BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025715
(249 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q54VA8|TRM7_DICDI Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase
OS=Dictyostelium discoideum GN=fsjA PE=3 SV=1
Length = 270
Score = 303 bits (775), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 145/225 (64%), Positives = 177/225 (78%), Gaps = 7/225 (3%)
Query: 1 MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLS 60
MGK+S+DKRDIYYRKAKEEGWRARSAFKL+QIDEE+ IFEGVKRVVDLCAAPGSWSQVLS
Sbjct: 1 MGKSSKDKRDIYYRKAKEEGWRARSAFKLIQIDEEYQIFEGVKRVVDLCAAPGSWSQVLS 60
Query: 61 RKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKA 120
R++Y K PD + IVA+DLQ MAP++GV+Q++GDIT T++ +I HFDG A
Sbjct: 61 RRIYGDGK-DPDVK------IVAVDLQEMAPLKGVVQIKGDITKYETSKQIISHFDGSLA 113
Query: 121 DLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQL 180
DL++ DGAPDVTGLHD+D + QSQLIL+ L + TH LK GG F+AK+F+G D SL+Y Q+
Sbjct: 114 DLIISDGAPDVTGLHDIDFYGQSQLILSALNITTHTLKIGGTFVAKMFKGDDMSLMYSQM 173
Query: 181 KLFFPVVTFAKPKSSRNSSIEAFAVCENYFPPEGFNPKDLHRLLE 225
KLFF V+F KP SSR SS+E F +C NY PP +NPK + LE
Sbjct: 174 KLFFEHVSFVKPSSSRESSLENFILCRNYQPPLNYNPKIIDPALE 218
>sp|Q9UET6|TRM7_HUMAN Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase
OS=Homo sapiens GN=FTSJ1 PE=1 SV=2
Length = 329
Score = 299 bits (765), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 146/230 (63%), Positives = 178/230 (77%), Gaps = 10/230 (4%)
Query: 1 MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLS 60
MG+ S+DKRD+YYR AKE GWRARSAFKLLQ+D+EF +F+GV R VDLCAAPGSWSQVLS
Sbjct: 1 MGRTSKDKRDVYYRLAKENGWRARSAFKLLQLDKEFQLFQGVTRAVDLCAAPGSWSQVLS 60
Query: 61 RKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKA 120
+K+ +G +VA+DLQ MAP+ GV+Q+QGDIT TA+ +I+HF GC A
Sbjct: 61 QKI---------GGQGS-GHVVAVDLQAMAPLPGVVQIQGDITQLSTAKEIIQHFKGCPA 110
Query: 121 DLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQL 180
DLVVCDGAPDVTGLHD+DE++Q+QL+LA L + THVLK GG F+AKIFRG+D +LLY QL
Sbjct: 111 DLVVCDGAPDVTGLHDVDEYMQAQLLLAALNIATHVLKPGGCFVAKIFRGRDVTLLYSQL 170
Query: 181 KLFFPVVTFAKPKSSRNSSIEAFAVCENYFPPEGFNPKDLHRLLEKVGSP 230
++FF V AKP+SSRNSSIEAFAVC+ Y PPEGF P LL+ P
Sbjct: 171 QVFFSSVLCAKPRSSRNSSIEAFAVCQGYDPPEGFIPDLSKPLLDHSYDP 220
>sp|Q22031|TRM7_CAEEL Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase
OS=Caenorhabditis elegans GN=R74.7 PE=3 SV=3
Length = 337
Score = 296 bits (759), Expect = 7e-80, Method: Compositional matrix adjust.
Identities = 141/217 (64%), Positives = 169/217 (77%), Gaps = 9/217 (4%)
Query: 1 MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLS 60
MGK SRDKRDIYYR AKE WRARSAFKL+QID+EF I +GV+R VDLCAAPGSWSQVLS
Sbjct: 1 MGKTSRDKRDIYYRLAKENKWRARSAFKLMQIDDEFQILKGVRRAVDLCAAPGSWSQVLS 60
Query: 61 RKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKA 120
++LY E IVAIDLQPMAPI GVIQ+QGDIT+ TA VI+HF G K+
Sbjct: 61 KRLY---------EEDQEAKIVAIDLQPMAPIPGVIQLQGDITSVDTANQVIKHFSGEKS 111
Query: 121 DLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQL 180
D+V+CDGAPDVTG+H +DEF+Q++LILA + +HVLKEGG F+AKIFR +++SLLY Q+
Sbjct: 112 DIVICDGAPDVTGIHSLDEFMQAELILAAFNITSHVLKEGGNFLAKIFRSRNSSLLYAQM 171
Query: 181 KLFFPVVTFAKPKSSRNSSIEAFAVCENYFPPEGFNP 217
K +F V AKP+SSR SS EAF +C +Y PPEGF P
Sbjct: 172 KKYFKKVYLAKPRSSRQSSCEAFVLCLDYSPPEGFVP 208
>sp|O36015|TRM7_SCHPO Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAC4F10.03c PE=3 SV=1
Length = 285
Score = 286 bits (731), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 137/217 (63%), Positives = 170/217 (78%), Gaps = 2/217 (0%)
Query: 1 MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLS 60
MG++S+DKRD YYR AKE+GWRARSAFKLLQ++E+FN+FEG KRVVDLCAAPGSWSQVLS
Sbjct: 1 MGRSSKDKRDAYYRLAKEQGWRARSAFKLLQLNEQFNLFEGAKRVVDLCAAPGSWSQVLS 60
Query: 61 RKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKA 120
R+L S + E P+IVA+DLQPMAPI+GV +Q DIT+ T +++ HF A
Sbjct: 61 RELLKNIDTSIAADEK--PMIVAVDLQPMAPIDGVCTLQLDITHPNTLSIILSHFGNEPA 118
Query: 121 DLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQL 180
DLVV DGAPDVTGLHD+DE++Q+Q++LA + VLK GGKF+AKIFRG+D SLLY QL
Sbjct: 119 DLVVSDGAPDVTGLHDLDEYIQAQILLAAFNLAVCVLKPGGKFVAKIFRGRDVSLLYSQL 178
Query: 181 KLFFPVVTFAKPKSSRNSSIEAFAVCENYFPPEGFNP 217
+L F V+ AKP+SSR SSIE+F VCE++ PP F P
Sbjct: 179 RLMFRKVSCAKPRSSRASSIESFVVCEDFNPPSNFQP 215
>sp|Q9VEP1|TRM71_DROME Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase 1
OS=Drosophila melanogaster GN=CG5220 PE=2 SV=1
Length = 302
Score = 274 bits (700), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 138/237 (58%), Positives = 171/237 (72%), Gaps = 11/237 (4%)
Query: 1 MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLS 60
MGK S+DKRDIYYR+AK+EGWRARSAFKLL +DE + I GV+R VDLCAAPGSWSQVLS
Sbjct: 1 MGKTSKDKRDIYYRQAKDEGWRARSAFKLLHVDEAYGILNGVQRAVDLCAAPGSWSQVLS 60
Query: 61 RKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGC-K 119
RKLY + E I+A+DLQ MAPI G++Q+QGDIT TAE +I HF G K
Sbjct: 61 RKLYDTCETDD---EKSAVKIIAVDLQAMAPIRGILQLQGDITKQSTAEAIIGHFGGNEK 117
Query: 120 ADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQ 179
A LVVCDGAPDVTG+H+MDE++Q QL++A L++ T VL+ GG F+AKIF+G TSLL Q
Sbjct: 118 AQLVVCDGAPDVTGVHEMDEYMQHQLLVAALSIATCVLETGGTFVAKIFKGNATSLLSSQ 177
Query: 180 LKLFFPVVTFAKPKSSRNSSIEAFAVCENYFPPEGFNPK-------DLHRLLEKVGS 229
+++FF KP SSR SSIEAF VC ++ PEG+ P+ D+ L +K GS
Sbjct: 178 MQIFFKKFDIYKPPSSRPSSIEAFVVCSDFCLPEGYIPQVINPARDDIRLLAQKTGS 234
>sp|Q9VDD9|TRM72_DROME Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase 2
OS=Drosophila melanogaster GN=CG7009 PE=3 SV=1
Length = 320
Score = 259 bits (663), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 129/233 (55%), Positives = 163/233 (69%), Gaps = 4/233 (1%)
Query: 1 MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLS 60
MG+ S+DKRDI+YR AKE+GWRARSAFKLLQ DE F + EG+ R VDLCAAPGSWSQVL+
Sbjct: 1 MGRTSKDKRDIFYRLAKEQGWRARSAFKLLQADETFQLLEGLTRAVDLCAAPGSWSQVLA 60
Query: 61 RKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKA 120
++LY P L P+ RE I+A+DLQ MAPIEGV Q++ DI+ TAE +I F G KA
Sbjct: 61 KRLYEP--LPPEEREK--VKIIAVDLQGMAPIEGVKQLRADISKESTAEAIIEFFGGEKA 116
Query: 121 DLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQL 180
+VV DGAPD TG+HD D +VQ +L+L+ L++ T +L+EGG F++KI+R TS LY QL
Sbjct: 117 QIVVSDGAPDSTGMHDFDSYVQGELLLSALSISTFILEEGGSFVSKIYRADRTSRLYTQL 176
Query: 181 KLFFPVVTFAKPKSSRNSSIEAFAVCENYFPPEGFNPKDLHRLLEKVGSPWGG 233
K FF V KP +SRNSSIEAF V + P+G+ P +L W G
Sbjct: 177 KRFFKNVCVFKPSASRNSSIEAFVVAREFCLPDGYKPCNLTTEWHDQPESWVG 229
>sp|P38238|TRM7_YEAST tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=TRM7 PE=1 SV=1
