Query 025715
Match_columns 249
No_of_seqs 172 out of 1935
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 08:45:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025715.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025715hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1099 SAM-dependent methyltr 100.0 1.6E-51 3.4E-56 339.2 16.2 219 1-223 1-219 (294)
2 COG0293 FtsJ 23S rRNA methylas 100.0 2.2E-48 4.8E-53 320.9 21.4 195 6-212 10-204 (205)
3 KOG4589 Cell division protein 100.0 1.2E-47 2.7E-52 307.5 18.3 197 6-214 34-231 (232)
4 PRK11188 rrmJ 23S rRNA methylt 100.0 1.7E-40 3.6E-45 279.5 21.8 194 6-211 16-209 (209)
5 KOG1098 Putative SAM-dependent 100.0 8.9E-42 1.9E-46 313.3 12.0 214 1-226 1-217 (780)
6 PF01728 FtsJ: FtsJ-like methy 100.0 2.5E-39 5.5E-44 266.3 10.3 177 21-209 1-181 (181)
7 TIGR00438 rrmJ cell division p 100.0 8.3E-31 1.8E-35 217.0 22.4 188 10-209 1-188 (188)
8 KOG3673 FtsJ-like RNA methyltr 99.9 5.3E-28 1.2E-32 219.5 6.2 237 6-245 216-485 (845)
9 KOG3674 FtsJ-like RNA methyltr 99.9 8.2E-23 1.8E-27 184.1 10.2 217 18-245 106-348 (696)
10 COG4123 Predicted O-methyltran 99.6 1.6E-14 3.6E-19 123.2 12.4 141 40-200 43-205 (248)
11 COG2226 UbiE Methylase involve 99.5 7.1E-14 1.5E-18 119.1 9.8 105 40-176 50-165 (238)
12 PF01209 Ubie_methyltran: ubiE 99.5 2.4E-14 5.3E-19 122.4 6.6 117 40-187 46-173 (233)
13 TIGR00446 nop2p NOL1/NOP2/sun 99.5 2.4E-13 5.3E-18 118.4 12.0 124 40-183 70-218 (264)
14 PRK11933 yebU rRNA (cytosine-C 99.5 5E-13 1.1E-17 124.6 12.7 125 40-183 112-261 (470)
15 PRK14903 16S rRNA methyltransf 99.5 6.1E-13 1.3E-17 123.4 13.2 125 40-183 236-385 (431)
16 PRK14901 16S rRNA methyltransf 99.5 1.4E-12 3.1E-17 121.1 15.0 128 40-183 251-403 (434)
17 PTZ00146 fibrillarin; Provisio 99.5 3.6E-12 7.9E-17 111.5 16.1 124 39-192 130-272 (293)
18 PRK14902 16S rRNA methyltransf 99.4 5.2E-13 1.1E-17 124.4 10.3 131 40-189 249-406 (444)
19 COG0144 Sun tRNA and rRNA cyto 99.4 4.2E-12 9.1E-17 114.9 13.2 128 40-183 155-307 (355)
20 PF05175 MTS: Methyltransferas 99.4 1.4E-12 3.1E-17 106.2 9.2 119 41-190 31-160 (170)
21 TIGR00563 rsmB ribosomal RNA s 99.4 3.8E-12 8.3E-17 118.0 12.8 125 40-183 237-387 (426)
22 PRK14904 16S rRNA methyltransf 99.4 4.2E-12 9E-17 118.4 12.4 123 40-183 249-396 (445)
23 COG2230 Cfa Cyclopropane fatty 99.4 1.2E-12 2.7E-17 113.6 8.0 168 27-232 59-244 (283)
24 KOG1122 tRNA and rRNA cytosine 99.4 6.5E-12 1.4E-16 113.0 12.6 126 40-183 240-390 (460)
25 PRK10901 16S rRNA methyltransf 99.4 5E-12 1.1E-16 117.2 11.7 125 40-183 243-391 (427)
26 PF12847 Methyltransf_18: Meth 99.4 5.2E-12 1.1E-16 95.0 9.7 97 41-167 1-111 (112)
27 PRK11760 putative 23S rRNA C24 99.4 6.1E-12 1.3E-16 111.6 11.0 86 20-128 183-279 (357)
28 PRK04266 fibrillarin; Provisio 99.3 5.8E-11 1.3E-15 101.1 14.8 122 39-191 70-210 (226)
29 TIGR02752 MenG_heptapren 2-hep 99.3 3.8E-11 8.3E-16 102.0 13.5 105 40-175 44-159 (231)
30 KOG1540 Ubiquinone biosynthesi 99.3 2.6E-11 5.6E-16 102.8 11.7 121 41-187 100-234 (296)
31 PLN02233 ubiquinone biosynthes 99.3 2.1E-11 4.6E-16 106.0 11.6 102 40-172 72-187 (261)
32 TIGR03534 RF_mod_PrmC protein- 99.2 1.1E-10 2.4E-15 100.1 12.8 133 41-196 87-246 (251)
33 PRK09328 N5-glutamine S-adenos 99.2 2.7E-10 5.9E-15 99.2 14.5 140 40-206 107-273 (275)
34 PF13847 Methyltransf_31: Meth 99.2 3.7E-11 8E-16 95.8 8.1 100 40-169 2-112 (152)
35 TIGR00138 gidB 16S rRNA methyl 99.2 1.4E-10 3.1E-15 95.4 11.6 104 41-182 42-156 (181)
36 PF02353 CMAS: Mycolic acid cy 99.2 2.6E-11 5.5E-16 106.1 7.4 107 28-169 50-168 (273)
37 PF01189 Nol1_Nop2_Fmu: NOL1/N 99.2 3.8E-11 8.3E-16 105.5 8.5 126 40-183 84-238 (283)
38 PRK10258 biotin biosynthesis p 99.2 9.5E-11 2.1E-15 101.0 10.4 105 41-179 42-152 (251)
39 PLN02244 tocopherol O-methyltr 99.2 1.3E-10 2.8E-15 104.8 11.5 96 40-168 117-224 (340)
40 PRK14966 unknown domain/N5-glu 99.2 5.1E-10 1.1E-14 102.4 15.4 144 40-208 250-418 (423)
41 PF13659 Methyltransf_26: Meth 99.2 6.1E-11 1.3E-15 89.9 7.6 103 42-167 1-115 (117)
42 PRK14103 trans-aconitate 2-met 99.2 6.1E-11 1.3E-15 102.6 8.4 96 40-168 28-127 (255)
43 PRK15001 SAM-dependent 23S rib 99.2 2.4E-10 5.2E-15 104.0 12.4 131 42-210 229-373 (378)
44 PRK11873 arsM arsenite S-adeno 99.2 1.3E-10 2.7E-15 101.5 10.1 99 39-168 75-184 (272)
45 PRK00107 gidB 16S rRNA methylt 99.2 1.9E-10 4.2E-15 95.2 10.6 94 38-168 42-146 (187)
46 PRK08287 cobalt-precorrin-6Y C 99.2 3.9E-10 8.5E-15 93.0 12.4 113 40-189 30-154 (187)
47 TIGR00536 hemK_fam HemK family 99.2 5.8E-10 1.3E-14 98.1 14.1 138 43-207 116-281 (284)
48 PRK01683 trans-aconitate 2-met 99.2 1.6E-10 3.6E-15 99.9 9.8 95 40-167 30-130 (258)
49 TIGR02469 CbiT precorrin-6Y C5 99.2 3.5E-10 7.7E-15 86.1 10.3 94 40-167 18-122 (124)
50 TIGR03704 PrmC_rel_meth putati 99.1 4.4E-10 9.6E-15 97.2 11.8 121 42-182 87-230 (251)
51 COG1189 Predicted rRNA methyla 99.1 4.8E-10 1E-14 94.5 11.1 116 17-166 55-177 (245)
52 PRK00121 trmB tRNA (guanine-N( 99.1 2E-10 4.3E-15 96.2 8.8 120 40-182 39-171 (202)
53 PF08241 Methyltransf_11: Meth 99.1 8.2E-11 1.8E-15 85.1 5.4 87 46-165 1-95 (95)
54 PTZ00098 phosphoethanolamine N 99.1 2.2E-10 4.8E-15 99.7 8.7 98 40-168 51-157 (263)
55 TIGR01177 conserved hypothetic 99.1 7.3E-10 1.6E-14 99.4 12.2 113 39-176 180-303 (329)
56 PRK00377 cbiT cobalt-precorrin 99.1 1.2E-09 2.6E-14 91.1 12.6 111 39-182 38-160 (198)
57 TIGR02072 BioC biotin biosynth 99.1 7.7E-10 1.7E-14 93.7 11.6 114 25-171 19-139 (240)
58 PRK14967 putative methyltransf 99.1 9E-10 2E-14 93.5 11.9 132 27-182 23-174 (223)
59 PRK11036 putative S-adenosyl-L 99.1 1.2E-09 2.7E-14 94.4 12.5 105 31-170 36-152 (255)
60 PRK01544 bifunctional N5-gluta 99.1 1.7E-09 3.7E-14 102.3 14.1 134 41-197 138-299 (506)
61 TIGR00537 hemK_rel_arch HemK-r 99.1 2.5E-09 5.4E-14 87.6 13.1 118 41-183 19-156 (179)
62 COG4106 Tam Trans-aconitate me 99.1 1.6E-10 3.5E-15 95.9 5.7 117 16-169 9-131 (257)
63 KOG2198 tRNA cytosine-5-methyl 99.1 3.7E-10 8E-15 100.6 8.1 137 40-185 154-317 (375)
64 TIGR03533 L3_gln_methyl protei 99.1 2.2E-09 4.7E-14 94.5 12.9 118 41-182 121-264 (284)
65 PRK09489 rsmC 16S ribosomal RN 99.1 1.6E-09 3.5E-14 97.6 12.1 117 42-190 197-323 (342)
66 TIGR00091 tRNA (guanine-N(7)-) 99.1 4.2E-10 9.1E-15 93.6 7.7 123 40-183 15-148 (194)
67 PLN02490 MPBQ/MSBQ methyltrans 99.1 3.1E-09 6.8E-14 95.5 13.4 119 40-190 112-255 (340)
68 PRK15068 tRNA mo(5)U34 methylt 99.1 1.6E-09 3.4E-14 97.0 11.4 110 24-168 106-227 (322)
69 COG2813 RsmC 16S RNA G1207 met 99.1 3E-09 6.6E-14 93.0 12.7 117 42-190 159-286 (300)
70 TIGR00080 pimt protein-L-isoas 99.0 8.8E-10 1.9E-14 93.0 9.0 92 39-167 75-177 (215)
71 PRK04457 spermidine synthase; 99.0 8.2E-09 1.8E-13 89.9 15.1 160 40-232 65-239 (262)
72 PRK15128 23S rRNA m(5)C1962 me 99.0 2.8E-09 6E-14 97.9 12.5 121 40-180 219-353 (396)
73 PRK11705 cyclopropane fatty ac 99.0 9E-10 1.9E-14 100.8 9.2 153 40-232 166-333 (383)
74 TIGR00406 prmA ribosomal prote 99.0 1.4E-09 3E-14 95.9 10.2 112 40-189 158-281 (288)
75 PRK14968 putative methyltransf 99.0 1.2E-08 2.7E-13 83.4 14.6 124 40-187 22-169 (188)
76 PRK08317 hypothetical protein; 99.0 2.3E-09 5.1E-14 90.6 10.3 97 40-167 18-124 (241)
77 PRK11088 rrmA 23S rRNA methylt 99.0 2.3E-09 5.1E-14 93.6 10.5 102 40-177 84-191 (272)
78 PRK13942 protein-L-isoaspartat 99.0 1.8E-09 3.8E-14 91.1 9.2 90 40-166 75-175 (212)
79 PLN02336 phosphoethanolamine N 99.0 2E-09 4.3E-14 101.1 10.3 97 39-168 264-370 (475)
80 TIGR00478 tly hemolysin TlyA f 99.0 1.6E-09 3.4E-14 92.3 8.5 109 20-165 54-169 (228)
81 TIGR00452 methyltransferase, p 99.0 3.8E-09 8.3E-14 94.0 11.2 110 24-168 105-226 (314)
82 PRK11207 tellurite resistance 99.0 1.4E-09 2.9E-14 90.8 7.7 93 41-166 30-133 (197)
83 PF06460 NSP13: Coronavirus NS 99.0 3.7E-09 8.1E-14 89.8 9.9 156 41-222 61-226 (299)
84 PRK11805 N5-glutamine S-adenos 99.0 2.9E-09 6.4E-14 94.7 9.7 115 43-181 135-275 (307)
85 COG2242 CobL Precorrin-6B meth 98.9 2E-08 4.4E-13 82.1 12.9 107 40-183 33-151 (187)
86 COG2890 HemK Methylase of poly 98.9 2.3E-08 5.1E-13 87.8 14.2 129 44-196 113-268 (280)
87 COG1092 Predicted SAM-dependen 98.9 8.7E-09 1.9E-13 93.9 11.5 121 41-181 217-351 (393)
88 PRK13944 protein-L-isoaspartat 98.9 6.9E-09 1.5E-13 87.0 10.0 91 40-167 71-173 (205)
89 COG2519 GCD14 tRNA(1-methylade 98.9 6.7E-09 1.5E-13 88.5 9.9 124 40-200 93-238 (256)
90 TIGR00477 tehB tellurite resis 98.9 3.7E-09 7.9E-14 88.0 8.1 94 41-167 30-133 (195)
91 PRK14121 tRNA (guanine-N(7)-)- 98.9 8.2E-09 1.8E-13 93.9 10.8 104 41-169 122-237 (390)
92 COG2264 PrmA Ribosomal protein 98.9 1.8E-08 4E-13 88.4 12.4 115 40-191 161-288 (300)
93 PRK07402 precorrin-6B methylas 98.9 7.3E-09 1.6E-13 86.1 9.5 107 40-181 39-156 (196)
94 PLN02396 hexaprenyldihydroxybe 98.9 3.2E-09 6.8E-14 94.9 7.5 95 41-169 131-237 (322)
95 PRK15451 tRNA cmo(5)U34 methyl 98.9 4.9E-09 1.1E-13 90.4 8.4 99 39-167 54-164 (247)
96 PF05401 NodS: Nodulation prot 98.9 1.2E-08 2.7E-13 84.1 10.1 117 43-191 45-179 (201)
97 TIGR00740 methyltransferase, p 98.9 7.5E-09 1.6E-13 88.6 9.3 99 40-168 52-162 (239)
98 PRK11783 rlmL 23S rRNA m(2)G24 98.9 8E-09 1.7E-13 101.4 10.6 107 41-168 538-657 (702)
99 PHA03412 putative methyltransf 98.9 5.4E-09 1.2E-13 88.9 8.1 102 42-162 50-158 (241)
100 TIGR01934 MenG_MenH_UbiE ubiqu 98.9 1.1E-08 2.4E-13 85.8 9.5 100 40-170 38-146 (223)
101 PF13649 Methyltransf_25: Meth 98.9 5.5E-09 1.2E-13 77.5 6.7 90 45-161 1-101 (101)
102 PHA03411 putative methyltransf 98.9 9.7E-09 2.1E-13 89.2 8.9 104 41-166 64-182 (279)
103 PRK06922 hypothetical protein; 98.9 9.5E-09 2.1E-13 98.4 9.5 103 41-167 418-537 (677)
104 PRK00811 spermidine synthase; 98.8 5.5E-08 1.2E-12 85.6 12.9 141 40-208 75-237 (283)
105 PRK00517 prmA ribosomal protei 98.8 1.7E-08 3.7E-13 87.2 9.5 115 40-189 118-236 (250)
106 PRK05785 hypothetical protein; 98.8 1.1E-08 2.4E-13 87.1 8.1 88 40-160 50-140 (226)
107 PF13489 Methyltransf_23: Meth 98.8 5.1E-09 1.1E-13 83.2 5.5 99 39-171 20-119 (161)
108 PLN03075 nicotianamine synthas 98.8 2.7E-08 6E-13 87.5 10.2 127 41-200 123-268 (296)
109 smart00828 PKS_MT Methyltransf 98.8 1.6E-08 3.4E-13 85.5 8.3 93 43-168 1-105 (224)
110 PF08242 Methyltransf_12: Meth 98.8 7.8E-09 1.7E-13 76.2 5.6 88 46-163 1-99 (99)
111 PF06325 PrmA: Ribosomal prote 98.8 4.1E-08 8.8E-13 86.7 10.9 112 39-188 159-280 (295)
112 PF14314 Methyltrans_Mon: Viru 98.8 2.9E-07 6.2E-12 88.5 17.3 191 6-221 289-511 (675)
113 PRK12335 tellurite resistance 98.8 1.3E-08 2.8E-13 89.7 7.7 94 39-166 119-222 (287)
114 PRK00216 ubiE ubiquinone/menaq 98.8 7.4E-08 1.6E-12 81.6 12.0 100 40-170 50-161 (239)
115 PF01135 PCMT: Protein-L-isoas 98.8 1.3E-08 2.7E-13 85.7 6.0 92 39-167 70-172 (209)
116 TIGR03587 Pse_Me-ase pseudamin 98.7 8.4E-08 1.8E-12 80.5 10.2 98 38-168 40-143 (204)
117 PF03848 TehB: Tellurite resis 98.7 2.5E-08 5.4E-13 82.6 6.9 101 34-168 24-134 (192)
118 COG2227 UbiG 2-polyprenyl-3-me 98.7 2.2E-08 4.7E-13 84.8 6.4 95 41-169 59-163 (243)
119 PRK13943 protein-L-isoaspartat 98.7 6.7E-08 1.5E-12 86.4 9.6 91 40-167 79-180 (322)
120 PLN02336 phosphoethanolamine N 98.7 4.3E-08 9.4E-13 92.1 8.4 97 41-167 37-142 (475)
121 PF08704 GCD14: tRNA methyltra 98.7 6.5E-08 1.4E-12 83.3 8.5 118 39-189 38-169 (247)
122 PF07021 MetW: Methionine bios 98.7 8.3E-08 1.8E-12 79.0 8.6 69 38-126 10-82 (193)
123 KOG1975 mRNA cap methyltransfe 98.7 3.9E-08 8.4E-13 86.3 7.0 149 7-182 75-249 (389)
124 PRK00312 pcm protein-L-isoaspa 98.7 1.1E-07 2.5E-12 79.8 9.3 89 40-168 77-176 (212)
125 PF10672 Methyltrans_SAM: S-ad 98.7 5.6E-08 1.2E-12 85.3 7.3 117 41-181 123-253 (286)
126 smart00138 MeTrc Methyltransfe 98.6 1E-07 2.2E-12 83.1 8.3 101 41-166 99-241 (264)
127 PLN02672 methionine S-methyltr 98.6 1.6E-07 3.5E-12 95.0 10.6 130 42-192 119-304 (1082)
128 cd02440 AdoMet_MTases S-adenos 98.6 3E-07 6.5E-12 66.1 8.5 92 44-166 1-103 (107)
129 KOG1271 Methyltransferases [Ge 98.6 1.7E-07 3.7E-12 76.2 7.6 125 40-190 66-204 (227)
130 COG2521 Predicted archaeal met 98.6 4.5E-07 9.8E-12 76.4 10.4 121 40-190 133-276 (287)
131 KOG1270 Methyltransferases [Co 98.6 8.9E-08 1.9E-12 81.9 6.0 90 42-168 90-196 (282)
132 TIGR03840 TMPT_Se_Te thiopurin 98.6 2.2E-07 4.8E-12 78.5 8.4 98 40-168 33-153 (213)
133 TIGR03438 probable methyltrans 98.6 7.5E-07 1.6E-11 79.1 12.2 105 40-168 62-178 (301)
134 PLN02781 Probable caffeoyl-CoA 98.6 2.9E-07 6.2E-12 78.9 9.2 98 40-165 67-176 (234)
135 PLN02366 spermidine synthase 98.6 5E-07 1.1E-11 80.4 10.4 123 40-189 90-233 (308)
136 smart00650 rADc Ribosomal RNA 98.5 3.6E-07 7.8E-12 74.2 8.3 92 40-166 12-112 (169)
137 TIGR02716 C20_methyl_CrtF C-20 98.5 2.7E-07 5.9E-12 81.9 8.1 98 39-168 147-255 (306)
138 KOG2904 Predicted methyltransf 98.5 1.4E-06 3E-11 75.1 11.9 141 42-206 149-325 (328)
139 PRK06202 hypothetical protein; 98.5 9.2E-07 2E-11 75.4 10.6 102 40-169 59-168 (232)
140 PRK00050 16S rRNA m(4)C1402 me 98.5 2.5E-06 5.3E-11 75.4 13.4 81 30-127 9-98 (296)
141 COG1041 Predicted DNA modifica 98.5 7.7E-07 1.7E-11 79.4 10.1 137 39-205 195-344 (347)
142 KOG3191 Predicted N6-DNA-methy 98.5 5.7E-06 1.2E-10 67.3 12.9 143 42-209 44-207 (209)
143 TIGR00417 speE spermidine synt 98.4 2.3E-06 5E-11 74.8 10.9 140 41-208 72-232 (270)
144 PRK10909 rsmD 16S rRNA m(2)G96 98.4 1.7E-06 3.6E-11 72.3 9.2 99 40-169 52-161 (199)
145 PLN02476 O-methyltransferase 98.4 2E-06 4.3E-11 75.3 10.0 99 40-166 117-227 (278)
146 PF01269 Fibrillarin: Fibrilla 98.4 4.4E-07 9.6E-12 76.2 5.6 99 39-167 71-178 (229)
147 TIGR02081 metW methionine bios 98.4 6.4E-07 1.4E-11 74.3 6.5 72 39-130 11-86 (194)
148 COG2518 Pcm Protein-L-isoaspar 98.4 1.7E-06 3.8E-11 72.2 8.8 89 40-168 71-170 (209)
149 PRK03612 spermidine synthase; 98.4 1.4E-06 2.9E-11 83.0 9.3 118 40-184 296-437 (521)
150 PF03291 Pox_MCEL: mRNA cappin 98.4 2.6E-07 5.7E-12 82.9 3.6 104 41-169 62-188 (331)
151 PRK05134 bifunctional 3-demeth 98.4 1.9E-06 4E-11 73.3 8.7 97 40-169 47-153 (233)
152 PF08003 Methyltransf_9: Prote 98.4 3.5E-06 7.5E-11 74.0 10.2 96 41-168 115-220 (315)
153 KOG4300 Predicted methyltransf 98.3 1.3E-06 2.8E-11 72.5 6.7 109 44-185 79-200 (252)
154 PRK13168 rumA 23S rRNA m(5)U19 98.3 5.7E-06 1.2E-10 77.3 11.8 70 40-128 296-376 (443)
155 TIGR01983 UbiG ubiquinone bios 98.3 1.9E-06 4E-11 72.7 7.8 96 41-169 45-151 (224)
156 PF02390 Methyltransf_4: Putat 98.3 9.4E-07 2E-11 73.6 5.8 104 42-167 18-133 (195)
157 COG2263 Predicted RNA methylas 98.3 1.1E-05 2.4E-10 66.1 11.3 81 25-132 31-121 (198)
158 PRK01581 speE spermidine synth 98.3 1.2E-05 2.7E-10 72.6 12.6 122 41-189 150-294 (374)
159 TIGR00095 RNA methyltransferas 98.3 5.2E-06 1.1E-10 68.8 8.8 101 41-169 49-161 (189)
160 PRK13255 thiopurine S-methyltr 98.2 4.5E-06 9.8E-11 70.7 8.3 95 40-165 36-153 (218)
161 PF01596 Methyltransf_3: O-met 98.2 2.4E-06 5.3E-11 71.7 6.3 99 40-166 44-154 (205)
162 TIGR02021 BchM-ChlM magnesium 98.2 2.6E-06 5.7E-11 71.8 6.1 90 40-164 54-155 (219)
163 PRK11727 23S rRNA mA1618 methy 98.2 4.7E-05 1E-09 68.1 14.2 150 41-212 114-310 (321)
164 PF05148 Methyltransf_8: Hypot 98.2 2.7E-05 5.9E-10 65.0 10.7 108 41-188 72-182 (219)
165 KOG1596 Fibrillarin and relate 98.1 4.2E-06 9.2E-11 70.9 5.7 100 39-168 154-262 (317)
166 KOG1541 Predicted protein carb 98.1 1.3E-05 2.7E-10 67.3 8.0 134 42-199 51-196 (270)
167 TIGR00479 rumA 23S rRNA (uraci 98.1 2.5E-05 5.4E-10 72.7 11.0 70 40-128 291-371 (431)
168 PRK03522 rumB 23S rRNA methylu 98.1 5.7E-05 1.2E-09 67.5 12.5 66 41-128 173-249 (315)
169 PF03602 Cons_hypoth95: Conser 98.1 9E-06 1.9E-10 67.1 6.6 101 41-170 42-156 (183)
170 PF01170 UPF0020: Putative RNA 98.1 2.7E-05 5.8E-10 64.0 9.2 120 40-176 27-158 (179)
171 PRK07580 Mg-protoporphyrin IX 98.1 9.7E-06 2.1E-10 68.5 6.6 64 40-129 62-137 (230)
172 PLN02823 spermine synthase 98.1 9.6E-05 2.1E-09 66.6 13.3 125 41-191 103-250 (336)
173 COG3963 Phospholipid N-methylt 98.0 5.1E-05 1.1E-09 61.1 9.4 107 40-170 47-159 (194)
174 COG0742 N6-adenine-specific me 98.0 3E-05 6.5E-10 63.8 8.3 102 41-170 43-157 (187)
175 PRK14896 ksgA 16S ribosomal RN 98.0 1.9E-05 4.1E-10 68.6 7.3 66 40-130 28-102 (258)
176 COG0220 Predicted S-adenosylme 98.0 3.4E-05 7.3E-10 65.7 8.5 102 43-167 50-164 (227)
177 TIGR02085 meth_trns_rumB 23S r 98.0 2.7E-05 5.8E-10 71.2 8.5 66 41-128 233-309 (374)
178 KOG2361 Predicted methyltransf 98.0 1.4E-05 3.1E-10 67.8 5.8 110 43-176 73-192 (264)
179 KOG3010 Methyltransferase [Gen 98.0 1.4E-05 3E-10 67.8 5.4 87 44-165 36-135 (261)
180 PLN02585 magnesium protoporphy 97.9 5.2E-05 1.1E-09 67.7 9.1 62 41-128 144-221 (315)
181 COG2933 Predicted SAM-dependen 97.9 2E-05 4.3E-10 67.7 5.8 84 22-128 185-279 (358)
182 COG1889 NOP1 Fibrillarin-like 97.9 8.3E-05 1.8E-09 61.6 9.1 96 39-165 74-178 (231)
183 PF02475 Met_10: Met-10+ like- 97.9 3E-05 6.6E-10 64.8 6.5 89 39-164 99-199 (200)
184 PRK00274 ksgA 16S ribosomal RN 97.9 2.6E-05 5.5E-10 68.3 6.2 67 40-129 41-115 (272)
185 PF05185 PRMT5: PRMT5 arginine 97.9 2.6E-05 5.5E-10 72.9 6.4 97 41-164 186-294 (448)
186 KOG1499 Protein arginine N-met 97.9 3E-05 6.5E-10 69.1 6.4 95 40-164 59-164 (346)
187 COG4122 Predicted O-methyltran 97.9 0.00012 2.6E-09 61.9 9.6 95 40-166 58-165 (219)
188 TIGR00755 ksgA dimethyladenosi 97.9 8.9E-05 1.9E-09 64.1 9.0 65 40-129 28-104 (253)
189 PRK04338 N(2),N(2)-dimethylgua 97.9 4.7E-05 1E-09 69.8 7.6 89 42-166 58-157 (382)
190 PF00891 Methyltransf_2: O-met 97.8 0.00011 2.4E-09 62.8 9.5 96 40-168 99-200 (241)
191 COG4976 Predicted methyltransf 97.8 6E-06 1.3E-10 69.6 1.2 95 43-169 127-227 (287)
192 COG0421 SpeE Spermidine syntha 97.8 0.00036 7.8E-09 61.3 12.4 137 43-207 78-235 (282)
193 PF05219 DREV: DREV methyltran 97.8 0.00012 2.6E-09 63.0 9.1 121 11-168 54-189 (265)
194 KOG1500 Protein arginine N-met 97.8 4.8E-05 1E-09 67.5 6.6 93 41-165 177-280 (517)
195 KOG1663 O-methyltransferase [S 97.8 0.00022 4.8E-09 60.2 9.8 97 41-165 73-181 (237)
196 PF02384 N6_Mtase: N-6 DNA Met 97.8 1.8E-05 4E-10 70.2 3.5 117 40-168 45-184 (311)
197 PLN02589 caffeoyl-CoA O-methyl 97.8 0.00013 2.7E-09 63.1 8.4 97 41-165 79-188 (247)
198 PRK01544 bifunctional N5-gluta 97.8 7.4E-05 1.6E-09 71.0 7.6 105 40-167 346-462 (506)
199 PTZ00338 dimethyladenosine tra 97.8 5.7E-05 1.2E-09 66.8 6.4 67 40-131 35-113 (294)
200 PRK04148 hypothetical protein; 97.8 0.00022 4.8E-09 55.7 8.8 94 41-172 16-114 (134)
201 KOG3045 Predicted RNA methylas 97.7 0.00038 8.2E-09 59.9 10.8 103 41-185 180-285 (325)
202 COG2520 Predicted methyltransf 97.7 0.00023 5E-09 64.0 9.9 95 40-171 187-293 (341)
203 PRK13256 thiopurine S-methyltr 97.7 6.9E-05 1.5E-09 63.8 5.8 101 40-169 42-165 (226)
204 KOG2899 Predicted methyltransf 97.6 0.00011 2.3E-09 62.6 5.8 34 42-88 59-92 (288)
205 KOG3420 Predicted RNA methylas 97.6 0.00022 4.8E-09 56.2 6.8 89 20-131 25-126 (185)
206 PF10294 Methyltransf_16: Puta 97.6 0.0009 1.9E-08 54.6 10.4 116 39-182 43-172 (173)
207 COG4076 Predicted RNA methylas 97.6 0.00012 2.5E-09 60.2 4.8 89 42-164 33-132 (252)
208 PF05724 TPMT: Thiopurine S-me 97.5 0.00029 6.3E-09 59.7 7.3 119 40-189 36-188 (218)
209 KOG2915 tRNA(1-methyladenosine 97.5 0.00047 1E-08 59.6 8.5 92 40-165 104-207 (314)
210 PRK05031 tRNA (uracil-5-)-meth 97.5 0.0015 3.3E-08 59.5 12.1 69 43-128 208-297 (362)
211 COG0357 GidB Predicted S-adeno 97.5 0.0015 3.3E-08 55.1 10.6 87 42-165 68-166 (215)
212 TIGR00006 S-adenosyl-methyltra 97.5 0.0029 6.2E-08 56.2 12.6 80 31-127 11-100 (305)
213 PF01564 Spermine_synth: Sperm 97.5 0.001 2.2E-08 57.4 9.6 124 41-190 76-218 (246)
214 TIGR02143 trmA_only tRNA (urac 97.4 0.0013 2.8E-08 59.8 10.8 70 42-128 198-288 (353)
215 TIGR00308 TRM1 tRNA(guanine-26 97.4 0.00043 9.3E-09 63.3 7.5 91 42-166 45-146 (374)
216 PF12147 Methyltransf_20: Puta 97.4 0.0024 5.1E-08 56.0 11.5 116 41-181 135-264 (311)
217 PF09445 Methyltransf_15: RNA 97.4 8.9E-05 1.9E-09 59.9 2.1 114 43-180 1-132 (163)
218 COG2265 TrmA SAM-dependent met 97.3 0.0021 4.5E-08 59.9 10.5 123 40-197 292-430 (432)
219 PF08123 DOT1: Histone methyla 97.3 0.0021 4.4E-08 54.0 9.4 105 29-164 31-155 (205)
220 PF04989 CmcI: Cephalosporin h 97.2 0.0016 3.5E-08 54.5 8.1 104 40-165 32-145 (206)
221 PF02527 GidB: rRNA small subu 97.2 0.00059 1.3E-08 56.3 5.4 85 44-165 51-146 (184)
222 PF03141 Methyltransf_29: Puta 97.2 0.00041 8.9E-09 64.7 4.9 107 29-168 102-220 (506)
223 PF06080 DUF938: Protein of un 97.2 0.00074 1.6E-08 56.4 5.8 105 39-165 22-139 (204)
224 KOG1661 Protein-L-isoaspartate 97.2 8.7E-05 1.9E-09 61.8 0.2 93 39-167 80-193 (237)
225 PF13578 Methyltransf_24: Meth 97.2 0.00026 5.7E-09 52.5 2.8 92 46-165 1-103 (106)
226 TIGR02987 met_A_Alw26 type II 97.2 0.0015 3.2E-08 62.4 8.4 82 41-130 31-123 (524)
227 COG0030 KsgA Dimethyladenosine 97.2 0.0017 3.7E-08 56.3 7.8 70 40-131 29-107 (259)
228 TIGR03439 methyl_EasF probable 97.1 0.011 2.4E-07 53.0 12.3 109 39-166 74-196 (319)
229 COG0275 Predicted S-adenosylme 97.0 0.02 4.3E-07 50.5 12.7 73 40-127 22-104 (314)
230 PRK11524 putative methyltransf 96.9 0.0061 1.3E-07 53.7 9.2 90 96-192 10-107 (284)
231 PLN02232 ubiquinone biosynthes 96.9 0.0037 7.9E-08 50.2 7.1 61 93-172 26-86 (160)
232 PRK00536 speE spermidine synth 96.9 0.0087 1.9E-07 52.1 9.6 108 41-190 72-198 (262)
233 KOG2360 Proliferation-associat 96.9 0.0055 1.2E-07 55.5 8.5 87 31-135 196-300 (413)
234 PF03141 Methyltransf_29: Puta 96.9 0.0085 1.8E-07 56.1 9.9 130 43-207 367-505 (506)
235 COG4798 Predicted methyltransf 96.8 0.0053 1.1E-07 50.8 7.3 106 39-169 46-168 (238)
236 PF05958 tRNA_U5-meth_tr: tRNA 96.8 0.001 2.3E-08 60.3 3.1 70 44-128 199-287 (352)
237 KOG2940 Predicted methyltransf 96.7 0.0016 3.5E-08 55.2 3.9 106 40-178 71-185 (325)
238 PF01739 CheR: CheR methyltran 96.7 0.0024 5.2E-08 53.2 4.8 101 41-166 31-174 (196)
239 KOG0820 Ribosomal RNA adenine 96.7 0.0052 1.1E-07 53.3 6.6 68 39-131 56-135 (315)
240 KOG2187 tRNA uracil-5-methyltr 96.7 0.0017 3.6E-08 60.8 3.8 63 23-100 365-438 (534)
241 PRK11783 rlmL 23S rRNA m(2)G24 96.5 0.029 6.4E-07 55.5 11.9 119 38-166 187-346 (702)
242 PF00398 RrnaAD: Ribosomal RNA 96.5 0.0039 8.5E-08 54.2 5.0 68 41-128 30-106 (262)
243 PRK10742 putative methyltransf 96.3 0.03 6.6E-07 48.2 9.0 70 40-131 85-176 (250)
244 PF06962 rRNA_methylase: Putat 96.3 0.019 4.1E-07 45.2 6.9 85 80-172 1-97 (140)
245 PF11968 DUF3321: Putative met 96.3 0.021 4.5E-07 48.1 7.6 116 42-190 52-180 (219)
246 PRK13699 putative methylase; P 96.2 0.033 7.1E-07 47.5 8.9 92 96-195 3-103 (227)
247 KOG2671 Putative RNA methylase 96.2 0.016 3.5E-07 51.9 6.8 107 39-167 206-354 (421)
248 PRK10611 chemotaxis methyltran 96.1 0.015 3.3E-07 51.3 6.5 39 118-165 222-260 (287)
249 COG3897 Predicted methyltransf 95.8 0.056 1.2E-06 44.9 8.1 94 40-172 78-182 (218)
250 KOG3178 Hydroxyindole-O-methyl 95.5 0.064 1.4E-06 48.2 8.0 95 41-168 177-276 (342)
251 PF05891 Methyltransf_PK: AdoM 95.3 0.031 6.8E-07 47.1 5.0 96 42-168 56-162 (218)
252 COG1352 CheR Methylase of chem 95.3 0.06 1.3E-06 47.0 6.9 99 42-165 97-239 (268)
253 TIGR01444 fkbM_fam methyltrans 95.1 0.025 5.4E-07 43.9 3.7 48 44-104 1-59 (143)
254 PF13679 Methyltransf_32: Meth 95.1 0.03 6.6E-07 43.9 4.2 41 40-89 24-64 (141)
255 COG0500 SmtA SAM-dependent met 95.1 0.17 3.7E-06 37.6 8.3 94 45-169 52-157 (257)
256 PF09243 Rsm22: Mitochondrial 95.1 0.033 7.3E-07 48.8 4.8 48 29-89 22-69 (274)
257 PF06016 Reovirus_L2: Reovirus 95.0 0.059 1.3E-06 55.5 6.8 99 115-217 565-665 (1289)
258 KOG0024 Sorbitol dehydrogenase 94.8 0.21 4.6E-06 44.6 8.8 102 40-171 168-277 (354)
259 PF01234 NNMT_PNMT_TEMT: NNMT/ 94.6 0.0088 1.9E-07 51.9 -0.2 61 97-166 138-198 (256)
260 PF04672 Methyltransf_19: S-ad 94.5 0.28 6.1E-06 42.8 8.9 108 43-171 70-194 (267)
261 COG0116 Predicted N6-adenine-s 94.5 0.28 6E-06 44.9 9.2 117 40-167 190-344 (381)
262 KOG2730 Methylase [General fun 94.5 0.052 1.1E-06 45.9 4.1 67 42-127 95-173 (263)
263 cd00315 Cyt_C5_DNA_methylase C 94.1 0.066 1.4E-06 46.9 4.3 66 43-129 1-72 (275)
264 COG0286 HsdM Type I restrictio 94.0 0.12 2.7E-06 49.0 6.1 132 21-168 169-327 (489)
265 KOG1269 SAM-dependent methyltr 93.9 0.054 1.2E-06 49.4 3.3 96 40-168 109-216 (364)
266 PF10354 DUF2431: Domain of un 93.8 0.89 1.9E-05 36.8 9.9 109 47-171 2-129 (166)
267 KOG1209 1-Acyl dihydroxyaceton 93.4 0.61 1.3E-05 39.5 8.5 111 41-165 6-136 (289)
268 PF01795 Methyltransf_5: MraW 93.1 0.35 7.5E-06 43.2 7.1 72 40-127 19-101 (310)
269 COG4262 Predicted spermidine s 92.7 0.4 8.7E-06 43.7 6.9 104 40-170 288-410 (508)
270 PF12692 Methyltransf_17: S-ad 92.6 0.96 2.1E-05 36.0 8.0 99 43-165 30-132 (160)
271 PRK08177 short chain dehydroge 92.5 3.2 6.9E-05 34.4 11.9 73 44-128 3-80 (225)
272 PRK07533 enoyl-(acyl carrier p 92.3 3.4 7.3E-05 35.2 12.1 78 41-129 9-98 (258)
273 PRK09424 pntA NAD(P) transhydr 91.8 0.93 2E-05 43.3 8.6 132 7-168 125-286 (509)
274 PF00145 DNA_methylase: C-5 cy 91.7 0.084 1.8E-06 46.5 1.4 65 43-129 1-71 (335)
275 COG1064 AdhP Zn-dependent alco 91.6 1.1 2.3E-05 40.6 8.3 88 40-166 165-258 (339)
276 KOG2651 rRNA adenine N-6-methy 90.8 0.43 9.4E-06 43.6 5.0 46 29-88 141-186 (476)
277 cd08283 FDH_like_1 Glutathione 90.5 2.6 5.7E-05 38.4 10.1 113 39-166 182-305 (386)
278 COG3510 CmcI Cephalosporin hyd 90.4 7.3 0.00016 32.5 11.3 105 40-166 69-179 (237)
279 COG4627 Uncharacterized protei 90.4 0.25 5.4E-06 39.6 2.7 47 114-169 42-88 (185)
280 KOG1331 Predicted methyltransf 90.3 1.1 2.4E-05 39.4 6.9 98 40-170 44-146 (293)
281 PRK06079 enoyl-(acyl carrier p 90.2 6.6 0.00014 33.3 11.8 77 41-128 6-92 (252)
282 COG1063 Tdh Threonine dehydrog 90.2 2.4 5.3E-05 38.3 9.4 98 41-169 168-271 (350)
283 PF03269 DUF268: Caenorhabditi 89.9 1.5 3.3E-05 35.4 6.8 110 42-168 2-112 (177)
284 PRK06179 short chain dehydroge 89.6 7.1 0.00015 33.2 11.6 76 42-129 4-83 (270)
285 PF11599 AviRa: RRNA methyltra 89.5 5.3 0.00011 33.9 10.0 127 21-170 31-216 (246)
286 COG5459 Predicted rRNA methyla 89.5 0.44 9.6E-06 43.1 3.9 33 31-64 104-136 (484)
287 PRK07889 enoyl-(acyl carrier p 89.0 9.9 0.00021 32.3 12.0 78 41-129 6-95 (256)
288 TIGR03451 mycoS_dep_FDH mycoth 88.9 2.5 5.3E-05 38.0 8.5 96 39-166 174-275 (358)
289 PF01555 N6_N4_Mtase: DNA meth 88.6 0.71 1.5E-05 38.2 4.5 49 120-168 1-57 (231)
290 PF00107 ADH_zinc_N: Zinc-bind 88.3 1.2 2.7E-05 33.5 5.3 86 53-170 3-92 (130)
291 PF03059 NAS: Nicotianamine sy 88.3 1.8 3.8E-05 38.1 6.8 122 43-194 122-260 (276)
292 PF05206 TRM13: Methyltransfer 87.5 1.6 3.4E-05 38.0 6.0 70 29-106 6-86 (259)
293 PRK08594 enoyl-(acyl carrier p 87.0 18 0.00039 30.8 12.8 77 41-128 6-96 (257)
294 PRK06196 oxidoreductase; Provi 86.9 8.1 0.00018 34.0 10.4 77 41-129 25-109 (315)
295 TIGR03589 PseB UDP-N-acetylglu 86.6 14 0.00031 32.7 11.8 73 42-129 4-84 (324)
296 KOG2352 Predicted spermine/spe 86.4 6.3 0.00014 37.2 9.6 106 40-168 46-162 (482)
297 PF03686 UPF0146: Uncharacteri 86.2 4.3 9.4E-05 31.3 7.1 94 42-172 14-107 (127)
298 PRK05993 short chain dehydroge 85.6 12 0.00026 32.1 10.7 76 42-129 4-86 (277)
299 TIGR02622 CDP_4_6_dhtase CDP-g 85.6 22 0.00047 31.7 12.6 73 41-128 3-84 (349)
300 PRK07806 short chain dehydroge 85.4 6.6 0.00014 32.8 8.7 75 42-128 6-93 (248)
301 KOG1709 Guanidinoacetate methy 85.3 5.3 0.00012 34.0 7.7 95 40-165 100-204 (271)
302 COG0270 Dcm Site-specific DNA 85.3 1.2 2.7E-05 39.9 4.3 68 43-129 4-77 (328)
303 cd08254 hydroxyacyl_CoA_DH 6-h 85.2 8.2 0.00018 33.7 9.5 95 39-166 163-262 (338)
304 PRK05786 fabG 3-ketoacyl-(acyl 84.8 16 0.00035 30.2 10.8 115 41-167 4-135 (238)
305 KOG3115 Methyltransferase-like 84.7 0.53 1.1E-05 39.5 1.5 33 43-88 62-94 (249)
306 PRK07578 short chain dehydroge 84.5 20 0.00043 28.9 12.0 101 44-166 2-110 (199)
307 PRK08159 enoyl-(acyl carrier p 84.0 25 0.00055 30.2 12.0 77 42-129 10-98 (272)
308 COG1255 Uncharacterized protei 84.0 10 0.00023 28.9 8.0 95 40-172 13-107 (129)
309 PLN02989 cinnamyl-alcohol dehy 84.0 26 0.00057 30.6 12.3 72 41-129 4-87 (325)
310 TIGR00675 dcm DNA-methyltransf 83.9 1.1 2.3E-05 40.1 3.3 62 45-128 1-68 (315)
311 PHA01634 hypothetical protein 83.4 2 4.4E-05 33.4 4.1 45 31-89 17-62 (156)
312 cd08281 liver_ADH_like1 Zinc-d 83.3 8.8 0.00019 34.6 9.1 94 39-166 189-289 (371)
313 PRK07326 short chain dehydroge 82.9 11 0.00024 31.1 9.0 77 41-129 5-92 (237)
314 KOG4022 Dihydropteridine reduc 82.8 21 0.00046 29.1 9.8 111 44-166 5-128 (236)
315 PRK06505 enoyl-(acyl carrier p 82.7 27 0.00058 30.0 11.6 78 41-129 6-95 (271)
316 PRK07984 enoyl-(acyl carrier p 82.5 30 0.00066 29.6 12.3 78 41-129 5-94 (262)
317 PRK07370 enoyl-(acyl carrier p 82.3 30 0.00064 29.4 11.9 78 41-129 5-97 (258)
318 PF07757 AdoMet_MTase: Predict 82.0 1.9 4E-05 32.4 3.4 22 40-61 57-78 (112)
319 PRK06603 enoyl-(acyl carrier p 81.8 31 0.00068 29.3 11.8 76 42-128 8-95 (260)
320 PRK08415 enoyl-(acyl carrier p 81.5 32 0.00069 29.7 11.6 78 41-129 4-93 (274)
321 PRK10458 DNA cytosine methylas 81.2 3.1 6.7E-05 39.3 5.4 51 42-106 88-147 (467)
322 PRK08267 short chain dehydroge 81.1 27 0.00059 29.3 10.9 74 44-129 3-87 (260)
323 PRK06398 aldose dehydrogenase; 81.0 33 0.00071 29.0 13.1 75 42-129 6-82 (258)
324 PRK08265 short chain dehydroge 80.5 34 0.00074 28.9 12.5 75 42-128 6-89 (261)
325 PRK06701 short chain dehydroge 80.1 39 0.00085 29.3 12.3 113 42-166 46-180 (290)
326 PLN02653 GDP-mannose 4,6-dehyd 80.0 35 0.00075 30.2 11.6 73 42-129 6-93 (340)
327 PLN02657 3,8-divinyl protochlo 79.4 50 0.0011 30.2 13.2 75 41-128 59-145 (390)
328 PF04445 SAM_MT: Putative SAM- 79.4 0.91 2E-05 38.9 1.1 70 40-131 72-163 (234)
329 PRK07454 short chain dehydroge 78.9 27 0.00058 29.0 10.0 76 41-128 5-92 (241)
330 cd05188 MDR Medium chain reduc 78.7 24 0.00052 29.3 9.8 96 37-166 130-231 (271)
