcCcCCHHHHHHHHHHHh-CCCCchHHHHHHHHHhC---cCcccCcccHHHH
Confidence 1233334444333445666666666666554 34444455554444433 3344443344333
Q ss_pred HHHHHHHHHHhhhcCCCCCceeeecHHHHHHHHhhc
Q 025714 209 GMVVKGLTEKFKEKDPRYTGSATLTYESFMSIVIPF 244 (249)
Q Consensus 209 l~~~~~~~~~f~~~d~~~~G~i~~~~~~~~~~~~~~ 244 (249)
+...+.+..-.+.+ |.+|..++-.++|++.....
T Consensus 218 l~Fs~~i~~dlSnY--DeegAWP~liDeFVe~~r~~ 251 (260)
T KOG3077|consen 218 LDFSKTIDPDLSNY--DEEGAWPVLIDEFVEYLRDK 251 (260)
T ss_pred HHHHHhcCccccCc--cccccchHHHHHHHHHHHHh
Confidence 32223333333333 45677788888888776544
No 128
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=91.15 E-value=0.33 Score=41.36 Aligned_cols=62 Identities=15% Similarity=0.195 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCCCCCcccchHHHHHHHHH
Q 025714 143 LGQWRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYDNRSGSRKLGLSFDSFVECGMV 211 (249)
Q Consensus 143 ~~~~~~~F~~~D~d~~G~I~~~el~~~l~~~g~~l~~~~~~~l~~~~d~~~~~~~g~i~~~eF~~~l~~ 211 (249)
...+-..|..+|.|.+|.|+..||+.+-.. -.+.-|+..|..-|.. .||.|+-.||..+..+
T Consensus 249 Kds~gWMFnklD~N~Dl~Ld~sEl~~I~ld----knE~CikpFfnsCD~~---kDg~iS~~EWC~CF~k 310 (434)
T KOG3555|consen 249 KDSLGWMFNKLDTNYDLLLDQSELRAIELD----KNEACIKPFFNSCDTY---KDGSISTNEWCYCFQK 310 (434)
T ss_pred hhhhhhhhhccccccccccCHHHhhhhhcc----CchhHHHHHHhhhccc---ccCccccchhhhhhcc
Confidence 357888999999999999999999877532 4577899999999998 8999999999987553
No 129
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=90.61 E-value=0.66 Score=42.32 Aligned_cols=65 Identities=12% Similarity=0.113 Sum_probs=58.6
Q ss_pred HHHHHHHHHcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCCCCCcccchHHHHHHHHHH
Q 025714 145 QWRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYDNRSGSRKLGLSFDSFVECGMVV 212 (249)
Q Consensus 145 ~~~~~F~~~D~d~~G~I~~~el~~~l~~~g~~l~~~~~~~l~~~~d~~~~~~~g~i~~~eF~~~l~~~ 212 (249)
..+.-|..+|.|+.|.++..++.++|+..+...+++.+.+++.+.+.+ .+|.+..+||...+..+
T Consensus 594 ~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~~---~~g~v~l~e~~q~~s~~ 658 (680)
T KOG0042|consen 594 RRKTRFAFLDADKKAYQAIADVLKVLKSENVGWDEDRLHEELQEADEN---LNGFVELREFLQLMSAI 658 (680)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh---hcceeeHHHHHHHHHHH
Confidence 556779999999999999999999999998889999999999999997 78999999999877654
No 130
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=90.35 E-value=0.46 Score=43.83 Aligned_cols=70 Identities=16% Similarity=0.148 Sum_probs=53.6
Q ss_pred cHHHHHHHHHhcC-CCCCHHHHHHHHHHhcCCCCCcccCHHHHHHHHHc------HHHHHHHHHHHcCCCCCcccHHHH
Q 025714 95 DENELQQALSSGY-QRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSC------LGQWRAIFERYDRDRSGKIDLMEL 166 (249)
Q Consensus 95 ~~~el~~~l~~lg-~~~s~~~~~~l~~~~d~~~~~g~i~~~eF~~~~~~------~~~~~~~F~~~D~d~~G~I~~~el 166 (249)
+...+...++.+- ...+...+.++|+..|. +.+|.++|.+++..+.. ++++..+|+.+|.+++ .++.+|.
T Consensus 536 ~~~~f~~~f~~l~pw~~s~~~~~rlF~l~D~-s~~g~Ltf~~lv~gL~~l~~~~~~ek~~l~y~lh~~p~~-~~d~e~~ 612 (671)
T KOG4347|consen 536 DYAQFLEVFRELLPWAVSLIFLERLFRLLDD-SMTGLLTFKDLVSGLSILKAGDALEKLKLLYKLHDPPAD-ELDREEV 612 (671)
T ss_pred HHhhHHHHhhccCchhHHHHHHHHHHHhccc-CCcceeEHHHHHHHHHHHHhhhHHHHHHHHHhhccCCcc-ccccccc
Confidence 3344444444321 23456678889999999 99999999999988865 3788899999999999 9999888
No 131
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=90.27 E-value=0.18 Score=42.63 Aligned_cols=64 Identities=16% Similarity=0.191 Sum_probs=48.2
Q ss_pred HHHHHHHHHcCCCCCcccHHHHHHHHHHcCC-CCCHHHHHHHHHHhcCCCCCCCcccchHHHHHHHHH
Q 025714 145 QWRAIFERYDRDRSGKIDLMELRDALYSIGY-AVPPSVLQLLMDKYDNRSGSRKLGLSFDSFVECGMV 211 (249)
Q Consensus 145 ~~~~~F~~~D~d~~G~I~~~el~~~l~~~g~-~l~~~~~~~l~~~~d~~~~~~~g~i~~~eF~~~l~~ 211 (249)
.+..-|..+|+|.++.|.+.|++-+=+-+.. .-...-.+.+++.-|.+ +|..|++.||+.+|..
T Consensus 334 vv~w~F~qLdkN~nn~i~rrEwKpFK~~l~k~s~~rkC~rk~~~yCDlN---kDKkISl~Ew~~CL~~ 398 (421)
T KOG4578|consen 334 VVHWYFNQLDKNSNNDIERREWKPFKRVLLKKSKPRKCSRKFFKYCDLN---KDKKISLDEWRGCLGV 398 (421)
T ss_pred eeeeeeeeecccccCccchhhcchHHHHHHhhccHHHHhhhcchhcccC---CCceecHHHHhhhhcc
Confidence 4556789999999999999987654443221 24456677888888998 8899999999988654
No 132
>KOG0917 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.10 E-value=4.4 Score=33.57 Aligned_cols=18 Identities=6% Similarity=-0.060 Sum_probs=10.7
Q ss_pred cccCHHHHHHHHHcHHHH
Q 025714 129 LRIGPKEFADLWSCLGQW 146 (249)
Q Consensus 129 g~i~~~eF~~~~~~~~~~ 146 (249)
+.|.|++....+..+++.
T Consensus 312 sAl~yedVstavenL~Ka 329 (338)
T KOG0917|consen 312 SALQYEDVSTAVENLQKA 329 (338)
T ss_pred hhcchHHHHHHHHHHHHH
Confidence 456777776666554433
No 133
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=89.92 E-value=0.32 Score=41.18 Aligned_cols=57 Identities=19% Similarity=0.212 Sum_probs=34.0
Q ss_pred HHHHHHHhcCCCCCcccCHHHHHHHHHc-------HHHHHHHHHHHcCCCCCcccHHHHHHHHHH
Q 025714 115 IRLLMFLFRNPHDSLRIGPKEFADLWSC-------LGQWRAIFERYDRDRSGKIDLMELRDALYS 172 (249)
Q Consensus 115 ~~~l~~~~d~~~~~g~i~~~eF~~~~~~-------~~~~~~~F~~~D~d~~G~I~~~el~~~l~~ 172 (249)
++.-|..+|. +.++.|+-.|+..+-.. .+-.+..|+..|.|+|-.|+..|++..|..
T Consensus 335 v~w~F~qLdk-N~nn~i~rrEwKpFK~~l~k~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~ 398 (421)
T KOG4578|consen 335 VHWYFNQLDK-NSNNDIERREWKPFKRVLLKKSKPRKCSRKFFKYCDLNKDKKISLDEWRGCLGV 398 (421)
T ss_pred eeeeeeeecc-cccCccchhhcchHHHHHHhhccHHHHhhhcchhcccCCCceecHHHHhhhhcc
Confidence 3444555566 66666665554333222 134566677777777777777777777653
No 134
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=89.36 E-value=1.1 Score=43.08 Aligned_cols=67 Identities=18% Similarity=0.126 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHcCCCCCcccHHHHHHHHHHcCCCCCH--HHHHHHHHHh---cCCCCCCCcccchHHHHHHHHHH
Q 025714 143 LGQWRAIFERYDRDRSGKIDLMELRDALYSIGYAVPP--SVLQLLMDKY---DNRSGSRKLGLSFDSFVECGMVV 212 (249)
Q Consensus 143 ~~~~~~~F~~~D~d~~G~I~~~el~~~l~~~g~~l~~--~~~~~l~~~~---d~~~~~~~g~i~~~eF~~~l~~~ 212 (249)
+.+++.+|.-+|....|.++.+++..+|..+|....+ .-+.+++... +.. .-|.|+|.+|.+.|.+-
T Consensus 746 ~~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l---~~~qv~~~e~~ddl~R~ 817 (890)
T KOG0035|consen 746 LDELRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPL---IQGQVQLLEFEDDLERE 817 (890)
T ss_pred HHHHHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcc---cccceeHHHHHhHhhhh
Confidence 3689999999999999999999999999999988664 2244444444 443 34889999999998863
No 135
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=89.07 E-value=0.4 Score=47.16 Aligned_cols=30 Identities=0% Similarity=-0.104 Sum_probs=15.3
Q ss_pred CcccHHHHHHHHHHc---CC---CCCHHHHHHHHHH
Q 025714 159 GKIDLMELRDALYSI---GY---AVPPSVLQLLMDK 188 (249)
Q Consensus 159 G~I~~~el~~~l~~~---g~---~l~~~~~~~l~~~ 188 (249)
-.++.+....-+.-+ .+ ...++-+..++..
T Consensus 197 ppls~~q~v~~vePl~pin~~ld~~dde~v~dw~y~ 232 (2365)
T COG5178 197 PPLSKSQWVLGVEPLMPINIRLDRMDDEHVRDWVYT 232 (2365)
T ss_pred CcccHHHHHhccCCCCCCCCCcccCCcHHHHHHHhh
Confidence 466666665433321 22 2455566666654
No 136
>PLN02952 phosphoinositide phospholipase C
Probab=87.63 E-value=3.3 Score=38.66 Aligned_cols=83 Identities=12% Similarity=0.094 Sum_probs=57.4
Q ss_pred CCCcccHHHHHHHHHHcCC--CCCHHHHHHHHHHhcCCCCCCCcccchHHHHHHHHHHH--------HHHHHhhhc----
Q 025714 157 RSGKIDLMELRDALYSIGY--AVPPSVLQLLMDKYDNRSGSRKLGLSFDSFVECGMVVK--------GLTEKFKEK---- 222 (249)
Q Consensus 157 ~~G~I~~~el~~~l~~~g~--~l~~~~~~~l~~~~d~~~~~~~g~i~~~eF~~~l~~~~--------~~~~~f~~~---- 222 (249)
+.|.++..||..+.+.+.. .....++..+|..+.. +++.|+.++|..+|...+ ....++..+
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~----~~~~mt~~~l~~FL~~~Q~e~~~~~~~~~~i~~~~~~~~ 88 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSV----GGGHMGADQLRRFLVLHQDELDCTLAEAQRIVEEVINRR 88 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhC----CCCccCHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHhhc
Confidence 4589999999988887643 3478999999999976 446899999999998752 223333322
Q ss_pred CC-CCCceeeecHHHHHHHHhh
Q 025714 223 DP-RYTGSATLTYESFMSIVIP 243 (249)
Q Consensus 223 d~-~~~G~i~~~~~~~~~~~~~ 243 (249)
.. .+.+.-.++++.|..++++
T Consensus 89 ~~~~~~~~~~l~~~~F~~~l~s 110 (599)
T PLN02952 89 HHVTRYTRHGLNLDDFFHFLLY 110 (599)
T ss_pred cccccccccCcCHHHHHHHHcC
Confidence 10 1111224788888888764
No 137
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=87.47 E-value=1.1 Score=37.78 Aligned_cols=76 Identities=17% Similarity=0.209 Sum_probs=41.0
Q ss_pred HHHHHhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCcccCHHHHHHHHHcHHHHHHHHHHHcCCCCCc
Q 025714 81 RSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCLGQWRAIFERYDRDRSGK 160 (249)
Q Consensus 81 ~~F~~~D~d~~g~I~~~el~~~l~~lg~~~s~~~~~~l~~~~d~~~~~g~i~~~eF~~~~~~~~~~~~~F~~~D~d~~G~ 160 (249)
..|.+.|.|+||+++..||..++.. ++.+++.--.. + +.....+|= ++.--..+-+..|.|.+..
T Consensus 248 TFF~LHD~NsDGfldeqELEaLFtk--------ELEKvYdpkNe-e-DDM~EmeEE-----rlRMREHVMk~vDtNqDRl 312 (442)
T KOG3866|consen 248 TFFALHDLNSDGFLDEQELEALFTK--------ELEKVYDPKNE-E-DDMKEMEEE-----RLRMREHVMKQVDTNQDRL 312 (442)
T ss_pred hheeeeccCCcccccHHHHHHHHHH--------HHHHhcCCCCc-c-hHHHHHHHH-----HHHHHHHHHHhcccchhhh
Confidence 4577888889999998888887752 33333321111 1 111111110 0111234566677777777
Q ss_pred ccHHHHHHHHH
Q 025714 161 IDLMELRDALY 171 (249)
Q Consensus 161 I~~~el~~~l~ 171 (249)
|+.+||...-.
T Consensus 313 vtleEFL~~t~ 323 (442)
T KOG3866|consen 313 VTLEEFLNDTD 323 (442)
T ss_pred hhHHHHHhhhh
Confidence 77777755444
No 138
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=87.07 E-value=7.2 Score=26.43 Aligned_cols=51 Identities=6% Similarity=-0.072 Sum_probs=37.6
Q ss_pred CcccHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCCCCCcccchHHHHHHHHHH
Q 025714 159 GKIDLMELRDALYSIGYAVPPSVLQLLMDKYDNRSGSRKLGLSFDSFVECGMVV 212 (249)
Q Consensus 159 G~I~~~el~~~l~~~g~~l~~~~~~~l~~~~d~~~~~~~g~i~~~eF~~~l~~~ 212 (249)
..|+..||....+..+..+|.+..+.++..+-.. .-...+-++=...+..+
T Consensus 13 n~iT~~eLlkyskqy~i~it~~QA~~I~~~lr~k---~inIfn~~~r~~llkei 63 (85)
T PF11116_consen 13 NNITAKELLKYSKQYNISITKKQAEQIANILRGK---NINIFNEQERKKLLKEI 63 (85)
T ss_pred hcCCHHHHHHHHHHhCCCCCHHHHHHHHHHHhcC---CCCCCCHHHHHHHHHHH
Confidence 4789999999999999999999999999988664 33344444444444433
No 139
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=85.74 E-value=2.5 Score=40.41 Aligned_cols=141 Identities=17% Similarity=0.131 Sum_probs=87.0
Q ss_pred CCCCCCCchHH-HHHHHHhcCCCCCcccHHHHHHHHHhcCCCCCHH-HHHHHHHHhcCCCCCcccCHHHHHHHHHcH---
Q 025714 69 SAFPPGTHPDV-IRSFEMVDRDRSGFIDENELQQALSSGYQRFSLS-TIRLLMFLFRNPHDSLRIGPKEFADLWSCL--- 143 (249)
Q Consensus 69 ~~l~~~~~~~l-~~~F~~~D~d~~g~I~~~el~~~l~~lg~~~s~~-~~~~l~~~~d~~~~~g~i~~~eF~~~~~~~--- 143 (249)
.+.++-++..| +..+...|......|+..+++.+|....+.++.. .+..-+.. |. -..+.++|++|..+...+
T Consensus 135 ~a~~p~qI~~wlrk~~ysvd~~~~~~isard~k~~l~qvn~k~~~~kfl~e~~te-d~-~~k~dlsf~~f~~ly~~lmfs 212 (1267)
T KOG1264|consen 135 NAPTPLQIERWLRKQIYSVDQTRENSISARDLKTILPQVNFKVSSAKFLKEKFTE-DG-ARKDDLSFEQFHLLYKKLMFS 212 (1267)
T ss_pred cCCChHHHHHHHHhhheeccchhhhheeHHhhhcccccceEEechHHHHHHHHhH-hh-hccccccHHHHHHHHHHHhhc
Confidence 34555555555 6666677877788899999999999887766543 22222322 22 346789999999887654
Q ss_pred --HHHHHHHH------HHcCCCCCcccHHHHHHHHHHcCCC---CCHHHHHHHHHHhcCCC--CCCCcccchHHHHHHHH
Q 025714 144 --GQWRAIFE------RYDRDRSGKIDLMELRDALYSIGYA---VPPSVLQLLMDKYDNRS--GSRKLGLSFDSFVECGM 210 (249)
Q Consensus 144 --~~~~~~F~------~~D~d~~G~I~~~el~~~l~~~g~~---l~~~~~~~l~~~~d~~~--~~~~g~i~~~eF~~~l~ 210 (249)
.....-|+ .-+...--.|...||.++|..-... .....+++.+..|-.|- ++..-.+.+.||+.+|.
T Consensus 213 ~~~a~l~e~~~~~~~~~~~~~d~~vV~~~ef~rFL~~~Q~e~~Asdr~av~~~~r~F~~D~~re~~EPyl~v~EFv~fLF 292 (1267)
T KOG1264|consen 213 QQKAILLEFKKDFILGNTDRPDASVVYLQEFQRFLIHEQQEHWASDRNAVREFMRKFIDDTMRETAEPYLFVDEFVTFLF 292 (1267)
T ss_pred cchhhhhcccchhhhcCCCCccceEeeHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHhhhhhhccCcceeHHHHHHHHh
Confidence 11111121 1122233589999999999753221 12225666677664431 11344789999999877
Q ss_pred H
Q 025714 211 V 211 (249)
Q Consensus 211 ~ 211 (249)
.
T Consensus 293 S 293 (1267)
T KOG1264|consen 293 S 293 (1267)
T ss_pred h
Confidence 5
No 140
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=85.47 E-value=3.3 Score=36.53 Aligned_cols=28 Identities=32% Similarity=0.439 Sum_probs=19.1
Q ss_pred HHHHHHHHHHcCCCCCcccHHHHHHHHH
Q 025714 144 GQWRAIFERYDRDRSGKIDLMELRDALY 171 (249)
Q Consensus 144 ~~~~~~F~~~D~d~~G~I~~~el~~~l~ 171 (249)
+.++.+-+..|.|.+|.|+.+|--.+|+
T Consensus 68 EAir~iHrqmDDD~nG~Id~~ESdeFlr 95 (575)
T KOG4403|consen 68 EAIRDIHRQMDDDHNGSIDVEESDEFLR 95 (575)
T ss_pred HHHHHHHHhcccccCCCcccccchHHHH
Confidence 5566666777777777777776666666
No 141
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=84.93 E-value=1.7 Score=43.87 Aligned_cols=56 Identities=20% Similarity=0.380 Sum_probs=47.2
Q ss_pred HHHhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCcccCHHHHHHHH
Q 025714 83 FEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLW 140 (249)
Q Consensus 83 F~~~D~d~~g~I~~~el~~~l~~lg~~~s~~~~~~l~~~~d~~~~~g~i~~~eF~~~~ 140 (249)
|+.+|.|+.|.|+..+|.+++.... ..+..+++.++.-... +.+..+++++|+.-+
T Consensus 4063 fkeydpdgkgiiskkdf~kame~~k-~ytqse~dfllscae~-dend~~~y~dfv~rf 4118 (5019)
T KOG2243|consen 4063 FKEYDPDGKGIISKKDFHKAMEGHK-HYTQSEIDFLLSCAEA-DENDMFDYEDFVDRF 4118 (5019)
T ss_pred chhcCCCCCccccHHHHHHHHhccc-cchhHHHHHHHHhhcc-CccccccHHHHHHHh
Confidence 5678899999999999999998543 4567788888888888 888999999998765
No 142
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=83.58 E-value=8.7 Score=28.24 Aligned_cols=27 Identities=30% Similarity=0.573 Sum_probs=20.3
Q ss_pred HHHHHHHHcCCCCCcccHHHHHHHHHH
Q 025714 146 WRAIFERYDRDRSGKIDLMELRDALYS 172 (249)
Q Consensus 146 ~~~~F~~~D~d~~G~I~~~el~~~l~~ 172 (249)
+..++..||.+++|.|+.-.++.+|-.
T Consensus 99 ln~Ll~vyD~~rtG~I~vls~KvaL~~ 125 (127)
T PF09068_consen 99 LNWLLNVYDSQRTGKIRVLSFKVALIT 125 (127)
T ss_dssp HHHHHHHH-TT--SEEEHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCeeehhHHHHHHHH
Confidence 456889999999999999999988754
No 143
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.90 E-value=4.4 Score=36.10 Aligned_cols=13 Identities=38% Similarity=0.713 Sum_probs=5.1
Q ss_pred CCCCCCCCCCCCC
Q 025714 5 SGSYSSSQSYAPS 17 (249)
Q Consensus 5 ~~~~~~~~~~~~~ 17 (249)
|++....+.|.++
T Consensus 410 s~p~pq~qNyppp 422 (483)
T KOG2236|consen 410 SGPSPQQQNYPPP 422 (483)
T ss_pred CCCCcccCCCCCC
Confidence 3333333444444
No 144
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=82.63 E-value=13 Score=25.53 Aligned_cols=28 Identities=21% Similarity=0.375 Sum_probs=20.7
Q ss_pred hHHHHHHHHhcCCCCCcccHHHHHHHHHh
Q 025714 77 PDVIRSFEMVDRDRSGFIDENELQQALSS 105 (249)
Q Consensus 77 ~~l~~~F~~~D~d~~g~I~~~el~~~l~~ 105 (249)
+.++-+|+.+ .|.+|.++...|..+|+.
T Consensus 3 dKyRylFsli-sd~~g~~~~~~l~~lL~d 30 (90)
T PF09069_consen 3 DKYRYLFSLI-SDSNGCMDQRKLGLLLHD 30 (90)
T ss_dssp HHHHHHHHHH-S-TTS-B-HHHHHHHHHH
T ss_pred HHHHHHHHHH-cCCCCCCcHHHHHHHHHH
Confidence 4578889988 588999999999999873
No 145
>KOG3449 consensus 60S acidic ribosomal protein P2 [Translation, ribosomal structure and biogenesis]
Probab=81.06 E-value=10 Score=26.88 Aligned_cols=46 Identities=11% Similarity=0.190 Sum_probs=41.1
Q ss_pred HHHHHHHHcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhcC
Q 025714 146 WRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYDN 191 (249)
Q Consensus 146 ~~~~F~~~D~d~~G~I~~~el~~~l~~~g~~l~~~~~~~l~~~~d~ 191 (249)
+..+|-+++.-++-..+..+++.+|...|..+..+.++.+++....
T Consensus 3 yvaAYLL~~lgGn~~psa~DikkIl~sVG~E~d~e~i~~visel~G 48 (112)
T KOG3449|consen 3 YVAAYLLAVLGGNASPSASDIKKILESVGAEIDDERINLVLSELKG 48 (112)
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHhCcccCHHHHHHHHHHhcC
Confidence 3457788888888899999999999999999999999999999865
No 146
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=80.86 E-value=1.3 Score=31.68 Aligned_cols=32 Identities=13% Similarity=0.109 Sum_probs=23.4
Q ss_pred CCHHHHHHHHHHhcCCCCCCCcccchHHHHHHHHH
Q 025714 177 VPPSVLQLLMDKYDNRSGSRKLGLSFDSFVECGMV 211 (249)
Q Consensus 177 l~~~~~~~l~~~~d~~~~~~~g~i~~~eF~~~l~~ 211 (249)
|++++++.++.++..+ ..|+|.|.||+.....
T Consensus 4 LtDeQFdrLW~e~Pvn---~~GrLkY~eFL~kfs~ 35 (118)
T PF08976_consen 4 LTDEQFDRLWNEMPVN---AKGRLKYQEFLSKFSS 35 (118)
T ss_dssp --HHHHHHHHTTS-B----TTS-EEHHHHHHHT--
T ss_pred ccHHHhhhhhhhCcCC---ccCCEeHHHHHHHccc
Confidence 7899999999999999 8999999999986543
No 147
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=80.24 E-value=38 Score=29.22 Aligned_cols=29 Identities=17% Similarity=0.122 Sum_probs=16.5
Q ss_pred HHHHHHHHHHcCC-CCCcccHHHHHHHHHH
Q 025714 144 GQWRAIFERYDRD-RSGKIDLMELRDALYS 172 (249)
Q Consensus 144 ~~~~~~F~~~D~d-~~G~I~~~el~~~l~~ 172 (249)
..+..+...+++. ++|.|+.+++.+-.|-
T Consensus 313 ~aieD~i~~L~~~~r~G~i~l~~yLr~VR~ 342 (365)
T KOG2391|consen 313 LAIEDAIYSLGKSLRDGVIDLDQYLRHVRL 342 (365)
T ss_pred hHHHHHHHHHHHHHhcCeeeHHHHHHHHHH
Confidence 3444444444432 5688888877555544
No 148
>PLN02222 phosphoinositide phospholipase C 2
Probab=79.44 E-value=6.7 Score=36.52 Aligned_cols=64 Identities=19% Similarity=0.314 Sum_probs=45.6
Q ss_pred HHHHHHHHHHcCCCCCcccHHHHHHHHHHc-CC-CCCHHHHHHHHHHhcCCCCCCCcccchHHHHHHHHH
Q 025714 144 GQWRAIFERYDRDRSGKIDLMELRDALYSI-GY-AVPPSVLQLLMDKYDNRSGSRKLGLSFDSFVECGMV 211 (249)
Q Consensus 144 ~~~~~~F~~~D~d~~G~I~~~el~~~l~~~-g~-~l~~~~~~~l~~~~d~~~~~~~g~i~~~eF~~~l~~ 211 (249)
.++..+|..|-. ++.++.++|..+|+.. ++ ..+.+.++.++..+.... ..+.++++.|..+|..
T Consensus 25 ~ei~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~--~~~~~~~~gF~~yL~s 90 (581)
T PLN02222 25 REIKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLL--HRNGLHLDAFFKYLFG 90 (581)
T ss_pred HHHHHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhh--hccCcCHHHHHHHhcC
Confidence 577788888853 4688888888888865 33 356777888888764321 4567888999888764
No 149
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=78.64 E-value=9.2 Score=28.56 Aligned_cols=64 Identities=16% Similarity=0.340 Sum_probs=33.7
Q ss_pred cccCHHHHHHHHHcH----HHHHHHHHHHcC-------CCCCcccHHHHHHHHHHc-CCCCCHHHHHHHHHHhcCC
Q 025714 129 LRIGPKEFADLWSCL----GQWRAIFERYDR-------DRSGKIDLMELRDALYSI-GYAVPPSVLQLLMDKYDNR 192 (249)
Q Consensus 129 g~i~~~eF~~~~~~~----~~~~~~F~~~D~-------d~~G~I~~~el~~~l~~~-g~~l~~~~~~~l~~~~d~~ 192 (249)
+.++.+||..+-... ++++.+.+.|.. +..+.|+.+.|+.+|+.. ...++++-...+|..|-..
T Consensus 6 ~~lsp~eF~qLq~y~eys~kklkdvl~eF~~~g~~~~~~~~~~Id~egF~~Fm~~yLe~d~P~~lc~hLF~sF~~~ 81 (138)
T PF14513_consen 6 VSLSPEEFAQLQKYSEYSTKKLKDVLKEFHGDGSLAKYNPEEPIDYEGFKLFMKTYLEVDLPEDLCQHLFLSFQKK 81 (138)
T ss_dssp S-S-HHHHHHHHHHHHH----HHHHHHHH-HTSGGGGGEETTEE-HHHHHHHHHHHTT-S--HHHHHHHHHHS---
T ss_pred eccCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCCCCcCHHHHHHHHHHHHcCCCCHHHHHHHHHHHhCc
Confidence 456667776665432 244444444422 234588888888888874 4457777788888887654
No 150
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=78.33 E-value=14 Score=25.69 Aligned_cols=76 Identities=18% Similarity=0.035 Sum_probs=50.4
Q ss_pred CCcccHHHHHHHHHhcC--CCCCHHHHHHHHHHhcCCCCCcccCHHHHHHHHHc-------HHHHHHHHHHHcCCCCCcc
Q 025714 91 SGFIDENELQQALSSGY--QRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSC-------LGQWRAIFERYDRDRSGKI 161 (249)
Q Consensus 91 ~g~I~~~el~~~l~~lg--~~~s~~~~~~l~~~~d~~~~~g~i~~~eF~~~~~~-------~~~~~~~F~~~D~d~~G~I 161 (249)
||.++..|...+-.-+. +.++..+...++..+.. ......++.+|...+.. ..-+..+|+..-. ||.+
T Consensus 13 DG~v~~~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~L~~vA~A--DG~~ 89 (104)
T cd07313 13 DGEYDEEERAAIDRLLAERFGLDAEEAAELLAEAEA-LEEEAPDLYEFTSLIKEHFDYEERLELVEALWEVAYA--DGEL 89 (104)
T ss_pred cCCCCHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHH-HHHhCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh--cCCC
Confidence 68899888766655321 25677888888888776 66667888888877643 1345555666544 4777
Q ss_pred cHHHHHHH
Q 025714 162 DLMELRDA 169 (249)
Q Consensus 162 ~~~el~~~ 169 (249)
+..|-.-+
T Consensus 90 ~~~E~~~l 97 (104)
T cd07313 90 DEYEEHLI 97 (104)
T ss_pred CHHHHHHH
Confidence 77776543
No 151
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=77.40 E-value=7 Score=36.43 Aligned_cols=59 Identities=20% Similarity=0.229 Sum_probs=49.1
Q ss_pred chHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCcccCHHHH
Q 025714 76 HPDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEF 136 (249)
Q Consensus 76 ~~~l~~~F~~~D~d~~g~I~~~el~~~l~~lg~~~s~~~~~~l~~~~d~~~~~g~i~~~eF 136 (249)
.--++++|+++|...+|.|+..+|...|..+...--.+.+..+++.++. .++ ..+.++-
T Consensus 554 ~~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~~~~~ek~~l~y~lh~~-p~~-~~d~e~~ 612 (671)
T KOG4347|consen 554 LIFLERLFRLLDDSMTGLLTFKDLVSGLSILKAGDALEKLKLLYKLHDP-PAD-ELDREEV 612 (671)
T ss_pred HHHHHHHHHhcccCCcceeEHHHHHHHHHHHHhhhHHHHHHHHHhhccC-Ccc-ccccccc
Confidence 3346889999999999999999999999877665556778888999998 887 7777776
No 152
>cd08315 Death_TRAILR_DR4_DR5 Death domain of Tumor necrosis factor-Related Apoptosis-Inducing Ligand Receptors. Death Domain (DD) found in Tumor necrosis factor-Related Apoptosis-Inducing Ligand (TRAIL) Receptors. In mammals, this family includes TRAILR1 (also called DR4 or TNFRSF10A) and TRAILR2 (also called DR5, TNFRSF10B, or KILLER). They function as receptors for the cytokine TRAIL and are involved in apoptosis signaling pathways. TRAIL preferentially induces apoptosis in cancer cells while exhibiting little toxicity in normal cells. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=76.77 E-value=22 Score=24.66 Aligned_cols=89 Identities=16% Similarity=0.101 Sum_probs=57.3
Q ss_pred chHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCcccCHHHHHHHHHcHHHHHHHHHHHcC
Q 025714 76 HPDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCLGQWRAIFERYDR 155 (249)
Q Consensus 76 ~~~l~~~F~~~D~d~~g~I~~~el~~~l~~lg~~~s~~~~~~l~~~~d~~~~~g~i~~~eF~~~~~~~~~~~~~F~~~D~ 155 (249)
.+.++..|..+-. .|...+++.+++.+| ++..++..+-...-. +-+.-..++. .|+.-
T Consensus 3 ~~~l~~~f~~i~~----~V~~~~Wk~laR~LG--Lse~~I~~i~~~~~~-------~~eq~~qmL~-------~W~~~-- 60 (96)
T cd08315 3 QETLRRSFDHFIK----EVPFDSWNRLMRQLG--LSENEIDVAKANERV-------TREQLYQMLL-------TWVNK-- 60 (96)
T ss_pred HhHHHHHHHHHHH----HCCHHHHHHHHHHcC--CCHHHHHHHHHHCCC-------CHHHHHHHHH-------HHHHh--
Confidence 3567778877642 578889999999986 777777776653211 1222222221 22222
Q ss_pred CCCCcccHHHHHHHHHHcCCCCCHHHHHHHHH
Q 025714 156 DRSGKIDLMELRDALYSIGYAVPPSVLQLLMD 187 (249)
Q Consensus 156 d~~G~I~~~el~~~l~~~g~~l~~~~~~~l~~ 187 (249)
.|. .=+...|.++|+.++.....+.|+..+-
T Consensus 61 ~G~-~At~~~L~~aL~~~~~~~~Ae~I~~~l~ 91 (96)
T cd08315 61 TGR-KASVNTLLDALEAIGLRLAKESIQDELI 91 (96)
T ss_pred hCC-CcHHHHHHHHHHHcccccHHHHHHHHHH
Confidence 232 3458899999999999999888887653
No 153
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=76.58 E-value=21 Score=24.23 Aligned_cols=50 Identities=12% Similarity=0.032 Sum_probs=39.4
Q ss_pred CcccHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCcccCHHHHHHHHHc
Q 025714 92 GFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSC 142 (249)
Q Consensus 92 g~I~~~el~~~l~~lg~~~s~~~~~~l~~~~d~~~~~g~i~~~eF~~~~~~ 142 (249)
..|+..||....+..+..++.+.++.++..+.. ..-...+-++=..++..
T Consensus 13 n~iT~~eLlkyskqy~i~it~~QA~~I~~~lr~-k~inIfn~~~r~~llke 62 (85)
T PF11116_consen 13 NNITAKELLKYSKQYNISITKKQAEQIANILRG-KNINIFNEQERKKLLKE 62 (85)
T ss_pred hcCCHHHHHHHHHHhCCCCCHHHHHHHHHHHhc-CCCCCCCHHHHHHHHHH
Confidence 468999999999999999999999999998876 66555666665555544
No 154
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=75.94 E-value=6.8 Score=29.27 Aligned_cols=55 Identities=7% Similarity=0.092 Sum_probs=32.3
Q ss_pred CCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCC----CCCcccchHHHHHHHHHH
Q 025714 156 DRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYDNRSG----SRKLGLSFDSFVECGMVV 212 (249)
Q Consensus 156 d~~G~I~~~el~~~l~~~g~~l~~~~~~~l~~~~d~~~~----~~~g~i~~~eF~~~l~~~ 212 (249)
...+.|+..||.++-+-+.+ +...+.+++..|..++. -.++.|+|+.|..+|...
T Consensus 3 ~~~~~lsp~eF~qLq~y~ey--s~kklkdvl~eF~~~g~~~~~~~~~~Id~egF~~Fm~~y 61 (138)
T PF14513_consen 3 KEWVSLSPEEFAQLQKYSEY--STKKLKDVLKEFHGDGSLAKYNPEEPIDYEGFKLFMKTY 61 (138)
T ss_dssp ---S-S-HHHHHHHHHHHHH------HHHHHHHH-HTSGGGGGEETTEE-HHHHHHHHHHH
T ss_pred cceeccCHHHHHHHHHHHHH--HHHHHHHHHHHHhcCCcccccCCCCCcCHHHHHHHHHHH
Confidence 34688999999987765433 45578888888854410 024689999999998863
No 155
>PTZ00373 60S Acidic ribosomal protein P2; Provisional
Probab=75.69 E-value=18 Score=26.01 Aligned_cols=53 Identities=11% Similarity=0.126 Sum_probs=43.0
Q ss_pred HHHHHHHcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCCCCCcccchHHHHH
Q 025714 147 RAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYDNRSGSRKLGLSFDSFVE 207 (249)
Q Consensus 147 ~~~F~~~D~d~~G~I~~~el~~~l~~~g~~l~~~~~~~l~~~~d~~~~~~~g~i~~~eF~~ 207 (249)
..+|-+.-.-|+..++.++++.+|...|..+....+..+++.+.. .+.+|.+.
T Consensus 6 vaAYlL~~lgG~~~pTaddI~kIL~AaGveVd~~~~~l~~~~L~G--------KdI~ELIa 58 (112)
T PTZ00373 6 VAAYLMCVLGGNENPTKKEVKNVLSAVNADVEDDVLDNFFKSLEG--------KTPHELIA 58 (112)
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHcC--------CCHHHHHH
Confidence 345666666778889999999999999999999999999998865 35566665
No 156
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=75.01 E-value=73 Score=30.68 Aligned_cols=159 Identities=11% Similarity=0.086 Sum_probs=92.8
Q ss_pred CCCchHHHHHHHH-hcCCCCCccc----HHHHHHHHHhcCC-CCCHHHHHHHHHHhcCCCCCcccCHHHHHHHHHcH---
Q 025714 73 PGTHPDVIRSFEM-VDRDRSGFID----ENELQQALSSGYQ-RFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCL--- 143 (249)
Q Consensus 73 ~~~~~~l~~~F~~-~D~d~~g~I~----~~el~~~l~~lg~-~~s~~~~~~l~~~~d~~~~~g~i~~~eF~~~~~~~--- 143 (249)
.-+...+-++|+. .|.+ +-+.+ .-.|+.+-+.+.. .++-..+..+|...+...++..++..+.+.++...
T Consensus 375 ~wdhp~~tel~q~lad~n-nvKfsaYRtAmKlr~LQK~l~ldlv~ltl~l~if~~h~l~~~~e~m~~~~~i~~L~~~y~~ 453 (966)
T KOG4286|consen 375 CWDHPKMTELYQSLADLN-NVKFSAYRTAMKLRRLQKALCLDLLSLSLALDALDQHNLKQNDQPMDILQIINCLTTIYDR 453 (966)
T ss_pred hccchHHHHHHHHHHHhc-CeeehhHHHHHHHHHHHHHHHhccccHHHHHHHHHHhcccccCcCCCHHHHHHHHHHHHHH
Confidence 3445556666663 3333 22222 2233333333333 24556677777777662335556666666554321
Q ss_pred ----------------HHHHHHHHHHcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCCCCCcccchHHHHH
Q 025714 144 ----------------GQWRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYDNRSGSRKLGLSFDSFVE 207 (249)
Q Consensus 144 ----------------~~~~~~F~~~D~d~~G~I~~~el~~~l~~~g~~l~~~~~~~l~~~~d~~~~~~~g~i~~~eF~~ 207 (249)
..+..+++.||..++|.|..-+|+-.+--+.-...++.+..+|+..... +. .++-..|--
T Consensus 454 l~e~~g~~v~v~l~vD~~lN~llNvyD~~R~g~irvls~ki~~i~lck~~leek~~ylF~~vA~~---~s-q~~q~~l~l 529 (966)
T KOG4286|consen 454 LEQEHGNLVNVPLCVDMCLNWLLNVYDTGRTGRIRVLSFKIGIISLCKAHLEDKYRYLFKQVASS---TS-QCDQRRLGL 529 (966)
T ss_pred HHHHcccccccchHHHHHHHHHHHhcccCCCcceEEeeehhhHHHHhcchhHHHHHHHHHHHcCc---hh-hHHHHHHHH
Confidence 2567889999999999999999998777665555667777999888765 32 332333333
Q ss_pred HHHHH-------------------HHHHHHhhhcCCCCCceeeecHHHHHHH
Q 025714 208 CGMVV-------------------KGLTEKFKEKDPRYTGSATLTYESFMSI 240 (249)
Q Consensus 208 ~l~~~-------------------~~~~~~f~~~d~~~~G~i~~~~~~~~~~ 240 (249)
.|..+ ..+..+|+ ...|.=++.+..|+.-
T Consensus 530 LL~dliqipr~lGE~aAfGgsNvepsvrsCF~----~v~~~pei~~~~f~dw 577 (966)
T KOG4286|consen 530 LLHDLIQIPRQLGEVAAFGGSNIEPSVRSCFQ----FVNNKPEIEAALFLDW 577 (966)
T ss_pred HHHHHHHHHHHHhHHHhhcCCCCChHHHHHHH----hcCCCCcchHHHHHHH
Confidence 33222 56777787 2334445666666543
No 157
>PTZ00373 60S Acidic ribosomal protein P2; Provisional
Probab=74.58 E-value=21 Score=25.60 Aligned_cols=54 Identities=11% Similarity=0.102 Sum_probs=43.6
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCcccCHHHHHH
Q 025714 79 VIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFAD 138 (249)
Q Consensus 79 l~~~F~~~D~d~~g~I~~~el~~~l~~lg~~~s~~~~~~l~~~~d~~~~~g~i~~~eF~~ 138 (249)
+..+|-++-.-++..++.+++.++|.+.|..+....+..+++.+.. .+++|.+.
T Consensus 5 yvaAYlL~~lgG~~~pTaddI~kIL~AaGveVd~~~~~l~~~~L~G------KdI~ELIa 58 (112)
T PTZ00373 5 YVAAYLMCVLGGNENPTKKEVKNVLSAVNADVEDDVLDNFFKSLEG------KTPHELIA 58 (112)
T ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHcC------CCHHHHHH
Confidence 4455666667777789999999999999999999999999988865 56666654
No 158
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=73.70 E-value=9.8 Score=34.26 Aligned_cols=62 Identities=27% Similarity=0.331 Sum_probs=41.0
Q ss_pred HHHHHcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHh---cC--CCCCCCcccchHHHHHHHH
Q 025714 149 IFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKY---DN--RSGSRKLGLSFDSFVECGM 210 (249)
Q Consensus 149 ~F~~~D~d~~G~I~~~el~~~l~~~g~~l~~~~~~~l~~~~---d~--~~~~~~g~i~~~eF~~~l~ 210 (249)
+|..|-...++.|+...|..+|++.|+.-++..+.++|.++ +. ++++....++-+-|.+++.