Length = 310
Score = 253 bits (645), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 125/220 (56%), Positives = 163/220 (74%), Gaps = 6/220 (2%)
Query: 1 MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFE--GVKRVVDLCAAPGSWSQV 58
MGK+S+DKRD+YYRKAKE+G+RARSAFKLLQ++++F+ + +KRVVDLCAAPGSWSQV
Sbjct: 1 MGKSSKDKRDLYYRKAKEQGYRARSAFKLLQLNDQFHFLDDPNLKRVVDLCAAPGSWSQV 60
Query: 59 LSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGC 118
LSRKL+ SP S + D IV++DLQPM+PI V +Q DIT+ +T +++ F
Sbjct: 61 LSRKLF---DESPSSDKEDRK-IVSVDLQPMSPIPHVTTLQADITHPKTLARILKLFGNE 116
Query: 119 KADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYC 178
KAD V DGAPDVTGLHD+DE+VQ QLI++ L + +LK+GG F+AKIFRG+D +LY
Sbjct: 117 KADFVCSDGAPDVTGLHDLDEYVQQQLIMSALQLTACILKKGGTFVAKIFRGRDIDMLYS 176
Query: 179 QLKLFFPVVTFAKPKSSRNSSIEAFAVCENYFPPEGFNPK 218
QL F + AKP+SSR +S+EAF VC Y PP + PK
Sbjct: 177 QLGYLFDKIVCAKPRSSRGTSLEAFIVCLGYNPPSNWTPK 216
>sp|Q5BH88|SPB1_EMENI AdoMet-dependent rRNA methyltransferase spb1 OS=Emericella nidulans
(strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 /
M139) GN=spb1 PE=3 SV=1
Length = 806
Score = 162 bits (411), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 90/209 (43%), Positives = 120/209 (57%), Gaps = 12/209 (5%)
Query: 10 DIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKL 69
D +YR AKE+G+RAR+AFKL+Q+++++ E K ++DLCAAPGSW QV + +PA+
Sbjct: 13 DKWYRLAKEKGYRARAAFKLVQLNKKYGFLEKSKVLLDLCAAPGSWCQVAAE--CMPAQ- 69
Query: 70 SPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAP 129
LIV +DL P+ PI VI Q DIT + + H KAD V+ DGAP
Sbjct: 70 ---------SLIVGVDLAPIKPIPRVITFQQDITTEKCRATIRSHLKHWKADTVLHDGAP 120
Query: 130 DVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTF 189
+V D F Q++L+L L + T L EGG F+ K+FR KD + L K F V
Sbjct: 121 NVGTAWVQDAFSQAELVLESLKLATEFLVEGGTFVTKVFRSKDYNPLLWVFKQLFMSVEA 180
Query: 190 AKPKSSRNSSIEAFAVCENYFPPEGFNPK 218
KP SSRN S E F VC Y P+ +PK
Sbjct: 181 TKPPSSRNVSAEIFVVCRGYKAPKRIDPK 209
>sp|Q4WVH3|SPB1_ASPFU AdoMet-dependent rRNA methyltransferase spb1 OS=Neosartorya
fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 /
FGSC A1100) GN=spb1 PE=3 SV=1
Length = 795
Score = 160 bits (404), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 85/209 (40%), Positives = 120/209 (57%), Gaps = 12/209 (5%)
Query: 10 DIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKL 69
D +YR AKE+G+RAR+AFKL+Q+++++ E K ++DLCAAPGSW QV + +P +
Sbjct: 13 DKWYRLAKEKGYRARAAFKLIQLNKKYGFLEKSKVLLDLCAAPGSWCQVAAE--CMPTQ- 69
Query: 70 SPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAP 129
+I+ +DL P+ PI VI Q DIT + + +H KAD V+ DGAP
Sbjct: 70 ---------SIIIGVDLAPIKPIPRVITFQSDITTEKCRATIRQHLKHWKADTVLHDGAP 120
Query: 130 DVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTF 189
+V D F Q++L+L + + T L EGG F+ K+FR KD + L K F V
Sbjct: 121 NVGTAWVQDAFSQAELVLQSMKLATEFLVEGGTFVTKVFRSKDYNPLLWVFKQLFTSVEA 180
Query: 190 AKPKSSRNSSIEAFAVCENYFPPEGFNPK 218
KP SSRN S E F VC + P+ +PK
Sbjct: 181 TKPPSSRNVSAEIFVVCRGFKAPKRIDPK 209
>sp|Q52C47|SPB1_MAGO7 AdoMet-dependent rRNA methyltransferase SPB1 OS=Magnaporthe oryzae
(strain 70-15 / ATCC MYA-4617 / FGSC 8958) GN=SPB1 PE=3
SV=2
Length = 865
Score = 158 bits (399), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 86/209 (41%), Positives = 119/209 (56%), Gaps = 12/209 (5%)
Query: 10 DIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKL 69
D +Y+ AKE+G+RAR+AFKL+Q+++++ E K ++DLCAAPGSW QV A++
Sbjct: 13 DKWYKLAKEKGYRARAAFKLIQLNKKYGFLEKSKVLLDLCAAPGSWCQV-------AAEV 65
Query: 70 SPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAP 129
P S LIV +DL P+ PI VI Q DIT + + +H KAD V+ DGAP
Sbjct: 66 MPVS-----SLIVGVDLAPIKPIPKVITFQSDITTEKCRATIRQHLKTWKADTVLHDGAP 120
Query: 130 DVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTF 189
+V D F Q++L L + + T L EGG F+ K+FR KD + + F V
Sbjct: 121 NVGTAWVQDSFNQAELTLQAMKLATEFLVEGGTFVTKVFRSKDYNSMLWVFNQLFKKVEA 180
Query: 190 AKPKSSRNSSIEAFAVCENYFPPEGFNPK 218
KP SSRN S E F VC + P+ +PK
Sbjct: 181 TKPPSSRNVSAEIFVVCRGFKAPKRIDPK 209
>sp|Q9P6V8|SPB1_NEUCR AdoMet-dependent rRNA methyltransferase spb1 OS=Neurospora crassa
(strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257
/ FGSC 987) GN=spb1 PE=3 SV=2
Length = 831
Score = 155 bits (393), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 86/223 (38%), Positives = 121/223 (54%), Gaps = 14/223 (6%)
Query: 10 DIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKL 69
D +Y+ AKE+G+RAR+AFKL+Q+++++ E K +DLCAAPGSW QV + + +
Sbjct: 13 DKWYKLAKEKGYRARAAFKLIQLNKKYGFLEKSKVALDLCAAPGSWCQVCAETMPTNS-- 70
Query: 70 SPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAP 129
+I+ +DL P+ PI VI Q DIT + + H KAD+V+ DGAP
Sbjct: 71 ----------IIIGVDLAPIKPIPKVITFQSDITTEKCRATIRSHLKTWKADVVLHDGAP 120
Query: 130 DVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTF 189
+V D + Q++L L L + T L EGG F+ K+FR KD + L F V
Sbjct: 121 NVGTAWVQDSYNQAELALHSLKLATEFLIEGGTFVTKVFRSKDYNSLLWVCNQLFAKVEA 180
Query: 190 AKPKSSRNSSIEAFAVCENYFPPEGFNPK--DLHRLLEKVGSP 230
KP SSRN S E F VC + P+ +PK D + E V P
Sbjct: 181 TKPPSSRNVSAEIFVVCRGFKAPKRIDPKLLDPRSVFEDVAGP 223
>sp|Q6C9Q1|SPB1_YARLI AdoMet-dependent rRNA methyltransferase SPB1 OS=Yarrowia lipolytica
(strain CLIB 122 / E 150) GN=SPB1 PE=3 SV=1
Length = 850
Score = 155 bits (391), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 88/217 (40%), Positives = 124/217 (57%), Gaps = 13/217 (5%)
Query: 3 KASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIF-EGVKRVVDLCAAPGSWSQVLSR 61
K + + D YYR AKE+G+RARS+FK++QI++++ F E K V+DLCAAPGSW QV S+
Sbjct: 7 KHGKGRLDHYYRLAKEKGYRARSSFKIIQINQKYGKFLEKSKVVIDLCAAPGSWCQVASQ 66
Query: 62 KLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKAD 121
L P + LI+ D+ P+ P+ VI Q DIT + + ++ KAD
Sbjct: 67 -------LCPVN-----SLIIGCDIVPIKPLPNVITFQSDITTDHCRQQLRQYMKTWKAD 114
Query: 122 LVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLK 181
V+ DGAP+V D F QS+L+L L + L +GG F+ K+FR KD + L +
Sbjct: 115 TVMHDGAPNVGMAWAQDAFTQSELVLQSLKLAVEFLNKGGTFVTKVFRSKDYNNLMWVFQ 174
Query: 182 LFFPVVTFAKPKSSRNSSIEAFAVCENYFPPEGFNPK 218
FF V KP SSRN S E F VC + P+ +P+
Sbjct: 175 QFFEKVEATKPPSSRNVSAEIFVVCLKFKAPKKIDPR 211
>sp|Q59KF3|SPB1_CANAL AdoMet-dependent rRNA methyltransferase SPB1 OS=Candida albicans
(strain SC5314 / ATCC MYA-2876) GN=SPB1 PE=3 SV=1
Length = 845
Score = 154 bits (389), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 99/250 (39%), Positives = 135/250 (54%), Gaps = 20/250 (8%)