331 PRK12428 3-alpha-hydroxysteroi 78.6 9.6 0.00021 32.0 7.2 84 78-165 9-94 (241)
332 PF01555 N6_N4_Mtase: DNA meth 78.6 2.1 4.6E-05 35.3 3.1 34 40-88 190-223 (231)
333 KOG1253 tRNA methyltransferase 78.0 2.8 6E-05 39.6 3.9 97 40-167 108-216 (525)
334 PLN02695 GDP-D-mannose-3',5'-e 78.0 12 0.00026 33.9 8.1 87 25-128 4-94 (370)
335 PRK05693 short chain dehydroge 77.7 35 0.00077 29.0 10.7 74 44-129 3-82 (274)
336 PRK07102 short chain dehydroge 77.4 34 0.00073 28.4 10.2 73 43-128 2-85 (243)
337 COG0604 Qor NADPH:quinone redu 77.1 24 0.00052 31.6 9.7 108 28-169 129-243 (326)
338 PRK08264 short chain dehydroge 76.9 16 0.00035 30.2 8.1 75 41-129 5-83 (238)
339 TIGR00497 hsdM type I restrict 75.8 10 0.00022 36.1 7.2 111 40-166 216-354 (501)
340 PF07942 N2227: N2227-like pro 75.8 12 0.00026 32.8 7.0 34 29-62 41-77 (270)
341 TIGR03201 dearomat_had 6-hydro 75.3 23 0.00051 31.5 9.1 35 39-89 164-201 (349)
342 PRK06940 short chain dehydroge 75.2 45 0.00097 28.6 10.6 72 44-129 4-86 (275)
343 PRK11524 putative methyltransf 75.2 4.5 9.8E-05 35.4 4.4 35 40-89 207-241 (284)
344 PRK09987 dTDP-4-dehydrorhamnos 74.9 57 0.0012 28.4 11.6 63 44-129 2-64 (299)
345 PRK08219 short chain dehydroge 74.9 44 0.00095 27.2 10.2 71 43-128 4-80 (227)
346 PRK06997 enoyl-(acyl carrier p 74.7 52 0.0011 27.9 11.3 78 41-129 5-94 (260)
347 TIGR01472 gmd GDP-mannose 4,6- 74.6 45 0.00098 29.5 10.8 66 50-129 7-88 (343)
348 PF01861 DUF43: Protein of unk 74.5 19 0.00041 31.0 7.8 95 41-168 44-149 (243)
349 PF01358 PARP_regulatory: Poly 74.5 37 0.0008 30.0 9.6 104 43-164 60-170 (294)
350 PF02254 TrkA_N: TrkA-N domain 74.4 3.4 7.5E-05 30.5 3.0 90 50-169 4-98 (116)
351 PRK06953 short chain dehydroge 74.2 47 0.001 27.2 12.1 73 44-128 3-79 (222)
352 PRK01747 mnmC bifunctional tRN 73.8 19 0.00041 35.5 8.8 108 41-165 57-204 (662)
353 PF07091 FmrO: Ribosomal RNA m 73.7 3.9 8.4E-05 35.4 3.4 40 36-88 100-139 (251)
354 KOG0822 Protein kinase inhibit 73.3 9.4 0.0002 36.6 6.0 95 42-164 368-475 (649)
355 PLN02586 probable cinnamyl alc 73.2 26 0.00057 31.5 9.0 92 39-166 181-277 (360)
356 cd05278 FDH_like Formaldehyde 73.1 35 0.00077 29.9 9.7 93 39-165 165-265 (347)
357 PRK06182 short chain dehydroge 72.8 19 0.0004 30.7 7.6 76 42-129 3-84 (273)
358 PRK08324 short chain dehydroge 72.6 27 0.00059 34.5 9.6 77 41-129 421-508 (681)
359 PRK15181 Vi polysaccharide bio 72.5 59 0.0013 29.0 11.0 72 41-129 14-100 (348)
360 PLN02240 UDP-glucose 4-epimera 72.5 68 0.0015 28.3 12.8 72 42-128 5-90 (352)
361 PRK06181 short chain dehydroge 72.2 58 0.0013 27.3 11.1 74 43-128 2-87 (263)
362 cd08239 THR_DH_like L-threonin 72.0 27 0.00058 30.8 8.6 95 40-166 162-261 (339)
363 PLN02740 Alcohol dehydrogenase 72.0 36 0.00079 30.8 9.7 95 39-166 196-299 (381)
364 KOG1227 Putative methyltransfe 71.8 1.6 3.5E-05 38.7 0.7 85 40-162 193-290 (351)
365 PLN02572 UDP-sulfoquinovose sy 71.2 66 0.0014 30.0 11.4 72 42-128 47-145 (442)
366 PRK06523 short chain dehydroge 71.0 61 0.0013 27.1 11.1 76 41-128 8-86 (260)
367 PHA03108 poly(A) polymerase sm 70.5 70 0.0015 28.2 10.3 75 42-128 61-140 (300)
368 PRK07904 short chain dehydroge 70.4 26 0.00057 29.6 7.9 77 41-128 7-96 (253)
369 PLN03209 translocon at the inn 70.4 75 0.0016 31.0 11.6 71 41-128 79-168 (576)
370 PF12803 G-7-MTase: mRNA (guan 70.3 7.5 0.00016 35.0 4.6 50 13-62 271-321 (324)
371 COG1748 LYS9 Saccharopine dehy 70.0 16 0.00034 33.8 6.6 70 43-129 2-78 (389)
372 PF02005 TRM: N2,N2-dimethylgu 69.5 6.3 0.00014 36.2 4.1 93 41-167 49-154 (377)
373 KOG2078 tRNA modification enzy 69.4 1.8 3.9E-05 40.2 0.5 37 38-89 246-282 (495)
374 PLN02427 UDP-apiose/xylose syn 69.2 88 0.0019 28.2 11.7 71 42-128 14-95 (386)
375 PRK05884 short chain dehydroge 69.1 63 0.0014 26.7 9.9 72 44-128 2-78 (223)
376 PRK07023 short chain dehydroge 69.1 65 0.0014 26.7 11.1 74 43-128 2-86 (243)
377 cd08230 glucose_DH Glucose deh 68.5 25 0.00055 31.3 7.8 88 40-166 171-268 (355)
378 PLN02827 Alcohol dehydrogenase 68.3 47 0.001 30.1 9.5 96 39-165 191-293 (378)
379 TIGR03366 HpnZ_proposed putati 68.2 18 0.00038 31.2 6.5 92 40-166 119-217 (280)
380 PLN03154 putative allyl alcoho 68.2 43 0.00094 29.9 9.2 94 39-166 156-257 (348)
381 KOG1562 Spermidine synthase [A 67.9 87 0.0019 28.0 10.5 144 41-213 121-287 (337)
382 KOG2920 Predicted methyltransf 67.5 7 0.00015 34.4 3.7 37 38-88 113-149 (282)
383 PRK06101 short chain dehydroge 67.4 71 0.0015 26.5 11.9 72 44-128 3-80 (240)
384 TIGR01202 bchC 2-desacetyl-2-h 67.3 18 0.00038 31.8 6.4 18 149-166 213-230 (308)
385 TIGR00561 pntA NAD(P) transhyd 67.2 45 0.00098 32.0 9.3 64 7-89 124-198 (511)
386 PRK12481 2-deoxy-D-gluconate 3 66.9 76 0.0016 26.6 11.1 77 41-129 7-93 (251)
387 PRK07523 gluconate 5-dehydroge 66.6 52 0.0011 27.5 9.0 77 41-129 9-97 (255)
388 cd08237 ribitol-5-phosphate_DH 66.5 27 0.00058 31.1 7.4 92 40-166 162-255 (341)
389 PRK09880 L-idonate 5-dehydroge 66.4 36 0.00079 30.2 8.3 94 40-166 168-265 (343)
390 PRK08220 2,3-dihydroxybenzoate 66.4 75 0.0016 26.3 12.5 76 42-129 8-86 (252)
391 PLN02260 probable rhamnose bio 66.0 1.1E+02 0.0023 30.2 12.1 75 42-129 6-90 (668)
392 PF01795 Methyltransf_5: MraW 65.9 5.5 0.00012 35.6 2.8 37 146-182 220-256 (310)
393 PRK13699 putative methylase; P 65.6 7.6 0.00016 33.0 3.5 34 40-88 162-195 (227)
394 KOG0023 Alcohol dehydrogenase, 65.4 50 0.0011 29.9 8.6 92 40-166 180-278 (360)
395 PRK07067 sorbitol dehydrogenas 65.1 82 0.0018 26.3 11.1 75 42-128 6-89 (257)
396 COG2910 Putative NADH-flavin r 64.9 25 0.00053 29.3 6.1 64 50-129 7-72 (211)
397 TIGR02825 B4_12hDH leukotriene 64.6 31 0.00066 30.2 7.4 92 39-165 136-235 (325)
398 KOG3987 Uncharacterized conser 64.6 5.5 0.00012 33.7 2.4 32 42-88 113-144 (288)
399 TIGR01181 dTDP_gluc_dehyt dTDP 64.1 74 0.0016 27.2 9.7 67 51-129 7-83 (317)
400 PRK12939 short chain dehydroge 63.5 83 0.0018 25.9 11.0 75 42-128 7-93 (250)
401 PRK08339 short chain dehydroge 63.3 93 0.002 26.4 11.0 76 41-128 7-94 (263)
402 KOG4058 Uncharacterized conser 63.2 3.9 8.6E-05 32.7 1.2 46 30-89 59-106 (199)
403 PRK06128 oxidoreductase; Provi 63.2 1E+02 0.0022 26.7 12.7 112 42-165 55-189 (300)
404 TIGR02818 adh_III_F_hyde S-(hy 63.0 58 0.0013 29.3 9.0 94 39-166 183-286 (368)
405 PRK07814 short chain dehydroge 62.8 93 0.002 26.2 10.0 76 41-128 9-96 (263)
406 PLN02253 xanthoxin dehydrogena 62.6 97 0.0021 26.3 12.4 76 42-129 18-104 (280)
407 cd08261 Zn_ADH7 Alcohol dehydr 62.4 66 0.0014 28.2 9.2 95 39-165 157-256 (337)
408 KOG0022 Alcohol dehydrogenase, 62.1 31 0.00067 31.1 6.7 96 40-166 191-293 (375)
409 PF06016 Reovirus_L2: Reovirus 61.8 17 0.00037 38.3 5.7 65 41-127 822-891 (1289)
410 PF04816 DUF633: Family of unk 61.4 7.9 0.00017 32.4 2.8 87 45-166 1-100 (205)
411 PRK12829 short chain dehydroge 61.4 29 0.00064 29.0 6.5 77 41-129 10-96 (264)
412 PRK07576 short chain dehydroge 61.4 1E+02 0.0022 26.1 11.8 76 41-128 8-95 (264)
413 PLN02178 cinnamyl-alcohol dehy 61.3 30 0.00066 31.4 6.9 91 40-166 177-272 (375)
414 PRK06484 short chain dehydroge 61.3 1.4E+02 0.003 28.1 11.6 76 42-129 269-353 (520)
415 PRK11908 NAD-dependent epimera 61.2 1.2E+02 0.0026 26.9 11.3 69 44-128 3-77 (347)
416 PRK07985 oxidoreductase; Provi 61.2 1.1E+02 0.0024 26.5 12.8 75 42-128 49-137 (294)
417 PRK12384 sorbitol-6-phosphate 60.3 1E+02 0.0022 25.8 10.9 74 43-128 3-90 (259)
418 PRK06114 short chain dehydroge 60.2 50 0.0011 27.7 7.7 76 41-128 7-95 (254)
419 PRK08251 short chain dehydroge 59.9 33 0.00071 28.5 6.5 76 42-129 2-91 (248)
420 TIGR03466 HpnA hopanoid-associ 59.3 1.2E+02 0.0025 26.2 10.1 68 44-128 2-73 (328)
421 PRK08263 short chain dehydroge 59.1 1.1E+02 0.0024 25.9 10.3 76 42-129 3-87 (275)
422 COG1062 AdhC Zn-dependent alco 59.1 36 0.00078 31.0 6.7 97 40-168 184-286 (366)
423 cd08236 sugar_DH NAD(P)-depend 58.7 64 0.0014 28.3 8.4 92 39-166 157-257 (343)
424 KOG2782 Putative SAM dependent 58.6 4.5 9.8E-05 34.4 0.9 74 40-128 42-127 (303)
425 cd08278 benzyl_alcohol_DH Benz 58.0 94 0.002 27.8 9.5 92 39-165 184-283 (365)
426 PRK06171 sorbitol-6-phosphate 57.9 75 0.0016 26.7 8.5 75 42-128 9-86 (266)
427 PRK10675 UDP-galactose-4-epime 57.8 1.3E+02 0.0028 26.3 12.3 70 44-128 2-82 (338)
428 PF01073 3Beta_HSD: 3-beta hyd 57.8 97 0.0021 26.9 9.2 65 51-129 5-76 (280)
429 PRK05872 short chain dehydroge 57.7 1.3E+02 0.0027 26.1 11.9 77 41-129 8-95 (296)
430 PF02636 Methyltransf_28: Puta 57.3 35 0.00076 29.1 6.3 43 42-89 19-61 (252)
431 PRK08340 glucose-1-dehydrogena 57.0 1.2E+02 0.0025 25.5 10.8 73 44-128 2-85 (259)
432 PF05971 Methyltransf_10: Prot 57.0 13 0.00027 33.2 3.4 69 42-130 103-188 (299)
433 PRK06500 short chain dehydroge 56.6 1.1E+02 0.0024 25.1 10.3 76 42-129 6-90 (249)
434 PRK12746 short chain dehydroge 56.5 1.2E+02 0.0025 25.3 11.8 113 42-166 6-145 (254)
435 PLN02668 indole-3-acetate carb 56.1 9.7 0.00021 35.1 2.7 18 42-59 64-81 (386)
436 COG0451 WcaG Nucleoside-diphos 56.0 1.3E+02 0.0028 25.7 11.1 69 45-130 3-75 (314)
437 cd08295 double_bond_reductase_ 55.8 83 0.0018 27.7 8.7 93 39-166 149-250 (338)
438 PRK05717 oxidoreductase; Valid 55.5 1.2E+02 0.0026 25.2 11.9 77 41-129 9-94 (255)
439 cd05285 sorbitol_DH Sorbitol d 55.4 94 0.002 27.3 9.0 96 39-166 160-264 (343)
440 PRK08125 bifunctional UDP-gluc 55.3 2E+02 0.0043 28.4 11.9 73 40-127 313-390 (660)
441 PRK08213 gluconate 5-dehydroge 55.3 1.2E+02 0.0027 25.2 11.0 76 41-128 11-98 (259)
442 PRK09135 pteridine reductase; 55.1 58 0.0013 26.8 7.2 76 41-128 5-94 (249)
443 CHL00194 ycf39 Ycf39; Provisio 55.0 53 0.0011 28.8 7.2 66 44-126 2-71 (317)
444 cd08285 NADP_ADH NADP(H)-depen 54.6 89 0.0019 27.6 8.7 93 39-165 164-264 (351)
445 PRK05855 short chain dehydroge 54.3 98 0.0021 29.2 9.4 76 42-129 315-402 (582)
446 PRK06125 short chain dehydroge 53.8 1.3E+02 0.0028 25.1 10.9 73 42-128 7-90 (259)
447 cd08300 alcohol_DH_class_III c 53.8 1.3E+02 0.0028 26.9 9.7 95 39-166 184-287 (368)
448 PLN02896 cinnamyl-alcohol dehy 53.6 1.6E+02 0.0035 26.1 11.5 72 41-129 9-89 (353)
449 PRK12828 short chain dehydroge 53.4 54 0.0012 26.8 6.7 75 42-128 7-91 (239)
450 KOG2352 Predicted spermine/spe 53.2 35 0.00076 32.4 5.8 134 41-190 295-441 (482)
451 PRK12744 short chain dehydroge 53.2 1.3E+02 0.0029 25.0 12.5 76 42-129 8-99 (257)
452 PRK06483 dihydromonapterin red 53.2 1.3E+02 0.0027 24.7 12.2 74 43-128 3-83 (236)
453 PRK12745 3-ketoacyl-(acyl-carr 53.2 65 0.0014 26.8 7.2 74 43-128 3-89 (256)
454 KOG1197 Predicted quinone oxid 52.9 1.2E+02 0.0025 26.8 8.5 96 39-165 144-243 (336)
455 PRK12429 3-hydroxybutyrate deh 52.6 1.3E+02 0.0029 24.8 10.6 75 42-128 4-90 (258)
456 PRK06949 short chain dehydroge 52.4 47 0.001 27.7 6.2 76 41-128 8-95 (258)
457 PRK08261 fabG 3-ketoacyl-(acyl 51.8 2E+02 0.0043 26.6 11.3 76 41-128 209-293 (450)
458 PRK06197 short chain dehydroge 51.6 1.6E+02 0.0035 25.4 9.8 76 41-128 15-104 (306)
459 PRK07666 fabG 3-ketoacyl-(acyl 51.6 1.4E+02 0.0029 24.6 9.6 76 42-129 7-94 (239)
460 PF06859 Bin3: Bicoid-interact 51.4 12 0.00026 28.1 2.1 22 146-167 23-44 (110)
461 PLN02214 cinnamoyl-CoA reducta 51.1 1.8E+02 0.0039 25.8 12.3 72 41-129 9-91 (342)
462 PRK05867 short chain dehydroge 50.9 1.4E+02 0.0031 24.7 10.3 77 41-129 8-96 (253)
463 KOG3924 Putative protein methy 50.9 39 0.00084 31.3 5.6 95 40-164 191-305 (419)
464 PRK08217 fabG 3-ketoacyl-(acyl 50.8 82 0.0018 25.9 7.5 76 41-128 4-91 (253)
465 PRK03659 glutathione-regulated 50.5 75 0.0016 31.1 8.0 66 44-126 402-471 (601)
466 PF05430 Methyltransf_30: S-ad 50.3 20 0.00043 27.5 3.2 70 96-185 34-105 (124)
467 PRK09072 short chain dehydroge 50.1 1.5E+02 0.0033 24.8 11.8 77 41-129 4-90 (263)
468 PRK07424 bifunctional sterol d 50.1 2.2E+02 0.0047 26.5 10.6 72 41-129 177-255 (406)
469 PRK13394 3-hydroxybutyrate deh 50.0 1.5E+02 0.0032 24.6 10.6 76 42-129 7-94 (262)
470 PRK03525 crotonobetainyl-CoA:c 49.7 71 0.0015 29.6 7.4 70 41-126 13-95 (405)
471 PRK07062 short chain dehydroge 49.5 1.6E+02 0.0034 24.7 10.1 76 41-128 7-96 (265)
472 PRK06484 short chain dehydroge 49.2 2.3E+02 0.005 26.6 12.0 76 41-128 4-88 (520)
473 PRK07109 short chain dehydroge 48.9 1.9E+02 0.0042 25.6 10.6 76 42-129 8-95 (334)
474 PF13561 adh_short_C2: Enoyl-( 48.9 23 0.00049 29.6 3.7 108 49-168 1-134 (241)
475 PRK06057 short chain dehydroge 48.8 57 0.0012 27.3 6.2 76 41-128 6-88 (255)
476 PF03492 Methyltransf_7: SAM d 48.6 17 0.00036 32.8 3.0 22 40-61 15-36 (334)
477 PRK07024 short chain dehydroge 48.5 1.3E+02 0.0029 25.1 8.5 75 43-129 3-88 (257)
478 KOG1501 Arginine N-methyltrans 48.4 19 0.00042 33.9 3.3 31 43-87 68-98 (636)
479 PLN02662 cinnamyl-alcohol dehy 48.1 1.8E+02 0.0039 25.1 12.6 71 42-129 4-86 (322)
480 PF10237 N6-adenineMlase: Prob 48.0 1.4E+02 0.0031 23.9 11.7 124 41-197 25-149 (162)
481 PRK08690 enoyl-(acyl carrier p 47.6 93 0.002 26.3 7.4 78 41-129 5-94 (261)
482 PRK05854 short chain dehydroge 47.6 1.9E+02 0.0042 25.2 10.3 75 42-128 14-102 (313)
483 COG0027 PurT Formate-dependent 47.4 88 0.0019 28.3 7.1 69 41-126 11-82 (394)
484 cd08277 liver_alcohol_DH_like 47.0 1.5E+02 0.0032 26.5 8.9 95 39-166 182-285 (365)
485 PRK12748 3-ketoacyl-(acyl-carr 47.0 1.7E+02 0.0037 24.4 11.6 76 42-128 5-104 (256)
486 PRK07774 short chain dehydroge 46.9 77 0.0017 26.2 6.7 75 42-128 6-92 (250)
487 PRK10217 dTDP-glucose 4,6-dehy 45.7 2.1E+02 0.0046 25.2 11.7 71 44-129 3-84 (355)
488 cd08293 PTGR2 Prostaglandin re 45.2 1.8E+02 0.0039 25.4 9.1 92 39-165 150-252 (345)
489 PRK10084 dTDP-glucose 4,6 dehy 45.1 2.2E+02 0.0047 25.1 11.1 72 44-129 2-83 (352)
490 KOG3201 Uncharacterized conser 44.8 45 0.00098 27.2 4.5 37 118-165 102-138 (201)
491 PRK06194 hypothetical protein; 44.8 1.9E+02 0.0042 24.5 11.8 76 42-129 6-93 (287)
492 cd08294 leukotriene_B4_DH_like 44.7 1.5E+02 0.0033 25.5 8.5 92 39-165 141-239 (329)
493 PRK05396 tdh L-threonine 3-deh 44.6 1.5E+02 0.0032 26.0 8.5 95 40-167 162-263 (341)
494 cd08238 sorbose_phosphate_red 44.6 2.1E+02 0.0046 26.1 9.7 99 39-166 173-287 (410)
495 cd08233 butanediol_DH_like (2R 44.5 2.1E+02 0.0045 25.2 9.4 97 39-166 170-271 (351)
496 PRK10669 putative cation:proto 44.4 30 0.00064 33.4 4.1 61 50-125 423-487 (558)
497 TIGR02822 adh_fam_2 zinc-bindi 44.2 1.1E+02 0.0024 27.0 7.6 18 149-166 236-253 (329)
498 KOG1201 Hydroxysteroid 17-beta 44.2 2.3E+02 0.0051 25.2 12.1 77 41-129 37-124 (300)
499 PRK10537 voltage-gated potassi 43.7 1.4E+02 0.003 27.7 8.2 97 43-170 241-339 (393)
500 PRK06463 fabG 3-ketoacyl-(acyl 43.4 1.9E+02 0.0042 24.0 10.6 76 42-129 7-89 (255)
No 1
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=100.00 E-value=1.6e-51 Score=339.23 Aligned_cols=219 Identities=75% Similarity=1.142 Sum_probs=203.2
Q ss_pred CCCCCCCCCChhHHHHHHhccchhhhhhHHhhhhhcCcccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCe
Q 025715 1 MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPL 80 (249)
Q Consensus 1 ~~~~~~~~~d~~~~~a~~~~~~~ra~~KL~ei~~~~~~~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~ 80 (249)
|||+|++++|.||++||++|||.|++|||++|++.|++|+.-.+|+|||++||+||+++++++..+-.. .+..+.+
T Consensus 1 MGktskDKRDiYYRlAKe~gwRARSAFKLlqideef~i~~gv~rvVDLCAAPGSWSQvlSrkL~~~~~~----~~~~~~k 76 (294)
T KOG1099|consen 1 MGKTSKDKRDIYYRLAKENGWRARSAFKLLQIDEEFQIFEGVKRVVDLCAAPGSWSQVLSRKLYKPLPS----SGERDKK 76 (294)
T ss_pred CCCccchhhHHHHHHHHhccchHHhHHHHhhhhhhhhHHhhhhHHhhhhcCCCcHHHHHHHHHhccCCC----cchhhcc
Confidence 999999999999999999999999999999999999999999999999999999999999988632111 1112236
Q ss_pred EEEecCCCCCCCCCceEeecCCCChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCC
Q 025715 81 IVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEG 160 (249)
Q Consensus 81 vvavDi~~~~~~~~v~~~~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~g 160 (249)
|++||+++|++++||.-+++||++..+...|.++|++++.|+|+|||+|+++|.++.|++.+.+|+.++|..+..+||||
T Consensus 77 IVaVDLQ~MaPI~GV~qlq~DIT~~stae~Ii~hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~G 156 (294)
T KOG1099|consen 77 IVAVDLQPMAPIEGVIQLQGDITSASTAEAIIEHFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPG 156 (294)
T ss_pred EEEEecccCCccCceEEeecccCCHhHHHHHHHHhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEEecCCCHHHHHHHHhcCCCeeEEecCCCCCCCCceEEEEEeeccCCCCCCchhhhHh
Q 025715 161 GKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAVCENYFPPEGFNPKDLHRL 223 (249)
Q Consensus 161 G~lv~k~~~~~~~~~l~~~l~~~f~~v~~~kP~~sr~~s~E~y~v~~g~~~~~~~~~~~~~~~ 223 (249)
|+||-|+|++.++..+...|+.+|+.|...||.+||..|.|.|+||.||-.+..+.|.+-.-|
T Consensus 157 g~FVaKifRg~~tslLysql~~ff~kv~~~KPrsSR~sSiEaFvvC~~~~pp~g~~P~~~~~~ 219 (294)
T KOG1099|consen 157 GSFVAKIFRGRDTSLLYSQLRKFFKKVTCAKPRSSRNSSIEAFVVCLGYCPPEGFIPDLGTPL 219 (294)
T ss_pred CeeehhhhccCchHHHHHHHHHHhhceeeecCCccccccceeeeeecccCCccCCCCCCCCcc
Confidence 999999999999999999999999999999999999999999999999999999999764333
No 2
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.2e-48 Score=320.92 Aligned_cols=195 Identities=43% Similarity=0.659 Sum_probs=188.6
Q ss_pred CCCCChhHHHHHHhccchhhhhhHHhhhhhcCcccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEec
Q 025715 6 RDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAID 85 (249)
Q Consensus 6 ~~~~d~~~~~a~~~~~~~ra~~KL~ei~~~~~~~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavD 85 (249)
++++|+||++|+++||++||+|||.||+++|+++++|++|+||||+||+|+|+++++++ ..+.|+|+|
T Consensus 10 ~~~~D~Y~~~Ak~~gyRSRAa~KL~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~------------~~~~ivavD 77 (205)
T COG0293 10 EHLRDPYYKKAKKEGYRSRAAYKLLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLG------------AGGKIVAVD 77 (205)
T ss_pred HhhcCHHHHHHhhccccchHHHHHHHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhC------------CCCcEEEEE
Confidence 58999999999999999999999999999999999999999999999999999999987 457799999
Q ss_pred CCCCCCCCCceEeecCCCChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEE
Q 025715 86 LQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIA 165 (249)
Q Consensus 86 i~~~~~~~~v~~~~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~ 165 (249)
++|+.++++|.++++|+++.++...|...+....+|+|+|||+|+++|.++.|+.+++.|+..++..|..+|+|||.|++
T Consensus 78 i~p~~~~~~V~~iq~d~~~~~~~~~l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~ 157 (205)
T COG0293 78 ILPMKPIPGVIFLQGDITDEDTLEKLLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVA 157 (205)
T ss_pred CcccccCCCceEEeeeccCccHHHHHHHHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEE
Confidence 99999999999999999999999999999988789999999999999999999999999999999999999999999999
Q ss_pred EEecCCCHHHHHHHHhcCCCeeEEecCCCCCCCCceEEEEEeeccCC
Q 025715 166 KIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAVCENYFPP 212 (249)
Q Consensus 166 k~~~~~~~~~l~~~l~~~f~~v~~~kP~~sr~~s~E~y~v~~g~~~~ 212 (249)
|+|++++.+.+++.++++|+.|...||.+||..|+|+|++|.||+++
T Consensus 158 K~fqg~~~~~~l~~~~~~F~~v~~~KP~aSR~~S~E~y~v~~~~~~~ 204 (205)
T COG0293 158 KVFQGEDFEDLLKALRRLFRKVKIFKPKASRKRSREIYLVAKGFKGK 204 (205)
T ss_pred EEEeCCCHHHHHHHHHHhhceeEEecCccccCCCceEEEEEeccccC
Confidence 99999999999999999999999999999999999999999999875
No 3
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=1.2e-47 Score=307.53 Aligned_cols=197 Identities=32% Similarity=0.558 Sum_probs=190.0
Q ss_pred CCCCChhHHHHHHhccchhhhhhHHhhhhhcCcccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEec
Q 025715 6 RDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAID 85 (249)
Q Consensus 6 ~~~~d~~~~~a~~~~~~~ra~~KL~ei~~~~~~~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavD 85 (249)
|+.+|||+++||...|++||+|||+||+++|++++|+.+|||+||+||+|+|.+.++.+ +.+.|.|||
T Consensus 34 Rql~Dpy~kkAkv~NyR~RsAFKLiEindKy~~l~p~~~VlD~G~APGsWsQVavqr~~------------p~g~v~gVD 101 (232)
T KOG4589|consen 34 RQLKDPYVKKAKVQNYRSRSAFKLIEINDKYRFLRPEDTVLDCGAAPGSWSQVAVQRVN------------PNGMVLGVD 101 (232)
T ss_pred HhccCHHHHHHHHhhhhhhhhhhheeehhhccccCCCCEEEEccCCCChHHHHHHHhhC------------CCceEEEEe
Confidence 68899999999999999999999999999999999999999999999999999999986 679999999
Q ss_pred CCCCCCCCCceEeec-CCCChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEE
Q 025715 86 LQPMAPIEGVIQVQG-DITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFI 164 (249)
Q Consensus 86 i~~~~~~~~v~~~~g-Di~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv 164 (249)
+.+..+.+|+.++++ |++++.+...|.+.+++..+|+|+|||.|+.+|.+..|+..+++|+.+++..|...++|+|+|+
T Consensus 102 llh~~p~~Ga~~i~~~dvtdp~~~~ki~e~lp~r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fv 181 (232)
T KOG4589|consen 102 LLHIEPPEGATIIQGNDVTDPETYRKIFEALPNRPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFV 181 (232)
T ss_pred eeeccCCCCcccccccccCCHHHHHHHHHhCCCCcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEE
Confidence 999999999999998 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCHHHHHHHHhcCCCeeEEecCCCCCCCCceEEEEEeeccCCCC
Q 025715 165 AKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAVCENYFPPEG 214 (249)
Q Consensus 165 ~k~~~~~~~~~l~~~l~~~f~~v~~~kP~~sr~~s~E~y~v~~g~~~~~~ 214 (249)
||++.+++...+...|...|..|+.+||.+||..|+|.|++|+.|+++.+
T Consensus 182 cK~w~g~e~~~l~r~l~~~f~~Vk~vKP~Asr~eS~E~y~v~~~~k~~~d 231 (232)
T KOG4589|consen 182 CKLWDGSEEALLQRRLQAVFTNVKKVKPDASRDESAETYLVCLNFKGNVD 231 (232)
T ss_pred EEEecCCchHHHHHHHHHHhhhcEeeCCccccccccceeeeeeeccCcCC
Confidence 99999999999999999999999999999999999999999999998754
No 4
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=100.00 E-value=1.7e-40 Score=279.51 Aligned_cols=194 Identities=31% Similarity=0.481 Sum_probs=176.5
Q ss_pred CCCCChhHHHHHHhccchhhhhhHHhhhhhcCcccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEec
Q 025715 6 RDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAID 85 (249)
Q Consensus 6 ~~~~d~~~~~a~~~~~~~ra~~KL~ei~~~~~~~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavD 85 (249)
++.+|+||++++..+|++|++|||.||+++|++++++.+|||||||||+|+++++++.+ +.+.|+|||
T Consensus 16 ~~~~d~~~~~~~~~~~~~r~~~kl~~~~~~~~~~~~~~~VLDlG~GtG~~t~~l~~~~~------------~~~~V~aVD 83 (209)
T PRK11188 16 EHFSDKYVQQAQKKGLRSRAWFKLDEIQQSDKLFKPGMTVVDLGAAPGGWSQYAVTQIG------------DKGRVIACD 83 (209)
T ss_pred HhhcCHHHHHHhhcCCchhHHHhhHHHHHHhccCCCCCEEEEEcccCCHHHHHHHHHcC------------CCceEEEEe
Confidence 57789999999999999999999999999999999999999999999999999999875 457999999
Q ss_pred CCCCCCCCCceEeecCCCChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEE
Q 025715 86 LQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIA 165 (249)
Q Consensus 86 i~~~~~~~~v~~~~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~ 165 (249)
++++...++++++++|+++.+.++++.+.+..++||+|+||+++.+.|.+..+......+...++..+.++|+|||.|++
T Consensus 84 i~~~~~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi 163 (209)
T PRK11188 84 ILPMDPIVGVDFLQGDFRDELVLKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVV 163 (209)
T ss_pred cccccCCCCcEEEecCCCChHHHHHHHHHhCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 99988888999999999998877777777777899999999998887765555555555567899999999999999999
Q ss_pred EEecCCCHHHHHHHHhcCCCeeEEecCCCCCCCCceEEEEEeeccC
Q 025715 166 KIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAVCENYFP 211 (249)
Q Consensus 166 k~~~~~~~~~l~~~l~~~f~~v~~~kP~~sr~~s~E~y~v~~g~~~ 211 (249)
+++.++++.+++..++.+|+.+.++||.+||..|+|+|+||+||++
T Consensus 164 ~~~~~~~~~~~l~~l~~~f~~v~~~Kp~ssr~~s~e~~~~~~~~~~ 209 (209)
T PRK11188 164 KVFQGEGFDEYLREIRSLFTKVKVRKPDSSRARSREVYIVATGRKL 209 (209)
T ss_pred EEecCcCHHHHHHHHHhCceEEEEECCccccccCceeEEEeecccC
Confidence 9999999999999999999999999999999999999999999974
No 5
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=100.00 E-value=8.9e-42 Score=313.29 Aligned_cols=214 Identities=40% Similarity=0.641 Sum_probs=200.4
Q ss_pred CCC---CCCCCCChhHHHHHHhccchhhhhhHHhhhhhcCcccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCC
Q 025715 1 MGK---ASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGD 77 (249)
Q Consensus 1 ~~~---~~~~~~d~~~~~a~~~~~~~ra~~KL~ei~~~~~~~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~ 77 (249)
||| +...++|.||++|++.||++||+|||+||+.+|+|+.++..||||||+||+|.|++++.++ .
T Consensus 1 MGKk~~~gk~r~Dk~Y~lAke~GyrsRsaFKLlQln~ky~fl~~a~~vlDLcaAPG~W~QVA~q~~p------------v 68 (780)
T KOG1098|consen 1 MGKKKKSGKGRLDKYYRLAKELGYRSRSAFKLLQLNKKYKFLEKAHVVLDLCAAPGGWLQVASQSMP------------V 68 (780)
T ss_pred CCccccCCCccchHHHHHHHHhchhHHHHHHHHHHHHHhccccccchheeeccCCcHHHHHHHHhCC------------C
Confidence 888 3379999999999999999999999999999999999999999999999999999999998 5
Q ss_pred CCeEEEecCCCCCCCCCceEeecCCCChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhc
Q 025715 78 LPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVL 157 (249)
Q Consensus 78 ~~~vvavDi~~~~~~~~v~~~~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~L 157 (249)
++.|+|||+-|+.+++++..++.||+...+...+...+..-+.|+|++||+|++.|.|..+.+.+..|...++.+|...|
T Consensus 69 ~slivGvDl~pikp~~~c~t~v~dIttd~cr~~l~k~l~t~~advVLhDgapnVg~~w~~DA~~q~~L~l~al~LA~~~l 148 (780)
T KOG1098|consen 69 GSLIVGVDLVPIKPIPNCDTLVEDITTDECRSKLRKILKTWKADVVLHDGAPNVGGNWVQDAFQQACLTLRALKLATEFL 148 (780)
T ss_pred CceEEEeeeeecccCCccchhhhhhhHHHHHHHHHHHHHhCCCcEEeecCCCccchhHHHHHHHhhHHHHHHHHHHHHHH
Confidence 68999999999999999988999999988877776666666789999999999999999999999999999999999999
Q ss_pred cCCCEEEEEEecCCCHHHHHHHHhcCCCeeEEecCCCCCCCCceEEEEEeeccCCCCCCchhhhHhHHh
Q 025715 158 KEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAVCENYFPPEGFNPKDLHRLLEK 226 (249)
Q Consensus 158 k~gG~lv~k~~~~~~~~~l~~~l~~~f~~v~~~kP~~sr~~s~E~y~v~~g~~~~~~~~~~~~~~~~~~ 226 (249)
+.||+||.++|++.++..+++.+.+.|.+|...||.+||..|.|+|+||.||..+...+|++++-.+-+
T Consensus 149 ~~~g~fvtkvfrs~dy~~ll~v~~qLf~kv~~tkp~asr~~saeif~vc~~~l~P~~~dp~~ld~~~vf 217 (780)
T KOG1098|consen 149 AKGGTFVTKVFRSEDYNGLLRVFGQLFKKVEATKPAASRSESAEIFVVCLGYLAPKKVDPRLLDPKLVF 217 (780)
T ss_pred HhcCccccccccCCcchHHHHHHHHHHHHHHhcCChhhhhhccceeeeeecccCccccCccccCHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999877443
No 6
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=100.00 E-value=2.5e-39 Score=266.32 Aligned_cols=177 Identities=42% Similarity=0.676 Sum_probs=151.6
Q ss_pred cchhhhhhHHhhhhhcCcccCC--CeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCCCCCceEe
Q 025715 21 WRARSAFKLLQIDEEFNIFEGV--KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQV 98 (249)
Q Consensus 21 ~~~ra~~KL~ei~~~~~~~~~g--~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~~~~v~~~ 98 (249)
|++||++||.||+++|++++++ .+||||||+||||+++++++.+ +.++|+|||+.++.+.+++.++
T Consensus 1 yvsRa~~KL~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~------------~~~~v~avDl~~~~~~~~~~~i 68 (181)
T PF01728_consen 1 YVSRAAFKLYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGG------------PAGRVVAVDLGPMDPLQNVSFI 68 (181)
T ss_dssp SSSTHHHHHHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTT------------TEEEEEEEESSSTGS-TTEEBT
T ss_pred CCCHHHHHHHHHHHHCCCCCcccccEEEEcCCcccceeeeeeeccc------------ccceEEEEeccccccccceeee
Confidence 7999999999999999988664 9999999999999999999873 3589999999999888999999
Q ss_pred ecCCCChhhHHHHHHhcCC--CcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCCCHHHH
Q 025715 99 QGDITNARTAEVVIRHFDG--CKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLL 176 (249)
Q Consensus 99 ~gDi~~~~~~~~i~~~~~~--~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~~~l 176 (249)
++|+++..+.+.+.+.+.. +.+|+|+||++++++|.++.|+..+.+++..++..|...|+|||+||+|++..+....+
T Consensus 69 ~~d~~~~~~~~~i~~~~~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~~~~~ 148 (181)
T PF01728_consen 69 QGDITNPENIKDIRKLLPESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPEIEEL 148 (181)
T ss_dssp TGGGEEEEHSHHGGGSHGTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTTSHHH
T ss_pred ecccchhhHHHhhhhhccccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCccHHHH
Confidence 9999998877766665543 68999999999999999999999999999999999999999999999999987666689
Q ss_pred HHHHhcCCCeeEEecCCCCCCCCceEEEEEeec
Q 025715 177 YCQLKLFFPVVTFAKPKSSRNSSIEAFAVCENY 209 (249)
Q Consensus 177 ~~~l~~~f~~v~~~kP~~sr~~s~E~y~v~~g~ 209 (249)
++.++.+|++|.++||.+||+.|+|.|+||+||
T Consensus 149 ~~~l~~~F~~v~~~Kp~~sr~~s~E~Ylv~~~f 181 (181)
T PF01728_consen 149 IYLLKRCFSKVKIVKPPSSRSESSEEYLVCRGF 181 (181)
T ss_dssp HHHHHHHHHHEEEEE-TTSBTTCBEEEEESEEE
T ss_pred HHHHHhCCeEEEEEECcCCCCCccEEEEEEcCC
Confidence 999999999999999999999999999999997
No 7
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.98 E-value=8.3e-31 Score=217.00 Aligned_cols=188 Identities=36% Similarity=0.659 Sum_probs=166.2
Q ss_pred ChhHHHHHHhccchhhhhhHHhhhhhcCcccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCC
Q 025715 10 DIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM 89 (249)
Q Consensus 10 d~~~~~a~~~~~~~ra~~KL~ei~~~~~~~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~ 89 (249)
|.||+.+++++|++|.+|||.++++++..+++|.+|||+|||||+++..++.+.. +.++|+++|++++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~------------~~~~v~~vDis~~ 68 (188)
T TIGR00438 1 DFYYQKAKKEKYRSRASFKLLQLNQKFKLIKPGDTVLDLGAAPGGWSQVAVEQVG------------GKGRVIAVDLQPM 68 (188)
T ss_pred CHHHHHHhhcCCchhHHHHHHHHHHHhcccCCCCEEEEecCCCCHHHHHHHHHhC------------CCceEEEEecccc
Confidence 6799999999999999999999999999999999999999999999999988764 3578999999997
Q ss_pred CCCCCceEeecCCCChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEec
Q 025715 90 APIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFR 169 (249)
Q Consensus 90 ~~~~~v~~~~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~ 169 (249)
...++++++++|+.+.+....+.+.+..++||+|++|++++..|.++.++.........++..+.++|+|||++++.++.