T Consensus 91 LFyLiaegq~ekipihKFiTALkstGLrtsDPRLk~mMd~mKd~dq~~~e~S~gw~LdKDlFKkcI~ 157 (622)
T KOG0506|consen 91 LFYLIAEGQSEKIPIHKFITALKSTGLRTSDPRLKDMMDEMKDVDQEENESSSGWLLDKDLFKKCIF 157 (622)
T ss_pred hhHHhhcCCcCcccHHHHHHHHHHcCCCcCCchHHHHHHHHHHHHhhhcccccceeecHHHHHHhhc
Confidence 56666444458888888888888888887777777777664 21 1111345667777776654
No 159
>PF12631 GTPase_Cys_C: Catalytic cysteine-containing C-terminus of GTPase, MnmE; PDB: 1XZQ_A 1XZP_A 2GJ8_D 3GEH_A 3GEI_B 3GEE_A.
Probab=72.34 E-value=14 Score=24.04 Aligned_cols=58 Identities=19% Similarity=0.268 Sum_probs=37.9
Q ss_pred CHHHHHHHHHcHHHHHHHHHHHcCCCCCcccHHHHHHHHHHc----CCCCCHHHHHHHHHHh
Q 025714 132 GPKEFADLWSCLGQWRAIFERYDRDRSGKIDLMELRDALYSI----GYAVPPSVLQLLMDKY 189 (249)
Q Consensus 132 ~~~eF~~~~~~~~~~~~~F~~~D~d~~G~I~~~el~~~l~~~----g~~l~~~~~~~l~~~~ 189 (249)
+-.+...+-..++.+..+.+.++..-.--|-..+++.+++.+ |...+++.++.+|+.|
T Consensus 11 ~~Rq~~~L~~a~~~l~~a~~~l~~~~~~dl~a~~L~~A~~~L~~ItG~~~~ediLd~IFs~F 72 (73)
T PF12631_consen 11 NARQRQLLEQALEHLEDALEALENGLPLDLVAEDLREALESLGEITGEVVTEDILDNIFSNF 72 (73)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHCTSS--HHHHHHHHCTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHhh
Confidence 344444444556777777777766555566678888888764 6778889999999876
No 160
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=72.23 E-value=52 Score=27.50 Aligned_cols=130 Identities=9% Similarity=0.058 Sum_probs=73.7
Q ss_pred CCCCcccHHHHHHHHHhcC--CCCCHHHHHHHHHHhcCCCCCcccCHHHHHHHHHcH-----HH----HHHHHHHHcCCC
Q 025714 89 DRSGFIDENELQQALSSGY--QRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCL-----GQ----WRAIFERYDRDR 157 (249)
Q Consensus 89 d~~g~I~~~el~~~l~~lg--~~~s~~~~~~l~~~~d~~~~~g~i~~~eF~~~~~~~-----~~----~~~~F~~~D~d~ 157 (249)
.-||.|+..|+. +.+.+- +.++.+.-+.+...+.. ......++++|+.-+... +. +..+|..-=.
T Consensus 67 kADG~Vse~Ei~-~~~~l~~~~~l~~~~r~~a~~lf~~-~k~~~~~l~~~~~~~~~~~~~r~~l~~~lL~~l~~vA~A-- 142 (267)
T PRK09430 67 KAKGRVTEADIR-IASQLMDRMNLHGEARRAAQQAFRE-GKEPDFPLREKLRQFRSVCGGRFDLLRMFLEIQIQAAFA-- 142 (267)
T ss_pred hcCCCcCHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHH-hcccCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHh--
Confidence 357999999987 444331 35667664444555554 444558899988776531 11 2444555533
Q ss_pred CCcccHHHHHHHHHHc-CCCCCHHHHHHHHHHhcC----CCC-C------CCcccchHHHHHHHHH-----HHHHHHHhh
Q 025714 158 SGKIDLMELRDALYSI-GYAVPPSVLQLLMDKYDN----RSG-S------RKLGLSFDSFVECGMV-----VKGLTEKFK 220 (249)
Q Consensus 158 ~G~I~~~el~~~l~~~-g~~l~~~~~~~l~~~~d~----~~~-~------~~g~i~~~eF~~~l~~-----~~~~~~~f~ 220 (249)
||.|+..|-.-+.+-. .+.++..+++.+...+.. ..+ . .....+++++..+|-. .+.++++|+
T Consensus 143 DG~l~~~E~~~L~~Ia~~Lgis~~df~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ay~vLgv~~~as~~eIk~aYr 222 (267)
T PRK09430 143 DGSLHPNERQVLYVIAEELGFSRFQFDQLLRMMQAGFRFQQQQGGGGYQQAQRGPTLEDAYKVLGVSESDDDQEIKRAYR 222 (267)
T ss_pred cCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcccccccccccccCCCcHHhHHHHcCCCCCCCHHHHHHHHH
Confidence 4889998854333321 233888888888776542 100 0 0113466677665532 255666665
Q ss_pred hc
Q 025714 221 EK 222 (249)
Q Consensus 221 ~~ 222 (249)
.+
T Consensus 223 ~L 224 (267)
T PRK09430 223 KL 224 (267)
T ss_pred HH
Confidence 44
No 161
>KOG0917 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.73 E-value=29 Score=28.98 Aligned_cols=33 Identities=6% Similarity=0.122 Sum_probs=17.1
Q ss_pred CCCCCCCCchHHHHHHHHhcCCCCCcccHHHHHHHHH
Q 025714 68 HSAFPPGTHPDVIRSFEMVDRDRSGFIDENELQQALS 104 (249)
Q Consensus 68 ~~~l~~~~~~~l~~~F~~~D~d~~g~I~~~el~~~l~ 104 (249)
..+.++++.++.+++.+-.- +.+..+|+..+..
T Consensus 292 g~qptpE~faea~K~~kyA~----sAl~yedVstave 324 (338)
T KOG0917|consen 292 GVQPTPEDFAEAQKYCKYAG----SALQYEDVSTAVE 324 (338)
T ss_pred CCccCHHHHHHHHHHHHHhh----hhcchHHHHHHHH
Confidence 34556666666555444321 4555555555544
No 162
>PLN02228 Phosphoinositide phospholipase C
Probab=71.32 E-value=17 Score=33.89 Aligned_cols=65 Identities=17% Similarity=0.247 Sum_probs=39.7
Q ss_pred HHHHHHHHHHcCCCCCcccHHHHHHHHHHc-CC-CCCHHHHHHHHHHhcCCC--CCCCcccchHHHHHHHHH
Q 025714 144 GQWRAIFERYDRDRSGKIDLMELRDALYSI-GY-AVPPSVLQLLMDKYDNRS--GSRKLGLSFDSFVECGMV 211 (249)
Q Consensus 144 ~~~~~~F~~~D~d~~G~I~~~el~~~l~~~-g~-~l~~~~~~~l~~~~d~~~--~~~~g~i~~~eF~~~l~~ 211 (249)
.++..+|..|-. ++.|+.++|..+|+.. ++ ..+.+.+++++..+...+ . ..+.++.+.|..+|..
T Consensus 24 ~ei~~if~~~s~--~~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~gF~~yl~s 92 (567)
T PLN02228 24 VSIKRLFEAYSR--NGKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFH-HHGLVHLNAFYRYLFS 92 (567)
T ss_pred HHHHHHHHHhcC--CCccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhc-ccCccCHHHHHHHhcC
Confidence 456666766643 2467777777777654 22 245566777777765320 0 2356888888887654
No 163
>PLN02230 phosphoinositide phospholipase C 4
Probab=70.50 E-value=17 Score=34.01 Aligned_cols=67 Identities=16% Similarity=0.227 Sum_probs=46.9
Q ss_pred HHHHHHHHHHcCCCCCcccHHHHHHHHHHcC-C--CCCHHHHHHHHHHhcCCCC----CCCcccchHHHHHHHHH
Q 025714 144 GQWRAIFERYDRDRSGKIDLMELRDALYSIG-Y--AVPPSVLQLLMDKYDNRSG----SRKLGLSFDSFVECGMV 211 (249)
Q Consensus 144 ~~~~~~F~~~D~d~~G~I~~~el~~~l~~~g-~--~l~~~~~~~l~~~~d~~~~----~~~g~i~~~eF~~~l~~ 211 (249)
.++..+|..|-.++ +.++.++|.++|+.-. . ..+.++.+.++..+..... ...+.++++.|..+|..
T Consensus 29 ~ei~~lf~~~s~~~-~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~s 102 (598)
T PLN02230 29 ADVRDLFEKYADGD-AHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLFS 102 (598)
T ss_pred HHHHHHHHHHhCCC-CccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHcC
Confidence 58888999995444 7999999999998754 2 3466777777765532200 02456999999998875
No 164
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=69.88 E-value=6.7 Score=28.86 Aligned_cols=81 Identities=11% Similarity=0.148 Sum_probs=48.7
Q ss_pred CCcccHHHHHHHHHHc--CCCCCHHHHHHHHHHhcCCCCCCCcccchHHHHHHHHH-------HHHHHHHhhhcCCCCCc
Q 025714 158 SGKIDLMELRDALYSI--GYAVPPSVLQLLMDKYDNRSGSRKLGLSFDSFVECGMV-------VKGLTEKFKEKDPRYTG 228 (249)
Q Consensus 158 ~G~I~~~el~~~l~~~--g~~l~~~~~~~l~~~~d~~~~~~~g~i~~~eF~~~l~~-------~~~~~~~f~~~d~~~~G 228 (249)
||.|+.+|...+.+.+ ...++..+.+.++..++.. ....+++.+|+..+.. ...+..++..... ||
T Consensus 37 DG~v~~~E~~~i~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~r~~ll~~l~~ia~A--DG 111 (140)
T PF05099_consen 37 DGEVDPEEIEAIRQLLAERFGLSPEEAEELIELADEL---KQEPIDLEELLRELRDSLSPEEREDLLRMLIAIAYA--DG 111 (140)
T ss_dssp TSS--CHHHHHHHHHHHHCGCGSCHHHHHHHHHHCHH---HHHCCHHHHHHHHHCTS--HHHHHHHHHHHHHHCTC--TT
T ss_pred CCCCCHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHH---HhccccHHHHHHHHHHhhchHHHHHHHHHHHHHHhc--CC
Confidence 5888888887766654 2335677777777777654 4445667777655533 2344455555555 46
Q ss_pred eeeecHHHHHHHHhh
Q 025714 229 SATLTYESFMSIVIP 243 (249)
Q Consensus 229 ~i~~~~~~~~~~~~~ 243 (249)
.++-.+.+++.-+..
T Consensus 112 ~~~~~E~~~l~~ia~ 126 (140)
T PF05099_consen 112 EISPEEQEFLRRIAE 126 (140)
T ss_dssp C-SCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 777788877766543
No 165
>cd05833 Ribosomal_P2 Ribosomal protein P2. This subfamily represents the eukaryotic large ribosomal protein P2. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P2 is located in the L12 stalk, with proteins P1, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers). Bacteria may have four or six copies of L7/L12 (two or three homodimers) depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2
Probab=69.26 E-value=30 Score=24.70 Aligned_cols=54 Identities=11% Similarity=0.162 Sum_probs=43.2
Q ss_pred HHHHHHHcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCCCCCcccchHHHHHH
Q 025714 147 RAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYDNRSGSRKLGLSFDSFVEC 208 (249)
Q Consensus 147 ~~~F~~~D~d~~G~I~~~el~~~l~~~g~~l~~~~~~~l~~~~d~~~~~~~g~i~~~eF~~~ 208 (249)
..+|-+.-..|+..++.+.++.+|+..|..+....+..+++.+.. .+.++.+..
T Consensus 4 vaAylL~~l~g~~~pTa~dI~~IL~AaGveVe~~~~~lf~~~L~G--------Kdi~eLIa~ 57 (109)
T cd05833 4 VAAYLLAVLGGNASPSAADVKKILGSVGVEVDDEKLNKVISELEG--------KDVEELIAA 57 (109)
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHcC--------CCHHHHHHH
Confidence 345666667788899999999999999999999999999988855 345666653
No 166
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=69.21 E-value=25 Score=22.74 Aligned_cols=32 Identities=16% Similarity=0.271 Sum_probs=23.7
Q ss_pred ccHHHHHHHHHHcCCCCCHHHHHHHHHHhcCC
Q 025714 161 IDLMELRDALYSIGYAVPPSVLQLLMDKYDNR 192 (249)
Q Consensus 161 I~~~el~~~l~~~g~~l~~~~~~~l~~~~d~~ 192 (249)
|+.+++.+++...|..++..++..++++-+..
T Consensus 14 l~d~~m~~if~l~~~~vs~~el~a~lrke~~~ 45 (68)
T PF07308_consen 14 LKDDDMIEIFALAGFEVSKAELSAWLRKEDEK 45 (68)
T ss_pred CChHHHHHHHHHcCCccCHHHHHHHHCCCCCc
Confidence 34557778888888888888888888775443
No 167
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=68.42 E-value=9.5 Score=24.26 Aligned_cols=41 Identities=20% Similarity=0.319 Sum_probs=32.3
Q ss_pred HHHcCCCCCcccHHHHHHHHHH----------cCCCCCHHHHHHHHHHhcC
Q 025714 151 ERYDRDRSGKIDLMELRDALYS----------IGYAVPPSVLQLLMDKYDN 191 (249)
Q Consensus 151 ~~~D~d~~G~I~~~el~~~l~~----------~g~~l~~~~~~~l~~~~d~ 191 (249)
++||...+.+|+.++++++.+. -|..+|...+-.++.+-+.
T Consensus 10 RLYDT~~s~YiTL~di~~lV~~g~~~~V~D~ktgeDiT~~iL~QIi~e~e~ 60 (64)
T PF07879_consen 10 RLYDTETSSYITLEDIAQLVREGEDFKVVDAKTGEDITRSILLQIILEEES 60 (64)
T ss_pred ccccCCCceeEeHHHHHHHHHCCCeEEEEECCCCcccHHHHHHHHHHHHHh
Confidence 5789999999999999999984 2667777777777666554
No 168
>cd05833 Ribosomal_P2 Ribosomal protein P2. This subfamily represents the eukaryotic large ribosomal protein P2. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P2 is located in the L12 stalk, with proteins P1, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers). Bacteria may have four or six copies of L7/L12 (two or three homodimers) depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2
Probab=67.87 E-value=36 Score=24.29 Aligned_cols=55 Identities=5% Similarity=0.020 Sum_probs=43.1
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCcccCHHHHHHH
Q 025714 79 VIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADL 139 (249)
Q Consensus 79 l~~~F~~~D~d~~g~I~~~el~~~l~~lg~~~s~~~~~~l~~~~d~~~~~g~i~~~eF~~~ 139 (249)
+..+|-++..-++..++.+++..+|++.|..+....+..+++.+.. .+++|.+..
T Consensus 3 yvaAylL~~l~g~~~pTa~dI~~IL~AaGveVe~~~~~lf~~~L~G------Kdi~eLIa~ 57 (109)
T cd05833 3 YVAAYLLAVLGGNASPSAADVKKILGSVGVEVDDEKLNKVISELEG------KDVEELIAA 57 (109)
T ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHcC------CCHHHHHHH
Confidence 3445666667777899999999999999999999888888887764 556666554
No 169
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=67.45 E-value=14 Score=25.83 Aligned_cols=14 Identities=21% Similarity=0.159 Sum_probs=8.0
Q ss_pred CcccHHHHHHHHHH
Q 025714 159 GKIDLMELRDALYS 172 (249)
Q Consensus 159 G~I~~~el~~~l~~ 172 (249)
..|+++||++++..
T Consensus 79 ~~I~k~eL~efW~q 92 (100)
T PF08414_consen 79 DSITKDELKEFWEQ 92 (100)
T ss_dssp SEE-HHHHHHHHHH
T ss_pred CCcCHHHHHHHHHH
Confidence 55666666666654
No 170
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=67.40 E-value=14 Score=21.57 Aligned_cols=30 Identities=17% Similarity=0.379 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHc-C-CCCCcccHHHHHHHHHH
Q 025714 143 LGQWRAIFERYD-R-DRSGKIDLMELRDALYS 172 (249)
Q Consensus 143 ~~~~~~~F~~~D-~-d~~G~I~~~el~~~l~~ 172 (249)
+..+..+|..|- . ....+|++.||+.+|..
T Consensus 5 i~~iI~vFhkYa~~~Gd~~~Lsk~Elk~Ll~~ 36 (44)
T PF01023_consen 5 IETIIDVFHKYAGKEGDKDTLSKKELKELLEK 36 (44)
T ss_dssp HHHHHHHHHHHHTSSSSTTSEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCCeEcHHHHHHHHHH
Confidence 345677888884 2 34679999999999874
No 171
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=66.98 E-value=31 Score=25.83 Aligned_cols=59 Identities=14% Similarity=0.176 Sum_probs=39.7
Q ss_pred HHHHHHcCCCCCcccHHHHHHHHHHc--CCCCCHHHHHHHHHHhcCCCCCCCcccchHHHHHHHHH
Q 025714 148 AIFERYDRDRSGKIDLMELRDALYSI--GYAVPPSVLQLLMDKYDNRSGSRKLGLSFDSFVECGMV 211 (249)
Q Consensus 148 ~~F~~~D~d~~G~I~~~el~~~l~~~--g~~l~~~~~~~l~~~~d~~~~~~~g~i~~~eF~~~l~~ 211 (249)
-+|...+.| |.++..|...+..-+ .+.++..++..++.....- +...++|-.|...|.+
T Consensus 34 Llf~Vm~AD--G~v~~~E~~a~r~il~~~f~i~~~~l~ali~~~e~~---~~Ea~d~y~fts~l~r 94 (148)
T COG4103 34 LLFHVMEAD--GTVSESEREAFRAILKENFGIDGEELDALIEAGEEA---GYEAIDLYSFTSVLKR 94 (148)
T ss_pred HHHHHHhcc--cCcCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHH
Confidence 467777554 677777665443322 3447888888888877665 6677888888887773
No 172
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=65.85 E-value=9.4 Score=24.81 Aligned_cols=29 Identities=17% Similarity=0.436 Sum_probs=23.9
Q ss_pred CchHHHHHHHHhcCCCCCcccHHHHHHHHH
Q 025714 75 THPDVIRSFEMVDRDRSGFIDENELQQALS 104 (249)
Q Consensus 75 ~~~~l~~~F~~~D~d~~g~I~~~el~~~l~ 104 (249)
.-+++.++|+.+ .++.++|+..||+..|.
T Consensus 4 s~eqv~~aFr~l-A~~KpyVT~~dLr~~l~ 32 (69)
T PF08726_consen 4 SAEQVEEAFRAL-AGGKPYVTEEDLRRSLT 32 (69)
T ss_dssp TCHHHHHHHHHH-CTSSSCEEHHHHHHHS-
T ss_pred CHHHHHHHHHHH-HcCCCcccHHHHHHHcC
Confidence 356789999999 67789999999999864
No 173
>PF07862 Nif11: Nitrogen fixation protein of unknown function; InterPro: IPR012903 This domain is found in the cyanobacteria, and the nitrogen-fixing proteobacterium Azotobacter vinelandii and may be involved in nitrogen fixation, but no role has been assigned [].
Probab=65.75 E-value=22 Score=21.00 Aligned_cols=42 Identities=17% Similarity=0.144 Sum_probs=28.8
Q ss_pred HHHHHHHHcHHHHHHHHHHHcCCCCCcccHHHHHHHHHHcCCCCCHHHH
Q 025714 134 KEFADLWSCLGQWRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVL 182 (249)
Q Consensus 134 ~eF~~~~~~~~~~~~~F~~~D~d~~G~I~~~el~~~l~~~g~~l~~~~~ 182 (249)
..|+..+..-..++.-++.. -+.+++..+.+..|+.+|.+++
T Consensus 7 ~~Fl~~~~~d~~l~~~l~~~-------~~~~e~~~lA~~~Gy~ft~~el 48 (49)
T PF07862_consen 7 KAFLEKVKSDPELREQLKAC-------QNPEEVVALAREAGYDFTEEEL 48 (49)
T ss_pred HHHHHHHhcCHHHHHHHHhc-------CCHHHHHHHHHHcCCCCCHHHh
Confidence 34444444445555555553 2688999999999999998876
No 174
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=65.50 E-value=20 Score=37.65 Aligned_cols=71 Identities=10% Similarity=0.043 Sum_probs=52.1
Q ss_pred CCCCCCchHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCCC----CHHHHHHHHHHhcCCCCCcccCHHHHHHHHHc
Q 025714 70 AFPPGTHPDVIRSFEMVDRDRSGFIDENELQQALSSGYQRF----SLSTIRLLMFLFRNPHDSLRIGPKEFADLWSC 142 (249)
Q Consensus 70 ~l~~~~~~~l~~~F~~~D~d~~g~I~~~el~~~l~~lg~~~----s~~~~~~l~~~~d~~~~~g~i~~~eF~~~~~~ 142 (249)
.|++.+.+++.+++..+|.+..|.|...++..+++.+..++ ..+. +.+.-.... ..++.|+|.+-+..+.+
T Consensus 1410 ~Ls~~d~~~F~~vW~~fDpeatg~I~~~~~~~~lr~L~ppL~~~k~~~~-kli~mdmp~-~~gd~V~f~d~L~aL~~ 1484 (1592)
T KOG2301|consen 1410 GLSEDDFEKFYEAWDEFDPEATQEIPYSDLSAFLRSLDPPLDLGKPNKR-KLISMDLPM-VSGDRVHCLDILFALTK 1484 (1592)
T ss_pred cCCcccHHHHHHHHHhcChhhheeeeHhhHHHHHHhcCCccccCCCCCc-eeeeeecCc-CCCCeeehhhHHHHHHH
Confidence 58999999999999999999999999999999999764322 1111 222222333 56788888887766653
No 175
>PF05872 DUF853: Bacterial protein of unknown function (DUF853); InterPro: IPR008571 Members of this family have a P-loop containing nucleotide triphosphate hydrolases fold. This family is restricted to bacterial proteins, none of which have currently been characterised.
Probab=65.49 E-value=32 Score=31.16 Aligned_cols=75 Identities=11% Similarity=0.181 Sum_probs=50.5
Q ss_pred cccHHHHHHHHHhcCCCCC---HHHHHHHHHHhcCCCCCcccCHHHHHHHHHcHH-HHHHHHHHHcCCCCCcccHHHHHH
Q 025714 93 FIDENELQQALSSGYQRFS---LSTIRLLMFLFRNPHDSLRIGPKEFADLWSCLG-QWRAIFERYDRDRSGKIDLMELRD 168 (249)
Q Consensus 93 ~I~~~el~~~l~~lg~~~s---~~~~~~l~~~~d~~~~~g~i~~~eF~~~~~~~~-~~~~~F~~~D~d~~G~I~~~el~~ 168 (249)
..+..||.-+|-+--+.++ ...+..+|+..|. .+--.|+++++..++..+. +..+.-..| |.|+..-+-.
T Consensus 105 RaTvsemGPlLLsrlL~LNdtQ~gvL~i~F~~ADd-~gLlLlDLkDLra~l~~v~e~~~e~~~~y-----G~is~aS~ga 178 (502)
T PF05872_consen 105 RATVSEMGPLLLSRLLELNDTQEGVLNIVFRIADD-EGLLLLDLKDLRAMLQYVSENAKELSAEY-----GNISSASIGA 178 (502)
T ss_pred EeeHHhhchHHHHHHhccchHHHHHHHHHHHHhcc-CCCccccHHHHHHHHHHHHhhHHHHHHHc-----CCccHHHHHH
Confidence 4677788777754322333 3567778888888 8888889999888887653 333333444 7788877777
Q ss_pred HHHHc
Q 025714 169 ALYSI 173 (249)
Q Consensus 169 ~l~~~ 173 (249)
++|.+
T Consensus 179 I~R~l 183 (502)
T PF05872_consen 179 IQRAL 183 (502)
T ss_pred HHHHH
Confidence 77753
No 176
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=65.24 E-value=20 Score=32.45 Aligned_cols=7 Identities=14% Similarity=0.249 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 025714 98 ELQQALS 104 (249)
Q Consensus 98 el~~~l~ 104 (249)
.|.+-++
T Consensus 497 ~LmaqIR 503 (569)
T KOG3671|consen 497 ALMAQIR 503 (569)
T ss_pred HHHHHHH
Confidence 3333333
No 177
>PLN02223 phosphoinositide phospholipase C
Probab=64.64 E-value=26 Score=32.37 Aligned_cols=67 Identities=9% Similarity=-0.083 Sum_probs=45.4
Q ss_pred HHHHHHHHHHcCCCCCcccHHHHHHHH---HHc-CC-CCCHHHHHHHHHHhcCCCC-----CCCcccchHHHHHHHHH
Q 025714 144 GQWRAIFERYDRDRSGKIDLMELRDAL---YSI-GY-AVPPSVLQLLMDKYDNRSG-----SRKLGLSFDSFVECGMV 211 (249)
Q Consensus 144 ~~~~~~F~~~D~d~~G~I~~~el~~~l---~~~-g~-~l~~~~~~~l~~~~d~~~~-----~~~g~i~~~eF~~~l~~ 211 (249)
+.++.+|..| .++.|.++.+.+.++| .+. |+ ..+.++.+.++..+....+ ...+.++.+.|..+|..
T Consensus 16 ~~v~~~f~~~-~~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~L~s 92 (537)
T PLN02223 16 DLILNFFGNE-FHGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEFLFS 92 (537)
T ss_pred HHHHHHHHHh-hcCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHHhcC
Confidence 4677888888 3667888888888888 433 32 4677777777776543200 02356999999998765
No 178
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=64.46 E-value=21 Score=25.22 Aligned_cols=48 Identities=23% Similarity=0.336 Sum_probs=33.3
Q ss_pred HHHcCCCCCcccHHHHHHHHHH----------cCCCCCHHHHHHHHHHhcCCCCCCCcccc
Q 025714 151 ERYDRDRSGKIDLMELRDALYS----------IGYAVPPSVLQLLMDKYDNRSGSRKLGLS 201 (249)
Q Consensus 151 ~~~D~d~~G~I~~~el~~~l~~----------~g~~l~~~~~~~l~~~~d~~~~~~~g~i~ 201 (249)
++||...+-+|+.++++++.+. -|+.+|...+-.++.+.+.. +...++
T Consensus 10 RLYDT~tS~YITLedi~~lV~~g~~f~V~DakTgeDiT~~iL~QII~E~E~~---g~~~lp 67 (107)
T TIGR01848 10 RLYDTETSSYVTLEDIRDLVREGREFQVVDSKSGDDLTRSILLQIIAEEESG---GEPVLS 67 (107)
T ss_pred cccCCCccceeeHHHHHHHHHCCCeEEEEECCCCchhHHHHHHHHHHHHHhC---CCCCCC
Confidence 4678888888888888888874 25667777777777666654 444444
No 179
>TIGR03798 ocin_TIGR03798 bacteriocin propeptide, TIGR03798 family. This model describes a conserved, fairly long (about 65 residue) propeptide region for a family of putative microcins, that is, bacteriocins of small size. Members of the seed alignment tend to have the Gly-Gly motif as the last two residues of the matched region. This is a cleavage site for a combination processing/export ABC transporter with a peptidase domain.
Probab=64.07 E-value=34 Score=21.60 Aligned_cols=49 Identities=12% Similarity=0.020 Sum_probs=35.9
Q ss_pred HHHHHHHHHcHHHHHHHHHHHcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 025714 133 PKEFADLWSCLGQWRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDK 188 (249)
Q Consensus 133 ~~eF~~~~~~~~~~~~~F~~~D~d~~G~I~~~el~~~l~~~g~~l~~~~~~~l~~~ 188 (249)
+..|+..+..-..++.-++.. .+.+++..+.+..|+.+|.+++......
T Consensus 4 l~~Fl~~~~~d~~L~~~l~~~-------~~~e~~~~lA~~~Gf~ft~~el~~~~~e 52 (64)
T TIGR03798 4 LKAFLEKVKTDPDLREKLKAA-------EDPEDRVAIAKEAGFEFTGEDLKEAGEE 52 (64)
T ss_pred HHHHHHHHHcCHHHHHHHHHc-------CCHHHHHHHHHHcCCCCCHHHHHHHHhh
Confidence 456666666656666666653 4489999999999999999999875433
No 180
>PLN02222 phosphoinositide phospholipase C 2
Probab=63.82 E-value=27 Score=32.66 Aligned_cols=64 Identities=9% Similarity=0.072 Sum_probs=47.7
Q ss_pred chHHHHHHHHhcCCCCCcccHHHHHHHHHhcCC--CCCHHHHHHHHHHhcCCCCCcccCHHHHHHHHH
Q 025714 76 HPDVIRSFEMVDRDRSGFIDENELQQALSSGYQ--RFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWS 141 (249)
Q Consensus 76 ~~~l~~~F~~~D~d~~g~I~~~el~~~l~~lg~--~~s~~~~~~l~~~~d~~~~~g~i~~~eF~~~~~ 141 (249)
..++.++|..+-. ++.|+.++|..+|..... ..+.+.+..++..+......+.++++.|..++.
T Consensus 24 ~~ei~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~ 89 (581)
T PLN02222 24 PREIKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLLHRNGLHLDAFFKYLF 89 (581)
T ss_pred cHHHHHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhc
Confidence 4478888888754 479999999999986443 357788888888764213456799999998874
No 181
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=63.79 E-value=26 Score=22.40 Aligned_cols=43 Identities=14% Similarity=0.220 Sum_probs=34.4
Q ss_pred HHHHHHHcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhc
Q 025714 147 RAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYD 190 (249)
Q Consensus 147 ~~~F~~~D~d~~G~I~~~el~~~l~~~g~~l~~~~~~~l~~~~d 190 (249)
+..|+.+= ..+-.|+.+-++.++..+|.+.++..++.+++.+.
T Consensus 19 r~~~~k~l-~~NPpine~mir~M~~QMG~kpSekqi~Q~m~~mk 61 (64)
T PF03672_consen 19 RKYMEKQL-KENPPINEKMIRAMMMQMGRKPSEKQIKQMMRSMK 61 (64)
T ss_pred HHHHHHHH-HHCCCCCHHHHHHHHHHhCCCccHHHHHHHHHHHH
Confidence 44455542 23568999999999999999999999999998764
No 182
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=63.48 E-value=18 Score=34.39 Aligned_cols=78 Identities=19% Similarity=0.212 Sum_probs=56.0
Q ss_pred CcccCHHHHHHHH--HcHHHHHHHHHHHcCCCCCcccHHHHHHHHHHc--------CCCCCHHHHHHHHHHhcCCCCCCC
Q 025714 128 SLRIGPKEFADLW--SCLGQWRAIFERYDRDRSGKIDLMELRDALYSI--------GYAVPPSVLQLLMDKYDNRSGSRK 197 (249)
Q Consensus 128 ~g~i~~~eF~~~~--~~~~~~~~~F~~~D~d~~G~I~~~el~~~l~~~--------g~~l~~~~~~~l~~~~d~~~~~~~ 197 (249)
++ ++++||. +. ....+++..|..+|. ++|.++.+|+..++... ....+.+....++...+.+ ..
T Consensus 2 ~~-~~~~~~~-~~~~~~d~~l~~~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 75 (646)
T KOG0039|consen 2 EG-ISFQELK-ITDCSYDDKLQTFFDMYDK-GDGKLTEEEVRELIMSSISANWLSLIKKQTEEYAALIMEELDPD---HK 75 (646)
T ss_pred CC-cchhhhc-ccCCChhHHHHHHHHHHhh-hcCCccHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhhhcccc---cc
Confidence 45 8888887 22 225788889999988 89999999999988743 1234455566677777777 66
Q ss_pred cccchHHHHHHHHH
Q 025714 198 LGLSFDSFVECGMV 211 (249)
Q Consensus 198 g~i~~~eF~~~l~~ 211 (249)
+.+.++++...+..
T Consensus 76 ~y~~~~~~~~ll~~ 89 (646)
T KOG0039|consen 76 GYITNEDLEILLLQ 89 (646)
T ss_pred ceeeecchhHHHHh
Confidence 77877777766553
No 183
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=63.24 E-value=39 Score=21.99 Aligned_cols=47 Identities=28% Similarity=0.342 Sum_probs=23.7
Q ss_pred cccHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCCCCCcccchHHHHHHHHHH
Q 025714 160 KIDLMELRDALYSIGYAVPPSVLQLLMDKYDNRSGSRKLGLSFDSFVECGMVV 212 (249)
Q Consensus 160 ~I~~~el~~~l~~~g~~l~~~~~~~l~~~~d~~~~~~~g~i~~~eF~~~l~~~ 212 (249)
.++...|..+|... +..+..+.+...|+.= ..+.|+-+||+..|..+
T Consensus 8 ~~~F~~L~~~l~~~---l~~~~~~~l~~~Y~~~---k~~kIsR~~fvr~lR~I 54 (70)
T PF12174_consen 8 WMPFPMLFSALSKH---LPPSKMDLLQKHYEEF---KKKKISREEFVRKLRQI 54 (70)
T ss_pred cccHHHHHHHHHHH---CCHHHHHHHHHHHHHH---HHCCCCHHHHHHHHHHH
Confidence 34444444444433 4455555555444333 45566666666665543
No 184
>KOG3449 consensus 60S acidic ribosomal protein P2 [Translation, ribosomal structure and biogenesis]
Probab=61.82 E-value=32 Score=24.47 Aligned_cols=55 Identities=9% Similarity=0.128 Sum_probs=44.3
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCcccCHHHHHHH
Q 025714 79 VIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADL 139 (249)
Q Consensus 79 l~~~F~~~D~d~~g~I~~~el~~~l~~lg~~~s~~~~~~l~~~~d~~~~~g~i~~~eF~~~ 139 (249)
+..+|-+++.-++...+..+++++|.+.|.....+.++.++..+.- . +.+|.+.-
T Consensus 3 yvaAYLL~~lgGn~~psa~DikkIl~sVG~E~d~e~i~~visel~G-----K-~i~ElIA~ 57 (112)
T KOG3449|consen 3 YVAAYLLAVLGGNASPSASDIKKILESVGAEIDDERINLVLSELKG-----K-DIEELIAA 57 (112)
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHhCcccCHHHHHHHHHHhcC-----C-CHHHHHHH
Confidence 4566778888888889999999999999999999999999987753 2 56665543
No 185
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=61.82 E-value=11 Score=18.31 Aligned_cols=15 Identities=27% Similarity=0.510 Sum_probs=9.0
Q ss_pred cCCCCCcccHHHHHH
Q 025714 154 DRDRSGKIDLMELRD 168 (249)
Q Consensus 154 D~d~~G~I~~~el~~ 168 (249)
|.|++|.|+.-++.-
T Consensus 1 DvN~DG~vna~D~~~ 15 (21)
T PF00404_consen 1 DVNGDGKVNAIDLAL 15 (21)
T ss_dssp -TTSSSSSSHHHHHH
T ss_pred CCCCCCcCCHHHHHH
Confidence 556777777666643
No 186
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=61.64 E-value=55 Score=31.88 Aligned_cols=12 Identities=8% Similarity=0.177 Sum_probs=5.6
Q ss_pred CcccHHHHHHHH
Q 025714 159 GKIDLMELRDAL 170 (249)
Q Consensus 159 G~I~~~el~~~l 170 (249)
|.|+.+.++.+|
T Consensus 230 ~~It~~~V~~~L 241 (830)
T PRK07003 230 NEVTETAVSGML 241 (830)
T ss_pred CCcCHHHHHHHh
Confidence 345555444443
No 187
>TIGR02675 tape_meas_nterm tape measure domain. Proteins containing this domain are strictly bacterial, including bacteriophage and prophage regions of bacterial genomes. Most members are 800 to 1800 amino acids long, making them among the longest predicted proteins of their respective phage genomes, where they are encoded in tail protein regions. This roughly 80-residue domain described here usually begins between residue 100 and 250. Many members are known or predicted to act as phage tail tape measure proteins, a minor tail component that regulates tail length.
Probab=61.31 E-value=9.4 Score=25.17 Aligned_cols=30 Identities=10% Similarity=0.030 Sum_probs=15.1
Q ss_pred HHHHHHHHHHhcCCCCCcccCHHHHHHHHH
Q 025714 112 LSTIRLLMFLFRNPHDSLRIGPKEFADLWS 141 (249)
Q Consensus 112 ~~~~~~l~~~~d~~~~~g~i~~~eF~~~~~ 141 (249)
.+++..++..+...-..|.|.-+||..++.
T Consensus 12 ~e~~~~~~~ql~Q~~~~Gkv~~ee~n~~~e 41 (75)
T TIGR02675 12 AEEADGALIQLSQMLASGKLRGEEINSLLE 41 (75)
T ss_pred HHHHHHHHHHHHHHHHcCcccHHHHHHHHH
Confidence 344444433332213356777777766654
No 188
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=61.11 E-value=68 Score=24.06 Aligned_cols=87 Identities=14% Similarity=0.064 Sum_probs=60.4
Q ss_pred HHHHHhcCCCCCcccHHHHHHHHH--hcCCCCCHHHHHHHHHHhcCCCCCcccCHHHHHHHHHc-------HHHHHHHHH
Q 025714 81 RSFEMVDRDRSGFIDENELQQALS--SGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSC-------LGQWRAIFE 151 (249)
Q Consensus 81 ~~F~~~D~d~~g~I~~~el~~~l~--~lg~~~s~~~~~~l~~~~d~~~~~g~i~~~eF~~~~~~-------~~~~~~~F~ 151 (249)
-+|..+.. ||.++..|..++.. +-.+.++..++..++..... -+.-.+++..|...+.+ ++-+...|+
T Consensus 34 Llf~Vm~A--DG~v~~~E~~a~r~il~~~f~i~~~~l~ali~~~e~-~~~Ea~d~y~fts~l~r~Ld~e~R~eli~~mwe 110 (148)
T COG4103 34 LLFHVMEA--DGTVSESEREAFRAILKENFGIDGEELDALIEAGEE-AGYEAIDLYSFTSVLKRHLDEEQRLELIGLMWE 110 (148)
T ss_pred HHHHHHhc--ccCcCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 56777665 57777777554443 22357888899999988877 77788999999887763 244555677
Q ss_pred HHcCCCCCcccHHHHHHHHHH
Q 025714 152 RYDRDRSGKIDLMELRDALYS 172 (249)
Q Consensus 152 ~~D~d~~G~I~~~el~~~l~~ 172 (249)
..- .||.++..|-.-+.+.
T Consensus 111 Ia~--ADg~l~e~Ed~vi~Rv 129 (148)
T COG4103 111 IAY--ADGELDESEDHVIWRV 129 (148)
T ss_pred HHH--ccccccHHHHHHHHHH
Confidence 663 4578888877666664
No 189
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=60.82 E-value=6 Score=34.37 Aligned_cols=63 Identities=17% Similarity=0.160 Sum_probs=46.5
Q ss_pred chHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCCCCHHH-HHHHHHHhcCCCCCcccCHHHHHHH
Q 025714 76 HPDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLST-IRLLMFLFRNPHDSLRIGPKEFADL 139 (249)
Q Consensus 76 ~~~l~~~F~~~D~d~~g~I~~~el~~~l~~lg~~~s~~~-~~~l~~~~d~~~~~g~i~~~eF~~~ 139 (249)
-..++++|..+|+.++|+|+..-+..++..++...++.. +..+-..++. ..-|.|-.+.|..-
T Consensus 308 s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N~~vse~a~v~l~~~~l~p-E~~~iil~~d~lg~ 371 (449)
T KOG2871|consen 308 SEQLRRNFHAYDPEDNNFISCSGLQIVMTALNRLVSEPAYVMLMRQPLDP-ESLGIILLEDFLGE 371 (449)
T ss_pred CHHHHhhhhccCccCCCeeecHHHHHHHHHhcccccCHHHHHHhcCccCh-hhcceEEecccccc
Confidence 567899999999999999999999999998885555443 3333345666 66676666665543
No 190
>PHA02335 hypothetical protein
Probab=60.74 E-value=38 Score=23.90 Aligned_cols=31 Identities=19% Similarity=0.061 Sum_probs=21.3
Q ss_pred cccchHHHHHHHHHHHHHHHHhhhcCCCCCc
Q 025714 198 LGLSFDSFVECGMVVKGLTEKFKEKDPRYTG 228 (249)
Q Consensus 198 g~i~~~eF~~~l~~~~~~~~~f~~~d~~~~G 228 (249)
..|+++||..-+.+.+.+.+.|+.+...++=
T Consensus 23 ~sVt~ddf~~DlkRi~yIkrllKRy~~~~~~ 53 (118)
T PHA02335 23 QSVTYDDFEEDLKRFKYIKRLFKRYLNTGEL 53 (118)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhhcCCCCh
Confidence 3577777777777777777777777665553
No 191
>cd08316 Death_FAS_TNFRSF6 Death domain of FAS or TNF receptor superfamily member 6. Death Domain (DD) found in the FS7-associated cell surface antigen (FAS). FAS, also known as TNFRSF6 (TNF receptor superfamily member 6), APT1, CD95, FAS1, or APO-1, together with FADD (Fas-associating via Death Domain) and caspase 8, is an integral part of the death inducing signalling complex (DISC), which plays an important role in the induction of apoptosis and is activated by binding of the ligand FasL to FAS. FAS also plays a critical role in self-tolerance by eliminating cell types (autoreactive T and B cells) that contribute to autoimmunity. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in sign
Probab=60.07 E-value=56 Score=22.75 Aligned_cols=78 Identities=9% Similarity=0.115 Sum_probs=49.4
Q ss_pred cccHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCcccCHHHHHHHHHcHHHHHHHHHHHcCCCCCcccHHHHHHHHHH
Q 025714 93 FIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCLGQWRAIFERYDRDRSGKIDLMELRDALYS 172 (249)
Q Consensus 93 ~I~~~el~~~l~~lg~~~s~~~~~~l~~~~d~~~~~g~i~~~eF~~~~~~~~~~~~~F~~~D~d~~G~I~~~el~~~l~~ 172 (249)
.|...+++.+.+.+| +++..+..+-..... + ..+.-..++. +|..- ....|. ...|.++|+.