Query: 3 KASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIF-EGVKRVVDLCAAPGSWSQVLSR 61
K S+ + D YY AKE+G+RARS+FK++QI+E++ F E K V+DLCAAPGSW QV S+
Sbjct: 7 KHSKGRLDRYYYLAKEKGYRARSSFKIIQINEKYGHFLEKSKVVIDLCAAPGSWCQVASQ 66
Query: 62 KLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKAD 121
L P + LI+ +D+ P+ P+ VI Q DIT + H KAD
Sbjct: 67 -------LCPIN-----SLIIGVDIVPIKPLPNVITFQSDITTEDCRSRLRGHMKTWKAD 114
Query: 122 LVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLK 181
V+ DGAP+V D F QSQL L L + L GG F+ KIFR +D + L +
Sbjct: 115 TVLHDGAPNVGLGWVQDAFTQSQLTLQALKLAVENLTAGGTFVTKIFRSRDYNNLMWVFQ 174
Query: 182 LFFPVVTFAKPKSSRNSSIEAFAVCENYFPPEGFNPK--DLHRLLEKVGSPWGGEDQGQC 239
F V KP +SRN S E F VC+ + P+ +P+ D + E++G GG + Q
Sbjct: 175 QLFEKVEATKPPASRNVSAEIFVVCKGFKAPKKLDPRLLDPKEVFEELG---GGNESKQ- 230
Query: 240 ACNIHYIFMP 249
N IF P
Sbjct: 231 -NNEAKIFNP 239
>sp|Q5ZKM1|SPB1_CHICK pre-rRNA processing protein FTSJ3 OS=Gallus gallus GN=FTSJ3 PE=2
SV=2
Length = 832
Score = 152 bits (385), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 83/221 (37%), Positives = 123/221 (55%), Gaps = 15/221 (6%)
Query: 1 MGKASR---DKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQ 57
MGK S+ +RD +Y AKE G+R+RSAFKLLQ++ +F + + ++DLCAAPG W Q
Sbjct: 1 MGKKSKVGKSRRDKFYHLAKETGFRSRSAFKLLQLNRKFQFLQKARALLDLCAAPGGWLQ 60
Query: 58 VLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDG 117
V S+ ++P L++ +DL P+ PI V+ +Q DIT + + + +
Sbjct: 61 VASK--FMPVS----------SLVIGVDLVPIKPIPNVVTLQEDITTEKCRQALRKELQT 108
Query: 118 CKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLY 177
K D+V+ DGAP+V D + Q+ L L L + L +GG FI K+FR +D L
Sbjct: 109 WKVDVVLNDGAPNVGASWVHDAYSQANLTLMALKLACEFLCKGGWFITKVFRSRDYQPLL 168
Query: 178 CQLKLFFPVVTFAKPKSSRNSSIEAFAVCENYFPPEGFNPK 218
+ FF V KP++SRN S E F VC+ Y P+ + K
Sbjct: 169 WIFQQFFHKVQATKPQASRNESAEIFVVCQGYQAPDKIDSK 209
>sp|P0CS78|SPB1_CRYNJ AdoMet-dependent rRNA methyltransferase SPB1 OS=Cryptococcus
neoformans var. neoformans serotype D (strain JEC21 /
ATCC MYA-565) GN=SPB1 PE=3 SV=1
Length = 908
Score = 152 bits (384), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 80/216 (37%), Positives = 118/216 (54%), Gaps = 12/216 (5%)
Query: 3 KASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRK 62
K + + D +YR AKE+G+RARSAFKL+ ++ ++++ + +DLCAAPG W QV +
Sbjct: 7 KTGKGRLDKFYRLAKEQGYRARSAFKLVHLNRKYDLLSKARCCIDLCAAPGGWLQVAEK- 65
Query: 63 LYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADL 122
Y+P LI+ +DL + P+ V DIT + + +H KADL
Sbjct: 66 -YMPKG----------SLIIGVDLNAIKPLPHVTTFVADITTPHCRQTLRQHMHDWKADL 114
Query: 123 VVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKL 182
V+ DGAP+V D F Q++L+L L + T L +GG F+ K+FR +D + L
Sbjct: 115 VLHDGAPNVGSAWVQDAFTQNELVLQSLKLATEFLAKGGSFVTKVFRSQDYNSLLWVFGQ 174
Query: 183 FFPVVTFAKPKSSRNSSIEAFAVCENYFPPEGFNPK 218
F V KP SSRN S E F VC ++ P+ +PK
Sbjct: 175 LFKSVEATKPPSSRNVSAEIFVVCRDFIAPKHIDPK 210
>sp|P0CS79|SPB1_CRYNB AdoMet-dependent rRNA methyltransferase SPB1 OS=Cryptococcus
neoformans var. neoformans serotype D (strain B-3501A)
GN=SPB1 PE=3 SV=1
Length = 908
Score = 152 bits (384), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 80/216 (37%), Positives = 118/216 (54%), Gaps = 12/216 (5%)
Query: 3 KASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRK 62
K + + D +YR AKE+G+RARSAFKL+ ++ ++++ + +DLCAAPG W QV +
Sbjct: 7 KTGKGRLDKFYRLAKEQGYRARSAFKLVHLNRKYDLLSKARCCIDLCAAPGGWLQVAEK- 65
Query: 63 LYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADL 122
Y+P LI+ +DL + P+ V DIT + + +H KADL
Sbjct: 66 -YMPKG----------SLIIGVDLNAIKPLPHVTTFVADITTPHCRQTLRQHMHDWKADL 114
Query: 123 VVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKL 182
V+ DGAP+V D F Q++L+L L + T L +GG F+ K+FR +D + L
Sbjct: 115 VLHDGAPNVGSAWVQDAFTQNELVLQSLKLATEFLAKGGSFVTKVFRSQDYNSLLWVFGQ 174
Query: 183 FFPVVTFAKPKSSRNSSIEAFAVCENYFPPEGFNPK 218
F V KP SSRN S E F VC ++ P+ +PK
Sbjct: 175 LFKSVEATKPPSSRNVSAEIFVVCRDFIAPKHIDPK 210
>sp|Q8IY81|SPB1_HUMAN pre-rRNA processing protein FTSJ3 OS=Homo sapiens GN=FTSJ3 PE=1
SV=2
Length = 847
Score = 151 bits (381), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 81/217 (37%), Positives = 117/217 (53%), Gaps = 12/217 (5%)
Query: 2 GKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSR 61
GK + +RD +Y AKE G+R+RSAFKL+Q++ F + + ++DLCAAPG W QV
Sbjct: 5 GKVGKSRRDKFYHLAKETGYRSRSAFKLIQLNRRFQFLQKARALLDLCAAPGGWLQV--- 61
Query: 62 KLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKAD 121
AK P S LIV +DL P+ P+ V+ +Q DIT R + + + K D
Sbjct: 62 ----AAKFMPVS-----SLIVGVDLVPIKPLPNVVTLQQDITTERCRQALRKELKTWKVD 112
Query: 122 LVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLK 181
+V+ DGAP+V D + Q+ L L L + L GG FI K+FR +D L +
Sbjct: 113 VVLNDGAPNVGASWVHDAYSQAHLTLMALRLACDFLARGGSFITKVFRSRDYQPLLWIFQ 172
Query: 182 LFFPVVTFAKPKSSRNSSIEAFAVCENYFPPEGFNPK 218
F V KP++SR+ S E F VC+ + P+ + K
Sbjct: 173 QLFRRVQATKPQASRHESAEIFVVCQGFLAPDKVDSK 209
>sp|Q5RAS1|SPB1_PONAB pre-rRNA processing protein FTSJ3 OS=Pongo abelii GN=FTSJ3 PE=2
SV=1
Length = 841
Score = 151 bits (381), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 81/217 (37%), Positives = 117/217 (53%), Gaps = 12/217 (5%)
Query: 2 GKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSR 61
GK + +RD +Y AKE G+R+RSAFKL+Q++ F + + ++DLCAAPG W QV
Sbjct: 5 GKVGKSRRDKFYHLAKETGYRSRSAFKLIQLNRRFQFLQKARALLDLCAAPGGWLQV--- 61
Query: 62 KLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKAD 121
AK P S LIV +DL P+ P+ V+ +Q DIT R + + + K D
Sbjct: 62 ----AAKFMPVS-----SLIVGVDLVPIKPLPNVVTLQEDITTERCRQALRKELKTWKVD 112
Query: 122 LVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLK 181
+V+ DGAP+V D + Q+ L L L + L GG FI K+FR +D L +
Sbjct: 113 VVLNDGAPNVGASWVHDAYSQAHLTLMALRLACDFLARGGSFITKVFRSRDYQPLLWIFQ 172
Query: 182 LFFPVVTFAKPKSSRNSSIEAFAVCENYFPPEGFNPK 218
F V KP++SR+ S E F VC+ + P+ + K
Sbjct: 173 QLFRRVQATKPQASRHESAEIFVVCQGFLAPDKVDSK 209
>sp|Q4P6G5|SPB1_USTMA AdoMet-dependent rRNA methyltransferase SPB1 OS=Ustilago maydis
(strain 521 / FGSC 9021) GN=SPB1 PE=3 SV=1
Length = 921
Score = 150 bits (378), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 91/239 (38%), Positives = 128/239 (53%), Gaps = 13/239 (5%)
Query: 3 KASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRK 62
K ++ + D +Y AKE+G+R+R+AFKL+Q++++FN E + +DLCAAPG W QV S+
Sbjct: 8 KTAKGRLDKFYWLAKEQGYRSRAAFKLVQLNKKFNFLEKARCCIDLCAAPGGWLQVASK- 66
Query: 63 LYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADL 122
++PA LIV +DL P+ PI I DI + + + + + KAD+
Sbjct: 67 -FMPAN----------SLIVGVDLVPIKPIPRTITFAEDINSYKCRDQLRQILKDWKADI 115