T Consensus 69 ~~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~ 148 (188)
T TIGR00438 69 KPIENVDFIRGDFTDEEVLNKIRERVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQ 148 (188)
T ss_pred ccCCCceEEEeeCCChhHHHHHHHHhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEcc
Confidence 65578888999998876655555556667899999999877777777777666666778899999999999999998888
Q ss_pred CCCHHHHHHHHhcCCCeeEEecCCCCCCCCceEEEEEeec
Q 025715 170 GKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAVCENY 209 (249)
Q Consensus 170 ~~~~~~l~~~l~~~f~~v~~~kP~~sr~~s~E~y~v~~g~ 209 (249)
..+..+++..++..|..+.+.+|.++|..|+|.|+||.||
T Consensus 149 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (188)
T TIGR00438 149 GEEIDEYLNELRKLFEKVKVTKPQASRKRSAEVYIVAKRF 188 (188)
T ss_pred CccHHHHHHHHHhhhceEEEeCCCCCCcccceEEEEEecC
Confidence 8888899988888899999999999999999999999987
No 8
>KOG3673 consensus FtsJ-like RNA methyltransferase [RNA processing and modification]
Probab=99.94 E-value=5.3e-28 Score=219.53 Aligned_cols=237 Identities=20% Similarity=0.335 Sum_probs=186.4
Q ss_pred CCCCChhHHHHHHhccchhhhhhHHhhhhhcCcc--cC----C-----------CeEEEEcCCCChHHHHHHHHhc-CCC
Q 025715 6 RDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIF--EG----V-----------KRVVDLCAAPGSWSQVLSRKLY-LPA 67 (249)
Q Consensus 6 ~~~~d~~~~~a~~~~~~~ra~~KL~ei~~~~~~~--~~----g-----------~~vLDLG~gpG~~s~~l~~~~~-~~~ 67 (249)
|.|++|| ...+..=|.+||+.|+..++..|.++ +| | ..+.|+|+||||||.|++.+-. .++
T Consensus 216 RtRaNPy-EtIrs~fFlNRAAmKmANmD~i~d~mftNpRdp~g~~lva~~~~eLlYFaDvCAGPGGFSEYvLwRK~w~AK 294 (845)
T KOG3673|consen 216 RTRANPY-ETIRSAFFLNRAAMKMANMDKIYDWMFTNPRDPLGESLVAENVEELLYFADVCAGPGGFSEYVLWRKFWNAK 294 (845)
T ss_pred hhcCChH-HHHHHHHHhhHHHHHhhhHHHHHHHHhCCCCCcccCccccccHHHHHHHHhhhcCCCccchhhhhhhhhccc
Confidence 5778995 88888889999999999999999975 11 1 2567999999999999877643 345
Q ss_pred CCCCCCCCCCCCeE---EEecCCCCCCCCCceEeecCCCChhhHHHHHHhcC----CCcccEEEeCCCCCCCCCCCcCHH
Q 025715 68 KLSPDSREGDLPLI---VAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFD----GCKADLVVCDGAPDVTGLHDMDEF 140 (249)
Q Consensus 68 ~~~~~~~~~~~~~v---vavDi~~~~~~~~v~~~~gDi~~~~~~~~i~~~~~----~~~~DlVlsD~~~~~~g~~~~~~~ 140 (249)
|.+.|+.+..+-+. +|-....+.+.+|+. ..|||+++.++..+..++. +..+++.++||.+++.|+.|.++.
T Consensus 295 GFGfTL~G~nDFKLekF~aaS~e~FetfYG~k-~dGdi~dp~Nidsl~~~i~~~T~~~GVHf~MADGGFSVEGQeNiQEI 373 (845)
T KOG3673|consen 295 GFGFTLAGKNDFKLEKFTAASQEFFETFYGTK-DDGDIMDPVNIDSLEAHISRGTSGLGVHFMMADGGFSVEGQENIQEI 373 (845)
T ss_pred cceeEeccCCccchhhhhhcCHHhhhcccccc-CCCCcCCccchHHHHHHHhcCCCCcceEEEEecCCccccchhhHHHH
Confidence 55555555444332 222222233456753 6799999988777666543 356999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCCEEEEEEecCCC--HHHHHHHHhcCCCeeEEecCCCCCCCCceEEEEEeeccCCCC----
Q 025715 141 VQSQLILAGLTVVTHVLKEGGKFIAKIFRGKD--TSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAVCENYFPPEG---- 214 (249)
Q Consensus 141 ~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~--~~~l~~~l~~~f~~v~~~kP~~sr~~s~E~y~v~~g~~~~~~---- 214 (249)
.+.+|+..++..|+.++++||.|+||+|.... ..-+.++|..+|+.|.++||.+|||+++|+|+||+|.+....
T Consensus 374 LSKqLyLCQfL~aL~IvR~gG~F~CK~FDlFTPFSVGLvYLmy~Cfq~v~l~KP~tSRPANSERYivCKglr~~~~~~v~ 453 (845)
T KOG3673|consen 374 LSKQLYLCQFLVALCIVREGGNFFCKLFDLFTPFSVGLVYLMYVCFQSVSLHKPHTSRPANSERYIVCKGLRKEFANVVK 453 (845)
T ss_pred HHHHHHHHHHHHHheeeecCCeEEEeeecccCcchhhHHHHHHHHHHHhhcccCCCCCCCCCceeEEecchhhhhHHHHH
Confidence 99999999999999999999999999997443 456778888899999999999999999999999999886533
Q ss_pred -CCchhhhHhHHhhCCCCCCCCCccccCc-eEE
Q 025715 215 -FNPKDLHRLLEKVGSPWGGEDQGQCACN-IHY 245 (249)
Q Consensus 215 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 245 (249)
|..+ ++++++++.+.=..|+-..+|++ |.-
T Consensus 454 ~YL~~-VN~kL~~l~n~d~~DV~~~~pl~vi~~ 485 (845)
T KOG3673|consen 454 EYLKR-VNRKLDELKNKDSDDVTDLMPLDVIEA 485 (845)
T ss_pred HHHHH-HHHHHHHhhcCCchhHhhhccHHhhhc
Confidence 4443 67889999988878888888877 543
No 9
>KOG3674 consensus FtsJ-like RNA methyltransferase [RNA processing and modification]
Probab=99.88 E-value=8.2e-23 Score=184.09 Aligned_cols=217 Identities=24% Similarity=0.276 Sum_probs=158.8
Q ss_pred HhccchhhhhhHHhhhhhcCcc-cCCC--eEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCC------
Q 025715 18 EEGWRARSAFKLLQIDEEFNIF-EGVK--RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQP------ 88 (249)
Q Consensus 18 ~~~~~~ra~~KL~ei~~~~~~~-~~g~--~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~------ 88 (249)
.....+.||.||-||...|++. .++. ..++||.|||+|...+.+.+...++.. ....+..|..++|
T Consensus 106 ~ae~~T~AwcKl~Eil~~fpl~~~ea~~inS~HLCEaPGaFIaslnhyL~s~r~k~-----~~~W~W~anTLNPY~E~n~ 180 (696)
T KOG3674|consen 106 IAENVTKAWCKLCEILEVFPLDIFEASSINSFHLCEAPGAFIASLNHYLMSSRGKN-----MSYWKWGANTLNPYFENNS 180 (696)
T ss_pred HHHHHHHHHHHHHHHHHhcCccccccccccceeeecCccHHHHHHHHHHHhccCCc-----cceeeeccCccCcccccch
Confidence 3446678999999999999975 4444 789999999999998877664322210 0111233333333
Q ss_pred ----------CC-CCCCc---eEeecCCCChhhHHHHHHhc-CCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHH
Q 025715 89 ----------MA-PIEGV---IQVQGDITNARTAEVVIRHF-DGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVV 153 (249)
Q Consensus 89 ----------~~-~~~~v---~~~~gDi~~~~~~~~i~~~~-~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a 153 (249)
++ .+.+. ....||+.+......+.... ..++||+|++||+.+++|....++..+..|..+....|
T Consensus 181 ~~~mi~DDr~I~~Tld~WyFgpd~tGdi~~~~~~~~l~~~v~~~gtvdLVTADGS~dcqg~pgeqE~iVssL~~aEV~~A 260 (696)
T KOG3674|consen 181 CFDMIIDDRHIRPTLDQWYFGPDDTGDIEKFTEEYLLKQEVKLAGTVDLVTADGSTDCQGKPGEQESIVSSLISAEVEVA 260 (696)
T ss_pred HHHHhccchhhhccccceeeCCCCCccHHHHHHHHHHHHHHHhhceEEEEecCCccccCCCCccHHHHHHHHHHHHHHHH
Confidence 11 12221 12468887765544443311 12689999999999999999889988999999999999
Q ss_pred HHhccCCCEEEEEEecCC--CHHHHHHHHhcCCCeeEEecCCCCCCCCceEEEEEeeccCCCCCCchhhhHhHHhhCCCC
Q 025715 154 THVLKEGGKFIAKIFRGK--DTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAVCENYFPPEGFNPKDLHRLLEKVGSPW 231 (249)
Q Consensus 154 ~~~Lk~gG~lv~k~~~~~--~~~~l~~~l~~~f~~v~~~kP~~sr~~s~E~y~v~~g~~~~~~~~~~~~~~~~~~~~~~~ 231 (249)
+++|+.||+|++|+|+-. -...+++.+.-.|..|+++||.+||++|+|+|+||.||+++.++ |+++..| ....
T Consensus 261 L~~L~~gG~filKmft~fe~cS~~lmylLnc~F~~Vh~fKPatSk~GnSEvYVvCl~yK~~~~l-~~Ll~~m----~~~~ 335 (696)
T KOG3674|consen 261 LKLLRRGGRFILKMFTFFEKCSRDLMYLLNCNFSSVHAFKPATSKPGNSEVYVVCLGYKDHPDL-PRLLGSM----NMDI 335 (696)
T ss_pred HHHHhcCCeehHHHHHHHHHhhHHHHHHHHhhHhhhhccccccCCCCCceEEEEecccCCCccc-hhhhhhh----hccc
Confidence 999999999999999743 35678899999999999999999999999999999999887643 4455554 3333
Q ss_pred CCCCCccccCceEE
Q 025715 232 GGEDQGQCACNIHY 245 (249)
Q Consensus 232 ~~~~~~~~~~~~~~ 245 (249)
+ +++--+|++-|.
T Consensus 336 ~-nd~~~~~LF~~~ 348 (696)
T KOG3674|consen 336 S-NDTLVMPLFAKF 348 (696)
T ss_pred c-cchhhccccccc
Confidence 3 666777777665
No 10
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.59 E-value=1.6e-14 Score=123.22 Aligned_cols=141 Identities=20% Similarity=0.305 Sum_probs=109.2
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CC-CCceEeecCCCChhh
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNART 107 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~-~~v~~~~gDi~~~~~ 107 (249)
....+|||||||.|..+..++++.. ..+|++||+++.. .+ ++++++++|+.+..
T Consensus 43 ~~~~~IlDlGaG~G~l~L~la~r~~-------------~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~- 108 (248)
T COG4123 43 PKKGRILDLGAGNGALGLLLAQRTE-------------KAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFL- 108 (248)
T ss_pred ccCCeEEEecCCcCHHHHHHhccCC-------------CCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhh-
Confidence 3478999999999999999999864 4899999999832 12 47899999998743
Q ss_pred HHHHHHhcCCCcccEEEeCCCCCCCCCC-CcCHHH-HHH-----HHHHHHHHHHHhccCCCEEEEEEecCCCHHHHHHHH
Q 025715 108 AEVVIRHFDGCKADLVVCDGAPDVTGLH-DMDEFV-QSQ-----LILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQL 180 (249)
Q Consensus 108 ~~~i~~~~~~~~~DlVlsD~~~~~~g~~-~~~~~~-~~~-----l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~~~l~~~l 180 (249)
+.....+||+|+||++....+.. +.++.. .++ ..++.++.|.++||+||.|.+ ++++++..+++..+
T Consensus 109 -----~~~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~-V~r~erl~ei~~~l 182 (248)
T COG4123 109 -----KALVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAF-VHRPERLAEIIELL 182 (248)
T ss_pred -----hcccccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEE-EecHHHHHHHHHHH
Confidence 23344579999999976555544 333222 111 247789999999999999998 88999999999988
Q ss_pred hcC---CCeeEEecCCCCCCCCc
Q 025715 181 KLF---FPVVTFAKPKSSRNSSI 200 (249)
Q Consensus 181 ~~~---f~~v~~~kP~~sr~~s~ 200 (249)
+++ .+++.++.|...+++..
T Consensus 183 ~~~~~~~k~i~~V~p~~~k~A~~ 205 (248)
T COG4123 183 KSYNLEPKRIQFVYPKIGKAANR 205 (248)
T ss_pred HhcCCCceEEEEecCCCCCcceE
Confidence 874 57889999999888774
No 11
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.51 E-value=7.1e-14 Score=119.12 Aligned_cols=105 Identities=25% Similarity=0.373 Sum_probs=83.6
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhhH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~~ 108 (249)
.+|.+|||+|||||-++..+++..+ .++|+++|+++.. ...+++++.||..+++
T Consensus 50 ~~g~~vLDva~GTGd~a~~~~k~~g-------------~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LP-- 114 (238)
T COG2226 50 KPGDKVLDVACGTGDMALLLAKSVG-------------TGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLP-- 114 (238)
T ss_pred CCCCEEEEecCCccHHHHHHHHhcC-------------CceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCC--
Confidence 4799999999999999999999875 5899999999832 1234889999998875
Q ss_pred HHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCCCHHHH
Q 025715 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLL 176 (249)
Q Consensus 109 ~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~~~l 176 (249)
|++.+||+|++.- |.+|.+. ...+|+++.|+|||||.++|..+..+....+
T Consensus 115 ------f~D~sFD~vt~~f-----glrnv~d------~~~aL~E~~RVlKpgG~~~vle~~~p~~~~~ 165 (238)
T COG2226 115 ------FPDNSFDAVTISF-----GLRNVTD------IDKALKEMYRVLKPGGRLLVLEFSKPDNPVL 165 (238)
T ss_pred ------CCCCccCEEEeee-----hhhcCCC------HHHHHHHHHHhhcCCeEEEEEEcCCCCchhh
Confidence 6889999999853 4455443 2468999999999999999988866554433
No 12
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.51 E-value=2.4e-14 Score=122.36 Aligned_cols=117 Identities=26% Similarity=0.418 Sum_probs=73.8
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhhH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~~ 108 (249)
++|.+|||+|||||.++..++++.+ +.++|+++|+++.. ...+++++++|..+.+
T Consensus 46 ~~g~~vLDv~~GtG~~~~~l~~~~~------------~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp-- 111 (233)
T PF01209_consen 46 RPGDRVLDVACGTGDVTRELARRVG------------PNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLP-- 111 (233)
T ss_dssp -S--EEEEET-TTSHHHHHHGGGSS---------------EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB----
T ss_pred CCCCEEEEeCCChHHHHHHHHHHCC------------CccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhc--
Confidence 6789999999999999999988876 46899999999832 1347899999999865
Q ss_pred HHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCCCHHHHHHHHhcCCCee
Q 025715 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVV 187 (249)
Q Consensus 109 ~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~~~l~~~l~~~f~~v 187 (249)
+++++||+|++-. |.++... ...++.++.|+|||||++++..+..+....+...+..|++.+
T Consensus 112 ------~~d~sfD~v~~~f-----glrn~~d------~~~~l~E~~RVLkPGG~l~ile~~~p~~~~~~~~~~~y~~~i 173 (233)
T PF01209_consen 112 ------FPDNSFDAVTCSF-----GLRNFPD------RERALREMYRVLKPGGRLVILEFSKPRNPLLRALYKFYFKYI 173 (233)
T ss_dssp ------S-TT-EEEEEEES------GGG-SS------HHHHHHHHHHHEEEEEEEEEEEEEB-SSHHHHHHHHH-----
T ss_pred ------CCCCceeEEEHHh-----hHHhhCC------HHHHHHHHHHHcCCCeEEEEeeccCCCCchhhceeeeeeccc
Confidence 4678999999754 3333322 135789999999999999988886655444444455566643
No 13
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.50 E-value=2.4e-13 Score=118.36 Aligned_cols=124 Identities=20% Similarity=0.149 Sum_probs=88.7
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhhH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~~ 108 (249)
++|.+|||+|||||+++.++++.++ +.+.|+|+|+++.+ .+.++.++++|..+...
T Consensus 70 ~~g~~VLDl~ag~G~kt~~la~~~~------------~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~- 136 (264)
T TIGR00446 70 DPPERVLDMAAAPGGKTTQISALMK------------NEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGA- 136 (264)
T ss_pred CCcCEEEEECCCchHHHHHHHHHcC------------CCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhh-
Confidence 5789999999999999999999885 45799999999842 13457777888654321
Q ss_pred HHHHHhcCCCcccEEEeCCCCCCCCCCCcCH--------H---HHHHHHHHHHHHHHHhccCCCEEEEEEec--CCCHH-
Q 025715 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMDE--------F---VQSQLILAGLTVVTHVLKEGGKFIAKIFR--GKDTS- 174 (249)
Q Consensus 109 ~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~--------~---~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~--~~~~~- 174 (249)
...+||+|++|+++...|....++ . ....++..+|..|.++|||||.+|..+++ .++.+
T Consensus 137 -------~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~~~Ene~ 209 (264)
T TIGR00446 137 -------AVPKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLEPEENEA 209 (264)
T ss_pred -------hccCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChHHHHH
Confidence 124699999999776665432221 1 12346678999999999999999988774 23333
Q ss_pred HHHHHHhcC
Q 025715 175 LLYCQLKLF 183 (249)
Q Consensus 175 ~l~~~l~~~ 183 (249)
.+.++++.+
T Consensus 210 vv~~~l~~~ 218 (264)
T TIGR00446 210 VVDYLLEKR 218 (264)
T ss_pred HHHHHHHhC
Confidence 344566654
No 14
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=99.47 E-value=5e-13 Score=124.60 Aligned_cols=125 Identities=18% Similarity=0.176 Sum_probs=92.6
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhhH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~~ 108 (249)
++|.+|||+||||||.|.+++..++ ..+.|+|+|+++.+ .+.++...+.|.....
T Consensus 112 ~pg~~VLD~CAAPGgKTt~la~~l~------------~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~-- 177 (470)
T PRK11933 112 NAPQRVLDMAAAPGSKTTQIAALMN------------NQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFG-- 177 (470)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcC------------CCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhh--
Confidence 5889999999999999999999986 46899999999743 2355666677765432
Q ss_pred HHHHHhcCCCcccEEEeCCCCCCCCCCCcCH-----------HHHHHHHHHHHHHHHHhccCCCEEEEEEec--C-CCHH
Q 025715 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMDE-----------FVQSQLILAGLTVVTHVLKEGGKFIAKIFR--G-KDTS 174 (249)
Q Consensus 109 ~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~-----------~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~--~-~~~~ 174 (249)
+.+ ...||.|+.|++++..|....++ .....++..+|..|.++|||||.||..+++ + ++..
T Consensus 178 ----~~~-~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~~eENE~ 252 (470)
T PRK11933 178 ----AAL-PETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLNREENQA 252 (470)
T ss_pred ----hhc-hhhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCHHHHHH
Confidence 122 25799999999887777533322 123557889999999999999999998875 2 3334
Q ss_pred HHHHHHhcC
Q 025715 175 LLYCQLKLF 183 (249)
Q Consensus 175 ~l~~~l~~~ 183 (249)
.+.++++++
T Consensus 253 vV~~~L~~~ 261 (470)
T PRK11933 253 VCLWLKETY 261 (470)
T ss_pred HHHHHHHHC
Confidence 455677665
No 15
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.47 E-value=6.1e-13 Score=123.38 Aligned_cols=125 Identities=18% Similarity=0.204 Sum_probs=91.4
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhhH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~~ 108 (249)
++|.+|||+|||||+.+.++++.++ +.++|+|+|+++.+ .+.++++.++|..+...
T Consensus 236 ~~g~~VLD~cagpGgkt~~la~~~~------------~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~- 302 (431)
T PRK14903 236 EPGLRVLDTCAAPGGKTTAIAELMK------------DQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTE- 302 (431)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcC------------CCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhh-
Confidence 5789999999999999999999875 45899999999842 13457788888875421
Q ss_pred HHHHHhcCCCcccEEEeCCCCCCCCCCCcCH-----------HHHHHHHHHHHHHHHHhccCCCEEEEEEec---CCCHH
Q 025715 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMDE-----------FVQSQLILAGLTVVTHVLKEGGKFIAKIFR---GKDTS 174 (249)
Q Consensus 109 ~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~-----------~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~---~~~~~ 174 (249)
+..++||.|++|+++...|....+. .....++..++..+.++|||||.+++.+++ .++..
T Consensus 303 ------~~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne~ 376 (431)
T PRK14903 303 ------YVQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTKEENTE 376 (431)
T ss_pred ------hhhccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhCHH
Confidence 1235799999999876666422111 112346788999999999999999998885 23344
Q ss_pred HHHHHHhcC
Q 025715 175 LLYCQLKLF 183 (249)
Q Consensus 175 ~l~~~l~~~ 183 (249)
.+.+++.++
T Consensus 377 vv~~fl~~~ 385 (431)
T PRK14903 377 VVKRFVYEQ 385 (431)
T ss_pred HHHHHHHhC
Confidence 555666654
No 16
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.46 E-value=1.4e-12 Score=121.14 Aligned_cols=128 Identities=18% Similarity=0.139 Sum_probs=91.7
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhhH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~~ 108 (249)
++|.+|||+|||||+++.++++.++ +.++|+|+|+++.+ .+.+++++++|..+....
T Consensus 251 ~~g~~VLDl~ag~G~kt~~la~~~~------------~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~ 318 (434)
T PRK14901 251 QPGEVILDACAAPGGKTTHIAELMG------------DQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLEL 318 (434)
T ss_pred CCcCEEEEeCCCCchhHHHHHHHhC------------CCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccc
Confidence 5789999999999999999999875 45799999999742 235678888998764210
Q ss_pred HHHHHhcCCCcccEEEeCCCCCCCCCC--CcC------HH---HHHHHHHHHHHHHHHhccCCCEEEEEEec---CCCHH
Q 025715 109 EVVIRHFDGCKADLVVCDGAPDVTGLH--DMD------EF---VQSQLILAGLTVVTHVLKEGGKFIAKIFR---GKDTS 174 (249)
Q Consensus 109 ~~i~~~~~~~~~DlVlsD~~~~~~g~~--~~~------~~---~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~---~~~~~ 174 (249)
. .+..++||.|++|++++..|.. +.+ +. ....++..++..+.++|||||.||+.++. .++..
T Consensus 319 ---~-~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~Ene~ 394 (434)
T PRK14901 319 ---K-PQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPAENEA 394 (434)
T ss_pred ---c-ccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHH
Confidence 0 0123589999999876654532 111 11 12345788999999999999999977664 34555
Q ss_pred HHHHHHhcC
Q 025715 175 LLYCQLKLF 183 (249)
Q Consensus 175 ~l~~~l~~~ 183 (249)
.+..+++++
T Consensus 395 ~v~~~l~~~ 403 (434)
T PRK14901 395 QIEQFLARH 403 (434)
T ss_pred HHHHHHHhC
Confidence 676777765
No 17
>PTZ00146 fibrillarin; Provisional
Probab=99.45 E-value=3.6e-12 Score=111.47 Aligned_cols=124 Identities=17% Similarity=0.108 Sum_probs=85.9
Q ss_pred ccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCC-----C----CCCCceEeecCCCChhhHH
Q 025715 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM-----A----PIEGVIQVQGDITNARTAE 109 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~-----~----~~~~v~~~~gDi~~~~~~~ 109 (249)
++++.+|||||||||.|++++++.++ +.+.|+|||+++. . ..+|+.++.+|++.+....
T Consensus 130 IkpG~~VLDLGaG~G~~t~~lAdiVG------------~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~ 197 (293)
T PTZ00146 130 IKPGSKVLYLGAASGTTVSHVSDLVG------------PEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYR 197 (293)
T ss_pred cCCCCEEEEeCCcCCHHHHHHHHHhC------------CCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhhhh
Confidence 47999999999999999999999986 4689999999962 1 1368889999988643211
Q ss_pred HHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEec-----CCCHHHH----HHHH
Q 025715 110 VVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFR-----GKDTSLL----YCQL 180 (249)
Q Consensus 110 ~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~-----~~~~~~l----~~~l 180 (249)
. ...+||+|++|++. .++. ..++..+.++|||||.|++++-. .+...++ ...|
T Consensus 198 ----~-~~~~vDvV~~Dva~-------pdq~------~il~~na~r~LKpGG~~vI~ika~~id~g~~pe~~f~~ev~~L 259 (293)
T PTZ00146 198 ----M-LVPMVDVIFADVAQ-------PDQA------RIVALNAQYFLKNGGHFIISIKANCIDSTAKPEVVFASEVQKL 259 (293)
T ss_pred ----c-ccCCCCEEEEeCCC-------cchH------HHHHHHHHHhccCCCEEEEEEeccccccCCCHHHHHHHHHHHH
Confidence 1 12479999999842 1221 12345688999999999985431 2223333 2445
Q ss_pred hcC-CCeeEEecC
Q 025715 181 KLF-FPVVTFAKP 192 (249)
Q Consensus 181 ~~~-f~~v~~~kP 192 (249)
+.. |+.++.+..
T Consensus 260 ~~~GF~~~e~v~L 272 (293)
T PTZ00146 260 KKEGLKPKEQLTL 272 (293)
T ss_pred HHcCCceEEEEec
Confidence 544 887766543
No 18
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.43 E-value=5.2e-13 Score=124.38 Aligned_cols=131 Identities=21% Similarity=0.307 Sum_probs=91.4
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhhH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~~ 108 (249)
.++.+|||+|||||+++.++++.++ +.++|+|+|+++.+ .+.+++++++|+.+..
T Consensus 249 ~~g~~VLDlgaG~G~~t~~la~~~~------------~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~-- 314 (444)
T PRK14902 249 KGGDTVLDACAAPGGKTTHIAELLK------------NTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVH-- 314 (444)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhC------------CCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCccccc--
Confidence 5688999999999999999998874 35899999999742 2345788899987642
Q ss_pred HHHHHhcCCCcccEEEeCCCCCCCCCCC--------cCH---HHHHHHHHHHHHHHHHhccCCCEEEEEEec---CCCHH
Q 025715 109 EVVIRHFDGCKADLVVCDGAPDVTGLHD--------MDE---FVQSQLILAGLTVVTHVLKEGGKFIAKIFR---GKDTS 174 (249)
Q Consensus 109 ~~i~~~~~~~~~DlVlsD~~~~~~g~~~--------~~~---~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~---~~~~~ 174 (249)
..+. ++||+|++|+++...|... ..+ .....++..++..+.++|||||.|++.++. .++..
T Consensus 315 ----~~~~-~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~ 389 (444)
T PRK14902 315 ----EKFA-EKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIEKEENEE 389 (444)
T ss_pred ----chhc-ccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCChhhhHH
Confidence 1123 5799999998655444311 111 122345678899999999999999966553 34444
Q ss_pred HHHHHHhcC--CCeeEE
Q 025715 175 LLYCQLKLF--FPVVTF 189 (249)
Q Consensus 175 ~l~~~l~~~--f~~v~~ 189 (249)
.+...++++ |+.+.+
T Consensus 390 vv~~~l~~~~~~~~~~~ 406 (444)
T PRK14902 390 VIEAFLEEHPEFELVPL 406 (444)
T ss_pred HHHHHHHhCCCcEEecc
Confidence 555666653 544443
No 19
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=99.40 E-value=4.2e-12 Score=114.95 Aligned_cols=128 Identities=24% Similarity=0.290 Sum_probs=91.5
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhhH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~~ 108 (249)
++|.+|||+|+||||.|.++++.+.. ....|+|+|+++.+ .+.++..+..|.......
T Consensus 155 ~pge~VlD~cAAPGGKTthla~~~~~-----------~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~ 223 (355)
T COG0144 155 KPGERVLDLCAAPGGKTTHLAELMEN-----------EGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAEL 223 (355)
T ss_pred CCcCEEEEECCCCCCHHHHHHHhcCC-----------CCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEeccccccccc
Confidence 68999999999999999999999861 23566999999843 234555666665432210
Q ss_pred HHHHHhcCCCcccEEEeCCCCCCCCCCC--------cCH---HHHHHHHHHHHHHHHHhccCCCEEEEEEec--C-CCHH
Q 025715 109 EVVIRHFDGCKADLVVCDGAPDVTGLHD--------MDE---FVQSQLILAGLTVVTHVLKEGGKFIAKIFR--G-KDTS 174 (249)
Q Consensus 109 ~~i~~~~~~~~~DlVlsD~~~~~~g~~~--------~~~---~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~--~-~~~~ 174 (249)
.....+||.|+.|.+++..|... ... .....++..+|..|.++|||||.||..+++ + ++..
T Consensus 224 -----~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~eENE~ 298 (355)
T COG0144 224 -----LPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTPEENEE 298 (355)
T ss_pred -----ccccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCchhcCHH
Confidence 11223699999999888777532 121 224567899999999999999999988885 3 3445
Q ss_pred HHHHHHhcC
Q 025715 175 LLYCQLKLF 183 (249)
Q Consensus 175 ~l~~~l~~~ 183 (249)
.+.+++++.
T Consensus 299 vV~~~L~~~ 307 (355)
T COG0144 299 VVERFLERH 307 (355)
T ss_pred HHHHHHHhC
Confidence 566777764
No 20
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.40 E-value=1.4e-12 Score=106.19 Aligned_cols=119 Identities=27% Similarity=0.248 Sum_probs=84.0
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhhHH
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTAE 109 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~~~ 109 (249)
++.+|||+|||+|..+.+++++.+ ..+|+++|+++.+ .+.+++++..|+.+.
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~-------------~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~---- 93 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGP-------------DAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEA---- 93 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTST-------------CEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTT----
T ss_pred cCCeEEEecCChHHHHHHHHHhCC-------------CCEEEEEcCCHHHHHHHHHHHHhcCcccccccccccccc----
Confidence 667999999999999999998764 4689999999853 134478889998763
Q ss_pred HHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCCCHHHHHHHHhcCCCeeEE
Q 025715 110 VVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTF 189 (249)
Q Consensus 110 ~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~~~l~~~l~~~f~~v~~ 189 (249)
+.+.+||+|+||++.... . .....+....+..|.++|+|||.|++-.-+......+ +++.|..+.+
T Consensus 94 -----~~~~~fD~Iv~NPP~~~~-~-----~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~~~~~~~~---l~~~f~~~~~ 159 (170)
T PF05175_consen 94 -----LPDGKFDLIVSNPPFHAG-G-----DDGLDLLRDFIEQARRYLKPGGRLFLVINSHLGYERL---LKELFGDVEV 159 (170)
T ss_dssp -----CCTTCEEEEEE---SBTT-S-----HCHHHHHHHHHHHHHHHEEEEEEEEEEEETTSCHHHH---HHHHHS--EE
T ss_pred -----ccccceeEEEEccchhcc-c-----ccchhhHHHHHHHHHHhccCCCEEEEEeecCCChHHH---HHHhcCCEEE
Confidence 345799999999864322 1 1123445678899999999999998844455555555 5666877776
Q ss_pred e
Q 025715 190 A 190 (249)
Q Consensus 190 ~ 190 (249)
+
T Consensus 160 ~ 160 (170)
T PF05175_consen 160 V 160 (170)
T ss_dssp E
T ss_pred E
Confidence 5
No 21
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.39 E-value=3.8e-12 Score=118.01 Aligned_cols=125 Identities=18% Similarity=0.215 Sum_probs=87.9
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC-----------CC-CceEeecCCCChhh
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP-----------IE-GVIQVQGDITNART 107 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~-----------~~-~v~~~~gDi~~~~~ 107 (249)
.+|.+|||+|||||+++.++++.++ .++|+|+|+++.+. +. .+....+|..+...
T Consensus 237 ~~g~~VLDlcag~G~kt~~la~~~~-------------~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~ 303 (426)
T TIGR00563 237 QNEETILDACAAPGGKTTHILELAP-------------QAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQ 303 (426)
T ss_pred CCCCeEEEeCCCccHHHHHHHHHcC-------------CCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccc
Confidence 5789999999999999999998874 47999999998431 12 12235666654321
Q ss_pred HHHHHHhcCCCcccEEEeCCCCCCCCCCC--c------CH---HHHHHHHHHHHHHHHHhccCCCEEEEEEecC---CCH
Q 025715 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHD--M------DE---FVQSQLILAGLTVVTHVLKEGGKFIAKIFRG---KDT 173 (249)
Q Consensus 108 ~~~i~~~~~~~~~DlVlsD~~~~~~g~~~--~------~~---~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~---~~~ 173 (249)
....++||.|++|++++..|... . .. .....++..+|..|.++|||||.||+.+++- ++.
T Consensus 304 ------~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~~Ene 377 (426)
T TIGR00563 304 ------WAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLPEENS 377 (426)
T ss_pred ------cccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhCH
Confidence 11346899999999877666421 1 11 1234467889999999999999999887753 455
Q ss_pred HHHHHHHhcC
Q 025715 174 SLLYCQLKLF 183 (249)
Q Consensus 174 ~~l~~~l~~~ 183 (249)
..+..+++++
T Consensus 378 ~~v~~~l~~~ 387 (426)
T TIGR00563 378 EQIKAFLQEH 387 (426)
T ss_pred HHHHHHHHhC
Confidence 5566677654
No 22
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.38 E-value=4.2e-12 Score=118.37 Aligned_cols=123 Identities=22% Similarity=0.246 Sum_probs=89.7
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhhH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~~ 108 (249)
.+|.+|||+|||||+++.++++.++ ..++|+|+|+++.+ .+.+++++++|..+..
T Consensus 249 ~~g~~VLDlgaG~G~kt~~la~~~~------------~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~-- 314 (445)
T PRK14904 249 QPGSTVLDLCAAPGGKSTFMAELMQ------------NRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFS-- 314 (445)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHhC------------CCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccc--
Confidence 5789999999999999999998875 35799999999842 1345788889987632
Q ss_pred HHHHHhcCCCcccEEEeCCCCCCCCCCC--------cCHHH---HHHHHHHHHHHHHHhccCCCEEEEEEecC---CCHH
Q 025715 109 EVVIRHFDGCKADLVVCDGAPDVTGLHD--------MDEFV---QSQLILAGLTVVTHVLKEGGKFIAKIFRG---KDTS 174 (249)
Q Consensus 109 ~~i~~~~~~~~~DlVlsD~~~~~~g~~~--------~~~~~---~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~---~~~~ 174 (249)
...+||+|++|+++...|... .+... ...++..++..+.++|||||.+++.+++- ++..
T Consensus 315 -------~~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~~Ene~ 387 (445)
T PRK14904 315 -------PEEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEPEENEL 387 (445)
T ss_pred -------cCCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHHH
Confidence 235799999998766555421 11111 23456788999999999999999988753 2334
Q ss_pred HHHHHHhcC
Q 025715 175 LLYCQLKLF 183 (249)
Q Consensus 175 ~l~~~l~~~ 183 (249)
.+..+++++
T Consensus 388 ~v~~~l~~~ 396 (445)
T PRK14904 388 QIEAFLQRH 396 (445)
T ss_pred HHHHHHHhC
Confidence 455667654
No 23
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.38 E-value=1.2e-12 Score=113.64 Aligned_cols=168 Identities=20% Similarity=0.178 Sum_probs=112.4
Q ss_pred hhHHhhhhhcCcccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCC-C
Q 025715 27 FKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIE-G 94 (249)
Q Consensus 27 ~KL~ei~~~~~~~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~-~ 94 (249)
-|+-.+.++++ ++||++|||+|||.|+.+.+++++.+ .+|+|+++|+.. .++ +
T Consensus 59 ~k~~~~~~kl~-L~~G~~lLDiGCGWG~l~~~aA~~y~--------------v~V~GvTlS~~Q~~~~~~r~~~~gl~~~ 123 (283)
T COG2230 59 AKLDLILEKLG-LKPGMTLLDIGCGWGGLAIYAAEEYG--------------VTVVGVTLSEEQLAYAEKRIAARGLEDN 123 (283)
T ss_pred HHHHHHHHhcC-CCCCCEEEEeCCChhHHHHHHHHHcC--------------CEEEEeeCCHHHHHHHHHHHHHcCCCcc
Confidence 34555566665 58999999999999999999999875 799999999842 233 6
Q ss_pred ceEeecCCCChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCCCH-
Q 025715 95 VIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDT- 173 (249)
Q Consensus 95 v~~~~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~- 173 (249)
++++..|..+.+ +.||.|+|-+.+...|..+.+ ..+..+.++|+|||.+++......+.
T Consensus 124 v~v~l~d~rd~~-----------e~fDrIvSvgmfEhvg~~~~~---------~ff~~~~~~L~~~G~~llh~I~~~~~~ 183 (283)
T COG2230 124 VEVRLQDYRDFE-----------EPFDRIVSVGMFEHVGKENYD---------DFFKKVYALLKPGGRMLLHSITGPDQE 183 (283)
T ss_pred cEEEeccccccc-----------cccceeeehhhHHHhCcccHH---------HHHHHHHhhcCCCceEEEEEecCCCcc
Confidence 777777877642 459999999988877765544 45788999999999999877643321
Q ss_pred --HHHHHHHhcCCCeeEEecCCCCCCC--Cce-EEEEEeeccCCCCCCchhhhHhHHhhCCCCC
Q 025715 174 --SLLYCQLKLFFPVVTFAKPKSSRNS--SIE-AFAVCENYFPPEGFNPKDLHRLLEKVGSPWG 232 (249)
Q Consensus 174 --~~l~~~l~~~f~~v~~~kP~~sr~~--s~E-~y~v~~g~~~~~~~~~~~~~~~~~~~~~~~~ 232 (249)
....++.+-.|..-.+ |..+... .++ .+.|..--..+.+|..+ |+.|-++|++.|+
T Consensus 184 ~~~~~~~i~~yiFPgG~l--Ps~~~i~~~~~~~~~~v~~~~~~~~hYa~T-l~~W~~~f~~~~~ 244 (283)
T COG2230 184 FRRFPDFIDKYIFPGGEL--PSISEILELASEAGFVVLDVESLRPHYART-LRLWRERFEANRD 244 (283)
T ss_pred cccchHHHHHhCCCCCcC--CCHHHHHHHHHhcCcEEehHhhhcHHHHHH-HHHHHHHHHHHHH
Confidence 2222222323432221 2111100 112 23444444446777775 7899999988776
No 24
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=99.37 E-value=6.5e-12 Score=112.95 Aligned_cols=126 Identities=21% Similarity=0.274 Sum_probs=94.1
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhhH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~~ 108 (249)
++|.||||+||+|||.+.+++..|. ..|.|+|.|.+..+ ...|....+.|....+.
T Consensus 240 q~gERIlDmcAAPGGKTt~IAalMk------------n~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~- 306 (460)
T KOG1122|consen 240 QPGERILDMCAAPGGKTTHIAALMK------------NTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPE- 306 (460)
T ss_pred CCCCeecchhcCCCchHHHHHHHHc------------CCceEEecccchHHHHHHHHHHHHhCCCceEEEccCcccccc-
Confidence 6799999999999999999999997 67999999998743 13454455666654321
Q ss_pred HHHHHhcCCCcccEEEeCCCCCCCCCCCcCH-----------HHHHHHHHHHHHHHHHhccCCCEEEEEEec---CCCHH
Q 025715 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMDE-----------FVQSQLILAGLTVVTHVLKEGGKFIAKIFR---GKDTS 174 (249)
Q Consensus 109 ~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~-----------~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~---~~~~~ 174 (249)
+.+.+ +||.|+.|++++.+|.-..++ .....|++..|..|..++++||.||..+++ .++..
T Consensus 307 ----~~~~~-~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~~~ENE~ 381 (460)
T KOG1122|consen 307 ----KEFPG-SFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSITVEENEA 381 (460)
T ss_pred ----cccCc-ccceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecchhhhHH
Confidence 12454 899999999887766533322 112447889999999999999999988874 34555
Q ss_pred HHHHHHhcC
Q 025715 175 LLYCQLKLF 183 (249)
Q Consensus 175 ~l~~~l~~~ 183 (249)
.+-++|+++
T Consensus 382 vV~yaL~K~ 390 (460)
T KOG1122|consen 382 VVDYALKKR 390 (460)
T ss_pred HHHHHHHhC
Confidence 677888874
No 25
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.36 E-value=5e-12 Score=117.23 Aligned_cols=125 Identities=21% Similarity=0.262 Sum_probs=89.9
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC------C----CCceEeecCCCChhhHH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP------I----EGVIQVQGDITNARTAE 109 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~------~----~~v~~~~gDi~~~~~~~ 109 (249)
.+|.+|||+|||||+++.+++++++ .+.|+|+|+++... . .+++++++|+.+...
T Consensus 243 ~~g~~VLDlgaG~G~~t~~la~~~~-------------~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~-- 307 (427)
T PRK10901 243 QNGERVLDACAAPGGKTAHILELAP-------------QAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQ-- 307 (427)
T ss_pred CCCCEEEEeCCCCChHHHHHHHHcC-------------CCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchh--
Confidence 5789999999999999999998864 37999999998431 0 135778899876421
Q ss_pred HHHHhcCCCcccEEEeCCCCCCCCCCC--------cCHH---HHHHHHHHHHHHHHHhccCCCEEEEEEe---cCCCHHH
Q 025715 110 VVIRHFDGCKADLVVCDGAPDVTGLHD--------MDEF---VQSQLILAGLTVVTHVLKEGGKFIAKIF---RGKDTSL 175 (249)
Q Consensus 110 ~i~~~~~~~~~DlVlsD~~~~~~g~~~--------~~~~---~~~~l~~~~l~~a~~~Lk~gG~lv~k~~---~~~~~~~ 175 (249)
.+..++||.|++|+++...|... .... ....++..++..+.++|||||.+++.++ ..++...