T Consensus 17 ~~~~~~wK~faR~lg--lse~~Id~I~~~~~~---d---~~Eq~~qmL~-------~W~~~-~G~~a~--~~~Li~aLr~ 78 (97)
T cd08316 17 VMTLKDVKKFVRKSG--LSEPKIDEIKLDNPQ---D---TAEQKVQLLR-------AWYQS-HGKTGA--YRTLIKTLRK 78 (97)
T ss_pred HcCHHHHHHHHHHcC--CCHHHHHHHHHcCCC---C---hHHHHHHHHH-------HHHHH-hCCCch--HHHHHHHHHH
Confidence 577788888888886 677777776653322 1 1333333332 22222 122233 5888899999
Q ss_pred cCCCCCHHHHHHHHHH
Q 025714 173 IGYAVPPSVLQLLMDK 188 (249)
Q Consensus 173 ~g~~l~~~~~~~l~~~ 188 (249)
++.....+.++.++..
T Consensus 79 ~~l~~~Ad~I~~~l~~ 94 (97)
T cd08316 79 AKLCTKADKIQDIIEA 94 (97)
T ss_pred ccchhHHHHHHHHHHh
Confidence 9999888888887654
No 192
>KOG0871 consensus Class 2 transcription repressor NC2, beta subunit (Dr1) [Transcription]
Probab=59.89 E-value=22 Score=26.64 Aligned_cols=47 Identities=19% Similarity=0.225 Sum_probs=33.5
Q ss_pred HHHHHHHcHHHHHHHHHHHcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHH
Q 025714 135 EFADLWSCLGQWRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLM 186 (249)
Q Consensus 135 eF~~~~~~~~~~~~~F~~~D~d~~G~I~~~el~~~l~~~g~~l~~~~~~~l~ 186 (249)
||+.+++ ..+=+..+.+...+|..+.+..+|..+|+.---+++.+++
T Consensus 46 EFI~liS-----sEAneic~~e~KKTIa~EHV~KALe~LgF~eYiee~~~vl 92 (156)
T KOG0871|consen 46 EFINLIS-----SEANEICNKEAKKTIAPEHVIKALENLGFGEYIEEAEEVL 92 (156)
T ss_pred HHHHHHH-----HHHHHHHhHHhcccCCHHHHHHHHHHcchHHHHHHHHHHH
Confidence 5665555 3466777888889999999999999999763333333333
No 193
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=59.69 E-value=12 Score=27.53 Aligned_cols=73 Identities=18% Similarity=0.067 Sum_probs=44.2
Q ss_pred CCCcccHHHHHHHHHhc--CCCCCHHHHHHHHHHhcCCCCCcccCHHHHHHHHHc-------HHHHHHHHHHHcCCCCCc
Q 025714 90 RSGFIDENELQQALSSG--YQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSC-------LGQWRAIFERYDRDRSGK 160 (249)
Q Consensus 90 ~~g~I~~~el~~~l~~l--g~~~s~~~~~~l~~~~d~~~~~g~i~~~eF~~~~~~-------~~~~~~~F~~~D~d~~G~ 160 (249)
-||.|+..|...+..-+ ...++......++..++. .....+++.+|+..+.. ..-+..++...-.| |.
T Consensus 36 aDG~v~~~E~~~i~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~r~~ll~~l~~ia~AD--G~ 112 (140)
T PF05099_consen 36 ADGEVDPEEIEAIRQLLAERFGLSPEEAEELIELADE-LKQEPIDLEELLRELRDSLSPEEREDLLRMLIAIAYAD--GE 112 (140)
T ss_dssp TTSS--CHHHHHHHHHHHHCGCGSCHHHHHHHHHHCH-HHHHCCHHHHHHHHHCTS--HHHHHHHHHHHHHHCTCT--TC
T ss_pred cCCCCCHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHH-HHhccccHHHHHHHHHHhhchHHHHHHHHHHHHHHhcC--CC
Confidence 47999999987776644 234556667777776665 44456778888766644 23456666666655 55
Q ss_pred ccHHH
Q 025714 161 IDLME 165 (249)
Q Consensus 161 I~~~e 165 (249)
++..|
T Consensus 113 ~~~~E 117 (140)
T PF05099_consen 113 ISPEE 117 (140)
T ss_dssp -SCCH
T ss_pred CCHHH
Confidence 55544
No 194
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.66 E-value=8.3 Score=33.52 Aligned_cols=61 Identities=20% Similarity=0.250 Sum_probs=44.1
Q ss_pred HHHHHHHHHHcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHH-HhcCCCCCCCcccchHHHHH
Q 025714 144 GQWRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMD-KYDNRSGSRKLGLSFDSFVE 207 (249)
Q Consensus 144 ~~~~~~F~~~D~d~~G~I~~~el~~~l~~~g~~l~~~~~~~l~~-~~d~~~~~~~g~i~~~eF~~ 207 (249)
+.++++|+.+|..++|.|+-.-++.++..++..+++.+.=.+++ ..+.+ .-|.|-.++|..
T Consensus 309 ~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N~~vse~a~v~l~~~~l~pE---~~~iil~~d~lg 370 (449)
T KOG2871|consen 309 EQLRRNFHAYDPEDNNFISCSGLQIVMTALNRLVSEPAYVMLMRQPLDPE---SLGIILLEDFLG 370 (449)
T ss_pred HHHHhhhhccCccCCCeeecHHHHHHHHHhcccccCHHHHHHhcCccChh---hcceEEeccccc
Confidence 48999999999999999999999999999886555554433333 34444 555555555544
No 195
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=59.64 E-value=36 Score=23.49 Aligned_cols=51 Identities=10% Similarity=0.030 Sum_probs=30.7
Q ss_pred CCcccHHHHHHHHHHcC--CCCCHHHHHHHHHHhcCCCCCCCcccchHHHHHHHHH
Q 025714 158 SGKIDLMELRDALYSIG--YAVPPSVLQLLMDKYDNRSGSRKLGLSFDSFVECGMV 211 (249)
Q Consensus 158 ~G~I~~~el~~~l~~~g--~~l~~~~~~~l~~~~d~~~~~~~g~i~~~eF~~~l~~ 211 (249)
||.++..|...+-.-+. ..+++++.+.++..+... .....++.+|...+..
T Consensus 13 DG~v~~~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~ 65 (104)
T cd07313 13 DGEYDEEERAAIDRLLAERFGLDAEEAAELLAEAEAL---EEEAPDLYEFTSLIKE 65 (104)
T ss_pred cCCCCHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH---HHhCCCHHHHHHHHHH
Confidence 57777777665544321 236677777777766554 4455667777665543
No 196
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=59.12 E-value=26 Score=30.29 Aligned_cols=26 Identities=19% Similarity=0.235 Sum_probs=15.5
Q ss_pred cccHHHHHHHHHhcCCCCCHHHHHHHH
Q 025714 93 FIDENELQQALSSGYQRFSLSTIRLLM 119 (249)
Q Consensus 93 ~I~~~el~~~l~~lg~~~s~~~~~~l~ 119 (249)
.++..||.+++.... .++...+.+.+
T Consensus 356 plSeAEFEdiM~RNr-aiSSSAIsrAv 381 (498)
T KOG4849|consen 356 PLSEAEFEDIMTRNR-AISSSAISRAV 381 (498)
T ss_pred cchHHHHHHHHhhcc-hhhHHHHHHHh
Confidence 478888888887432 34444444433
No 197
>PRK00523 hypothetical protein; Provisional
Probab=58.31 E-value=35 Score=22.29 Aligned_cols=44 Identities=14% Similarity=0.175 Sum_probs=35.9
Q ss_pred HHHHHHHHcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhc
Q 025714 146 WRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYD 190 (249)
Q Consensus 146 ~~~~F~~~D~d~~G~I~~~el~~~l~~~g~~l~~~~~~~l~~~~d 190 (249)
.+..|+.+= ..+-.|+.+-++.++..+|.+.++..++.+++.+.
T Consensus 26 ark~~~k~l-~~NPpine~mir~M~~QMGqKPSekki~Q~m~~mk 69 (72)
T PRK00523 26 SKKMFKKQI-RENPPITENMIRAMYMQMGRKPSESQIKQVMRSVK 69 (72)
T ss_pred HHHHHHHHH-HHCcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHH
Confidence 445566663 33579999999999999999999999999998763
No 198
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=56.92 E-value=41 Score=21.73 Aligned_cols=31 Identities=3% Similarity=0.047 Sum_probs=23.4
Q ss_pred ccHHHHHHHHHhcCCCCCHHHHHHHHHHhcC
Q 025714 94 IDENELQQALSSGYQRFSLSTIRLLMFLFRN 124 (249)
Q Consensus 94 I~~~el~~~l~~lg~~~s~~~~~~l~~~~d~ 124 (249)
++..++..+++..|+.+++.++..+++.-+.
T Consensus 14 l~d~~m~~if~l~~~~vs~~el~a~lrke~~ 44 (68)
T PF07308_consen 14 LKDDDMIEIFALAGFEVSKAELSAWLRKEDE 44 (68)
T ss_pred CChHHHHHHHHHcCCccCHHHHHHHHCCCCC
Confidence 4556788888888888888888888876544
No 199
>cd04411 Ribosomal_P1_P2_L12p Ribosomal protein P1, P2, and L12p. Ribosomal proteins P1 and P2 are the eukaryotic proteins that are functionally equivalent to bacterial L7/L12. L12p is the archaeal homolog. Unlike other ribosomal proteins, the archaeal L12p and eukaryotic P1 and P2 do not share sequence similarity with their bacterial counterparts. They are part of the ribosomal stalk (called the L7/L12 stalk in bacteria), along with 28S rRNA and the proteins L11 and P0 in eukaryotes (23S rRNA, L11, and L10e in archaea). In bacterial ribosomes, L7/L12 homodimers bind the extended C-terminal helix of L10 to anchor the L7/L12 molecules to the ribosome. Eukaryotic P1/P2 heterodimers and archaeal L12p homodimers are believed to bind the L10 equivalent proteins, eukaryotic P0 and archaeal L10e, in a similar fashion. P1 and P2 (L12p, L7/L12) are the only proteins in the ribosome to occur as multimers, always appearing as sets of dimers. Recent data indicate that most archaeal species contain
Probab=56.90 E-value=68 Score=22.71 Aligned_cols=41 Identities=12% Similarity=0.199 Sum_probs=34.3
Q ss_pred ccHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCcccCHHHHHHHH
Q 025714 94 IDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLW 140 (249)
Q Consensus 94 I~~~el~~~l~~lg~~~s~~~~~~l~~~~d~~~~~g~i~~~eF~~~~ 140 (249)
|+.+++.++|++.|..+....+..+++.+.. .++++.+...
T Consensus 17 ~ta~~I~~IL~aaGveVe~~~~~~~~~aLaG------k~V~eli~~g 57 (105)
T cd04411 17 LTEDKIKELLSAAGAEIEPERVKLFLSALNG------KNIDEVISKG 57 (105)
T ss_pred CCHHHHHHHHHHcCCCcCHHHHHHHHHHHcC------CCHHHHHHHH
Confidence 9999999999999999999999999888754 5667766543
No 200
>PLN02228 Phosphoinositide phospholipase C
Probab=56.83 E-value=62 Score=30.26 Aligned_cols=63 Identities=17% Similarity=0.176 Sum_probs=47.1
Q ss_pred chHHHHHHHHhcCCCCCcccHHHHHHHHHhcCC--CCCHHHHHHHHHHhcCCC----CCcccCHHHHHHHHH
Q 025714 76 HPDVIRSFEMVDRDRSGFIDENELQQALSSGYQ--RFSLSTIRLLMFLFRNPH----DSLRIGPKEFADLWS 141 (249)
Q Consensus 76 ~~~l~~~F~~~D~d~~g~I~~~el~~~l~~lg~--~~s~~~~~~l~~~~d~~~----~~g~i~~~eF~~~~~ 141 (249)
..++.++|..+-. ++.|+.++|..+|..... ..+...+..++..+.. . ..|.++++.|..++.
T Consensus 23 ~~ei~~if~~~s~--~~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~gF~~yl~ 91 (567)
T PLN02228 23 PVSIKRLFEAYSR--NGKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKH-HNVFHHHGLVHLNAFYRYLF 91 (567)
T ss_pred cHHHHHHHHHhcC--CCccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhcc-chhhcccCccCHHHHHHHhc
Confidence 4578888887764 358999999999986532 3566778888888764 3 346799999988873
No 201
>COG2818 Tag 3-methyladenine DNA glycosylase [DNA replication, recombination, and repair]
Probab=56.43 E-value=14 Score=28.91 Aligned_cols=50 Identities=10% Similarity=0.197 Sum_probs=39.4
Q ss_pred HHHHHHcHHHHHHHHHHHcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHH
Q 025714 136 FADLWSCLGQWRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLL 185 (249)
Q Consensus 136 F~~~~~~~~~~~~~F~~~D~d~~G~I~~~el~~~l~~~g~~l~~~~~~~l 185 (249)
|+.++.+.+.++++|..||.++=-..+.+++.++|...|+--....|+.+
T Consensus 47 W~tVL~KRe~freaF~~Fd~~kVA~~~~~dverLl~d~gIIR~r~KI~A~ 96 (188)
T COG2818 47 WLTVLKKREAFREAFHGFDPEKVAAMTEEDVERLLADAGIIRNRGKIKAT 96 (188)
T ss_pred HHHHHHhHHHHHHHHhcCCHHHHHcCCHHHHHHHHhCcchhhhHHHHHHH
Confidence 55666777899999999999999999999999999887764444444443
No 202
>PLN00138 large subunit ribosomal protein LP2; Provisional
Probab=56.23 E-value=73 Score=22.89 Aligned_cols=53 Identities=13% Similarity=0.097 Sum_probs=40.3
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCcccCHHHHHH
Q 025714 80 IRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFAD 138 (249)
Q Consensus 80 ~~~F~~~D~d~~g~I~~~el~~~l~~lg~~~s~~~~~~l~~~~d~~~~~g~i~~~eF~~ 138 (249)
..+|-+.-.-++..++.+++.++|.+.|..+....+..+++.+.. .+++|.+.
T Consensus 4 vaAyll~~l~g~~~pta~dI~~IL~AaGvevd~~~~~~f~~~L~g------K~i~eLIa 56 (113)
T PLN00138 4 VAAYLLAVLGGNTCPSAEDLKDILGSVGADADDDRIELLLSEVKG------KDITELIA 56 (113)
T ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHHcC------CCHHHHHH
Confidence 344555555667789999999999999999988888888887754 45566553
No 203
>KOG3077 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.95 E-value=89 Score=26.00 Aligned_cols=64 Identities=16% Similarity=0.173 Sum_probs=35.6
Q ss_pred HHHHHHHHH-cCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCCCCCcccchHHHHHHHHH
Q 025714 145 QWRAIFERY-DRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYDNRSGSRKLGLSFDSFVECGMV 211 (249)
Q Consensus 145 ~~~~~F~~~-D~d~~G~I~~~el~~~l~~~g~~l~~~~~~~l~~~~d~~~~~~~g~i~~~eF~~~l~~ 211 (249)
.+...|..| |.+.+..|-.+-+..+++.+|+...+-.+-.+...+... .-+.++.+||+.-+..
T Consensus 65 ~l~~~f~~y~d~~d~~~i~~dgi~~fc~dlg~~p~~i~~LvlAwkl~A~---~m~~Fsr~ef~~g~~~ 129 (260)
T KOG3077|consen 65 RLEELFNQYKDPDDDNLIGPDGIEKFCEDLGVEPEDISVLVLAWKLGAA---TMCEFSREEFLKGMTA 129 (260)
T ss_pred HHHHHHHHhcCcccccccChHHHHHHHHHhCCCchhHHHHHHHHHhccc---hhhhhhHHHHHHHHHH
Confidence 344444444 444445667777777777777554444444444444443 5566677777665544
No 204
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=54.75 E-value=53 Score=21.32 Aligned_cols=44 Identities=11% Similarity=0.115 Sum_probs=35.5
Q ss_pred HHHHHHHcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhcC
Q 025714 147 RAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYDN 191 (249)
Q Consensus 147 ~~~F~~~D~d~~G~I~~~el~~~l~~~g~~l~~~~~~~l~~~~d~ 191 (249)
++.++.+=+ ++-.|+.+-++.++..+|.+.++..++++++.+..
T Consensus 26 rk~~~k~lk-~NPpine~~iR~M~~qmGqKpSe~kI~Qvm~~i~k 69 (71)
T COG3763 26 RKQMKKQLK-DNPPINEEMIRMMMAQMGQKPSEKKINQVMRSIIK 69 (71)
T ss_pred HHHHHHHHh-hCCCCCHHHHHHHHHHhCCCchHHHHHHHHHHHHh
Confidence 445555533 35799999999999999999999999999987654
No 205
>PF12995 DUF3879: Domain of unknown function, E. rectale Gene description (DUF3879); InterPro: IPR024540 This entry represents proteins of unknown function found primarily in Firmicutes. The Eubacterium rectale gene appears to be upregulated in the presence of Bacteroides thetaiotaomicron compared to growth in pure culture [].
Probab=54.45 E-value=87 Score=24.09 Aligned_cols=56 Identities=13% Similarity=0.195 Sum_probs=37.5
Q ss_pred ccHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCcccCHHHHHHHHHcHHHHHHHHHHHcCCCC
Q 025714 94 IDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCLGQWRAIFERYDRDRS 158 (249)
Q Consensus 94 I~~~el~~~l~~lg~~~s~~~~~~l~~~~d~~~~~g~i~~~eF~~~~~~~~~~~~~F~~~D~d~~ 158 (249)
|+..+...-|++.|++......+.++...-. .+.|.| |..| ..++.+-+.||.|++
T Consensus 2 ~ns~~~~~~lka~gi~tnskqyka~~~~mm~-~~~~~~-y~~~-------~~iknlm~~yd~dgd 57 (186)
T PF12995_consen 2 INSSSVQEQLKAAGINTNSKQYKAVMSEMMS-AGEGAM-YTNI-------QGIKNLMSQYDKDGD 57 (186)
T ss_pred CChHHHHHHHHhcCCCcChHHHHHHHHHHhc-CCCCce-eehH-------HHHHHHHHhcCCCCc
Confidence 5567788888888888887777777776665 555543 3333 235566777877765
No 206
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=54.33 E-value=44 Score=29.83 Aligned_cols=78 Identities=21% Similarity=0.196 Sum_probs=50.2
Q ss_pred chHHHHHHHHhcCCCCCcccHHHHHHHHHh-cCCCCCHHHHHHHHHHhcCCCCCcccCHHHHHHHHHc------------
Q 025714 76 HPDVIRSFEMVDRDRSGFIDENELQQALSS-GYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSC------------ 142 (249)
Q Consensus 76 ~~~l~~~F~~~D~d~~g~I~~~el~~~l~~-lg~~~s~~~~~~l~~~~d~~~~~g~i~~~eF~~~~~~------------ 142 (249)
.+.++.+-+.+|.|.+|-|+.+|=..+|+. +.+.-+...-.+-| . ..|..|+.++.-..|..
T Consensus 67 ~EAir~iHrqmDDD~nG~Id~~ESdeFlrEdmky~~~~~kr~~~f---H--~dD~~ItVedLWeaW~~Sev~nWT~e~tv 141 (575)
T KOG4403|consen 67 YEAIRDIHRQMDDDHNGSIDVEESDEFLREDMKYRDSTRKRSEKF---H--GDDKHITVEDLWEAWKESEVHNWTNERTV 141 (575)
T ss_pred HHHHHHHHHhcccccCCCcccccchHHHHHHhhcccchhhhhhhc---c--CCccceeHHHHHHHHHhhhhhcchHHHHH
Confidence 456788889999999999999999888884 43332222222222 2 23456777775444422
Q ss_pred --------HHHHHHHHHHHcCCCC
Q 025714 143 --------LGQWRAIFERYDRDRS 158 (249)
Q Consensus 143 --------~~~~~~~F~~~D~d~~ 158 (249)
+-.+.++|+....+|.
T Consensus 142 qWLi~~VeLPqyve~fk~~kv~G~ 165 (575)
T KOG4403|consen 142 QWLINDVELPQYVEAFKAKKVDGK 165 (575)
T ss_pred HHHHHhcccHHHHHHHHhccCCcc
Confidence 3467788888776653
No 207
>cd04411 Ribosomal_P1_P2_L12p Ribosomal protein P1, P2, and L12p. Ribosomal proteins P1 and P2 are the eukaryotic proteins that are functionally equivalent to bacterial L7/L12. L12p is the archaeal homolog. Unlike other ribosomal proteins, the archaeal L12p and eukaryotic P1 and P2 do not share sequence similarity with their bacterial counterparts. They are part of the ribosomal stalk (called the L7/L12 stalk in bacteria), along with 28S rRNA and the proteins L11 and P0 in eukaryotes (23S rRNA, L11, and L10e in archaea). In bacterial ribosomes, L7/L12 homodimers bind the extended C-terminal helix of L10 to anchor the L7/L12 molecules to the ribosome. Eukaryotic P1/P2 heterodimers and archaeal L12p homodimers are believed to bind the L10 equivalent proteins, eukaryotic P0 and archaeal L10e, in a similar fashion. P1 and P2 (L12p, L7/L12) are the only proteins in the ribosome to occur as multimers, always appearing as sets of dimers. Recent data indicate that most archaeal species contain
Probab=53.60 E-value=78 Score=22.41 Aligned_cols=40 Identities=13% Similarity=0.339 Sum_probs=33.7
Q ss_pred ccHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCCCCCcccchHHHHHH
Q 025714 161 IDLMELRDALYSIGYAVPPSVLQLLMDKYDNRSGSRKLGLSFDSFVEC 208 (249)
Q Consensus 161 I~~~el~~~l~~~g~~l~~~~~~~l~~~~d~~~~~~~g~i~~~eF~~~ 208 (249)
|+.+.++.+|...|..++.+.+..+++.+.. .+.++.+..
T Consensus 17 ~ta~~I~~IL~aaGveVe~~~~~~~~~aLaG--------k~V~eli~~ 56 (105)
T cd04411 17 LTEDKIKELLSAAGAEIEPERVKLFLSALNG--------KNIDEVISK 56 (105)
T ss_pred CCHHHHHHHHHHcCCCcCHHHHHHHHHHHcC--------CCHHHHHHH
Confidence 9999999999999999999999999998755 345666653
No 208
>PLN02230 phosphoinositide phospholipase C 4
Probab=53.48 E-value=73 Score=30.01 Aligned_cols=66 Identities=14% Similarity=0.089 Sum_probs=46.6
Q ss_pred CchHHHHHHHHhcCCCCCcccHHHHHHHHHhcCC---CCCHHHHHHHHHHhcC------CCCCcccCHHHHHHHHH
Q 025714 75 THPDVIRSFEMVDRDRSGFIDENELQQALSSGYQ---RFSLSTIRLLMFLFRN------PHDSLRIGPKEFADLWS 141 (249)
Q Consensus 75 ~~~~l~~~F~~~D~d~~g~I~~~el~~~l~~lg~---~~s~~~~~~l~~~~d~------~~~~g~i~~~eF~~~~~ 141 (249)
...+++++|..+-.++ +.++.++|..+|..-.. ..+.+.+..++..+-. .-..+.++++.|..++.
T Consensus 27 p~~ei~~lf~~~s~~~-~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~ 101 (598)
T PLN02230 27 PVADVRDLFEKYADGD-AHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLF 101 (598)
T ss_pred CcHHHHHHHHHHhCCC-CccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHc
Confidence 3568899999986444 79999999999986542 3466677777765422 01245699999988763
No 209
>PLN00138 large subunit ribosomal protein LP2; Provisional
Probab=52.76 E-value=56 Score=23.48 Aligned_cols=44 Identities=18% Similarity=0.168 Sum_probs=36.3
Q ss_pred HHHHHHcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhcC
Q 025714 148 AIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYDN 191 (249)
Q Consensus 148 ~~F~~~D~d~~G~I~~~el~~~l~~~g~~l~~~~~~~l~~~~d~ 191 (249)
.+|-+.-.-++..++.++++.+|...|..+....+..+++.+..
T Consensus 5 aAyll~~l~g~~~pta~dI~~IL~AaGvevd~~~~~~f~~~L~g 48 (113)
T PLN00138 5 AAYLLAVLGGNTCPSAEDLKDILGSVGADADDDRIELLLSEVKG 48 (113)
T ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHHcC
Confidence 34555555677789999999999999999999999999988855
No 210
>PRK01844 hypothetical protein; Provisional
Probab=52.69 E-value=47 Score=21.70 Aligned_cols=44 Identities=14% Similarity=0.207 Sum_probs=35.7
Q ss_pred HHHHHHHHcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhc
Q 025714 146 WRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYD 190 (249)
Q Consensus 146 ~~~~F~~~D~d~~G~I~~~el~~~l~~~g~~l~~~~~~~l~~~~d 190 (249)
.+..|+.+= ..+-.|+.+-++.++..+|.+.++..++.+++.+.
T Consensus 25 ark~~~k~l-k~NPpine~mir~Mm~QMGqkPSekki~Q~m~~mk 68 (72)
T PRK01844 25 ARKYMMNYL-QKNPPINEQMLKMMMMQMGQKPSQKKINQMMSAMN 68 (72)
T ss_pred HHHHHHHHH-HHCCCCCHHHHHHHHHHhCCCccHHHHHHHHHHHH
Confidence 445566663 33579999999999999999999999999998763
No 211
>COG2058 RPP1A Ribosomal protein L12E/L44/L45/RPP1/RPP2 [Translation, ribosomal structure and biogenesis]
Probab=51.39 E-value=86 Score=22.28 Aligned_cols=50 Identities=14% Similarity=0.216 Sum_probs=38.5
Q ss_pred HHHHHcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCCCCCcccchHHHHH
Q 025714 149 IFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYDNRSGSRKLGLSFDSFVE 207 (249)
Q Consensus 149 ~F~~~D~d~~G~I~~~el~~~l~~~g~~l~~~~~~~l~~~~d~~~~~~~g~i~~~eF~~ 207 (249)
++-++..-+. .|+.+.|+.+|...|..+.+..++.+++..+. ++.+|.+.
T Consensus 6 a~llL~~agk-ei~e~~l~~vl~aaGveve~~r~k~lvaaLeg--------~~idE~i~ 55 (109)
T COG2058 6 AYLLLHLAGK-EITEDNLKSVLEAAGVEVEEARAKALVAALEG--------VDIDEVIK 55 (109)
T ss_pred HHHHHHHccC-cCCHHHHHHHHHHcCCCccHHHHHHHHHHhcC--------CCHHHHHH
Confidence 3444444443 99999999999999999999999999988865 35566554
No 212
>PRK06402 rpl12p 50S ribosomal protein L12P; Reviewed
Probab=50.67 E-value=88 Score=22.20 Aligned_cols=32 Identities=19% Similarity=0.315 Sum_probs=29.4
Q ss_pred cccHHHHHHHHHHcCCCCCHHHHHHHHHHhcC
Q 025714 160 KIDLMELRDALYSIGYAVPPSVLQLLMDKYDN 191 (249)
Q Consensus 160 ~I~~~el~~~l~~~g~~l~~~~~~~l~~~~d~ 191 (249)
.|+.+.++.+|...|..+.+..+..+++.+..
T Consensus 16 ~it~e~I~~IL~AAGveVee~~~k~~v~aL~G 47 (106)
T PRK06402 16 EINEDNLKKVLEAAGVEVDEARVKALVAALED 47 (106)
T ss_pred CCCHHHHHHHHHHcCCCccHHHHHHHHHHHcC
Confidence 89999999999999999999999999988754
No 213
>COG2818 Tag 3-methyladenine DNA glycosylase [DNA replication, recombination, and repair]
Probab=49.73 E-value=80 Score=24.84 Aligned_cols=43 Identities=12% Similarity=0.164 Sum_probs=31.5
Q ss_pred chHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHH
Q 025714 76 HPDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLL 118 (249)
Q Consensus 76 ~~~l~~~F~~~D~d~~g~I~~~el~~~l~~lg~~~s~~~~~~l 118 (249)
.+.++++|..||.++--..+.+++..+|...|+.-....++.+
T Consensus 54 Re~freaF~~Fd~~kVA~~~~~dverLl~d~gIIR~r~KI~A~ 96 (188)
T COG2818 54 REAFREAFHGFDPEKVAAMTEEDVERLLADAGIIRNRGKIKAT 96 (188)
T ss_pred HHHHHHHHhcCCHHHHHcCCHHHHHHHHhCcchhhhHHHHHHH
Confidence 4578888999998888888888888888877654444444333
No 214
>KOG4301 consensus Beta-dystrobrevin [Cytoskeleton]
Probab=49.60 E-value=1.7e+02 Score=25.44 Aligned_cols=28 Identities=21% Similarity=0.286 Sum_probs=14.3
Q ss_pred HHHHHHHHHHcCCCCCcccHHHHHHHHHH
Q 025714 144 GQWRAIFERYDRDRSGKIDLMELRDALYS 172 (249)
Q Consensus 144 ~~~~~~F~~~D~d~~G~I~~~el~~~l~~ 172 (249)
++++.+|.... |.+|.+..-.+.++|++
T Consensus 146 dklryIfs~is-ds~gim~~i~~~~fl~e 173 (434)
T KOG4301|consen 146 DKLRYIFSLIS-DSRGIMQEIQRDQFLHE 173 (434)
T ss_pred HHHHHHHHHHc-cchHHHHHHHHHHHHHH
Confidence 45555555552 33455555555555544
No 215
>PF03875 Statherin: Statherin; InterPro: IPR005575 Statherin functions biologically to inhibit the nucleation and growth of calcium phosphate minerals. The N terminus of statherin is highly charged, the glutamic acids of which have been shown to be important in the recognition hydroxyapatite [].
Probab=49.46 E-value=27 Score=19.55 Aligned_cols=12 Identities=33% Similarity=0.731 Sum_probs=6.7
Q ss_pred CCCCCCCCCCCCC
Q 025714 3 NYSGSYSSSQSYA 15 (249)
Q Consensus 3 ~~~~~~~~~~~~~ 15 (249)
+| |+||.=|+++
T Consensus 15 ~~-grygpyqp~p 26 (42)
T PF03875_consen 15 FY-GRYGPYQPFP 26 (42)
T ss_pred cc-cccCCcCCCC
Confidence 45 6677544444
No 216
>TIGR00624 tag DNA-3-methyladenine glycosylase I. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=49.29 E-value=21 Score=27.93 Aligned_cols=53 Identities=9% Similarity=0.171 Sum_probs=42.5
Q ss_pred HHHHHHcHHHHHHHHHHHcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 025714 136 FADLWSCLGQWRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDK 188 (249)
Q Consensus 136 F~~~~~~~~~~~~~F~~~D~d~~G~I~~~el~~~l~~~g~~l~~~~~~~l~~~ 188 (249)
+..++.+.+.++.+|.-||.+.=-..+.+++.+++..-++--....|+.++..
T Consensus 45 W~tIL~Kr~~fr~aF~~Fd~~~VA~~~e~~ie~L~~d~~IIRnr~KI~Avi~N 97 (179)
T TIGR00624 45 WITVLRKRENYRRAFSGFDIVKVARMTDADVERLLQDDGIIRNRGKIEATIAN 97 (179)
T ss_pred HHHHHHhHHHHHHHHcCCCHHHHhCCCHHHHHHHhcCccchhhHHHHHHHHHH
Confidence 55666778899999999999988888999999999877766566667666654
No 217
>PHA02105 hypothetical protein
Probab=48.20 E-value=29 Score=21.48 Aligned_cols=50 Identities=18% Similarity=0.206 Sum_probs=29.2
Q ss_pred cccHHHHHHHHHHc---CCCCCHHHHHHHHHHhcCCCCCCCcccchHHHHHHHH
Q 025714 160 KIDLMELRDALYSI---GYAVPPSVLQLLMDKYDNRSGSRKLGLSFDSFVECGM 210 (249)
Q Consensus 160 ~I~~~el~~~l~~~---g~~l~~~~~~~l~~~~d~~~~~~~g~i~~~eF~~~l~ 210 (249)
.++++|++.++..- .+++..+.++.+-..|..-+- +--.++|+||.+.|-
T Consensus 4 klt~~~~~~a~~~ndq~eyp~~~e~~~ql~svfsipqi-~yvyls~~e~~si~p 56 (68)
T PHA02105 4 KLTKEDWESAKYQNDQNEYPVELELFDQLKTVFSIPQI-KYVYLSYEEFNSIMP 56 (68)
T ss_pred eecHHHHHHHHHcCccccccccHHHHHHHHHhccccce-EEEEEeHHHhccccc
Confidence 46677777777643 345666666666666654311 223567777766543
No 218
>PRK10353 3-methyl-adenine DNA glycosylase I; Provisional
Probab=47.71 E-value=18 Score=28.56 Aligned_cols=53 Identities=11% Similarity=0.240 Sum_probs=41.0
Q ss_pred HHHHHHcHHHHHHHHHHHcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 025714 136 FADLWSCLGQWRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDK 188 (249)
Q Consensus 136 F~~~~~~~~~~~~~F~~~D~d~~G~I~~~el~~~l~~~g~~l~~~~~~~l~~~ 188 (249)
|..++.+.+.++.+|..||.+.=-..+.+++.++|..-++--....|+.++..
T Consensus 46 W~tIL~Kre~fr~aF~~Fd~~~VA~~~e~die~Ll~d~~IIRnr~KI~Avi~N 98 (187)
T PRK10353 46 WITVLKKRENYRACFHQFDPVKVAAMQEEDVERLVQDAGIIRHRGKIQAIIGN 98 (187)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHhCCCHHHHHHHhcCchhHHhHHHHHHHHHH
Confidence 45566777899999999999987888899999999877655556666665553
No 219
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=47.70 E-value=48 Score=26.21 Aligned_cols=74 Identities=20% Similarity=0.237 Sum_probs=34.2
Q ss_pred CCCcccCHHHHHHHHHc---HHHHHHHHHHHcCCCCCcccHH-HHHHHHHHcCCCCCHHHHHHHHHHhcCCCCCCCcccc
Q 025714 126 HDSLRIGPKEFADLWSC---LGQWRAIFERYDRDRSGKIDLM-ELRDALYSIGYAVPPSVLQLLMDKYDNRSGSRKLGLS 201 (249)
Q Consensus 126 ~~~g~i~~~eF~~~~~~---~~~~~~~F~~~D~d~~G~I~~~-el~~~l~~~g~~l~~~~~~~l~~~~d~~~~~~~g~i~ 201 (249)
+=||+|+.+++...+.. ..++..+++ .--+++|+.. -|..++..++..+ ++.++.+.+.+..+ =.
T Consensus 9 DFDGTITl~Ds~~~itdtf~~~e~k~l~~---~vls~tiS~rd~~g~mf~~i~~s~-~Eile~llk~i~Id-------p~ 77 (220)
T COG4359 9 DFDGTITLNDSNDYITDTFGPGEWKALKD---GVLSKTISFRDGFGRMFGSIHSSL-EEILEFLLKDIKID-------PG 77 (220)
T ss_pred cCCCceEecchhHHHHhccCchHHHHHHH---HHhhCceeHHHHHHHHHHhcCCCH-HHHHHHHHhhcccC-------cc
Confidence 33556666665554432 123333322 2234555543 3445555555333 33444444444443 23
Q ss_pred hHHHHHHHH
Q 025714 202 FDSFVECGM 210 (249)
Q Consensus 202 ~~eF~~~l~ 210 (249)
|.||+.++.
T Consensus 78 fKef~e~ik 86 (220)
T COG4359 78 FKEFVEWIK 86 (220)
T ss_pred HHHHHHHHH
Confidence 566666544
No 220
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=47.67 E-value=1.1e+02 Score=22.41 Aligned_cols=43 Identities=14% Similarity=0.164 Sum_probs=24.9
Q ss_pred ccCHHHHHHHHHc-------------HHHHHHHHHHHcCCC--CCcccHHHHHHHHHH
Q 025714 130 RIGPKEFADLWSC-------------LGQWRAIFERYDRDR--SGKIDLMELRDALYS 172 (249)
Q Consensus 130 ~i~~~eF~~~~~~-------------~~~~~~~F~~~D~d~--~G~I~~~el~~~l~~ 172 (249)
.|-|.-|...+.. +..+.++|+....+. +..|+..++..+|..
T Consensus 14 ~IrfsaYRtA~KLR~lQk~~~l~lv~l~~v~~~f~~~~l~~~~d~~l~v~~l~~~L~~ 71 (127)
T PF09068_consen 14 NIRFSAYRTAMKLRFLQKRLCLDLVDLSNVIEAFREHGLNQSNDSSLSVSQLETLLSS 71 (127)
T ss_dssp T-SSHHHHHHHHHHHHHHHTTGGG--HHHHHHHHHHTT---T-TSEEEHHHHHHHHHH
T ss_pred hHHHHHhHHHHHHHHHHHHHhheeeeHHHHHHHHHHcCCCcccCCCCCHHHHHHHHHH
Confidence 3556666655432 245667777765543 367888888877754
No 221
>PF06384 ICAT: Beta-catenin-interacting protein ICAT; InterPro: IPR009428 This family consists of several eukaryotic beta-catenin-interacting (ICAT) proteins. Beta-catenin is a multifunctional protein involved in both cell adhesion and transcriptional activation. Transcription mediated by the beta-catenin/Tcf complex is involved in embryological development and is upregulated in various cancers. ICAT selectively inhibits beta-catenin/Tcf binding in vivo, without disrupting beta-catenin/cadherin interactions [].; GO: 0008013 beta-catenin binding; PDB: 1LUJ_B 1T08_B 1M1E_B.
Probab=47.27 E-value=24 Score=23.46 Aligned_cols=24 Identities=25% Similarity=0.357 Sum_probs=15.1
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHH
Q 025714 164 MELRDALYSIGYAVPPSVLQLLMD 187 (249)
Q Consensus 164 ~el~~~l~~~g~~l~~~~~~~l~~ 187 (249)
-|+..+|+.+|+.+++++..-+-.
T Consensus 20 vEIL~ALrkLge~Ls~eE~~FL~~ 43 (78)
T PF06384_consen 20 VEILTALRKLGEKLSPEEEAFLEA 43 (78)
T ss_dssp HHHHHHHHHTT----HHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHH
Confidence 466778999999999998765543
No 222
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=47.13 E-value=57 Score=29.20 Aligned_cols=9 Identities=11% Similarity=0.161 Sum_probs=4.3
Q ss_pred HHHHHHhcC
Q 025714 80 IRSFEMVDR 88 (249)
Q Consensus 80 ~~~F~~~D~ 88 (249)
-.+|..+..
T Consensus 265 ~AlFaqlNq 273 (480)
T KOG2675|consen 265 GALFAQLNQ 273 (480)
T ss_pred HHHHHHHhc
Confidence 345555543
No 223
>PF13608 Potyvirid-P3: Protein P3 of Potyviral polyprotein
Probab=46.62 E-value=20 Score=32.45 Aligned_cols=93 Identities=10% Similarity=0.153 Sum_probs=48.7
Q ss_pred chHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHH----hcCCCCCcccCHHHHHHHHHcHHHHHHHHH
Q 025714 76 HPDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFL----FRNPHDSLRIGPKEFADLWSCLGQWRAIFE 151 (249)
Q Consensus 76 ~~~l~~~F~~~D~d~~g~I~~~el~~~l~~lg~~~s~~~~~~l~~~----~d~~~~~g~i~~~eF~~~~~~~~~~~~~F~ 151 (249)
...+..+| .+-....+.-+.+||...++...-.+. +.++.++.. +.. ...+.+.++..+++++. +--
T Consensus 288 ~~~i~~ly-~~~~~~~~~pt~eEF~e~v~~~~p~L~-~~~~~~~~~~~V~hQa-K~~~e~~lEkIiAf~aL------~~M 358 (445)
T PF13608_consen 288 EDEIEHLY-MLCKKHGKLPTEEEFLEYVEEVNPELL-EFAEEMIEEEEVEHQA-KTASEKNLEKIIAFVAL------LMM 358 (445)
T ss_pred HHHHHHHH-HHHHHhCCCCCHHHHHHHHHhcCchHH-HHHHHHhCCCcEEecC-CChHHHHHHHHHHHHHH------HHH
Confidence 34556666 555556688888899888886532221 122222211 111 22445666666655543 223
Q ss_pred HHcCCCCCcccH--HHHHHHHHHcCCCC
Q 025714 152 RYDRDRSGKIDL--MELRDALYSIGYAV 177 (249)
Q Consensus 152 ~~D~d~~G~I~~--~el~~~l~~~g~~l 177 (249)
.||.+++..|-+ ..|+.++..+|..+
T Consensus 359 ~FD~ERSD~VyKiLnKlK~v~st~~~~V 386 (445)
T PF13608_consen 359 MFDAERSDCVYKILNKLKGVFSTMGQDV 386 (445)
T ss_pred HhCchhhHHHHHHHHHHHHHHhccCCCc
Confidence 456665555432 45666666666543
No 224
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=46.24 E-value=64 Score=19.28 Aligned_cols=39 Identities=10% Similarity=0.155 Sum_probs=30.3
Q ss_pred HHHHHHHHHHcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q 025714 144 GQWRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKY 189 (249)
Q Consensus 144 ~~~~~~F~~~D~d~~G~I~~~el~~~l~~~g~~l~~~~~~~l~~~~ 189 (249)
..|...|.. +...+..++..+...+| ++...|..+|..-
T Consensus 13 ~~Le~~f~~-----~~~P~~~~~~~la~~~~--l~~~qV~~WF~nr 51 (59)
T cd00086 13 EELEKEFEK-----NPYPSREEREELAKELG--LTERQVKIWFQNR 51 (59)
T ss_pred HHHHHHHHh-----CCCCCHHHHHHHHHHHC--cCHHHHHHHHHHH
Confidence 345556665 56899999999998888 8889999888754
No 225
>KOG3557 consensus Epidermal growth factor receptor kinase substrate [Signal transduction mechanisms]
Probab=46.20 E-value=38 Score=31.79 Aligned_cols=48 Identities=19% Similarity=0.195 Sum_probs=34.4
Q ss_pred chHHHHHHHHHHHHHHHHhhhc-----------CCCCCceeee-----cHHHHHHHHhhccccc
Q 025714 201 SFDSFVECGMVVKGLTEKFKEK-----------DPRYTGSATL-----TYESFMSIVIPFIVSY 248 (249)
Q Consensus 201 ~~~eF~~~l~~~~~~~~~f~~~-----------d~~~~G~i~~-----~~~~~~~~~~~~~~~~ 248 (249)
.|++...++.+|+....+++.+ -..+.|.+|+ .+.+|+.+.++|++++
T Consensus 276 ~fDDIE~FvaRLQkAAeA~reLe~Rkr~~K~~k~~pgeG~LTlRarpP~e~EfvD~fqK~KlsF 339 (721)
T KOG3557|consen 276 VFDDIESFVARLQKAAEAARELEQRKRGRKSKKRAPGEGLLTLRARPPSEAEFVDCFQKIKLSF 339 (721)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCCceeEeecCCCchHHHHHHHHHHHHHH
Confidence 3555556666777666666433 3367799988 7799999999998864
No 226
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=45.94 E-value=43 Score=21.78 Aligned_cols=16 Identities=25% Similarity=0.221 Sum_probs=8.5
Q ss_pred CCCcccHHHHHHHHHH
Q 025714 157 RSGKIDLMELRDALYS 172 (249)
Q Consensus 157 ~~G~I~~~el~~~l~~ 172 (249)
+.+.|+++||.+.++.