Query: 123 VVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKL 182
V+ DGAP+V D + QS+L L L + L GG F+ K+FR KD + L
Sbjct: 116 VIHDGAPNVGTAWVQDAYAQSELTLQSLRLAVEFLTAGGTFVTKVFRSKDYNNLLWVFNQ 175
Query: 183 FFPVVTFAKPKSSRNSSIEAFAVCENYFPPEGFNPKDLH-RLLEKVGSPWGGEDQGQCA 240
F V KP SSRN S E F VC+ Y P +PK L R + K P DQ Q A
Sbjct: 176 LFKKVEATKPSSSRNVSAEIFVVCQGYKNPARIDPKFLDPRHVFKELDPASLADQDQEA 234
>sp|Q5RJT2|SPB1_RAT pre-rRNA processing protein FTSJ3 OS=Rattus norvegicus GN=Ftsj3
PE=2 SV=1
Length = 829
Score = 149 bits (376), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 81/217 (37%), Positives = 117/217 (53%), Gaps = 12/217 (5%)
Query: 2 GKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSR 61
GK + +RD +Y AKE G+R+RSAFKL+Q++ F + + ++DLCAAPG W QV
Sbjct: 5 GKVGKSRRDKFYHLAKETGYRSRSAFKLIQLNRRFQFLQKARALLDLCAAPGGWLQV--- 61
Query: 62 KLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKAD 121
AK P S LIV +DL P+ P+ V+ +Q DIT R + + + K D
Sbjct: 62 ----AAKFMPVS-----SLIVGVDLVPIKPLPNVVTLQEDITTERCRQALRKELKTWKVD 112
Query: 122 LVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLK 181
+V+ DGAP+V D + Q+ L L L + L GG FI K+FR +D L +
Sbjct: 113 VVLNDGAPNVGASWVHDAYSQAHLTLMALRLACDFLARGGCFITKVFRSRDYQPLLWIFQ 172
Query: 182 LFFPVVTFAKPKSSRNSSIEAFAVCENYFPPEGFNPK 218
F V KP++SR+ S E F VC+ + P+ + K
Sbjct: 173 QLFHRVQATKPQASRHESAEIFVVCQGFLAPDKVDAK 209
>sp|Q9DBE9|SPB1_MOUSE pre-rRNA processing protein FTSJ3 OS=Mus musculus GN=Ftsj3 PE=1
SV=1
Length = 838
Score = 149 bits (375), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 81/217 (37%), Positives = 117/217 (53%), Gaps = 12/217 (5%)
Query: 2 GKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSR 61
GK + +RD +Y AKE G+R+RSAFKL+Q++ F + + ++DLCAAPG W QV
Sbjct: 5 GKVGKSRRDKFYHLAKETGYRSRSAFKLIQLNRRFQFLQKARALLDLCAAPGGWLQV--- 61
Query: 62 KLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKAD 121
AK P S LIV +DL P+ P+ V+ +Q DIT R + + + K D
Sbjct: 62 ----AAKFMPVS-----SLIVGVDLVPIKPLPNVVTLQEDITTERCRQALRKELKTWKVD 112
Query: 122 LVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLK 181
+V+ DGAP+V D + Q+ L L L + L GG FI K+FR +D L +
Sbjct: 113 VVLNDGAPNVGASWVHDAYSQAHLTLMALRLACDFLARGGCFITKVFRSRDYQPLLWIFQ 172
Query: 182 LFFPVVTFAKPKSSRNSSIEAFAVCENYFPPEGFNPK 218
F V KP++SR+ S E F VC+ + P+ + K
Sbjct: 173 QLFHRVQATKPQASRHESAEIFVVCQGFLAPDKVDAK 209
>sp|Q751U1|SPB1_ASHGO AdoMet-dependent rRNA methyltransferase SPB1 OS=Ashbya gossypii
(strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL
Y-1056) GN=SPB1 PE=3 SV=2
Length = 830
Score = 148 bits (374), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 90/217 (41%), Positives = 119/217 (54%), Gaps = 13/217 (5%)
Query: 3 KASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIF-EGVKRVVDLCAAPGSWSQVLSR 61
K S+ + D YY AKE+G+RARS+FK++QI+E+F F E K V+DLCAAPGSW QV S
Sbjct: 7 KNSKGRLDRYYYLAKEKGYRARSSFKIIQINEKFGHFLEKSKVVIDLCAAPGSWCQVASN 66
Query: 62 KLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKAD 121
L P + LI+ +D+ PM P+ VI Q DIT + + KAD
Sbjct: 67 -------LCPVN-----SLIIGVDIVPMQPMPNVITFQSDITTEDCRSKLRGYMKTWKAD 114
Query: 122 LVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLK 181
V+ DGAP+V D F QS L L L + L GG F+ KIFR KD + L +
Sbjct: 115 TVLHDGAPNVGLNWVQDAFTQSHLTLQALKLAVENLVVGGTFVTKIFRSKDYNKLMWVFQ 174
Query: 182 LFFPVVTFAKPKSSRNSSIEAFAVCENYFPPEGFNPK 218
F V KP +SRN S E F VC+ + P+ +P+
Sbjct: 175 QLFDKVEATKPPASRNVSAEIFVVCKGFKAPKKLDPR 211
>sp|Q6FX63|SPB1_CANGA AdoMet-dependent rRNA methyltransferase SPB1 OS=Candida glabrata
(strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 /
NRRL Y-65) GN=SPB1 PE=3 SV=1
Length = 837
Score = 148 bits (374), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 90/217 (41%), Positives = 119/217 (54%), Gaps = 13/217 (5%)
Query: 3 KASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIF-EGVKRVVDLCAAPGSWSQVLSR 61
K S+ + D YY AKE+G+RARS+FK++QI+E+F F E K V+DLCAAPGSW QV S
Sbjct: 7 KNSKGRLDRYYYLAKEKGYRARSSFKIIQINEKFGHFLEKSKVVIDLCAAPGSWCQVAS- 65
Query: 62 KLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKAD 121
KL P + LI+ +D+ PM P+ VI Q DIT + + KAD
Sbjct: 66 ------KLCPVN-----SLIIGVDIVPMKPMPNVITFQSDITTEDCRSRLRGYMKTWKAD 114
Query: 122 LVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLK 181
V+ DGAP+V D F QS L L L + L G F+ KIFR KD + L +
Sbjct: 115 TVLHDGAPNVGLGWAQDAFTQSHLTLQALKLAVENLVVNGTFVTKIFRSKDYNKLIWVFQ 174
Query: 182 LFFPVVTFAKPKSSRNSSIEAFAVCENYFPPEGFNPK 218
F V KP +SRN S E F VC+ + P+ +P+
Sbjct: 175 QLFEKVEATKPPASRNVSAEIFVVCKGFKAPKKLDPR 211
>sp|P25582|SPB1_YEAST 27S pre-rRNA (guanosine(2922)-2'-O)-methyltransferase
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=SPB1 PE=1 SV=2
Length = 841
Score = 148 bits (373), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 90/217 (41%), Positives = 120/217 (55%), Gaps = 13/217 (5%)
Query: 3 KASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIF-EGVKRVVDLCAAPGSWSQVLSR 61
K S+ + D YY AKE+G+RARS+FK++QI+E++ F E K V+DLCAAPGSW QV S
Sbjct: 7 KNSKGRLDRYYYLAKEKGYRARSSFKIIQINEKYGHFLEKSKVVIDLCAAPGSWCQVAS- 65
Query: 62 KLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKAD 121
KL P + LI+ +D+ PM P+ VI Q DIT + + KAD
Sbjct: 66 ------KLCPVN-----SLIIGVDIVPMKPMPNVITFQSDITTEDCRSKLRGYMKTWKAD 114
Query: 122 LVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLK 181
V+ DGAP+V D F QSQL L L + L G F+ KIFR KD + L +
Sbjct: 115 TVLHDGAPNVGLGWVQDAFTQSQLTLQALKLAVENLVVNGTFVTKIFRSKDYNKLIWVFQ 174
Query: 182 LFFPVVTFAKPKSSRNSSIEAFAVCENYFPPEGFNPK 218
F V KP +SRN S E F VC+ + P+ +P+
Sbjct: 175 QLFEKVEATKPPASRNVSAEIFVVCKGFKAPKRLDPR 211
>sp|Q6CV12|SPB1_KLULA AdoMet-dependent rRNA methyltransferase SPB1 OS=Kluyveromyces
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC
1267 / NRRL Y-1140 / WM37) GN=SPB1 PE=3 SV=1
Length = 833
Score = 148 bits (373), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 89/217 (41%), Positives = 119/217 (54%), Gaps = 13/217 (5%)
Query: 3 KASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIF-EGVKRVVDLCAAPGSWSQVLSR 61
K S+ + D YY AKE+G+RARS+FK++QI+E++ F E K V+DLCAAPGSW QV S
Sbjct: 8 KNSKGRLDKYYYLAKEKGYRARSSFKIIQINEKYGHFLEKSKVVIDLCAAPGSWCQVASN 67
Query: 62 KLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKAD 121
L P + LI+ +D+ PM + VI Q DIT + + KAD
Sbjct: 68 -------LCPVN-----SLIIGVDIVPMKTMPNVITFQSDITTEDCRSKLRGYMKTWKAD 115
Query: 122 LVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLK 181
V+ DGAP+V D F QS L L L + L GG F+ KIFR KD + L +
Sbjct: 116 TVLHDGAPNVGLSWAQDAFTQSHLTLQALKLAVENLVVGGTFVTKIFRSKDYNKLIWVFQ 175