T Consensus 308 ----~~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~~ 383 (427)
T PRK10901 308 ----WWDGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILPEENEQQ 383 (427)
T ss_pred ----hcccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhCHHH
Confidence 12346899999999766555321 1111 1234567889999999999999997766 3455666
Q ss_pred HHHHHhcC
Q 025715 176 LYCQLKLF 183 (249)
Q Consensus 176 l~~~l~~~ 183 (249)
+...++++
T Consensus 384 v~~~l~~~ 391 (427)
T PRK10901 384 IKAFLARH 391 (427)
T ss_pred HHHHHHhC
Confidence 66677654
No 26
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.36 E-value=5.2e-12 Score=95.02 Aligned_cols=97 Identities=26% Similarity=0.334 Sum_probs=71.9
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC------------CCCCceEeecCC-CChhh
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------------PIEGVIQVQGDI-TNART 107 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~------------~~~~v~~~~gDi-~~~~~ 107 (249)
|+.+|||||||+|.++..++++.+ ..+|+|+|+++.. ..++++++++|+ ...+
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~-------------~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~- 66 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFP-------------GARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPD- 66 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHT-------------TSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTT-
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCC-------------CCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcc-
Confidence 678999999999999999998553 5899999999832 136899999999 2221
Q ss_pred HHHHHHhcCCCcccEEEeCC-CCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEE
Q 025715 108 AEVVIRHFDGCKADLVVCDG-APDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKI 167 (249)
Q Consensus 108 ~~~i~~~~~~~~~DlVlsD~-~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~ 167 (249)
....||+|++++ .... ..+. +.....+..+.+.|+|||.|++..
T Consensus 67 --------~~~~~D~v~~~~~~~~~-----~~~~---~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 67 --------FLEPFDLVICSGFTLHF-----LLPL---DERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp --------TSSCEEEEEECSGSGGG-----CCHH---HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred --------cCCCCCEEEECCCcccc-----ccch---hHHHHHHHHHHHhcCCCcEEEEEE
Confidence 235799999987 2110 1111 223457888899999999999864
No 27
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=99.35 E-value=6.1e-12 Score=111.61 Aligned_cols=86 Identities=33% Similarity=0.397 Sum_probs=69.7
Q ss_pred ccchhhhhhHHhhhhhcC-------cccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC-
Q 025715 20 GWRARSAFKLLQIDEEFN-------IFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP- 91 (249)
Q Consensus 20 ~~~~ra~~KL~ei~~~~~-------~~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~- 91 (249)
+-+|||++||.|+...|. .+.+|+++|||||+|||||+.+.++ + .+|+|||..++.+
T Consensus 183 ~apSRs~lKLeEA~~~F~~~~~~~~~~~~g~~vlDLGAsPGGWT~~L~~r-G--------------~~V~AVD~g~l~~~ 247 (357)
T PRK11760 183 DAPSRSTLKLEEAFHVFIPRDEWDERLAPGMRAVDLGAAPGGWTYQLVRR-G--------------MFVTAVDNGPMAQS 247 (357)
T ss_pred CCCChHHHHHHHHHHhcccchhhhcccCCCCEEEEeCCCCcHHHHHHHHc-C--------------CEEEEEechhcCHh
Confidence 567999999999966664 4689999999999999999999976 3 5999999998763
Q ss_pred ---CCCceEeecCCCChhhHHHHHHhcCCCcccEEEeCCC
Q 025715 92 ---IEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGA 128 (249)
Q Consensus 92 ---~~~v~~~~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~ 128 (249)
.++|....+|...... ..+.+|+|+||+.
T Consensus 248 L~~~~~V~h~~~d~fr~~p--------~~~~vDwvVcDmv 279 (357)
T PRK11760 248 LMDTGQVEHLRADGFKFRP--------PRKNVDWLVCDMV 279 (357)
T ss_pred hhCCCCEEEEeccCcccCC--------CCCCCCEEEEecc
Confidence 3678888887655321 1468999999985
No 28
>PRK04266 fibrillarin; Provisional
Probab=99.32 E-value=5.8e-11 Score=101.10 Aligned_cols=122 Identities=18% Similarity=0.203 Sum_probs=83.7
Q ss_pred ccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC---------CCCCceEeecCCCChhhHH
Q 025715 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------PIEGVIQVQGDITNARTAE 109 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~---------~~~~v~~~~gDi~~~~~~~ 109 (249)
+++|.+|||+|||||.++.++++..+ .+.|+|+|+++.. ..+++.++.+|+.++....
T Consensus 70 i~~g~~VlD~G~G~G~~~~~la~~v~-------------~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~ 136 (226)
T PRK04266 70 IKKGSKVLYLGAASGTTVSHVSDIVE-------------EGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYA 136 (226)
T ss_pred CCCCCEEEEEccCCCHHHHHHHHhcC-------------CCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhh
Confidence 47899999999999999999998874 4799999999831 2367889999998642111
Q ss_pred HHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEe------cCCC---HHHHHHHH
Q 025715 110 VVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF------RGKD---TSLLYCQL 180 (249)
Q Consensus 110 ~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~------~~~~---~~~l~~~l 180 (249)
.+. .+||+|++|+.. .+. ...++..+.++|||||.+++.+. ..+. ..+....+
T Consensus 137 ----~l~-~~~D~i~~d~~~-------p~~------~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~~~~~~~~~~~l 198 (226)
T PRK04266 137 ----HVV-EKVDVIYQDVAQ-------PNQ------AEIAIDNAEFFLKDGGYLLLAIKARSIDVTKDPKEIFKEEIRKL 198 (226)
T ss_pred ----hcc-ccCCEEEECCCC-------hhH------HHHHHHHHHHhcCCCcEEEEEEecccccCcCCHHHHHHHHHHHH
Confidence 123 469999998641 111 12357888999999999999433 1111 12233445
Q ss_pred hcC-CCeeEEec
Q 025715 181 KLF-FPVVTFAK 191 (249)
Q Consensus 181 ~~~-f~~v~~~k 191 (249)
+.. |+.+...-
T Consensus 199 ~~aGF~~i~~~~ 210 (226)
T PRK04266 199 EEGGFEILEVVD 210 (226)
T ss_pred HHcCCeEEEEEc
Confidence 443 88777654
No 29
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.31 E-value=3.8e-11 Score=102.04 Aligned_cols=105 Identities=19% Similarity=0.247 Sum_probs=76.9
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhhH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~~ 108 (249)
+++.+|||+|||+|.++..+++..+ +.++|+++|+++.. ..++++++.+|+.+.+
T Consensus 44 ~~~~~vLDiGcG~G~~~~~la~~~~------------~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-- 109 (231)
T TIGR02752 44 QAGTSALDVCCGTADWSIALAEAVG------------PEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELP-- 109 (231)
T ss_pred CCCCEEEEeCCCcCHHHHHHHHHhC------------CCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCC--
Confidence 5789999999999999999998875 45799999998632 1356888889987642
Q ss_pred HHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCCCHHH
Q 025715 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSL 175 (249)
Q Consensus 109 ~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~~~ 175 (249)
+..++||+|+++...... .+. ..++..+.++|+|||.+++......+...
T Consensus 110 ------~~~~~fD~V~~~~~l~~~----~~~-------~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~ 159 (231)
T TIGR02752 110 ------FDDNSFDYVTIGFGLRNV----PDY-------MQVLREMYRVVKPGGKVVCLETSQPTIPG 159 (231)
T ss_pred ------CCCCCccEEEEecccccC----CCH-------HHHHHHHHHHcCcCeEEEEEECCCCCChH
Confidence 345789999987543221 111 24678889999999999975554444333
No 30
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.31 E-value=2.6e-11 Score=102.84 Aligned_cols=121 Identities=21% Similarity=0.252 Sum_probs=94.9
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CC---CCceEeecCCCChh
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI---EGVIQVQGDITNAR 106 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~---~~v~~~~gDi~~~~ 106 (249)
+++++||+|+|+|-.+..+.+......+. .+++|+.+|++|.. ++ ..+.++.+|..+++
T Consensus 100 ~~m~~lDvaGGTGDiaFril~~v~s~~~~-------~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~Lp 172 (296)
T KOG1540|consen 100 KGMKVLDVAGGTGDIAFRILRHVKSQFGD-------RESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLP 172 (296)
T ss_pred CCCeEEEecCCcchhHHHHHHhhccccCC-------CCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCC
Confidence 57999999999999999998887632221 34799999999842 12 23889999998875
Q ss_pred hHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCCCHHHHHHHHhcCCCe
Q 025715 107 TAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPV 186 (249)
Q Consensus 107 ~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~~~l~~~l~~~f~~ 186 (249)
|++.++|..+.-. |++|..+. ..++++|+|+|||||+|.|-.|...+...+.++..+++..
T Consensus 173 --------Fdd~s~D~yTiaf-----GIRN~th~------~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~~ysf~ 233 (296)
T KOG1540|consen 173 --------FDDDSFDAYTIAF-----GIRNVTHI------QKALREAYRVLKPGGRFSCLEFSKVENEPLKWFYDQYSFD 233 (296)
T ss_pred --------CCCCcceeEEEec-----ceecCCCH------HHHHHHHHHhcCCCcEEEEEEccccccHHHHHHHHhhhhh
Confidence 5788999998743 45555542 4689999999999999999999887777888888888776
Q ss_pred e
Q 025715 187 V 187 (249)
Q Consensus 187 v 187 (249)
|
T Consensus 234 V 234 (296)
T KOG1540|consen 234 V 234 (296)
T ss_pred h
Confidence 6
No 31
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.30 E-value=2.1e-11 Score=106.02 Aligned_cols=102 Identities=24% Similarity=0.357 Sum_probs=78.0
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC--------C------CCCceEeecCCCCh
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--------P------IEGVIQVQGDITNA 105 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~--------~------~~~v~~~~gDi~~~ 105 (249)
.++.+|||+|||+|.++..+++..+ +.++|+|+|+++.. . .++++++++|+.+.
T Consensus 72 ~~~~~VLDlGcGtG~~~~~la~~~~------------~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~l 139 (261)
T PLN02233 72 KMGDRVLDLCCGSGDLAFLLSEKVG------------SDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDL 139 (261)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHhC------------CCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccC
Confidence 5788999999999999998888765 35799999999732 0 23678899998775
Q ss_pred hhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCCC
Q 025715 106 RTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKD 172 (249)
Q Consensus 106 ~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~ 172 (249)
+ +++++||+|++....... .+. ..++..+.++|||||.+++..+..++
T Consensus 140 p--------~~~~sfD~V~~~~~l~~~----~d~-------~~~l~ei~rvLkpGG~l~i~d~~~~~ 187 (261)
T PLN02233 140 P--------FDDCYFDAITMGYGLRNV----VDR-------LKAMQEMYRVLKPGSRVSILDFNKST 187 (261)
T ss_pred C--------CCCCCEeEEEEecccccC----CCH-------HHHHHHHHHHcCcCcEEEEEECCCCC
Confidence 4 456789999987653321 121 35788999999999999998776544
No 32
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.25 E-value=1.1e-10 Score=100.08 Aligned_cols=133 Identities=21% Similarity=0.227 Sum_probs=90.5
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhhHH
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTAE 109 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~~~ 109 (249)
.+.+|||+|||+|.++..+++..+ ...++++|+++.. .+.+++++++|+.+.
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~-------------~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~---- 149 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERP-------------DARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEP---- 149 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCC-------------CCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhcc----
Confidence 456999999999999999998764 4699999999732 134678889998652
Q ss_pred HHHHhcCCCcccEEEeCCCCCCCCCCC-cCHH--------------HHHHHHHHHHHHHHHhccCCCEEEEEEecCCCHH
Q 025715 110 VVIRHFDGCKADLVVCDGAPDVTGLHD-MDEF--------------VQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTS 174 (249)
Q Consensus 110 ~i~~~~~~~~~DlVlsD~~~~~~g~~~-~~~~--------------~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~~ 174 (249)
+..++||+|++|++....+... .... .........+..+.++|+|||.+++.. ......
T Consensus 150 -----~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~-~~~~~~ 223 (251)
T TIGR03534 150 -----LPGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEI-GYDQGE 223 (251)
T ss_pred -----CcCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEE-CccHHH
Confidence 2356899999998643222110 0000 012234567889999999999999854 223344
Q ss_pred HHHHHHhc-CCCeeEEecCCCCC
Q 025715 175 LLYCQLKL-FFPVVTFAKPKSSR 196 (249)
Q Consensus 175 ~l~~~l~~-~f~~v~~~kP~~sr 196 (249)
.+...+++ -|..+.+.+...++
T Consensus 224 ~~~~~l~~~gf~~v~~~~d~~~~ 246 (251)
T TIGR03534 224 AVRALFEAAGFADVETRKDLAGK 246 (251)
T ss_pred HHHHHHHhCCCCceEEEeCCCCC
Confidence 55555554 48888888776654
No 33
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.23 E-value=2.7e-10 Score=99.20 Aligned_cols=140 Identities=21% Similarity=0.178 Sum_probs=94.4
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhhH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~~ 108 (249)
.++.+|||+|||+|.++..++...+ ...|+++|+++.. ...++.++.+|+.+.
T Consensus 107 ~~~~~vLDiG~GsG~~~~~la~~~~-------------~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~--- 170 (275)
T PRK09328 107 KEPLRVLDLGTGSGAIALALAKERP-------------DAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEP--- 170 (275)
T ss_pred cCCCEEEEEcCcHHHHHHHHHHHCC-------------CCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCc---
Confidence 3567999999999999999998763 5799999999742 124688889998653
Q ss_pred HHHHHhcCCCcccEEEeCCCCCCCCCCC-c-CH-------------HHHHHHHHHHHHHHHHhccCCCEEEEEEecCCCH
Q 025715 109 EVVIRHFDGCKADLVVCDGAPDVTGLHD-M-DE-------------FVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDT 173 (249)
Q Consensus 109 ~~i~~~~~~~~~DlVlsD~~~~~~g~~~-~-~~-------------~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~ 173 (249)
+..++||+|++|++....+... . ++ ......+..++..+.++|+|||.+++.+ .....
T Consensus 171 ------~~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~-g~~~~ 243 (275)
T PRK09328 171 ------LPGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEI-GYDQG 243 (275)
T ss_pred ------CCCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEE-CchHH
Confidence 1246899999997532221100 0 00 0123456778889999999999999854 22223
Q ss_pred HHHHHHHhc-CCCeeEEecCCCCCCCCceEEEEE
Q 025715 174 SLLYCQLKL-FFPVVTFAKPKSSRNSSIEAFAVC 206 (249)
Q Consensus 174 ~~l~~~l~~-~f~~v~~~kP~~sr~~s~E~y~v~ 206 (249)
..+...+.. -|..+.+++....+ ++++++
T Consensus 244 ~~~~~~l~~~gf~~v~~~~d~~~~----~r~~~~ 273 (275)
T PRK09328 244 EAVRALLAAAGFADVETRKDLAGR----DRVVLG 273 (275)
T ss_pred HHHHHHHHhCCCceeEEecCCCCC----ceEEEE
Confidence 345555543 48888888766654 455654
No 34
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.22 E-value=3.7e-11 Score=95.80 Aligned_cols=100 Identities=22% Similarity=0.331 Sum_probs=75.8
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhhH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~~ 108 (249)
+.+.+|||+|||+|.++..+++.++ +..+++|+|+++.. .+++++++++|+.+.+.
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~------------~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~- 68 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELN------------PGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQ- 68 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHST------------TTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCG-
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcC------------CCCEEEEEECcHHHHHHhhcccccccccccceEEeehhcccc-
Confidence 4578999999999999999997654 45899999999832 24689999999998531
Q ss_pred HHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEec
Q 025715 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFR 169 (249)
Q Consensus 109 ~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~ 169 (249)
.+. +.||+|++++.+... .+. ...+..+.++|++||.+++..+.
T Consensus 69 -----~~~-~~~D~I~~~~~l~~~----~~~-------~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 69 -----ELE-EKFDIIISNGVLHHF----PDP-------EKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp -----CSS-TTEEEEEEESTGGGT----SHH-------HHHHHHHHHHEEEEEEEEEEEEE
T ss_pred -----ccC-CCeeEEEEcCchhhc----cCH-------HHHHHHHHHHcCCCcEEEEEECC
Confidence 122 689999998765321 111 24678899999999999987665
No 35
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.22 E-value=1.4e-10 Score=95.44 Aligned_cols=104 Identities=16% Similarity=0.129 Sum_probs=75.7
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhhHH
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTAE 109 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~~~ 109 (249)
++.+|||+|||+|.++..++... +.++|+|+|+++.. .+++++++++|+.+..
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~-------------~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~--- 105 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIAR-------------PELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQ--- 105 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHC-------------CCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhcc---
Confidence 37899999999999999887654 35789999999831 2457889999986631
Q ss_pred HHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCCCHHHHHHHHhc
Q 025715 110 VVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKL 182 (249)
Q Consensus 110 ~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~~~l~~~l~~ 182 (249)
..++||+|++++. .+. ...+..+.++|+|||.+++. .......++....++
T Consensus 106 ------~~~~fD~I~s~~~------~~~---------~~~~~~~~~~LkpgG~lvi~-~~~~~~~~~~~~~e~ 156 (181)
T TIGR00138 106 ------HEEQFDVITSRAL------ASL---------NVLLELTLNLLKVGGYFLAY-KGKKYLDEIEEAKRK 156 (181)
T ss_pred ------ccCCccEEEehhh------hCH---------HHHHHHHHHhcCCCCEEEEE-cCCCcHHHHHHHHHh
Confidence 2468999999751 111 23566778999999999984 455556666665554
No 36
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.22 E-value=2.6e-11 Score=106.06 Aligned_cols=107 Identities=19% Similarity=0.203 Sum_probs=72.8
Q ss_pred hHHhhhhhcCcccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CC-CCc
Q 025715 28 KLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGV 95 (249)
Q Consensus 28 KL~ei~~~~~~~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~-~~v 95 (249)
|+..+.++.+ +++|.+|||+|||.|+++.+++++.+ ++|+|+++++.. .+ ..+
T Consensus 50 k~~~~~~~~~-l~~G~~vLDiGcGwG~~~~~~a~~~g--------------~~v~gitlS~~Q~~~a~~~~~~~gl~~~v 114 (273)
T PF02353_consen 50 KLDLLCEKLG-LKPGDRVLDIGCGWGGLAIYAAERYG--------------CHVTGITLSEEQAEYARERIREAGLEDRV 114 (273)
T ss_dssp HHHHHHTTTT---TT-EEEEES-TTSHHHHHHHHHH----------------EEEEEES-HHHHHHHHHHHHCSTSSSTE
T ss_pred HHHHHHHHhC-CCCCCEEEEeCCCccHHHHHHHHHcC--------------cEEEEEECCHHHHHHHHHHHHhcCCCCce
Confidence 3444455554 58999999999999999999999875 799999999732 22 357
Q ss_pred eEeecCCCChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEec
Q 025715 96 IQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFR 169 (249)
Q Consensus 96 ~~~~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~ 169 (249)
++..+|..+. . .+||.|+|-+.+...|..+. ...+..+.++|||||.+++..+.
T Consensus 115 ~v~~~D~~~~----------~-~~fD~IvSi~~~Ehvg~~~~---------~~~f~~~~~~LkpgG~~~lq~i~ 168 (273)
T PF02353_consen 115 EVRLQDYRDL----------P-GKFDRIVSIEMFEHVGRKNY---------PAFFRKISRLLKPGGRLVLQTIT 168 (273)
T ss_dssp EEEES-GGG--------------S-SEEEEESEGGGTCGGGH---------HHHHHHHHHHSETTEEEEEEEEE
T ss_pred EEEEeecccc----------C-CCCCEEEEEechhhcChhHH---------HHHHHHHHHhcCCCcEEEEEecc
Confidence 7778887653 2 38999999887665554332 24678899999999999987664
No 37
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=99.22 E-value=3.8e-11 Score=105.54 Aligned_cols=126 Identities=25% Similarity=0.264 Sum_probs=90.9
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhhH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~~ 108 (249)
.+|.+|||+||||||.+.++++.+. ..+.|+|+|+++.+ ...++.....|.+...
T Consensus 84 ~~~~~VLD~CAapGgKt~~la~~~~------------~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~-- 149 (283)
T PF01189_consen 84 QPGERVLDMCAAPGGKTTHLAELMG------------NKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLD-- 149 (283)
T ss_dssp TTTSEEEESSCTTSHHHHHHHHHTT------------TTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHH--
T ss_pred cccccccccccCCCCceeeeeeccc------------chhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeecccccc--
Confidence 5789999999999999999999986 57899999999843 1345555555654432
Q ss_pred HHHHHhcCCCcccEEEeCCCCCCCCCCC--cC---------HHHHHHHHHHHHHHHHHhc----cCCCEEEEEEec---C
Q 025715 109 EVVIRHFDGCKADLVVCDGAPDVTGLHD--MD---------EFVQSQLILAGLTVVTHVL----KEGGKFIAKIFR---G 170 (249)
Q Consensus 109 ~~i~~~~~~~~~DlVlsD~~~~~~g~~~--~~---------~~~~~~l~~~~l~~a~~~L----k~gG~lv~k~~~---~ 170 (249)
.......||.|+.|.+++..|... .+ ......++..+|..|.+++ ||||.+|..+++ .
T Consensus 150 ----~~~~~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~e 225 (283)
T PF01189_consen 150 ----PKKPESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLSPE 225 (283)
T ss_dssp ----HHHHTTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHHGG
T ss_pred ----ccccccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHHHH
Confidence 111234699999999877665322 11 1223557889999999999 999999998884 3
Q ss_pred CCHHHHHHHHhcC
Q 025715 171 KDTSLLYCQLKLF 183 (249)
Q Consensus 171 ~~~~~l~~~l~~~ 183 (249)
++...+..+++++
T Consensus 226 ENE~vV~~fl~~~ 238 (283)
T PF01189_consen 226 ENEEVVEKFLKRH 238 (283)
T ss_dssp GTHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhC
Confidence 4455566677764
No 38
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.21 E-value=9.5e-11 Score=101.00 Aligned_cols=105 Identities=19% Similarity=0.165 Sum_probs=76.4
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC------CCCCceEeecCCCChhhHHHHHHh
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PIEGVIQVQGDITNARTAEVVIRH 114 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~------~~~~v~~~~gDi~~~~~~~~i~~~ 114 (249)
++.+|||+|||+|.++..+++. + ..|+++|+++.. ......++++|+.+.+
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~-~--------------~~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~~-------- 98 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRER-G--------------SQVTALDLSPPMLAQARQKDAADHYLAGDIESLP-------- 98 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHc-C--------------CeEEEEECCHHHHHHHHhhCCCCCEEEcCcccCc--------
Confidence 5679999999999999888753 2 689999999842 1233467888887643
Q ss_pred cCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCCCHHHHHHH
Q 025715 115 FDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQ 179 (249)
Q Consensus 115 ~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~~~l~~~ 179 (249)
+.+++||+|+|+.+..+. .+. ..++..+.++|+|||.+++.++......++...
T Consensus 99 ~~~~~fD~V~s~~~l~~~----~d~-------~~~l~~~~~~Lk~gG~l~~~~~~~~~~~el~~~ 152 (251)
T PRK10258 99 LATATFDLAWSNLAVQWC----GNL-------STALRELYRVVRPGGVVAFTTLVQGSLPELHQA 152 (251)
T ss_pred CCCCcEEEEEECchhhhc----CCH-------HHHHHHHHHHcCCCeEEEEEeCCCCchHHHHHH
Confidence 345789999998765432 121 356788899999999999987765555554443
No 39
>PLN02244 tocopherol O-methyltransferase
Probab=99.20 E-value=1.3e-10 Score=104.79 Aligned_cols=96 Identities=25% Similarity=0.299 Sum_probs=73.9
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CC-CCceEeecCCCChhh
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNART 107 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~-~~v~~~~gDi~~~~~ 107 (249)
+++.+|||+|||+|.++..++++.+ ++|+|+|+++.. .+ ++++++.+|+.+.+
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g--------------~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~- 181 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYG--------------ANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQP- 181 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcC--------------CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCC-
Confidence 5678999999999999999998754 799999999742 12 36889999998753
Q ss_pred HHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEe
Q 025715 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (249)
Q Consensus 108 ~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~ 168 (249)
+.+++||+|++..+.... .+. ...+..+.++|||||.|++..+
T Consensus 182 -------~~~~~FD~V~s~~~~~h~----~d~-------~~~l~e~~rvLkpGG~lvi~~~ 224 (340)
T PLN02244 182 -------FEDGQFDLVWSMESGEHM----PDK-------RKFVQELARVAAPGGRIIIVTW 224 (340)
T ss_pred -------CCCCCccEEEECCchhcc----CCH-------HHHHHHHHHHcCCCcEEEEEEe
Confidence 356799999997643221 121 2467888999999999998665
No 40
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.20 E-value=5.1e-10 Score=102.45 Aligned_cols=144 Identities=16% Similarity=0.073 Sum_probs=96.9
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC---------C-CCceEeecCCCChhhHH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP---------I-EGVIQVQGDITNARTAE 109 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~---------~-~~v~~~~gDi~~~~~~~ 109 (249)
.++.+|||+|||+|.++..++...+ ..+|+|+|+++.+. . .+++++++|+.+...
T Consensus 250 ~~~~rVLDLGcGSG~IaiaLA~~~p-------------~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l-- 314 (423)
T PRK14966 250 PENGRVWDLGTGSGAVAVTVALERP-------------DAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDM-- 314 (423)
T ss_pred CCCCEEEEEeChhhHHHHHHHHhCC-------------CCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhcccc--
Confidence 4567999999999999998887653 57999999998431 1 257889999865321
Q ss_pred HHHHhcCCCcccEEEeCCCCCCCCCCCc-------CHHH-------HHHHHHHHHHHHHHhccCCCEEEEEEecCCCHHH
Q 025715 110 VVIRHFDGCKADLVVCDGAPDVTGLHDM-------DEFV-------QSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSL 175 (249)
Q Consensus 110 ~i~~~~~~~~~DlVlsD~~~~~~g~~~~-------~~~~-------~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~~~ 175 (249)
...++||+|+||++....+.... ++.. ....++.++..+.+.|+|||.+++.+- ......
T Consensus 315 -----~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG-~~Q~e~ 388 (423)
T PRK14966 315 -----PSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHG-FDQGAA 388 (423)
T ss_pred -----ccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEEC-ccHHHH
Confidence 01357999999985322211100 1111 133467788889999999999987542 233445
Q ss_pred HHHHHhc-CCCeeEEecCCCCCCCCceEEEEEee
Q 025715 176 LYCQLKL-FFPVVTFAKPKSSRNSSIEAFAVCEN 208 (249)
Q Consensus 176 l~~~l~~-~f~~v~~~kP~~sr~~s~E~y~v~~g 208 (249)
+..+++. -|..+.+.+..+.+ +++++++.
T Consensus 389 V~~ll~~~Gf~~v~v~kDl~G~----dR~v~~~~ 418 (423)
T PRK14966 389 VRGVLAENGFSGVETLPDLAGL----DRVTLGKY 418 (423)
T ss_pred HHHHHHHCCCcEEEEEEcCCCC----cEEEEEEE
Confidence 5555554 38888888877766 57787653
No 41
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.19 E-value=6.1e-11 Score=89.89 Aligned_cols=103 Identities=21% Similarity=0.267 Sum_probs=71.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CC-CCceEeecCCCChhhHH
Q 025715 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNARTAE 109 (249)
Q Consensus 42 g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~-~~v~~~~gDi~~~~~~~ 109 (249)
|.+|||+|||+|.++.++++.. ..+++++|+++.. .. .+++++++|+.+..
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~--------------~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~--- 63 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG--------------AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLP--- 63 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC--------------TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHH---
T ss_pred CCEEEEcCcchHHHHHHHHHHC--------------CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhch---
Confidence 5799999999999999998875 2699999999843 12 45788999986532
Q ss_pred HHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEE
Q 025715 110 VVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKI 167 (249)
Q Consensus 110 ~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~ 167 (249)
..+..++||+|++|++..... .+.....++....++.+.++|+|||.+++.+
T Consensus 64 ---~~~~~~~~D~Iv~npP~~~~~---~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~ 115 (117)
T PF13659_consen 64 ---EPLPDGKFDLIVTNPPYGPRS---GDKAALRRLYSRFLEAAARLLKPGGVLVFIT 115 (117)
T ss_dssp ---HTCTTT-EEEEEE--STTSBT---T----GGCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ---hhccCceeEEEEECCCCcccc---ccchhhHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 235668999999998653221 1111111244567889999999999999854
No 42
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.19 E-value=6.1e-11 Score=102.56 Aligned_cols=96 Identities=26% Similarity=0.313 Sum_probs=73.2
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC----CCCCceEeecCCCChhhHHHHHHhc
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----PIEGVIQVQGDITNARTAEVVIRHF 115 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~----~~~~v~~~~gDi~~~~~~~~i~~~~ 115 (249)
.++.+|||+|||+|.++..++++.+ .++|+|+|+++.. .-.+++++++|+.+..
T Consensus 28 ~~~~~vLDlGcG~G~~~~~l~~~~p-------------~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~--------- 85 (255)
T PRK14103 28 ERARRVVDLGCGPGNLTRYLARRWP-------------GAVIEALDSSPEMVAAARERGVDARTGDVRDWK--------- 85 (255)
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCC-------------CCEEEEEECCHHHHHHHHhcCCcEEEcChhhCC---------
Confidence 4678999999999999999988763 4799999999843 1246888889876431
Q ss_pred CCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEe
Q 025715 116 DGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (249)
Q Consensus 116 ~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~ 168 (249)
..++||+|+++....+. .+. ..++..+.++|||||.|++.+.
T Consensus 86 ~~~~fD~v~~~~~l~~~----~d~-------~~~l~~~~~~LkpgG~l~~~~~ 127 (255)
T PRK14103 86 PKPDTDVVVSNAALQWV----PEH-------ADLLVRWVDELAPGSWIAVQVP 127 (255)
T ss_pred CCCCceEEEEehhhhhC----CCH-------HHHHHHHHHhCCCCcEEEEEcC
Confidence 24689999998765432 122 2467788999999999998654
No 43
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.19 E-value=2.4e-10 Score=104.02 Aligned_cols=131 Identities=18% Similarity=0.180 Sum_probs=87.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC--------------CCCceEeecCCCChhh
Q 025715 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP--------------IEGVIQVQGDITNART 107 (249)
Q Consensus 42 g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~--------------~~~v~~~~gDi~~~~~ 107 (249)
+.+|||||||+|.++..++++.+ ..+|+++|+++++. ..+++++.+|..+.
T Consensus 229 ~~~VLDLGCGtGvi~i~la~~~P-------------~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~-- 293 (378)
T PRK15001 229 EGEIVDLGCGNGVIGLTLLDKNP-------------QAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG-- 293 (378)
T ss_pred CCeEEEEeccccHHHHHHHHhCC-------------CCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcccccc--
Confidence 35999999999999999998764 57999999998531 12456777776542
Q ss_pred HHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCCCHHHHHHHHhcCCCee
Q 025715 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVV 187 (249)
Q Consensus 108 ~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~~~l~~~l~~~f~~v 187 (249)
+.+.+||+|+||+++... .. ... ......+..+.++|+|||.|.+..-+..... ..+++.|..+
T Consensus 294 -------~~~~~fDlIlsNPPfh~~-~~-~~~----~ia~~l~~~a~~~LkpGG~L~iV~nr~l~y~---~~L~~~fg~~ 357 (378)
T PRK15001 294 -------VEPFRFNAVLCNPPFHQQ-HA-LTD----NVAWEMFHHARRCLKINGELYIVANRHLDYF---HKLKKIFGNC 357 (378)
T ss_pred -------CCCCCEEEEEECcCcccC-cc-CCH----HHHHHHHHHHHHhcccCCEEEEEEecCcCHH---HHHHHHcCCc
Confidence 234589999999876432 21 111 2234678889999999999998654443333 3455567766
Q ss_pred EEecCCCCCCCCceEEEEEeecc
Q 025715 188 TFAKPKSSRNSSIEAFAVCENYF 210 (249)
Q Consensus 188 ~~~kP~~sr~~s~E~y~v~~g~~ 210 (249)
..+ ++.-.|+|-+..+
T Consensus 358 ~~v-------a~~~kf~vl~a~k 373 (378)
T PRK15001 358 TTI-------ATNNKFVVLKAVK 373 (378)
T ss_pred eEE-------ccCCCEEEEEEEe
Confidence 653 1112566666555
No 44
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.18 E-value=1.3e-10 Score=101.46 Aligned_cols=99 Identities=18% Similarity=0.243 Sum_probs=74.5
Q ss_pred ccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhh
Q 025715 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNART 107 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~ 107 (249)
+++|.+|||+|||+|.++..+++..+ ..++|+++|+++.. .+.+++++.+|+.+.+
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g------------~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~- 141 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVG------------PTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALP- 141 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhC------------CCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCC-
Confidence 36889999999999999988887765 45789999998732 1357788889886643
Q ss_pred HHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEe
Q 025715 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (249)
Q Consensus 108 ~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~ 168 (249)
+.+++||+|+++...... .+. ...+..+.++|||||+|++.-+
T Consensus 142 -------~~~~~fD~Vi~~~v~~~~----~d~-------~~~l~~~~r~LkpGG~l~i~~~ 184 (272)
T PRK11873 142 -------VADNSVDVIISNCVINLS----PDK-------ERVFKEAFRVLKPGGRFAISDV 184 (272)
T ss_pred -------CCCCceeEEEEcCcccCC----CCH-------HHHHHHHHHHcCCCcEEEEEEe
Confidence 345689999998754432 121 2468889999999999998543
No 45
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.18 E-value=1.9e-10 Score=95.16 Aligned_cols=94 Identities=20% Similarity=0.183 Sum_probs=71.2
Q ss_pred cccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChh
Q 025715 38 IFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNAR 106 (249)
Q Consensus 38 ~~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~ 106 (249)
++.++.+|||+|||+|..+..++...+ .++|+++|+++.. .+++++++++|+.+..
T Consensus 42 ~l~~g~~VLDiGcGtG~~al~la~~~~-------------~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~ 108 (187)
T PRK00107 42 YLPGGERVLDVGSGAGFPGIPLAIARP-------------ELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFG 108 (187)
T ss_pred hcCCCCeEEEEcCCCCHHHHHHHHHCC-------------CCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCC
Confidence 345689999999999999999887643 5899999999732 2346888999886632
Q ss_pred hHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEe
Q 025715 107 TAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (249)
Q Consensus 107 ~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~ 168 (249)
. .++||+|+++... + ....+..+.++|+|||.+++-..
T Consensus 109 --------~-~~~fDlV~~~~~~--------~-------~~~~l~~~~~~LkpGG~lv~~~~ 146 (187)
T PRK00107 109 --------Q-EEKFDVVTSRAVA--------S-------LSDLVELCLPLLKPGGRFLALKG 146 (187)
T ss_pred --------C-CCCccEEEEcccc--------C-------HHHHHHHHHHhcCCCeEEEEEeC
Confidence 1 4689999997421 1 12467888999999999998543
No 46
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.18 E-value=3.9e-10 Score=93.04 Aligned_cols=113 Identities=18% Similarity=0.189 Sum_probs=80.4
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhhH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~~ 108 (249)
.++.+|||+|||+|.++..++++.+ .++|+++|+++.. .+.+++++++|+..
T Consensus 30 ~~~~~vLDiG~G~G~~~~~la~~~~-------------~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~---- 92 (187)
T PRK08287 30 HRAKHLIDVGAGTGSVSIEAALQFP-------------SLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPI---- 92 (187)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHCC-------------CCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchh----
Confidence 4778999999999999999988753 5799999999732 13467778887632
Q ss_pred HHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCCCHHHHHHHHhc-CCCee
Q 025715 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKL-FFPVV 187 (249)
Q Consensus 109 ~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~~~l~~~l~~-~f~~v 187 (249)
.+ .++||+|++++... . ....+..+.+.|+|||.+++.....++..++...+++ .|+.+
T Consensus 93 -----~~-~~~~D~v~~~~~~~-----~---------~~~~l~~~~~~Lk~gG~lv~~~~~~~~~~~~~~~l~~~g~~~~ 152 (187)
T PRK08287 93 -----EL-PGKADAIFIGGSGG-----N---------LTAIIDWSLAHLHPGGRLVLTFILLENLHSALAHLEKCGVSEL 152 (187)
T ss_pred -----hc-CcCCCEEEECCCcc-----C---------HHHHHHHHHHhcCCCeEEEEEEecHhhHHHHHHHHHHCCCCcc
Confidence 12 25799999975321 1 1235677899999999999865555666677766654 36544
Q ss_pred EE
Q 025715 188 TF 189 (249)
Q Consensus 188 ~~ 189 (249)
.+
T Consensus 153 ~~ 154 (187)
T PRK08287 153 DC 154 (187)
T ss_pred eE
Confidence 43
No 47
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.18 E-value=5.8e-10 Score=98.11 Aligned_cols=138 Identities=17% Similarity=0.207 Sum_probs=93.1
Q ss_pred CeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCC-CceEeecCCCChhhHHH
Q 025715 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIE-GVIQVQGDITNARTAEV 110 (249)
Q Consensus 43 ~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~-~v~~~~gDi~~~~~~~~ 110 (249)
.+|||+|||+|.++..++...+ ..+|+|+|+++.+ .+. +++++++|+.+.
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~-------------~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~----- 177 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFP-------------NAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEP----- 177 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCC-------------CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhcc-----
Confidence 6899999999999999998763 4799999999843 122 388899998652
Q ss_pred HHHhcCCCcccEEEeCCCCCCCCC-------CCcCHHH-------HHHHHHHHHHHHHHhccCCCEEEEEEecCCCHHHH
Q 025715 111 VIRHFDGCKADLVVCDGAPDVTGL-------HDMDEFV-------QSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLL 176 (249)
Q Consensus 111 i~~~~~~~~~DlVlsD~~~~~~g~-------~~~~~~~-------~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~~~l 176 (249)
+...+||+|+||++...... ....... -...+...+..+.++|+|||.+++.+.. .....+
T Consensus 178 ----~~~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~-~q~~~~ 252 (284)
T TIGR00536 178 ----LAGQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGN-WQQKSL 252 (284)
T ss_pred ----CcCCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECc-cHHHHH
Confidence 23347999999974321110 0011110 1345678899999999999999986642 223344
Q ss_pred HHHHh--cCCCeeEEecCCCCCCCCceEEEEEe
Q 025715 177 YCQLK--LFFPVVTFAKPKSSRNSSIEAFAVCE 207 (249)
Q Consensus 177 ~~~l~--~~f~~v~~~kP~~sr~~s~E~y~v~~ 207 (249)
..++. ..|..+.++|..+.+ +++++++
T Consensus 253 ~~~~~~~~~~~~~~~~~D~~g~----~R~~~~~ 281 (284)
T TIGR00536 253 KELLRIKFTWYDVENGRDLNGK----ERVVLGF 281 (284)
T ss_pred HHHHHhcCCCceeEEecCCCCC----ceEEEEE
Confidence 44444 247888888876665 4666653
No 48
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.16 E-value=1.6e-10 Score=99.86 Aligned_cols=95 Identities=23% Similarity=0.325 Sum_probs=73.6
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC------CCCCceEeecCCCChhhHHHHHH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PIEGVIQVQGDITNARTAEVVIR 113 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~------~~~~v~~~~gDi~~~~~~~~i~~ 113 (249)
.++.+|||+|||+|.++..+++..+ .++|+|+|+++.. ..+++.++.+|+.+..
T Consensus 30 ~~~~~vLDiGcG~G~~~~~la~~~~-------------~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~------- 89 (258)
T PRK01683 30 ENPRYVVDLGCGPGNSTELLVERWP-------------AARITGIDSSPAMLAEARSRLPDCQFVEADIASWQ------- 89 (258)
T ss_pred cCCCEEEEEcccCCHHHHHHHHHCC-------------CCEEEEEECCHHHHHHHHHhCCCCeEEECchhccC-------
Confidence 5678999999999999999988764 4799999999742 2467888889986532
Q ss_pred hcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEE
Q 025715 114 HFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKI 167 (249)
Q Consensus 114 ~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~ 167 (249)
...+||+|+++....+. .+. ..++..+.++|||||.+++.+
T Consensus 90 --~~~~fD~v~~~~~l~~~----~d~-------~~~l~~~~~~LkpgG~~~~~~ 130 (258)
T PRK01683 90 --PPQALDLIFANASLQWL----PDH-------LELFPRLVSLLAPGGVLAVQM 130 (258)
T ss_pred --CCCCccEEEEccChhhC----CCH-------HHHHHHHHHhcCCCcEEEEEC
Confidence 23589999998765432 122 246788899999999999864
No 49
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.16 E-value=3.5e-10 Score=86.12 Aligned_cols=94 Identities=21% Similarity=0.246 Sum_probs=69.9
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhhH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~~ 108 (249)
.++.+|||+|||+|.++..++++.+ .++|+++|+++.. ..++++++.+|+.....
T Consensus 18 ~~~~~vldlG~G~G~~~~~l~~~~~-------------~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~- 83 (124)
T TIGR02469 18 RPGDVLWDIGAGSGSITIEAARLVP-------------NGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALE- 83 (124)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHCC-------------CceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccCh-
Confidence 4678999999999999999998764 4799999998732 13467777888654210
Q ss_pred HHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEE
Q 025715 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKI 167 (249)
Q Consensus 109 ~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~ 167 (249)
. ...+||.|++++... . ....+..+.+.|+|||.|++.+
T Consensus 84 -----~-~~~~~D~v~~~~~~~--------~------~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 84 -----D-SLPEPDRVFIGGSGG--------L------LQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred -----h-hcCCCCEEEECCcch--------h------HHHHHHHHHHHcCCCCEEEEEe
Confidence 1 125899999975321 1 1357889999999999999864
No 50
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.15 E-value=4.4e-10 Score=97.20 Aligned_cols=121 Identities=20% Similarity=0.188 Sum_probs=82.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC--------CCCceEeecCCCChhhHHHHHH
Q 025715 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP--------IEGVIQVQGDITNARTAEVVIR 113 (249)
Q Consensus 42 g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~--------~~~v~~~~gDi~~~~~~~~i~~ 113 (249)
+.+|||+|||+|.++..+++..+ ..+|+++|+++.+. ..+++++++|+.+.. ..
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~-------------~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l-----~~ 148 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALD-------------GIELHAADIDPAAVRCARRNLADAGGTVHEGDLYDAL-----PT 148 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCC-------------CCEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhc-----ch
Confidence 45899999999999999988764 46899999998431 134678899986531 11
Q ss_pred hcCCCcccEEEeCCCCCCCCCC-CcC-H------H-------HHHHHHHHHHHHHHHhccCCCEEEEEEecCCCHHHHHH
Q 025715 114 HFDGCKADLVVCDGAPDVTGLH-DMD-E------F-------VQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYC 178 (249)
Q Consensus 114 ~~~~~~~DlVlsD~~~~~~g~~-~~~-~------~-------~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~~~l~~ 178 (249)
.+ .++||+|++|++....+.. ..+ + . .-.+.++..+..+.++|+|||.+++. ........+..
T Consensus 149 ~~-~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~-~~~~~~~~v~~ 226 (251)
T TIGR03704 149 AL-RGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVE-TSERQAPLAVE 226 (251)
T ss_pred hc-CCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE-ECcchHHHHHH
Confidence 12 2579999999864332211 000 0 0 11334678888999999999999984 44455666777
Q ss_pred HHhc
Q 025715 179 QLKL 182 (249)
Q Consensus 179 ~l~~ 182 (249)
.++.