T Consensus 38 k~~kIsR~~fvr~lR~ 53 (70)
T PF12174_consen 38 KKKKISREEFVRKLRQ 53 (70)
T ss_pred HHCCCCHHHHHHHHHH
Confidence 3455555555555554
No 227
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=45.72 E-value=53 Score=19.40 Aligned_cols=32 Identities=22% Similarity=0.500 Sum_probs=23.3
Q ss_pred CCccc-HHHHHHHHHHcCCCCCHHHHHHHHHHh
Q 025714 158 SGKID-LMELRDALYSIGYAVPPSVLQLLMDKY 189 (249)
Q Consensus 158 ~G~I~-~~el~~~l~~~g~~l~~~~~~~l~~~~ 189 (249)
.|.|+ ..++.+.|+..|+.++++.++.+++..
T Consensus 15 ~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~~ 47 (48)
T PF11848_consen 15 RGLISEVKPLLDRLQQAGFRISPKLIEEILRRA 47 (48)
T ss_pred cCChhhHHHHHHHHHHcCcccCHHHHHHHHHHc
Confidence 47776 455555666678899999998888754
No 228
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=45.68 E-value=38 Score=26.64 Aligned_cols=38 Identities=21% Similarity=0.202 Sum_probs=22.8
Q ss_pred cCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhcC
Q 025714 154 DRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYDN 191 (249)
Q Consensus 154 D~d~~G~I~~~el~~~l~~~g~~l~~~~~~~l~~~~d~ 191 (249)
..|.+|.++.++|.+.++.-+..++.+++++++..-++
T Consensus 26 ~~d~~G~v~v~dLL~~~~~~~~~~t~~~i~~vV~~~~K 63 (186)
T PF01885_consen 26 VMDPDGWVSVDDLLRALRFKGLWVTEEDIREVVETDDK 63 (186)
T ss_dssp ---TT--EEHHHHHHHHHHT-TT--HHHHHHHHHH-SS
T ss_pred ccCCCCCEeHHHHHHHHHHcCCCCCHHHHHHHHhhCCC
Confidence 45677888888888888776767888888888876544
No 229
>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]
Probab=45.38 E-value=2.5e+02 Score=25.91 Aligned_cols=12 Identities=8% Similarity=0.171 Sum_probs=5.7
Q ss_pred ccchHHHHHHHH
Q 025714 199 GLSFDSFVECGM 210 (249)
Q Consensus 199 ~i~~~eF~~~l~ 210 (249)
.|+|++..+-|.
T Consensus 545 kVDf~qL~DNL~ 556 (817)
T KOG1925|consen 545 KVDFEQLTDNLG 556 (817)
T ss_pred hccHHHHHHHHH
Confidence 445555544444
No 230
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed
Probab=45.25 E-value=77 Score=31.81 Aligned_cols=29 Identities=7% Similarity=0.114 Sum_probs=17.3
Q ss_pred CCCcccCHHHHHHHH--HcHHHHHHHHHHHc
Q 025714 126 HDSLRIGPKEFADLW--SCLGQWRAIFERYD 154 (249)
Q Consensus 126 ~~~g~i~~~eF~~~~--~~~~~~~~~F~~~D 154 (249)
...|+|+|..++... ..+.+.-.+-..|+
T Consensus 165 ~~GgKVSFThlI~kAvv~AL~~~P~mNasy~ 195 (1228)
T PRK12270 165 TRGGKVSFTHLIGYALVQALKAFPNMNRHYA 195 (1228)
T ss_pred ccCCcccHHHHHHHHHHHHHHhCchhhceee
Confidence 567899999987543 23444444444444
No 231
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=45.16 E-value=36 Score=21.72 Aligned_cols=37 Identities=11% Similarity=0.116 Sum_probs=31.9
Q ss_pred CCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCC
Q 025714 90 RSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHD 127 (249)
Q Consensus 90 ~~g~I~~~el~~~l~~lg~~~s~~~~~~l~~~~d~~~~ 127 (249)
.++-++..++.+.|...|..++...++..++.++. ++
T Consensus 10 ~~~P~g~~~l~~~L~~~g~~~se~avRrrLr~me~-~G 46 (66)
T PF08461_consen 10 SDKPLGRKQLAEELKLRGEELSEEAVRRRLRAMER-DG 46 (66)
T ss_pred cCCCCCHHHHHHHHHhcChhhhHHHHHHHHHHHHH-CC
Confidence 45679999999999988999999999999998877 44
No 232
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=45.14 E-value=2e+02 Score=28.63 Aligned_cols=64 Identities=11% Similarity=0.265 Sum_probs=47.5
Q ss_pred hHHHHHHHHhcCCCCCcccHHHHHHHHHhc----------CCCCCHHHHHHHHHHhcCCCC----CcccCHHHHHHHHH
Q 025714 77 PDVIRSFEMVDRDRSGFIDENELQQALSSG----------YQRFSLSTIRLLMFLFRNPHD----SLRIGPKEFADLWS 141 (249)
Q Consensus 77 ~~l~~~F~~~D~d~~g~I~~~el~~~l~~l----------g~~~s~~~~~~l~~~~d~~~~----~g~i~~~eF~~~~~ 141 (249)
.++.++|..+-.++.-+++.++|.++|+.- .-.+....++.|+..+.. +. .|+++.+-|+..+.
T Consensus 221 ~eie~iF~ki~~~~kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liekyEp-~~~~a~~gqms~dgf~ryl~ 298 (1189)
T KOG1265|consen 221 PEIEEIFRKISGKKKPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEKYEP-NSDNAEKGQMSTDGFVRYLM 298 (1189)
T ss_pred hhHHHHHHHhccCCCccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHHcCC-chhhhhccccchhhhHHHhh
Confidence 467888888888888889999999998732 224567788888888765 43 67788888876654
No 233
>PF13551 HTH_29: Winged helix-turn helix
Probab=44.10 E-value=54 Score=22.65 Aligned_cols=52 Identities=17% Similarity=0.042 Sum_probs=40.2
Q ss_pred CCCCCchHHHHHHHHhcCCCCCcccHHHHHHHH--HhcCCCCCHHHHHHHHHHh
Q 025714 71 FPPGTHPDVIRSFEMVDRDRSGFIDENELQQAL--SSGYQRFSLSTIRLLMFLF 122 (249)
Q Consensus 71 l~~~~~~~l~~~F~~~D~d~~g~I~~~el~~~l--~~lg~~~s~~~~~~l~~~~ 122 (249)
+++++.+.+.+++.....++...++..++...| ...+..++...+..++...
T Consensus 58 l~~~~~~~l~~~~~~~p~~g~~~~t~~~l~~~l~~~~~~~~~s~~ti~r~L~~~ 111 (112)
T PF13551_consen 58 LSEEQRAQLIELLRENPPEGRSRWTLEELAEWLIEEEFGIDVSPSTIRRILKRA 111 (112)
T ss_pred CCHHHHHHHHHHHHHCCCCCCCcccHHHHHHHHHHhccCccCCHHHHHHHHHHC
Confidence 778888888888886555533578999999855 4578899999999988753
No 234
>PF07128 DUF1380: Protein of unknown function (DUF1380); InterPro: IPR009811 This family consists of several hypothetical bacterial proteins of around 140 residues in length. Members of this family seem to be specific to Enterobacteria. The function of this family is unknown.
Probab=43.02 E-value=41 Score=25.09 Aligned_cols=33 Identities=6% Similarity=0.106 Sum_probs=27.0
Q ss_pred cccHHHHHHHHHHcCCCCCHHHHHHHHHHhcCC
Q 025714 160 KIDLMELRDALYSIGYAVPPSVLQLLMDKYDNR 192 (249)
Q Consensus 160 ~I~~~el~~~l~~~g~~l~~~~~~~l~~~~d~~ 192 (249)
..+.++++.+...+.+.+|+++++.++..++.-
T Consensus 26 IWT~eDV~~~a~gme~~lTd~E~~aVL~~I~~~ 58 (139)
T PF07128_consen 26 IWTREDVRALADGMEYNLTDDEARAVLARIGDI 58 (139)
T ss_pred EecHHHHHHHHhcCCCCCCHHHHHHHHHHHhcC
Confidence 346788888888888889999999999988763
No 235
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=42.79 E-value=17 Score=26.13 Aligned_cols=34 Identities=15% Similarity=0.039 Sum_probs=23.0
Q ss_pred CCCHHHHHHHHHHhcCCCCCcccCHHHHHHHHHcH
Q 025714 109 RFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCL 143 (249)
Q Consensus 109 ~~s~~~~~~l~~~~d~~~~~g~i~~~eF~~~~~~~ 143 (249)
.+++++++.++..+-. +..|+|.|.||+.-+...
T Consensus 3 iLtDeQFdrLW~e~Pv-n~~GrLkY~eFL~kfs~e 36 (118)
T PF08976_consen 3 ILTDEQFDRLWNEMPV-NAKGRLKYQEFLSKFSSE 36 (118)
T ss_dssp ---HHHHHHHHTTS-B--TTS-EEHHHHHHHT---
T ss_pred cccHHHhhhhhhhCcC-CccCCEeHHHHHHHcccc
Confidence 3678899999999888 999999999999887654
No 236
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=42.52 E-value=94 Score=28.31 Aligned_cols=60 Identities=17% Similarity=0.094 Sum_probs=43.3
Q ss_pred HHHHhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHh---c----CCCCCcccCHHHHHHHHH
Q 025714 82 SFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLF---R----NPHDSLRIGPKEFADLWS 141 (249)
Q Consensus 82 ~F~~~D~d~~g~I~~~el~~~l~~lg~~~s~~~~~~l~~~~---d----~~~~~g~i~~~eF~~~~~ 141 (249)
+|..+-....++|....|..+|++.|+.-+..-++.+++.. + .....+.++-+.|..++.
T Consensus 91 LFyLiaegq~ekipihKFiTALkstGLrtsDPRLk~mMd~mKd~dq~~~e~S~gw~LdKDlFKkcI~ 157 (622)
T KOG0506|consen 91 LFYLIAEGQSEKIPIHKFITALKSTGLRTSDPRLKDMMDEMKDVDQEENESSSGWLLDKDLFKKCIF 157 (622)
T ss_pred hhHHhhcCCcCcccHHHHHHHHHHcCCCcCCchHHHHHHHHHHHHhhhcccccceeecHHHHHHhhc
Confidence 46666655679999999999999999977765665555443 3 113356788888988763
No 237
>KOG4070 consensus Putative signal transduction protein p25 [General function prediction only; Signal transduction mechanisms]
Probab=42.33 E-value=48 Score=25.10 Aligned_cols=66 Identities=8% Similarity=0.049 Sum_probs=39.8
Q ss_pred chHHHHHHHHhcCCCCC-----cccHHHHHHHHHhcCC----CCCHHHHHHHHHHhcCCCCCcccCHHHHHHHHHc
Q 025714 76 HPDVIRSFEMVDRDRSG-----FIDENELQQALSSGYQ----RFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSC 142 (249)
Q Consensus 76 ~~~l~~~F~~~D~d~~g-----~I~~~el~~~l~~lg~----~~s~~~~~~l~~~~d~~~~~g~i~~~eF~~~~~~ 142 (249)
+..+.+.|..|-.-++- .|+-..+.++++.++. .++...+..+|..+.. ..-+.++|++|...+..
T Consensus 11 ~a~~~~~f~~Fa~fGd~~asg~em~gkn~~KlcKdc~V~DgK~vT~tdt~i~fsKvkg-~~~~~~tf~~fkkal~e 85 (180)
T KOG4070|consen 11 MAGLEESFRAFAKFGDSKASGTEMNGKNWDKLCKDCKVIDGKSVTGTDTDIVFSKVKG-KKARTITFEEFKKALEE 85 (180)
T ss_pred hhhHHHHHHHHHHcCCccccccccccccHHHHHhhcCcccCCcccccccceeeeeccc-cccccccHHHHHHHHHH
Confidence 55567777777655432 4556667777775542 3444455555655554 45567888888766653
No 238
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=42.18 E-value=42 Score=21.40 Aligned_cols=36 Identities=8% Similarity=0.118 Sum_probs=31.7
Q ss_pred CCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhcCC
Q 025714 157 RSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYDNR 192 (249)
Q Consensus 157 ~~G~I~~~el~~~l~~~g~~l~~~~~~~l~~~~d~~ 192 (249)
.++.++..++.+.|...|+.++++.+...++.++.+
T Consensus 10 ~~~P~g~~~l~~~L~~~g~~~se~avRrrLr~me~~ 45 (66)
T PF08461_consen 10 SDKPLGRKQLAEELKLRGEELSEEAVRRRLRAMERD 45 (66)
T ss_pred cCCCCCHHHHHHHHHhcChhhhHHHHHHHHHHHHHC
Confidence 457899999999999889999999999999998876
No 239
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=42.11 E-value=3.2e+02 Score=27.33 Aligned_cols=124 Identities=8% Similarity=0.051 Sum_probs=67.6
Q ss_pred CCCCCCCchHHHHHHHHhcCC------------------------CC----CcccHHHHHHHHH--------hcCCCCCH
Q 025714 69 SAFPPGTHPDVIRSFEMVDRD------------------------RS----GFIDENELQQALS--------SGYQRFSL 112 (249)
Q Consensus 69 ~~l~~~~~~~l~~~F~~~D~d------------------------~~----g~I~~~el~~~l~--------~lg~~~s~ 112 (249)
+.|+++....|.+.|..+-.. ++ -.|+..+|..+++ .+.-.++.
T Consensus 715 P~Ls~eA~~~i~~~Yv~mR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iT~RqLEsLIRLsEA~AK~rLs~~Vt~ 794 (915)
T PTZ00111 715 PKLSDEAKKVITREYVKMRQGNFQTSNLDELEHAQEDDDDDLYYQSSGTRMIYVSSRMISSIIRISVSLARMRLSTVVTP 794 (915)
T ss_pred CCCCHHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCcccccHHHHHHHHHHHHHHhhhcCcCcccH
Confidence 457777777777777654431 11 2588999988887 12334556
Q ss_pred HHHHHHHHHhcC------CC-CCcccCHHHHHHHH-----HcHHHHHHHHHHH-----cCCCCCcccHHHHHHHHHH---
Q 025714 113 STIRLLMFLFRN------PH-DSLRIGPKEFADLW-----SCLGQWRAIFERY-----DRDRSGKIDLMELRDALYS--- 172 (249)
Q Consensus 113 ~~~~~l~~~~d~------~~-~~g~i~~~eF~~~~-----~~~~~~~~~F~~~-----D~d~~G~I~~~el~~~l~~--- 172 (249)
+.+...++.+.. .+ .+|.|+++....-. ..++.+..+++.+ ..++.+.+..+|+.+.+..
T Consensus 795 ~Dv~~Ai~L~~~sl~~~~~DpetG~iD~d~~~~G~s~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 874 (915)
T PTZ00111 795 ADALQAVQIVKSSTFQSLVDPTTGKIDFDQLHQGITTNKMQQLNQMYEQVLSVLTRSSNQDSNKSLDLNEVLSLCHKTFK 874 (915)
T ss_pred HHHHHHHHHHHHHHhhhcccccCCcccceeeccCCcHHHHHHHHHHHHHHHHHHHhhhccccCCceeHHHHHHHHHhhcc
Confidence 666655554431 12 47888776542111 1122333322222 1133466888888877632
Q ss_pred ----cCCCCCHHHHHHHHHHhcCC
Q 025714 173 ----IGYAVPPSVLQLLMDKYDNR 192 (249)
Q Consensus 173 ----~g~~l~~~~~~~l~~~~d~~ 192 (249)
-...+++++++++++.+...
T Consensus 875 ~~~~~~~~i~~~~~~~~l~~L~~~ 898 (915)
T PTZ00111 875 DNRDHKDGEIYKLISEVLNKMVQE 898 (915)
T ss_pred ccchhccCCCHHHHHHHHHHHHhC
Confidence 12236666777766666543
No 240
>PF10873 DUF2668: Protein of unknown function (DUF2668); InterPro: IPR022640 Members in this family of proteins are annotated as cysteine and tyrosine-rich protein 1, however currently no function is known [].
Probab=41.65 E-value=68 Score=24.07 Aligned_cols=11 Identities=18% Similarity=0.313 Sum_probs=5.0
Q ss_pred CCCCCCCCCCC
Q 025714 18 APSLPETHNNS 28 (249)
Q Consensus 18 ~p~~p~~~~~~ 28 (249)
.|.+||+..+.
T Consensus 110 yP~apPpysy~ 120 (155)
T PF10873_consen 110 YPAAPPPYSYD 120 (155)
T ss_pred cCCCCCCcccc
Confidence 34444444444
No 241
>PHA02771 hypothetical protein; Provisional
Probab=41.50 E-value=39 Score=23.10 Aligned_cols=14 Identities=14% Similarity=0.192 Sum_probs=7.2
Q ss_pred CCHHHHHHHHHHhc
Q 025714 177 VPPSVLQLLMDKYD 190 (249)
Q Consensus 177 l~~~~~~~l~~~~d 190 (249)
+|+++++++++..+
T Consensus 32 ite~ey~ELi~n~~ 45 (90)
T PHA02771 32 VSYNQFEEIIKDGD 45 (90)
T ss_pred ecHHHHHHHHcCCc
Confidence 45555555555443
No 242
>COG2058 RPP1A Ribosomal protein L12E/L44/L45/RPP1/RPP2 [Translation, ribosomal structure and biogenesis]
Probab=41.25 E-value=1.3e+02 Score=21.41 Aligned_cols=41 Identities=15% Similarity=0.155 Sum_probs=35.0
Q ss_pred cccHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCcccCHHHHHHH
Q 025714 93 FIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADL 139 (249)
Q Consensus 93 ~I~~~el~~~l~~lg~~~s~~~~~~l~~~~d~~~~~g~i~~~eF~~~ 139 (249)
.|+.+.+..+|...|..+.+..++.++..+.. ++++|.+.-
T Consensus 16 ei~e~~l~~vl~aaGveve~~r~k~lvaaLeg------~~idE~i~~ 56 (109)
T COG2058 16 EITEDNLKSVLEAAGVEVEEARAKALVAALEG------VDIDEVIKN 56 (109)
T ss_pred cCCHHHHHHHHHHcCCCccHHHHHHHHHHhcC------CCHHHHHHH
Confidence 89999999999999999999999999887765 577776554
No 243
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=40.81 E-value=1.1e+02 Score=21.43 Aligned_cols=61 Identities=15% Similarity=0.237 Sum_probs=34.7
Q ss_pred HHHHHHHHHcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCCCCCcccchHHHHHHHH
Q 025714 145 QWRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYDNRSGSRKLGLSFDSFVECGM 210 (249)
Q Consensus 145 ~~~~~F~~~D~d~~G~I~~~el~~~l~~~g~~l~~~~~~~l~~~~d~~~~~~~g~i~~~eF~~~l~ 210 (249)
.+..-|..+-. +|.|....|-+++ |..-+.+-..++|..+....++....|+.+|..++..
T Consensus 31 ~VE~RFd~La~--dG~L~rs~Fg~CI---GM~dSkeFA~eLFdALaRrr~i~~~~I~k~eL~efW~ 91 (100)
T PF08414_consen 31 EVEKRFDKLAK--DGLLPRSDFGECI---GMKDSKEFAGELFDALARRRGIKGDSITKDELKEFWE 91 (100)
T ss_dssp HHHHHHHHH-B--TTBEEGGGHHHHH---T--S-HHHHHHHHHHHHHHTT--SSEE-HHHHHHHHH
T ss_pred HHHHHHHHhCc--CCcccHHHHHHhc---CCcccHHHHHHHHHHHHHhcCCccCCcCHHHHHHHHH
Confidence 44556666655 6888888887775 4445666666666665432111456788888777543
No 244
>cd07176 terB tellurite resistance protein terB. This family contains uncharacterized bacterial proteins involved in tellurium resistance. The prototype of this CD is the Kp-terB protein from Klebsiella pneumoniae, whose 3D structure was recently determined. The biological function of terB and the mechanism responsible for tellurium resistance are unknown.
Probab=40.61 E-value=69 Score=22.09 Aligned_cols=72 Identities=15% Similarity=0.029 Sum_probs=35.3
Q ss_pred CCcccHHHHHHHHHhcC--CCC---CHHHHHHHHHHhcCCCCCcccCHHHHHHHHHc-------HHHHHHHHHHHcCCCC
Q 025714 91 SGFIDENELQQALSSGY--QRF---SLSTIRLLMFLFRNPHDSLRIGPKEFADLWSC-------LGQWRAIFERYDRDRS 158 (249)
Q Consensus 91 ~g~I~~~el~~~l~~lg--~~~---s~~~~~~l~~~~d~~~~~g~i~~~eF~~~~~~-------~~~~~~~F~~~D~d~~ 158 (249)
||.++..|...+.+.+. ..+ ....+..++...-. .- -..+..++...+.. ..-+..++..... |
T Consensus 16 DG~v~~~E~~~i~~~l~~~~~l~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ia~a--D 91 (111)
T cd07176 16 DGDIDDAELQAIEALLRSLPVLSGFDRERLIALLDKLLA-LL-RPEGLAALLKAAAKLLPPELRETAFAVAVDIAAA--D 91 (111)
T ss_pred ccCCCHHHHHHHHHHHHcCccccCCCHHHHHHHHHHHHH-HH-HHhhHHHHHHHHHHhCCHHHHHHHHHHHHHHHHc--c
Confidence 58888888777776543 222 33444444443322 10 03344555444432 1234444555544 3
Q ss_pred CcccHHHH
Q 025714 159 GKIDLMEL 166 (249)
Q Consensus 159 G~I~~~el 166 (249)
|.++..|-
T Consensus 92 G~~~~~E~ 99 (111)
T cd07176 92 GEVDPEER 99 (111)
T ss_pred CCCCHHHH
Confidence 56666554
No 245
>COG2036 HHT1 Histones H3 and H4 [Chromatin structure and dynamics]
Probab=40.60 E-value=1.2e+02 Score=20.87 Aligned_cols=78 Identities=10% Similarity=0.089 Sum_probs=47.3
Q ss_pred cHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCcccCHHH---HHHHHHc--HHHHHHHHHHHcCCCCCcccHHHHHHH
Q 025714 95 DENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKE---FADLWSC--LGQWRAIFERYDRDRSGKIDLMELRDA 169 (249)
Q Consensus 95 ~~~el~~~l~~lg~~~s~~~~~~l~~~~d~~~~~g~i~~~e---F~~~~~~--~~~~~~~F~~~D~d~~G~I~~~el~~~ 169 (249)
...+....++.....++..-++++++.... . +|+-.- +..++.. ..-...+-......+--+|..+++..+
T Consensus 5 ~~~~~r~~~~~~~~~Lp~apv~Ri~r~~~~-~---Rvs~~A~~~l~~~~e~~~~~i~~~A~~~A~ha~RKTV~~~DI~la 80 (91)
T COG2036 5 GLKEIRRYQRSTDLLLPKAPVRRILRKAGA-E---RVSSSAIEELQEALEEYLEEIAEDAVELAEHAKRKTVKAEDIKLA 80 (91)
T ss_pred hHHHHHhhhhhhhhhcCchHHHHHHHHHhH-H---HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHH
Confidence 344555666665556666667777766554 3 444332 2222222 133455566667788889999999999
Q ss_pred HHHcCCC
Q 025714 170 LYSIGYA 176 (249)
Q Consensus 170 l~~~g~~ 176 (249)
++.+|..
T Consensus 81 ~~~~~~~ 87 (91)
T COG2036 81 LKRLGRR 87 (91)
T ss_pred HHHhccc
Confidence 8887643
No 246
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=40.48 E-value=2.3e+02 Score=24.08 Aligned_cols=114 Identities=10% Similarity=0.143 Sum_probs=65.0
Q ss_pred cccCHHHHHHHHHc------------HHHHHHHHHHHcCCCCCcccHHHHHH-HH---HHcCCCCCHHHHHHHHHHhcCC
Q 025714 129 LRIGPKEFADLWSC------------LGQWRAIFERYDRDRSGKIDLMELRD-AL---YSIGYAVPPSVLQLLMDKYDNR 192 (249)
Q Consensus 129 g~i~~~eF~~~~~~------------~~~~~~~F~~~D~d~~G~I~~~el~~-~l---~~~g~~l~~~~~~~l~~~~d~~ 192 (249)
..|+.+.+..++.. -+.-...|+.+....-+..+...+.. .+ +.+|..++.+++-.+++.....
T Consensus 46 ~~i~~~~W~~~Fd~~WPlv~~~~~~yW~~R~~Fl~lLn~~~p~~y~~~~~~~DYf~lK~s~g~~Lt~~Dli~FL~~~i~~ 125 (292)
T PF13929_consen 46 KKINIENWKKFFDSHWPLVDPSETAYWSLRLKFLKLLNIADPQNYSVRRFINDYFLLKKSMGCELTKEDLISFLKLVIIN 125 (292)
T ss_pred cccCHHHHHHHHHhcCCCCCCCccchHHHHHHHHHHHhhcCcccCCHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhc
Confidence 35666666666532 01122344444455556666665544 33 2579999999998888875443
Q ss_pred CCCCCcccchHHHHHHHHHHHHHHHHhhhcCCCCCceeeecHHHHHHHHhhccc
Q 025714 193 SGSRKLGLSFDSFVECGMVVKGLTEKFKEKDPRYTGSATLTYESFMSIVIPFIV 246 (249)
Q Consensus 193 ~~~~~g~i~~~eF~~~l~~~~~~~~~f~~~d~~~~G~i~~~~~~~~~~~~~~~~ 246 (249)
-. .++..+|.+++..=..+..+.+.|+..+.+ +.| +.-.+.+..++.-.|
T Consensus 126 ~~-~~k~~~Y~~LVk~N~~Vv~aL~L~~~~~~~--~~I-i~d~evislLL~sMv 175 (292)
T PF13929_consen 126 LS-SNKSFNYWDLVKRNKIVVEALKLYDGLNPD--ESI-IFDEEVISLLLKSMV 175 (292)
T ss_pred cc-cccchHHHHHHHhhHHHHHHHHHhhccCcc--cce-eeChHHHHHHHHHHH
Confidence 21 445666888876555555556666655555 444 233345555544443
No 247
>PF11593 Med3: Mediator complex subunit 3 fungal; InterPro: IPR020998 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents the subunit Med3, which is a physical target for Cyc8-Tup1, a yeast transcriptional co-repressor []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=40.47 E-value=58 Score=28.43 Aligned_cols=13 Identities=23% Similarity=0.450 Sum_probs=6.2
Q ss_pred ccchHHHHHHHHH
Q 025714 199 GLSFDSFVECGMV 211 (249)
Q Consensus 199 ~i~~~eF~~~l~~ 211 (249)
+|-|.||+..|..
T Consensus 42 RL~FNeFi~tma~ 54 (379)
T PF11593_consen 42 RLQFNEFIQTMAN 54 (379)
T ss_pred HHHHHHHHHHHHH
Confidence 4455555554443
No 248
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=40.45 E-value=56 Score=25.56 Aligned_cols=34 Identities=24% Similarity=0.263 Sum_probs=18.8
Q ss_pred CCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q 025714 156 DRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKY 189 (249)
Q Consensus 156 d~~G~I~~~el~~~l~~~g~~l~~~~~~~l~~~~ 189 (249)
|.+|.+..++|.+.++.-+..++.+.+++++..-
T Consensus 29 d~~G~v~v~~Ll~~~~~~~~~~t~~~l~~vV~~d 62 (179)
T PRK00819 29 DEEGWVDIDALIEALAKAYKWVTRELLEAVVESD 62 (179)
T ss_pred CCCCCEEHHHHHHHHHHccCCCCHHHHHHHHHcC
Confidence 4556666666665555433445666666555543
No 249
>TIGR01639 P_fal_TIGR01639 Plasmodium falciparum uncharacterized domain TIGR01639. This model represents a conserved sequence region of about 60 amino acids found in over 40 predicted proteins of Plasmodium falciparum. It is not found elsewhere, including closely related species such as Plasmodium yoelii. No member of this family is characterized.
Probab=39.71 E-value=95 Score=19.44 Aligned_cols=34 Identities=15% Similarity=0.193 Sum_probs=27.4
Q ss_pred CCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhcC
Q 025714 158 SGKIDLMELRDALYSIGYAVPPSVLQLLMDKYDN 191 (249)
Q Consensus 158 ~G~I~~~el~~~l~~~g~~l~~~~~~~l~~~~d~ 191 (249)
+-.+|.+||.+.+..++..++..++-.++..+-.
T Consensus 7 s~~lTeEEl~~~i~~L~~~~~~~dm~~IW~~v~~ 40 (61)
T TIGR01639 7 SKKLSKEELNELINSLDEIPNRNDMLIIWNQVHG 40 (61)
T ss_pred hHHccHHHHHHHHHhhcCCCCHHHHHHHHHHHHH
Confidence 3468889999999999888888888888877644
No 250
>cd05831 Ribosomal_P1 Ribosomal protein P1. This subfamily represents the eukaryotic large ribosomal protein P1. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P1 is located in the L12 stalk, with proteins P2, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers) and bacteria may have four or six copies (two or three homodimers), depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2A, and
Probab=39.67 E-value=1.2e+02 Score=21.37 Aligned_cols=43 Identities=9% Similarity=-0.045 Sum_probs=32.6
Q ss_pred CCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCcccCHHHHHHH
Q 025714 91 SGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADL 139 (249)
Q Consensus 91 ~g~I~~~el~~~l~~lg~~~s~~~~~~l~~~~d~~~~~g~i~~~eF~~~ 139 (249)
+-.|+.+++..+|++.|.......+..+++.+.. .++++++..
T Consensus 15 ~~~~Tae~I~~ilkAaGveve~~~~~~f~~~L~g------k~i~elIa~ 57 (103)
T cd05831 15 GIEITADNINALLKAAGVNVEPYWPGLFAKALEG------KDIKDLLSN 57 (103)
T ss_pred CCCCCHHHHHHHHHHcCCcccHHHHHHHHHHHcC------CCHHHHhhc
Confidence 4579999999999999988888777777776654 556666543
No 251
>PF01698 FLO_LFY: Floricaula / Leafy protein; InterPro: IPR002910 This family consists of various plant development proteins which are homologues of Floricaula (FLO) and leafy (LFY) proteins which are floral meristem identity proteins. Mutations in the sequences of these proteins affect flower and leaf development.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2VY1_A 2VY2_A.
Probab=39.37 E-value=9.9 Score=33.20 Aligned_cols=12 Identities=8% Similarity=-0.047 Sum_probs=0.0
Q ss_pred chHHHHHHHHhc
Q 025714 76 HPDVIRSFEMVD 87 (249)
Q Consensus 76 ~~~l~~~F~~~D 87 (249)
...|.++|+.+-
T Consensus 48 ~~~LEdLF~~YG 59 (386)
T PF01698_consen 48 LRGLEDLFQGYG 59 (386)
T ss_dssp ------------
T ss_pred hhhHHHHHhhcc
Confidence 446666666544
No 252
>PF03352 Adenine_glyco: Methyladenine glycosylase; InterPro: IPR005019 This family of methyladenine glycosylases includes DNA-3-methyladenine glycosylase I (3.2.2.20 from EC) which acts as a base excision repair enzyme by severing the glycosylic bond of numerous damaged bases. The enzyme is constitutively expressed and is specific for the alkylated 3-methyladenine DNA.; GO: 0008725 DNA-3-methyladenine glycosylase I activity, 0006284 base-excision repair; PDB: 2OFI_A 2OFK_A 2JG6_A 4AIA_E 4AI5_C 4AI4_A 1LMZ_A 1P7M_A 1NKU_A.
Probab=39.35 E-value=19 Score=28.12 Aligned_cols=54 Identities=11% Similarity=0.278 Sum_probs=39.3
Q ss_pred HHHHHHcHHHHHHHHHHHcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q 025714 136 FADLWSCLGQWRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKY 189 (249)
Q Consensus 136 F~~~~~~~~~~~~~F~~~D~d~~G~I~~~el~~~l~~~g~~l~~~~~~~l~~~~ 189 (249)
|..++.+...++.+|.-||.+.=-..+.+++.+++..-++--....|+.++..+
T Consensus 41 W~~Il~Kr~~~r~aF~~Fd~~~vA~~~e~~ie~l~~d~~iIRnr~KI~Avi~NA 94 (179)
T PF03352_consen 41 WSTILKKREAFREAFAGFDPEKVAKMDEEDIERLMQDPGIIRNRRKIRAVINNA 94 (179)
T ss_dssp HHHHHHTHHHHHHHTGGGHHHHHHT--HHHHHHHTTSTTSS--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHcCCHHHHHHHhcCcchhhhHHHHHHHHHHH
Confidence 455667788999999999998877888889988888777666677777666554
No 253
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=38.32 E-value=50 Score=17.80 Aligned_cols=16 Identities=31% Similarity=0.331 Sum_probs=9.8
Q ss_pred CcccCHHHHHHHHHcH
Q 025714 128 SLRIGPKEFADLWSCL 143 (249)
Q Consensus 128 ~g~i~~~eF~~~~~~~ 143 (249)
.|.|+++|++.+..+.
T Consensus 2 ~~~i~~~~~~d~a~rv 17 (33)
T PF09373_consen 2 SGTISKEEYLDMASRV 17 (33)
T ss_pred CceecHHHHHHHHHHH
Confidence 4566666666666543
No 254
>PF01325 Fe_dep_repress: Iron dependent repressor, N-terminal DNA binding domain; InterPro: IPR022687 The DtxR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 65 residues present in metalloregulators of the DtxR/MntR family. The family is named after Corynebacterium diphtheriae DtxR, an iron-specific diphtheria toxin repressor, and Bacillus subtilis MntR, a manganese transport regulator. Iron-responsive metalloregulators such as DtxR and IdeR occur in Gram-positive bacteria of the high GC branch, while manganese-responsive metalloregulators like MntR are described in diverse genera of Gram-positive and Gram-negative bacteria and also in Archaea [].The metalloregulators like DtxR/MntR contain the DNA-binding DtxR-type HTH domain usually in the N-terminal part. The C-terminal part contains a dimerisation domain with two metal-binding sites, although the primary metal-binding site is less conserved in the Mn(II)-regulators. Fe(II)-regulated proteins contain an SH3-like domain as a C-terminal extension, which is absent in Mn(II)-regulated MntR [, ]. Metal-ion dependent regulators orchestrate the virulence of several important human pathogens. The DtxR protein regulates the expression of diphtheria toxinin response to environmental iron concentrations. Furthermore, DtxR and IdeR control iron uptake []. Homeostasis of manganese, which is an essential nutrient, is regulated by MntR. A typical DtxR-type metalloregulator binds two divalent metal effectors per monomer, upon which allosteric changes occur that moderate binding to the cognate DNA operators. Iron-bound DtxR homodimers bind to an interrupted palindrome of 19 bp, protecting a sequence of ~30 bp. The crystal structures of iron-regulated and manganese-regulated repressors show that the DNA binding domain contains three alpha-helices and a pair of antiparallel beta-strands. Helices 2 and 3 comprise the helix-turn-helix motif and the beta-strands are called the wing []. This wHTH topology is similar to the lysR-type HTH (see PDOC00043 from PROSITEDOC). Most DtxR-type metalloregulators bind as dimers to the DNA major groove. Several proteins are known to contain a DtxR-type HTH domain. These include- Corynebacterium diphtheriae DtxR, a diphtheria toxin repressor [], which regulates the expression of the high-affinity iron uptake system, other iron-sensitive genes, and the bacteriophage tox gene. Metal-bound DtxR represses transcription by binding the tox operator; if iron is limiting, conformational changes of the wHTH disrupt DNA-binding and the diphtheria toxin is produced. Mycobacterium tuberculosis IdeR, an iron-dependent regulator that is essential for this pathogen. The regulator represses genes for iron acquisition and activates iron storage genes, and is a positive regulator of oxidative stress responses []. Bacillus subtilis MntR, a manganese transport regulator, binds Mn2+ as an effector and is a transcriptional repressor of transporters for the import of manganese. Treponema pallidum troR, a metal-dependent transcriptional repressor. Archaeoglobus fulgidus MDR1 (troR), a metal-dependent transcriptional repressor, which negatively regulates its own transcription. This entry covers the entire DtxR-type HTH domain.; GO: 0005506 iron ion binding; PDB: 3HRT_B 3HRS_A 3HRU_B 2X4H_D 1ON1_B 2HYF_C 2F5E_A 3R60_B 1ON2_B 2F5F_A ....
Probab=38.05 E-value=82 Score=19.59 Aligned_cols=47 Identities=11% Similarity=0.223 Sum_probs=35.2
Q ss_pred CCCCCchHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhcC
Q 025714 71 FPPGTHPDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRN 124 (249)
Q Consensus 71 l~~~~~~~l~~~F~~~D~d~~g~I~~~el~~~l~~lg~~~s~~~~~~l~~~~d~ 124 (249)
|++....-|+.+|.... +.+.++..++...| ..+...+..++..+..
T Consensus 2 Lt~~~e~YL~~Iy~l~~--~~~~v~~~~iA~~L-----~vs~~tvt~ml~~L~~ 48 (60)
T PF01325_consen 2 LTESEEDYLKAIYELSE--EGGPVRTKDIAERL-----GVSPPTVTEMLKRLAE 48 (60)
T ss_dssp CSCHHHHHHHHHHHHHH--CTSSBBHHHHHHHH-----TS-HHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHc--CCCCccHHHHHHHH-----CCChHHHHHHHHHHHH
Confidence 44455566778888766 67889999999888 5778888888888755
No 255
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=37.94 E-value=76 Score=20.28 Aligned_cols=33 Identities=15% Similarity=0.130 Sum_probs=29.1
Q ss_pred CCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhc
Q 025714 91 SGFIDENELQQALSSGYQRFSLSTIRLLMFLFR 123 (249)
Q Consensus 91 ~g~I~~~el~~~l~~lg~~~s~~~~~~l~~~~d 123 (249)
+-.|+.+-++..+...|..+|+..++.+.+...
T Consensus 29 NPpine~mir~M~~QMG~kpSekqi~Q~m~~mk 61 (64)
T PF03672_consen 29 NPPINEKMIRAMMMQMGRKPSEKQIKQMMRSMK 61 (64)
T ss_pred CCCCCHHHHHHHHHHhCCCccHHHHHHHHHHHH
Confidence 457999999999999999999999999887653
No 256
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=37.84 E-value=99 Score=29.84 Aligned_cols=42 Identities=17% Similarity=0.150 Sum_probs=21.2
Q ss_pred HHHhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhcC
Q 025714 83 FEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRN 124 (249)
Q Consensus 83 F~~~D~d~~g~I~~~el~~~l~~lg~~~s~~~~~~l~~~~d~ 124 (249)
++.||..++|.|..-+|+-.+..+.....++.++.+|.....
T Consensus 476 lNvyD~~R~g~irvls~ki~~i~lck~~leek~~ylF~~vA~ 517 (966)
T KOG4286|consen 476 LNVYDTGRTGRIRVLSFKIGIISLCKAHLEDKYRYLFKQVAS 517 (966)
T ss_pred HHhcccCCCcceEEeeehhhHHHHhcchhHHHHHHHHHHHcC
Confidence 345555555555555555555544444444444455555443
No 257
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=37.67 E-value=47 Score=29.69 Aligned_cols=13 Identities=38% Similarity=0.575 Sum_probs=6.2
Q ss_pred CCcccHHHHHHHH
Q 025714 91 SGFIDENELQQAL 103 (249)
Q Consensus 91 ~g~I~~~el~~~l 103 (249)
+-.|+..|+++..