Query: 182 LFFPVVTFAKPKSSRNSSIEAFAVCENYFPPEGFNPK 218
F V KP +SRN S E F VC+N+ P+ +P+
Sbjct: 176 QLFEKVEATKPPASRNVSAEIFVVCKNFKAPKKLDPR 212
>sp|O42832|SPB1_SCHPO AdoMet-dependent rRNA methyltransferase spb1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=spb1 PE=1 SV=2
Length = 802
Score = 145 bits (367), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 84/230 (36%), Positives = 126/230 (54%), Gaps = 14/230 (6%)
Query: 3 KASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRK 62
K ++ + D +Y+ AKE+G+R+R+AFKL+Q++++++ E K ++DLCAAPG W QV S+
Sbjct: 7 KTAKGRLDKWYKLAKEQGYRSRAAFKLVQLNQKYSFLEKAKVIIDLCAAPGGWLQVASKT 66
Query: 63 LYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADL 122
P S LIV +DL P+ PI DIT+ + + + KAD+
Sbjct: 67 C------KPGS------LIVGVDLAPIKPIPNCHTFVEDITSDKCRSQLRGYLKTWKADV 114
Query: 123 VVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKL 182
V+ DGAP+V D + Q+QL+L + + L GG F+ K+FR +D + L K
Sbjct: 115 VLHDGAPNVGSAWLQDAYGQAQLVLMSMKLACEFLVAGGTFVTKVFRSRDYNNLLWVFKQ 174
Query: 183 FFPVVTFAKPKSSRNSSIEAFAVCENYFPPEGFNPK--DLHRLLEKVGSP 230
F V KP SSRN S E F VC Y P+ +P+ D + E+V P
Sbjct: 175 LFNKVEATKPPSSRNVSAEIFVVCRGYKAPKKLDPRFTDPRTVFEEVQEP 224
>sp|Q6BNQ8|SPB1_DEBHA AdoMet-dependent rRNA methyltransferase SPB1 OS=Debaryomyces
hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC
0083 / IGC 2968) GN=SPB1 PE=3 SV=2
Length = 831
Score = 145 bits (366), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 87/217 (40%), Positives = 118/217 (54%), Gaps = 13/217 (5%)
Query: 3 KASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIF-EGVKRVVDLCAAPGSWSQVLSR 61
K S+ + D YY AKE+G+RARS+FK++QI+E++ F E K V+DLCAAPGSW QV S+
Sbjct: 7 KNSKGRLDRYYYLAKEKGYRARSSFKIIQINEKYGHFLEKSKVVIDLCAAPGSWCQVASQ 66
Query: 62 KLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKAD 121
L P + LI+ +D+ P+ + I Q DIT + H KAD
Sbjct: 67 -------LCPIN-----SLIIGVDIVPIKALPNCITFQSDITTEDCRSQLRGHMKTWKAD 114
Query: 122 LVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLK 181
V+ DGAP+V D F QS L L L + L GG F+ KIFR +D + L +
Sbjct: 115 TVLHDGAPNVGLGWVQDAFTQSHLTLQALKLAVENLNTGGTFVTKIFRSRDYNNLMWVFQ 174
Query: 182 LFFPVVTFAKPKSSRNSSIEAFAVCENYFPPEGFNPK 218
F V KP +SRN S E F VC+ Y P+ +P+
Sbjct: 175 QLFEKVEATKPPASRNVSAEIFVVCKGYKSPKKMDPR 211
>sp|Q4FMX1|RLME_PELUB Ribosomal RNA large subunit methyltransferase E OS=Pelagibacter
ubique (strain HTCC1062) GN=rlmE PE=3 SV=1
Length = 203
Score = 143 bits (360), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 79/203 (38%), Positives = 120/203 (59%), Gaps = 14/203 (6%)
Query: 5 SRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLY 64
++ KRDIY R+++ +G+RARSA+KL++IDE+F IF+ V+DL A+PGSWSQ +SR +
Sbjct: 12 NKQKRDIYVRQSQVDGYRARSAYKLIEIDEKFKIFKNGISVIDLGASPGSWSQYISRTV- 70
Query: 65 LPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVV 124
+ G L V+IDL+ M IE IQ++GD T+ + E + F K D+VV
Sbjct: 71 ---------KSGRL---VSIDLKGMEEIENTIQIKGDFTDLESQEKIKALFK-SKVDVVV 117
Query: 125 CDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFF 184
D A + TG+ D+D +L + + +L + G+F++KIF G + + K F
Sbjct: 118 SDMAVNTTGIKDIDAIYTGELAMEAMNFSKEMLVKEGRFVSKIFLGSSFNEIVALGKKLF 177
Query: 185 PVVTFAKPKSSRNSSIEAFAVCE 207
V KPKSSR S E+F +C+
Sbjct: 178 KEVKVFKPKSSRKESKESFIICK 200
>sp|Q54NX0|SPB1_DICDI Putative rRNA methyltransferase OS=Dictyostelium discoideum GN=fsjC
PE=3 SV=1
Length = 833
Score = 142 bits (359), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 77/216 (35%), Positives = 118/216 (54%), Gaps = 12/216 (5%)
Query: 3 KASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRK 62
K ++ + D +Y AKE+G+R+R+AFKL+Q+++++N K +DLCAAPG W QV S+
Sbjct: 7 KLAKGRLDKFYYMAKEQGYRSRAAFKLIQLNKKYNFLGTAKACLDLCAAPGGWMQVASK- 65
Query: 63 LYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADL 122
Y+P + LIV +DL P+ + I + DIT + + + K D+
Sbjct: 66 -YMPVQ----------SLIVGVDLVPIRQVRNCIGLTEDITTQKCRTEIKKALKTWKVDV 114
Query: 123 VVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKL 182
+ DGAP++ D + Q++L L L + T L GG F+ K+FRG D + L
Sbjct: 115 CLHDGAPNMGTSWVQDAYQQAELTLHALKLATEFLTTGGWFVTKVFRGSDYNSLIWVFNK 174
Query: 183 FFPVVTFAKPKSSRNSSIEAFAVCENYFPPEGFNPK 218
F V KP SSRN+S E F VC+ + P+ +PK
Sbjct: 175 LFKKVESTKPPSSRNASAEIFVVCQGFLNPKRIDPK 210
>sp|A0B8A1|RLME_METTP Ribosomal RNA large subunit methyltransferase E OS=Methanosaeta
thermophila (strain DSM 6194 / PT) GN=rlmE PE=3 SV=1
Length = 255
Score = 142 bits (359), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 78/206 (37%), Positives = 119/206 (57%), Gaps = 15/206 (7%)
Query: 5 SRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLY 64
+RD++D YYRKAKEEG+RARSA+KL QI+++F+I RVVDL AAPG W QV
Sbjct: 2 ARDQKDHYYRKAKEEGYRARSAYKLKQINDKFHIIRRGSRVVDLGAAPGGWLQV------ 55
Query: 65 LPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVV 124
+RE ++V +DL+ + P+EG++ +QGDIT T E + G +AD+V+
Sbjct: 56 --------ARELSGGIVVGVDLERIEPLEGIVTIQGDITKEETLEQIAAAL-GGQADVVI 106
Query: 125 CDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFF 184
D AP+++G+ D+D L A L + +L+ GG F+ K+F+G + ++K F
Sbjct: 107 SDAAPNLSGIWDVDHARSIDLSRAALRIAKRLLRPGGSFLVKVFQGDMFNDYLEEVKREF 166
Query: 185 PVVTFAKPKSSRNSSIEAFAVCENYF 210
V P +SR S E + + +
Sbjct: 167 SSVHAYTPPASRKESAEIYVIGKKLL 192
>sp|Q2GB53|RLME_NOVAD Ribosomal RNA large subunit methyltransferase E OS=Novosphingobium
aromaticivorans (strain DSM 12444) GN=rlmE PE=3 SV=1
Length = 222
Score = 134 bits (336), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 78/205 (38%), Positives = 106/205 (51%), Gaps = 14/205 (6%)
Query: 5 SRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLY 64
SR D Y +KAK EGWR+R+AFKL+++DE+F + +G KRVVDL APG WSQV+ +K
Sbjct: 27 SRQLNDPYVKKAKAEGWRSRAAFKLIELDEKFGLLKGAKRVVDLGIAPGGWSQVVRKK-- 84
Query: 65 LPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVV 124
+P ++ IV IDL P PIEGV + D E + DG DLV+
Sbjct: 85 -----APAAK------IVGIDLLPTEPIEGVTIFEMDFMADEAPEALQSALDGP-PDLVL 132
Query: 125 CDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFF 184
D A + G D L+ + L GG F+AK+F G + L LK F
Sbjct: 133 SDMAANTVGHKQTDHLRTMGLVETAVDFAVQTLAPGGAFVAKVFAGGTDTELLAILKKNF 192
Query: 185 PVVTFAKPKSSRNSSIEAFAVCENY 209
V AKP +SR S E + + + +
Sbjct: 193 TTVKHAKPPASRKDSSEWYVIAQGF 217
>sp|C5CKU4|RLME_VARPS Ribosomal RNA large subunit methyltransferase E OS=Variovorax
paradoxus (strain S110) GN=rlmE PE=3 SV=1
Length = 222
Score = 133 bits (334), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 81/198 (40%), Positives = 111/198 (56%), Gaps = 8/198 (4%)