T Consensus 227 ~l~~ 230 (251)
T TIGR03704 227 AFAR 230 (251)
T ss_pred HHHH
Confidence 6765
No 51
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.14 E-value=4.8e-10 Score=94.52 Aligned_cols=116 Identities=24% Similarity=0.297 Sum_probs=85.2
Q ss_pred HHhccchhhhhhHHhhhhhcCcccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC-----
Q 025715 17 KEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----- 91 (249)
Q Consensus 17 ~~~~~~~ra~~KL~ei~~~~~~~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~----- 91 (249)
.+..|+||+++||..+.+.|.+..+|..+||+|+.||||++.++++. ..+|+|+|......
T Consensus 55 ~~~~yVSRG~~KL~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~g--------------Ak~VyavDVG~~Ql~~kLR 120 (245)
T COG1189 55 EEQPYVSRGGLKLEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRG--------------AKHVYAVDVGYGQLHWKLR 120 (245)
T ss_pred cCcCccccHHHHHHHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcC--------------CcEEEEEEccCCccCHhHh
Confidence 35679999999999999999998999999999999999999999874 37999999987432
Q ss_pred -CCCceEe-ecCCCChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEE
Q 025715 92 -IEGVIQV-QGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (249)
Q Consensus 92 -~~~v~~~-~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k 166 (249)
-++|..+ .-|+..... +.+. +..|++++|.++-. ...+|-.+..+++++|.++.-
T Consensus 121 ~d~rV~~~E~tN~r~l~~-----~~~~-~~~d~~v~DvSFIS--------------L~~iLp~l~~l~~~~~~~v~L 177 (245)
T COG1189 121 NDPRVIVLERTNVRYLTP-----EDFT-EKPDLIVIDVSFIS--------------LKLILPALLLLLKDGGDLVLL 177 (245)
T ss_pred cCCcEEEEecCChhhCCH-----HHcc-cCCCeEEEEeehhh--------------HHHHHHHHHHhcCCCceEEEE
Confidence 2454433 335544321 1233 37999999986521 123455666777887777653
No 52
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.14 E-value=2e-10 Score=96.16 Aligned_cols=120 Identities=11% Similarity=0.060 Sum_probs=79.6
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCC-CChhh
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDI-TNART 107 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi-~~~~~ 107 (249)
+++.+|||+|||+|.++..+++..+ ...|+|+|+++.. .++++.++++|+ ..
T Consensus 39 ~~~~~VLDiGcGtG~~~~~la~~~p-------------~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~--- 102 (202)
T PRK00121 39 NDAPIHLEIGFGKGEFLVEMAKANP-------------DINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEV--- 102 (202)
T ss_pred CCCCeEEEEccCCCHHHHHHHHHCC-------------CccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHH---
Confidence 3678999999999999999988764 4789999999832 235788899988 32
Q ss_pred HHHHHHhcCCCcccEEEeCCCCCCCCC-CCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCCCHHHHHHHHhc
Q 025715 108 AEVVIRHFDGCKADLVVCDGAPDVTGL-HDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKL 182 (249)
Q Consensus 108 ~~~i~~~~~~~~~DlVlsD~~~~~~g~-~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~~~l~~~l~~ 182 (249)
+...+.+++||+|+++.+..+... .... .......+..+.++|||||.|++.+........+...++.
T Consensus 103 ---l~~~~~~~~~D~V~~~~~~p~~~~~~~~~----~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~~~~~~~~~~ 171 (202)
T PRK00121 103 ---LLDMFPDGSLDRIYLNFPDPWPKKRHHKR----RLVQPEFLALYARKLKPGGEIHFATDWEGYAEYMLEVLSA 171 (202)
T ss_pred ---HHHHcCccccceEEEECCCCCCCcccccc----ccCCHHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHh
Confidence 222245678999999764322110 0000 0012457888999999999999854333333445554443
No 53
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.13 E-value=8.2e-11 Score=85.10 Aligned_cols=87 Identities=24% Similarity=0.368 Sum_probs=65.2
Q ss_pred EEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC--------CCCCceEeecCCCChhhHHHHHHhcCC
Q 025715 46 VDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--------PIEGVIQVQGDITNARTAEVVIRHFDG 117 (249)
Q Consensus 46 LDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~--------~~~~v~~~~gDi~~~~~~~~i~~~~~~ 117 (249)
||+|||+|..+..++++ + ...|+++|+++.. .-.++.+.++|+++.+ +++
T Consensus 1 LdiG~G~G~~~~~l~~~-~-------------~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~--------~~~ 58 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-G-------------GASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLP--------FPD 58 (95)
T ss_dssp EEET-TTSHHHHHHHHT-T-------------TCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSS--------S-T
T ss_pred CEecCcCCHHHHHHHhc-c-------------CCEEEEEeCCHHHHHHHHhcccccCchheeehHHhCc--------ccc
Confidence 89999999999999987 3 3799999999842 1245668899998875 467
Q ss_pred CcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEE
Q 025715 118 CKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIA 165 (249)
Q Consensus 118 ~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~ 165 (249)
++||+|++.....+. +. ...++..+.|+|||||.+++
T Consensus 59 ~sfD~v~~~~~~~~~-----~~------~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 59 NSFDVVFSNSVLHHL-----ED------PEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp T-EEEEEEESHGGGS-----SH------HHHHHHHHHHHEEEEEEEEE
T ss_pred ccccccccccceeec-----cC------HHHHHHHHHHHcCcCeEEeC
Confidence 899999998765432 11 24678999999999999986
No 54
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.12 E-value=2.2e-10 Score=99.70 Aligned_cols=98 Identities=13% Similarity=0.118 Sum_probs=71.9
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC---------CCCCceEeecCCCChhhHHH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------PIEGVIQVQGDITNARTAEV 110 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~---------~~~~v~~~~gDi~~~~~~~~ 110 (249)
+++.+|||+|||+|..+..+++..+ ++|+++|+++.. ...++.+..+|+.+.+
T Consensus 51 ~~~~~VLDiGcG~G~~a~~la~~~~--------------~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~---- 112 (263)
T PTZ00098 51 NENSKVLDIGSGLGGGCKYINEKYG--------------AHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKD---- 112 (263)
T ss_pred CCCCEEEEEcCCCChhhHHHHhhcC--------------CEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCC----
Confidence 6788999999999999988876543 699999999732 1236888889987642
Q ss_pred HHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEe
Q 025715 111 VIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (249)
Q Consensus 111 i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~ 168 (249)
+++++||+|++........ .+. ...++..+.++|||||.|++..+
T Consensus 113 ----~~~~~FD~V~s~~~l~h~~---~~d------~~~~l~~i~r~LkPGG~lvi~d~ 157 (263)
T PTZ00098 113 ----FPENTFDMIYSRDAILHLS---YAD------KKKLFEKCYKWLKPNGILLITDY 157 (263)
T ss_pred ----CCCCCeEEEEEhhhHHhCC---HHH------HHHHHHHHHHHcCCCcEEEEEEe
Confidence 3557899999954321110 001 23578889999999999998765
No 55
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.12 E-value=7.3e-10 Score=99.45 Aligned_cols=113 Identities=18% Similarity=0.130 Sum_probs=79.1
Q ss_pred ccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhh
Q 025715 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNART 107 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~ 107 (249)
.++|.+|||.|||+|+++..++. .+ ..++|+|+++.. .++++.+.++|+++.+
T Consensus 180 ~~~g~~vLDp~cGtG~~lieaa~-~~--------------~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~- 243 (329)
T TIGR01177 180 VTEGDRVLDPFCGTGGFLIEAGL-MG--------------AKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLP- 243 (329)
T ss_pred CCCcCEEEECCCCCCHHHHHHHH-hC--------------CeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCC-
Confidence 36889999999999999877654 33 689999999732 1345677889988753
Q ss_pred HHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCCCHHHH
Q 025715 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLL 176 (249)
Q Consensus 108 ~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~~~l 176 (249)
+..++||+|++|++....... .......+...++..+.++|+|||++++.+....+...+
T Consensus 244 -------~~~~~~D~Iv~dPPyg~~~~~--~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~~~~~~ 303 (329)
T TIGR01177 244 -------LSSESVDAIATDPPYGRSTTA--AGDGLESLYERSLEEFHEVLKSEGWIVYAVPTRIDLESL 303 (329)
T ss_pred -------cccCCCCEEEECCCCcCcccc--cCCchHHHHHHHHHHHHHHccCCcEEEEEEcCCCCHHHH
Confidence 234689999999764321110 011123456778999999999999999866544454444
No 56
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.12 E-value=1.2e-09 Score=91.07 Aligned_cols=111 Identities=14% Similarity=0.208 Sum_probs=79.3
Q ss_pred ccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------C-CCCceEeecCCCChh
Q 025715 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------P-IEGVIQVQGDITNAR 106 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~-~~~v~~~~gDi~~~~ 106 (249)
+.++.+|||+|||+|.++..++...+ +.++|+++|+++.. . ..++.++.+|..+.
T Consensus 38 ~~~~~~vlDlG~GtG~~s~~~a~~~~------------~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~- 104 (198)
T PRK00377 38 LRKGDMILDIGCGTGSVTVEASLLVG------------ETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEI- 104 (198)
T ss_pred CCCcCEEEEeCCcCCHHHHHHHHHhC------------CCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhh-
Confidence 35788999999999999999988765 35799999999732 1 24677788887542
Q ss_pred hHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCCCHHHHHHHHhc
Q 025715 107 TAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKL 182 (249)
Q Consensus 107 ~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~~~l~~~l~~ 182 (249)
.... ..+||+|++++.. . + ....+..+.++|+|||.+++.....+....+...++.
T Consensus 105 -----l~~~-~~~~D~V~~~~~~-----~--~-------~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~ 160 (198)
T PRK00377 105 -----LFTI-NEKFDRIFIGGGS-----E--K-------LKEIISASWEIIKKGGRIVIDAILLETVNNALSALEN 160 (198)
T ss_pred -----Hhhc-CCCCCEEEECCCc-----c--c-------HHHHHHHHHHHcCCCcEEEEEeecHHHHHHHHHHHHH
Confidence 1112 2579999986521 0 1 1346788899999999999865555556667666654
No 57
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.11 E-value=7.7e-10 Score=93.70 Aligned_cols=114 Identities=24% Similarity=0.260 Sum_probs=80.6
Q ss_pred hhhhHHhhhhhcCcccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-------CCCCceE
Q 025715 25 SAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-------PIEGVIQ 97 (249)
Q Consensus 25 a~~KL~ei~~~~~~~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-------~~~~v~~ 97 (249)
.+..|.+....... ..+.+|||+|||+|.++..+++..+ ..+++++|+++.. ..+++.+
T Consensus 19 ~~~~l~~~~~~~~~-~~~~~vLDlG~G~G~~~~~l~~~~~-------------~~~~~~~D~~~~~~~~~~~~~~~~~~~ 84 (240)
T TIGR02072 19 MAKRLLALLKEKGI-FIPASVLDIGCGTGYLTRALLKRFP-------------QAEFIALDISAGMLAQAKTKLSENVQF 84 (240)
T ss_pred HHHHHHHHhhhhcc-CCCCeEEEECCCccHHHHHHHHhCC-------------CCcEEEEeChHHHHHHHHHhcCCCCeE
Confidence 44555555444332 2347999999999999999988753 4679999998742 1136788
Q ss_pred eecCCCChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCC
Q 025715 98 VQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGK 171 (249)
Q Consensus 98 ~~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~ 171 (249)
+.+|+.+.+ +.+++||+|+++....+.. +. ...+..+.++|+|||.+++..+...
T Consensus 85 ~~~d~~~~~--------~~~~~fD~vi~~~~l~~~~----~~-------~~~l~~~~~~L~~~G~l~~~~~~~~ 139 (240)
T TIGR02072 85 ICGDAEKLP--------LEDSSFDLIVSNLALQWCD----DL-------SQALSELARVLKPGGLLAFSTFGPG 139 (240)
T ss_pred EecchhhCC--------CCCCceeEEEEhhhhhhcc----CH-------HHHHHHHHHHcCCCcEEEEEeCCcc
Confidence 889887643 2457899999987544321 21 2467888999999999999876443
No 58
>PRK14967 putative methyltransferase; Provisional
Probab=99.11 E-value=9e-10 Score=93.48 Aligned_cols=132 Identities=16% Similarity=0.093 Sum_probs=83.9
Q ss_pred hhHHhhhhhcCcccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC--------C--CCce
Q 025715 27 FKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP--------I--EGVI 96 (249)
Q Consensus 27 ~KL~ei~~~~~~~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~--------~--~~v~ 96 (249)
..|.+...... +.++.+|||+|||+|.++..+++. + ..+|+++|+++... . .+++
T Consensus 23 ~~l~~~l~~~~-~~~~~~vLDlGcG~G~~~~~la~~-~-------------~~~v~~vD~s~~~l~~a~~n~~~~~~~~~ 87 (223)
T PRK14967 23 QLLADALAAEG-LGPGRRVLDLCTGSGALAVAAAAA-G-------------AGSVTAVDISRRAVRSARLNALLAGVDVD 87 (223)
T ss_pred HHHHHHHHhcc-cCCCCeEEEecCCHHHHHHHHHHc-C-------------CCeEEEEECCHHHHHHHHHHHHHhCCeeE
Confidence 44555554444 357789999999999999988864 3 25899999998421 1 1356
Q ss_pred EeecCCCChhhHHHHHHhcCCCcccEEEeCCCCCCCCCC---CcCHH-------HHHHHHHHHHHHHHHhccCCCEEEEE
Q 025715 97 QVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLH---DMDEF-------VQSQLILAGLTVVTHVLKEGGKFIAK 166 (249)
Q Consensus 97 ~~~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~---~~~~~-------~~~~l~~~~l~~a~~~Lk~gG~lv~k 166 (249)
++++|+.+. +..++||+|++|++....... ..... ....++..++..+.++|||||.+++.
T Consensus 88 ~~~~d~~~~---------~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~ 158 (223)
T PRK14967 88 VRRGDWARA---------VEFRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLV 158 (223)
T ss_pred EEECchhhh---------ccCCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 777887542 234689999999743221110 00000 11234567788999999999999974
Q ss_pred EecCCCHHHHHHHHhc
Q 025715 167 IFRGKDTSLLYCQLKL 182 (249)
Q Consensus 167 ~~~~~~~~~l~~~l~~ 182 (249)
........+++..++.
T Consensus 159 ~~~~~~~~~~~~~l~~ 174 (223)
T PRK14967 159 QSELSGVERTLTRLSE 174 (223)
T ss_pred EecccCHHHHHHHHHH
Confidence 3333345566655543
No 59
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.10 E-value=1.2e-09 Score=94.42 Aligned_cols=105 Identities=15% Similarity=0.171 Sum_probs=74.0
Q ss_pred hhhhhcCcccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------C-CCCceEe
Q 025715 31 QIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------P-IEGVIQV 98 (249)
Q Consensus 31 ei~~~~~~~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~-~~~v~~~ 98 (249)
++.+... .++.+|||+|||+|.++..+++. + .+|+++|+++.. . .++++++
T Consensus 36 ~~l~~l~--~~~~~vLDiGcG~G~~a~~la~~-g--------------~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~ 98 (255)
T PRK11036 36 RLLAELP--PRPLRVLDAGGGEGQTAIKLAEL-G--------------HQVILCDLSAEMIQRAKQAAEAKGVSDNMQFI 98 (255)
T ss_pred HHHHhcC--CCCCEEEEeCCCchHHHHHHHHc-C--------------CEEEEEECCHHHHHHHHHHHHhcCCccceEEE
Confidence 4444443 45689999999999999999875 2 689999999732 1 1457888
Q ss_pred ecCCCChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecC
Q 025715 99 QGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRG 170 (249)
Q Consensus 99 ~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~ 170 (249)
++|+.+.. .+.+++||+|++....... .+. ..++..+.++|||||.+++..+..
T Consensus 99 ~~d~~~l~-------~~~~~~fD~V~~~~vl~~~----~~~-------~~~l~~~~~~LkpgG~l~i~~~n~ 152 (255)
T PRK11036 99 HCAAQDIA-------QHLETPVDLILFHAVLEWV----ADP-------KSVLQTLWSVLRPGGALSLMFYNA 152 (255)
T ss_pred EcCHHHHh-------hhcCCCCCEEEehhHHHhh----CCH-------HHHHHHHHHHcCCCeEEEEEEECc
Confidence 88886532 1234789999997654321 121 246788899999999999855543
No 60
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.09 E-value=1.7e-09 Score=102.30 Aligned_cols=134 Identities=14% Similarity=0.084 Sum_probs=90.2
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CC-CCceEeecCCCChhhH
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNARTA 108 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~-~~v~~~~gDi~~~~~~ 108 (249)
++.+|||+|||+|.++..++...+ ..+|+|+|+++.+ .+ .+++++++|+.+.
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~p-------------~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~--- 201 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCELP-------------NANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFEN--- 201 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHCC-------------CCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhh---
Confidence 346899999999999999888764 5799999999742 12 3577788887542
Q ss_pred HHHHHhcCCCcccEEEeCCCCCCCCC--------CCcCHH-------HHHHHHHHHHHHHHHhccCCCEEEEEEecCCCH
Q 025715 109 EVVIRHFDGCKADLVVCDGAPDVTGL--------HDMDEF-------VQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDT 173 (249)
Q Consensus 109 ~~i~~~~~~~~~DlVlsD~~~~~~g~--------~~~~~~-------~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~ 173 (249)
+..++||+|+||++...... .+.+.. ..++.+..++..+.++|+|||.+++.+- ....
T Consensus 202 ------~~~~~fDlIvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig-~~q~ 274 (506)
T PRK01544 202 ------IEKQKFDFIVSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIG-FKQE 274 (506)
T ss_pred ------CcCCCccEEEECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEEC-CchH
Confidence 23458999999985322111 001111 1234567788899999999999998542 2334
Q ss_pred HHHHHHHhc-CCCeeEEecCCCCCC
Q 025715 174 SLLYCQLKL-FFPVVTFAKPKSSRN 197 (249)
Q Consensus 174 ~~l~~~l~~-~f~~v~~~kP~~sr~ 197 (249)
..+..++.. -|..+.+.+..+.+.
T Consensus 275 ~~v~~~~~~~g~~~~~~~~D~~g~~ 299 (506)
T PRK01544 275 EAVTQIFLDHGYNIESVYKDLQGHS 299 (506)
T ss_pred HHHHHHHHhcCCCceEEEecCCCCc
Confidence 445555543 477788888777764
No 61
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.09 E-value=2.5e-09 Score=87.63 Aligned_cols=118 Identities=19% Similarity=0.145 Sum_probs=79.9
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC----------CCCceEeecCCCChhhHHH
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----------IEGVIQVQGDITNARTAEV 110 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~----------~~~v~~~~gDi~~~~~~~~ 110 (249)
++.+|||+|||+|.++..++++. .+|+++|+++... -.+++++.+|+.+.
T Consensus 19 ~~~~vLdlG~G~G~~~~~l~~~~---------------~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~----- 78 (179)
T TIGR00537 19 KPDDVLEIGAGTGLVAIRLKGKG---------------KCILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKG----- 78 (179)
T ss_pred CCCeEEEeCCChhHHHHHHHhcC---------------CEEEEEECCHHHHHHHHHHHHHcCCceEEEEcccccc-----
Confidence 45799999999999999988752 3899999998421 12467788887652
Q ss_pred HHHhcCCCcccEEEeCCCCCCCC-CCCcCHHH---------HHHHHHHHHHHHHHhccCCCEEEEEEecCCCHHHHHHHH
Q 025715 111 VIRHFDGCKADLVVCDGAPDVTG-LHDMDEFV---------QSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQL 180 (249)
Q Consensus 111 i~~~~~~~~~DlVlsD~~~~~~g-~~~~~~~~---------~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~~~l~~~l 180 (249)
. .++||+|++|++..... ......+. ...++...+..+.++|+|||.+++.........+++..+
T Consensus 79 ----~-~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~~~~~~~~l 153 (179)
T TIGR00537 79 ----V-RGKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLNGEPDTFDKL 153 (179)
T ss_pred ----c-CCcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccCChHHHHHHH
Confidence 1 35899999997542111 11001110 123456788999999999999998655444466677766
Q ss_pred hcC
Q 025715 181 KLF 183 (249)
Q Consensus 181 ~~~ 183 (249)
++.
T Consensus 154 ~~~ 156 (179)
T TIGR00537 154 DER 156 (179)
T ss_pred HhC
Confidence 654
No 62
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.08 E-value=1.6e-10 Score=95.91 Aligned_cols=117 Identities=24% Similarity=0.294 Sum_probs=88.9
Q ss_pred HHHhccchhhhhhHHhhhhhcCcccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----
Q 025715 16 AKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----- 90 (249)
Q Consensus 16 a~~~~~~~ra~~KL~ei~~~~~~~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~----- 90 (249)
.+.+.-++|-+..|.. +... .+..+|+|||||||.-+.++++|.+ ...|+|+|-++..
T Consensus 9 l~F~~eRtRPa~dLla---~Vp~-~~~~~v~DLGCGpGnsTelL~~RwP-------------~A~i~GiDsS~~Mla~Aa 71 (257)
T COG4106 9 LQFEDERTRPARDLLA---RVPL-ERPRRVVDLGCGPGNSTELLARRWP-------------DAVITGIDSSPAMLAKAA 71 (257)
T ss_pred HHHHHhccCcHHHHHh---hCCc-cccceeeecCCCCCHHHHHHHHhCC-------------CCeEeeccCCHHHHHHHH
Confidence 4455567777766652 2222 3457999999999999999999985 6899999999842
Q ss_pred -CCCCceEeecCCCChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEec
Q 025715 91 -PIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFR 169 (249)
Q Consensus 91 -~~~~v~~~~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~ 169 (249)
.+++++|..+|+.+.. +....|++++|.++++. .+|. ..+..-...|.|||.|.+.|-.
T Consensus 72 ~rlp~~~f~~aDl~~w~---------p~~~~dllfaNAvlqWl----pdH~-------~ll~rL~~~L~Pgg~LAVQmPd 131 (257)
T COG4106 72 QRLPDATFEEADLRTWK---------PEQPTDLLFANAVLQWL----PDHP-------ELLPRLVSQLAPGGVLAVQMPD 131 (257)
T ss_pred HhCCCCceecccHhhcC---------CCCccchhhhhhhhhhc----cccH-------HHHHHHHHhhCCCceEEEECCC
Confidence 3689999999998754 45689999999987653 4553 3455667899999999998753
No 63
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=99.07 E-value=3.7e-10 Score=100.57 Aligned_cols=137 Identities=21% Similarity=0.206 Sum_probs=86.0
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhhH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~~ 108 (249)
+||.+|||+||+||+.|..+.+.+... ...+.|++.|.++.+ +.++....+.|+...+..
T Consensus 154 ~p~~~VLDmCAAPG~Kt~qLLeal~~~---------~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~ 224 (375)
T KOG2198|consen 154 KPGDKVLDMCAAPGGKTAQLLEALHKD---------PTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNI 224 (375)
T ss_pred CCCCeeeeeccCCCccHHHHHHHHhcC---------CCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceecccc
Confidence 899999999999999999888876521 024799999998743 113333344455443322
Q ss_pred HH-HHHhcCCCcccEEEeCCCCCCCCCC--CcC---H-HHH------HHHHHHHHHHHHHhccCCCEEEEEEecC---CC
Q 025715 109 EV-VIRHFDGCKADLVVCDGAPDVTGLH--DMD---E-FVQ------SQLILAGLTVVTHVLKEGGKFIAKIFRG---KD 172 (249)
Q Consensus 109 ~~-i~~~~~~~~~DlVlsD~~~~~~g~~--~~~---~-~~~------~~l~~~~l~~a~~~Lk~gG~lv~k~~~~---~~ 172 (249)
.. -........||-|++|..+...|.. +.+ + +.. -.|+..++..++++||+||++|.++++. ++
T Consensus 225 ~~~~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLnpieN 304 (375)
T KOG2198|consen 225 YLKDGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLNPIEN 304 (375)
T ss_pred ccccCchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCCchhh
Confidence 10 0000122579999999876544421 111 1 111 2367788999999999999999998853 23
Q ss_pred HHHHHHHHhcCCC
Q 025715 173 TSLLYCQLKLFFP 185 (249)
Q Consensus 173 ~~~l~~~l~~~f~ 185 (249)
..-+-.+++....
T Consensus 305 EaVV~~~L~~~~~ 317 (375)
T KOG2198|consen 305 EAVVQEALQKVGG 317 (375)
T ss_pred HHHHHHHHHHhcC
Confidence 3334455655433
No 64
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.07 E-value=2.2e-09 Score=94.55 Aligned_cols=118 Identities=23% Similarity=0.260 Sum_probs=80.9
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CC-CCceEeecCCCChhhH
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNARTA 108 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~-~~v~~~~gDi~~~~~~ 108 (249)
++.+|||+|||+|.++..++++.+ ..+|+|+|+++.. .+ .+++++++|+.+.
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~-------------~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~--- 184 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFP-------------EAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAA--- 184 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCC-------------CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhc---
Confidence 457999999999999999998763 5799999999742 12 3578889998642
Q ss_pred HHHHHhcCCCcccEEEeCCCCCCCCC-CCc------CHH-------HHHHHHHHHHHHHHHhccCCCEEEEEEecCCCHH
Q 025715 109 EVVIRHFDGCKADLVVCDGAPDVTGL-HDM------DEF-------VQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTS 174 (249)
Q Consensus 109 ~~i~~~~~~~~~DlVlsD~~~~~~g~-~~~------~~~-------~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~~ 174 (249)
+.+.+||+|++|++....+. ... +.. .....+..++..+.++|+|||.+++.+-. ...
T Consensus 185 ------~~~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~--~~~ 256 (284)
T TIGR03533 185 ------LPGRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGN--SME 256 (284)
T ss_pred ------cCCCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc--CHH
Confidence 23457999999975322111 000 111 11345677899999999999999986643 224
Q ss_pred HHHHHHhc
Q 025715 175 LLYCQLKL 182 (249)
Q Consensus 175 ~l~~~l~~ 182 (249)
.+...+..
T Consensus 257 ~v~~~~~~ 264 (284)
T TIGR03533 257 ALEEAYPD 264 (284)
T ss_pred HHHHHHHh
Confidence 55555554
No 65
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.07 E-value=1.6e-09 Score=97.64 Aligned_cols=117 Identities=14% Similarity=0.080 Sum_probs=80.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC--------CC--CceEeecCCCChhhHHHH
Q 025715 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP--------IE--GVIQVQGDITNARTAEVV 111 (249)
Q Consensus 42 g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~--------~~--~v~~~~gDi~~~~~~~~i 111 (249)
..+|||+|||+|.++..++++.+ ..+|+++|+++.+. .. ..+++.+|+.+.
T Consensus 197 ~g~VLDlGCG~G~ls~~la~~~p-------------~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~------ 257 (342)
T PRK09489 197 KGKVLDVGCGAGVLSAVLARHSP-------------KIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSD------ 257 (342)
T ss_pred CCeEEEeccCcCHHHHHHHHhCC-------------CCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccc------
Confidence 35899999999999999998753 46899999997431 11 234566676542
Q ss_pred HHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCCCHHHHHHHHhcCCCeeEEe
Q 025715 112 IRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFA 190 (249)
Q Consensus 112 ~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~~~l~~~l~~~f~~v~~~ 190 (249)
. .++||+|+||+++.. |.. .+ .......+..+.+.|+|||.|++...+...+..++ .+.|..+.+.
T Consensus 258 ---~-~~~fDlIvsNPPFH~-g~~-~~----~~~~~~~i~~a~~~LkpgG~L~iVan~~l~y~~~l---~~~Fg~~~~l 323 (342)
T PRK09489 258 ---I-KGRFDMIISNPPFHD-GIQ-TS----LDAAQTLIRGAVRHLNSGGELRIVANAFLPYPDLL---DETFGSHEVL 323 (342)
T ss_pred ---c-CCCccEEEECCCccC-Ccc-cc----HHHHHHHHHHHHHhcCcCCEEEEEEeCCCChHHHH---HHHcCCeEEE
Confidence 1 368999999987643 211 11 22345678899999999999998655544555543 4467777664
No 66
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.07 E-value=4.2e-10 Score=93.58 Aligned_cols=123 Identities=11% Similarity=0.014 Sum_probs=81.9
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhhH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~~ 108 (249)
+...++||+|||+|.++..++++.+ +..|+|+|+++.. .+.+++++++|+.+..
T Consensus 15 ~~~~~ilDiGcG~G~~~~~la~~~p-------------~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~-- 79 (194)
T TIGR00091 15 NKAPLHLEIGCGKGRFLIDMAKQNP-------------DKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELL-- 79 (194)
T ss_pred CCCceEEEeCCCccHHHHHHHHhCC-------------CCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHH--
Confidence 3557999999999999999998764 5799999998731 2457889999986532
Q ss_pred HHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCCCHHHHHHHHhcC
Q 025715 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLF 183 (249)
Q Consensus 109 ~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~~~l~~~l~~~ 183 (249)
...+..+++|.|+++.+..+....... ..-+....+..+.++|||||.|.+.+-.......+...+...
T Consensus 80 ---~~~~~~~~~d~v~~~~pdpw~k~~h~~---~r~~~~~~l~~~~r~LkpgG~l~~~td~~~~~~~~~~~~~~~ 148 (194)
T TIGR00091 80 ---DKFFPDGSLSKVFLNFPDPWPKKRHNK---RRITQPHFLKEYANVLKKGGVIHFKTDNEPLFEDMLKVLSEN 148 (194)
T ss_pred ---HhhCCCCceeEEEEECCCcCCCCCccc---cccCCHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhC
Confidence 112344689999998643332111000 000124578889999999999988654333344455555543
No 67
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.06 E-value=3.1e-09 Score=95.46 Aligned_cols=119 Identities=20% Similarity=0.172 Sum_probs=83.7
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC--------CCCCceEeecCCCChhhHHHH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--------PIEGVIQVQGDITNARTAEVV 111 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~--------~~~~v~~~~gDi~~~~~~~~i 111 (249)
.++.+|||+|||+|.++..+++..+ ...|+++|+++.. ...+++++.+|+.+..
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~-------------~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp----- 173 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVD-------------AKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLP----- 173 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCC-------------CCEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCC-----
Confidence 5678999999999999998887764 3689999998732 1346788888886542
Q ss_pred HHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEec----------------CCCHHH
Q 025715 112 IRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFR----------------GKDTSL 175 (249)
Q Consensus 112 ~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~----------------~~~~~~ 175 (249)
+.+++||+|++....... .+. ..++..+.++|+|||.+++.... .....+
T Consensus 174 ---~~~~sFDvVIs~~~L~~~----~d~-------~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eE 239 (340)
T PLN02490 174 ---FPTDYADRYVSAGSIEYW----PDP-------QRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEE 239 (340)
T ss_pred ---CCCCceeEEEEcChhhhC----CCH-------HHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHH
Confidence 345789999997654321 121 24688999999999999874321 112355
Q ss_pred HHHHHhcC-CCeeEEe
Q 025715 176 LYCQLKLF-FPVVTFA 190 (249)
Q Consensus 176 l~~~l~~~-f~~v~~~ 190 (249)
+...++.. |+.|.+.
T Consensus 240 l~~lL~~aGF~~V~i~ 255 (340)
T PLN02490 240 YIEWFTKAGFKDVKLK 255 (340)
T ss_pred HHHHHHHCCCeEEEEE
Confidence 66666654 8876653
No 68
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.05 E-value=1.6e-09 Score=97.02 Aligned_cols=110 Identities=17% Similarity=0.115 Sum_probs=76.1
Q ss_pred hhhhhHHhhhhhcCcccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC------------C
Q 025715 24 RSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------------P 91 (249)
Q Consensus 24 ra~~KL~ei~~~~~~~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~------------~ 91 (249)
|+.+|...+...++.+ +|.+|||+|||+|.++..++...+ ..|+|+|.++.. .
T Consensus 106 ~s~~k~~~l~~~l~~l-~g~~VLDIGCG~G~~~~~la~~g~--------------~~V~GiD~S~~~l~q~~a~~~~~~~ 170 (322)
T PRK15068 106 RSDWKWDRVLPHLSPL-KGRTVLDVGCGNGYHMWRMLGAGA--------------KLVVGIDPSQLFLCQFEAVRKLLGN 170 (322)
T ss_pred hHHhHHHHHHHhhCCC-CCCEEEEeccCCcHHHHHHHHcCC--------------CEEEEEcCCHHHHHHHHHHHHhcCC
Confidence 3445544444444433 468999999999999998887632 479999998731 0
Q ss_pred CCCceEeecCCCChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEe
Q 025715 92 IEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (249)
Q Consensus 92 ~~~v~~~~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~ 168 (249)
-.++.++.+|+.+.+ + .++||+|+|.+..... .+. ...+..+.+.|+|||.|++..+
T Consensus 171 ~~~i~~~~~d~e~lp--------~-~~~FD~V~s~~vl~H~----~dp-------~~~L~~l~~~LkpGG~lvl~~~ 227 (322)
T PRK15068 171 DQRAHLLPLGIEQLP--------A-LKAFDTVFSMGVLYHR----RSP-------LDHLKQLKDQLVPGGELVLETL 227 (322)
T ss_pred CCCeEEEeCCHHHCC--------C-cCCcCEEEECChhhcc----CCH-------HHHHHHHHHhcCCCcEEEEEEE
Confidence 135778888876543 2 4689999997654321 121 2468889999999999998754
No 69
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.05 E-value=3e-09 Score=92.96 Aligned_cols=117 Identities=21% Similarity=0.216 Sum_probs=85.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC-----------CCCceEeecCCCChhhHHH
Q 025715 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP-----------IEGVIQVQGDITNARTAEV 110 (249)
Q Consensus 42 g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~-----------~~~v~~~~gDi~~~~~~~~ 110 (249)
+.+|||||||.|..+..+++..+ ..+++-+|++.++. .++..+...|+.+.
T Consensus 159 ~~~vlDlGCG~Gvlg~~la~~~p-------------~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~----- 220 (300)
T COG2813 159 GGKVLDLGCGYGVLGLVLAKKSP-------------QAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEP----- 220 (300)
T ss_pred CCcEEEeCCCccHHHHHHHHhCC-------------CCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEeccccc-----
Confidence 45999999999999999998864 68999999998641 23434566777663
Q ss_pred HHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCCCHHHHHHHHhcCCCeeEEe
Q 025715 111 VIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFA 190 (249)
Q Consensus 111 i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~~~l~~~l~~~f~~v~~~ 190 (249)
.. ++||+|+||+++. .|.. ....+....+..|.+.|++||.|-+-.-+......+ |++.|..+.++
T Consensus 221 ----v~-~kfd~IisNPPfh-~G~~-----v~~~~~~~~i~~A~~~L~~gGeL~iVan~~l~y~~~---L~~~Fg~v~~l 286 (300)
T COG2813 221 ----VE-GKFDLIISNPPFH-AGKA-----VVHSLAQEIIAAAARHLKPGGELWIVANRHLPYEKK---LKELFGNVEVL 286 (300)
T ss_pred ----cc-ccccEEEeCCCcc-CCcc-----hhHHHHHHHHHHHHHhhccCCEEEEEEcCCCChHHH---HHHhcCCEEEE
Confidence 23 4899999999775 3321 223345678889999999999999855544555444 56679888875
No 70
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.05 E-value=8.8e-10 Score=93.03 Aligned_cols=92 Identities=22% Similarity=0.237 Sum_probs=68.4
Q ss_pred ccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhh
Q 025715 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNART 107 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~ 107 (249)
++++.+|||+|||+|.++..+++..+ ..++|+++|+++.. .+.+++++.+|..+..
T Consensus 75 ~~~~~~VLDiG~GsG~~a~~la~~~~------------~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~- 141 (215)
T TIGR00080 75 LKPGMKVLEIGTGSGYQAAVLAEIVG------------RDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGW- 141 (215)
T ss_pred CCCcCEEEEECCCccHHHHHHHHHhC------------CCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCC-
Confidence 36889999999999999999998765 35789999999732 2457888999986531
Q ss_pred HHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEE
Q 025715 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKI 167 (249)
Q Consensus 108 ~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~ 167 (249)
....+||+|++++.... ......+.|+|||+|++-+
T Consensus 142 -------~~~~~fD~Ii~~~~~~~-----------------~~~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 142 -------EPLAPYDRIYVTAAGPK-----------------IPEALIDQLKEGGILVMPV 177 (215)
T ss_pred -------cccCCCCEEEEcCCccc-----------------ccHHHHHhcCcCcEEEEEE
Confidence 12357999999864321 1223567899999999854
No 71
>PRK04457 spermidine synthase; Provisional
Probab=99.04 E-value=8.2e-09 Score=89.85 Aligned_cols=160 Identities=15% Similarity=0.206 Sum_probs=101.4
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------C-CCCceEeecCCCChhh
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------P-IEGVIQVQGDITNART 107 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~-~~~v~~~~gDi~~~~~ 107 (249)
.++.+|||||||.|.++..+++..+ ..+|++||+++.. . .++++++.+|..+.
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p-------------~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~-- 129 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLP-------------DTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEY-- 129 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCC-------------CCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHH--
Confidence 3567999999999999999988764 5799999998731 1 25678888887542
Q ss_pred HHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEec-CCCHHHHHHHHhcCCCe
Q 025715 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFR-GKDTSLLYCQLKLFFPV 186 (249)
Q Consensus 108 ~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~-~~~~~~l~~~l~~~f~~ 186 (249)
+ ... ..+||+|++|.. +..+. .... .....+..+.+.|+|||.+++-++. .+....++..++..|..
T Consensus 130 ---l-~~~-~~~yD~I~~D~~-~~~~~---~~~l---~t~efl~~~~~~L~pgGvlvin~~~~~~~~~~~l~~l~~~F~~ 197 (262)
T PRK04457 130 ---I-AVH-RHSTDVILVDGF-DGEGI---IDAL---CTQPFFDDCRNALSSDGIFVVNLWSRDKRYDRYLERLESSFEG 197 (262)
T ss_pred ---H-HhC-CCCCCEEEEeCC-CCCCC---cccc---CcHHHHHHHHHhcCCCcEEEEEcCCCchhHHHHHHHHHHhcCC
Confidence 1 122 358999999962 11111 1000 0135788899999999999987664 33456677788888975
Q ss_pred -eEEecCCCCCCCCceEEEEEeeccC-CCCCCchhhhHhHHhhCCCCC
Q 025715 187 -VTFAKPKSSRNSSIEAFAVCENYFP-PEGFNPKDLHRLLEKVGSPWG 232 (249)
Q Consensus 187 -v~~~kP~~sr~~s~E~y~v~~g~~~-~~~~~~~~~~~~~~~~~~~~~ 232 (249)
+.++ |.. ...| ..++ +++. +....-..|......++..|+
T Consensus 198 ~~~~~-~~~-~~~N--~v~~--a~~~~~~~~~~~~l~~~a~~l~~~~~ 239 (262)
T PRK04457 198 RVLEL-PAE-SHGN--VAVF--AFKSAPKELRWDKLRKRAKKLENEHG 239 (262)
T ss_pred cEEEE-ecC-CCcc--EEEE--EECCCCCCcCHHHHHHHHHHHHHHhC
Confidence 3443 322 2223 3333 3342 333443456555555666665
No 72
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.04 E-value=2.8e-09 Score=97.86 Aligned_cols=121 Identities=17% Similarity=0.111 Sum_probs=77.8
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CC--CCceEeecCCCChh
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI--EGVIQVQGDITNAR 106 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~--~~v~~~~gDi~~~~ 106 (249)
.+|.+|||||||+|+|+.+++.. + ..+|++||+++.. .+ .+++++++|+.+.-
T Consensus 219 ~~g~rVLDlfsgtG~~~l~aa~~-g-------------a~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l 284 (396)
T PRK15128 219 VENKRVLNCFSYTGGFAVSALMG-G-------------CSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLL 284 (396)
T ss_pred cCCCeEEEeccCCCHHHHHHHhC-C-------------CCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHH
Confidence 36789999999999998776532 2 3599999999842 13 25788999986531
Q ss_pred hHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCC-CHHHHHHHH
Q 025715 107 TAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGK-DTSLLYCQL 180 (249)
Q Consensus 107 ~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~-~~~~l~~~l 180 (249)
..+. ..+++||+|++|++.-.... ..-....+-+...+..+.++|+|||.|++..+.+. ....+..++
T Consensus 285 --~~~~--~~~~~fDlVilDPP~f~~~k--~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~~~~~f~~~v 353 (396)
T PRK15128 285 --RTYR--DRGEKFDVIVMDPPKFVENK--SQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGLMTSDLFQKII 353 (396)
T ss_pred --HHHH--hcCCCCCEEEECCCCCCCCh--HHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCHHHHHHHH
Confidence 1111 12458999999985422111 01111222345677889999999999997665432 334444444
No 73
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.04 E-value=9e-10 Score=100.80 Aligned_cols=153 Identities=16% Similarity=0.135 Sum_probs=93.1
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC------CC--CceEeecCCCChhhHHHH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP------IE--GVIQVQGDITNARTAEVV 111 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~------~~--~v~~~~gDi~~~~~~~~i 111 (249)
++|.+|||+|||+|+++..+++..+ ++|+|+|+++... .. ++++..+|..+
T Consensus 166 ~~g~rVLDIGcG~G~~a~~la~~~g--------------~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~------- 224 (383)
T PRK11705 166 KPGMRVLDIGCGWGGLARYAAEHYG--------------VSVVGVTISAEQQKLAQERCAGLPVEIRLQDYRD------- 224 (383)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHCC--------------CEEEEEeCCHHHHHHHHHHhccCeEEEEECchhh-------
Confidence 6889999999999999999987654 6999999998431 12 35556666543
Q ss_pred HHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCCCHHHHHHHHhcCCCeeEEec
Q 025715 112 IRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAK 191 (249)
Q Consensus 112 ~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~~~l~~~l~~~f~~v~~~k 191 (249)
+ .++||+|+|.+.+...|..+ ....+..+.++|||||.+++..+........ ...|-.-. +-
T Consensus 225 ---l-~~~fD~Ivs~~~~ehvg~~~---------~~~~l~~i~r~LkpGG~lvl~~i~~~~~~~~----~~~~i~~y-if 286 (383)
T PRK11705 225 ---L-NGQFDRIVSVGMFEHVGPKN---------YRTYFEVVRRCLKPDGLFLLHTIGSNKTDTN----VDPWINKY-IF 286 (383)
T ss_pred ---c-CCCCCEEEEeCchhhCChHH---------HHHHHHHHHHHcCCCcEEEEEEccCCCCCCC----CCCCceee-ec
Confidence 2 36899999987654433221 1246788999999999999876532221000 00111111 12
Q ss_pred CCCCCCCCc------e-EEEEEeeccCCCCCCchhhhHhHHhhCCCCC
Q 025715 192 PKSSRNSSI------E-AFAVCENYFPPEGFNPKDLHRLLEKVGSPWG 232 (249)
Q Consensus 192 P~~sr~~s~------E-~y~v~~g~~~~~~~~~~~~~~~~~~~~~~~~ 232 (249)
|....+.-. | .+.+..-..-..+|.+ .|..|.+++++.|+
T Consensus 287 p~g~lps~~~i~~~~~~~~~v~d~~~~~~hy~~-TL~~W~~~f~~~~~ 333 (383)
T PRK11705 287 PNGCLPSVRQIAQASEGLFVMEDWHNFGADYDR-TLMAWHENFEAAWP 333 (383)
T ss_pred CCCcCCCHHHHHHHHHCCcEEEEEecChhhHHH-HHHHHHHHHHHHHH
Confidence 332222111 1 1223222334566755 48899999888765
No 74
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.04 E-value=1.4e-09 Score=95.91 Aligned_cols=112 Identities=20% Similarity=0.180 Sum_probs=77.6
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC-----------C-CCceEeecCCCChhh
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP-----------I-EGVIQVQGDITNART 107 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~-----------~-~~v~~~~gDi~~~~~ 107 (249)
.++.+|||+|||+|..+..+++. + ..+|+|+|+++.+. + ..+.+..+|...