T Consensus 344 ~~Vi~~~e~kqsv 356 (480)
T KOG2675|consen 344 NLVIDDAELKQSV 356 (480)
T ss_pred ceeeeeccccceE
Confidence 3445555554443
No 258
>PRK06402 rpl12p 50S ribosomal protein L12P; Reviewed
Probab=37.45 E-value=1.5e+02 Score=21.05 Aligned_cols=41 Identities=15% Similarity=0.228 Sum_probs=34.4
Q ss_pred cccHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCcccCHHHHHHH
Q 025714 93 FIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADL 139 (249)
Q Consensus 93 ~I~~~el~~~l~~lg~~~s~~~~~~l~~~~d~~~~~g~i~~~eF~~~ 139 (249)
.||.+++..+|++.|..+....+..++..+.. +++++.+.-
T Consensus 16 ~it~e~I~~IL~AAGveVee~~~k~~v~aL~G------kdIeElI~~ 56 (106)
T PRK06402 16 EINEDNLKKVLEAAGVEVDEARVKALVAALED------VNIEEAIKK 56 (106)
T ss_pred CCCHHHHHHHHHHcCCCccHHHHHHHHHHHcC------CCHHHHHHh
Confidence 89999999999999999999988888887765 566676643
No 259
>PF10897 DUF2713: Protein of unknown function (DUF2713); InterPro: IPR020404 This entry contains proteins with no known function. In some organisms this represents the C-terminal domain of a fusion protein with YjbL.
Probab=37.41 E-value=78 Score=25.14 Aligned_cols=38 Identities=18% Similarity=0.173 Sum_probs=28.7
Q ss_pred CcccchHHHHHHHHHH------------------HHHHHHhhhcCCCCCceeeecH
Q 025714 197 KLGLSFDSFVECGMVV------------------KGLTEKFKEKDPRYTGSATLTY 234 (249)
Q Consensus 197 ~g~i~~~eF~~~l~~~------------------~~~~~~f~~~d~~~~G~i~~~~ 234 (249)
.|.++|+.++.-|..+ +.+...-+.+|.+.+|.|-+-.
T Consensus 175 ~geldFn~iL~~Mk~~~~Egk~d~~~iTKM~~Aa~kLI~F~qSfDPdSte~I~I~~ 230 (246)
T PF10897_consen 175 KGELDFNDILDKMKLQVNEGKLDPDIITKMRDAAPKLIKFVQSFDPDSTEPIKIGK 230 (246)
T ss_pred cCCCcHHHHHHHHHHhhccCCcCcHHHHHHHHhhHHHHHHHHhcCCCCcCceeeec
Confidence 3667777777766653 5777888899999999997643
No 260
>COG3797 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.01 E-value=1.1e+02 Score=23.79 Aligned_cols=82 Identities=18% Similarity=0.253 Sum_probs=48.2
Q ss_pred HHHHHHHcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCCCCCcccchHHHHHHHHHHHHHHHHhhhcCCCC
Q 025714 147 RAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYDNRSGSRKLGLSFDSFVECGMVVKGLTEKFKEKDPRY 226 (249)
Q Consensus 147 ~~~F~~~D~d~~G~I~~~el~~~l~~~g~~l~~~~~~~l~~~~d~~~~~~~g~i~~~eF~~~l~~~~~~~~~f~~~d~~~ 226 (249)
..+++..+..+...+-+.||+.++..+|+.- ++.++ ..|.|-|+.=...-.....+..+|...=.-+
T Consensus 5 vALLr~InVGgg~kV~MAdLka~~~dlGf~~----v~T~i---------aSGNlvf~s~~~~~el~~klE~afe~~fg~~ 71 (178)
T COG3797 5 VALLRGVNVGGGRKVVMADLKAALTDLGFAN----VRTYI---------ASGNLVFESEAGAAELEAKLEAAFEKRFGRH 71 (178)
T ss_pred hhhhheeeecCCceEeHHHHHHHHHHcCcch----hhHhh---------hcCCEEEEcCCChHHHHHHHHHHHHHHcCCC
Confidence 3456667777788999999999999998532 11111 2233333332221122245666666665556
Q ss_pred CceeeecHHHHHHHH
Q 025714 227 TGSATLTYESFMSIV 241 (249)
Q Consensus 227 ~G~i~~~~~~~~~~~ 241 (249)
...+-.+.++|.-.+
T Consensus 72 ~dilVrs~~~~~~i~ 86 (178)
T COG3797 72 VDILVRSAEDWETIA 86 (178)
T ss_pred ccEEEeeHHHHHHHH
Confidence 666666777776544
No 261
>PF12419 DUF3670: SNF2 Helicase protein ; InterPro: IPR022138 This domain family is found in bacteria, archaea and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF00271 from PFAM, PF00176 from PFAM. Most of the proteins in this family are annotated as SNF2 helicases but there is little accompanying literature to confirm this.
Probab=36.92 E-value=69 Score=23.83 Aligned_cols=49 Identities=12% Similarity=0.156 Sum_probs=36.1
Q ss_pred CCCcccHHHHHHHHHHc-------C--CCCCHHHHHHHHHHhcCCCCCCCc-ccchHHHHHH
Q 025714 157 RSGKIDLMELRDALYSI-------G--YAVPPSVLQLLMDKYDNRSGSRKL-GLSFDSFVEC 208 (249)
Q Consensus 157 ~~G~I~~~el~~~l~~~-------g--~~l~~~~~~~l~~~~d~~~~~~~g-~i~~~eF~~~ 208 (249)
|+..|+.+||.+++..- | ..+..++++.+.+.+... ..+ .+++.|-+..
T Consensus 80 Gd~~Ls~eEf~~L~~~~~~LV~~rg~WV~ld~~~l~~~~~~~~~~---~~~~~lt~~e~Lr~ 138 (141)
T PF12419_consen 80 GDEELSEEEFEQLVEQKRPLVRFRGRWVELDPEELRRALAFLEKA---PKGEKLTLAEALRA 138 (141)
T ss_pred CCEECCHHHHHHHHHcCCCeEEECCEEEEECHHHHHHHHHHHHhc---cccCCCCHHHHHHH
Confidence 56789999999888753 1 247888899888888875 434 4888777653
No 262
>cd07894 Adenylation_RNA_ligase Adenylation domain of RNA circularization proteins. RNA circularization proteins are capable of circularizing RNA molecules in an ATP-dependent reaction. RNA circularization may protect RNA from exonuclease activity. This model comprises the adenylation domain, the minimal catalytic unit that is common to all members of the ATP-dependent DNA ligase family, and the carboxy-terminal extension of RNA circularization protein that serves as a dimerization module. ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation of nicked nucleic acid substrates using the high energy nucleotide of ATP as a cofactor in a three step reaction mechanism. The adenylation domain binds ATP and contains many active site residues.
Probab=36.83 E-value=80 Score=27.51 Aligned_cols=90 Identities=9% Similarity=0.008 Sum_probs=45.0
Q ss_pred HHHhcCCCCCcccHHHHHHHHHhcCCCCC----------HHHHHHHHHHhcCCCCCcccCH--------HHHHHHHHcHH
Q 025714 83 FEMVDRDRSGFIDENELQQALSSGYQRFS----------LSTIRLLMFLFRNPHDSLRIGP--------KEFADLWSCLG 144 (249)
Q Consensus 83 F~~~D~d~~g~I~~~el~~~l~~lg~~~s----------~~~~~~l~~~~d~~~~~g~i~~--------~eF~~~~~~~~ 144 (249)
|+..+.+..+.++..+...+|..++.... ..++..++..+....+.|.|-- --|....++..
T Consensus 131 FDI~~~~~~~~lp~~eR~~lLe~lg~~~v~~~~~~~~~d~~~l~~~l~~~~~~G~EGVVlK~~~~~~~~~Ky~t~~~~~~ 210 (342)
T cd07894 131 FDIRKKNTGRPLPVEERRELLEKYGLPTVRLFGEFTADEIEELKEIIRELDKEGREGVVLKDPDMRVPPLKYTTSYSNCS 210 (342)
T ss_pred EeeEEcCCCCCCCHHHHHHHHHhcCCCCcceEEEEecCCHHHHHHHHHHHHHCCCceEEEeccccccCcceeecCCCCcH
Confidence 34444454567888999999988865321 2566666666554122333221 11222223334
Q ss_pred HHHHHHHHHcCCCCCcccHHHHHHHHHH
Q 025714 145 QWRAIFERYDRDRSGKIDLMELRDALYS 172 (249)
Q Consensus 145 ~~~~~F~~~D~d~~G~I~~~el~~~l~~ 172 (249)
.++.+|+.+-.-+-+.+...=++.++..
T Consensus 211 di~~~~~~~~d~~~~~~~~Ri~R~~~~~ 238 (342)
T cd07894 211 DIRYAFRYPFDLGRDFFFSRIVREGFQS 238 (342)
T ss_pred HHHHHhhhccccCchHHHHHHHHHHHHH
Confidence 5555555543334444444444444443
No 263
>TIGR00135 gatC glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, C subunit. This model has been revised to remove the candidate sequence from Methanococcus jannaschii, now part of a related model.
Probab=36.81 E-value=65 Score=21.96 Aligned_cols=30 Identities=10% Similarity=0.042 Sum_probs=23.5
Q ss_pred ccHHHHHHHHHHcCCCCCHHHHHHHHHHhc
Q 025714 161 IDLMELRDALYSIGYAVPPSVLQLLMDKYD 190 (249)
Q Consensus 161 I~~~el~~~l~~~g~~l~~~~~~~l~~~~d 190 (249)
|+.++++.+.+-..+.+++++++.+...+.
T Consensus 1 i~~~~v~~lA~La~L~l~eee~~~~~~~l~ 30 (93)
T TIGR00135 1 ISDEEVKHLAKLARLELSEEEAESFAGDLD 30 (93)
T ss_pred CCHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 577888888887788899999887776653
No 264
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=36.80 E-value=52 Score=29.12 Aligned_cols=59 Identities=14% Similarity=0.134 Sum_probs=39.6
Q ss_pred chHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCcccCHHHHHH
Q 025714 76 HPDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFAD 138 (249)
Q Consensus 76 ~~~l~~~F~~~D~d~~g~I~~~el~~~l~~lg~~~s~~~~~~l~~~~d~~~~~g~i~~~eF~~ 138 (249)
...+.++|..+.. -+|+|+-..-+..+- +..++...+-+++...|. +.+|.++-+||.-
T Consensus 443 k~~yde~fy~l~p-~~gk~sg~~ak~~mv--~sklpnsvlgkiwklad~-d~dg~ld~eefal 501 (532)
T KOG1954|consen 443 KPTYDEIFYTLSP-VNGKLSGRNAKKEMV--KSKLPNSVLGKIWKLADI-DKDGMLDDEEFAL 501 (532)
T ss_pred CcchHhhhhcccc-cCceeccchhHHHHH--hccCchhHHHhhhhhhcC-CcccCcCHHHHHH
Confidence 3355666765553 467777766665553 235667778888888887 8888888888753
No 265
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=36.31 E-value=3.9e+02 Score=25.52 Aligned_cols=30 Identities=7% Similarity=0.162 Sum_probs=13.0
Q ss_pred hHHHHHHHHhcCCCCCcccHHHHHHHHHhc
Q 025714 77 PDVIRSFEMVDRDRSGFIDENELQQALSSG 106 (249)
Q Consensus 77 ~~l~~~F~~~D~d~~g~I~~~el~~~l~~l 106 (249)
.+..++|..+...+.-..+..-+..++..+
T Consensus 104 ~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~ 133 (697)
T PLN03081 104 REALELFEILEAGCPFTLPASTYDALVEAC 133 (697)
T ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Confidence 344455555543322234444444444433
No 266
>PF02761 Cbl_N2: CBL proto-oncogene N-terminus, EF hand-like domain; InterPro: IPR014741 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the EF hand-like domain.; GO: 0005509 calcium ion binding; PDB: 3OP0_A 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B ....
Probab=35.96 E-value=1.3e+02 Score=20.41 Aligned_cols=49 Identities=18% Similarity=-0.065 Sum_probs=30.0
Q ss_pred CcccHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCcccCHHHHHHHHH
Q 025714 92 GFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWS 141 (249)
Q Consensus 92 g~I~~~el~~~l~~lg~~~s~~~~~~l~~~~d~~~~~g~i~~~eF~~~~~ 141 (249)
-.|...+|...|...-...+..+...|-..+|. .+++.|+.=||-.+.+
T Consensus 21 ~IVPW~~F~~~L~~~h~~~~~~~~~aLk~TiDl-T~n~~iS~FeFdvFtR 69 (85)
T PF02761_consen 21 TIVPWSEFRQALQKVHPISSGLEAMALKSTIDL-TCNDYISNFEFDVFTR 69 (85)
T ss_dssp SEEEHHHHHHHHHHHS--SSHHHHHHHHHHH-T-TSSSEEEHHHHHHHHH
T ss_pred eEeeHHHHHHHHHHhcCCCchHHHHHHHHHHhc-ccCCccchhhhHHHHH
Confidence 557777777777754333333555666666777 7777777777655544
No 267
>PF02337 Gag_p10: Retroviral GAG p10 protein; InterPro: IPR003322 Retroviral matrix proteins (or major core proteins) are components of envelope-associated capsids, which line the inner surface of virus envelopes and are associated with viral membranes []. Matrix proteins are produced as part of Gag precursor polyproteins. During viral maturation, the Gag polyprotein is cleaved into major structural proteins by the viral protease, yielding the matrix (MA), capsid (CA), nucleocapsid (NC), and some smaller peptides. Gag-derived proteins govern the entire assembly and release of the virus particles, with matrix proteins playing key roles in Gag stability, capsid assembly, transport and budding. Although matrix proteins from different retroviruses appear to perform similar functions and can have similar structural folds, their primary sequences can be very different. This entry represents matrix proteins from beta-retroviruses such as Mason-Pfizer monkey virus (MPMV) (Simian Mason-Pfizer virus) and Mouse mammary tumor virus (MMTV) [, ]. This entry also identifies matrix proteins from several eukaryotic endogenous retroviruses, which arise when one or more copies of the retroviral genome becomes integrated into the host genome [].; GO: 0005198 structural molecule activity, 0019028 viral capsid; PDB: 2F77_X 2F76_X.
Probab=35.94 E-value=1.4e+02 Score=20.53 Aligned_cols=66 Identities=17% Similarity=0.165 Sum_probs=34.2
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCC--CCCcccchHHHHHHHHHHHHHHHHhhhcCCCCCceeeecH
Q 025714 163 LMELRDALYSIGYAVPPSVLQLLMDKYDNRSG--SRKLGLSFDSFVECGMVVKGLTEKFKEKDPRYTGSATLTY 234 (249)
Q Consensus 163 ~~el~~~l~~~g~~l~~~~~~~l~~~~d~~~~--~~~g~i~~~eF~~~l~~~~~~~~~f~~~d~~~~G~i~~~~ 234 (249)
...|+.+|+.-|+.++.+++...+...+.-.. ...|.|+.+.+...-.. +..+|+.. +.|.|.+..
T Consensus 11 v~~Lk~lLk~rGi~v~~~~L~~f~~~i~~~~PWF~~eG~l~~~~W~kvG~~---l~~~~~~~---~~~~Ip~~~ 78 (90)
T PF02337_consen 11 VSILKHLLKERGIRVKKKDLINFLSFIDKVCPWFPEEGTLDLDNWKKVGEE---LKRYYAEQ---GPEKIPIQA 78 (90)
T ss_dssp HHHHHHHHHCCT----HHHHHHHHHHHHHHTT-SS--SS-HHHHHHHHHHH---HHHHHHHC---STTTS-CHH
T ss_pred HHHHHHHHHHcCeeecHHHHHHHHHHHHHhCCCCCCCCCcCHHHHHHHHHH---HHHHHHHh---CCCCCChhH
Confidence 34566667777889999998888877653200 03577998888774333 33444433 345555533
No 268
>KOG4070 consensus Putative signal transduction protein p25 [General function prediction only; Signal transduction mechanisms]
Probab=35.87 E-value=80 Score=23.95 Aligned_cols=13 Identities=15% Similarity=0.337 Sum_probs=6.0
Q ss_pred CcccchHHHHHHH
Q 025714 197 KLGLSFDSFVECG 209 (249)
Q Consensus 197 ~g~i~~~eF~~~l 209 (249)
-+.++|++|...|
T Consensus 71 ~~~~tf~~fkkal 83 (180)
T KOG4070|consen 71 ARTITFEEFKKAL 83 (180)
T ss_pred cccccHHHHHHHH
Confidence 3445555554433
No 269
>PRK00810 nifW nitrogenase stabilizing/protective protein; Provisional
Probab=35.83 E-value=1.7e+02 Score=21.09 Aligned_cols=32 Identities=13% Similarity=0.168 Sum_probs=16.9
Q ss_pred hHHHHHHHHHHHHHHHHhhhcCCC-CCceeeec
Q 025714 202 FDSFVECGMVVKGLTEKFKEKDPR-YTGSATLT 233 (249)
Q Consensus 202 ~~eF~~~l~~~~~~~~~f~~~d~~-~~G~i~~~ 233 (249)
|++|+..--.-+.+.++|+..... ..+.|.++
T Consensus 74 Y~dF~~Stp~~ekvFKVfkd~~~~~~~~fV~l~ 106 (113)
T PRK00810 74 YADFVASSPLDQRVFKVLKDAVAPKKRAFVPLD 106 (113)
T ss_pred HHHHccCCHhHHHHHHHHHhcCccccCCeeeHH
Confidence 445544333345666777766542 24566553
No 270
>PRK08181 transposase; Validated
Probab=35.72 E-value=97 Score=25.92 Aligned_cols=75 Identities=11% Similarity=0.006 Sum_probs=45.9
Q ss_pred CCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCcccCHHHHHHHHHcH----------H-HH-------HHHHHH
Q 025714 91 SGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCL----------G-QW-------RAIFER 152 (249)
Q Consensus 91 ~g~I~~~el~~~l~~lg~~~s~~~~~~l~~~~d~~~~~g~i~~~eF~~~~~~~----------~-~~-------~~~F~~ 152 (249)
.+.|+.+.+...|+.|.+.--.+.+..+... ...+.++|.||+..+... + .+ ...|..
T Consensus 4 ~~~~~~~~l~~~l~~LkL~~~~~~~~~~~~~----a~~~~~~~~e~L~~ll~~E~~~R~~~~~~r~lk~A~~p~~~tle~ 79 (269)
T PRK08181 4 TNVIDEARLGLLLNELRLPTIKTLWPQFAEQ----ADKEGWPAARFLAAIAEHELAERARRRIERHLAEAHLPPGKTLDS 79 (269)
T ss_pred CCcccHHHHHHHHHHcCchHHHHHHHHHHHH----HhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHhh
Confidence 4678888899999988655323333443332 334679999999877431 1 11 134677
Q ss_pred HcCCCCCcccHHHHHHH
Q 025714 153 YDRDRSGKIDLMELRDA 169 (249)
Q Consensus 153 ~D~d~~G~I~~~el~~~ 169 (249)
||.+..-.++...+..+
T Consensus 80 fd~~~~~~~~~~~~~~L 96 (269)
T PRK08181 80 FDFEAVPMVSKAQVMAI 96 (269)
T ss_pred CCccCCCCCCHHHHHHH
Confidence 77766655666555543
No 271
>PRK01294 lipase chaperone; Provisional
Probab=35.56 E-value=3e+02 Score=23.94 Aligned_cols=14 Identities=43% Similarity=0.662 Sum_probs=8.1
Q ss_pred CcccHHHHHHHHHH
Q 025714 159 GKIDLMELRDALYS 172 (249)
Q Consensus 159 G~I~~~el~~~l~~ 172 (249)
+..+...++.++..
T Consensus 150 ~~~d~~~l~~~~~~ 163 (336)
T PRK01294 150 GKLDLQALQQLLDA 163 (336)
T ss_pred CccCHHHHHHHHHH
Confidence 55566666655553
No 272
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=35.52 E-value=69 Score=25.06 Aligned_cols=44 Identities=18% Similarity=0.243 Sum_probs=32.7
Q ss_pred cCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCcccCHH
Q 025714 87 DRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPK 134 (249)
Q Consensus 87 D~d~~g~I~~~el~~~l~~lg~~~s~~~~~~l~~~~d~~~~~g~i~~~ 134 (249)
..|.+|+++.++|...++.-+..++.+.+..+...-|+ ++..++
T Consensus 27 ~ld~~G~v~v~~Ll~~~~~~~~~~t~~~l~~vV~~d~K----~Rf~l~ 70 (179)
T PRK00819 27 TLDEEGWVDIDALIEALAKAYKWVTRELLEAVVESDDK----GRFEIS 70 (179)
T ss_pred ccCCCCCEEHHHHHHHHHHccCCCCHHHHHHHHHcCCC----cceEec
Confidence 34779999999999998765667888888888775444 444443
No 273
>PF08730 Rad33: Rad33; InterPro: IPR014841 Rad33 is involved in nucleotide excision repair (NER). NER is the main pathway for repairing DNA lesions induced by UV. Cells deleted for RAD33 display intermediate UV sensitivity that is epistatic with NER [].
Probab=35.24 E-value=2.1e+02 Score=22.12 Aligned_cols=151 Identities=13% Similarity=0.125 Sum_probs=79.6
Q ss_pred CCCCCCCCchHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCC--CCHHHHHHH---HHHhcCCCC--CcccCHHHHHHHH
Q 025714 68 HSAFPPGTHPDVIRSFEMVDRDRSGFIDENELQQALSSGYQR--FSLSTIRLL---MFLFRNPHD--SLRIGPKEFADLW 140 (249)
Q Consensus 68 ~~~l~~~~~~~l~~~F~~~D~d~~g~I~~~el~~~l~~lg~~--~s~~~~~~l---~~~~d~~~~--~g~i~~~eF~~~~ 140 (249)
+..++++-..++.++|..+-.+ ++-+..++|..++..|.++ ++.+..+.+ +..... +. -+..+..+...+-
T Consensus 5 f~ki~~EiEDEILe~Ya~~~~~-~~D~~l~~Lp~~f~~L~IP~cfT~DI~~cidyyY~~i~~-~~~~i~~tn~kq~it~~ 82 (170)
T PF08730_consen 5 FEKIPPEIEDEILEAYAEYTED-EQDMTLKDLPNYFEDLQIPKCFTKDINECIDYYYKFIRS-KDVCIEGTNPKQDITLQ 82 (170)
T ss_pred cccCChHHHHHHHHHHHHhcCC-ccceeHHHHHHHHHHcCCChHHHHhHHHHHHHHHHhccc-CceeecCcchhHHHHHH
Confidence 3467788889999999987754 6779999999999988543 222222222 222222 11 1112223322211
Q ss_pred HcHHHHHHHHHH--H---cCCCCCcccHHHHHHHHHHc-CCCCCHHHHHHHHHHhcCCCCCCCcccchHHHHHHHHHHHH
Q 025714 141 SCLGQWRAIFER--Y---DRDRSGKIDLMELRDALYSI-GYAVPPSVLQLLMDKYDNRSGSRKLGLSFDSFVECGMVVKG 214 (249)
Q Consensus 141 ~~~~~~~~~F~~--~---D~d~~G~I~~~el~~~l~~~-g~~l~~~~~~~l~~~~d~~~~~~~g~i~~~eF~~~l~~~~~ 214 (249)
+..+|-. . ..+-...|+.+.|.+.+..+ -+.-....+...++.+-...| .+....--+..+..+.++.
T Consensus 83 -----mi~a~t~s~~~~~~~di~DIVDfdKLl~~t~~LL~FmdN~~~Id~~W~L~V~~sg-r~~~~~~v~l~~h~LslkD 156 (170)
T PF08730_consen 83 -----MIHAYTISSSIKNPDDIIDIVDFDKLLRNTYRLLIFMDNEEHIDESWKLFVTASG-RDTQFPNVELKNHVLSLKD 156 (170)
T ss_pred -----HHHHhhccccccccccccceeeHHHHHHHHHHHHhccchHHHHHHHHHHHHHhcC-CCCCCcchhhhhceechHH
Confidence 1111111 1 11223566677776666554 344566778888887755421 2122221244455556666
Q ss_pred HHHHhhhcCCCC
Q 025714 215 LTEKFKEKDPRY 226 (249)
Q Consensus 215 ~~~~f~~~d~~~ 226 (249)
++++-...+.+.
T Consensus 157 Lqkik~~l~lD~ 168 (170)
T PF08730_consen 157 LQKIKNSLNLDQ 168 (170)
T ss_pred HHHHHHHhCCCC
Confidence 776666555544
No 274
>PLN02223 phosphoinositide phospholipase C
Probab=35.16 E-value=2.2e+02 Score=26.51 Aligned_cols=65 Identities=5% Similarity=-0.068 Sum_probs=45.2
Q ss_pred chHHHHHHHHhcCCCCCcccHHHHHHHH---Hhc-C-CCCCHHHHHHHHHHhcCCC--------CCcccCHHHHHHHHHc
Q 025714 76 HPDVIRSFEMVDRDRSGFIDENELQQAL---SSG-Y-QRFSLSTIRLLMFLFRNPH--------DSLRIGPKEFADLWSC 142 (249)
Q Consensus 76 ~~~l~~~F~~~D~d~~g~I~~~el~~~l---~~l-g-~~~s~~~~~~l~~~~d~~~--------~~g~i~~~eF~~~~~~ 142 (249)
-..++++|..+- ++.|.++.+.|.++| ... | ...+.++++.++..+-. . ..+.++++.|..++..
T Consensus 15 p~~v~~~f~~~~-~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~-~~~~~~~~~~~~~l~~~~f~~~L~s 92 (537)
T PLN02223 15 PDLILNFFGNEF-HGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKR-RKCDILAFRNLRCLELDHLNEFLFS 92 (537)
T ss_pred cHHHHHHHHHhh-cCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHh-hcccchhhhhccccCHHHHHHHhcC
Confidence 456888899884 667999999999999 322 1 34666677777765432 2 2366999999887743
No 275
>TIGR02933 nifM_nitrog nitrogen fixation protein NifM. Members of this protein family, found in a subset of nitrogen-fixing bacteria, are the nitrogen fixation protein NifM. NifM, homologous to peptidyl-prolyl cis-trans isomerases, appears to be an accessory protein for NifH, the Fe protein, also called component II or dinitrogenase reductase, of nitrogenase.
Probab=34.89 E-value=2.6e+02 Score=23.04 Aligned_cols=96 Identities=8% Similarity=-0.043 Sum_probs=55.2
Q ss_pred CCCCCCchHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCcccCHHHHHHHHHcHHHHHHH
Q 025714 70 AFPPGTHPDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCLGQWRAI 149 (249)
Q Consensus 70 ~l~~~~~~~l~~~F~~~D~d~~g~I~~~el~~~l~~lg~~~s~~~~~~l~~~~d~~~~~g~i~~~eF~~~~~~~~~~~~~ 149 (249)
.+++++...+..-+.. ..|...-+.......|+.+++.+++.....+...-....+++++|...+...-.+..+
T Consensus 18 ~~~~~~~~~~~~~~~~------~lI~e~l~lq~A~~~gi~v~~~ev~~~~e~~~~~L~~~G~~~~~~r~~ir~~i~~~~~ 91 (256)
T TIGR02933 18 ELSPDQLQQFDQAWQR------QRHIEQAVVRAADEIGVVIPPSLLEEAPQALAQALDEQALDAAERRAMLAHHLRLEAQ 91 (256)
T ss_pred CCCHHHHHHHHHHHHH------HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 3555665555444333 4455555667777889999999985443333210011236899998877654444444
Q ss_pred HHHHcCCCCCcccHHHHHHHHHH
Q 025714 150 FERYDRDRSGKIDLMELRDALYS 172 (249)
Q Consensus 150 F~~~D~d~~G~I~~~el~~~l~~ 172 (249)
+...-. ..=.|+.+|+...+..
T Consensus 92 ~~~~~~-~~i~ise~ei~~yy~~ 113 (256)
T TIGR02933 92 LACVCA-QAPQPDDADVEAWYRR 113 (256)
T ss_pred HHHHhc-CCCCCCHHHHHHHHHH
Confidence 444322 2235677777777653
No 276
>PF04558 tRNA_synt_1c_R1: Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1 ; InterPro: IPR007639 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This is a domain found N-terminal to the catalytic domain of glutaminyl-tRNA synthetase (6.1.1.18 from EC) in eukaryotes but not in Escherichia coli. This domain is thought to bind RNA in a non-specific manner, enhancing interactions between the tRNA and enzyme, but is not essential for enzyme function [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3TL4_X.
Probab=34.86 E-value=1.5e+02 Score=22.87 Aligned_cols=48 Identities=25% Similarity=0.344 Sum_probs=31.5
Q ss_pred HHHHHHHHHHcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhcCC
Q 025714 144 GQWRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYDNR 192 (249)
Q Consensus 144 ~~~~~~F~~~D~d~~G~I~~~el~~~l~~~g~~l~~~~~~~l~~~~d~~ 192 (249)
.++..+++.+-.++...|+..+|.+.+- .|..+|+++++..+..+-..
T Consensus 85 ~Ql~AA~~Yl~~~~~~~~d~~~Fe~~cG-VGV~VT~E~I~~~V~~~i~~ 132 (164)
T PF04558_consen 85 LQLDAALKYLKSNPSEPIDVAEFEKACG-VGVVVTPEQIEAAVEKYIEE 132 (164)
T ss_dssp HHHHHHHHHHHHHGG-G--HHHHHHTTT-TT----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHcC-CCeEECHHHHHHHHHHHHHH
Confidence 5778888888666666899999977653 67889999999988887654
No 277
>PF06648 DUF1160: Protein of unknown function (DUF1160); InterPro: IPR010594 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf75; it is a family of uncharacterised viral proteins.
Probab=34.60 E-value=1e+02 Score=22.53 Aligned_cols=44 Identities=18% Similarity=0.179 Sum_probs=25.0
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHhc-CCCCCHHHHHHHHHHhcC
Q 025714 78 DVIRSFEMVDRDRSGFIDENELQQALSSG-YQRFSLSTIRLLMFLFRN 124 (249)
Q Consensus 78 ~l~~~F~~~D~d~~g~I~~~el~~~l~~l-g~~~s~~~~~~l~~~~d~ 124 (249)
.|.++|++|-. +.|+.+.+..++.+. |..++...+.-++..+-.
T Consensus 38 Kl~~Il~mFl~---~eid~e~~y~l~~~~d~~~LT~~Qi~Yl~~~~~~ 82 (122)
T PF06648_consen 38 KLIKILKMFLN---DEIDVEDMYNLFGAVDGLKLTRSQIDYLYNRVYN 82 (122)
T ss_pred HHHHHHHHHHh---CCCCHHHHHHHHhcccHhhcCHHHHHHHHHHHHc
Confidence 45555555553 566666666666654 355666665555555433
No 278
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=33.83 E-value=63 Score=20.36 Aligned_cols=26 Identities=19% Similarity=0.267 Sum_probs=19.3
Q ss_pred cccHHHHHHHHHHcCCCCCHHHHHHH
Q 025714 160 KIDLMELRDALYSIGYAVPPSVLQLL 185 (249)
Q Consensus 160 ~I~~~el~~~l~~~g~~l~~~~~~~l 185 (249)
.|+.++|..+|+...-.++.+++++.
T Consensus 29 ~it~~DF~~Al~~~kpSVs~~dl~~y 54 (62)
T PF09336_consen 29 PITMEDFEEALKKVKPSVSQEDLKKY 54 (62)
T ss_dssp HBCHHHHHHHHHTCGGSS-HHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCCCHHHHHHH
Confidence 47888888888888777888777654
No 279
>PRK00034 gatC aspartyl/glutamyl-tRNA amidotransferase subunit C; Reviewed
Probab=33.67 E-value=80 Score=21.54 Aligned_cols=31 Identities=10% Similarity=0.090 Sum_probs=24.8
Q ss_pred cccHHHHHHHHHHcCCCCCHHHHHHHHHHhc
Q 025714 160 KIDLMELRDALYSIGYAVPPSVLQLLMDKYD 190 (249)
Q Consensus 160 ~I~~~el~~~l~~~g~~l~~~~~~~l~~~~d 190 (249)
.|+.++++.+.+-..+.+++++++.+...+.
T Consensus 2 ~i~~e~i~~la~La~l~l~~ee~~~~~~~l~ 32 (95)
T PRK00034 2 AITREEVKHLAKLARLELSEEELEKFAGQLN 32 (95)
T ss_pred CCCHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 4788899998888888899998877766553
No 280
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=33.56 E-value=3e+02 Score=23.40 Aligned_cols=157 Identities=7% Similarity=-0.027 Sum_probs=78.6
Q ss_pred HHHHhcCCCCCcccHHHHHH-HHH---hcCCCCCHHHHHHHHHHhcC-CCCCcccCHHHHHHHHHcHHHHHHHHHHHcCC
Q 025714 82 SFEMVDRDRSGFIDENELQQ-ALS---SGYQRFSLSTIRLLMFLFRN-PHDSLRIGPKEFADLWSCLGQWRAIFERYDRD 156 (249)
Q Consensus 82 ~F~~~D~d~~g~I~~~el~~-~l~---~lg~~~s~~~~~~l~~~~d~-~~~~g~i~~~eF~~~~~~~~~~~~~F~~~D~d 156 (249)
.|..+....-+..+...+.. .|. ++|+.++.+++..+++..-. ...++..++.+++.-=....++...|+..|.+
T Consensus 78 Fl~lLn~~~p~~y~~~~~~~DYf~lK~s~g~~Lt~~Dli~FL~~~i~~~~~~k~~~Y~~LVk~N~~Vv~aL~L~~~~~~~ 157 (292)
T PF13929_consen 78 FLKLLNIADPQNYSVRRFINDYFLLKKSMGCELTKEDLISFLKLVIINLSSNKSFNYWDLVKRNKIVVEALKLYDGLNPD 157 (292)
T ss_pred HHHHHhhcCcccCCHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhccccccchHHHHHHHhhHHHHHHHHHhhccCcc
Confidence 33444444455666665433 332 67889999888888887433 13344455555554433344555555555555
Q ss_pred CCCcccHHHHHHH-HHHcC--CCCCHHHHHHHHHHhcCCCCCCCcccchHHHHHHHHHH---HHHHHHhhhcCCCCCc-e
Q 025714 157 RSGKIDLMELRDA-LYSIG--YAVPPSVLQLLMDKYDNRSGSRKLGLSFDSFVECGMVV---KGLTEKFKEKDPRYTG-S 229 (249)
Q Consensus 157 ~~G~I~~~el~~~-l~~~g--~~l~~~~~~~l~~~~d~~~~~~~g~i~~~eF~~~l~~~---~~~~~~f~~~d~~~~G-~ 229 (249)
.-.|.-+|+... |+.|- ..-.-..+-+++..+-.. -.+.++-.-.+.++..+ +...+.|+.-+....+ .
T Consensus 158 -~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t---~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~ 233 (292)
T PF13929_consen 158 -ESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVST---FSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSV 233 (292)
T ss_pred -cceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhc---cccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCC
Confidence 345666666554 44442 112222233333333222 23445544444444443 5555666655554443 1
Q ss_pred eeecHHHHHHHHh
Q 025714 230 ATLTYESFMSIVI 242 (249)
Q Consensus 230 i~~~~~~~~~~~~ 242 (249)
-.-+..-|-.++.
T Consensus 234 ~~~D~rpW~~FI~ 246 (292)
T PF13929_consen 234 PGNDPRPWAEFIK 246 (292)
T ss_pred CCCCCchHHHHHH
Confidence 2345566665553
No 281
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=33.37 E-value=70 Score=25.14 Aligned_cols=38 Identities=18% Similarity=0.130 Sum_probs=24.2
Q ss_pred cCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhcC
Q 025714 87 DRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRN 124 (249)
Q Consensus 87 D~d~~g~I~~~el~~~l~~lg~~~s~~~~~~l~~~~d~ 124 (249)
..|.+|++..++|...+..-+..++.+++..++...++
T Consensus 26 ~~d~~G~v~v~dLL~~~~~~~~~~t~~~i~~vV~~~~K 63 (186)
T PF01885_consen 26 VMDPDGWVSVDDLLRALRFKGLWVTEEDIREVVETDDK 63 (186)
T ss_dssp ---TT--EEHHHHHHHHHHT-TT--HHHHHHHHHH-SS
T ss_pred ccCCCCCEeHHHHHHHHHHcCCCCCHHHHHHHHhhCCC
Confidence 35778999999999998876777888888888877554
No 282
>cd05831 Ribosomal_P1 Ribosomal protein P1. This subfamily represents the eukaryotic large ribosomal protein P1. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P1 is located in the L12 stalk, with proteins P2, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers) and bacteria may have four or six copies (two or three homodimers), depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2A, and
Probab=33.03 E-value=1.6e+02 Score=20.67 Aligned_cols=35 Identities=17% Similarity=0.171 Sum_probs=28.9
Q ss_pred CCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhcC
Q 025714 157 RSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYDN 191 (249)
Q Consensus 157 ~~G~I~~~el~~~l~~~g~~l~~~~~~~l~~~~d~ 191 (249)
..-.|+.+.+..+|...|..+....+..+++.+..
T Consensus 14 ~~~~~Tae~I~~ilkAaGveve~~~~~~f~~~L~g 48 (103)
T cd05831 14 DGIEITADNINALLKAAGVNVEPYWPGLFAKALEG 48 (103)
T ss_pred CCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHHcC
Confidence 34589999999999999998888888877777744
No 283
>TIGR00624 tag DNA-3-methyladenine glycosylase I. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=32.92 E-value=1.1e+02 Score=23.93 Aligned_cols=45 Identities=11% Similarity=0.097 Sum_probs=32.5
Q ss_pred chHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHH
Q 025714 76 HPDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMF 120 (249)
Q Consensus 76 ~~~l~~~F~~~D~d~~g~I~~~el~~~l~~lg~~~s~~~~~~l~~ 120 (249)
.+.++++|..||.+.--..+.+++..++..-++--....++.++.
T Consensus 52 r~~fr~aF~~Fd~~~VA~~~e~~ie~L~~d~~IIRnr~KI~Avi~ 96 (179)
T TIGR00624 52 RENYRRAFSGFDIVKVARMTDADVERLLQDDGIIRNRGKIEATIA 96 (179)
T ss_pred HHHHHHHHcCCCHHHHhCCCHHHHHHHhcCccchhhHHHHHHHHH
Confidence 457888999999887778888888888886665555544544443
No 284
>PRK15319 AIDA autotransporter-like protein ShdA; Provisional
Probab=32.83 E-value=63 Score=34.44 Aligned_cols=6 Identities=33% Similarity=0.711 Sum_probs=2.5
Q ss_pred HhcCCC
Q 025714 85 MVDRDR 90 (249)
Q Consensus 85 ~~D~d~ 90 (249)
++|+.+
T Consensus 1749 LHDR~G 1754 (2039)
T PRK15319 1749 LYDREG 1754 (2039)
T ss_pred HHHcCC
Confidence 344443
No 285
>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton]
Probab=32.77 E-value=1.3e+02 Score=26.87 Aligned_cols=6 Identities=0% Similarity=0.340 Sum_probs=2.5
Q ss_pred ecHHHH
Q 025714 232 LTYESF 237 (249)
Q Consensus 232 ~~~~~~ 237 (249)
+++++|
T Consensus 511 fDe~dW 516 (518)
T KOG1830|consen 511 FDEDDW 516 (518)
T ss_pred cccccc
Confidence 344444
No 286
>PRK10371 DNA-binding transcriptional regulator MelR; Provisional
Probab=32.68 E-value=3e+02 Score=23.17 Aligned_cols=53 Identities=6% Similarity=0.110 Sum_probs=33.4
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCcccCHHHHHHHHHc
Q 025714 79 VIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSC 142 (249)
Q Consensus 79 l~~~F~~~D~d~~g~I~~~el~~~l~~lg~~~s~~~~~~l~~~~d~~~~~g~i~~~eF~~~~~~ 142 (249)
++++...+..+-...++..++...+ .++...+.++|+..- .+++.+|+..++.
T Consensus 193 i~~~~~~i~~~~~~~~tl~~lA~~~-----~~S~~~l~r~Fk~~~------G~t~~~~l~~~Rl 245 (302)
T PRK10371 193 VSQMLGFIAENYDQALTINDVAEHV-----KLNANYAMGIFQRVM------QLTMKQYITAMRI 245 (302)
T ss_pred HHHHHHHHHHhhcCCCCHHHHHHHH-----CcCHHHHHHHHHHHh------CCCHHHHHHHHHH
Confidence 4555554444444556666666655 577778888887532 3678888777654
No 287
>PF10437 Lip_prot_lig_C: Bacterial lipoate protein ligase C-terminus; InterPro: IPR019491 This is the C-terminal domain of a bacterial lipoate protein ligase. There is no conservation between this C terminus and that of vertebrate lipoate protein ligase C-termini, but both are associated with IPR004143 from INTERPRO, further upstream. This C-terminal domain is more stable than IPR004143 from INTERPRO and the hypothesis is that the C-terminal domain has a role in recognising the lipoyl domain and/or transferring the lipoyl group onto it from the lipoyl-AMP intermediate. C-terminal fragments of length 172 to 193 amino acid residues are observed in the eubacterial enzymes whereas in their archaeal counterparts the C-terminal segment is significantly smaller, ranging in size from 87 to 107 amino acid residues. ; PDB: 1X2G_A 3A7R_A 3A7A_A 1X2H_C 1VQZ_A 3R07_C.