Query: 10 DIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKL 69
D Y + A EG+RAR+A+KL +IDE + + + VVDL + PG+WSQ L R++
Sbjct: 21 DPYVKLATREGYRARAAYKLKEIDESLGLVKPGQLVVDLGSTPGAWSQYLRRRM------ 74
Query: 70 SPD-SREGDLP-LIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDG 127
SP+ + G+L I+A+D+ PM PIEGV +QGD A E V+ G KADLVV D
Sbjct: 75 SPEGAAAGELNGTIIALDILPMEPIEGVTFLQGDFREAELLEQVLGVLAGRKADLVVSDM 134
Query: 128 APDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVV 187
AP+++G+H D + LI + H LK G +AK+F G L K F V
Sbjct: 135 APNLSGIHSADAARVAHLIELAIDFAQHHLKPEGALVAKLFHGSGYDELVKLFKANFRTV 194
Query: 188 TFAKPKSSRNSSIEAFAV 205
KPK+SR+ S E F V
Sbjct: 195 KPFKPKASRDKSSETFLV 212
>sp|Q8TR92|RLME_METAC Ribosomal RNA large subunit methyltransferase E OS=Methanosarcina
acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 /
C2A) GN=rlmE PE=3 SV=1
Length = 272
Score = 130 bits (328), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 74/206 (35%), Positives = 115/206 (55%), Gaps = 14/206 (6%)
Query: 5 SRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLY 64
+RD+RD YY +AKEEG+R+R++FKL QI+E+ N+ + VVDL AAPG W QV
Sbjct: 2 ARDRRDYYYHQAKEEGYRSRASFKLKQINEKHNVIKRGDSVVDLGAAPGGWLQV------ 55
Query: 65 LPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVV 124
+LS ++ +DLQ +APIEGV +QGDI T + +IR AD+V+
Sbjct: 56 -AKQLSGGK-------VLGVDLQRIAPIEGVETIQGDINADSTIKKIIRAVGEKGADVVL 107
Query: 125 CDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFF 184
CD AP+++G D +L + L +LK G F+ K+F+G + +++ F
Sbjct: 108 CDAAPNLSGNWSYDHARSIELTTSALECAKKILKPKGNFVVKVFQGDMFNDYLEKVRDNF 167
Query: 185 PVVTFAKPKSSRNSSIEAFAVCENYF 210
V P++SR+ S E + + + +
Sbjct: 168 VHVKAYSPQASRSQSAEIYVIGKKFL 193
>sp|Q5GS59|RLME_WOLTR Ribosomal RNA large subunit methyltransferase E OS=Wolbachia sp.
subsp. Brugia malayi (strain TRS) GN=rlmE PE=3 SV=1
Length = 216
Score = 130 bits (326), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 76/210 (36%), Positives = 110/210 (52%), Gaps = 22/210 (10%)
Query: 6 RDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYL 65
R D Y +K ++ +R+RSA+KL++ID +F + + +++VDL A+PG WSQV S+K
Sbjct: 24 RHLNDQYVQKTNKDSYRSRSAYKLIEIDNKFKLLQAGQKIVDLGASPGGWSQVASQKG-- 81
Query: 66 PAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVC 125
+VAID++P+ I GV +Q DI T F K D+++
Sbjct: 82 -------------VKVVAIDIKPVNTISGVKYIQYDINELETLR---ERFKDQKFDVILS 125
Query: 126 DGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFP 185
D AP+ GL +D L A L H L GGKF+ KIF+G+ Y +LK F
Sbjct: 126 DMAPESCGLKSLDHIRIMLLCEAALNFAKHFLNYGGKFVVKIFQGESDKDFYNELKKMFK 185
Query: 186 VVTFAKPKSSRNSSIEAFAV----CENYFP 211
+V + KPKSSR+ S E + V N FP
Sbjct: 186 IVKYFKPKSSRSESTEMYLVGLGFISNSFP 215
>sp|Q5NQH8|RLME_ZYMMO Ribosomal RNA large subunit methyltransferase E OS=Zymomonas
mobilis subsp. mobilis (strain ATCC 31821 / ZM4 / CP4)
GN=rlmE PE=3 SV=1
Length = 221
Score = 130 bits (326), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 74/204 (36%), Positives = 107/204 (52%), Gaps = 14/204 (6%)
Query: 6 RDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYL 65
R D Y +KA+ EG+R+R+AFKL+++DE F++ + +R++DL APG WSQV +K
Sbjct: 25 RQLNDPYVQKAQAEGYRSRAAFKLIELDERFSLLKNARRIIDLGIAPGGWSQVARKK--- 81
Query: 66 PAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVC 125
+P ++ IV IDL APIEGV Q D T+ + +I G ADLV+
Sbjct: 82 ----APQAK------IVGIDLLEAAPIEGVTIFQNDFTDPEAQKKLIEALGGA-ADLVLS 130
Query: 126 DGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFP 185
D A + G D L+ + L+EGG F+AK+ G L LK F
Sbjct: 131 DMAANTIGHAQTDHLRTMALVEEAAVFASETLREGGSFVAKVLAGGADKDLVALLKRLFG 190
Query: 186 VVTFAKPKSSRNSSIEAFAVCENY 209
V AKP +SR S E + + +N+
Sbjct: 191 QVKHAKPPASRRESSEWYVIAQNF 214
>sp|Q466Q1|RLME_METBF Ribosomal RNA large subunit methyltransferase E OS=Methanosarcina
barkeri (strain Fusaro / DSM 804) GN=rlmE PE=3 SV=1
Length = 263
Score = 129 bits (323), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 76/229 (33%), Positives = 119/229 (51%), Gaps = 14/229 (6%)
Query: 5 SRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLY 64
+RD+RD YYR+AKEEG+R+R++FKL QI+E +I VVDL AAPG W QV
Sbjct: 2 ARDRRDYYYRQAKEEGYRSRASFKLKQINERHHIINRGDSVVDLGAAPGGWLQV------ 55
Query: 65 LPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVV 124
++E ++ +DLQ + PIEGV +QG+I T + +I+ AD+V+
Sbjct: 56 --------AKELSGGKVLGVDLQRIVPIEGVETIQGNINADSTIQKIIKTVGAKGADVVL 107
Query: 125 CDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFF 184
CD AP+++G D +L + L +LK G F+ K+F+G + +++ F
Sbjct: 108 CDAAPNLSGNWSYDHARSIELATSALECAKKILKPKGNFVVKVFQGDMFNDYMQKVRDNF 167
Query: 185 PVVTFAKPKSSRNSSIEAFAVCENYFPPEGFNPKDLHRLLEKVGSPWGG 233
PK+SR+ S E + + + + +EK+GS G
Sbjct: 168 VRTMAYSPKASRSQSAEIYVIGKKFLTAPLRKGDKFVVDIEKLGSSGDG 216
>sp|Q2NHD6|RLME_METST Ribosomal RNA large subunit methyltransferase E OS=Methanosphaera
stadtmanae (strain DSM 3091) GN=rlmE PE=3 SV=1
Length = 206
Score = 128 bits (322), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 74/209 (35%), Positives = 118/209 (56%), Gaps = 14/209 (6%)
Query: 3 KASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRK 62
KA DK YY+ AK++ +R+R+++KL Q+D+++++ + VVDL AAPG WSQV++
Sbjct: 5 KAKHDKEH-YYKLAKKQNYRSRASYKLKQLDKKYSLLKPDYNVVDLGAAPGGWSQVVAET 63
Query: 63 LYLPAKLSPDSREGDLPLIVAIDLQPMAPI--EGVIQVQGDITNARTAEVVIRHFDGCKA 120
+ EG I+++DL+ + PI E V+GD T T +++I DG KA
Sbjct: 64 I---------GEEGK-GQIISVDLEYIKPIDHEAYTGVKGDFTTKETQDIIIELIDG-KA 112
Query: 121 DLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQL 180
D+V+ D AP +TG+ D+D F L +A + ++ ++LK G I K F+G+ + L
Sbjct: 113 DVVLSDAAPKLTGIKDIDNFRAYDLSMAVIEIIDNILKNNGNLIMKAFQGEAYQEIIKNL 172
Query: 181 KLFFPVVTFAKPKSSRNSSIEAFAVCENY 209
K F V KP SSR S E + + +
Sbjct: 173 KKKFRNVKTTKPNSSRKRSAEMYVIARGF 201
>sp|Q58771|RLME_METJA Ribosomal RNA large subunit methyltransferase E
OS=Methanocaldococcus jannaschii (strain ATCC 43067 /
DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=rlmE PE=3
SV=1
Length = 245
Score = 128 bits (321), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 74/209 (35%), Positives = 115/209 (55%), Gaps = 22/209 (10%)
Query: 8 KRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPA 67
KRD YY+ AK+ +R+R++FKL+Q++E+FN+ + K V+DL APG W QV
Sbjct: 13 KRDFYYKLAKKLKYRSRASFKLMQLNEKFNVIKPGKIVLDLGCAPGGWMQV--------- 63
Query: 68 KLSPDSRE--GDLPLIVAIDLQPMAPIE--GVIQVQGDIT---NARTAEVVIRHFDGCKA 120
+RE GD ++ IDLQP+ P E V+ ++GD T N +I + D K
Sbjct: 64 -----AREIVGDKGFVIGIDLQPVKPFEYDNVVAIKGDFTLEENLNKIRELIPN-DEKKV 117
Query: 121 DLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQL 180