T Consensus 158 ~~g~~VLDvGcGsG~lai~aa~~-g-------------~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~--- 220 (288)
T TIGR00406 158 LKDKNVIDVGCGSGILSIAALKL-G-------------AAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQ--- 220 (288)
T ss_pred CCCCEEEEeCCChhHHHHHHHHc-C-------------CCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEeccccc---
Confidence 47899999999999999887753 3 36899999998531 1 123334444221
Q ss_pred HHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCCCHHHHHHHHhcCCCee
Q 025715 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVV 187 (249)
Q Consensus 108 ~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~~~l~~~l~~~f~~v 187 (249)
...++||+|++|... + .+...+..+.++|||||.|++.-+......++...++..|+.+
T Consensus 221 -------~~~~~fDlVvan~~~--------~------~l~~ll~~~~~~LkpgG~li~sgi~~~~~~~v~~~~~~~f~~~ 279 (288)
T TIGR00406 221 -------PIEGKADVIVANILA--------E------VIKELYPQFSRLVKPGGWLILSGILETQAQSVCDAYEQGFTVV 279 (288)
T ss_pred -------ccCCCceEEEEecCH--------H------HHHHHHHHHHHHcCCCcEEEEEeCcHhHHHHHHHHHHccCcee
Confidence 124689999998531 1 1234677889999999999997776666677777777666655
Q ss_pred EE
Q 025715 188 TF 189 (249)
Q Consensus 188 ~~ 189 (249)
..
T Consensus 280 ~~ 281 (288)
T TIGR00406 280 EI 281 (288)
T ss_pred eE
Confidence 44
No 75
>PRK14968 putative methyltransferase; Provisional
Probab=99.02 E-value=1.2e-08 Score=83.39 Aligned_cols=124 Identities=21% Similarity=0.234 Sum_probs=82.2
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCC--ceEeecCCCChh
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEG--VIQVQGDITNAR 106 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~--v~~~~gDi~~~~ 106 (249)
.++.+|||+|||+|.++..++.+ + ..|+++|+++.. ...+ +.++.+|+.+.
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~-~--------------~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~- 85 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKN-G--------------KKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEP- 85 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhh-c--------------ceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccc-
Confidence 57789999999999999999876 3 689999999732 1122 67788887652
Q ss_pred hHHHHHHhcCCCcccEEEeCCCCCCCCC-CC-cCHH--------HHHHHHHHHHHHHHHhccCCCEEEEEEecCCCHHHH
Q 025715 107 TAEVVIRHFDGCKADLVVCDGAPDVTGL-HD-MDEF--------VQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLL 176 (249)
Q Consensus 107 ~~~~i~~~~~~~~~DlVlsD~~~~~~g~-~~-~~~~--------~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~~~l 176 (249)
+...+||+|++|.+....+. .. .+.. .....+...++.+.++|+|||.+++.+........+
T Consensus 86 --------~~~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~~~~~l 157 (188)
T PRK14968 86 --------FRGDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLTGEDEV 157 (188)
T ss_pred --------ccccCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccCCHHHH
Confidence 23348999999875432110 00 0000 012234567889999999999998866554455666
Q ss_pred HHHHhcC-CCee
Q 025715 177 YCQLKLF-FPVV 187 (249)
Q Consensus 177 ~~~l~~~-f~~v 187 (249)
...+... |+.+
T Consensus 158 ~~~~~~~g~~~~ 169 (188)
T PRK14968 158 LEYLEKLGFEAE 169 (188)
T ss_pred HHHHHHCCCeee
Confidence 6666654 4433
No 76
>PRK08317 hypothetical protein; Provisional
Probab=99.01 E-value=2.3e-09 Score=90.59 Aligned_cols=97 Identities=25% Similarity=0.277 Sum_probs=73.1
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC----------CCCCceEeecCCCChhhHH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------PIEGVIQVQGDITNARTAE 109 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~----------~~~~v~~~~gDi~~~~~~~ 109 (249)
.++.+|||+|||+|.++..++...+ +.++++++|+++.. ...++++..+|+.+.+
T Consensus 18 ~~~~~vLdiG~G~G~~~~~~a~~~~------------~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~--- 82 (241)
T PRK08317 18 QPGDRVLDVGCGPGNDARELARRVG------------PEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLP--- 82 (241)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhcC------------CCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCC---
Confidence 5788999999999999999998874 35799999999742 1245778888887643
Q ss_pred HHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEE
Q 025715 110 VVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKI 167 (249)
Q Consensus 110 ~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~ 167 (249)
+..++||+|+++...... .+. ...+..+.++|+|||.+++..
T Consensus 83 -----~~~~~~D~v~~~~~~~~~----~~~-------~~~l~~~~~~L~~gG~l~~~~ 124 (241)
T PRK08317 83 -----FPDGSFDAVRSDRVLQHL----EDP-------ARALAEIARVLRPGGRVVVLD 124 (241)
T ss_pred -----CCCCCceEEEEechhhcc----CCH-------HHHHHHHHHHhcCCcEEEEEe
Confidence 345789999998654322 121 246788899999999999754
No 77
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.01 E-value=2.3e-09 Score=93.63 Aligned_cols=102 Identities=18% Similarity=0.164 Sum_probs=72.7
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC------CCCCceEeecCCCChhhHHHHHH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PIEGVIQVQGDITNARTAEVVIR 113 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~------~~~~v~~~~gDi~~~~~~~~i~~ 113 (249)
.+..+|||+|||+|.++..+++..+.. ....|+|+|+++.. ..+++.+..+|+.+.+
T Consensus 84 ~~~~~vLDiGcG~G~~~~~l~~~~~~~----------~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp------- 146 (272)
T PRK11088 84 EKATALLDIGCGEGYYTHALADALPEI----------TTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLP------- 146 (272)
T ss_pred CCCCeEEEECCcCCHHHHHHHHhcccc----------cCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCC-------
Confidence 345789999999999999998876411 12479999999843 2467888899987753
Q ss_pred hcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCCCHHHHH
Q 025715 114 HFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLY 177 (249)
Q Consensus 114 ~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~~~l~ 177 (249)
+.+++||+|++...+. .+....++|||||.|++.+.......++.
T Consensus 147 -~~~~sfD~I~~~~~~~------------------~~~e~~rvLkpgG~li~~~p~~~~l~el~ 191 (272)
T PRK11088 147 -FADQSLDAIIRIYAPC------------------KAEELARVVKPGGIVITVTPGPRHLFELK 191 (272)
T ss_pred -CcCCceeEEEEecCCC------------------CHHHHHhhccCCCEEEEEeCCCcchHHHH
Confidence 3567999999865321 13456789999999998655444444443
No 78
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.01 E-value=1.8e-09 Score=91.11 Aligned_cols=90 Identities=19% Similarity=0.227 Sum_probs=67.5
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhhH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~~ 108 (249)
+++.+|||+|||+|..+..+++..+ ..++|+++|+++.. .+.+++++.+|.....
T Consensus 75 ~~g~~VLdIG~GsG~~t~~la~~~~------------~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~-- 140 (212)
T PRK13942 75 KEGMKVLEIGTGSGYHAAVVAEIVG------------KSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGY-- 140 (212)
T ss_pred CCcCEEEEECCcccHHHHHHHHhcC------------CCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCC--
Confidence 6889999999999999999998775 45799999999732 2357889999986532
Q ss_pred HHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEE
Q 025715 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (249)
Q Consensus 109 ~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k 166 (249)
.....||+|+++++.. .. .....+.|||||.|++-
T Consensus 141 ------~~~~~fD~I~~~~~~~-----~~------------~~~l~~~LkpgG~lvi~ 175 (212)
T PRK13942 141 ------EENAPYDRIYVTAAGP-----DI------------PKPLIEQLKDGGIMVIP 175 (212)
T ss_pred ------CcCCCcCEEEECCCcc-----cc------------hHHHHHhhCCCcEEEEE
Confidence 1346899999976421 11 12345689999999984
No 79
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.00 E-value=2e-09 Score=101.14 Aligned_cols=97 Identities=19% Similarity=0.159 Sum_probs=73.8
Q ss_pred ccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC---------C-CCCceEeecCCCChhhH
Q 025715 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------P-IEGVIQVQGDITNARTA 108 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~---------~-~~~v~~~~gDi~~~~~~ 108 (249)
++++.+|||+|||+|.++..+++..+ .+|+|+|+++.. . ..++++.++|+.+.+
T Consensus 264 ~~~~~~vLDiGcG~G~~~~~la~~~~--------------~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~-- 327 (475)
T PLN02336 264 LKPGQKVLDVGCGIGGGDFYMAENFD--------------VHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKT-- 327 (475)
T ss_pred CCCCCEEEEEeccCCHHHHHHHHhcC--------------CEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCC--
Confidence 36788999999999999998887653 699999999632 1 135788899987643
Q ss_pred HHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEe
Q 025715 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (249)
Q Consensus 109 ~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~ 168 (249)
+++++||+|+|.....+. .+. ..++..+.++|||||.+++..+
T Consensus 328 ------~~~~~fD~I~s~~~l~h~----~d~-------~~~l~~~~r~LkpgG~l~i~~~ 370 (475)
T PLN02336 328 ------YPDNSFDVIYSRDTILHI----QDK-------PALFRSFFKWLKPGGKVLISDY 370 (475)
T ss_pred ------CCCCCEEEEEECCccccc----CCH-------HHHHHHHHHHcCCCeEEEEEEe
Confidence 345689999997654332 122 2568889999999999998765
No 80
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=99.00 E-value=1.6e-09 Score=92.27 Aligned_cols=109 Identities=19% Similarity=0.138 Sum_probs=73.9
Q ss_pred ccchhhhhhHHhhhhhcCcccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCC-CC-----CCC
Q 025715 20 GWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQP-MA-----PIE 93 (249)
Q Consensus 20 ~~~~ra~~KL~ei~~~~~~~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~-~~-----~~~ 93 (249)
.|++|+++||.++.+.+++..++.+|||+|||||+|+..+++. + ..+|+|||+++ +. ..+
T Consensus 54 ~~vsr~~~kL~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~-g-------------a~~v~avD~~~~~l~~~l~~~~ 119 (228)
T TIGR00478 54 LFVSRGGEKLKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQK-G-------------AKEVYGVDVGYNQLAEKLRQDE 119 (228)
T ss_pred chhhhhHHHHHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHc-C-------------CCEEEEEeCCHHHHHHHHhcCC
Confidence 3999999999999999987667889999999999999999986 3 36899999998 21 123
Q ss_pred Cce-EeecCCCChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEE
Q 025715 94 GVI-QVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIA 165 (249)
Q Consensus 94 ~v~-~~~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~ 165 (249)
++. +...|+..... +.+ ..|++.+|.++-. . ...+.....+|++ |.++.
T Consensus 120 ~v~~~~~~ni~~~~~-----~~~---~~d~~~~DvsfiS-----------~---~~~l~~i~~~l~~-~~~~~ 169 (228)
T TIGR00478 120 RVKVLERTNIRYVTP-----ADI---FPDFATFDVSFIS-----------L---ISILPELDLLLNP-NDLTL 169 (228)
T ss_pred CeeEeecCCcccCCH-----hHc---CCCceeeeEEEee-----------h---HhHHHHHHHHhCc-CeEEE
Confidence 332 23345553221 111 1355666643311 0 0135566778888 77776
No 81
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=98.99 E-value=3.8e-09 Score=94.04 Aligned_cols=110 Identities=16% Similarity=0.098 Sum_probs=73.8
Q ss_pred hhhhhHHhhhhhcCcccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC------------C
Q 025715 24 RSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------------P 91 (249)
Q Consensus 24 ra~~KL~ei~~~~~~~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~------------~ 91 (249)
|+.+|...+....+. .+|.+|||+|||+|.++..++... ...|+|+|.++.. .
T Consensus 105 ~s~~~~~~~l~~l~~-~~g~~VLDvGCG~G~~~~~~~~~g--------------~~~v~GiDpS~~ml~q~~~~~~~~~~ 169 (314)
T TIGR00452 105 RSDIKWDRVLPHLSP-LKGRTILDVGCGSGYHMWRMLGHG--------------AKSLVGIDPTVLFLCQFEAVRKLLDN 169 (314)
T ss_pred HHHHHHHHHHHhcCC-CCCCEEEEeccCCcHHHHHHHHcC--------------CCEEEEEcCCHHHHHHHHHHHHHhcc
Confidence 345554445554443 356899999999999988877542 2479999998831 0
Q ss_pred CCCceEeecCCCChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEe
Q 025715 92 IEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (249)
Q Consensus 92 ~~~v~~~~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~ 168 (249)
..++.+..+|+.+.+ ...+||+|+|.+..... .+. ...+..+.++|||||.|++.++
T Consensus 170 ~~~v~~~~~~ie~lp---------~~~~FD~V~s~gvL~H~----~dp-------~~~L~el~r~LkpGG~Lvletl 226 (314)
T TIGR00452 170 DKRAILEPLGIEQLH---------ELYAFDTVFSMGVLYHR----KSP-------LEHLKQLKHQLVIKGELVLETL 226 (314)
T ss_pred CCCeEEEECCHHHCC---------CCCCcCEEEEcchhhcc----CCH-------HHHHHHHHHhcCCCCEEEEEEE
Confidence 124556666664432 12479999998754332 121 2468889999999999998754
No 82
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=98.99 E-value=1.4e-09 Score=90.75 Aligned_cols=93 Identities=18% Similarity=0.193 Sum_probs=66.8
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhhHH
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTAE 109 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~~~ 109 (249)
++.+|||+|||+|.++.+++++ + ..|+|+|+++.. .+.++++..+|+.+.+
T Consensus 30 ~~~~vLDiGcG~G~~a~~La~~-g--------------~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~--- 91 (197)
T PRK11207 30 KPGKTLDLGCGNGRNSLYLAAN-G--------------FDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLT--- 91 (197)
T ss_pred CCCcEEEECCCCCHHHHHHHHC-C--------------CEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCC---
Confidence 4579999999999999999875 2 589999999742 1345677778876532
Q ss_pred HHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEE
Q 025715 110 VVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (249)
Q Consensus 110 ~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k 166 (249)
+ +++||+|++....... +. ......+..+.++|+|||.+++.
T Consensus 92 -----~-~~~fD~I~~~~~~~~~-----~~----~~~~~~l~~i~~~LkpgG~~~~~ 133 (197)
T PRK11207 92 -----F-DGEYDFILSTVVLMFL-----EA----KTIPGLIANMQRCTKPGGYNLIV 133 (197)
T ss_pred -----c-CCCcCEEEEecchhhC-----CH----HHHHHHHHHHHHHcCCCcEEEEE
Confidence 2 3579999998654221 11 11235788889999999996653
No 83
>PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein. This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A.
Probab=98.98 E-value=3.7e-09 Score=89.81 Aligned_cols=156 Identities=24% Similarity=0.218 Sum_probs=91.2
Q ss_pred CCCeEEEEcCC------CChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCCCCCceEeecCCCChhhHHHHHHh
Q 025715 41 GVKRVVDLCAA------PGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRH 114 (249)
Q Consensus 41 ~g~~vLDLG~g------pG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~~~~v~~~~gDi~~~~~~~~i~~~ 114 (249)
..+||++||+| ||. ..+.+.++ .++.++..|+.+...-.+. .+.+|.....
T Consensus 61 ~nMrVlHlGAgSdkGvaPGt--~VLrqwlP------------~~ailvDnDi~d~vSDa~~-~~~~Dc~t~~-------- 117 (299)
T PF06460_consen 61 HNMRVLHLGAGSDKGVAPGT--AVLRQWLP------------EDAILVDNDIRDYVSDADQ-SIVGDCRTYM-------- 117 (299)
T ss_dssp TT-EEEEES---TTSB-HHH--HHHHHHS-------------TT-EEEEEESS--B-SSSE-EEES-GGGEE--------
T ss_pred cCcEEEEecccccCCcCCch--HHHHHhCC------------CCcEEEecchhhhccccCC-ceeccccccC--------
Confidence 46899999974 554 67888887 5789999999986544443 4668876643
Q ss_pred cCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCCCHHHHHHHHhcCCCeeEEecCCC
Q 025715 115 FDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKS 194 (249)
Q Consensus 115 ~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~~~l~~~l~~~f~~v~~~kP~~ 194 (249)
.+.++|+|+||+--...-.-+.+......+..-++.....-|+-||++.+|+-......++.+++ ++|..++++. .+
T Consensus 118 -~~~k~DlIiSDmYd~~~k~~~~~n~~~~~fF~yl~~~i~~kLaLGGSvaiKiTE~Sw~~~Lyel~-~~F~~wt~Fc-T~ 194 (299)
T PF06460_consen 118 -PPDKFDLIISDMYDGRTKNCDGENNSKEGFFTYLCGFIKEKLALGGSVAIKITEHSWNAQLYELM-GYFSWWTCFC-TA 194 (299)
T ss_dssp -ESS-EEEEEE----TTS-SS-S------THHHHHHHHHHHHEEEEEEEEEEE-SSS--HHHHHHH-TTEEEEEEEE-EG
T ss_pred -CCCcccEEEEecccccccccccccCCccccHHHHHHHHHhhhhcCceEEEEeecccccHHHHHHH-hhcccEEEEe-cc
Confidence 35789999999841111000000000112334466777889999999999998877777777755 5799999874 35
Q ss_pred CCCCCceEEEEEeeccCC----CCCCchhhhH
Q 025715 195 SRNSSIEAFAVCENYFPP----EGFNPKDLHR 222 (249)
Q Consensus 195 sr~~s~E~y~v~~g~~~~----~~~~~~~~~~ 222 (249)
-..+|||.+++|.+|.+. ..+|.+.|++
T Consensus 195 VNtSSSEaFLigiNYLg~~~~~~~IdG~~mHA 226 (299)
T PF06460_consen 195 VNTSSSEAFLIGINYLGKFSEGEIIDGNVMHA 226 (299)
T ss_dssp GGTTSS-EEEEEEEE-SS---SS---HHHHHH
T ss_pred cCccccceeEEeeeccCccccccccchHHHHH
Confidence 567789999999999987 4455554443
No 84
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.97 E-value=2.9e-09 Score=94.67 Aligned_cols=115 Identities=20% Similarity=0.250 Sum_probs=78.1
Q ss_pred CeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CC-CCceEeecCCCChhhHHH
Q 025715 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNARTAEV 110 (249)
Q Consensus 43 ~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~-~~v~~~~gDi~~~~~~~~ 110 (249)
.+|||+|||+|.++..++...+ ..+|+++|+++.+ .+ .+++++++|+.+.
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p-------------~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~----- 196 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFP-------------DAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAA----- 196 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCC-------------CCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhh-----
Confidence 6899999999999999988753 5799999999842 12 2478889997542
Q ss_pred HHHhcCCCcccEEEeCCCCCCCCC-CCc------CHH-------HHHHHHHHHHHHHHHhccCCCEEEEEEecCCCHHHH
Q 025715 111 VIRHFDGCKADLVVCDGAPDVTGL-HDM------DEF-------VQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLL 176 (249)
Q Consensus 111 i~~~~~~~~~DlVlsD~~~~~~g~-~~~------~~~-------~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~~~l 176 (249)
++..+||+|++|++....+. ... +.. .....+..++..+.++|+|||.+++.+... ...+
T Consensus 197 ----l~~~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~~--~~~~ 270 (307)
T PRK11805 197 ----LPGRRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGNS--RVHL 270 (307)
T ss_pred ----CCCCCccEEEECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECcC--HHHH
Confidence 23457999999974321110 000 000 123556788999999999999999865432 3344
Q ss_pred HHHHh
Q 025715 177 YCQLK 181 (249)
Q Consensus 177 ~~~l~ 181 (249)
...+.
T Consensus 271 ~~~~~ 275 (307)
T PRK11805 271 EEAYP 275 (307)
T ss_pred HHHHh
Confidence 44443
No 85
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=98.95 E-value=2e-08 Score=82.05 Aligned_cols=107 Identities=20% Similarity=0.213 Sum_probs=83.1
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhhH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~~ 108 (249)
++|++++|+|||+|+.+..++ +.+ +.++|+|+|.++.+ ..+|+..+.||.-+.
T Consensus 33 ~~g~~l~DIGaGtGsi~iE~a-~~~------------p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~--- 96 (187)
T COG2242 33 RPGDRLWDIGAGTGSITIEWA-LAG------------PSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEA--- 96 (187)
T ss_pred CCCCEEEEeCCCccHHHHHHH-HhC------------CCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHh---
Confidence 789999999999999999999 665 57999999998743 257888889987542
Q ss_pred HHHHHhcCC-CcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCCCHHHHHHHHhcC
Q 025715 109 EVVIRHFDG-CKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLF 183 (249)
Q Consensus 109 ~~i~~~~~~-~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~~~l~~~l~~~ 183 (249)
+++ .++|.|+-.|+ .+. ..+++.+...|||||++|+...+.+....++..+++.
T Consensus 97 ------L~~~~~~daiFIGGg------~~i---------~~ile~~~~~l~~ggrlV~naitlE~~~~a~~~~~~~ 151 (187)
T COG2242 97 ------LPDLPSPDAIFIGGG------GNI---------EEILEAAWERLKPGGRLVANAITLETLAKALEALEQL 151 (187)
T ss_pred ------hcCCCCCCEEEECCC------CCH---------HHHHHHHHHHcCcCCeEEEEeecHHHHHHHHHHHHHc
Confidence 222 27999998764 112 3578889999999999999877777777777666653
No 86
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.94 E-value=2.3e-08 Score=87.78 Aligned_cols=129 Identities=22% Similarity=0.223 Sum_probs=85.1
Q ss_pred eEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhhHHHHH
Q 025715 44 RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTAEVVI 112 (249)
Q Consensus 44 ~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~~~~i~ 112 (249)
+|||||||+|..+..+++..+ ...|+|+|+++.+ .+.++.++++|+...
T Consensus 113 ~ilDlGTGSG~iai~la~~~~-------------~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~------- 172 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGP-------------DAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEP------- 172 (280)
T ss_pred cEEEecCChHHHHHHHHhhCc-------------CCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccc-------
Confidence 799999999999999998864 5799999999943 123345566676553
Q ss_pred HhcCCCcccEEEeCCCCCCCCCC-------CcCHH-------HHHHHHHHHHHHHHHhccCCCEEEEEEecCCCHHHHHH
Q 025715 113 RHFDGCKADLVVCDGAPDVTGLH-------DMDEF-------VQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYC 178 (249)
Q Consensus 113 ~~~~~~~~DlVlsD~~~~~~g~~-------~~~~~-------~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~~~l~~ 178 (249)
+. ++||+|+||++--..... ..++. .-++.+...+..+...|+|||.+++.+-. .....+..
T Consensus 173 --~~-~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~-~q~~~v~~ 248 (280)
T COG2890 173 --LR-GKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGL-TQGEAVKA 248 (280)
T ss_pred --cC-CceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECC-CcHHHHHH
Confidence 33 489999999852111100 01111 12456788899999999999999986532 22333444
Q ss_pred HHhc-C-CCeeEEecCCCCC
Q 025715 179 QLKL-F-FPVVTFAKPKSSR 196 (249)
Q Consensus 179 ~l~~-~-f~~v~~~kP~~sr 196 (249)
++.. . |..+...+....+
T Consensus 249 ~~~~~~~~~~v~~~~d~~g~ 268 (280)
T COG2890 249 LFEDTGFFEIVETLKDLFGR 268 (280)
T ss_pred HHHhcCCceEEEEEecCCCc
Confidence 4433 2 5667777665544
No 87
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=98.93 E-value=8.7e-09 Score=93.93 Aligned_cols=121 Identities=19% Similarity=0.197 Sum_probs=83.2
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CC--CCceEeecCCCChhh
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI--EGVIQVQGDITNART 107 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~--~~v~~~~gDi~~~~~ 107 (249)
.|.+||||+|-||+||.+++.. | ..+|++||++.-. .+ ..+.++++|+.+.
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~g-G-------------A~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~-- 280 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALG-G-------------ASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKW-- 280 (393)
T ss_pred cCCeEEEecccCcHHHHHHHhc-C-------------CCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHH--
Confidence 3899999999999999999853 2 3599999999742 12 2467899998763
Q ss_pred HHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEec-CCCHHHHHHHHh
Q 025715 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFR-GKDTSLLYCQLK 181 (249)
Q Consensus 108 ~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~-~~~~~~l~~~l~ 181 (249)
++...+ .+.+||+|+.|++--..+- .+.+...+-+...+..+.++|+|||++++.+.. ......+..++.
T Consensus 281 l~~~~~--~g~~fDlIilDPPsF~r~k--~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~~~~~f~~~i~ 351 (393)
T COG1092 281 LRKAER--RGEKFDLIILDPPSFARSK--KQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRHFSSDLFLEIIA 351 (393)
T ss_pred HHHHHh--cCCcccEEEECCcccccCc--ccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCccCHHHHHHHHH
Confidence 122211 2458999999984222211 223455566678899999999999999987764 334444444443
No 88
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.93 E-value=6.9e-09 Score=87.04 Aligned_cols=91 Identities=12% Similarity=0.135 Sum_probs=67.0
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCC-CceEeecCCCChhh
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIE-GVIQVQGDITNART 107 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~-~v~~~~gDi~~~~~ 107 (249)
+++.+|||+|||+|..+..+++.++ ..++|+++|+++.. .+. +++++.+|..+..
T Consensus 71 ~~~~~VLDiG~GsG~~~~~la~~~~------------~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~- 137 (205)
T PRK13944 71 RPGMKILEVGTGSGYQAAVCAEAIE------------RRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGL- 137 (205)
T ss_pred CCCCEEEEECcCccHHHHHHHHhcC------------CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCC-
Confidence 5789999999999999999998775 35799999999732 122 4788889986531
Q ss_pred HHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEE
Q 025715 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKI 167 (249)
Q Consensus 108 ~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~ 167 (249)
....+||+|+++.+... ......+.|+|||.|++-+
T Consensus 138 -------~~~~~fD~Ii~~~~~~~-----------------~~~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 138 -------EKHAPFDAIIVTAAAST-----------------IPSALVRQLKDGGVLVIPV 173 (205)
T ss_pred -------ccCCCccEEEEccCcch-----------------hhHHHHHhcCcCcEEEEEE
Confidence 12358999999864311 1124568899999998854
No 89
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.93 E-value=6.7e-09 Score=88.51 Aligned_cols=124 Identities=18% Similarity=0.187 Sum_probs=88.6
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CC-CCceEeecCCCChhh
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNART 107 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~-~~v~~~~gDi~~~~~ 107 (249)
.||.+|+|.|.|+|.++.+++..++ +.|+|+.+|+.+.. .+ ++++...+|+.+..
T Consensus 93 ~pg~rVlEAGtGSG~lt~~La~~vg------------~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~- 159 (256)
T COG2519 93 SPGSRVLEAGTGSGALTAYLARAVG------------PEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGI- 159 (256)
T ss_pred CCCCEEEEcccCchHHHHHHHHhhC------------CCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccc-
Confidence 7899999999999999999998887 67999999998731 12 33777789998753
Q ss_pred HHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCCCHHHHHHHHhcC-CCe
Q 025715 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLF-FPV 186 (249)
Q Consensus 108 ~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~~~l~~~l~~~-f~~ 186 (249)
.+..||.|+.|+. +++ .++.-+.+.|+|||.+++-+-.-+........|+.. |-.
T Consensus 160 --------~~~~vDav~LDmp---------~PW-------~~le~~~~~Lkpgg~~~~y~P~veQv~kt~~~l~~~g~~~ 215 (256)
T COG2519 160 --------DEEDVDAVFLDLP---------DPW-------NVLEHVSDALKPGGVVVVYSPTVEQVEKTVEALRERGFVD 215 (256)
T ss_pred --------cccccCEEEEcCC---------ChH-------HHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhcCccc
Confidence 2358999999984 222 367888999999999987443333344444445543 433
Q ss_pred eEE---------ecCCCCCCCCc
Q 025715 187 VTF---------AKPKSSRNSSI 200 (249)
Q Consensus 187 v~~---------~kP~~sr~~s~ 200 (249)
++. +++.+.||.+.
T Consensus 216 ie~~E~l~R~~~v~~~~~RP~~~ 238 (256)
T COG2519 216 IEAVETLVRRWEVRKEATRPETR 238 (256)
T ss_pred hhhheeeeheeeecccccCcccc
Confidence 221 45677777753
No 90
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=98.93 E-value=3.7e-09 Score=88.02 Aligned_cols=94 Identities=17% Similarity=0.068 Sum_probs=63.9
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC--------CCC--ceEeecCCCChhhHHH
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP--------IEG--VIQVQGDITNARTAEV 110 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~--------~~~--v~~~~gDi~~~~~~~~ 110 (249)
++.+|||+|||+|.++.+++++ + ..|+|+|+++... ..+ +....+|+...+
T Consensus 30 ~~~~vLDiGcG~G~~a~~la~~-g--------------~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~---- 90 (195)
T TIGR00477 30 APCKTLDLGCGQGRNSLYLSLA-G--------------YDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAA---- 90 (195)
T ss_pred CCCcEEEeCCCCCHHHHHHHHC-C--------------CeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhcc----
Confidence 3469999999999999999874 3 6999999998421 112 445556654321
Q ss_pred HHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEE
Q 025715 111 VIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKI 167 (249)
Q Consensus 111 i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~ 167 (249)
+. .+||+|++...+... +. ......+..+.++|+|||.+++-.
T Consensus 91 ----~~-~~fD~I~~~~~~~~~-----~~----~~~~~~l~~~~~~LkpgG~lli~~ 133 (195)
T TIGR00477 91 ----LN-EDYDFIFSTVVFMFL-----QA----GRVPEIIANMQAHTRPGGYNLIVA 133 (195)
T ss_pred ----cc-CCCCEEEEecccccC-----CH----HHHHHHHHHHHHHhCCCcEEEEEE
Confidence 23 579999997654321 11 112356788899999999966543
No 91
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=98.92 E-value=8.2e-09 Score=93.92 Aligned_cols=104 Identities=11% Similarity=0.097 Sum_probs=77.7
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhhHH
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTAE 109 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~~~ 109 (249)
.+..+||+|||+|.++..++.+.+ +..++|+|+++.. .+.++.++++|+...
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P-------------~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~l---- 184 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNP-------------NKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLL---- 184 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCC-------------CCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHh----
Confidence 467999999999999999998864 5799999998621 356888999997542
Q ss_pred HHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHH-HHHHHHHHHHHhccCCCEEEEEEec
Q 025715 110 VVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQ-LILAGLTVVTHVLKEGGKFIAKIFR 169 (249)
Q Consensus 110 ~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~-l~~~~l~~a~~~Lk~gG~lv~k~~~ 169 (249)
.+.++++++|.|+++.+..|... .+ .+ .....+..+.++|+|||.+.+++-.
T Consensus 185 --l~~~~~~s~D~I~lnFPdPW~Kk---rH---RRlv~~~fL~e~~RvLkpGG~l~l~TD~ 237 (390)
T PRK14121 185 --LELLPSNSVEKIFVHFPVPWDKK---PH---RRVISEDFLNEALRVLKPGGTLELRTDS 237 (390)
T ss_pred --hhhCCCCceeEEEEeCCCCcccc---ch---hhccHHHHHHHHHHHcCCCcEEEEEEEC
Confidence 23466789999998764333211 11 12 2356789999999999999997643
No 92
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=98.92 E-value=1.8e-08 Score=88.43 Aligned_cols=115 Identities=17% Similarity=0.197 Sum_probs=77.6
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC--------CCCceE----eecCCCChhh
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP--------IEGVIQ----VQGDITNART 107 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~--------~~~v~~----~~gDi~~~~~ 107 (249)
++|.+|||+|||+|.++.++++. + ..+|+|+|+.|.+. ..+|.. -..+...
T Consensus 161 ~~g~~vlDvGcGSGILaIAa~kL-G-------------A~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~--- 223 (300)
T COG2264 161 KKGKTVLDVGCGSGILAIAAAKL-G-------------AKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLE--- 223 (300)
T ss_pred cCCCEEEEecCChhHHHHHHHHc-C-------------CceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchh---
Confidence 58999999999999999888765 4 36899999999652 123321 1111111
Q ss_pred HHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCCCHHHHHHHH-hcCCCe
Q 025715 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQL-KLFFPV 186 (249)
Q Consensus 108 ~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~~~l~~~l-~~~f~~ 186 (249)
....+.||+|++|.- ++.+......+.++|||||+++++=.-......+...+ ++-|.-
T Consensus 224 ------~~~~~~~DvIVANIL--------------A~vl~~La~~~~~~lkpgg~lIlSGIl~~q~~~V~~a~~~~gf~v 283 (300)
T COG2264 224 ------VPENGPFDVIVANIL--------------AEVLVELAPDIKRLLKPGGRLILSGILEDQAESVAEAYEQAGFEV 283 (300)
T ss_pred ------hcccCcccEEEehhh--------------HHHHHHHHHHHHHHcCCCceEEEEeehHhHHHHHHHHHHhCCCeE
Confidence 123368999999841 22234566778899999999998755445566777777 345766
Q ss_pred eEEec
Q 025715 187 VTFAK 191 (249)
Q Consensus 187 v~~~k 191 (249)
+....
T Consensus 284 ~~~~~ 288 (300)
T COG2264 284 VEVLE 288 (300)
T ss_pred eEEEe
Confidence 65543
No 93
>PRK07402 precorrin-6B methylase; Provisional
Probab=98.92 E-value=7.3e-09 Score=86.11 Aligned_cols=107 Identities=19% Similarity=0.178 Sum_probs=73.1
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhhH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~~ 108 (249)
.++.+|||+|||+|.++..++...+ .++|+++|+++.. .+.+++++.+|+.+.
T Consensus 39 ~~~~~VLDiG~G~G~~~~~la~~~~-------------~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~--- 102 (196)
T PRK07402 39 EPDSVLWDIGAGTGTIPVEAGLLCP-------------KGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPEC--- 102 (196)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHCC-------------CCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHH---
Confidence 5788999999999999998886543 5799999999732 134678888887431
Q ss_pred HHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCCCHHHHHHHHh
Q 025715 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLK 181 (249)
Q Consensus 109 ~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~~~l~~~l~ 181 (249)
...+. ..+|.|+.++. . + ...++..+.++|+|||.|++.....+....+...++
T Consensus 103 ---~~~~~-~~~d~v~~~~~------~--~-------~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~ 156 (196)
T PRK07402 103 ---LAQLA-PAPDRVCIEGG------R--P-------IKEILQAVWQYLKPGGRLVATASSLEGLYAISEGLA 156 (196)
T ss_pred ---HhhCC-CCCCEEEEECC------c--C-------HHHHHHHHHHhcCCCeEEEEEeecHHHHHHHHHHHH
Confidence 11122 34677777541 0 1 134678889999999999987654443344444444
No 94
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=98.91 E-value=3.2e-09 Score=94.93 Aligned_cols=95 Identities=12% Similarity=0.067 Sum_probs=69.0
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC--------C----CCCceEeecCCCChhhH
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--------P----IEGVIQVQGDITNARTA 108 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~--------~----~~~v~~~~gDi~~~~~~ 108 (249)
+|.+|||+|||+|.++..+++. + ..|+|+|+++.. . ..+++++++|+.+..
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~-g--------------~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~-- 193 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARM-G--------------ATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLA-- 193 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHc-C--------------CEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhh--
Confidence 5679999999999999988753 2 699999999732 0 135778888875532
Q ss_pred HHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEec
Q 025715 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFR 169 (249)
Q Consensus 109 ~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~ 169 (249)
+.+++||+|++....... .+. ..++..+.++|||||.+++.+..
T Consensus 194 ------~~~~~FD~Vi~~~vLeHv----~d~-------~~~L~~l~r~LkPGG~liist~n 237 (322)
T PLN02396 194 ------DEGRKFDAVLSLEVIEHV----ANP-------AEFCKSLSALTIPNGATVLSTIN 237 (322)
T ss_pred ------hccCCCCEEEEhhHHHhc----CCH-------HHHHHHHHHHcCCCcEEEEEECC
Confidence 234689999996543221 121 24678888999999999997764
No 95
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=98.91 E-value=4.9e-09 Score=90.40 Aligned_cols=99 Identities=23% Similarity=0.201 Sum_probs=71.2
Q ss_pred ccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CC-CCceEeecCCCChh
Q 025715 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNAR 106 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~-~~v~~~~gDi~~~~ 106 (249)
+.++.+|||+|||+|..+..+++.+.. +.++|+|+|+++.. .. .+++++++|+.+.+
T Consensus 54 ~~~~~~vLDlGcGtG~~~~~l~~~~~~-----------~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~ 122 (247)
T PRK15451 54 VQPGTQVYDLGCSLGAATLSVRRNIHH-----------DNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIA 122 (247)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHhcCC-----------CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCC
Confidence 367889999999999999888875421 35799999999832 11 26888899986632
Q ss_pred hHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEE
Q 025715 107 TAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKI 167 (249)
Q Consensus 107 ~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~ 167 (249)
...+|+|++....... +.. ....++..+.+.|||||.|++..
T Consensus 123 ----------~~~~D~vv~~~~l~~l-----~~~----~~~~~l~~i~~~LkpGG~l~l~e 164 (247)
T PRK15451 123 ----------IENASMVVLNFTLQFL-----EPS----ERQALLDKIYQGLNPGGALVLSE 164 (247)
T ss_pred ----------CCCCCEEehhhHHHhC-----CHH----HHHHHHHHHHHhcCCCCEEEEEE
Confidence 2458999987543221 111 12357888999999999999864
No 96
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=98.90 E-value=1.2e-08 Score=84.08 Aligned_cols=117 Identities=19% Similarity=0.238 Sum_probs=79.4
Q ss_pred CeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCC---------CCCCCceEeecCCCChhhHHHHHH
Q 025715 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM---------APIEGVIQVQGDITNARTAEVVIR 113 (249)
Q Consensus 43 ~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~---------~~~~~v~~~~gDi~~~~~~~~i~~ 113 (249)
.++||+|||.|.++..|+.+. ..++++|+++. ...++|++.++|+.+..
T Consensus 45 ~~alEvGCs~G~lT~~LA~rC---------------d~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~~------- 102 (201)
T PF05401_consen 45 RRALEVGCSIGVLTERLAPRC---------------DRLLAVDISPRALARARERLAGLPHVEWIQADVPEFW------- 102 (201)
T ss_dssp EEEEEE--TTSHHHHHHGGGE---------------EEEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT---------
T ss_pred ceeEecCCCccHHHHHHHHhh---------------CceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCCC-------
Confidence 689999999999999999886 48999999983 24678999999997742
Q ss_pred hcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecC---------CCHHHHHHHHhcCC
Q 025715 114 HFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRG---------KDTSLLYCQLKLFF 184 (249)
Q Consensus 114 ~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~---------~~~~~l~~~l~~~f 184 (249)
+.++||+|+.--...+- .+. +.+..++......|+|||.||+-.++. ...+.+..++...+
T Consensus 103 --P~~~FDLIV~SEVlYYL----~~~----~~L~~~l~~l~~~L~pgG~LV~g~~rd~~c~~wgh~~ga~tv~~~~~~~~ 172 (201)
T PF05401_consen 103 --PEGRFDLIVLSEVLYYL----DDA----EDLRAALDRLVAALAPGGHLVFGHARDANCRRWGHAAGAETVLEMLQEHL 172 (201)
T ss_dssp ---SS-EEEEEEES-GGGS----SSH----HHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHHTT-S--HHHHHHHHHHHS
T ss_pred --CCCCeeEEEEehHhHcC----CCH----HHHHHHHHHHHHHhCCCCEEEEEEecCCcccccCcccchHHHHHHHHHHh
Confidence 56899999875432221 121 123456777888999999999977642 23566888888888
Q ss_pred CeeEEec
Q 025715 185 PVVTFAK 191 (249)
Q Consensus 185 ~~v~~~k 191 (249)
.+|..+.
T Consensus 173 ~~~~~~~ 179 (201)
T PF05401_consen 173 TEVERVE 179 (201)
T ss_dssp EEEEEEE
T ss_pred hheeEEE
Confidence 7776653
No 97
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=98.90 E-value=7.5e-09 Score=88.60 Aligned_cols=99 Identities=18% Similarity=0.057 Sum_probs=71.6
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC---------C---CCCceEeecCCCChhh
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------P---IEGVIQVQGDITNART 107 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~---------~---~~~v~~~~gDi~~~~~ 107 (249)
.++.+|||+|||+|.++..+++++.. +.++|+|+|+++.. . ..+++++++|+.+.+
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~-----------p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~- 119 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQ-----------PNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVE- 119 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCC-----------CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC-
Confidence 57789999999999999999887531 35799999998732 1 135788899987643
Q ss_pred HHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEe
Q 025715 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (249)
Q Consensus 108 ~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~ 168 (249)
...+|+|++....... ... -...++..+.+.|+|||.|++...
T Consensus 120 ---------~~~~d~v~~~~~l~~~-----~~~----~~~~~l~~i~~~LkpgG~l~i~d~ 162 (239)
T TIGR00740 120 ---------IKNASMVILNFTLQFL-----PPE----DRIALLTKIYEGLNPNGVLVLSEK 162 (239)
T ss_pred ---------CCCCCEEeeecchhhC-----CHH----HHHHHHHHHHHhcCCCeEEEEeec
Confidence 2358999987654321 111 123578889999999999998643
No 98
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.90 E-value=8e-09 Score=101.38 Aligned_cols=107 Identities=16% Similarity=0.063 Sum_probs=74.8
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CC--CCceEeecCCCChhh
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI--EGVIQVQGDITNART 107 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~--~~v~~~~gDi~~~~~ 107 (249)
+|.+|||||||+|+++.+++.. + ..+|++||+++.+ .+ .+++++++|+.+.-
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~-G-------------a~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l- 602 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALG-G-------------AKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWL- 602 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHC-C-------------CCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHH-
Confidence 5789999999999999999874 3 2579999999842 12 25788999986521
Q ss_pred HHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEe
Q 025715 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (249)
Q Consensus 108 ~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~ 168 (249)
+.+ +++||+|++|++.-..+....+.....+.+...+..+.++|+|||.+++...
T Consensus 603 -----~~~-~~~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~ 657 (702)
T PRK11783 603 -----KEA-REQFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNN 657 (702)
T ss_pred -----HHc-CCCcCEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 112 3689999999853322211012222344456778889999999999987554
No 99
>PHA03412 putative methyltransferase; Provisional
Probab=98.90 E-value=5.4e-09 Score=88.90 Aligned_cols=102 Identities=16% Similarity=0.244 Sum_probs=68.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC------CCCCceEeecCCCChhhHHHHHHhc
Q 025715 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PIEGVIQVQGDITNARTAEVVIRHF 115 (249)
Q Consensus 42 g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~------~~~~v~~~~gDi~~~~~~~~i~~~~ 115 (249)
+.+|||+|||+|.++..+++++... ....|++||+++.+ ..+++.++++|+.... +
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~----------~~~~V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~~~--------~ 111 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYA----------KPREIVCVELNHTYYKLGKRIVPEATWINADALTTE--------F 111 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccC----------CCcEEEEEECCHHHHHHHHhhccCCEEEEcchhccc--------c
Confidence 5799999999999999998875311 23689999999853 2356788899987532 1
Q ss_pred CCCcccEEEeCCCCCCCCCCCcCH-HHHHHHHHHHHHHHHHhccCCCE
Q 025715 116 DGCKADLVVCDGAPDVTGLHDMDE-FVQSQLILAGLTVVTHVLKEGGK 162 (249)
Q Consensus 116 ~~~~~DlVlsD~~~~~~g~~~~~~-~~~~~l~~~~l~~a~~~Lk~gG~ 162 (249)
..+||+|++|+++......+... .....+....+..|.+++++|+.