Probab=32.59 E-value=1.2e+02 Score=20.12 Aligned_cols=45 Identities=22% Similarity=0.272 Sum_probs=32.6
Q ss_pred ccHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCCCCCcccchHHHHHHH
Q 025714 161 IDLMELRDALYSIGYAVPPSVLQLLMDKYDNRSGSRKLGLSFDSFVECG 209 (249)
Q Consensus 161 I~~~el~~~l~~~g~~l~~~~~~~l~~~~d~~~~~~~g~i~~~eF~~~l 209 (249)
-..++|.++| .|...+.+.+.+.+...+.+. --+.++-+||++++
T Consensus 42 ~~i~~le~~L--~G~~~~~~~i~~~l~~~~~~~--~~~~~~~~el~~~l 86 (86)
T PF10437_consen 42 EDIEELEEAL--IGCPYDREAIKEALNSVDLED--YFGNISVEELIELL 86 (86)
T ss_dssp CCHHHHHHHH--TTCBSSHHHHHHHHHHCHGGG--TCCTHHHHHHHHHH
T ss_pred hHHHHHHHHH--HhcCCCHHHHHHHHHHhCHhh--ccccCCHHHHHHhC
Confidence 3467777777 466688999999999886542 34578888888764
No 288
>cd08327 CARD_RAIDD Caspase activation and recruitment domain of RIP-associated ICH-1 homologous protein with a death domain. Caspase activation and recruitment domain (CARD) of RAIDD (RIP-associated ICH-1 homologous protein with a death domain), also known as CRADD (Caspase and RIP adaptor). RAIDD is an adaptor protein that together with the p53-inducible protein PIDD and caspase-2, forms the PIDDosome complex, which is required for caspase-2 activation and plays a role in mediating stress-induced apoptosis. RAIDD contains an N-terminal CARD, which interacts with the caspase-2 CARD, and a C-terminal Death domain (DD), which interacts with the DD of PIDD. In general, CARDs are DDs associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodime
Probab=32.58 E-value=1.7e+02 Score=20.21 Aligned_cols=58 Identities=12% Similarity=0.094 Sum_probs=38.1
Q ss_pred CCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCCCCCcccchHHHHHHHHHHHHHHHHhhhcC
Q 025714 158 SGKIDLMELRDALYSIGYAVPPSVLQLLMDKYDNRSGSRKLGLSFDSFVECGMVVKGLTEKFKEKD 223 (249)
Q Consensus 158 ~G~I~~~el~~~l~~~g~~l~~~~~~~l~~~~d~~~~~~~g~i~~~eF~~~l~~~~~~~~~f~~~d 223 (249)
.|.|+.++...+-. ..-+.+..+.++.....- |.--|..|+++|...+.+.+.+...+
T Consensus 33 ~gIlT~~~~e~I~a---~~T~~~k~~~LLdiLp~R-----G~~AF~~F~~aL~e~~~l~~~l~~~~ 90 (94)
T cd08327 33 EGILTESHVEEIES---QTTSRRKTMKLLDILPSR-----GPKAFHAFLDSLEEFPWVRDKLLKLR 90 (94)
T ss_pred CCCCCHHHHHHHHc---cCChHHHHHHHHHHHHhh-----ChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888887766653 335566677777776554 66778888888876655555544433
No 289
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=32.44 E-value=96 Score=20.94 Aligned_cols=20 Identities=15% Similarity=0.185 Sum_probs=13.0
Q ss_pred HHHHHHhhhcCCCCCceeee
Q 025714 213 KGLTEKFKEKDPRYTGSATL 232 (249)
Q Consensus 213 ~~~~~~f~~~d~~~~G~i~~ 232 (249)
..+.++|+.+-.+++..+++
T Consensus 59 ~EL~EA~rl~~~n~~~~l~i 78 (83)
T cd06404 59 MELEEAFRLYELNKDSELNI 78 (83)
T ss_pred HHHHHHHHHHHhcCcccEEE
Confidence 45666777777777665554
No 290
>PF12355 Dscam_C: Down syndrome cell adhesion molecule C terminal ; InterPro: IPR021012 This entry is specific to the insecta, predominantly Drosophila spp. This entry is found in association with PF00047 from PFAM, PF07679 from PFAM and PF00041 from PFAM. The Down syndrome cell adhesion molecule (Dscam) belongs to a family of cell membrane molecules involved in the differentiation of the nervous system. This is the C-terminal cytoplasmic tail region of Dscam. In Drosophila melanogaster (Fruit fly) the gene has at least 59 different transcripts. Dscam may play a role in the nervous and immune systems [].
Probab=32.22 E-value=93 Score=22.07 Aligned_cols=8 Identities=25% Similarity=0.393 Sum_probs=4.9
Q ss_pred CCCCCCCC
Q 025714 5 SGSYSSSQ 12 (249)
Q Consensus 5 ~~~~~~~~ 12 (249)
+.+|||++
T Consensus 23 ~~qY~sqy 30 (124)
T PF12355_consen 23 EDQYGSQY 30 (124)
T ss_pred cccccccc
Confidence 35677764
No 291
>COG4807 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.07 E-value=2.1e+02 Score=21.16 Aligned_cols=40 Identities=20% Similarity=0.219 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhcC
Q 025714 143 LGQWRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYDN 191 (249)
Q Consensus 143 ~~~~~~~F~~~D~d~~G~I~~~el~~~l~~~g~~l~~~~~~~l~~~~d~ 191 (249)
+++++-+|..-+. ++..++...++.++..|+..+|+.=+.
T Consensus 90 LkKLRiAf~lK~~---------Dm~~I~~~~~f~vS~pElsAlfR~~~h 129 (155)
T COG4807 90 LKKLRIAFSLKTD---------DMLAILTEQQFRVSMPELSALFRAPDH 129 (155)
T ss_pred HHhHhHhhhcccc---------hHHHHHhccCcccccHHHHHHHhCCCc
Confidence 3577778876643 477888888999999999999976554
No 292
>PF12825 DUF3818: Domain of unknown function in PX-proteins (DUF3818); InterPro: IPR024554 The function of this domain is not known, but it is almost always found C-terminal to a PX-domain (IPR001683 from INTERPRO).
Probab=31.65 E-value=3.5e+02 Score=23.58 Aligned_cols=49 Identities=10% Similarity=0.028 Sum_probs=31.9
Q ss_pred CCcccchHHHHHHHHHHHH-HHHHhhhcCCCCCceeeecHHHHHHHHhhcc
Q 025714 196 RKLGLSFDSFVECGMVVKG-LTEKFKEKDPRYTGSATLTYESFMSIVIPFI 245 (249)
Q Consensus 196 ~~g~i~~~eF~~~l~~~~~-~~~~f~~~d~~~~G~i~~~~~~~~~~~~~~~ 245 (249)
.+..-+.++|++.+.+.+. +-+..+..-.+++| |.-.+-+|+.-++.++
T Consensus 288 ~~~~~~V~~~v~Ll~rH~~~~y~FvH~v~~~d~~-lf~~l~~W~~~~l~~l 337 (341)
T PF12825_consen 288 SDPFPSVEDFVDLLDRHEQSFYKFVHEVHKNDPE-LFDELIAWIEKILKFL 337 (341)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHcChH-HHHHHHHHHHHHHHHH
Confidence 3456678899988888754 33444555556666 6667777777666553
No 293
>PRK03968 DNA primase large subunit; Validated
Probab=31.51 E-value=2.5e+02 Score=24.72 Aligned_cols=75 Identities=17% Similarity=0.180 Sum_probs=45.3
Q ss_pred cCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCCCCCcccchHHHHHHHHHHHHHHHHhhhcCCCCCceeeec
Q 025714 154 DRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYDNRSGSRKLGLSFDSFVECGMVVKGLTEKFKEKDPRYTGSATLT 233 (249)
Q Consensus 154 D~d~~G~I~~~el~~~l~~~g~~l~~~~~~~l~~~~d~~~~~~~g~i~~~eF~~~l~~~~~~~~~f~~~d~~~~G~i~~~ 233 (249)
...+.+-|...+++.+-+.++..+..++++.+.-.+ .|.+.+|+...-. +.|... -=++|+|-++
T Consensus 115 ~~~~~~e~p~~d~~~l~~~~~~el~~e~~~~~~~~y---------~i~~~df~~l~gs-~sLt~~-----iL~nG~VYLd 179 (399)
T PRK03968 115 KVVNAIEIPEKDRKILERVRGRELPPEELEDLLPEY---------KIKWKDLLDLIGS-GSLTDL-----YIRNGRVYLR 179 (399)
T ss_pred cccccccccchhhhhhhhhcccccCHHHHHHHhhhc---------cccHHHHHHhcCC-cchhhh-----hhcCcEEEec
Confidence 345567777788887888888888888888776443 3556666662211 111111 1245777777
Q ss_pred HHHHHHHHhh
Q 025714 234 YESFMSIVIP 243 (249)
Q Consensus 234 ~~~~~~~~~~ 243 (249)
.++|+.....
T Consensus 180 kee~iki~~e 189 (399)
T PRK03968 180 REEFLKLWSK 189 (399)
T ss_pred HHHHHHHHHH
Confidence 7777665543
No 294
>PF06207 DUF1002: Protein of unknown function (DUF1002); InterPro: IPR009343 This protein family has no known function. Its members are about 300 amino acids in length. It has so far been detected in Firmicute bacteria and some archaebacteria.
Probab=31.32 E-value=67 Score=26.15 Aligned_cols=47 Identities=11% Similarity=0.136 Sum_probs=34.8
Q ss_pred cHHHHHHHHH----HcCCCCCHHHHHHHHHHhcCCCCCCCcccchHHHHHHHHH
Q 025714 162 DLMELRDALY----SIGYAVPPSVLQLLMDKYDNRSGSRKLGLSFDSFVECGMV 211 (249)
Q Consensus 162 ~~~el~~~l~----~~g~~l~~~~~~~l~~~~d~~~~~~~g~i~~~eF~~~l~~ 211 (249)
+.++++.+.. .+++.+++++++.+...+..= .+-.+++.+|.+.|..
T Consensus 173 t~~eI~~IV~~~~~~~~i~ls~~q~~~i~~l~~~~---~~~~~~~~~~k~ql~~ 223 (225)
T PF06207_consen 173 TDEEIRNIVNNVLNNYNINLSDEQIQQIVNLMKKI---QNLNIDWKQVKEQLNN 223 (225)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH---HcCCCCHHHHHHHHHh
Confidence 7778777665 468889999988888877664 5566788888776543
No 295
>PF06648 DUF1160: Protein of unknown function (DUF1160); InterPro: IPR010594 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf75; it is a family of uncharacterised viral proteins.
Probab=31.29 E-value=1.3e+02 Score=22.03 Aligned_cols=47 Identities=17% Similarity=0.329 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHcCCCCCcccHHHHHHHHHHc-CCCCCHHHHHHHHHHhcCC
Q 025714 143 LGQWRAIFERYDRDRSGKIDLMELRDALYSI-GYAVPPSVLQLLMDKYDNR 192 (249)
Q Consensus 143 ~~~~~~~F~~~D~d~~G~I~~~el~~~l~~~-g~~l~~~~~~~l~~~~d~~ 192 (249)
..++..+|++|-. +.|+.+.+-.++.+. |..||...++-++.++-.+
T Consensus 36 ~~Kl~~Il~mFl~---~eid~e~~y~l~~~~d~~~LT~~Qi~Yl~~~~~~n 83 (122)
T PF06648_consen 36 LDKLIKILKMFLN---DEIDVEDMYNLFGAVDGLKLTRSQIDYLYNRVYNN 83 (122)
T ss_pred HHHHHHHHHHHHh---CCCCHHHHHHHHhcccHhhcCHHHHHHHHHHHHcc
Confidence 3577788888864 678888888888876 5788888888877776554
No 296
>PRK08181 transposase; Validated
Probab=31.19 E-value=1.5e+02 Score=24.83 Aligned_cols=49 Identities=14% Similarity=0.092 Sum_probs=34.5
Q ss_pred CCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCCCCCcccchHHHHHHHHHH
Q 025714 158 SGKIDLMELRDALYSIGYAVPPSVLQLLMDKYDNRSGSRKLGLSFDSFVECGMVV 212 (249)
Q Consensus 158 ~G~I~~~el~~~l~~~g~~l~~~~~~~l~~~~d~~~~~~~g~i~~~eF~~~l~~~ 212 (249)
...|+.+++...|+.++..--.+.++++.... ..+.++|+||+..|...
T Consensus 4 ~~~~~~~~l~~~l~~LkL~~~~~~~~~~~~~a------~~~~~~~~e~L~~ll~~ 52 (269)
T PRK08181 4 TNVIDEARLGLLLNELRLPTIKTLWPQFAEQA------DKEGWPAARFLAAIAEH 52 (269)
T ss_pred CCcccHHHHHHHHHHcCchHHHHHHHHHHHHH------hhcCCCHHHHHHHHHHH
Confidence 35788888999999988664445555555443 33568999999988753
No 297
>PF12419 DUF3670: SNF2 Helicase protein ; InterPro: IPR022138 This domain family is found in bacteria, archaea and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF00271 from PFAM, PF00176 from PFAM. Most of the proteins in this family are annotated as SNF2 helicases but there is little accompanying literature to confirm this.
Probab=31.10 E-value=1.1e+02 Score=22.68 Aligned_cols=49 Identities=10% Similarity=0.099 Sum_probs=35.2
Q ss_pred CCCcccHHHHHHHHHhcC---------CCCCHHHHHHHHHHhcCCCCCc-ccCHHHHHHH
Q 025714 90 RSGFIDENELQQALSSGY---------QRFSLSTIRLLMFLFRNPHDSL-RIGPKEFADL 139 (249)
Q Consensus 90 ~~g~I~~~el~~~l~~lg---------~~~s~~~~~~l~~~~d~~~~~g-~i~~~eF~~~ 139 (249)
++..|+.+||.+++..-. ..+..++++.+.+.+.. ...+ .++..|-+.+
T Consensus 80 Gd~~Ls~eEf~~L~~~~~~LV~~rg~WV~ld~~~l~~~~~~~~~-~~~~~~lt~~e~Lr~ 138 (141)
T PF12419_consen 80 GDEELSEEEFEQLVEQKRPLVRFRGRWVELDPEELRRALAFLEK-APKGEKLTLAEALRA 138 (141)
T ss_pred CCEECCHHHHHHHHHcCCCeEEECCEEEEECHHHHHHHHHHHHh-ccccCCCCHHHHHHH
Confidence 677899999998887432 25677888888888776 5544 3777776654
No 298
>smart00513 SAP Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation.
Probab=31.04 E-value=68 Score=17.35 Aligned_cols=18 Identities=33% Similarity=0.541 Sum_probs=13.8
Q ss_pred cccHHHHHHHHHHcCCCC
Q 025714 160 KIDLMELRDALYSIGYAV 177 (249)
Q Consensus 160 ~I~~~el~~~l~~~g~~l 177 (249)
.++..+|++.|+..|...
T Consensus 3 ~l~~~~Lk~~l~~~gl~~ 20 (35)
T smart00513 3 KLKVSELKDELKKRGLST 20 (35)
T ss_pred cCcHHHHHHHHHHcCCCC
Confidence 567888888888887653
No 299
>TIGR01209 RNA ligase, Pab1020 family. Members of this family are found, so far, in a single copy per genome and largely in thermophiles, of which only Aquifex aeolicus is bacterial rather than archaeal. PSI-BLAST converges after a single iteration to the whole of this family and reveals no convincing similarity to any other protein. The member protein Pab1020 has been characterized as an RNA ligase with circularization activity.
Probab=31.03 E-value=1.6e+02 Score=25.95 Aligned_cols=43 Identities=7% Similarity=-0.001 Sum_probs=28.8
Q ss_pred HHHHhcCCCCCcccHHHHHHHHHhcCCCC-------CHH----HHHHHHHHhcC
Q 025714 82 SFEMVDRDRSGFIDENELQQALSSGYQRF-------SLS----TIRLLMFLFRN 124 (249)
Q Consensus 82 ~F~~~D~d~~g~I~~~el~~~l~~lg~~~-------s~~----~~~~l~~~~d~ 124 (249)
+|..+|.+....++.++...++..+|+.. +.+ ++..++..++.
T Consensus 162 vFDI~d~~t~~~L~~~er~~l~e~yglp~Vpvlg~~~~~~~~~~~~eii~~L~~ 215 (374)
T TIGR01209 162 LFDIREGKTNRSLPVEERLELAEKYGLPHVEILGVYTADEAVEEIYEIIERLNK 215 (374)
T ss_pred EEEEEECCCCccCCHHHHHHHHHHCCCCccceeeEEcHHHHHHHHHHHHHHhhh
Confidence 35555556688999999999999887643 333 34455555655
No 300
>PF03979 Sigma70_r1_1: Sigma-70 factor, region 1.1; InterPro: IPR007127 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This entry represents Region 1.1 which modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase [, ]. Region 1.1 is also involved in promoter binding.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2K6X_A.
Probab=30.94 E-value=61 Score=21.59 Aligned_cols=33 Identities=21% Similarity=0.371 Sum_probs=21.0
Q ss_pred CCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhcCC
Q 025714 158 SGKIDLMELRDALYSIGYAVPPSVLQLLMDKYDNR 192 (249)
Q Consensus 158 ~G~I~~~el~~~l~~~g~~l~~~~~~~l~~~~d~~ 192 (249)
.|+|+.+++..+|.... ++.+.++.++..+...
T Consensus 19 ~G~lT~~eI~~~L~~~~--~~~e~id~i~~~L~~~ 51 (82)
T PF03979_consen 19 KGYLTYDEINDALPEDD--LDPEQIDEIYDTLEDE 51 (82)
T ss_dssp HSS-BHHHHHHH-S-S-----HHHHHHHHHHHHTT
T ss_pred cCcCCHHHHHHHcCccC--CCHHHHHHHHHHHHHC
Confidence 57888888888886433 7788888888887654
No 301
>PRK00523 hypothetical protein; Provisional
Probab=30.65 E-value=1.1e+02 Score=20.01 Aligned_cols=33 Identities=21% Similarity=0.106 Sum_probs=29.1
Q ss_pred CCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhc
Q 025714 91 SGFIDENELQQALSSGYQRFSLSTIRLLMFLFR 123 (249)
Q Consensus 91 ~g~I~~~el~~~l~~lg~~~s~~~~~~l~~~~d 123 (249)
+--|+.+-++..+.+.|..+|+..++.+.+...
T Consensus 37 NPpine~mir~M~~QMGqKPSekki~Q~m~~mk 69 (72)
T PRK00523 37 NPPITENMIRAMYMQMGRKPSESQIKQVMRSVK 69 (72)
T ss_pred CcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHH
Confidence 567999999999999999999999999987653
No 302
>PF06627 DUF1153: Protein of unknown function (DUF1153); InterPro: IPR009534 This family consists of several short, hypothetical bacterial proteins of unknown function.; PDB: 2OA4_A 2JRT_A.
Probab=30.55 E-value=93 Score=21.26 Aligned_cols=30 Identities=17% Similarity=0.199 Sum_probs=22.3
Q ss_pred CCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhcCC
Q 025714 158 SGKIDLMELRDALYSIGYAVPPSVLQLLMDKYDNR 192 (249)
Q Consensus 158 ~G~I~~~el~~~l~~~g~~l~~~~~~~l~~~~d~~ 192 (249)
.|.|+.+|- ++..+ |+.+|++.+...++..
T Consensus 47 ~Glis~~EA---~~rY~--Ls~eEf~~W~~av~rh 76 (90)
T PF06627_consen 47 GGLISVEEA---CRRYG--LSEEEFESWQRAVDRH 76 (90)
T ss_dssp CTTS-HHHH---HHCTT--SSHHHHHHHHHHCCT-
T ss_pred cCCCCHHHH---HHHhC--CCHHHHHHHHHHHHHH
Confidence 488887775 55554 9999999999998876
No 303
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=30.39 E-value=1.2e+02 Score=18.00 Aligned_cols=29 Identities=7% Similarity=0.039 Sum_probs=24.4
Q ss_pred CCcccHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 025714 158 SGKIDLMELRDALYSIGYAVPPSVLQLLMDK 188 (249)
Q Consensus 158 ~G~I~~~el~~~l~~~g~~l~~~~~~~l~~~ 188 (249)
+..++.++...+...+| ++...|..+|..
T Consensus 22 ~~~p~~~~~~~la~~l~--l~~~~V~~WF~n 50 (57)
T PF00046_consen 22 NPYPSKEEREELAKELG--LTERQVKNWFQN 50 (57)
T ss_dssp SSSCHHHHHHHHHHHHT--SSHHHHHHHHHH
T ss_pred hcccccccccccccccc--ccccccccCHHH
Confidence 57899999999888887 888888888864
No 304
>PF12995 DUF3879: Domain of unknown function, E. rectale Gene description (DUF3879); InterPro: IPR024540 This entry represents proteins of unknown function found primarily in Firmicutes. The Eubacterium rectale gene appears to be upregulated in the presence of Bacteroides thetaiotaomicron compared to growth in pure culture [].
Probab=30.34 E-value=2.1e+02 Score=22.04 Aligned_cols=56 Identities=9% Similarity=0.159 Sum_probs=37.8
Q ss_pred ccHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCCCCCcccchHHHHHHHHHHHHHHHHhhhcCCCCC
Q 025714 161 IDLMELRDALYSIGYAVPPSVLQLLMDKYDNRSGSRKLGLSFDSFVECGMVVKGLTEKFKEKDPRYT 227 (249)
Q Consensus 161 I~~~el~~~l~~~g~~l~~~~~~~l~~~~d~~~~~~~g~i~~~eF~~~l~~~~~~~~~f~~~d~~~~ 227 (249)
|...+.+.-|++.|+.........++..+-.. +.|.+ |+.|-. +....+.||.+++
T Consensus 2 ~ns~~~~~~lka~gi~tnskqyka~~~~mm~~---~~~~~-y~~~~~-------iknlm~~yd~dgd 57 (186)
T PF12995_consen 2 INSSSVQEQLKAAGINTNSKQYKAVMSEMMSA---GEGAM-YTNIQG-------IKNLMSQYDKDGD 57 (186)
T ss_pred CChHHHHHHHHhcCCCcChHHHHHHHHHHhcC---CCCce-eehHHH-------HHHHHHhcCCCCc
Confidence 45667788888899988888888888888775 44443 444432 4555566665543
No 305
>PRK10353 3-methyl-adenine DNA glycosylase I; Provisional
Probab=29.95 E-value=72 Score=25.19 Aligned_cols=44 Identities=9% Similarity=0.147 Sum_probs=29.6
Q ss_pred chHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHH
Q 025714 76 HPDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLM 119 (249)
Q Consensus 76 ~~~l~~~F~~~D~d~~g~I~~~el~~~l~~lg~~~s~~~~~~l~ 119 (249)
.+.++++|..||.+.--.++.+++..++..-++--....++.++
T Consensus 53 re~fr~aF~~Fd~~~VA~~~e~die~Ll~d~~IIRnr~KI~Avi 96 (187)
T PRK10353 53 RENYRACFHQFDPVKVAAMQEEDVERLVQDAGIIRHRGKIQAII 96 (187)
T ss_pred HHHHHHHHcCCCHHHHhCCCHHHHHHHhcCchhHHhHHHHHHHH
Confidence 45778888888887767778888888887655444444444333
No 306
>PF07957 DUF3294: Protein of unknown function (DUF3294); InterPro: IPR012917 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This is a family of mitochondrial ribosomal proteins, which appears to be fungal specific [].
Probab=29.90 E-value=2.7e+02 Score=22.46 Aligned_cols=31 Identities=13% Similarity=0.160 Sum_probs=19.6
Q ss_pred cHHHHHHHHHHc----CC-CCCHHHHHHHHHHhcCC
Q 025714 162 DLMELRDALYSI----GY-AVPPSVLQLLMDKYDNR 192 (249)
Q Consensus 162 ~~~el~~~l~~~----g~-~l~~~~~~~l~~~~d~~ 192 (249)
..++|.+.|+.- .+ ..+++++++.++.+..+
T Consensus 157 e~e~~~~~Le~~~e~~~i~~~~d~~i~~~~k~~s~~ 192 (216)
T PF07957_consen 157 EQEEFEEFLEGKVEDFHINEESDEEIEKELKKYSKE 192 (216)
T ss_pred cHHHHHHHHhccccccccCCCChHHHHHHHHhcCHH
Confidence 467777777641 11 24677777777777664
No 307
>KOG4004 consensus Matricellular protein Osteonectin/SPARC/BM-40 [Extracellular structures]
Probab=29.56 E-value=21 Score=28.37 Aligned_cols=51 Identities=20% Similarity=0.056 Sum_probs=37.4
Q ss_pred HHhcCCCCCcccCHHHHHHHHHc----HHHHHHHHHHHcCCCCCcccHHHHHHHH
Q 025714 120 FLFRNPHDSLRIGPKEFADLWSC----LGQWRAIFERYDRDRSGKIDLMELRDAL 170 (249)
Q Consensus 120 ~~~d~~~~~g~i~~~eF~~~~~~----~~~~~~~F~~~D~d~~G~I~~~el~~~l 170 (249)
-.+|.---+|.++-.|..-+-+- .--....|+..|.|+||.|+.+|....+
T Consensus 194 ~qld~~p~d~~~sh~el~pl~ap~ipme~c~~~f~e~cd~~nd~~ial~ew~~c~ 248 (259)
T KOG4004|consen 194 GQLDQHPIDGYLSHTELAPLRAPLIPMEHCTTRFFETCDLDNDKYIALDEWAGCF 248 (259)
T ss_pred ccccCCCccccccccccccccCCcccHHhhchhhhhcccCCCCCceeHHHhhccc
Confidence 34454234899999998776543 2346778999999999999999986654
No 308
>PRK13654 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=29.50 E-value=57 Score=28.15 Aligned_cols=82 Identities=17% Similarity=0.145 Sum_probs=40.9
Q ss_pred cCCCCCHHHHHHHHHHhcC-CCCCcccCHHHHHHHHHcH-HHHHHHHHHH-----cCCCCCcccHHHHHHHHHHcCCCCC
Q 025714 106 GYQRFSLSTIRLLMFLFRN-PHDSLRIGPKEFADLWSCL-GQWRAIFERY-----DRDRSGKIDLMELRDALYSIGYAVP 178 (249)
Q Consensus 106 lg~~~s~~~~~~l~~~~d~-~~~~g~i~~~eF~~~~~~~-~~~~~~F~~~-----D~d~~G~I~~~el~~~l~~~g~~l~ 178 (249)
+......++++.++..+.. .+..-.+-=+||...+..+ .+.+.+|..| ..+=+|.|=-.|+.+-++. .
T Consensus 38 ~d~s~~~~e~~A~l~E~r~DyNr~HF~R~~ef~~~~d~l~~e~r~~FidFLerSctaEFSGflLYKEl~rrlk~-----~ 112 (355)
T PRK13654 38 LDLSPNREELDAILEEMRADYNRHHFVRDEEFDQDWDHLDPETRKEFIDFLERSCTAEFSGFLLYKELSRRLKD-----R 112 (355)
T ss_pred cCCchhHHHHHHHHHHHHhCcccccccCChhhhhchhhCCHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhccc-----c
Confidence 4555666777777776533 0334444455555544332 3444444433 3344555555554443321 1
Q ss_pred HHHHHHHHHHhcCC
Q 025714 179 PSVLQLLMDKYDNR 192 (249)
Q Consensus 179 ~~~~~~l~~~~d~~ 192 (249)
..++.++|..+..|
T Consensus 113 nP~lae~F~lMaRD 126 (355)
T PRK13654 113 NPLLAELFQLMARD 126 (355)
T ss_pred CcHHHHHHHHHhhh
Confidence 34566666665554
No 309
>PF03206 NifW: Nitrogen fixation protein NifW; InterPro: IPR004893 Nitrogenase is a complex metalloenzyme composed of two proteins designated the Fe-protein and the MoFe-protein. Apart from these two proteins, a number of accessory proteins are essential for the maturation and assembly of nitrogenase. Even though experimental evidence suggests that these accessory proteins are required for nitrogenase activity, the exact roles played by many of these proteins in the functions of nitrogenase are unclear []. Using yeast two-hybrid screening it has been shown that NifW can interact with itself as well as NifZ. ; GO: 0009399 nitrogen fixation
Probab=29.32 E-value=2.1e+02 Score=20.26 Aligned_cols=31 Identities=23% Similarity=0.373 Sum_probs=14.2
Q ss_pred chHHHHHHHHHHHHHHHHhhhcCCCCCceeee
Q 025714 201 SFDSFVECGMVVKGLTEKFKEKDPRYTGSATL 232 (249)
Q Consensus 201 ~~~eF~~~l~~~~~~~~~f~~~d~~~~G~i~~ 232 (249)
.|++|+..--.-+.+.++|+....+.. .|++
T Consensus 70 AY~dFv~S~p~~ekvFkVf~~~~~~~~-fV~l 100 (105)
T PF03206_consen 70 AYQDFVTSTPLEEKVFKVFKDAAPPRT-FVPL 100 (105)
T ss_pred HHHHHhcCChhhhHHHHHHHhcCCCCc-EeeH
Confidence 344444432233455555555555443 4443
No 310
>cd08306 Death_FADD Fas-associated Death Domain protein-protein interaction domain. Death domain (DD) found in FAS-associated via death domain (FADD). FADD is a component of the death-inducing signaling complex (DISC) and serves as an adaptor in the signaling pathway of death receptor proteins. It modulates apoptosis as well as non-apoptotic processes such as cell cycle progression, survival, innate immune signaling, and hematopoiesis. FADD contains an N-terminal DED and a C-terminal DD. Its DD interacts with the DD of the activated death receptor, FAS, and its DED recruits the initiator caspases, caspase-8 and -10, to the DISC complex via a homotypic interaction with the N-terminal DED of the caspase. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain),
Probab=28.94 E-value=1.8e+02 Score=19.49 Aligned_cols=71 Identities=7% Similarity=0.059 Sum_probs=39.0
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCcccCHHHHHHHHHcHHHHHHHHHHHcCCCCCcccHHHHHHHHHHcCCC
Q 025714 97 NELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCLGQWRAIFERYDRDRSGKIDLMELRDALYSIGYA 176 (249)
Q Consensus 97 ~el~~~l~~lg~~~s~~~~~~l~~~~d~~~~~g~i~~~eF~~~~~~~~~~~~~F~~~D~d~~G~I~~~el~~~l~~~g~~ 176 (249)
.+.+.+.+.+| +++.++..+-..... .+ .+.-..++ ..|+. ..| ..-+...|.++|+.++..
T Consensus 14 ~~Wk~laR~LG--lse~~Id~i~~~~~~-----~~-~eq~~~mL-------~~W~~--~~g-~~At~~~L~~aL~~~~l~ 75 (86)
T cd08306 14 RDWRKLARKLG--LSETKIESIEEAHPR-----NL-REQVRQSL-------REWKK--IKK-KEAKVADLIKALRDCQLN 75 (86)
T ss_pred hhHHHHHHHcC--CCHHHHHHHHHHCCC-----CH-HHHHHHHH-------HHHHH--hHC-cchHHHHHHHHHHHcCcH
Confidence 35666777775 677777766543221 11 11111111 12222 223 345788999999999876
Q ss_pred CCHHHHHHH
Q 025714 177 VPPSVLQLL 185 (249)
Q Consensus 177 l~~~~~~~l 185 (249)
...+.++..
T Consensus 76 ~~ad~i~~~ 84 (86)
T cd08306 76 LVADLVEEK 84 (86)
T ss_pred HHHHHHHHh
Confidence 666666544
No 311
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=28.89 E-value=1.3e+02 Score=27.09 Aligned_cols=28 Identities=4% Similarity=0.083 Sum_probs=19.1
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHhc
Q 025714 163 LMELRDALYSIGYAVPPSVLQLLMDKYD 190 (249)
Q Consensus 163 ~~el~~~l~~~g~~l~~~~~~~l~~~~d 190 (249)
.+|.+-+...+....++.++++||..|.
T Consensus 122 ~~e~KLFvg~lsK~~te~evr~iFs~fG 149 (510)
T KOG0144|consen 122 VEERKLFVGMLSKQCTENEVREIFSRFG 149 (510)
T ss_pred ccchhhhhhhccccccHHHHHHHHHhhC
Confidence 3444445555666788888888888884
No 312
>KOG0869 consensus CCAAT-binding factor, subunit A (HAP3) [Transcription]
Probab=28.71 E-value=1.4e+02 Score=22.74 Aligned_cols=83 Identities=16% Similarity=0.237 Sum_probs=51.9
Q ss_pred CCcccHHHHHHHHHhc-CC--CCCHHHHHHHHHHhcCCCCCcccCHHHHHHHHHcHHHHHHHHHHHcCCCCCcccHHHHH
Q 025714 91 SGFIDENELQQALSSG-YQ--RFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCLGQWRAIFERYDRDRSGKIDLMELR 167 (249)
Q Consensus 91 ~g~I~~~el~~~l~~l-g~--~~s~~~~~~l~~~~d~~~~~g~i~~~eF~~~~~~~~~~~~~F~~~D~d~~G~I~~~el~ 167 (249)
|..+....+.++++.. -. .+++ +.+..++. ...||+.++.. ++=+++..++--+|+.++|.
T Consensus 30 Dr~LPIANV~RIMK~~lP~naKIsK-DAKE~vQE----------CVSEfISFvT~-----EAsekC~~EkRKTIngdDll 93 (168)
T KOG0869|consen 30 DRFLPIANVSRIMKKALPANAKISK-DAKETVQE----------CVSEFISFVTG-----EASEKCQREKRKTINGDDLL 93 (168)
T ss_pred hhhccHHHHHHHHHhcCCcccccch-HHHHHHHH----------HHHHHHHHHhh-----HHHHHHHHHhcCcccHHHHH
Confidence 4567777777777743 11 1221 22222222 23477777764 35566666777899999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHh
Q 025714 168 DALYSIGYAVPPSVLQLLMDKY 189 (249)
Q Consensus 168 ~~l~~~g~~l~~~~~~~l~~~~ 189 (249)
-+|.++|+.--.+-+...+.+|
T Consensus 94 wAm~tLGFe~Y~eplkiyL~kY 115 (168)
T KOG0869|consen 94 WAMSTLGFENYAEPLKIYLQKY 115 (168)
T ss_pred HHHHHcCcHhHHHHHHHHHHHH
Confidence 9999999766556666655554
No 313
>PF04361 DUF494: Protein of unknown function (DUF494); InterPro: IPR007456 Members of this family of uncharacterised proteins are often named Smg.
Probab=28.62 E-value=1.9e+02 Score=22.04 Aligned_cols=44 Identities=20% Similarity=0.262 Sum_probs=33.3
Q ss_pred HHHHHHHHH-cCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhc
Q 025714 145 QWRAIFERY-DRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYD 190 (249)
Q Consensus 145 ~~~~~F~~~-D~d~~G~I~~~el~~~l~~~g~~l~~~~~~~l~~~~d 190 (249)
-+..+|+.| |.+.+-..+.+++.+-|.+.| ..+++|.+.+.-++
T Consensus 4 VL~yLfE~y~~~~~~~~~d~~~L~~~L~~aG--F~~~eI~~Al~WL~ 48 (155)
T PF04361_consen 4 VLMYLFENYIDFESDACPDQDDLTRELSAAG--FEDEEINKALDWLE 48 (155)
T ss_pred HHHHHHHHHcCCccccCCCHHHHHHHHHHcC--CCHHHHHHHHHHHH
Confidence 345678887 444577889999999999999 67888887666544
No 314
>PHA03155 hypothetical protein; Provisional
Probab=28.41 E-value=2.3e+02 Score=20.38 Aligned_cols=87 Identities=17% Similarity=0.160 Sum_probs=51.9
Q ss_pred cccHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCcccCHHHHHHHHHc----H--HHHHHHHHHHcCCCCCcccHHHH
Q 025714 93 FIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSC----L--GQWRAIFERYDRDRSGKIDLMEL 166 (249)
Q Consensus 93 ~I~~~el~~~l~~lg~~~s~~~~~~l~~~~d~~~~~g~i~~~eF~~~~~~----~--~~~~~~F~~~D~d~~G~I~~~el 166 (249)
-.+.+||..-|..| .+-+..+..-+..-.. ..++.++-.+=-.++.. + ...+.+-.....+-.+.++.+++
T Consensus 7 ~~tvEeLaaeL~kL--~~ENK~LKkkl~~~~~-p~d~~LT~~qKea~I~s~v~~Lt~~A~~KIe~kVrk~~~~~vTk~q~ 83 (115)
T PHA03155 7 CADVEELEKELQKL--KIENKALKKKLLQHGN-PEDELLTPAQKDAIINSLVNKLTKKAEEKIRERVLKDLLPLVSKNQC 83 (115)
T ss_pred CCCHHHHHHHHHHH--HHHHHHHHHHHHccCC-CCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHH
Confidence 35667777777665 3334555555544333 55677777664433322 1 34555666666666788888999
Q ss_pred HHHHHHcCC--CCCHHHH
Q 025714 167 RDALYSIGY--AVPPSVL 182 (249)
Q Consensus 167 ~~~l~~~g~--~l~~~~~ 182 (249)
.++|..+.+ .++-++.
T Consensus 84 ~~al~~lt~RidvSmde~ 101 (115)
T PHA03155 84 MEAIADIKYRIDVSIDES 101 (115)
T ss_pred HHHHhcCeeeEEecccch
Confidence 888887644 3444443
No 315
>PF14771 DUF4476: Domain of unknown function (DUF4476)
Probab=28.35 E-value=1.9e+02 Score=19.57 Aligned_cols=12 Identities=8% Similarity=0.025 Sum_probs=6.0
Q ss_pred ccCHHHHHHHHH
Q 025714 130 RIGPKEFADLWS 141 (249)
Q Consensus 130 ~i~~~eF~~~~~ 141 (249)
.++-.+.+.++.
T Consensus 39 ~~T~~Qv~~il~ 50 (95)
T PF14771_consen 39 CFTCAQVKQILS 50 (95)
T ss_pred ceeHHHHHHHHH
Confidence 355555555443
No 316
>cd07316 terB_like_DjlA N-terminal tellurium resistance protein terB-like domain of heat shock DnaJ-like proteins. Tellurium resistance terB-like domain of the DnaJ-like DjlA proteins. This family represents the terB-like domain of DjlA-like proteins, a subgroup of heat shock DnaJ-like proteins. Escherichia coli DjlA is a type III membrane protein with a small N-terminal transmembrane region and DnaJ-like domain on the extreme C-terminus. Overproduction has been shown to activate the RcsC pathway, which regulates the production of the capsular exopolysaccharide colanic acid. The specific function of this domain is unknown.
Probab=28.29 E-value=2e+02 Score=19.63 Aligned_cols=11 Identities=18% Similarity=0.531 Sum_probs=6.0
Q ss_pred CCcccHHHHHH
Q 025714 158 SGKIDLMELRD 168 (249)
Q Consensus 158 ~G~I~~~el~~ 168 (249)
||.++..|...
T Consensus 13 DG~v~~~E~~~ 23 (106)
T cd07316 13 DGRVSEAEIQA 23 (106)
T ss_pred cCCcCHHHHHH
Confidence 45666655543
No 317
>PF02761 Cbl_N2: CBL proto-oncogene N-terminus, EF hand-like domain; InterPro: IPR014741 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the EF hand-like domain.; GO: 0005509 calcium ion binding; PDB: 3OP0_A 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B ....
Probab=28.22 E-value=2e+02 Score=19.57 Aligned_cols=47 Identities=17% Similarity=-0.034 Sum_probs=23.6
Q ss_pred CcccHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCCCCCcccchHHHHHH
Q 025714 159 GKIDLMELRDALYSIGYAVPPSVLQLLMDKYDNRSGSRKLGLSFDSFVEC 208 (249)
Q Consensus 159 G~I~~~el~~~l~~~g~~l~~~~~~~l~~~~d~~~~~~~g~i~~~eF~~~ 208 (249)
-.|...+|+..|....--....+...+-..+|.. .++.|+-=||--+
T Consensus 21 ~IVPW~~F~~~L~~~h~~~~~~~~~aLk~TiDlT---~n~~iS~FeFdvF 67 (85)
T PF02761_consen 21 TIVPWSEFRQALQKVHPISSGLEAMALKSTIDLT---CNDYISNFEFDVF 67 (85)
T ss_dssp SEEEHHHHHHHHHHHS--SSHHHHHHHHHHH-TT---SSSEEEHHHHHHH
T ss_pred eEeeHHHHHHHHHHhcCCCchHHHHHHHHHHhcc---cCCccchhhhHHH
Confidence 4566666666666543323334445555555555 5566665555443
No 318
>PF09107 SelB-wing_3: Elongation factor SelB, winged helix ; InterPro: IPR015191 This entry represents a domain with a winged helix-type fold, which consists of a closed 3-helical bundle with a right-handed twist, and a small beta-sheet wing []. Different winged helix domains share a common structure, but can differ in sequence. This entry is designated "type 3". The winged helix motif is involved in both DNA and RNA binding. In the elongation factor SelB, the winged helix domains recognise RNA, allowing the complex to wrap around the small ribosomal subunit. In bacteria, the incorporation of the amino acid selenocysteine into proteins requires elongation factor SelB, which binds both transfer RNA (tRNA) and mRNA. SelB binds to an mRNA hairpin formed by the selenocysteine insertion sequence (SECIS) with extremely high specificity []. ; GO: 0003723 RNA binding, 0003746 translation elongation factor activity, 0005525 GTP binding, 0001514 selenocysteine incorporation, 0005737 cytoplasm; PDB: 2PJP_A 2UWM_A 1WSU_B 1LVA_A 2PLY_A.
Probab=28.21 E-value=1.1e+02 Score=18.32 Aligned_cols=29 Identities=21% Similarity=0.172 Sum_probs=20.9
Q ss_pred CCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhcC
Q 025714 91 SGFIDENELQQALSSGYQRFSLSTIRLLMFLFRN 124 (249)
Q Consensus 91 ~g~I~~~el~~~l~~lg~~~s~~~~~~l~~~~d~ 124 (249)
.|.|+..+|++++ .++...+-.++..+|.