D+V+ D +P+++G D+D L+ L + T +LKE G F+AK+F G +
Sbjct: 118 DVVISDASPNISGYWDIDHARSIDLVTTALQIATEMLKERGNFVAKVFYGDMIDDYVNLV 177
Query: 181 KLFFPVVTFAKPKSSRNSSIEAFAVCENY 209
K +F V KP++SR S E + + + Y
Sbjct: 178 KKYFEKVYITKPQASRKESAEVYVIAKRY 206
>sp|A5VFI9|RLME_SPHWW Ribosomal RNA large subunit methyltransferase E OS=Sphingomonas
wittichii (strain RW1 / DSM 6014 / JCM 10273) GN=rlmE
PE=3 SV=1
Length = 229
Score = 127 bits (318), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 75/208 (36%), Positives = 109/208 (52%), Gaps = 22/208 (10%)
Query: 6 RDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYL 65
R D Y RKA+ EG+R+R+A+KL+++DE F+ G KRV+DL APG W+QV+ R
Sbjct: 28 RQLNDPYVRKAQAEGYRSRAAYKLIELDERFHFLRGAKRVIDLGIAPGGWTQVVRR---- 83
Query: 66 PAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITN----ARTAEVVIRHFDGCKAD 121
+ P + IV IDL P PI+G I +Q D + A+ AE + G AD
Sbjct: 84 ---VCPQA------AIVGIDLLPTDPIDGAIILQMDFMSDEAPAQLAEAL-----GGPAD 129
Query: 122 LVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLK 181
+V+ D A + G D L+ AG + VL+ GG ++AK+ G L +LK
Sbjct: 130 IVLSDMAANTVGHQQTDHLRTMALVEAGCLFASEVLRPGGTYVAKVLAGGADHGLVAELK 189
Query: 182 LFFPVVTFAKPKSSRNSSIEAFAVCENY 209
F V AKP +SR S E + + + +
Sbjct: 190 RLFTTVKHAKPPASRKDSSEWYVIAQGF 217
>sp|Q9HN40|RLME_HALSA Ribosomal RNA large subunit methyltransferase E OS=Halobacterium
salinarum (strain ATCC 700922 / JCM 11081 / NRC-1)
GN=rlmE PE=3 SV=1
Length = 259
Score = 126 bits (317), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 73/207 (35%), Positives = 111/207 (53%), Gaps = 16/207 (7%)
Query: 7 DKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLP 66
+++D YY K+K+EG+R+R+A+KL Q+D+ F++ G VVDL AAPG W QV +
Sbjct: 3 NRKDHYYNKSKQEGYRSRAAYKLQQLDDRFDVLFGGASVVDLGAAPGGWLQVAA------ 56
Query: 67 AKLSPDSREGDLPLIVAIDLQPMAPIE---GVIQVQGDITNARTAEVVIRHFDGCKADLV 123
R G +V +D Q + E G+ V+GD+T T + V +G AD+V
Sbjct: 57 ------ERAGARGKVVGVDFQSITQFETDAGLETVRGDMTEDETRQRVRDAANGS-ADVV 109
Query: 124 VCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLF 183
V D APD+TG +D+D L L +L GG F+ K+F G+D L ++
Sbjct: 110 VSDMAPDMTGEYDLDHARSVHLARQALETARELLDAGGHFVVKVFDGRDFQDLLADIEDE 169
Query: 184 FPVVTFAKPKSSRNSSIEAFAVCENYF 210
F V P +SR++S E + V +N+
Sbjct: 170 FAFVATHSPDASRDASSELYVVGKNHI 196
>sp|B0R7G3|RLME_HALS3 Ribosomal RNA large subunit methyltransferase E OS=Halobacterium
salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rlmE
PE=3 SV=1
Length = 259
Score = 126 bits (317), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 73/207 (35%), Positives = 111/207 (53%), Gaps = 16/207 (7%)
Query: 7 DKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLP 66
+++D YY K+K+EG+R+R+A+KL Q+D+ F++ G VVDL AAPG W QV +
Sbjct: 3 NRKDHYYNKSKQEGYRSRAAYKLQQLDDRFDVLFGGASVVDLGAAPGGWLQVAA------ 56
Query: 67 AKLSPDSREGDLPLIVAIDLQPMAPIE---GVIQVQGDITNARTAEVVIRHFDGCKADLV 123
R G +V +D Q + E G+ V+GD+T T + V +G AD+V
Sbjct: 57 ------ERAGARGKVVGVDFQSITQFETDAGLETVRGDMTEDETRQRVRDAANGS-ADVV 109
Query: 124 VCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLF 183
V D APD+TG +D+D L L +L GG F+ K+F G+D L ++
Sbjct: 110 VSDMAPDMTGEYDLDHARSVHLARQALETARELLDAGGHFVVKVFDGRDFQDLLADIEDE 169
Query: 184 FPVVTFAKPKSSRNSSIEAFAVCENYF 210
F V P +SR++S E + V +N+
Sbjct: 170 FAFVATHSPDASRDASSELYVVGKNHI 196
>sp|Q73IS9|RLME_WOLPM Ribosomal RNA large subunit methyltransferase E OS=Wolbachia
pipientis wMel GN=rlmE PE=3 SV=1
Length = 192
Score = 126 bits (317), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 71/197 (36%), Positives = 108/197 (54%), Gaps = 17/197 (8%)
Query: 9 RDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAK 68
D Y +K ++G+R+RSA+KL+++D +F +F+ ++++DL A+PG WSQV S+K
Sbjct: 2 NDQYVQKTSKDGYRSRSAYKLVEMDNKFKLFQEGQKIIDLGASPGGWSQVASQKG----- 56
Query: 69 LSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGA 128
+VA+D++PM I GV +Q DI N E++ F K D+++ D A
Sbjct: 57 ----------ANVVALDIKPMNAINGVEFIQCDIIN--EFEILREKFKDQKFDVILSDMA 104
Query: 129 PDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVT 188
P+ GL +D L A L H L GG F+ KIF+G+ +LK F V
Sbjct: 105 PESCGLKSLDHIRIMLLCEAALNFAKHFLSHGGTFVVKIFQGESDKDFCNELKKMFKTVK 164
Query: 189 FAKPKSSRNSSIEAFAV 205
+ KPKSSR+ S E + V
Sbjct: 165 YFKPKSSRSESTEMYLV 181
>sp|O28228|RLME_ARCFU Ribosomal RNA large subunit methyltransferase E OS=Archaeoglobus
fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM
9628 / NBRC 100126) GN=rlmE PE=3 SV=1
Length = 191
Score = 125 bits (315), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 71/204 (34%), Positives = 112/204 (54%), Gaps = 17/204 (8%)
Query: 6 RDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYL 65
+D++D YY KAK+EG+R+R+A+KLLQ++ F + V+DL A PG WSQV + L
Sbjct: 2 KDRQDYYYWKAKKEGYRSRAAYKLLQMNRTFKLIREGDLVLDLGATPGGWSQVAA---LL 58
Query: 66 PAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVC 125
A+ +VA+D+ PM P+E V ++GDIT T E IR D+V+
Sbjct: 59 GAR------------VVAVDINPMKPLENVTFIRGDITLPETLE-KIREI-SPDYDVVMS 104
Query: 126 DGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFP 185
D +P ++G +D L A ++ VLK GG F+ K+F+G++ + +LK F
Sbjct: 105 DASPKISGKWTIDHLRSIDLARASFSIAKEVLKPGGNFVVKVFQGEEIQKFFNELKPHFR 164
Query: 186 VVTFAKPKSSRNSSIEAFAVCENY 209
F P++SR S E + + + +
Sbjct: 165 FKKFHSPQASRKRSAEVYFIGKRF 188
>sp|Q8PUP4|RLME_METMA Ribosomal RNA large subunit methyltransferase E OS=Methanosarcina
mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM
11833 / OCM 88) GN=rlmE PE=3 SV=1
Length = 268
Score = 125 bits (314), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 77/229 (33%), Positives = 120/229 (52%), Gaps = 14/229 (6%)
Query: 5 SRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLY 64
+RD+RD YY +AKEEG+R+R++FKL QI+E+ N+ + VVDL AAPG W QV
Sbjct: 2 ARDRRDYYYHQAKEEGYRSRASFKLKQINEKHNVIKRGDSVVDLGAAPGGWLQV------ 55
Query: 65 LPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVV 124
+LS ++ +DLQ + PIEGV +QGDI T + +I+ AD+V+
Sbjct: 56 -AKQLSGGK-------VLGVDLQRIDPIEGVETIQGDINAESTIKKIIKIVGEKGADVVL 107
Query: 125 CDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFF 184
CD AP+++G D +L + L +LK G F K+F+G + +++ F
Sbjct: 108 CDAAPNLSGNWSYDHARSIELATSALECAKKILKPKGNFAVKVFQGDMFNDYLDEVRNNF 167
Query: 185 PVVTFAKPKSSRNSSIEAFAVCENYFPPEGFNPKDLHRLLEKVGSPWGG 233
V P++SR+ S E + + + + +EK+GS G
Sbjct: 168 VRVKAYSPQASRSQSAEIYIIGKKFLTAPLRKGDKFVVDIEKLGSSGDG 216
>sp|O27801|RLME_METTH Ribosomal RNA large subunit methyltransferase E
OS=Methanothermobacter thermautotrophicus (strain ATCC
29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H)
GN=rlmE PE=3 SV=1
Length = 211