T Consensus 112 -~~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 112 -DTLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred -cCCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 35899999998654322111100 11123455677888886666654
No 100
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=98.88 E-value=1.1e-08 Score=85.82 Aligned_cols=100 Identities=19% Similarity=0.224 Sum_probs=72.8
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC---------CCCCceEeecCCCChhhHHH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------PIEGVIQVQGDITNARTAEV 110 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~---------~~~~v~~~~gDi~~~~~~~~ 110 (249)
.++.+|||+|||+|.++..+++..+ ..++++++|+++.. ...++++..+|+.+..
T Consensus 38 ~~~~~vldiG~G~G~~~~~~~~~~~------------~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~---- 101 (223)
T TIGR01934 38 FKGQKVLDVACGTGDLAIELAKSAP------------DRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALP---- 101 (223)
T ss_pred CCCCeEEEeCCCCChhHHHHHHhcC------------CCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCC----
Confidence 3678999999999999999988764 23689999998632 1235778888887643
Q ss_pred HHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecC
Q 025715 111 VIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRG 170 (249)
Q Consensus 111 i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~ 170 (249)
+..++||+|++...... ... ...++..+.++|+|||.+++..+..
T Consensus 102 ----~~~~~~D~i~~~~~~~~-----~~~------~~~~l~~~~~~L~~gG~l~~~~~~~ 146 (223)
T TIGR01934 102 ----FEDNSFDAVTIAFGLRN-----VTD------IQKALREMYRVLKPGGRLVILEFSK 146 (223)
T ss_pred ----CCCCcEEEEEEeeeeCC-----ccc------HHHHHHHHHHHcCCCcEEEEEEecC
Confidence 23468999998653321 111 1357888999999999999866543
No 101
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=98.88 E-value=5.5e-09 Score=77.45 Aligned_cols=90 Identities=27% Similarity=0.408 Sum_probs=61.4
Q ss_pred EEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC----------CCCCceEeecCCCChhhHHHHHHh
Q 025715 45 VVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------PIEGVIQVQGDITNARTAEVVIRH 114 (249)
Q Consensus 45 vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~----------~~~~v~~~~gDi~~~~~~~~i~~~ 114 (249)
|||+|||+|..+..+.+.... ++..+++++|+++.. .-..++++++|+.+.+.
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~----------~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~------- 63 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDA----------GPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPF------- 63 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS---------------SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHH-------
T ss_pred CEEeecCCcHHHHHHHHHhhh----------cccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcc-------
Confidence 799999999999999988621 024799999999842 11378999999988531
Q ss_pred cCCCcccEEEeCCC-CCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCC
Q 025715 115 FDGCKADLVVCDGA-PDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGG 161 (249)
Q Consensus 115 ~~~~~~DlVlsD~~-~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG 161 (249)
..++||+|++.+. +.. .+. +.+...++.+.++|+|||
T Consensus 64 -~~~~~D~v~~~~~~~~~-----~~~----~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 64 -SDGKFDLVVCSGLSLHH-----LSP----EELEALLRRIARLLRPGG 101 (101)
T ss_dssp -HSSSEEEEEE-TTGGGG-----SSH----HHHHHHHHHHHHTEEEEE
T ss_pred -cCCCeeEEEEcCCccCC-----CCH----HHHHHHHHHHHHHhCCCC
Confidence 3469999999543 332 121 123567888999999998
No 102
>PHA03411 putative methyltransferase; Provisional
Probab=98.87 E-value=9.7e-09 Score=89.24 Aligned_cols=104 Identities=17% Similarity=0.196 Sum_probs=72.3
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC------CCCCceEeecCCCChhhHHHHHHh
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PIEGVIQVQGDITNARTAEVVIRH 114 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~------~~~~v~~~~gDi~~~~~~~~i~~~ 114 (249)
.+.+|||+|||+|.++..++++.+ ..+|+++|+++.. ..+++.++++|+.+..
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~-------------~~~V~gVDisp~al~~Ar~n~~~v~~v~~D~~e~~-------- 122 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCK-------------PEKIVCVELNPEFARIGKRLLPEAEWITSDVFEFE-------- 122 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCC-------------CCEEEEEECCHHHHHHHHHhCcCCEEEECchhhhc--------
Confidence 456999999999999998887653 3699999999843 2457888999987632
Q ss_pred cCCCcccEEEeCCCCCCCCCCCcCHHHHH-------H-H-HHHHHHHHHHhccCCCEEEEE
Q 025715 115 FDGCKADLVVCDGAPDVTGLHDMDEFVQS-------Q-L-ILAGLTVVTHVLKEGGKFIAK 166 (249)
Q Consensus 115 ~~~~~~DlVlsD~~~~~~g~~~~~~~~~~-------~-l-~~~~l~~a~~~Lk~gG~lv~k 166 (249)
...+||+|++|+++......+....... + + ..+.+.....+|+|+|.+.+.
T Consensus 123 -~~~kFDlIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~ 182 (279)
T PHA03411 123 -SNEKFDVVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA 182 (279)
T ss_pred -ccCCCcEEEEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE
Confidence 2368999999987654322111111111 1 1 345667777899999987764
No 103
>PRK06922 hypothetical protein; Provisional
Probab=98.86 E-value=9.5e-09 Score=98.40 Aligned_cols=103 Identities=22% Similarity=0.290 Sum_probs=72.1
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC--------CC--CCceEeecCCCChhhHHH
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--------PI--EGVIQVQGDITNARTAEV 110 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~--------~~--~~v~~~~gDi~~~~~~~~ 110 (249)
++.+|||+|||+|.++..+++..+ .+.|+|+|+++.. .. .++.++++|+.+.+
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~P-------------~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp---- 480 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEETE-------------DKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLS---- 480 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCC-------------CCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCc----
Confidence 578999999999999988887753 5899999999842 01 24566788876532
Q ss_pred HHHhcCCCcccEEEeCCCCCC-------CCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEE
Q 025715 111 VIRHFDGCKADLVVCDGAPDV-------TGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKI 167 (249)
Q Consensus 111 i~~~~~~~~~DlVlsD~~~~~-------~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~ 167 (249)
..+.+++||+|+++..... .+. ..+ ..-...++..+.++|||||.+++..
T Consensus 481 --~~fedeSFDvVVsn~vLH~L~syIp~~g~-~f~----~edl~kiLreI~RVLKPGGrLII~D 537 (677)
T PRK06922 481 --SSFEKESVDTIVYSSILHELFSYIEYEGK-KFN----HEVIKKGLQSAYEVLKPGGRIIIRD 537 (677)
T ss_pred --cccCCCCEEEEEEchHHHhhhhhcccccc-ccc----HHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 1245678999998753221 010 001 1223567889999999999999854
No 104
>PRK00811 spermidine synthase; Provisional
Probab=98.84 E-value=5.5e-08 Score=85.59 Aligned_cols=141 Identities=21% Similarity=0.204 Sum_probs=91.5
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC----------------CCCCceEeecCCC
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------------PIEGVIQVQGDIT 103 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~----------------~~~~v~~~~gDi~ 103 (249)
....+||++|||.|+.+..++++.+ ..+|++||+++.. .-++++++.+|..
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~-------------~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~ 141 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPS-------------VEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGI 141 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCC-------------CCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchH
Confidence 3467999999999999998876532 3689999999831 1246778888875
Q ss_pred ChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHH-HHHHHHHHHHhccCCCEEEEEEecC----CCHHHHHH
Q 025715 104 NARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQL-ILAGLTVVTHVLKEGGKFIAKIFRG----KDTSLLYC 178 (249)
Q Consensus 104 ~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l-~~~~l~~a~~~Lk~gG~lv~k~~~~----~~~~~l~~ 178 (249)
.. +. . ..++||+|++|..... +. .. .+ ....+..+.+.|+|||.+++..-.. .....+..
T Consensus 142 ~~-----l~-~-~~~~yDvIi~D~~dp~-~~---~~----~l~t~ef~~~~~~~L~~gGvlv~~~~~~~~~~~~~~~i~~ 206 (283)
T PRK00811 142 KF-----VA-E-TENSFDVIIVDSTDPV-GP---AE----GLFTKEFYENCKRALKEDGIFVAQSGSPFYQADEIKDMHR 206 (283)
T ss_pred HH-----Hh-h-CCCcccEEEECCCCCC-Cc---hh----hhhHHHHHHHHHHhcCCCcEEEEeCCCcccCHHHHHHHHH
Confidence 42 11 1 3468999999975332 11 11 11 2456778899999999999753322 12345666
Q ss_pred HHhcCCCeeEEecC-CCCCCCCceEEEEEee
Q 025715 179 QLKLFFPVVTFAKP-KSSRNSSIEAFAVCEN 208 (249)
Q Consensus 179 ~l~~~f~~v~~~kP-~~sr~~s~E~y~v~~g 208 (249)
.++..|..|..+.. ..+-+...-.|++|..
T Consensus 207 tl~~~F~~v~~~~~~vp~~~~~~w~f~~as~ 237 (283)
T PRK00811 207 KLKEVFPIVRPYQAAIPTYPSGLWSFTFASK 237 (283)
T ss_pred HHHHHCCCEEEEEeECCcccCchheeEEeec
Confidence 77778998887642 2233333335677754
No 105
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=98.84 E-value=1.7e-08 Score=87.22 Aligned_cols=115 Identities=17% Similarity=0.167 Sum_probs=71.4
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC---CCCceEeecCCCChhhHHHHHHhcC
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP---IEGVIQVQGDITNARTAEVVIRHFD 116 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~---~~~v~~~~gDi~~~~~~~~i~~~~~ 116 (249)
.++.+|||+|||+|..+.++++. + ..+|+|+|+++... ..++.. .++.+... +. ..
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~~~~-g-------------~~~v~giDis~~~l~~A~~n~~~--~~~~~~~~---~~--~~ 176 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAAAKL-G-------------AKKVLAVDIDPQAVEAARENAEL--NGVELNVY---LP--QG 176 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHc-C-------------CCeEEEEECCHHHHHHHHHHHHH--cCCCceEE---Ec--cC
Confidence 57899999999999888776653 3 24699999998541 011100 01100000 00 01
Q ss_pred CCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCCCHHHHHHHHhcC-CCeeEE
Q 025715 117 GCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLF-FPVVTF 189 (249)
Q Consensus 117 ~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~~~l~~~l~~~-f~~v~~ 189 (249)
+.+||+|++|... ..+...+..+.++|||||.+++.-+.......+...+... |..+..
T Consensus 177 ~~~fD~Vvani~~--------------~~~~~l~~~~~~~LkpgG~lilsgi~~~~~~~v~~~l~~~Gf~~~~~ 236 (250)
T PRK00517 177 DLKADVIVANILA--------------NPLLELAPDLARLLKPGGRLILSGILEEQADEVLEAYEEAGFTLDEV 236 (250)
T ss_pred CCCcCEEEEcCcH--------------HHHHHHHHHHHHhcCCCcEEEEEECcHhhHHHHHHHHHHCCCEEEEE
Confidence 1269999997521 1123467788999999999999766555666777766654 654443
No 106
>PRK05785 hypothetical protein; Provisional
Probab=98.84 E-value=1.1e-08 Score=87.15 Aligned_cols=88 Identities=22% Similarity=0.217 Sum_probs=62.9
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-C--CCCceEeecCCCChhhHHHHHHhcC
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-P--IEGVIQVQGDITNARTAEVVIRHFD 116 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-~--~~~v~~~~gDi~~~~~~~~i~~~~~ 116 (249)
.++.+|||+|||||.++..++++.+ ..|+|+|+++.. . .....++++|+.+.+ +.
T Consensus 50 ~~~~~VLDlGcGtG~~~~~l~~~~~--------------~~v~gvD~S~~Ml~~a~~~~~~~~~d~~~lp--------~~ 107 (226)
T PRK05785 50 GRPKKVLDVAAGKGELSYHFKKVFK--------------YYVVALDYAENMLKMNLVADDKVVGSFEALP--------FR 107 (226)
T ss_pred CCCCeEEEEcCCCCHHHHHHHHhcC--------------CEEEEECCCHHHHHHHHhccceEEechhhCC--------CC
Confidence 3578999999999999988887643 699999999842 1 112345678876643 45
Q ss_pred CCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCC
Q 025715 117 GCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEG 160 (249)
Q Consensus 117 ~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~g 160 (249)
+++||+|++..... +.+. ...++.++.++|||.
T Consensus 108 d~sfD~v~~~~~l~-----~~~d------~~~~l~e~~RvLkp~ 140 (226)
T PRK05785 108 DKSFDVVMSSFALH-----ASDN------IEKVIAEFTRVSRKQ 140 (226)
T ss_pred CCCEEEEEecChhh-----ccCC------HHHHHHHHHHHhcCc
Confidence 78999999976432 1211 135788999999993
No 107
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=98.83 E-value=5.1e-09 Score=83.19 Aligned_cols=99 Identities=21% Similarity=0.308 Sum_probs=68.4
Q ss_pred ccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC-CCCceEeecCCCChhhHHHHHHhcCC
Q 025715 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP-IEGVIQVQGDITNARTAEVVIRHFDG 117 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~-~~~v~~~~gDi~~~~~~~~i~~~~~~ 117 (249)
..++.+|||+|||+|.++..+++. + .+++++|+++... ...+....-+..... ...
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~-~--------------~~~~g~D~~~~~~~~~~~~~~~~~~~~~~--------~~~ 76 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKR-G--------------FEVTGVDISPQMIEKRNVVFDNFDAQDPP--------FPD 76 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHT-T--------------SEEEEEESSHHHHHHTTSEEEEEECHTHH--------CHS
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHh-C--------------CEEEEEECCHHHHhhhhhhhhhhhhhhhh--------ccc
Confidence 467889999999999999999654 3 5999999997331 122222222222221 235
Q ss_pred CcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCC
Q 025715 118 CKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGK 171 (249)
Q Consensus 118 ~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~ 171 (249)
++||+|+|........ + ....+..+.++|||||.+++.+....
T Consensus 77 ~~fD~i~~~~~l~~~~----d-------~~~~l~~l~~~LkpgG~l~~~~~~~~ 119 (161)
T PF13489_consen 77 GSFDLIICNDVLEHLP----D-------PEEFLKELSRLLKPGGYLVISDPNRD 119 (161)
T ss_dssp SSEEEEEEESSGGGSS----H-------HHHHHHHHHHCEEEEEEEEEEEEBTT
T ss_pred cchhhHhhHHHHhhcc----c-------HHHHHHHHHHhcCCCCEEEEEEcCCc
Confidence 7999999987654321 1 13578889999999999999887543
No 108
>PLN03075 nicotianamine synthase; Provisional
Probab=98.82 E-value=2.7e-08 Score=87.46 Aligned_cols=127 Identities=10% Similarity=0.104 Sum_probs=84.4
Q ss_pred CCCeEEEEcCCCChHHHHHHH-HhcCCCCCCCCCCCCCCCeEEEecCCCCC------------CC-CCceEeecCCCChh
Q 025715 41 GVKRVVDLCAAPGSWSQVLSR-KLYLPAKLSPDSREGDLPLIVAIDLQPMA------------PI-EGVIQVQGDITNAR 106 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~-~~~~~~~~~~~~~~~~~~~vvavDi~~~~------------~~-~~v~~~~gDi~~~~ 106 (249)
++.+|+|+|||||+.+..+.. ... ++++++++|+++.+ .+ ++++|.++|+.+..
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~------------p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~ 190 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHL------------PTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVT 190 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcC------------CCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcc
Confidence 668999999999988776543 333 46899999999832 12 46999999997732
Q ss_pred hHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCCCHHHHHH-----HHh
Q 025715 107 TAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYC-----QLK 181 (249)
Q Consensus 107 ~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~~~l~~-----~l~ 181 (249)
. ..+.||+|+++.-..+. . .+. ..++....+.|+|||.|++....+. ..+++ ..-
T Consensus 191 ~--------~l~~FDlVF~~ALi~~d-k--~~k-------~~vL~~l~~~LkPGG~Lvlr~~~G~--r~~LYp~v~~~~~ 250 (296)
T PLN03075 191 E--------SLKEYDVVFLAALVGMD-K--EEK-------VKVIEHLGKHMAPGALLMLRSAHGA--RAFLYPVVDPCDL 250 (296)
T ss_pred c--------ccCCcCEEEEecccccc-c--ccH-------HHHHHHHHHhcCCCcEEEEecccch--HhhcCCCCChhhC
Confidence 1 12579999998321110 0 111 3578888999999999999764321 11221 112
Q ss_pred cCCCeeEEecCCCCCCCCc
Q 025715 182 LFFPVVTFAKPKSSRNSSI 200 (249)
Q Consensus 182 ~~f~~v~~~kP~~sr~~s~ 200 (249)
+-|+....++|... .-|+
T Consensus 251 ~gf~~~~~~~P~~~-v~Ns 268 (296)
T PLN03075 251 RGFEVLSVFHPTDE-VINS 268 (296)
T ss_pred CCeEEEEEECCCCC-ceee
Confidence 26888899999654 4454
No 109
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=98.82 E-value=1.6e-08 Score=85.54 Aligned_cols=93 Identities=20% Similarity=0.189 Sum_probs=67.7
Q ss_pred CeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CC-CCceEeecCCCChhhHHH
Q 025715 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNARTAEV 110 (249)
Q Consensus 43 ~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~-~~v~~~~gDi~~~~~~~~ 110 (249)
++|||+|||+|+++..+++..+ ...|+++|+++.. .+ .+++++.+|+...+
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~-------------~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~---- 63 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHP-------------HLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDP---- 63 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCC-------------CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCC----
Confidence 3799999999999999988764 4789999998732 01 34678888885532
Q ss_pred HHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEe
Q 025715 111 VIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (249)
Q Consensus 111 i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~ 168 (249)
+ .++||+|++.......+ + ....+..+.++|+|||.+++..+
T Consensus 64 ----~-~~~fD~I~~~~~l~~~~----~-------~~~~l~~~~~~LkpgG~l~i~~~ 105 (224)
T smart00828 64 ----F-PDTYDLVFGFEVIHHIK----D-------KMDLFSNISRHLKDGGHLVLADF 105 (224)
T ss_pred ----C-CCCCCEeehHHHHHhCC----C-------HHHHHHHHHHHcCCCCEEEEEEc
Confidence 1 35799999865433221 1 12467888999999999998654
No 110
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=98.81 E-value=7.8e-09 Score=76.16 Aligned_cols=88 Identities=22% Similarity=0.223 Sum_probs=49.4
Q ss_pred EEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC---------C--CCceEeecCCCChhhHHHHHHh
Q 025715 46 VDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP---------I--EGVIQVQGDITNARTAEVVIRH 114 (249)
Q Consensus 46 LDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~---------~--~~v~~~~gDi~~~~~~~~i~~~ 114 (249)
||+|||+|.++..+.+..+ ..+++++|+++... . .+......+..+.. +.
T Consensus 1 LdiGcG~G~~~~~l~~~~~-------------~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~------~~ 61 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELP-------------DARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLF------DY 61 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--------------EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---------C
T ss_pred CEeCccChHHHHHHHHhCC-------------CCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChh------hc
Confidence 7999999999999998863 57999999998532 1 12223333333311 11
Q ss_pred cCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEE
Q 025715 115 FDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKF 163 (249)
Q Consensus 115 ~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~l 163 (249)
...++||+|++.....+. .+ ....+..+.++|+|||.|
T Consensus 62 ~~~~~fD~V~~~~vl~~l----~~-------~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 62 DPPESFDLVVASNVLHHL----ED-------IEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp CC----SEEEEE-TTS------S--------HHHHHHHHTTT-TSS-EE
T ss_pred ccccccceehhhhhHhhh----hh-------HHHHHHHHHHHcCCCCCC
Confidence 122589999997655432 11 235788899999999986
No 111
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=98.81 E-value=4.1e-08 Score=86.66 Aligned_cols=112 Identities=24% Similarity=0.253 Sum_probs=73.2
Q ss_pred ccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC--------CCCc--eEeecCCCChhhH
Q 025715 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP--------IEGV--IQVQGDITNARTA 108 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~--------~~~v--~~~~gDi~~~~~~ 108 (249)
..+|.+|||+|||+|..+.++++. | ..+|+|+|++|.+. +.++ ++......+
T Consensus 159 ~~~g~~vLDvG~GSGILaiaA~kl-G-------------A~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~~~~---- 220 (295)
T PF06325_consen 159 VKPGKRVLDVGCGSGILAIAAAKL-G-------------AKKVVAIDIDPLAVEAARENAELNGVEDRIEVSLSED---- 220 (295)
T ss_dssp SSTTSEEEEES-TTSHHHHHHHHT-T-------------BSEEEEEESSCHHHHHHHHHHHHTT-TTCEEESCTSC----
T ss_pred ccCCCEEEEeCCcHHHHHHHHHHc-C-------------CCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEEEecc----
Confidence 367899999999999999888765 4 36899999999641 1121 111111111
Q ss_pred HHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCCCHHHHHHHHhcCCCeeE
Q 025715 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVT 188 (249)
Q Consensus 109 ~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~~~l~~~l~~~f~~v~ 188 (249)
...++||+|++|.-. ..+........++|+|||.|+++=+..+....+...+++-|+-+.
T Consensus 221 ------~~~~~~dlvvANI~~--------------~vL~~l~~~~~~~l~~~G~lIlSGIl~~~~~~v~~a~~~g~~~~~ 280 (295)
T PF06325_consen 221 ------LVEGKFDLVVANILA--------------DVLLELAPDIASLLKPGGYLILSGILEEQEDEVIEAYKQGFELVE 280 (295)
T ss_dssp ------TCCS-EEEEEEES-H--------------HHHHHHHHHCHHHEEEEEEEEEEEEEGGGHHHHHHHHHTTEEEEE
T ss_pred ------cccccCCEEEECCCH--------------HHHHHHHHHHHHhhCCCCEEEEccccHHHHHHHHHHHHCCCEEEE
Confidence 123789999998621 123345556678999999999987766777788877765454433
No 112
>PF14314 Methyltrans_Mon: Virus-capping methyltransferase
Probab=98.80 E-value=2.9e-07 Score=88.51 Aligned_cols=191 Identities=16% Similarity=0.120 Sum_probs=126.7
Q ss_pred CCCCChhHHHHHHhccchhhhhhHHhhhhhcCcccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEec
Q 025715 6 RDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAID 85 (249)
Q Consensus 6 ~~~~d~~~~~a~~~~~~~ra~~KL~ei~~~~~~~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavD 85 (249)
.+..||...=.|-..+.+=|-||+..|...+++- + .-+|-.|-|+||.+.++++..+ .++++=..
T Consensus 289 pr~qnPlISGLR~~Q~ATGAHYKlRsIL~~~~i~-~-~d~l~~GDGSGGita~lLR~~p-------------~sr~iFNS 353 (675)
T PF14314_consen 289 PRIQNPLISGLRLFQLATGAHYKLRSILKNLNIK-Y-RDALCGGDGSGGITACLLRMNP-------------TSRGIFNS 353 (675)
T ss_pred ccccCcchhhhhhhcccccchhhHHHHHHhcCCC-c-ceeEEEecCchHHHHHHHHhCc-------------ccceeeec
Confidence 3455666666666666777889999999999853 2 4568888999999999987765 34444333
Q ss_pred CCCCC--------C--------CCCce----------EeecCCCChhhHHH---HHHhcCCCcccEEEeCCCCCCCCCCC
Q 025715 86 LQPMA--------P--------IEGVI----------QVQGDITNARTAEV---VIRHFDGCKADLVVCDGAPDVTGLHD 136 (249)
Q Consensus 86 i~~~~--------~--------~~~v~----------~~~gDi~~~~~~~~---i~~~~~~~~~DlVlsD~~~~~~g~~~ 136 (249)
+.++. + +.+.. -.--|++++++=+. +.+.. +-++|+|++||. +
T Consensus 354 LL~~~~~~l~Gs~P~PPsAi~~~g~~~~Rcvn~~~~W~~pSDLs~~~TW~YF~~l~~~~-~~~idLiv~DmE--V----- 425 (675)
T PF14314_consen 354 LLELDGSDLRGSHPSPPSAIMALGNDKSRCVNLDTCWEHPSDLSDPETWKYFVSLKKQH-NLSIDLIVMDME--V----- 425 (675)
T ss_pred cccccCCCCCCCCCCCcHHHhccCcccceeecchhhhcCccccCCccHHHHHHHHHhhc-CCcccEEEEece--e-----
Confidence 32211 1 00100 01236777654332 22222 257999999995 2
Q ss_pred cCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecC--C-CHHHHHHHHhcCCCeeEEecCCCCCCCCceEEEEEeeccCCC
Q 025715 137 MDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRG--K-DTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAVCENYFPPE 213 (249)
Q Consensus 137 ~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~--~-~~~~l~~~l~~~f~~v~~~kP~~sr~~s~E~y~v~~g~~~~~ 213 (249)
.|.....+.-...-..+..+|.++|++++|++-+ . ....++..+.++|++|.++.+..|-..++|+|+||++.+...
T Consensus 426 ~d~~~~~kIe~~l~~~~~~ll~~~gtLIfKTYlt~l~~~~~~il~~lg~~F~~V~l~qT~~SSs~TSEVYlv~~~~~~~~ 505 (675)
T PF14314_consen 426 RDDSIIRKIEDNLRDYVHSLLEEPGTLIFKTYLTRLLSPDYNILDLLGRYFKSVELVQTQFSSSFTSEVYLVFQKLKKFP 505 (675)
T ss_pred cChHHHHHHHHHHHHHHHHhcCCCcEEEEehhHhhhhcchhhHHHHHHhhcCceEEEECCCCCCCceEEEEEEecccCCC
Confidence 2332222333334556778999999999999843 2 233577778889999999999999999999999999988866
Q ss_pred CCCchhhh
Q 025715 214 GFNPKDLH 221 (249)
Q Consensus 214 ~~~~~~~~ 221 (249)
++.+++
T Consensus 506 --~~~~~~ 511 (675)
T PF14314_consen 506 --DRPYVD 511 (675)
T ss_pred --CcCCCC
Confidence 444443
No 113
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=98.80 E-value=1.3e-08 Score=89.71 Aligned_cols=94 Identities=16% Similarity=0.086 Sum_probs=66.0
Q ss_pred ccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC--------C--CCceEeecCCCChhhH
Q 025715 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP--------I--EGVIQVQGDITNARTA 108 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~--------~--~~v~~~~gDi~~~~~~ 108 (249)
+++ .+|||+|||+|.++.++++. + .+|+|+|+++... . .++++..+|+....
T Consensus 119 ~~~-~~vLDlGcG~G~~~~~la~~-g--------------~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~-- 180 (287)
T PRK12335 119 VKP-GKALDLGCGQGRNSLYLALL-G--------------FDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSAS-- 180 (287)
T ss_pred cCC-CCEEEeCCCCCHHHHHHHHC-C--------------CEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhccc--
Confidence 345 49999999999999999874 3 6999999997420 0 15666777776532
Q ss_pred HHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEE
Q 025715 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (249)
Q Consensus 109 ~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k 166 (249)
+ +++||+|++...+... +. +.....+..+.++|+|||.+++.
T Consensus 181 ------~-~~~fD~I~~~~vl~~l-----~~----~~~~~~l~~~~~~LkpgG~~l~v 222 (287)
T PRK12335 181 ------I-QEEYDFILSTVVLMFL-----NR----ERIPAIIKNMQEHTNPGGYNLIV 222 (287)
T ss_pred ------c-cCCccEEEEcchhhhC-----CH----HHHHHHHHHHHHhcCCCcEEEEE
Confidence 2 4689999998654221 11 11235678889999999997653
No 114
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=98.80 E-value=7.4e-08 Score=81.63 Aligned_cols=100 Identities=24% Similarity=0.253 Sum_probs=71.9
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC---------C---CCCceEeecCCCChhh
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------P---IEGVIQVQGDITNART 107 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~---------~---~~~v~~~~gDi~~~~~ 107 (249)
.++.+|||+|||+|.++..++...+ ...+++++|+++.. . ..++.++.+|+.+..
T Consensus 50 ~~~~~vldiG~G~G~~~~~l~~~~~------------~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~- 116 (239)
T PRK00216 50 RPGDKVLDLACGTGDLAIALAKAVG------------KTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALP- 116 (239)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHHcC------------CCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCC-
Confidence 3678999999999999999988764 24799999998732 0 135778888887643
Q ss_pred HHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecC
Q 025715 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRG 170 (249)
Q Consensus 108 ~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~ 170 (249)
+..++||+|++....... .+ ....+..+.++|+|||.+++..+..
T Consensus 117 -------~~~~~~D~I~~~~~l~~~----~~-------~~~~l~~~~~~L~~gG~li~~~~~~ 161 (239)
T PRK00216 117 -------FPDNSFDAVTIAFGLRNV----PD-------IDKALREMYRVLKPGGRLVILEFSK 161 (239)
T ss_pred -------CCCCCccEEEEecccccC----CC-------HHHHHHHHHHhccCCcEEEEEEecC
Confidence 234689999986532211 11 1246778889999999998865543
No 115
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.77 E-value=1.3e-08 Score=85.74 Aligned_cols=92 Identities=21% Similarity=0.327 Sum_probs=65.2
Q ss_pred ccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhh
Q 025715 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNART 107 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~ 107 (249)
+++|++|||+|||+|..+..+++..+ +.+.|++||+.+.. .+.+|.++.+|...-..
T Consensus 70 l~pg~~VLeIGtGsGY~aAlla~lvg------------~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~ 137 (209)
T PF01135_consen 70 LKPGDRVLEIGTGSGYQAALLAHLVG------------PVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWP 137 (209)
T ss_dssp C-TT-EEEEES-TTSHHHHHHHHHHS------------TTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTG
T ss_pred cCCCCEEEEecCCCcHHHHHHHHhcC------------ccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccc
Confidence 58999999999999999999999886 46789999998831 24588999999764221
Q ss_pred HHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEE
Q 025715 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKI 167 (249)
Q Consensus 108 ~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~ 167 (249)
....||.|++.++... .. ....+.|++||+||+-+
T Consensus 138 --------~~apfD~I~v~~a~~~-----ip------------~~l~~qL~~gGrLV~pi 172 (209)
T PF01135_consen 138 --------EEAPFDRIIVTAAVPE-----IP------------EALLEQLKPGGRLVAPI 172 (209)
T ss_dssp --------GG-SEEEEEESSBBSS-------------------HHHHHTEEEEEEEEEEE
T ss_pred --------cCCCcCEEEEeeccch-----HH------------HHHHHhcCCCcEEEEEE
Confidence 2357999999875321 11 12357899999999844
No 116
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=98.74 E-value=8.4e-08 Score=80.49 Aligned_cols=98 Identities=15% Similarity=0.175 Sum_probs=68.0
Q ss_pred cccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC------CCCCceEeecCCCChhhHHHH
Q 025715 38 IFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PIEGVIQVQGDITNARTAEVV 111 (249)
Q Consensus 38 ~~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~------~~~~v~~~~gDi~~~~~~~~i 111 (249)
.+.++.+|||+|||+|.++..+++..+ ...++|+|+++.. ..+++.+.++|+.++
T Consensus 40 ~~~~~~~VLDiGCG~G~~~~~L~~~~~-------------~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~~------ 100 (204)
T TIGR03587 40 RLPKIASILELGANIGMNLAALKRLLP-------------FKHIYGVEINEYAVEKAKAYLPNINIIQGSLFDP------ 100 (204)
T ss_pred hcCCCCcEEEEecCCCHHHHHHHHhCC-------------CCeEEEEECCHHHHHHHHhhCCCCcEEEeeccCC------
Confidence 345778999999999999999987653 4799999999842 145677888988762
Q ss_pred HHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEe
Q 025715 112 IRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (249)
Q Consensus 112 ~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~ 168 (249)
+.+++||+|++....... +.. ....++..+.+++ ++.+++..+
T Consensus 101 ---~~~~sfD~V~~~~vL~hl-----~p~----~~~~~l~el~r~~--~~~v~i~e~ 143 (204)
T TIGR03587 101 ---FKDNFFDLVLTKGVLIHI-----NPD----NLPTAYRELYRCS--NRYILIAEY 143 (204)
T ss_pred ---CCCCCEEEEEECChhhhC-----CHH----HHHHHHHHHHhhc--CcEEEEEEe
Confidence 346799999998754321 111 1234566666666 455555443
No 117
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=98.74 E-value=2.5e-08 Score=82.60 Aligned_cols=101 Identities=19% Similarity=0.217 Sum_probs=67.4
Q ss_pred hhcCcccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC--------CC--CceEeecCCC
Q 025715 34 EEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP--------IE--GVIQVQGDIT 103 (249)
Q Consensus 34 ~~~~~~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~--------~~--~v~~~~gDi~ 103 (249)
+..+.+++ .++||||||.|.-+.+++++ | ..|+|+|+++... -. .++....|+.
T Consensus 24 ~a~~~~~~-g~~LDlgcG~GRNalyLA~~-G--------------~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~ 87 (192)
T PF03848_consen 24 EAVPLLKP-GKALDLGCGEGRNALYLASQ-G--------------FDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLN 87 (192)
T ss_dssp HHCTTS-S-SEEEEES-TTSHHHHHHHHT-T---------------EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGC
T ss_pred HHHhhcCC-CcEEEcCCCCcHHHHHHHHC-C--------------CeEEEEECCHHHHHHHHHHHhhcCceeEEEEecch
Confidence 33455555 59999999999999999976 2 6999999998431 12 2667788887
Q ss_pred ChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEe
Q 025715 104 NARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (249)
Q Consensus 104 ~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~ 168 (249)
+.. ++ +.||+|+|...+... +. +....++......++|||.+++.++
T Consensus 88 ~~~--------~~-~~yD~I~st~v~~fL-----~~----~~~~~i~~~m~~~~~pGG~~li~~~ 134 (192)
T PF03848_consen 88 DFD--------FP-EEYDFIVSTVVFMFL-----QR----ELRPQIIENMKAATKPGGYNLIVTF 134 (192)
T ss_dssp CBS---------T-TTEEEEEEESSGGGS------G----GGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred hcc--------cc-CCcCEEEEEEEeccC-----CH----HHHHHHHHHHHhhcCCcEEEEEEEe
Confidence 753 23 579999987544321 11 1123456677889999999998655
No 118
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=98.73 E-value=2.2e-08 Score=84.82 Aligned_cols=95 Identities=22% Similarity=0.243 Sum_probs=64.4
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC--------CCCce--EeecCCCChhhHHH
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP--------IEGVI--QVQGDITNARTAEV 110 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~--------~~~v~--~~~gDi~~~~~~~~ 110 (249)
+|.+|||+|||=|.+++.+++. | ..|+|+|+++... ..++. +.+..+.+
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~-G--------------a~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~ed------ 117 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARL-G--------------ASVTGIDASEKPIEVAKLHALESGVNIDYRQATVED------ 117 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHC-C--------------CeeEEecCChHHHHHHHHhhhhccccccchhhhHHH------
Confidence 7899999999999999999864 3 7999999998431 12332 22222222
Q ss_pred HHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEec
Q 025715 111 VIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFR 169 (249)
Q Consensus 111 i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~ 169 (249)
+.. .+++||+|+|--.... ..++ ...+..+.+++||||.+++.+..
T Consensus 118 l~~--~~~~FDvV~cmEVlEH----v~dp-------~~~~~~c~~lvkP~G~lf~STin 163 (243)
T COG2227 118 LAS--AGGQFDVVTCMEVLEH----VPDP-------ESFLRACAKLVKPGGILFLSTIN 163 (243)
T ss_pred HHh--cCCCccEEEEhhHHHc----cCCH-------HHHHHHHHHHcCCCcEEEEeccc
Confidence 221 2379999999532211 1122 24678889999999999988763
No 119
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.72 E-value=6.7e-08 Score=86.39 Aligned_cols=91 Identities=25% Similarity=0.265 Sum_probs=65.9
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhhH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~~ 108 (249)
+++.+|||+|||+|.++..+++..+ ..+.|+++|+++.. ..+++.++++|.....
T Consensus 79 ~~g~~VLDIG~GtG~~a~~LA~~~~------------~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~-- 144 (322)
T PRK13943 79 DKGMRVLEIGGGTGYNAAVMSRVVG------------EKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGV-- 144 (322)
T ss_pred CCCCEEEEEeCCccHHHHHHHHhcC------------CCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcc--
Confidence 5789999999999999999998765 34689999999731 2356888889875421
Q ss_pred HHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEE
Q 025715 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKI 167 (249)
Q Consensus 109 ~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~ 167 (249)
....+||+|+++.+. .+ ......+.|+|||.+++.+
T Consensus 145 ------~~~~~fD~Ii~~~g~-----~~------------ip~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 145 ------PEFAPYDVIFVTVGV-----DE------------VPETWFTQLKEGGRVIVPI 180 (322)
T ss_pred ------cccCCccEEEECCch-----HH------------hHHHHHHhcCCCCEEEEEe
Confidence 122579999987431 11 1123467899999999854
No 120
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.71 E-value=4.3e-08 Score=92.10 Aligned_cols=97 Identities=20% Similarity=0.210 Sum_probs=71.1
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC---------CCCCceEeecCCCChhhHHHH
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------PIEGVIQVQGDITNARTAEVV 111 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~---------~~~~v~~~~gDi~~~~~~~~i 111 (249)
++.+|||+|||+|.++..++++. .+|+|+|+++.. ..++++++++|+.+...
T Consensus 37 ~~~~vLDlGcG~G~~~~~la~~~---------------~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~---- 97 (475)
T PLN02336 37 EGKSVLELGAGIGRFTGELAKKA---------------GQVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDL---- 97 (475)
T ss_pred CCCEEEEeCCCcCHHHHHHHhhC---------------CEEEEEeCCHHHHHHHHHHhccCCceEEEEeccccccc----
Confidence 56799999999999999998763 589999998732 13467888999864321
Q ss_pred HHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEE
Q 025715 112 IRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKI 167 (249)
Q Consensus 112 ~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~ 167 (249)
.++.++||+|+++.+..... +. ....++..+.++|||||.++++.
T Consensus 98 --~~~~~~fD~I~~~~~l~~l~----~~-----~~~~~l~~~~r~Lk~gG~l~~~d 142 (475)
T PLN02336 98 --NISDGSVDLIFSNWLLMYLS----DK-----EVENLAERMVKWLKVGGYIFFRE 142 (475)
T ss_pred --CCCCCCEEEEehhhhHHhCC----HH-----HHHHHHHHHHHhcCCCeEEEEEe
Confidence 13457899999986543211 11 12457888999999999999863
No 121
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.70 E-value=6.5e-08 Score=83.26 Aligned_cols=118 Identities=14% Similarity=0.128 Sum_probs=77.4
Q ss_pred ccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CC-CCceEeecCCCChh
Q 025715 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNAR 106 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~-~~v~~~~gDi~~~~ 106 (249)
++||.+||+.|+|+|++|.++++.++ +.|+|+..|..+.. .+ .+|++.++|+.+.-
T Consensus 38 i~pG~~VlEaGtGSG~lt~~l~r~v~------------p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g 105 (247)
T PF08704_consen 38 IRPGSRVLEAGTGSGSLTHALARAVG------------PTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEG 105 (247)
T ss_dssp --TT-EEEEE--TTSHHHHHHHHHHT------------TTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG-
T ss_pred CCCCCEEEEecCCcHHHHHHHHHHhC------------CCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceeccc
Confidence 38999999999999999999999887 67999999998632 23 46888899997532
Q ss_pred hHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhc-cCCCEEEEEEecCCCHHHHHHHHhcC-C
Q 025715 107 TAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVL-KEGGKFIAKIFRGKDTSLLYCQLKLF-F 184 (249)
Q Consensus 107 ~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~L-k~gG~lv~k~~~~~~~~~l~~~l~~~-f 184 (249)
. ...+ +..+|.|+.|+.-.+ .++..+.+.| ++||.+++-.-.-+........|+.. |
T Consensus 106 ~----~~~~-~~~~DavfLDlp~Pw----------------~~i~~~~~~L~~~gG~i~~fsP~ieQv~~~~~~L~~~gf 164 (247)
T PF08704_consen 106 F----DEEL-ESDFDAVFLDLPDPW----------------EAIPHAKRALKKPGGRICCFSPCIEQVQKTVEALREHGF 164 (247)
T ss_dssp -----STT--TTSEEEEEEESSSGG----------------GGHHHHHHHE-EEEEEEEEEESSHHHHHHHHHHHHHTTE
T ss_pred c----cccc-cCcccEEEEeCCCHH----------------HHHHHHHHHHhcCCceEEEECCCHHHHHHHHHHHHHCCC
Confidence 1 0011 257999999985332 2567788999 89999987432223344444555543 6
Q ss_pred CeeEE
Q 025715 185 PVVTF 189 (249)
Q Consensus 185 ~~v~~ 189 (249)
..+..
T Consensus 165 ~~i~~ 169 (247)
T PF08704_consen 165 TDIET 169 (247)
T ss_dssp EEEEE
T ss_pred eeeEE
Confidence 55443
No 122
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=98.69 E-value=8.3e-08 Score=78.97 Aligned_cols=69 Identities=23% Similarity=0.302 Sum_probs=56.1
Q ss_pred cccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC----CCCceEeecCCCChhhHHHHHH
Q 025715 38 IFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----IEGVIQVQGDITNARTAEVVIR 113 (249)
Q Consensus 38 ~~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~----~~~v~~~~gDi~~~~~~~~i~~ 113 (249)
+++||.+|||||||.|....++.+.. +...+|+|+++... -.|+.++++|+.+- ..
T Consensus 10 ~I~pgsrVLDLGCGdG~LL~~L~~~k--------------~v~g~GvEid~~~v~~cv~rGv~Viq~Dld~g------L~ 69 (193)
T PF07021_consen 10 WIEPGSRVLDLGCGDGELLAYLKDEK--------------QVDGYGVEIDPDNVAACVARGVSVIQGDLDEG------LA 69 (193)
T ss_pred HcCCCCEEEecCCCchHHHHHHHHhc--------------CCeEEEEecCHHHHHHHHHcCCCEEECCHHHh------Hh
Confidence 46899999999999999999888753 47899999998542 26888999998652 23
Q ss_pred hcCCCcccEEEeC
Q 025715 114 HFDGCKADLVVCD 126 (249)
Q Consensus 114 ~~~~~~~DlVlsD 126 (249)
.+++++||.|+..