T Consensus 8 ~~~itv~~~rd~l-----g~sRK~ai~lLE~lD~ 36 (50)
T PF09107_consen 8 NGEITVAEFRDLL-----GLSRKYAIPLLEYLDR 36 (50)
T ss_dssp TSSBEHHHHHHHH-----TS-HHHHHHHHHHHHH
T ss_pred CCcCcHHHHHHHH-----CccHHHHHHHHHHHhc
Confidence 5778888888877 4667777777777765
No 319
>PLN02508 magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase
Probab=28.17 E-value=93 Score=26.84 Aligned_cols=13 Identities=15% Similarity=0.383 Sum_probs=5.8
Q ss_pred CCHHHHHHHHHHh
Q 025714 110 FSLSTIRLLMFLF 122 (249)
Q Consensus 110 ~s~~~~~~l~~~~ 122 (249)
...++++.++..+
T Consensus 38 ~~~~e~~A~l~Ef 50 (357)
T PLN02508 38 LDMAEFEALLQEF 50 (357)
T ss_pred hhHHHHHHHHHHH
Confidence 3344444444443
No 320
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=27.56 E-value=4.2e+02 Score=23.20 Aligned_cols=16 Identities=25% Similarity=0.403 Sum_probs=11.0
Q ss_pred CCCcccHHHHHHHHHh
Q 025714 90 RSGFIDENELQQALSS 105 (249)
Q Consensus 90 ~~g~I~~~el~~~l~~ 105 (249)
++..|+..-+.+++..
T Consensus 368 RNraiSSSAIsrAvsd 383 (498)
T KOG4849|consen 368 RNRAISSSAISRAVSD 383 (498)
T ss_pred hcchhhHHHHHHHhcc
Confidence 3567888777777763
No 321
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=27.43 E-value=4.5e+02 Score=23.51 Aligned_cols=29 Identities=17% Similarity=0.281 Sum_probs=14.0
Q ss_pred HHHHHHhhhcCCCCCceeee-cHHHHHHHH
Q 025714 213 KGLTEKFKEKDPRYTGSATL-TYESFMSIV 241 (249)
Q Consensus 213 ~~~~~~f~~~d~~~~G~i~~-~~~~~~~~~ 241 (249)
..+.+-|+.+-..+-|+..+ ||++...-+
T Consensus 243 ~tllkNWq~LavtHPGYmAFLTYDEVk~RL 272 (563)
T KOG1785|consen 243 KTLLKNWQTLAVTHPGYMAFLTYDEVKARL 272 (563)
T ss_pred HHHHHhhhhhhccCCceeEEeeHHHHHHHH
Confidence 44445555555555555432 555444333
No 322
>cd08780 Death_TRADD Death Domain of Tumor Necrosis Factor Receptor 1-Associated Death Domain protein. Death domain (DD) of TRADD (TNF Receptor 1-Associated Death Domain or TNFRSF1A-associated via death domain) protein. TRADD is a central signaling adaptor for TNF-receptor 1 (TNFR1), mediating activation of Nuclear Factor -kappaB (NF-kB) and c-Jun N-terminal kinase (JNK), as well as caspase-dependent apoptosis. It also carries important immunological roles including germinal center formation, DR3-mediated T-cell stimulation, and TNFalpha-mediated inflammatory responses. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into s
Probab=27.37 E-value=2.1e+02 Score=19.62 Aligned_cols=67 Identities=16% Similarity=0.166 Sum_probs=40.7
Q ss_pred HHHHHHHHhcCCC---CCHHHHHHHHHHhcCCCCCcccCHHHHHHHHHcHHHHHHHHHHH-cCCCCCcccHHHHHHHHHH
Q 025714 97 NELQQALSSGYQR---FSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCLGQWRAIFERY-DRDRSGKIDLMELRDALYS 172 (249)
Q Consensus 97 ~el~~~l~~lg~~---~s~~~~~~l~~~~d~~~~~g~i~~~eF~~~~~~~~~~~~~F~~~-D~d~~G~I~~~el~~~l~~ 172 (249)
.+.+.+.+.+|.. +++..++.|-..++. ++ ..+.+...++.+ ..+|. .-+...|.++|+.
T Consensus 14 r~WK~laR~Lg~~cral~d~~ID~I~~~y~r-~g--------------L~EqvyQ~L~~W~~~eg~-~Atv~~Lv~AL~~ 77 (90)
T cd08780 14 KKWKPVGRSLQKNCRALRDPAIDNLAYEYDR-EG--------------LYEQAYQLLRRFIQSEGK-KATLQRLVQALEE 77 (90)
T ss_pred HHHHHHHHHHcccccccchhHHHHHHhhccc-cc--------------HHHHHHHHHHHHHHhccc-cchHHHHHHHHHH
Confidence 4667777777643 777788887777765 33 112233333333 22333 3788999999998
Q ss_pred cCCCCCH
Q 025714 173 IGYAVPP 179 (249)
Q Consensus 173 ~g~~l~~ 179 (249)
.+.....
T Consensus 78 c~l~~lA 84 (90)
T cd08780 78 NGLTSLA 84 (90)
T ss_pred ccchHHH
Confidence 8765443
No 323
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=27.35 E-value=46 Score=35.06 Aligned_cols=63 Identities=11% Similarity=0.123 Sum_probs=44.0
Q ss_pred HHHHHHHHHHcCCCCCcccHHHHHHHHHHcCCCC----CHHHHHHHHHHhcCCCCCCCcccchHHHHHHHH
Q 025714 144 GQWRAIFERYDRDRSGKIDLMELRDALYSIGYAV----PPSVLQLLMDKYDNRSGSRKLGLSFDSFVECGM 210 (249)
Q Consensus 144 ~~~~~~F~~~D~d~~G~I~~~el~~~l~~~g~~l----~~~~~~~l~~~~d~~~~~~~g~i~~~eF~~~l~ 210 (249)
++..++|..||.+..|.|...++..+|+.+.-++ ..+. +.+-..+... .++.|++.+-...+.
T Consensus 1417 ~~F~~vW~~fDpeatg~I~~~~~~~~lr~L~ppL~~~k~~~~-kli~mdmp~~---~gd~V~f~d~L~aL~ 1483 (1592)
T KOG2301|consen 1417 EKFYEAWDEFDPEATQEIPYSDLSAFLRSLDPPLDLGKPNKR-KLISMDLPMV---SGDRVHCLDILFALT 1483 (1592)
T ss_pred HHHHHHHHhcChhhheeeeHhhHHHHHHhcCCccccCCCCCc-eeeeeecCcC---CCCeeehhhHHHHHH
Confidence 5667799999999999999999999999864322 2222 3334445555 667888777665443
No 324
>TIGR01565 homeo_ZF_HD homeobox domain, ZF-HD class. This model represents a class of homoebox domain that differs substantially from the typical homoebox domain described in pfam model pfam00046. It is found in both C4 and C3 plants.
Probab=26.86 E-value=80 Score=19.68 Aligned_cols=33 Identities=12% Similarity=0.068 Sum_probs=25.0
Q ss_pred CCCCCCchHHHHHHHHhcCCCCCc----ccHHHHHHHHHhcC
Q 025714 70 AFPPGTHPDVIRSFEMVDRDRSGF----IDENELQQALSSGY 107 (249)
Q Consensus 70 ~l~~~~~~~l~~~F~~~D~d~~g~----I~~~el~~~l~~lg 107 (249)
.|++++...+.+.|.. .|+ ++..+...+...+|
T Consensus 7 ~Ft~~Q~~~Le~~fe~-----~~y~~~~~~~~~r~~la~~lg 43 (58)
T TIGR01565 7 KFTAEQKEKMRDFAEK-----LGWKLKDKRREEVREFCEEIG 43 (58)
T ss_pred CCCHHHHHHHHHHHHH-----cCCCCCCCCHHHHHHHHHHhC
Confidence 4788888888888875 455 77777777777775
No 325
>PF13335 Mg_chelatase_2: Magnesium chelatase, subunit ChlI
Probab=26.76 E-value=2.2e+02 Score=19.61 Aligned_cols=68 Identities=16% Similarity=0.173 Sum_probs=47.1
Q ss_pred CCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCcccCHHHHHHHHHcHHHHHHHHHHHcCCCCCcccHHHHHH
Q 025714 89 DRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCLGQWRAIFERYDRDRSGKIDLMELRD 168 (249)
Q Consensus 89 d~~g~I~~~el~~~l~~lg~~~s~~~~~~l~~~~d~~~~~g~i~~~eF~~~~~~~~~~~~~F~~~D~d~~G~I~~~el~~ 168 (249)
..++.|+..++...+ .++......+-..+.. +.++...+..++. -+.-.-|.++.-.|..+++.+
T Consensus 27 ~~Na~l~~~~l~~~~-----~l~~~~~~~l~~~~~~----~~lS~R~~~rilr------vARTIADL~~~~~I~~~hi~E 91 (96)
T PF13335_consen 27 KCNAQLPGEELRKYC-----PLSSEAKKLLEQAAEK----LNLSARGYHRILR------VARTIADLEGSERITREHIAE 91 (96)
T ss_pred CccccCCHHHHHhHc-----CCCHHHHHHHHHHHHH----cCcCHHHHHHHHH------HHHHHHhHcCCCCCCHHHHHH
Confidence 347788888887764 4555544444444444 5677777666654 466777889999999999988
Q ss_pred HHH
Q 025714 169 ALY 171 (249)
Q Consensus 169 ~l~ 171 (249)
+|.
T Consensus 92 Al~ 94 (96)
T PF13335_consen 92 ALS 94 (96)
T ss_pred HHh
Confidence 764
No 326
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=26.58 E-value=1.2e+02 Score=16.50 Aligned_cols=18 Identities=28% Similarity=0.510 Sum_probs=13.0
Q ss_pred cccHHHHHHHHHHcCCCC
Q 025714 160 KIDLMELRDALYSIGYAV 177 (249)
Q Consensus 160 ~I~~~el~~~l~~~g~~l 177 (249)
.++..|+++.|+..|...
T Consensus 3 ~l~v~eLk~~l~~~gL~~ 20 (35)
T PF02037_consen 3 KLTVAELKEELKERGLST 20 (35)
T ss_dssp TSHHHHHHHHHHHTTS-S
T ss_pred cCcHHHHHHHHHHCCCCC
Confidence 467788888888887653
No 327
>PF09415 CENP-X: CENP-S associating Centromere protein X; InterPro: IPR018552 Centromere protein X (CENP-X) is a component of the CENP-S complex. The CENP-S complex is composed of at least of CENP-S and CENP-X and is essential for the stable assembly of the outer kinetchore []. CENP-X is also a DNA-binding component of the Fanconi anemia (FA) core complex involved in DNA damage repair and genome maintenance. The FA complex is composed of CENPS, FANCA, FANCB, FANCC, FANCE, FANCF, FANCG, FANCL/PHF9, FANCM, FAAP24 and CENPX. Interacts with CENPS, FANCM and FAAP24 [, ].; PDB: 4DRB_L 4DRA_H 3V9R_D.
Probab=26.57 E-value=1.7e+02 Score=19.13 Aligned_cols=40 Identities=15% Similarity=0.153 Sum_probs=23.9
Q ss_pred HHHHHHHHHcHHHHHHHHHHHcCCCCCcccHHHHHHHHHH
Q 025714 133 PKEFADLWSCLGQWRAIFERYDRDRSGKIDLMELRDALYS 172 (249)
Q Consensus 133 ~~eF~~~~~~~~~~~~~F~~~D~d~~G~I~~~el~~~l~~ 172 (249)
..+|+.++....-.|.+...-+.+.++.|..++|.+++-.
T Consensus 28 ~~eyl~iFV~EAv~Ra~~~a~~e~~~~~le~e~LEki~pq 67 (72)
T PF09415_consen 28 SAEYLRIFVREAVARAAEQAEAEGDEGFLEVEHLEKILPQ 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT-SSEE-HHHHHHHCHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 4566666666555555665555444445999998887643
No 328
>COG4086 Predicted secreted protein [Function unknown]
Probab=26.57 E-value=1.5e+02 Score=24.93 Aligned_cols=80 Identities=11% Similarity=0.147 Sum_probs=47.3
Q ss_pred ccHHHHHHHHH----HcCCCCCHHHHHHHHHHhcCCCCCCCcccchHHHHHHHHHHH-HHHHHhhhcCCCCCceeeecHH
Q 025714 161 IDLMELRDALY----SIGYAVPPSVLQLLMDKYDNRSGSRKLGLSFDSFVECGMVVK-GLTEKFKEKDPRYTGSATLTYE 235 (249)
Q Consensus 161 I~~~el~~~l~----~~g~~l~~~~~~~l~~~~d~~~~~~~g~i~~~eF~~~l~~~~-~~~~~f~~~d~~~~G~i~~~~~ 235 (249)
.+.++++++.+ .+++.+++.+++.+...+-.- .+-.|+|..-..-|...+ .++..++..+ ..|.|. .--
T Consensus 210 ~~~~dirkvv~dv~~~ynvnltd~qvn~i~~~~~~~---~~~n~d~~kv~~~L~qa~d~l~~~~~~~e--a~~il~-~i~ 283 (299)
T COG4086 210 DDPADIRKVVDDVANNYNVNLTDTQVNQIVNLFLAM---SNLNIDWTKVQGQLKQAKDSLKWFLQRDE--AKGILE-RIG 283 (299)
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh---hccCccHHHhhhHHHHHHHHHHHHHHhhh--hhHHHH-HHH
Confidence 57888887665 578899999999998887665 555666665555444322 2222332222 222211 114
Q ss_pred HHHHHHhhccc
Q 025714 236 SFMSIVIPFIV 246 (249)
Q Consensus 236 ~~~~~~~~~~~ 246 (249)
+|+..+..+|+
T Consensus 284 ~f~ssi~nalv 294 (299)
T COG4086 284 DFLSSIWNALV 294 (299)
T ss_pred HHHHHHHHHHH
Confidence 47777766665
No 329
>PF08044 DUF1707: Domain of unknown function (DUF1707); InterPro: IPR012551 This domain is found in a variety of actinomycetales proteins. All of the proteins containing this domain are hypothetical and probably membrane bound or associated. Currently, it is unclear to the function of this domain.
Probab=26.41 E-value=80 Score=19.23 Aligned_cols=29 Identities=24% Similarity=0.276 Sum_probs=14.5
Q ss_pred CCcccHHHHHHHHHHcCCCCCHHHHHHHH
Q 025714 158 SGKIDLMELRDALYSIGYAVPPSVLQLLM 186 (249)
Q Consensus 158 ~G~I~~~el~~~l~~~g~~l~~~~~~~l~ 186 (249)
.|.|+.+||.+-+...-...+..++..++
T Consensus 21 ~GrL~~~Ef~~R~~~a~~A~t~~eL~~l~ 49 (53)
T PF08044_consen 21 EGRLSLDEFDERLDAAYAARTRGELDALF 49 (53)
T ss_pred CCCCCHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 45666666655554443334444444443
No 330
>PF04695 Pex14_N: Peroxisomal membrane anchor protein (Pex14p) conserved region; InterPro: IPR006785 This conserved region defines a group of peroxisomal membrane anchor proteins which bind the PTS1 (peroxisomal targeting signal) receptor and are required for the import of PTS1-containing proteins into peroxisomes. Loss of functional Pex14p results in defects in both the PTS1 and PTS2-dependent import pathways. Deletion analysis of this conserved region implicates it in selective peroxisome degradation. In the majority of members this region is situated at the N terminus of the protein [, ].; GO: 0005777 peroxisome, 0016020 membrane; PDB: 2W85_A 2W84_A 3FF5_B.
Probab=26.27 E-value=2.7e+02 Score=20.53 Aligned_cols=45 Identities=9% Similarity=0.014 Sum_probs=27.7
Q ss_pred HHHHHHHHcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhcCC
Q 025714 146 WRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYDNR 192 (249)
Q Consensus 146 ~~~~F~~~D~d~~G~I~~~el~~~l~~~g~~l~~~~~~~l~~~~d~~ 192 (249)
+..+-+.+....=..-..+.=+++|+.=| |+++||++++......
T Consensus 6 i~~A~~FL~~p~V~~sp~~~k~~FL~sKG--Lt~~EI~~al~~a~~~ 50 (136)
T PF04695_consen 6 IEQAVKFLQDPKVRNSPLEKKIAFLESKG--LTEEEIDEALGRAGSP 50 (136)
T ss_dssp HHHHHHHHCTTTCCCS-HHHHHHHHHHCT----HHHHHHHHHHHT--
T ss_pred HHHHHHHhCCcccccCCHHHHHHHHHcCC--CCHHHHHHHHHhcCCc
Confidence 34444555444445556667777888877 9999999999988765
No 331
>PF04876 Tenui_NCP: Tenuivirus major non-capsid protein; InterPro: IPR006960 This entry contains the tenuivirus major non-capsid protein. Proteins accumulate in large amounts in tenuivirus infected cells. They are found in the inclusion bodies that are formed after infection [].
Probab=26.20 E-value=2.9e+02 Score=20.92 Aligned_cols=55 Identities=13% Similarity=0.082 Sum_probs=27.5
Q ss_pred HHHHHHHHhcCCCCCcccCHHHHHHHHHc-HHHHHHHHHHHcCCCCCcccHHHHHHHHHH
Q 025714 114 TIRLLMFLFRNPHDSLRIGPKEFADLWSC-LGQWRAIFERYDRDRSGKIDLMELRDALYS 172 (249)
Q Consensus 114 ~~~~l~~~~d~~~~~g~i~~~eF~~~~~~-~~~~~~~F~~~D~d~~G~I~~~el~~~l~~ 172 (249)
.+..++..-+. +.++.|++..|..++.. +..|....-+- ....++.+.++.++..
T Consensus 84 ~Lehllg~~~~-~~n~~i~~~~ff~~lQ~~lGdWIT~~~Lk---h~n~MSk~Qik~L~~~ 139 (175)
T PF04876_consen 84 FLEHLLGGEDD-STNGLIDIGKFFDILQPKLGDWITKNFLK---HPNRMSKDQIKTLCEQ 139 (175)
T ss_pred HHHHHhcCCcC-CcccceeHHHHHHHHHHHhhhHHHHHHHh---ccchhhHHHHHHHHHH
Confidence 33444433333 34667888777766643 33333222221 1246677777666653
No 332
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=26.12 E-value=96 Score=27.53 Aligned_cols=57 Identities=19% Similarity=0.211 Sum_probs=40.2
Q ss_pred HHHHHHHHHcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCCCCCcccchHHHHH
Q 025714 145 QWRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYDNRSGSRKLGLSFDSFVE 207 (249)
Q Consensus 145 ~~~~~F~~~D~d~~G~I~~~el~~~l~~~g~~l~~~~~~~l~~~~d~~~~~~~g~i~~~eF~~ 207 (249)
...++|..+.. -+|.|+...-+.-+- +-.+....+-++++..|.+ .||.++=+||.-
T Consensus 445 ~yde~fy~l~p-~~gk~sg~~ak~~mv--~sklpnsvlgkiwklad~d---~dg~ld~eefal 501 (532)
T KOG1954|consen 445 TYDEIFYTLSP-VNGKLSGRNAKKEMV--KSKLPNSVLGKIWKLADID---KDGMLDDEEFAL 501 (532)
T ss_pred chHhhhhcccc-cCceeccchhHHHHH--hccCchhHHHhhhhhhcCC---cccCcCHHHHHH
Confidence 45556666643 357777666655543 3347788889999999998 889999999864
No 333
>PF12307 DUF3631: Protein of unknown function (DUF3631); InterPro: IPR022081 This domain is found in uncharacterised proteins and in tripartite motif containing (TRIM) protein 41. This protein functions as an E3 ligase that catalyzes the ubiquitin-mediated degradation of protein kinase C [].
Probab=25.90 E-value=1.9e+02 Score=22.78 Aligned_cols=47 Identities=32% Similarity=0.461 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHcCCCCCcccHHHHHHHHHHc----------CCCCCHHHHHHHHHHhcCC
Q 025714 143 LGQWRAIFERYDRDRSGKIDLMELRDALYSI----------GYAVPPSVLQLLMDKYDNR 192 (249)
Q Consensus 143 ~~~~~~~F~~~D~d~~G~I~~~el~~~l~~~----------g~~l~~~~~~~l~~~~d~~ 192 (249)
+..++.+|..- +.-.|+..+|...|... |..|+...+..+++.|+..
T Consensus 102 L~DIr~vf~~~---~~~~i~T~dLl~~L~~~~e~pW~~~~~g~~Lt~r~La~~L~~ygI~ 158 (184)
T PF12307_consen 102 LADIREVFEAG---GEDRIPTADLLDALNADEEAPWATWNRGKPLTPRQLAKLLKEYGIR 158 (184)
T ss_pred HHHHHHHHccC---CCCcccHHHHHHHHHhCCCCchhhcCCCCCCCHHHHHHHHHHCCCC
Confidence 45667777663 33689999999999864 4568999999999999764
No 334
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=25.82 E-value=2.6e+02 Score=26.77 Aligned_cols=73 Identities=25% Similarity=0.219 Sum_probs=51.2
Q ss_pred CCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCCCCCcccchHHHHHHHHHH--------------HHHHHHhhhcC
Q 025714 158 SGKIDLMELRDALYSIGYAVPPSVLQLLMDKYDNRSGSRKLGLSFDSFVECGMVV--------------KGLTEKFKEKD 223 (249)
Q Consensus 158 ~G~I~~~el~~~l~~~g~~l~~~~~~~l~~~~d~~~~~~~g~i~~~eF~~~l~~~--------------~~~~~~f~~~d 223 (249)
+| |+.+|+. .-..--++.++.++...|. .+|.++-+++..+++.+ +....+++..|
T Consensus 2 ~~-~~~~~~~-----~~~~~~d~~l~~~f~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (646)
T KOG0039|consen 2 EG-ISFQELK-----ITDCSYDDKLQTFFDMYDK----GDGKLTEEEVRELIMSSISANWLSLIKKQTEEYAALIMEELD 71 (646)
T ss_pred CC-cchhhhc-----ccCCChhHHHHHHHHHHhh----hcCCccHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhhhcc
Confidence 56 8888887 2233456778888888888 67888888888776653 34446677788
Q ss_pred CCCCceeeecHHHHHHH
Q 025714 224 PRYTGSATLTYESFMSI 240 (249)
Q Consensus 224 ~~~~G~i~~~~~~~~~~ 240 (249)
.++.|.+...-..++..
T Consensus 72 ~~~~~y~~~~~~~~ll~ 88 (646)
T KOG0039|consen 72 PDHKGYITNEDLEILLL 88 (646)
T ss_pred ccccceeeecchhHHHH
Confidence 88998776655555443
No 335
>PF04157 EAP30: EAP30/Vps36 family; InterPro: IPR007286 EAP30 is a subunit of the ELL complex. The ELL is an 80kDa RNA polymerase II transcription factor. ELL interacts with three other proteins to form the complex known as ELL complex. The ELL complex is capable of increasing that catalytic rate of transcription elongation, but is unable to repress initiation of transcription by RNA polymerase II as is the case of ELL. EAP30 is thought to lead to the derepression of ELL's transcriptional inhibitory activity. ; PDB: 2ZME_A 3CUQ_A 1W7P_D 1U5T_B.
Probab=25.79 E-value=3.5e+02 Score=21.71 Aligned_cols=59 Identities=14% Similarity=0.079 Sum_probs=31.9
Q ss_pred CHHHHHHHHHcHHHHHHHHHHHcCCCCCcccHHHHHHHHHHcC---CCCCHHHHHHHHHHhcCC
Q 025714 132 GPKEFADLWSCLGQWRAIFERYDRDRSGKIDLMELRDALYSIG---YAVPPSVLQLLMDKYDNR 192 (249)
Q Consensus 132 ~~~eF~~~~~~~~~~~~~F~~~D~d~~G~I~~~el~~~l~~~g---~~l~~~~~~~l~~~~d~~ 192 (249)
+..+|..-+.. ++.++....-....|.|+..|+...+.+.. ..++++++...++.+..-
T Consensus 87 ~~~~f~~ELa~--qi~e~c~~~~~~~GGii~L~dl~~~~nr~R~g~~lISp~Di~~A~~~l~~l 148 (223)
T PF04157_consen 87 GSGDFYYELAV--QIAEVCLATRSKNGGIISLSDLYCRYNRARGGSELISPEDILRACKLLEVL 148 (223)
T ss_dssp CHHHHHHHHHH--HHHHHHHHHCCTTTSEEEHHHHHHHHHHCTTTSST--HHHHHHHHHHHCCC
T ss_pred cchhHHHHHHH--HHHHHHHHHHhcCCCEEEHHHHHHHHHHhcccCCCcCHHHHHHHHHHHHHc
Confidence 55565543331 222333333333347788888777776542 247777777777777654
No 336
>COG1508 RpoN DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog [Transcription]
Probab=25.72 E-value=5.1e+02 Score=23.54 Aligned_cols=88 Identities=10% Similarity=-0.017 Sum_probs=50.0
Q ss_pred CCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHH---hcCCCCCcccCHHHHHHHHHcH--------HHHHHHHHHHcCCC
Q 025714 89 DRSGFIDENELQQALSSGYQRFSLSTIRLLMFL---FRNPHDSLRIGPKEFADLWSCL--------GQWRAIFERYDRDR 157 (249)
Q Consensus 89 d~~g~I~~~el~~~l~~lg~~~s~~~~~~l~~~---~d~~~~~g~i~~~eF~~~~~~~--------~~~~~~F~~~D~d~ 157 (249)
|.+|++... +..+...++. +..++++.++.. +|. -|-|.-++.|.+.+.-.. ..+..-|..
T Consensus 121 dd~GYl~~~-le~~~~~l~~-~~~~eve~vl~~iQ~ldP-~GV~Ar~l~EcL~lQL~~~~~~~~~~~~v~~~l~l----- 192 (444)
T COG1508 121 DDEGYLTES-LEEIAELLGS-VDEEEVEKVLARIQSLDP-AGVGARDLRECLLLQLERRPLDDPALEIVIDHLEL----- 192 (444)
T ss_pred CcCCCcccC-HHHHHHhccc-ccHHHHHHHHHHHhcCCC-CccccCcHHHHHHHHHHhcCCCChhHHHHHHHHHH-----
Confidence 457877765 5555555543 566676666554 566 888888888887765321 112222222
Q ss_pred CCcccHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q 025714 158 SGKIDLMELRDALYSIGYAVPPSVLQLLMDKY 189 (249)
Q Consensus 158 ~G~I~~~el~~~l~~~g~~l~~~~~~~l~~~~ 189 (249)
+-..+|..+.+.++ ++.+++.+++..+
T Consensus 193 ---la~~d~~~i~~~~~--v~~~dl~~~l~~I 219 (444)
T COG1508 193 ---LARRDFTTIARELK--VDEDELKEALLLI 219 (444)
T ss_pred ---HHhhhHHHHHHHhC--CCHHHHHHHHHHH
Confidence 23334555555555 5666666655543
No 337
>PF01316 Arg_repressor: Arginine repressor, DNA binding domain; InterPro: IPR020900 The arginine dihydrolase (AD) pathway is found in many prokaryotes and some primitive eukaryotes, an example of the latter being Giardia lamblia (Giardia intestinalis) []. The three-enzyme anaerobic pathway breaks down L-arginine to form 1 mol of ATP, carbon dioxide and ammonia. In simpler bacteria, the first enzyme, arginine deiminase, can account for up to 10% of total cell protein []. Most prokaryotic arginine deiminase pathways are under the control of a repressor gene, termed ArgR []. This is a negative regulator, and will only release the arginine deiminase operon for expression in the presence of arginine []. The crystal structure of apo-ArgR from Bacillus stearothermophilus has been determined to 2.5A by means of X-ray crystallography []. The protein exists as a hexamer of identical subunits, and is shown to have six DNA-binding domains, clustered around a central oligomeric core when bound to arginine. It predominantly interacts with A.T residues in ARG boxes. This hexameric protein binds DNA at its N terminus to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbour-joining tree, some of these paralogous sequences show long branches and differ significantly from the well-conserved C-terminal region. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0006525 arginine metabolic process; PDB: 1AOY_A 3V4G_A 3LAJ_D 3FHZ_A 3LAP_B 3ERE_D 2P5L_C 1F9N_D 2P5K_A 1B4A_A ....
Probab=25.50 E-value=1.5e+02 Score=19.25 Aligned_cols=32 Identities=16% Similarity=0.104 Sum_probs=23.5
Q ss_pred CcccHHHHHHHHHHcCCCCCHHHHHHHHHHhc
Q 025714 159 GKIDLMELRDALYSIGYAVPPSVLQLLMDKYD 190 (249)
Q Consensus 159 G~I~~~el~~~l~~~g~~l~~~~~~~l~~~~d 190 (249)
..-+-+||.+.|...|+.+|...+...++.+.
T Consensus 18 ~i~sQ~eL~~~L~~~Gi~vTQaTiSRDLkeL~ 49 (70)
T PF01316_consen 18 EISSQEELVELLEEEGIEVTQATISRDLKELG 49 (70)
T ss_dssp ---SHHHHHHHHHHTT-T--HHHHHHHHHHHT
T ss_pred CcCCHHHHHHHHHHcCCCcchhHHHHHHHHcC
Confidence 46688999999999999999999998888874
No 338
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=25.13 E-value=1.5e+02 Score=17.26 Aligned_cols=38 Identities=21% Similarity=0.345 Sum_probs=25.7
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCCCCCcccchHHHHH
Q 025714 163 LMELRDALYSIGYAVPPSVLQLLMDKYDNRSGSRKLGLSFDSFVE 207 (249)
Q Consensus 163 ~~el~~~l~~~g~~l~~~~~~~l~~~~d~~~~~~~g~i~~~eF~~ 207 (249)
.+|...+|..+| .++.+++.+++..... ..++.++.+.
T Consensus 3 ~~d~~~AL~~LG--y~~~e~~~av~~~~~~-----~~~~~e~~ik 40 (47)
T PF07499_consen 3 LEDALEALISLG--YSKAEAQKAVSKLLEK-----PGMDVEELIK 40 (47)
T ss_dssp HHHHHHHHHHTT--S-HHHHHHHHHHHHHS-----TTS-HHHHHH
T ss_pred HHHHHHHHHHcC--CCHHHHHHHHHHhhcC-----CCCCHHHHHH
Confidence 467888999999 6788888888888532 1245666655
No 339
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=24.95 E-value=1.6e+02 Score=25.59 Aligned_cols=34 Identities=18% Similarity=0.185 Sum_probs=19.1
Q ss_pred CCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhcC
Q 025714 158 SGKIDLMELRDALYSIGYAVPPSVLQLLMDKYDN 191 (249)
Q Consensus 158 ~G~I~~~el~~~l~~~g~~l~~~~~~~l~~~~d~ 191 (249)
+|.|+++|-.+.++.......++.++.+++.++.
T Consensus 300 ~G~itReeal~~v~~~d~~~~~~~~~~~~~~lg~ 333 (343)
T TIGR03573 300 SGRITREEAIELVKEYDGEFPKEDLEYFLKYLGI 333 (343)
T ss_pred cCCCCHHHHHHHHHHhcccccHHHHHHHHHHhCC
Confidence 4666666666666654334445555655555544
No 340
>PF14223 UBN2: gag-polypeptide of LTR copia-type
Probab=24.67 E-value=2.5e+02 Score=19.65 Aligned_cols=47 Identities=11% Similarity=0.123 Sum_probs=23.6
Q ss_pred cccHHHHH-HHHHHcCCCCCHHHHHHHHHHhcCCCCCCCcccchHHHHHHHHHHH
Q 025714 160 KIDLMELR-DALYSIGYAVPPSVLQLLMDKYDNRSGSRKLGLSFDSFVECGMVVK 213 (249)
Q Consensus 160 ~I~~~el~-~~l~~~g~~l~~~~~~~l~~~~d~~~~~~~g~i~~~eF~~~l~~~~ 213 (249)
.|+-.++. .+|+.+. ..++.++..+.... .-..+++++++..|...+
T Consensus 63 ~i~d~~~v~~iL~~Lp-----~~y~~~~~~i~~~~--~~~~~t~~el~~~L~~~E 110 (119)
T PF14223_consen 63 PISDEDLVSKILRSLP-----PSYDTFVTAIRNSK--DLPKMTLEELISRLLAEE 110 (119)
T ss_pred cccchhHHHHHHhcCC-----chhHHHHHHHHhcC--CCCcCCHHHHHHHHHHHH
Confidence 44444443 3444433 33444444443320 122368999988776543
No 341
>COG0721 GatC Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit [Translation, ribosomal structure and biogenesis]
Probab=24.34 E-value=1.4e+02 Score=20.75 Aligned_cols=31 Identities=13% Similarity=0.145 Sum_probs=24.0
Q ss_pred cccHHHHHHHHHHcCCCCCHHHHHHHHHHhc
Q 025714 160 KIDLMELRDALYSIGYAVPPSVLQLLMDKYD 190 (249)
Q Consensus 160 ~I~~~el~~~l~~~g~~l~~~~~~~l~~~~d 190 (249)
.|+.++++++.+-..+.+++++++.+...+.
T Consensus 2 ~i~~e~v~~la~LarL~lseee~e~~~~~l~ 32 (96)
T COG0721 2 AIDREEVKHLAKLARLELSEEELEKFATQLE 32 (96)
T ss_pred ccCHHHHHHHHHHhhcccCHHHHHHHHHHHH
Confidence 5788888888887777888888877666553
No 342
>COG2979 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.09 E-value=3.9e+02 Score=21.59 Aligned_cols=91 Identities=15% Similarity=0.142 Sum_probs=51.0
Q ss_pred CCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCcccCHHHHHHHHHcHHHHHHHHHH--HcCCCCCcccHHHH
Q 025714 89 DRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCLGQWRAIFER--YDRDRSGKIDLMEL 166 (249)
Q Consensus 89 d~~g~I~~~el~~~l~~lg~~~s~~~~~~l~~~~d~~~~~g~i~~~eF~~~~~~~~~~~~~F~~--~D~d~~G~I~~~el 166 (249)
..||.|+..|-..+..++...=...+.+.++..-= ..-++.++........+...++|-. +-.|.+.+..+.=|
T Consensus 122 kaDGhIDe~ERa~I~~~l~esG~d~e~~~~le~El----~~PlD~~~ia~~a~~ee~a~ElY~ASrl~id~d~r~Er~YL 197 (225)
T COG2979 122 KADGHIDEKERARIMQKLQESGVDPEAQAFLEQEL----EQPLDPDEIAAAARNEEQALELYLASRLAIDDDSRMERSYL 197 (225)
T ss_pred hhcCCcCHHHHHHHHHHHHHcCCCHHHHHHHHHHH----hCCCCHHHHHHHhcCHHHHHHHHHHHHHhcCchhHHHHHHH
Confidence 45899999999999865433222335555544321 2368999999988876544444322 22233344444333
Q ss_pred HHHHHHcCCCCCHHHHHHH
Q 025714 167 RDALYSIGYAVPPSVLQLL 185 (249)
Q Consensus 167 ~~~l~~~g~~l~~~~~~~l 185 (249)
-.+-..++ +.+..++.+
T Consensus 198 ~~La~~L~--L~dalvd~l 214 (225)
T COG2979 198 NALAGALG--LPDALVDHL 214 (225)
T ss_pred HHHHHHhC--CCHHHHHHH
Confidence 33344455 555555544
No 343
>PRK14981 DNA-directed RNA polymerase subunit F; Provisional
Probab=24.06 E-value=1.4e+02 Score=21.24 Aligned_cols=26 Identities=27% Similarity=0.373 Sum_probs=13.6
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHH
Q 025714 163 LMELRDALYSIGYAVPPSVLQLLMDK 188 (249)
Q Consensus 163 ~~el~~~l~~~g~~l~~~~~~~l~~~ 188 (249)
.+|++.++-.....++++++++++..
T Consensus 81 ~dElrai~~~~~~~~~~e~l~~ILd~ 106 (112)
T PRK14981 81 RDELRAIFAKERYTLSPEELDEILDI 106 (112)
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 45555555555445555555555443
No 344
>TIGR03685 L21P_arch 50S ribosomal protein L12P. This model represents the L12P protein of the large (50S) subunit of the archaeal ribosome.
Probab=24.03 E-value=2.7e+02 Score=19.70 Aligned_cols=32 Identities=19% Similarity=0.298 Sum_probs=29.0
Q ss_pred cccHHHHHHHHHHcCCCCCHHHHHHHHHHhcC
Q 025714 160 KIDLMELRDALYSIGYAVPPSVLQLLMDKYDN 191 (249)
Q Consensus 160 ~I~~~el~~~l~~~g~~l~~~~~~~l~~~~d~ 191 (249)
.|+.+.+..+|...|..+....+..+.+.+..
T Consensus 16 ~iT~e~I~~IL~AAGv~ve~~~~~~la~~L~g 47 (105)
T TIGR03685 16 EINEENLKAVLEAAGVEVDEARVKALVAALEG 47 (105)
T ss_pred CCCHHHHHHHHHHhCCcccHHHHHHHHHHHcC
Confidence 89999999999999999999999998888855
No 345
>PF11593 Med3: Mediator complex subunit 3 fungal; InterPro: IPR020998 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents the subunit Med3, which is a physical target for Cyc8-Tup1, a yeast transcriptional co-repressor []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=23.92 E-value=2.7e+02 Score=24.47 Aligned_cols=49 Identities=18% Similarity=0.133 Sum_probs=28.5
Q ss_pred CcccHHHHHHHHHhcCCCCCHHHHHHHHHHh-cCCCCCcccCHHHHHHHHHcH
Q 025714 92 GFIDENELQQALSSGYQRFSLSTIRLLMFLF-RNPHDSLRIGPKEFADLWSCL 143 (249)
Q Consensus 92 g~I~~~el~~~l~~lg~~~s~~~~~~l~~~~-d~~~~~g~i~~~eF~~~~~~~ 143 (249)
..++.+||+..|.. +-. +++.|...+... +. =---++-|.||+..++.+
T Consensus 6 ~~~~LeeLe~kLa~-~d~-~Kd~V~~~I~ea~~s-ILPlRL~FNeFi~tma~I 55 (379)
T PF11593_consen 6 PNLKLEELEEKLAS-NDN-SKDSVMDKISEAQDS-ILPLRLQFNEFIQTMANI 55 (379)
T ss_pred CCCcHHHHHHHHhc-CCc-hHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHh
Confidence 45677777777763 222 444444444433 22 224567788888888765
No 346
>KOG1161 consensus Protein involved in vacuolar polyphosphate accumulation, contains SPX domain [Inorganic ion transport and metabolism]
Probab=23.91 E-value=3.6e+02 Score=23.19 Aligned_cols=16 Identities=25% Similarity=0.387 Sum_probs=12.1
Q ss_pred CCcccHHHHHHHHHhc
Q 025714 91 SGFIDENELQQALSSG 106 (249)
Q Consensus 91 ~g~I~~~el~~~l~~l 106 (249)
+.+|+..+|++.|+..
T Consensus 17 ~~yinYk~LKK~lK~~ 32 (310)
T KOG1161|consen 17 DKYINYKELKKLLKQY 32 (310)
T ss_pred hhhcCHHHHHHHHHHh
Confidence 4678888888888765
No 347
>PHA02335 hypothetical protein
Probab=23.79 E-value=2.7e+02 Score=19.73 Aligned_cols=48 Identities=13% Similarity=0.157 Sum_probs=33.1
Q ss_pred CCcccCHHHHHHHHHcHHHHHHHHHHHcCCCCC--cccHHHHHHHHHHcC
Q 025714 127 DSLRIGPKEFADLWSCLGQWRAIFERYDRDRSG--KIDLMELRDALYSIG 174 (249)
Q Consensus 127 ~~g~i~~~eF~~~~~~~~~~~~~F~~~D~d~~G--~I~~~el~~~l~~~g 174 (249)
.-..|+.++|..=+.+..-++..|++|...|+- .+=...+..+...++
T Consensus 21 np~sVt~ddf~~DlkRi~yIkrllKRy~~~~~~k~hlIlNhlI~l~NvF~ 70 (118)
T PHA02335 21 NPQSVTYDDFEEDLKRFKYIKRLFKRYLNTGELKTHLILNHIIILYNVFG 70 (118)
T ss_pred CcccccHHHHHHHHHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhh
Confidence 346799999999999999999999999776554 223344444444443
No 348
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=23.41 E-value=73 Score=20.73 Aligned_cols=44 Identities=18% Similarity=0.137 Sum_probs=24.6
Q ss_pred cccchHHHHHHHHHHHHH---HHHhhhcCCCCCceeee-cHHHHHHHHh
Q 025714 198 LGLSFDSFVECGMVVKGL---TEKFKEKDPRYTGSATL-TYESFMSIVI 242 (249)
Q Consensus 198 g~i~~~eF~~~l~~~~~~---~~~f~~~d~~~~G~i~~-~~~~~~~~~~ 242 (249)
..++|++++..+...=.+ .-.++..|.+++ .|++ +.++|..++.
T Consensus 19 ~~~s~~dL~~~i~~~~~~~~~~~~l~Y~Dedgd-~v~l~sd~Dl~~a~~ 66 (81)
T smart00666 19 RDISFEDLRSKVAKRFGLDNQSFTLKYQDEDGD-LVSLTSDEDLEEAIE 66 (81)
T ss_pred CCCCHHHHHHHHHHHhCCCCCCeEEEEECCCCC-EEEecCHHHHHHHHH
Confidence 367888888766554222 122233455555 6666 5566666553
No 349
>TIGR02933 nifM_nitrog nitrogen fixation protein NifM. Members of this protein family, found in a subset of nitrogen-fixing bacteria, are the nitrogen fixation protein NifM. NifM, homologous to peptidyl-prolyl cis-trans isomerases, appears to be an accessory protein for NifH, the Fe protein, also called component II or dinitrogenase reductase, of nitrogenase.