Score = 125 bits (313), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 74/219 (33%), Positives = 119/219 (54%), Gaps = 17/219 (7%)
Query: 1 MGK--ASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQV 58
MGK + KRD YYR AK+E +R+R+++KLLQ++ ++ + + RV+DL AAPG WSQV
Sbjct: 1 MGKRWQAERKRDHYYRSAKKENYRSRASYKLLQLNNKYKLIKKGDRVLDLGAAPGGWSQV 60
Query: 59 LSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--PIEGVIQVQGDITNARTAEVVIRHFD 116
K+ G+ L+VA+DLQ + P E ++GD T+ + +IR
Sbjct: 61 ALDKV------------GEEGLVVAVDLQRIKGFPAENFRAIRGDFTDPEVKDKIIREL- 107
Query: 117 GCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLL 176
G +AD+V+ D AP ++G+ D+D L+ L + VL G + K F+G + +
Sbjct: 108 GGRADVVISDAAPSLSGIRDIDHLRSVDLVENVLDIAYRVLDRKGNILIKAFQGPELDRV 167
Query: 177 YCQLKLFFPVVTFAKPKSSRNSSIEAFAVCENYFPPEGF 215
+L+ F + KP SSR +S E + V ++ E +
Sbjct: 168 IKELRKDFWKLKTTKPASSRKASAEMYIVGRDFKGKEKW 206
>sp|A8GMD3|RLME_RICAH Ribosomal RNA large subunit methyltransferase E OS=Rickettsia akari
(strain Hartford) GN=rlmE PE=3 SV=1
Length = 227
Score = 124 bits (312), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 82/203 (40%), Positives = 110/203 (54%), Gaps = 8/203 (3%)
Query: 6 RDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYL 65
R D Y KA+ EG+R+R+A+KLL+I E+F +F ++VDL AAPG WSQV S+ +
Sbjct: 31 RQLNDPYVAKARIEGFRSRAAYKLLEIHEKFKLFTPNMKIVDLGAAPGGWSQVASKLI-- 88
Query: 66 PAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVC 125
K S +S I++IDL + PI GV +Q D T E++I+ DG KAD+V+
Sbjct: 89 --KASDNSLNNK---IISIDLLEIEPIIGVEFLQKDFFEENTEELIIQVLDG-KADIVMS 142
Query: 126 DGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFP 185
D A + TG D L VLK G FIAKIFRG + L ++K F
Sbjct: 143 DMASNTTGHKATDHIRTLLLCEQAFEFALKVLKPSGHFIAKIFRGGAENELLNKVKCEFK 202
Query: 186 VVTFAKPKSSRNSSIEAFAVCEN 208
V KP SSR+ S E + V N
Sbjct: 203 TVKHFKPSSSRSESTEIYLVAIN 225
>sp|B3PQL4|RLME_RHIE6 Ribosomal RNA large subunit methyltransferase E OS=Rhizobium etli
(strain CIAT 652) GN=rlmE PE=3 SV=1
Length = 239
Score = 124 bits (310), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 75/204 (36%), Positives = 104/204 (50%), Gaps = 10/204 (4%)
Query: 6 RDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYL 65
R D Y ++A+ EG+RAR+AFKLL+IDE+++I G +R++DL AAPGSWSQ+ ++ +
Sbjct: 34 RHINDPYVQRAQLEGYRARAAFKLLEIDEKYHILRGARRIIDLGAAPGSWSQIAAK---V 90
Query: 66 PAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVC 125
D R + AID MA + GV +Q D + E ++ G DLV+
Sbjct: 91 TGSTDEDIR------VAAIDFLEMAQLPGVKILQLDFLDPSAPEKLMEAVGGT-PDLVIS 143
Query: 126 DGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFP 185
D A TG H D L VL EGG F+ K F+G L LK F
Sbjct: 144 DMAAPTTGHHRTDHLRTMHLCEVAAHFAIEVLGEGGHFLTKTFQGGTERDLLAMLKQNFR 203
Query: 186 VVTFAKPKSSRNSSIEAFAVCENY 209
V KP SSR S+E F + + +
Sbjct: 204 QVVHVKPNSSRAESVEMFLLAKGF 227
>sp|Q0BT08|RLME_GRABC Ribosomal RNA large subunit methyltransferase E OS=Granulibacter
bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=rlmE
PE=3 SV=1
Length = 230
Score = 123 bits (309), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 72/207 (34%), Positives = 102/207 (49%), Gaps = 15/207 (7%)
Query: 5 SRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLY 64
+R D Y AK +GWR+R+AFKL+++D++F + RV+DL AAPG W+QV ++
Sbjct: 34 TRQLNDPYVAAAKAQGWRSRAAFKLIELDDKFGLISKGSRVIDLGAAPGGWTQVAMKR-- 91
Query: 65 LPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVV 124
++V +DL P+ P+ G +QGD N + G KADLV+
Sbjct: 92 ------------GAAVVVGVDLLPVDPVPGATLIQGDF-NDDDMPARLSSLMGGKADLVM 138
Query: 125 CDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFF 184
D AP+ TG D L L L GG F+AK+F+G L +K F
Sbjct: 139 SDMAPNTTGHAATDHMRIIALTELALHFAFDALAPGGAFVAKVFQGGSEKQLLEPMKQRF 198
Query: 185 PVVTFAKPKSSRNSSIEAFAVCENYFP 211
V AKP SSR S E + V + + P
Sbjct: 199 ASVRHAKPASSRKESSELYVVAKGFRP 225
>sp|A6USA0|RLME_METVS Ribosomal RNA large subunit methyltransferase E OS=Methanococcus
vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rlmE
PE=3 SV=1
Length = 259
Score = 123 bits (309), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 77/226 (34%), Positives = 124/226 (54%), Gaps = 25/226 (11%)
Query: 8 KRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPA 67
K+D YY AK + +R+R+ +KL Q++E+FNI + VVDL APG W Q
Sbjct: 13 KKDPYYNLAKRKNYRSRATYKLFQLNEKFNIIKEKNVVVDLGCAPGGWLQ---------- 62
Query: 68 KLSPDSREGDLPLIVAIDLQPMAPI--EGVIQVQGDITNARTAEVVIRHFDGCKADLVVC 125
+ G+ IV IDLQ + P+ E VI V+GD+T+ T + I+ K D+++C
Sbjct: 63 --AARDMTGEEGFIVGIDLQQIKPLPYENVIAVKGDMTDEETLK-KIQDILPEKPDVIIC 119
Query: 126 DGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKL--- 182
D +P+++G+ D+D +L L T +LK+GG F+ K+F+G L Y ++L
Sbjct: 120 DASPNISGVWDVDHTRSLELTTMALMTATKMLKKGGNFVVKVFQG---DLFYKYVELVSE 176
Query: 183 FFPVVTFAKPKSSRNSSIEAFAVCENYFPPEGFNPK---DLHRLLE 225
+F KP++SR S E + + ++Y + FN K D+ +LL+
Sbjct: 177 YFDKAFTTKPRASREESAEVYVIAKHY-NGKKFNMKSKSDIVKLLK 221
>sp|Q92RT9|RLME_RHIME Ribosomal RNA large subunit methyltransferase E OS=Rhizobium
meliloti (strain 1021) GN=rlmE PE=3 SV=1
Length = 245
Score = 123 bits (309), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 79/204 (38%), Positives = 106/204 (51%), Gaps = 10/204 (4%)
Query: 6 RDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYL 65
R D Y ++A+ EG+RAR+AFKLL+IDE+ I G KR++DL AAPGSWSQ+
Sbjct: 34 RHINDPYVQRAQLEGYRARAAFKLLEIDEKHKILAGAKRIIDLGAAPGSWSQI------- 86
Query: 66 PAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVC 125
AK++ +S + D P + AID M PI GV +Q D + E + + G D+V+
Sbjct: 87 AAKVT-NSTDAD-PRVAAIDFLEMDPIPGVRFLQMDFLDPEAPENLKQAIGGA-PDIVLS 143
Query: 126 DGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFP 185
D A TG D L VL EGG F+AK F+G L LK F
Sbjct: 144 DMAAPTTGHRQTDHIRTMHLCEVAAHFAVEVLAEGGHFLAKTFQGGTERDLLNMLKQNFR 203
Query: 186 VVTFAKPKSSRNSSIEAFAVCENY 209
V KP SSR S+E F + + +
Sbjct: 204 QVVHVKPASSRAESVEMFLLAKGF 227
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.140 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95,536,895
Number of Sequences: 539616
Number of extensions: 3962908
Number of successful extensions: 9525
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 457
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 8491
Number of HSP's gapped (non-prelim): 481
length of query: 249
length of database: 191,569,459
effective HSP length: 115
effective length of query: 134
effective length of database: 129,513,619
effective search space: 17354824946
effective search space used: 17354824946
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)