Probab=23.37 E-value=3.3e+02 Score=22.43 Aligned_cols=51 Identities=16% Similarity=0.049 Sum_probs=29.1
Q ss_pred cccHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCCCCCcccchHHHHHHHHHH
Q 025714 160 KIDLMELRDALYSIGYAVPPSVLQLLMDKYDNRSGSRKLGLSFDSFVECGMVV 212 (249)
Q Consensus 160 ~I~~~el~~~l~~~g~~l~~~~~~~l~~~~d~~~~~~~g~i~~~eF~~~l~~~ 212 (249)
.|...-+.+..+.+|+.+++++++.....+...= ....+++++|...+..-
T Consensus 35 lI~e~l~lq~A~~~gi~v~~~ev~~~~e~~~~~L--~~~G~~~~~~r~~ir~~ 85 (256)
T TIGR02933 35 RHIEQAVVRAADEIGVVIPPSLLEEAPQALAQAL--DEQALDAAERRAMLAHH 85 (256)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH--HHcCCCHHHHHHHHHHH
Confidence 3444444555566788888888855544432110 12347888888776543
No 350
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=23.29 E-value=1.8e+02 Score=25.23 Aligned_cols=36 Identities=19% Similarity=0.116 Sum_probs=18.5
Q ss_pred CcccCHHHHHHHHHcH------HHHHHHHHHHcCCCCCcccHHHHHHH
Q 025714 128 SLRIGPKEFADLWSCL------GQWRAIFERYDRDRSGKIDLMELRDA 169 (249)
Q Consensus 128 ~g~i~~~eF~~~~~~~------~~~~~~F~~~D~d~~G~I~~~el~~~ 169 (249)
.|.|+-+|=+.++... +.+..+++.++ |+.+||.++
T Consensus 300 ~G~itReeal~~v~~~d~~~~~~~~~~~~~~lg------~t~~ef~~~ 341 (343)
T TIGR03573 300 SGRITREEAIELVKEYDGEFPKEDLEYFLKYLG------ISEEEFWKT 341 (343)
T ss_pred cCCCCHHHHHHHHHHhcccccHHHHHHHHHHhC------CCHHHHHHH
Confidence 3566666666555442 34444555552 455555544
No 351
>TIGR03764 ICE_PFGI_1_parB integrating conjugative element, PFGI_1 class, ParB family protein. Members of this protein family carry the ParB-type nuclease domain and are found in integrating conjugative elements (ICE) in the same class as PFGI-1 of Pseudomonas fluorescens Pf-5.
Probab=23.11 E-value=4.5e+02 Score=21.96 Aligned_cols=63 Identities=21% Similarity=0.135 Sum_probs=32.2
Q ss_pred cccHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCC------CCcccCHHHHHHHHHcHHHHHHHHHHHcC
Q 025714 93 FIDENELQQALSSGYQRFSLSTIRLLMFLFRNPH------DSLRIGPKEFADLWSCLGQWRAIFERYDR 155 (249)
Q Consensus 93 ~I~~~el~~~l~~lg~~~s~~~~~~l~~~~d~~~------~~g~i~~~eF~~~~~~~~~~~~~F~~~D~ 155 (249)
.++.+|+...+.+-|+.++...+..+++.+.... -...|+-..+..+.........+|..+-.
T Consensus 136 ~ltq~ela~~lgk~g~~isrs~Isn~lrll~~L~~~i~~~l~~glGr~~~~~L~~L~~~a~~~w~~~~~ 204 (258)
T TIGR03764 136 SLSQRELARRLSADGYPISQSHISRMGDTVEYLYPAIPNLLYSGLGRPQIEKLLSLRKAAEKIWNRYSS 204 (258)
T ss_pred CCCHHHHHHHhcccCCCCCHHHHHHHHHHHHhChHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHcc
Confidence 4666666666666566666655555555444100 01224444455555444555555655543
No 352
>cd08327 CARD_RAIDD Caspase activation and recruitment domain of RIP-associated ICH-1 homologous protein with a death domain. Caspase activation and recruitment domain (CARD) of RAIDD (RIP-associated ICH-1 homologous protein with a death domain), also known as CRADD (Caspase and RIP adaptor). RAIDD is an adaptor protein that together with the p53-inducible protein PIDD and caspase-2, forms the PIDDosome complex, which is required for caspase-2 activation and plays a role in mediating stress-induced apoptosis. RAIDD contains an N-terminal CARD, which interacts with the caspase-2 CARD, and a C-terminal Death domain (DD), which interacts with the DD of PIDD. In general, CARDs are DDs associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodime
Probab=22.93 E-value=2.6e+02 Score=19.25 Aligned_cols=46 Identities=17% Similarity=0.124 Sum_probs=29.8
Q ss_pred CCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCcccCHHHHHHHHHc
Q 025714 91 SGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSC 142 (249)
Q Consensus 91 ~g~I~~~el~~~l~~lg~~~s~~~~~~l~~~~d~~~~~g~i~~~eF~~~~~~ 142 (249)
+|.|+.++...+-. ..-+.+.+..++..+-. -|.--|..|+.++..
T Consensus 33 ~gIlT~~~~e~I~a---~~T~~~k~~~LLdiLp~---RG~~AF~~F~~aL~e 78 (94)
T cd08327 33 EGILTESHVEEIES---QTTSRRKTMKLLDILPS---RGPKAFHAFLDSLEE 78 (94)
T ss_pred CCCCCHHHHHHHHc---cCChHHHHHHHHHHHHh---hChhHHHHHHHHHHH
Confidence 57777777766654 23445677777777654 455677777777654
No 353
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=22.78 E-value=2.1e+02 Score=23.85 Aligned_cols=22 Identities=9% Similarity=0.126 Sum_probs=9.2
Q ss_pred HHHHHcCCCCCcccHHHHHHHH
Q 025714 149 IFERYDRDRSGKIDLMELRDAL 170 (249)
Q Consensus 149 ~F~~~D~d~~G~I~~~el~~~l 170 (249)
+.+.|+.......+..++...+
T Consensus 97 a~~lf~~~k~~~~~l~~~~~~~ 118 (267)
T PRK09430 97 AQQAFREGKEPDFPLREKLRQF 118 (267)
T ss_pred HHHHHHHhcccCCCHHHHHHHH
Confidence 3444444444444444444333
No 354
>PF13623 SurA_N_2: SurA N-terminal domain
Probab=22.75 E-value=1.5e+02 Score=22.25 Aligned_cols=20 Identities=20% Similarity=0.335 Sum_probs=13.9
Q ss_pred HHHHHHcCCCCCHHHHHHHH
Q 025714 167 RDALYSIGYAVPPSVLQLLM 186 (249)
Q Consensus 167 ~~~l~~~g~~l~~~~~~~l~ 186 (249)
.+-.+++|+.++++|+..++
T Consensus 96 ~~e~eklGi~Vs~~El~d~l 115 (145)
T PF13623_consen 96 EQEFEKLGITVSDDELQDML 115 (145)
T ss_pred HHHHHHhCCccCHHHHHHHH
Confidence 33444578888888887777
No 355
>PF03556 Cullin_binding: Cullin binding; InterPro: IPR005176 The eukaryotic defective in cullin neddylation (DCN) protein family, may contribute to neddylation of cullin components of SCF-type E3 ubiquitin ligase complexes. These multi-protein complexes are required for polyubiquitination and subsequent degradation of target proteins by the 26S proteasome []. Proteins in the DCN family include: Yeast DCN1. Vertebrate DCN1-like protein 1. Vertebrate DCN1-like protein 2. Vertebrate DCN1-like protein 4. This entry represents a domain found within DCN family proteins. Its function is unknown but it has been suggested that it has the features of a basic helix-loop-helix leucine zipper (bHLH-ZIP) domain [].It is often found in association with a UBA-like domain (IPR009060 from INTERPRO).; PDB: 3TDI_A 2IS9_A 3O6B_E 3O2P_A 3BQ3_A 3TDZ_A 3TDU_B.
Probab=22.65 E-value=3e+02 Score=19.77 Aligned_cols=89 Identities=12% Similarity=0.087 Sum_probs=51.4
Q ss_pred HHHHHHcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCCCCCcccchHHHHHHHHHHHHHHHHhhhcCCCCC
Q 025714 148 AIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYDNRSGSRKLGLSFDSFVECGMVVKGLTEKFKEKDPRYT 227 (249)
Q Consensus 148 ~~F~~~D~d~~G~I~~~el~~~l~~~g~~l~~~~~~~l~~~~d~~~~~~~g~i~~~eF~~~l~~~~~~~~~f~~~d~~~~ 227 (249)
.+|...=..|...|+.+.-..+++-+--.-....++..++-+... ....|+.+-+..++.-...+..-+..+|. +
T Consensus 28 f~F~~~~~~~qr~l~~e~Ai~~W~llf~~~~~~~l~~w~~Fl~~~---~~k~IskD~W~~~l~F~~~~~~dls~Yde--~ 102 (117)
T PF03556_consen 28 FTFDFAREEGQRSLPLETAIAYWRLLFSGRFFPLLDSWIEFLEEK---YKKAISKDTWNQFLDFFKTVDEDLSNYDE--E 102 (117)
T ss_dssp HHHHHHS-TT-SSEEHHHHHHHHHHHTTTTSSCCHHHHHHHHHHC---T-SEEEHHHHHHHHHHHHH-HCCHCC--T--T
T ss_pred HHHHHhCCcccCCCCHHHHHHHHHHHcCCCCcHHHHHHHHHHHHc---CCcCcChhHHHHHHHHHHhcCccccCCCC--C
Confidence 355555445567777777777766542111124455555555554 56778888888877777767667777774 5
Q ss_pred ceeeecHHHHHHHH
Q 025714 228 GSATLTYESFMSIV 241 (249)
Q Consensus 228 G~i~~~~~~~~~~~ 241 (249)
|....-.++|+..+
T Consensus 103 ~AWP~liDeFVe~~ 116 (117)
T PF03556_consen 103 GAWPSLIDEFVEWL 116 (117)
T ss_dssp SSS-HHHHHHHHHH
T ss_pred CCCcHHHHHHHHHh
Confidence 55677777777654
No 356
>PF02885 Glycos_trans_3N: Glycosyl transferase family, helical bundle domain Prosite entry for Thymidine and pyrimidine-nucleoside phosphorylases; InterPro: IPR017459 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. The glycosyl transferase family includes anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase (2.4.2.2 from EC) catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism. This N-terminal domain is found in various family 3 glycosyl transferases, including anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism.; PDB: 2DSJ_B 2ELC_B 2BPQ_A 1ZVW_B 3QR9_B 1V8G_B 2WK5_C 2J0F_C 2WK6_B 1UOU_A ....
Probab=22.42 E-value=2.1e+02 Score=17.94 Aligned_cols=15 Identities=7% Similarity=-0.004 Sum_probs=5.4
Q ss_pred CCCCHHHHHHHHHHh
Q 025714 175 YAVPPSVLQLLMDKY 189 (249)
Q Consensus 175 ~~l~~~~~~~l~~~~ 189 (249)
..++.+++..++..+
T Consensus 13 ~~Ls~~e~~~~~~~i 27 (66)
T PF02885_consen 13 EDLSREEAKAAFDAI 27 (66)
T ss_dssp ----HHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 344555555544444
No 357
>PF12486 DUF3702: ImpA domain protein ; InterPro: IPR021069 This entry represents a conserved region located towards the C-terminal end of ImpA and related proteins. ImpA is an inner membrane protein, which has been suggested to be involved with proteins that are exported and associated with colony variations in Actinobacillus actinomycetemcomitans []. Note that many members are hypothetical proteins.
Probab=22.41 E-value=3.5e+02 Score=20.46 Aligned_cols=46 Identities=17% Similarity=0.209 Sum_probs=38.1
Q ss_pred CcccCHHHHHHHHHcHHHHHHHHHHHcCCCCCcccHHHHHHHHHHc
Q 025714 128 SLRIGPKEFADLWSCLGQWRAIFERYDRDRSGKIDLMELRDALYSI 173 (249)
Q Consensus 128 ~g~i~~~eF~~~~~~~~~~~~~F~~~D~d~~G~I~~~el~~~l~~~ 173 (249)
...-....|...+..++.+..-....|..+.++|+..||+.++-.+
T Consensus 53 ~~~~~l~gW~q~~~~Lq~L~~rL~~le~~rg~Y~TiSeLKT~vy~i 98 (148)
T PF12486_consen 53 LPAPQLDGWHQGMTQLQQLADRLNQLEEQRGKYMTISELKTAVYQI 98 (148)
T ss_pred CCchhhchHHHHHHHHHHHHHHHHHHHHhcCCceeHHHHHHHHHHH
Confidence 3345667788888888899999999999998899999999988754
No 358
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=22.25 E-value=2e+02 Score=28.40 Aligned_cols=93 Identities=19% Similarity=0.265 Sum_probs=53.5
Q ss_pred HHHHHHHHcCCCCCcccHHHHHHHHHHcCCCCCHHH-HHHHHHHhcCCCCCCCcccchHHHHHHHHHH-----H----HH
Q 025714 146 WRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSV-LQLLMDKYDNRSGSRKLGLSFDSFVECGMVV-----K----GL 215 (249)
Q Consensus 146 ~~~~F~~~D~d~~G~I~~~el~~~l~~~g~~l~~~~-~~~l~~~~d~~~~~~~g~i~~~eF~~~l~~~-----~----~~ 215 (249)
++..+-..|......|+..+++.+|-.....++... +.+-+..... ..+.++|++|..+-..+ + ..
T Consensus 146 lrk~~ysvd~~~~~~isard~k~~l~qvn~k~~~~kfl~e~~ted~~----~k~dlsf~~f~~ly~~lmfs~~~a~l~e~ 221 (1267)
T KOG1264|consen 146 LRKQIYSVDQTRENSISARDLKTILPQVNFKVSSAKFLKEKFTEDGA----RKDDLSFEQFHLLYKKLMFSQQKAILLEF 221 (1267)
T ss_pred HHhhheeccchhhhheeHHhhhcccccceEEechHHHHHHHHhHhhh----ccccccHHHHHHHHHHHhhccchhhhhcc
Confidence 344455557667778999999999987776665433 2233333333 67789999998765544 1 11
Q ss_pred HHHhhhcCCCCCceeeecHHHHHHHHh
Q 025714 216 TEKFKEKDPRYTGSATLTYESFMSIVI 242 (249)
Q Consensus 216 ~~~f~~~d~~~~G~i~~~~~~~~~~~~ 242 (249)
.+.|-.-.+++.....+++.+|..++.
T Consensus 222 ~~~~~~~~~~~~d~~vV~~~ef~rFL~ 248 (1267)
T KOG1264|consen 222 KKDFILGNTDRPDASVVYLQEFQRFLI 248 (1267)
T ss_pred cchhhhcCCCCccceEeeHHHHHHHHH
Confidence 111222223333344566777766553
No 359
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=22.15 E-value=3.3e+02 Score=25.20 Aligned_cols=9 Identities=22% Similarity=0.279 Sum_probs=3.9
Q ss_pred HHHHHHHHH
Q 025714 133 PKEFADLWS 141 (249)
Q Consensus 133 ~~eF~~~~~ 141 (249)
-.|.+.++.
T Consensus 537 ~~~~~~~~~ 545 (562)
T TIGR01628 537 NSELLHLLE 545 (562)
T ss_pred HHHHHHHhc
Confidence 344444443
No 360
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=22.06 E-value=5.8e+02 Score=22.87 Aligned_cols=81 Identities=14% Similarity=-0.029 Sum_probs=46.8
Q ss_pred CCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCcccCHHHHHHHHHc---HHHHHHHHHHHcCCCCC---cccHH
Q 025714 91 SGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSC---LGQWRAIFERYDRDRSG---KIDLM 164 (249)
Q Consensus 91 ~g~I~~~el~~~l~~lg~~~s~~~~~~l~~~~d~~~~~g~i~~~eF~~~~~~---~~~~~~~F~~~D~d~~G---~I~~~ 164 (249)
...+.+.+|..+|...--..+.-+...+-...|. .+++.|+.-||-.+.+. ...+.+-|..+-..--| .++-+
T Consensus 188 k~ivPW~~F~q~L~~~Hpi~~gleAmaLktTIDL-tcnd~iS~FEFDvFTRLFqPw~tllkNWq~LavtHPGYmAFLTYD 266 (563)
T KOG1785|consen 188 KTIVPWKTFRQALHKVHPISSGLEAMALKTTIDL-TCNDFISNFEFDVFTRLFQPWKTLLKNWQTLAVTHPGYMAFLTYD 266 (563)
T ss_pred cccccHHHHHHHHHhcCCCcchhHHHHhhceecc-ccccceeeehhhhHHHhhccHHHHHHhhhhhhccCCceeEEeeHH
Confidence 3467777888888765433334455555556677 77777775555443333 23444445555444444 35667
Q ss_pred HHHHHHHH
Q 025714 165 ELRDALYS 172 (249)
Q Consensus 165 el~~~l~~ 172 (249)
|++.-|+.
T Consensus 267 EVk~RLqk 274 (563)
T KOG1785|consen 267 EVKARLQK 274 (563)
T ss_pred HHHHHHHH
Confidence 77776664
No 361
>PF09412 XendoU: Endoribonuclease XendoU; InterPro: IPR018998 This is a entry represents endoribonucleases involved in RNA biosynthesis which has been named XendoU in Xenopus laevis (African clawed frog). XendoU is a U-specific metal dependent enzyme that produces products with a 2'-3' cyclic phosphate termini. ; GO: 0016788 hydrolase activity, acting on ester bonds; PDB: 2C1W_C.
Probab=21.81 E-value=70 Score=26.76 Aligned_cols=120 Identities=15% Similarity=0.198 Sum_probs=58.6
Q ss_pred CCCchHHHHHHHHhcCC--CCCcccHHHHH---HHHHhcCCCCCHHHHHHHHHHhcCCCCCcccCHHHHHHHHHcHHHHH
Q 025714 73 PGTHPDVIRSFEMVDRD--RSGFIDENELQ---QALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCLGQWR 147 (249)
Q Consensus 73 ~~~~~~l~~~F~~~D~d--~~g~I~~~el~---~~l~~lg~~~s~~~~~~l~~~~d~~~~~g~i~~~eF~~~~~~~~~~~ 147 (249)
....+.+..+++.+..+ ....++.+|.. .+|.++ +....++.++..+-. .+--..+..+|+..+..
T Consensus 60 ~pTy~af~~LlDNY~~~tg~~E~~T~ee~~E~~~FLd~i---~~T~vmk~~~~fL~~-k~~~~~~~~~Fk~~L~~----- 130 (265)
T PF09412_consen 60 KPTYAAFIALLDNYERDTGVAEVVTPEERQEQDAFLDAI---METKVMKLAHQFLVS-KGLAPSDEAEFKKQLKN----- 130 (265)
T ss_dssp TSTHHHHHHHHHHTTSSSSTTT---HHHHHHHHHHHHHH---TTSHHHHHHHHHHHH-TTSS-SSHHHHHHHHHH-----
T ss_pred CCHHHHHHHHHhccccccCCcccCCHHHHHHHHHHHHHH---HcCHHHHHHHHHHHH-cCCCCCCHHHHHHHHHH-----
Confidence 34566777777766654 23456655543 344433 444456666655544 44455677888777663
Q ss_pred HHHHHHcCCCCCcccHHHHHHHHHHcCCCCCH--HHHHHHHHHhcCCCCCCCcccchHHHHH
Q 025714 148 AIFERYDRDRSGKIDLMELRDALYSIGYAVPP--SVLQLLMDKYDNRSGSRKLGLSFDSFVE 207 (249)
Q Consensus 148 ~~F~~~D~d~~G~I~~~el~~~l~~~g~~l~~--~~~~~l~~~~d~~~~~~~g~i~~~eF~~ 207 (249)
--|..|...+ |.++..-|.++.- |+.-.. .-+..+++-+..+ ..|.|+|..|+.
T Consensus 131 iWF~~Y~R~~-~~~dSSGFEHVFv--GE~k~~~V~G~HNWi~fy~~E---k~g~~dY~Gy~~ 186 (265)
T PF09412_consen 131 IWFGLYSRGS-GGLDSSGFEHVFV--GEIKGGEVSGFHNWIQFYLQE---KSGNVDYKGYIK 186 (265)
T ss_dssp HHTS-B-SST-TS--B-HHHHHTT--S-SSTTS------HHHHHHHH---HTTSEEEEEE--
T ss_pred hCCccccCCC-CCCCCcccceeee--eeecCCeEeeeEHHHHHHHHH---hcCCceEEEEEe
Confidence 2566775443 4466677776662 332211 1244556555555 567777777765
No 362
>cd00076 H4 Histone H4, one of the four histones, along with H2A, H2B and H3, which forms the eukaryotic nucleosome core; along with H3, it plays a central role in nucleosome formation; histones bind to DNA and wrap the genetic material into "beads on a string" in which DNA (the string) is wrapped around small blobs of histones (the beads) at regular intervals; play a role in the inheritance of specialized chromosome structures and the control of gene activity; defects in the establishment of proper chromosome structure by histones may activate or silence genes aberrantly and thus lead to disease; the sequence of histone H4 has remained almost invariant in more than 2 billion years of evolution
Probab=21.14 E-value=2.8e+02 Score=18.80 Aligned_cols=32 Identities=16% Similarity=0.188 Sum_probs=22.7
Q ss_pred HHHHHHHHcCCCCCcccHHHHHHHHHHcCCCC
Q 025714 146 WRAIFERYDRDRSGKIDLMELRDALYSIGYAV 177 (249)
Q Consensus 146 ~~~~F~~~D~d~~G~I~~~el~~~l~~~g~~l 177 (249)
++.+-..-...+--+|+.+++.-+|+..|.++
T Consensus 51 ~~dav~ya~Ha~RKTVt~~DV~~alkr~g~~~ 82 (85)
T cd00076 51 IRDAVTYTEHAKRKTVTAMDVVYALKRQGRTL 82 (85)
T ss_pred HHHHHHHHHhcCCCcCcHHHHHHHHHHCCCCc
Confidence 34444444556677899999999999887543
No 363
>PF06511 IpaD: Invasion plasmid antigen IpaD; InterPro: IPR009483 This family consists of several invasion plasmid antigen IpaD proteins. Entry of Shigella flexneri into epithelial cells and lysis of the phagosome involve the IpaB, IpaC, and IpaD proteins, which are secreted by type III secretion machinery, and appear to form a multi-protein complex capable of inducing the phagocytic event which internalizes the bacterium [].; GO: 0009405 pathogenesis; PDB: 3R9V_B 2JAA_B 2J0O_A 2J0N_B 2P7N_A 2YM9_A 3NZZ_A 3O02_A 3O00_A 2YM0_B ....
Probab=21.00 E-value=3.4e+02 Score=23.60 Aligned_cols=51 Identities=16% Similarity=0.170 Sum_probs=29.7
Q ss_pred cccHHHHHHHHHHcCCC--------------CCHHHHHHHHHHhcCCCCCCCcccchHHHHHHHH
Q 025714 160 KIDLMELRDALYSIGYA--------------VPPSVLQLLMDKYDNRSGSRKLGLSFDSFVECGM 210 (249)
Q Consensus 160 ~I~~~el~~~l~~~g~~--------------l~~~~~~~l~~~~d~~~~~~~g~i~~~eF~~~l~ 210 (249)
.++.+|....++.+|.. +...-|+.|+..++.-++.++..++-.+|-.+..
T Consensus 224 ~~~~~EA~~W~~eLg~~~~~vk~~~g~~~I~~D~spL~~m~~sl~~~~~~~~~~~~~a~~qaw~~ 288 (337)
T PF06511_consen 224 TVSQEEAEKWLKELGLPFFCVKQSGGGIVISPDMSPLDKMIKSLDGLGSNGDVELSTAEYQAWQA 288 (337)
T ss_dssp -BTHHHHHHHHHHHTTTGGGEEEETTCEEEEE-THHHHHHHHHHHHTTSTSCEEEEHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCCceEEecCCceEEEeCchHHHHHHHhccCCCCCCcccccHHHHHHHHH
Confidence 46778888888887632 3455678888777653210333454555655544
No 364
>PF12793 SgrR_N: Sugar transport-related sRNA regulator N-term
Probab=20.99 E-value=2.4e+02 Score=20.21 Aligned_cols=43 Identities=19% Similarity=0.417 Sum_probs=31.0
Q ss_pred HHHHHHHHHHcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhcCC
Q 025714 144 GQWRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYDNR 192 (249)
Q Consensus 144 ~~~~~~F~~~D~d~~G~I~~~el~~~l~~~g~~l~~~~~~~l~~~~d~~ 192 (249)
+....+++.|. .....++.+||.++|. .|+..+..+++++...
T Consensus 4 ~~y~~L~~~~~-~~~~~vtl~elA~~l~-----cS~Rn~r~lLkkm~~~ 46 (115)
T PF12793_consen 4 EQYQRLWQHYG-GQPVEVTLDELAELLF-----CSRRNARTLLKKMQEE 46 (115)
T ss_pred HHHHHHHHHcC-CCCcceeHHHHHHHhC-----CCHHHHHHHHHHHHHC
Confidence 34455666665 6667889999988874 6788888888887543
No 365
>PF09184 PPP4R2: PPP4R2; InterPro: IPR015267 PPP4R2 (protein phosphatase 4 core regulatory subunit R2) is the regulatory subunit of the histone H2A phosphatase complex. It has been shown to confer resistance to the anticancer drug cisplatin in yeast [], and may confer resistance in higher eukaryotes.
Probab=20.97 E-value=5.2e+02 Score=21.91 Aligned_cols=29 Identities=10% Similarity=0.068 Sum_probs=17.1
Q ss_pred HHHHHHHHHHcCCCCCcccHHHHHHHHHH
Q 025714 144 GQWRAIFERYDRDRSGKIDLMELRDALYS 172 (249)
Q Consensus 144 ~~~~~~F~~~D~d~~G~I~~~el~~~l~~ 172 (249)
..+..+....++.|.-...+..|+.++..
T Consensus 22 ~~L~~il~~ia~tg~~~~~W~~lk~l~~~ 50 (288)
T PF09184_consen 22 PELEDILEHIAKTGETWYPWSLLKSLFRH 50 (288)
T ss_pred HHHHHHHHHHHhhCCCcchHHHHHHHHHH
Confidence 45555566666665555566666666654
No 366
>CHL00185 ycf59 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=20.96 E-value=1.1e+02 Score=26.30 Aligned_cols=35 Identities=20% Similarity=0.250 Sum_probs=15.5
Q ss_pred cCCCCCHHHHHHHHHHhcC-CCCCcccCHHHHHHHH
Q 025714 106 GYQRFSLSTIRLLMFLFRN-PHDSLRIGPKEFADLW 140 (249)
Q Consensus 106 lg~~~s~~~~~~l~~~~d~-~~~~g~i~~~eF~~~~ 140 (249)
+......++++.++..+.. .+..-.+-=+||...+
T Consensus 34 ~dis~~~~e~~A~l~E~r~DyNr~HF~R~~eF~~~~ 69 (351)
T CHL00185 34 YDISSNIEEIEAILEEFRADYNQQHFIRDNEFNQSW 69 (351)
T ss_pred cCCchhHHHHHHHHHHHHhCccccccccChhhhhch
Confidence 3444455556666555432 0233333344444433
No 367
>KOG2419 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]
Probab=20.84 E-value=1e+02 Score=29.21 Aligned_cols=74 Identities=15% Similarity=0.197 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCcccCHHHHHHHHHc---------------HHHHHHHHHHHcCCCC---
Q 025714 97 NELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSC---------------LGQWRAIFERYDRDRS--- 158 (249)
Q Consensus 97 ~el~~~l~~lg~~~s~~~~~~l~~~~d~~~~~g~i~~~eF~~~~~~---------------~~~~~~~F~~~D~d~~--- 158 (249)
..|....-.--.....-....++..+|- +.++.++|.+|..+... +.+....|+.+|.+++
T Consensus 421 ~~~~s~sie~~v~~~~c~~~~~~s~~d~-~~~fk~sf~~~~~l~~~F~~vvaa~~~~~~D~~~~k~~~~~~lDl~g~~~~ 499 (975)
T KOG2419|consen 421 SRFFSCSIEDPVETEECFAKRILSIVDY-EEDFKLSFSEFSDLSFAFGNVVAANKLAWFDMLNEKEELFKALDLNGDPAH 499 (975)
T ss_pred hHHhhhhhhccccchhhhhhhccccccc-ccCceEeeehHHHHHHHHHHHHHhhhcchhhhcccchhheehhhccCCccc
Q ss_pred --------------------CcccHHHHHHHHH
Q 025714 159 --------------------GKIDLMELRDALY 171 (249)
Q Consensus 159 --------------------G~I~~~el~~~l~ 171 (249)
|.++.+|+..+|+
T Consensus 500 ~~~~~~lYs~vS~~~~~~s~~~vtVDe~v~ll~ 532 (975)
T KOG2419|consen 500 APKQPVLYSYVSYPFLKKSFGVVTVDELVALLA 532 (975)
T ss_pred CccccchhhhccccccccccCeeEHHHHHHHHH
No 368
>cd05832 Ribosomal_L12p Ribosomal protein L12p. This subfamily includes archaeal L12p, the protein that is functionally equivalent to L7/L12 in bacteria and the P1 and P2 proteins in eukaryotes. L12p is homologous to P1 and P2 but is not homologous to bacterial L7/L12. It is located in the L12 stalk, with proteins L10, L11, and 23S rRNA. L12p is the only protein in the ribosome to occur as multimers, always appearing as sets of dimers. Recent data indicate that most archaeal species contain six copies of L12p (three homodimers), while eukaryotes have four copies (two heterodimers), and bacteria may have four or six copies (two or three homodimers), depending on the species. The organization of proteins within the stalk has been characterized primarily in bacteria, where L7/L12 forms either two or three homodimers and each homodimer binds to the extended C-terminal helix of L10. L7/L12 is attached to the ribosome through L10 and is the only ribosomal protein that does not directly intera
Probab=20.62 E-value=3.2e+02 Score=19.38 Aligned_cols=32 Identities=19% Similarity=0.316 Sum_probs=29.0
Q ss_pred cccHHHHHHHHHHcCCCCCHHHHHHHHHHhcC
Q 025714 160 KIDLMELRDALYSIGYAVPPSVLQLLMDKYDN 191 (249)
Q Consensus 160 ~I~~~el~~~l~~~g~~l~~~~~~~l~~~~d~ 191 (249)
.|+.+.+..+|...|..+....+..+.+.+..
T Consensus 16 eITae~I~~IL~AAGveVd~~~~~ala~aL~g 47 (106)
T cd05832 16 EINEENLKKVLEAAGIEVDEARVKALVAALEE 47 (106)
T ss_pred CCCHHHHHHHHHHhCCcccHHHHHHHHHHHcC
Confidence 89999999999999999999999998888855
No 369
>COG5611 Predicted nucleic-acid-binding protein, contains PIN domain [General function prediction only]
Probab=20.61 E-value=3.4e+02 Score=19.66 Aligned_cols=64 Identities=14% Similarity=0.194 Sum_probs=46.6
Q ss_pred HHHHHHHHHcCCCCCcccHHHHHHHHHH--cCCCCCHHHHHHHHHHhcCCCCCCCcccchHHHHHHHHH
Q 025714 145 QWRAIFERYDRDRSGKIDLMELRDALYS--IGYAVPPSVLQLLMDKYDNRSGSRKLGLSFDSFVECGMV 211 (249)
Q Consensus 145 ~~~~~F~~~D~d~~G~I~~~el~~~l~~--~g~~l~~~~~~~l~~~~d~~~~~~~g~i~~~eF~~~l~~ 211 (249)
.....|..+...+.+.|+..-+.+..+- .|+....+.+..++...-.+ ..=.|...+|+.....
T Consensus 22 ka~Q~f~~~s~~~k~fI~~~vliE~V~vL~~~y~~~rE~i~~VIetll~~---~~f~V~~~d~i~~A~~ 87 (130)
T COG5611 22 KAEQFFEELSQKGKLFIPEEVLIELVYVLEHGYKWEREDIYEVIETLLND---ELFNVELKDFIREAIK 87 (130)
T ss_pred HHHHHHHhcCcCCCccchHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcc---ccceecchHHHHHHHH
Confidence 3567788888888999998888877764 47778888888888866555 4456667777654443
No 370
>PRK11511 DNA-binding transcriptional activator MarA; Provisional
Probab=20.61 E-value=3.3e+02 Score=19.54 Aligned_cols=57 Identities=2% Similarity=-0.011 Sum_probs=41.9
Q ss_pred CchHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCcccCHHHHHHHHHc
Q 025714 75 THPDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSC 142 (249)
Q Consensus 75 ~~~~l~~~F~~~D~d~~g~I~~~el~~~l~~lg~~~s~~~~~~l~~~~d~~~~~g~i~~~eF~~~~~~ 142 (249)
+...+.++...+..+-...++.+++.+.+ .++...+..+|+..- .+++.+|+..+..
T Consensus 7 ~~~~i~~~~~~I~~~~~~~~sl~~lA~~~-----g~S~~~l~r~Fk~~~------G~s~~~~l~~~Rl 63 (127)
T PRK11511 7 DAITIHSILDWIEDNLESPLSLEKVSERS-----GYSKWHLQRMFKKET------GHSLGQYIRSRKM 63 (127)
T ss_pred cHHHHHHHHHHHHHhcCCCCCHHHHHHHH-----CcCHHHHHHHHHHHH------CcCHHHHHHHHHH
Confidence 34556666666666666779999998776 578888888887653 3788898877664
No 371
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=20.55 E-value=5.1e+02 Score=23.54 Aligned_cols=56 Identities=4% Similarity=0.054 Sum_probs=30.7
Q ss_pred ccHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCcccCHHHHHHHHHcHH---HHHHHHHHH
Q 025714 94 IDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCLG---QWRAIFERY 153 (249)
Q Consensus 94 I~~~el~~~l~~lg~~~s~~~~~~l~~~~d~~~~~g~i~~~eF~~~~~~~~---~~~~~F~~~ 153 (249)
+..-++..++.........++.+.+...+-. |..++++|+.-+..+. -+..+.+.+
T Consensus 294 LGMGDv~sLvEk~~~~~d~e~a~~~~~kl~~----g~FtL~Df~~Ql~~m~kmGpl~~ll~mi 352 (451)
T COG0541 294 LGMGDVLSLIEKAEEVVDEEEAEKLAEKLKK----GKFTLEDFLEQLEQMKKMGPLSKLLSMI 352 (451)
T ss_pred cCcccHHHHHHHHHHhhhHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHccCCHHHHHHhC
Confidence 3334455555444334455556666665554 6688888887665432 344444444
No 372
>PRK10788 periplasmic folding chaperone; Provisional
Probab=20.52 E-value=7.3e+02 Score=23.43 Aligned_cols=95 Identities=11% Similarity=0.036 Sum_probs=58.2
Q ss_pred cccHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCcccCHHHHHHHHHcH--------------HHHHHHHHHHcCCCC
Q 025714 93 FIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCL--------------GQWRAIFERYDRDRS 158 (249)
Q Consensus 93 ~I~~~el~~~l~~lg~~~s~~~~~~l~~~~d~~~~~g~i~~~eF~~~~~~~--------------~~~~~~F~~~D~d~~ 158 (249)
.|+..=+....+.+|+.++.+++...+.....-..+|..+.+.|..++... -....+.+.+ -++
T Consensus 95 LI~~~Ll~q~A~~lgi~vsd~ev~~~I~~~p~Fq~~G~Fd~~~y~~~L~~~g~t~~~f~~~ir~~l~~~~l~~~i--~~~ 172 (623)
T PRK10788 95 LIDEALLDQYARELGLGISDEQVKQAIFATPAFQTDGKFDNNKYLAILNQMGMTADQYAQALRQQLTTQQLINGV--AGT 172 (623)
T ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHHhCcccccCCCcCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH--hhc
Confidence 344444555566789999999999888764210235778887777776431 1122233333 244
Q ss_pred CcccHHHHHHHHHHc------------------CCCCCHHHHHHHHHHh
Q 025714 159 GKIDLMELRDALYSI------------------GYAVPPSVLQLLMDKY 189 (249)
Q Consensus 159 G~I~~~el~~~l~~~------------------g~~l~~~~~~~l~~~~ 189 (249)
..++..|+..+.+-. ...+++++++..+...
T Consensus 173 ~~~~~~e~~~~~~~~~q~r~v~~~~i~~~~~~~~v~vsd~ei~~yy~~~ 221 (623)
T PRK10788 173 DFMLPGETDELAALVAQQRVVREATIDVNALAAKQTVTDEEIKSYYDQN 221 (623)
T ss_pred CCCCHHHHHHHHHHhhceEEEEEEEEcHHHccCcCCCCHHHHHHHHHhC
Confidence 678888877765422 1357888888888764
No 373
>PF08349 DUF1722: Protein of unknown function (DUF1722); InterPro: IPR013560 This domain of unknown function is found in bacteria and archaea and is homologous to the hypothetical protein ybgA from Escherichia coli.
Probab=20.49 E-value=3.3e+02 Score=19.39 Aligned_cols=14 Identities=36% Similarity=0.245 Sum_probs=6.4
Q ss_pred CCcccHHHHHHHHH
Q 025714 158 SGKIDLMELRDALY 171 (249)
Q Consensus 158 ~G~I~~~el~~~l~ 171 (249)
.|.|+...+..+|+
T Consensus 83 ~g~i~l~~~l~~L~ 96 (117)
T PF08349_consen 83 EGKIPLSVPLTLLK 96 (117)
T ss_pred cCCccHHHHHHHHH
Confidence 34444444444443
No 374
>PF09312 SurA_N: SurA N-terminal domain; InterPro: IPR015391 The correct folding of outer membrane proteins in Gram negative bacteria is facilitated by the survival protein SurA []. This entry represents the domain found at the N terminus of the chaperone SurA. It is a helical domain of unknown function. The C terminus of the SurA protein folds back and forms part of this domain also but is not included in the current alignment. ; PDB: 3RGC_B 2PV3_B 1M5Y_A.
Probab=20.37 E-value=1.4e+02 Score=21.33 Aligned_cols=21 Identities=10% Similarity=0.143 Sum_probs=10.0
Q ss_pred HHcCCCCCHHHHHHHHHHhcC
Q 025714 171 YSIGYAVPPSVLQLLMDKYDN 191 (249)
Q Consensus 171 ~~~g~~l~~~~~~~l~~~~d~ 191 (249)
+..|+.+++.+++..+..+-.
T Consensus 61 k~~gI~vsd~evd~~i~~ia~ 81 (118)
T PF09312_consen 61 KRLGIKVSDEEVDEAIANIAK 81 (118)
T ss_dssp HHCT----HHHHHHHHHHHHH
T ss_pred HHcCCCCCHHHHHHHHHHHHH
Confidence 345666666666666655543
No 375
>PF03997 VPS28: VPS28 protein; InterPro: IPR007143 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ].; PDB: 2J9W_B 2J9U_C 2G3K_A 2F66_E 2F6M_D 2J9V_A 2CAZ_E 2P22_B.
Probab=20.37 E-value=2.1e+02 Score=22.62 Aligned_cols=56 Identities=14% Similarity=0.199 Sum_probs=27.0
Q ss_pred HHHHHHHHHcC---CCCCcccHHHHHHHHHHcC--CCCCHHHHHHHHHHhcCCCCCCCcccchHHHHHHH
Q 025714 145 QWRAIFERYDR---DRSGKIDLMELRDALYSIG--YAVPPSVLQLLMDKYDNRSGSRKLGLSFDSFVECG 209 (249)
Q Consensus 145 ~~~~~F~~~D~---d~~G~I~~~el~~~l~~~g--~~l~~~~~~~l~~~~d~~~~~~~g~i~~~eF~~~l 209 (249)
++.....++.. |-.|.-...++..-|..|. ..+++++++++.-.++. .|.+|...|
T Consensus 127 dL~~slnr~~~~~~dfe~r~kl~~Wl~~Ln~m~asdeL~e~q~rqllfDle~---------aY~~F~~~L 187 (188)
T PF03997_consen 127 DLMQSLNRVTDLPPDFEGRSKLVEWLIKLNGMKASDELSEEQARQLLFDLES---------AYNAFYRSL 187 (188)
T ss_dssp HHHHHHHHCTTS-TT-CCHHHHHHHHHHHHTS-TT-B--HHHHHHHHHHHHH---------HHHHHHHCH
T ss_pred HHHHHHhccCCCCCCCccHHHHHHHHHHHhCCCcccccCHHHHHHHHHHHHH---------HHHHHHHHh
Confidence 44444444443 3444433334434444443 56888888888765554 466666543
No 376
>KOG1985 consensus Vesicle coat complex COPII, subunit SEC24/subunit SFB2 [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.31 E-value=3.2e+02 Score=26.84 Aligned_cols=7 Identities=0% Similarity=0.159 Sum_probs=2.7
Q ss_pred chHHHHH
Q 025714 201 SFDSFVE 207 (249)
Q Consensus 201 ~~~eF~~ 207 (249)
..++..+
T Consensus 378 ~L~~ck~ 384 (887)
T KOG1985|consen 378 PLKECKD 384 (887)
T ss_pred eHHHHHH
Confidence 3344333
No 377
>cd06395 PB1_Map2k5 PB1 domain is essential part of the mitogen-activated protein kinase kinase 5 (Map2k5, alias MEK5) one of the key member of the signaling kinases cascade which involved in angiogenesis and early cardiovascular development. The PB1 domain of Map2k5 interacts with the PB1 domain of another members of kinase cascade MEKK2 (or MEKK3). A canonical PB1-PB1 interaction, involving heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The Map2k5 protein contains a type I PB1 domain.
Probab=20.09 E-value=79 Score=21.17 Aligned_cols=46 Identities=17% Similarity=0.203 Sum_probs=26.8
Q ss_pred ccchHHHHHHHHHH--HHHHHHhhhcCCCCCceeeecHHHHHHHHhhcc
Q 025714 199 GLSFDSFVECGMVV--KGLTEKFKEKDPRYTGSATLTYESFMSIVIPFI 245 (249)
Q Consensus 199 ~i~~~eF~~~l~~~--~~~~~~f~~~d~~~~G~i~~~~~~~~~~~~~~~ 245 (249)
.|+|.+.+..+..+ ..-..+|+.-|.+++. ||+--++=|.+++++.
T Consensus 22 ~L~F~DvL~~I~~vlp~aT~tAFeYEDE~gDR-ITVRSDeEm~AMlsyy 69 (91)
T cd06395 22 QLLFRDVLDVIGQVLPEATTTAFEYEDEDGDR-ITVRSDEEMKAMLSYY 69 (91)
T ss_pred cccHHHHHHHHHHhcccccccceeeccccCCe-eEecchHHHHHHHHHH
Confidence 46666666665544 3444567777777775 6664444455555543
Done!