T Consensus 70 ~f~d~sFD~VIls 82 (193)
T PF07021_consen 70 DFPDQSFDYVILS 82 (193)
T ss_pred hCCCCCccEEehH
Confidence 5788999999975
No 123
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.69 E-value=3.9e-08 Score=86.25 Aligned_cols=149 Identities=19% Similarity=0.268 Sum_probs=98.7
Q ss_pred CCCChhHHHHHHhccchhhhhhHHhhhhhcCcc---------cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCC
Q 025715 7 DKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIF---------EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGD 77 (249)
Q Consensus 7 ~~~d~~~~~a~~~~~~~ra~~KL~ei~~~~~~~---------~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~ 77 (249)
..+++| +...+.|+..|..-++..+-.--+++ +++..++|||||-||-..-+-+. +
T Consensus 75 ~Va~HY-N~~~e~g~e~Rq~S~Ii~lRnfNNwIKs~LI~~y~~~~~~~~~LgCGKGGDLlKw~kA-g------------- 139 (389)
T KOG1975|consen 75 EVAEHY-NERTEVGREKRQRSPIIFLRNFNNWIKSVLINLYTKRGDDVLDLGCGKGGDLLKWDKA-G------------- 139 (389)
T ss_pred HHHHHH-HHHHHHhHhhhccCceeehhhhhHHHHHHHHHHHhccccccceeccCCcccHhHhhhh-c-------------
Confidence 345664 77888888777776666554433432 68999999999999965544322 1
Q ss_pred CCeEEEecCCCCCC------------C-C----CceEeecCCCChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHH
Q 025715 78 LPLIVAIDLQPMAP------------I-E----GVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEF 140 (249)
Q Consensus 78 ~~~vvavDi~~~~~------------~-~----~v~~~~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~ 140 (249)
-+.++++||..... . + .+.++.||.+.......+ + +++.+||+|-|--++.+. +...
T Consensus 140 I~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~-e-~~dp~fDivScQF~~HYa----Fete 213 (389)
T KOG1975|consen 140 IGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLL-E-FKDPRFDIVSCQFAFHYA----FETE 213 (389)
T ss_pred ccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhc-c-CCCCCcceeeeeeeEeee----eccH
Confidence 36899999987531 1 1 367899999875432221 1 244569999987765543 2222
Q ss_pred HHHHHHHHHHHHHHHhccCCCEEEEEEecCCCHHHHHHHHhc
Q 025715 141 VQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKL 182 (249)
Q Consensus 141 ~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~~~l~~~l~~ 182 (249)
.+ .+.+|..+.++|+|||.|+-++ ++...|++.|+.
T Consensus 214 e~---ar~~l~Nva~~LkpGG~FIgTi---Pdsd~Ii~rlr~ 249 (389)
T KOG1975|consen 214 ES---ARIALRNVAKCLKPGGVFIGTI---PDSDVIIKRLRA 249 (389)
T ss_pred HH---HHHHHHHHHhhcCCCcEEEEec---CcHHHHHHHHHh
Confidence 22 3567889999999999999865 555666666654
No 124
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.68 E-value=1.1e-07 Score=79.82 Aligned_cols=89 Identities=18% Similarity=0.170 Sum_probs=64.3
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhhH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~~ 108 (249)
+++.+|||+|||+|.++..+++.. ++|+++|+++.. .+.++++..+|..+..
T Consensus 77 ~~~~~VLeiG~GsG~~t~~la~~~---------------~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-- 139 (212)
T PRK00312 77 KPGDRVLEIGTGSGYQAAVLAHLV---------------RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGW-- 139 (212)
T ss_pred CCCCEEEEECCCccHHHHHHHHHh---------------CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCC--
Confidence 578999999999999998777653 489999998732 2346788888875421
Q ss_pred HHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEe
Q 025715 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (249)
Q Consensus 109 ~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~ 168 (249)
...++||+|+++..+.. ......+.|+|||.+++-+.
T Consensus 140 ------~~~~~fD~I~~~~~~~~-----------------~~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 140 ------PAYAPFDRILVTAAAPE-----------------IPRALLEQLKEGGILVAPVG 176 (212)
T ss_pred ------CcCCCcCEEEEccCchh-----------------hhHHHHHhcCCCcEEEEEEc
Confidence 12368999999864311 11234679999999998654
No 125
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=98.67 E-value=5.6e-08 Score=85.35 Aligned_cols=117 Identities=20% Similarity=0.207 Sum_probs=73.1
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-------------CCCCceEeecCCCChhh
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-------------PIEGVIQVQGDITNART 107 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-------------~~~~v~~~~gDi~~~~~ 107 (249)
.|.+||||.|-+|+|+.+++.. | ..+|+.||.+... ....++++++|+.+.-
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~g-G-------------A~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l- 187 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAG-G-------------AKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFL- 187 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHT-T-------------ESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHH-
T ss_pred CCCceEEecCCCCHHHHHHHHC-C-------------CCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHH-
Confidence 5799999999999999988752 2 3589999998732 1246788999987632
Q ss_pred HHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCC-CHHHHHHHHh
Q 025715 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGK-DTSLLYCQLK 181 (249)
Q Consensus 108 ~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~-~~~~l~~~l~ 181 (249)
+.+. ..++||+|++|++.-..+.+ +. .+-+..++..+.++|+|||.|++..+.+. ....+...+.
T Consensus 188 -~~~~---~~~~fD~IIlDPPsF~k~~~--~~---~~~y~~L~~~a~~ll~~gG~l~~~scs~~i~~~~l~~~~~ 253 (286)
T PF10672_consen 188 -KRLK---KGGRFDLIILDPPSFAKSKF--DL---ERDYKKLLRRAMKLLKPGGLLLTCSCSHHISPDFLLEAVA 253 (286)
T ss_dssp -HHHH---HTT-EEEEEE--SSEESSTC--EH---HHHHHHHHHHHHHTEEEEEEEEEEE--TTS-HHHHHHHHH
T ss_pred -HHHh---cCCCCCEEEECCCCCCCCHH--HH---HHHHHHHHHHHHHhcCCCCEEEEEcCCcccCHHHHHHHHH
Confidence 2232 23689999999853333322 21 23355678889999999999987666433 3344444443
No 126
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=98.65 E-value=1e-07 Score=83.11 Aligned_cols=101 Identities=21% Similarity=0.164 Sum_probs=66.9
Q ss_pred CCCeEEEEcCCCCh----HHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC------CC------------------
Q 025715 41 GVKRVVDLCAAPGS----WSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PI------------------ 92 (249)
Q Consensus 41 ~g~~vLDLG~gpG~----~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~------~~------------------ 92 (249)
++.+|+|+|||+|- ++..+++..+... ....+|+|+|+++.. ..
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~--------~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf 170 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAR--------EPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYF 170 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcC--------CCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhE
Confidence 45799999999995 4545555443100 024689999999831 01
Q ss_pred --------------CCceEeecCCCChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhcc
Q 025715 93 --------------EGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLK 158 (249)
Q Consensus 93 --------------~~v~~~~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk 158 (249)
.+|+|.++|+.+.+ ...++||+|+|...... .+. .....++....+.|+
T Consensus 171 ~~~~~~~~v~~~ir~~V~F~~~dl~~~~--------~~~~~fD~I~crnvl~y-----f~~----~~~~~~l~~l~~~L~ 233 (264)
T smart00138 171 SRVEDKYRVKPELKERVRFAKHNLLAES--------PPLGDFDLIFCRNVLIY-----FDE----PTQRKLLNRFAEALK 233 (264)
T ss_pred EeCCCeEEEChHHhCcCEEeeccCCCCC--------CccCCCCEEEechhHHh-----CCH----HHHHHHHHHHHHHhC
Confidence 14778888888753 23468999999643321 121 113457888899999
Q ss_pred CCCEEEEE
Q 025715 159 EGGKFIAK 166 (249)
Q Consensus 159 ~gG~lv~k 166 (249)
|||.|++-
T Consensus 234 pGG~L~lg 241 (264)
T smart00138 234 PGGYLFLG 241 (264)
T ss_pred CCeEEEEE
Confidence 99999984
No 127
>PLN02672 methionine S-methyltransferase
Probab=98.64 E-value=1.6e-07 Score=94.97 Aligned_cols=130 Identities=16% Similarity=0.130 Sum_probs=84.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC-----------C----------------CC
Q 025715 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP-----------I----------------EG 94 (249)
Q Consensus 42 g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~-----------~----------------~~ 94 (249)
+.+|||||||+|..+..++++.+ ..+|+|+|+++.+. + .+
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~-------------~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~r 185 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWL-------------PSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDR 185 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCC-------------CCEEEEEECCHHHHHHHHHHHHHcCccccccccccccccccccc
Confidence 46899999999999999998764 47999999998420 1 25
Q ss_pred ceEeecCCCChhhHHHHHHhcCCCcccEEEeCCCCCCCCC--------CCcC-------------------HHHHHHHHH
Q 025715 95 VIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGL--------HDMD-------------------EFVQSQLIL 147 (249)
Q Consensus 95 v~~~~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~--------~~~~-------------------~~~~~~l~~ 147 (249)
++++++|+.+.- .. ...+||+|+||++--..+. ...+ ...-+.+++
T Consensus 186 V~f~~sDl~~~~------~~-~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr 258 (1082)
T PLN02672 186 VEFYESDLLGYC------RD-NNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIA 258 (1082)
T ss_pred EEEEECchhhhc------cc-cCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHH
Confidence 788999987531 00 1136999999974211110 0000 012345678
Q ss_pred HHHHHHHHhccCCCEEEEEEecCCCHHHHH-HHHhc-CCCeeEEecC
Q 025715 148 AGLTVVTHVLKEGGKFIAKIFRGKDTSLLY-CQLKL-FFPVVTFAKP 192 (249)
Q Consensus 148 ~~l~~a~~~Lk~gG~lv~k~~~~~~~~~l~-~~l~~-~f~~v~~~kP 192 (249)
.++..+.++|+|||.+++.+-. ..-..+. .++++ -|+.+.+++-
T Consensus 259 ~i~~~a~~~L~pgG~l~lEiG~-~q~~~v~~~l~~~~gf~~~~~~~~ 304 (1082)
T PLN02672 259 RAVEEGISVIKPMGIMIFNMGG-RPGQAVCERLFERRGFRITKLWQT 304 (1082)
T ss_pred HHHHHHHHhccCCCEEEEEECc-cHHHHHHHHHHHHCCCCeeEEeee
Confidence 8999999999999999986642 2222333 24443 3766666543
No 128
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.60 E-value=3e-07 Score=66.10 Aligned_cols=92 Identities=21% Similarity=0.278 Sum_probs=66.6
Q ss_pred eEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhhHHHHH
Q 025715 44 RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTAEVVI 112 (249)
Q Consensus 44 ~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~~~~i~ 112 (249)
+++|+|||+|.++..+++ . ...+++++|+++.. ....++++.+|+.+...
T Consensus 1 ~ildig~G~G~~~~~~~~-~-------------~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 61 (107)
T cd02440 1 RVLDLGCGTGALALALAS-G-------------PGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPP----- 61 (107)
T ss_pred CeEEEcCCccHHHHHHhc-C-------------CCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhcc-----
Confidence 589999999999998887 2 24799999998732 12456778888877532
Q ss_pred HhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEE
Q 025715 113 RHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (249)
Q Consensus 113 ~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k 166 (249)
....++|+|+++...... .......+..+.+.|++||.+++.
T Consensus 62 --~~~~~~d~i~~~~~~~~~----------~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 62 --EADESFDVIISDPPLHHL----------VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred --ccCCceEEEEEccceeeh----------hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 134689999998754321 112345677888899999999874
No 129
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=98.60 E-value=1.7e-07 Score=76.17 Aligned_cols=125 Identities=23% Similarity=0.254 Sum_probs=79.5
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCC-ceEeecCCCChhh
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEG-VIQVQGDITNART 107 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~-v~~~~gDi~~~~~ 107 (249)
+...+|||||||.|.+..-|++.-- .+..+|||.++.+ ..++ ++|.+.||+++.
T Consensus 66 ~~A~~VlDLGtGNG~~L~~L~~egf-------------~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~- 131 (227)
T KOG1271|consen 66 KQADRVLDLGTGNGHLLFQLAKEGF-------------QSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPD- 131 (227)
T ss_pred ccccceeeccCCchHHHHHHHHhcC-------------CCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCc-
Confidence 3445999999999999988887532 3568999999843 1344 889999999974
Q ss_pred HHHHHHhcCCCcccEEEeCCCCCCCCCC-CcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCCCHHHHHHHHhcC-CC
Q 025715 108 AEVVIRHFDGCKADLVVCDGAPDVTGLH-DMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLF-FP 185 (249)
Q Consensus 108 ~~~i~~~~~~~~~DlVlsD~~~~~~g~~-~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~~~l~~~l~~~-f~ 185 (249)
+..++||+|+--|..+..+.. +....+ ..+ -+....++|+|||.|||..+ .....++...+... |+
T Consensus 132 -------~~~~qfdlvlDKGT~DAisLs~d~~~~r-~~~---Y~d~v~~ll~~~gifvItSC-N~T~dELv~~f~~~~f~ 199 (227)
T KOG1271|consen 132 -------FLSGQFDLVLDKGTLDAISLSPDGPVGR-LVV---YLDSVEKLLSPGGIFVITSC-NFTKDELVEEFENFNFE 199 (227)
T ss_pred -------ccccceeEEeecCceeeeecCCCCcccc-eee---ehhhHhhccCCCcEEEEEec-CccHHHHHHHHhcCCeE
Confidence 245789999876644322211 000000 011 13455689999999999654 34555666655543 55
Q ss_pred eeEEe
Q 025715 186 VVTFA 190 (249)
Q Consensus 186 ~v~~~ 190 (249)
.+..+
T Consensus 200 ~~~tv 204 (227)
T KOG1271|consen 200 YLSTV 204 (227)
T ss_pred EEEee
Confidence 44443
No 130
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.60 E-value=4.5e-07 Score=76.42 Aligned_cols=121 Identities=21% Similarity=0.291 Sum_probs=85.0
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-------CC------CCceEeecCCCChh
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-------PI------EGVIQVQGDITNAR 106 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-------~~------~~v~~~~gDi~~~~ 106 (249)
+.|.+|||.|.|=|..+..+.++. ..+|+.|+.+|.- +. .+++.+.||+.+
T Consensus 133 ~~G~rVLDtC~GLGYtAi~a~~rG--------------A~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e-- 196 (287)
T COG2521 133 KRGERVLDTCTGLGYTAIEALERG--------------AIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYE-- 196 (287)
T ss_pred ccCCEeeeeccCccHHHHHHHHcC--------------CcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHH--
Confidence 358999999999999998888763 2489999888742 11 257888999865
Q ss_pred hHHHHHHhcCCCcccEEEeCCC-CCCCCCCCcCHHHHHHHH-HHHHHHHHHhccCCCEEEEEEecCC------C-HHHHH
Q 025715 107 TAEVVIRHFDGCKADLVVCDGA-PDVTGLHDMDEFVQSQLI-LAGLTVVTHVLKEGGKFIAKIFRGK------D-TSLLY 177 (249)
Q Consensus 107 ~~~~i~~~~~~~~~DlVlsD~~-~~~~g~~~~~~~~~~~l~-~~~l~~a~~~Lk~gG~lv~k~~~~~------~-~~~l~ 177 (249)
+.+.|.+.+||+|+.|++ ++..| +|+ +....+.+++|||||.+.--+-.+. + ...+.
T Consensus 197 ----~V~~~~D~sfDaIiHDPPRfS~Ag----------eLYseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~~~gVa 262 (287)
T COG2521 197 ----VVKDFDDESFDAIIHDPPRFSLAG----------ELYSEEFYRELYRILKRGGRLFHYVGNPGKRYRGLDLPKGVA 262 (287)
T ss_pred ----HHhcCCccccceEeeCCCccchhh----------hHhHHHHHHHHHHHcCcCCcEEEEeCCCCcccccCChhHHHH
Confidence 345688899999999984 33222 221 4466778999999999885444332 2 33566
Q ss_pred HHHhcC-CCeeEEe
Q 025715 178 CQLKLF-FPVVTFA 190 (249)
Q Consensus 178 ~~l~~~-f~~v~~~ 190 (249)
..|++. |..|...
T Consensus 263 ~RLr~vGF~~v~~~ 276 (287)
T COG2521 263 ERLRRVGFEVVKKV 276 (287)
T ss_pred HHHHhcCceeeeee
Confidence 666664 8776654
No 131
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=98.58 E-value=8.9e-08 Score=81.91 Aligned_cols=90 Identities=21% Similarity=0.286 Sum_probs=61.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------C-CC-----CceEeecCCCC
Q 025715 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------P-IE-----GVIQVQGDITN 104 (249)
Q Consensus 42 g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~-~~-----~v~~~~gDi~~ 104 (249)
|++|||+|||.|-.|+.|++. + ..|+|+|+++.. + .. .+.+...|+.+
T Consensus 90 g~~ilDvGCGgGLLSepLArl-g--------------a~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~ 154 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARL-G--------------AQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEG 154 (282)
T ss_pred CceEEEeccCccccchhhHhh-C--------------CeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhh
Confidence 488999999999999999964 3 799999998732 1 11 23344444433
Q ss_pred hhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEe
Q 025715 105 ARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (249)
Q Consensus 105 ~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~ 168 (249)
+. +.||.|+|-.... | .......+....++|||||.+++.+.
T Consensus 155 ----------~~-~~fDaVvcsevle--------H---V~dp~~~l~~l~~~lkP~G~lfitti 196 (282)
T KOG1270|consen 155 ----------LT-GKFDAVVCSEVLE--------H---VKDPQEFLNCLSALLKPNGRLFITTI 196 (282)
T ss_pred ----------cc-cccceeeeHHHHH--------H---HhCHHHHHHHHHHHhCCCCceEeeeh
Confidence 22 4699999854211 1 11123467788899999999999765
No 132
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=98.58 E-value=2.2e-07 Score=78.45 Aligned_cols=98 Identities=14% Similarity=0.064 Sum_probs=68.5
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC--------CC---------------CCce
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--------PI---------------EGVI 96 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~--------~~---------------~~v~ 96 (249)
.++.+|||+|||.|..+.+++++ | ..|+|||+++.+ .+ .+++
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~-G--------------~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 97 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQ-G--------------HRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIE 97 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhC-C--------------CeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceE
Confidence 46779999999999999999875 3 689999999842 01 2477
Q ss_pred EeecCCCChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEe
Q 025715 97 QVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (249)
Q Consensus 97 ~~~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~ 168 (249)
++++|+.+.+. ...+.||.|+--+.+.. ... ..-...+....++|||||.+++.++
T Consensus 98 ~~~~D~~~~~~-------~~~~~fD~i~D~~~~~~-----l~~----~~R~~~~~~l~~lLkpgG~~ll~~~ 153 (213)
T TIGR03840 98 IFCGDFFALTA-------ADLGPVDAVYDRAALIA-----LPE----EMRQRYAAHLLALLPPGARQLLITL 153 (213)
T ss_pred EEEccCCCCCc-------ccCCCcCEEEechhhcc-----CCH----HHHHHHHHHHHHHcCCCCeEEEEEE
Confidence 78999987542 01246899987553321 111 1123467788999999998776555
No 133
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.58 E-value=7.5e-07 Score=79.07 Aligned_cols=105 Identities=15% Similarity=0.092 Sum_probs=66.5
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC----------CCCC--ceEeecCCCChhh
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------PIEG--VIQVQGDITNART 107 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~----------~~~~--v~~~~gDi~~~~~ 107 (249)
.++.+|||||||+|.++..+++.+. ....|+++|+++.. ..++ +..+++|+.+...
T Consensus 62 ~~~~~iLELGcGtG~~t~~Ll~~l~------------~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~ 129 (301)
T TIGR03438 62 GAGCELVELGSGSSRKTRLLLDALR------------QPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLA 129 (301)
T ss_pred CCCCeEEecCCCcchhHHHHHHhhc------------cCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhh
Confidence 5678999999999999999998763 23689999999832 1244 4567999987421
Q ss_pred HHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEe
Q 025715 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (249)
Q Consensus 108 ~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~ 168 (249)
+..........+++++... .+.+... ....+..+.+.|+|||.|++-+-
T Consensus 130 ---~~~~~~~~~~~~~~~gs~~-----~~~~~~e----~~~~L~~i~~~L~pgG~~lig~d 178 (301)
T TIGR03438 130 ---LPPEPAAGRRLGFFPGSTI-----GNFTPEE----AVAFLRRIRQLLGPGGGLLIGVD 178 (301)
T ss_pred ---hhcccccCCeEEEEecccc-----cCCCHHH----HHHHHHHHHHhcCCCCEEEEecc
Confidence 1111111122233333221 2233222 23567888899999999998553
No 134
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.58 E-value=2.9e-07 Score=78.85 Aligned_cols=98 Identities=16% Similarity=0.134 Sum_probs=70.1
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CC-CCceEeecCCCChhh
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNART 107 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~-~~v~~~~gDi~~~~~ 107 (249)
.++.+|||+|||+|.-+..++..++ +.++|+++|+++.. .+ .+++++.||+.+.
T Consensus 67 ~~~~~vLEiGt~~G~s~l~la~~~~------------~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~-- 132 (234)
T PLN02781 67 MNAKNTLEIGVFTGYSLLTTALALP------------EDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSA-- 132 (234)
T ss_pred hCCCEEEEecCcccHHHHHHHHhCC------------CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHH--
Confidence 4678999999999998888887765 46899999999842 12 3578889998652
Q ss_pred HHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEE
Q 025715 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIA 165 (249)
Q Consensus 108 ~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~ 165 (249)
+..+......++||+|+.|+.. .. +...+..+.++|+|||.+++
T Consensus 133 L~~l~~~~~~~~fD~VfiDa~k--------~~------y~~~~~~~~~ll~~GG~ii~ 176 (234)
T PLN02781 133 LDQLLNNDPKPEFDFAFVDADK--------PN------YVHFHEQLLKLVKVGGIIAF 176 (234)
T ss_pred HHHHHhCCCCCCCCEEEECCCH--------HH------HHHHHHHHHHhcCCCeEEEE
Confidence 2223221123689999999631 11 12356778899999999886
No 135
>PLN02366 spermidine synthase
Probab=98.56 E-value=5e-07 Score=80.38 Aligned_cols=123 Identities=17% Similarity=0.152 Sum_probs=81.3
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC---------C------CCCceEeecCCCC
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------P------IEGVIQVQGDITN 104 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~---------~------~~~v~~~~gDi~~ 104 (249)
.+..+||++|+|.|+.+..+++. + ...+|+.||+++.. . -++++++.+|...
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~-~------------~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~ 156 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARH-S------------SVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVE 156 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC-C------------CCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHH
Confidence 45689999999999999888765 3 23689999998731 0 2468888888654
Q ss_pred hhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHH-HHHHHHHHHHhccCCCEEEEEEec----CCCHHHHHHH
Q 025715 105 ARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQL-ILAGLTVVTHVLKEGGKFIAKIFR----GKDTSLLYCQ 179 (249)
Q Consensus 105 ~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l-~~~~l~~a~~~Lk~gG~lv~k~~~----~~~~~~l~~~ 179 (249)
. + +...+++||+|++|..... +. . ..| ....++.+.+.|+|||.+++..-. ......+...
T Consensus 157 ~-----l-~~~~~~~yDvIi~D~~dp~-~~---~----~~L~t~ef~~~~~~~L~pgGvlv~q~~s~~~~~~~~~~i~~t 222 (308)
T PLN02366 157 F-----L-KNAPEGTYDAIIVDSSDPV-GP---A----QELFEKPFFESVARALRPGGVVCTQAESMWLHMDLIEDLIAI 222 (308)
T ss_pred H-----H-hhccCCCCCEEEEcCCCCC-Cc---h----hhhhHHHHHHHHHHhcCCCcEEEECcCCcccchHHHHHHHHH
Confidence 2 1 1223468999999975322 11 1 112 245678889999999999874322 2224456667
Q ss_pred HhcCC-CeeEE
Q 025715 180 LKLFF-PVVTF 189 (249)
Q Consensus 180 l~~~f-~~v~~ 189 (249)
++..| ..+..
T Consensus 223 l~~~F~~~v~~ 233 (308)
T PLN02366 223 CRETFKGSVNY 233 (308)
T ss_pred HHHHCCCceeE
Confidence 77778 45544
No 136
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.54 E-value=3.6e-07 Score=74.15 Aligned_cols=92 Identities=12% Similarity=0.197 Sum_probs=63.4
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC---------CCCCceEeecCCCChhhHHH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------PIEGVIQVQGDITNARTAEV 110 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~---------~~~~v~~~~gDi~~~~~~~~ 110 (249)
.++.+|||+|||+|.++..++++ . .+|+++|+++.. ...+++++++|+.+..
T Consensus 12 ~~~~~vLEiG~G~G~lt~~l~~~-~--------------~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~---- 72 (169)
T smart00650 12 RPGDTVLEIGPGKGALTEELLER-A--------------ARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFD---- 72 (169)
T ss_pred CCcCEEEEECCCccHHHHHHHhc-C--------------CeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCC----
Confidence 46789999999999999999876 3 689999999732 1246888999997753
Q ss_pred HHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEE
Q 025715 111 VIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (249)
Q Consensus 111 i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k 166 (249)
+.+..+|.|++|...+. . .+++...+.. ..+.++|.+++.
T Consensus 73 ----~~~~~~d~vi~n~Py~~------~----~~~i~~~l~~--~~~~~~~~l~~q 112 (169)
T smart00650 73 ----LPKLQPYKVVGNLPYNI------S----TPILFKLLEE--PPAFRDAVLMVQ 112 (169)
T ss_pred ----ccccCCCEEEECCCccc------H----HHHHHHHHhc--CCCcceEEEEEE
Confidence 23346999999975432 1 1222233332 224577887764
No 137
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=98.54 E-value=2.7e-07 Score=81.91 Aligned_cols=98 Identities=16% Similarity=0.216 Sum_probs=69.0
Q ss_pred ccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC----------CC-CCceEeecCCCChhh
Q 025715 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------PI-EGVIQVQGDITNART 107 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~----------~~-~~v~~~~gDi~~~~~ 107 (249)
++++.+|||+|||+|.++..++++.+ ..+++++|+.++. .+ .+++++.+|+.+.+
T Consensus 147 ~~~~~~vlDiG~G~G~~~~~~~~~~p-------------~~~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~- 212 (306)
T TIGR02716 147 LDGVKKMIDVGGGIGDISAAMLKHFP-------------ELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKES- 212 (306)
T ss_pred CCCCCEEEEeCCchhHHHHHHHHHCC-------------CCEEEEEecHHHHHHHHHHHHhCCccceEEEEecCccCCC-
Confidence 35778999999999999999998874 5789999974321 12 35788999987532
Q ss_pred HHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEe
Q 025715 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (249)
Q Consensus 108 ~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~ 168 (249)
++ .+|+|+...... +.+.. ....+++.+.+.|+|||++++..+
T Consensus 213 -------~~--~~D~v~~~~~lh-----~~~~~----~~~~il~~~~~~L~pgG~l~i~d~ 255 (306)
T TIGR02716 213 -------YP--EADAVLFCRILY-----SANEQ----LSTIMCKKAFDAMRSGGRLLILDM 255 (306)
T ss_pred -------CC--CCCEEEeEhhhh-----cCChH----HHHHHHHHHHHhcCCCCEEEEEEe
Confidence 22 369987543221 12211 124578899999999999998644
No 138
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=98.53 E-value=1.4e-06 Score=75.06 Aligned_cols=141 Identities=17% Similarity=0.147 Sum_probs=86.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC-----------CC-CceEe----ecCCCCh
Q 025715 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP-----------IE-GVIQV----QGDITNA 105 (249)
Q Consensus 42 g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~-----------~~-~v~~~----~gDi~~~ 105 (249)
+..+||+|||+|+.+..+++.++ .+.|+|+|.++.+. +. ++..+ ++|..++
T Consensus 149 ~~~ildlgtGSGaIslsll~~L~-------------~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~ 215 (328)
T KOG2904|consen 149 HTHILDLGTGSGAISLSLLHGLP-------------QCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDE 215 (328)
T ss_pred cceEEEecCCccHHHHHHHhcCC-------------CceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccc
Confidence 45799999999999999999885 58999999998531 12 23333 4454443
Q ss_pred hhHHHHHHhcCCCcccEEEeCCCCCCCC-CCC-------cCHHH-------HHHHHHHHHHHHHHhccCCCEEEEEEecC
Q 025715 106 RTAEVVIRHFDGCKADLVVCDGAPDVTG-LHD-------MDEFV-------QSQLILAGLTVVTHVLKEGGKFIAKIFRG 170 (249)
Q Consensus 106 ~~~~~i~~~~~~~~~DlVlsD~~~~~~g-~~~-------~~~~~-------~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~ 170 (249)
.. +..++.|+++||++.-... .+. .+... -.+.+...+..|.+.|+|||.+.+.+-.-
T Consensus 216 ~~-------l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~~~ 288 (328)
T KOG2904|consen 216 HP-------LLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELVER 288 (328)
T ss_pred cc-------cccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEeccc
Confidence 21 3457899999998421111 100 11111 13345667889999999999999876521
Q ss_pred CCHHHHH-----HHHhcCCCeeEEecCCCCCCCCceEEEEE
Q 025715 171 KDTSLLY-----CQLKLFFPVVTFAKPKSSRNSSIEAFAVC 206 (249)
Q Consensus 171 ~~~~~l~-----~~l~~~f~~v~~~kP~~sr~~s~E~y~v~ 206 (249)
.....+. .....++..+.++...+.|+ ++++.
T Consensus 289 ~~~~~lv~~~m~s~~~d~~~~~~v~~Df~~~~----Rfv~i 325 (328)
T KOG2904|consen 289 KEHSYLVRIWMISLKDDSNGKAAVVSDFAGRP----RFVII 325 (328)
T ss_pred ccCcHHHHHHHHhchhhccchhheeecccCCc----ceEEE
Confidence 2111111 12233466677766555553 55554
No 139
>PRK06202 hypothetical protein; Provisional
Probab=98.52 E-value=9.2e-07 Score=75.35 Aligned_cols=102 Identities=18% Similarity=0.110 Sum_probs=64.7
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC--------CCCCceEeecCCCChhhHHHH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--------PIEGVIQVQGDITNARTAEVV 111 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~--------~~~~v~~~~gDi~~~~~~~~i 111 (249)
.++.+|||+|||+|.++..+++..... +...+|+|+|+++.. ...++++..+|....+
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~---------g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~----- 124 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRD---------GLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELV----- 124 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhC---------CCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEeccccc-----
Confidence 466799999999999999888754210 024599999999842 1235556555544322
Q ss_pred HHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEec
Q 025715 112 IRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFR 169 (249)
Q Consensus 112 ~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~ 169 (249)
..+++||+|+++...... +... ...++..+.++++ |.+++..+.
T Consensus 125 ---~~~~~fD~V~~~~~lhh~-----~d~~----~~~~l~~~~r~~~--~~~~i~dl~ 168 (232)
T PRK06202 125 ---AEGERFDVVTSNHFLHHL-----DDAE----VVRLLADSAALAR--RLVLHNDLI 168 (232)
T ss_pred ---ccCCCccEEEECCeeecC-----ChHH----HHHHHHHHHHhcC--eeEEEeccc
Confidence 135789999998754332 2111 2356777888887 445544443
No 140
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.51 E-value=2.5e-06 Score=75.38 Aligned_cols=81 Identities=22% Similarity=0.240 Sum_probs=58.9
Q ss_pred HhhhhhcCcccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC---------CCCCceEeec
Q 025715 30 LQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------PIEGVIQVQG 100 (249)
Q Consensus 30 ~ei~~~~~~~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~---------~~~~v~~~~g 100 (249)
.|+.+.+. .++|..+||++||.|+.|.++++.++ +.++|+|+|+++.+ ...+++++++
T Consensus 9 ~Evl~~L~-~~pg~~vlD~TlG~GGhS~~il~~~~------------~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~ 75 (296)
T PRK00050 9 DEVVDALA-IKPDGIYVDGTFGGGGHSRAILERLG------------PKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHG 75 (296)
T ss_pred HHHHHhhC-CCCCCEEEEeCcCChHHHHHHHHhCC------------CCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeC
Confidence 34444443 26788999999999999999999875 46899999999843 1236888999
Q ss_pred CCCChhhHHHHHHhcCCCcccEEEeCC
Q 025715 101 DITNARTAEVVIRHFDGCKADLVVCDG 127 (249)
Q Consensus 101 Di~~~~~~~~i~~~~~~~~~DlVlsD~ 127 (249)
|..+... +... .-.++|.|+.|.
T Consensus 76 ~f~~l~~---~l~~-~~~~vDgIl~DL 98 (296)
T PRK00050 76 NFSNLKE---VLAE-GLGKVDGILLDL 98 (296)
T ss_pred CHHHHHH---HHHc-CCCccCEEEECC
Confidence 8877532 1111 113799999995
No 141
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.51 E-value=7.7e-07 Score=79.41 Aligned_cols=137 Identities=17% Similarity=0.108 Sum_probs=93.1
Q ss_pred ccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeec-CCCChh
Q 025715 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQG-DITNAR 106 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~g-Di~~~~ 106 (249)
.++|..|||=-||||++...+. .+| .+++|.|++.-. .++...++.+ |+++.+
T Consensus 195 v~~G~~vlDPFcGTGgiLiEag-l~G--------------~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lp 259 (347)
T COG1041 195 VKRGELVLDPFCGTGGILIEAG-LMG--------------ARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLP 259 (347)
T ss_pred cccCCEeecCcCCccHHHHhhh-hcC--------------ceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCC
Confidence 3789999999999999987765 455 799999998622 0233444555 888865
Q ss_pred hHHHHHHhcCCCcccEEEeCCCCCCCCCCC-cCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCCCHHHHHHHHhcCCC
Q 025715 107 TAEVVIRHFDGCKADLVVCDGAPDVTGLHD-MDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFP 185 (249)
Q Consensus 107 ~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~-~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~~~l~~~l~~~f~ 185 (249)
+.+.++|.|++|++-. ... .......+|+..+++.+.++|++||.+++-... ....+.....|+
T Consensus 260 --------l~~~~vdaIatDPPYG---rst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p~----~~~~~~~~~~f~ 324 (347)
T COG1041 260 --------LRDNSVDAIATDPPYG---RSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAPR----DPRHELEELGFK 324 (347)
T ss_pred --------CCCCccceEEecCCCC---cccccccccHHHHHHHHHHHHHHHhhcCcEEEEecCC----cchhhHhhcCce
Confidence 4556799999998532 211 111224678899999999999999999986542 222233344577
Q ss_pred eeEEecCCCCCCCCceEEEE
Q 025715 186 VVTFAKPKSSRNSSIEAFAV 205 (249)
Q Consensus 186 ~v~~~kP~~sr~~s~E~y~v 205 (249)
-+..+.-...+.-.+.+|++
T Consensus 325 v~~~~~~~~H~sLtR~i~v~ 344 (347)
T COG1041 325 VLGRFTMRVHGSLTRVIYVV 344 (347)
T ss_pred EEEEEEEeecCceEEEEEEE
Confidence 77666555555555666644
No 142
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.46 E-value=5.7e-06 Score=67.31 Aligned_cols=143 Identities=17% Similarity=0.176 Sum_probs=94.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC--------CC--CceEeecCCCChhhHHHH
Q 025715 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP--------IE--GVIQVQGDITNARTAEVV 111 (249)
Q Consensus 42 g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~--------~~--~v~~~~gDi~~~~~~~~i 111 (249)
..-++++|||+|..+..+++..+ +.....+.|++|.+. .. ++..++.|+.+
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~------------~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~------- 104 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIG------------PQALYLATDINPEALEATLETARCNRVHIDVVRTDLLS------- 104 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcC------------CCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHh-------
Confidence 57899999999999999999887 467899999999652 12 23455666543
Q ss_pred HHhcCCCcccEEEeCCCCCCCCCCCc-CHHH---------HHHHHHHHHHHHHHhccCCCEEEEEEecCCCHHHHHHHHh
Q 025715 112 IRHFDGCKADLVVCDGAPDVTGLHDM-DEFV---------QSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLK 181 (249)
Q Consensus 112 ~~~~~~~~~DlVlsD~~~~~~g~~~~-~~~~---------~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~~~l~~~l~ 181 (249)
.+..+++|+++-|++...+..... ++.. -.+.....+...-.+|.|.|.|.+-..+.....+++.+++
T Consensus 105 --~l~~~~VDvLvfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~p~ei~k~l~ 182 (209)
T KOG3191|consen 105 --GLRNESVDVLVFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANKPKEILKILE 182 (209)
T ss_pred --hhccCCccEEEECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcCHHHHHHHHh
Confidence 345589999999985433221111 1110 1223445566667799999999997777777888888776
Q ss_pred cC-CCeeEEecCCCCCCCCceEEEEEeec
Q 025715 182 LF-FPVVTFAKPKSSRNSSIEAFAVCENY 209 (249)
Q Consensus 182 ~~-f~~v~~~kP~~sr~~s~E~y~v~~g~ 209 (249)
.. |....+. .|....|...|-+.+
T Consensus 183 ~~g~~~~~~~----~Rk~~~E~l~ilkf~ 207 (209)
T KOG3191|consen 183 KKGYGVRIAM----QRKAGGETLSILKFT 207 (209)
T ss_pred hcccceeEEE----EEecCCceEEEEEEE
Confidence 54 4433322 245555665555544
No 143
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.42 E-value=2.3e-06 Score=74.77 Aligned_cols=140 Identities=16% Similarity=0.167 Sum_probs=84.9
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC---------C------CCCceEeecCCCCh
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------P------IEGVIQVQGDITNA 105 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~---------~------~~~v~~~~gDi~~~ 105 (249)
.+.+||++|||.|+.+..+++..+ ..+|+++|+++.. . .++++++.+|...
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~-------------~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~- 137 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKS-------------VEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFK- 137 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCC-------------cceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHH-
Confidence 456999999999999988876532 3689999999732 0 1345556555433
Q ss_pred hhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHH-HHHHHHHHHHhccCCCEEEEEEecCCC----HHHHHHHH
Q 025715 106 RTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQL-ILAGLTVVTHVLKEGGKFIAKIFRGKD----TSLLYCQL 180 (249)
Q Consensus 106 ~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l-~~~~l~~a~~~Lk~gG~lv~k~~~~~~----~~~l~~~l 180 (249)
.+. . ..++||+|++|..... +. .. .+ ....+..+.+.|+|||.+++....+.. ...+...+
T Consensus 138 ----~l~-~-~~~~yDvIi~D~~~~~-~~---~~----~l~~~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~tl 203 (270)
T TIGR00417 138 ----FLA-D-TENTFDVIIVDSTDPV-GP---AE----TLFTKEFYELLKKALNEDGIFVAQSESPWIQLELITDLKRDV 203 (270)
T ss_pred ----HHH-h-CCCCccEEEEeCCCCC-Cc---cc----chhHHHHHHHHHHHhCCCcEEEEcCCCcccCHHHHHHHHHHH
Confidence 121 1 1368999999975322 11 10 11 135677888999999999985332221 23344556
Q ss_pred hcCCCeeEEecCC-CCCCCCceEEEEEee
Q 025715 181 KLFFPVVTFAKPK-SSRNSSIEAFAVCEN 208 (249)
Q Consensus 181 ~~~f~~v~~~kP~-~sr~~s~E~y~v~~g 208 (249)
+..|..+..+... .+-+...-.|++|..
T Consensus 204 ~~~F~~v~~~~~~vp~~~~g~~~~~~as~ 232 (270)
T TIGR00417 204 KEAFPITEYYTANIPTYPSGLWTFTIGSK 232 (270)
T ss_pred HHHCCCeEEEEEEcCccccchhEEEEEEC
Confidence 6778888765321 222222236777754
No 144
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.41 E-value=1.7e-06 Score=72.35 Aligned_cols=99 Identities=12% Similarity=0.046 Sum_probs=64.1
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhhH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~~ 108 (249)
.++.+|||||||+|.++..++.+.. .+|+++|+++.. .+.+++++++|+.+.
T Consensus 52 ~~~~~vLDl~~GsG~l~l~~lsr~a--------------~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~--- 114 (199)
T PRK10909 52 IVDARCLDCFAGSGALGLEALSRYA--------------AGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSF--- 114 (199)
T ss_pred cCCCEEEEcCCCccHHHHHHHHcCC--------------CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHH---
Confidence 3578999999999999986555432 699999999742 134678888887542
Q ss_pred HHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEec
Q 025715 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFR 169 (249)
Q Consensus 109 ~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~ 169 (249)
+. . ...+||+|++|++.. .|. . ......+.. ..+|+|+|.+++....
T Consensus 115 --l~-~-~~~~fDlV~~DPPy~-~g~---~-----~~~l~~l~~-~~~l~~~~iv~ve~~~ 161 (199)
T PRK10909 115 --LA-Q-PGTPHNVVFVDPPFR-KGL---L-----EETINLLED-NGWLADEALIYVESEV 161 (199)
T ss_pred --Hh-h-cCCCceEEEECCCCC-CCh---H-----HHHHHHHHH-CCCcCCCcEEEEEecC
Confidence 11 1 234699999998632 221 1 111122222 3568999988886543
No 145
>PLN02476 O-methyltransferase
Probab=98.41 E-value=2e-06 Score=75.28 Aligned_cols=99 Identities=15% Similarity=0.211 Sum_probs=71.4
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CC-CCceEeecCCCChhh
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNART 107 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~-~~v~~~~gDi~~~~~ 107 (249)
.+..+||++|++.|..+.+++..++ ++++|+++|.++.. .+ .+++++.||..+ .
T Consensus 117 ~~ak~VLEIGT~tGySal~lA~al~------------~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e--~ 182 (278)
T PLN02476 117 LGAERCIEVGVYTGYSSLAVALVLP------------ESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAE--S 182 (278)
T ss_pred cCCCeEEEecCCCCHHHHHHHHhCC------------CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHH--H
Confidence 3568999999999999999998776 46899999999842 12 367888898754 2
Q ss_pred HHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEE
Q 025715 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (249)
Q Consensus 108 ~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k 166 (249)
+..+...-..++||+|+.|+.. .. +...++.+.++|+|||.+++-
T Consensus 183 L~~l~~~~~~~~FD~VFIDa~K--------~~------Y~~y~e~~l~lL~~GGvIV~D 227 (278)
T PLN02476 183 LKSMIQNGEGSSYDFAFVDADK--------RM------YQDYFELLLQLVRVGGVIVMD 227 (278)
T ss_pred HHHHHhcccCCCCCEEEECCCH--------HH------HHHHHHHHHHhcCCCcEEEEe
Confidence 2222211123589999999741 11 234577788999999999863
No 146
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=98.40 E-value=4.4e-07 Score=76.21 Aligned_cols=99 Identities=21% Similarity=0.249 Sum_probs=71.9
Q ss_pred ccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC--C-------CCCceEeecCCCChhhHH
Q 025715 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--P-------IEGVIQVQGDITNARTAE 109 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~--~-------~~~v~~~~gDi~~~~~~~ 109 (249)
+++|.+||-||+++|....+++.-.+ ++|.|+||+.++.. . .+|+-.+-+|.+.+....
T Consensus 71 ik~gskVLYLGAasGTTVSHvSDIvg------------~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~DAr~P~~Y~ 138 (229)
T PF01269_consen 71 IKPGSKVLYLGAASGTTVSHVSDIVG------------PDGVVYAVEFSPRSMRDLLNLAKKRPNIIPILEDARHPEKYR 138 (229)
T ss_dssp --TT-EEEEETTTTSHHHHHHHHHHT------------TTSEEEEEESSHHHHHHHHHHHHHSTTEEEEES-TTSGGGGT
T ss_pred CCCCCEEEEecccCCCccchhhhccC------------CCCcEEEEEecchhHHHHHHHhccCCceeeeeccCCChHHhh
Confidence 58999999999999999999999987 67999999999832 1 378878889999886532
Q ss_pred HHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEE
Q 025715 110 VVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKI 167 (249)
Q Consensus 110 ~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~ 167 (249)
. +- +.+|+|++|.+-. +.. +.+...|...||+||.+++.+
T Consensus 139 ~----lv-~~VDvI~~DVaQp-------~Qa------~I~~~Na~~fLk~gG~~~i~i 178 (229)
T PF01269_consen 139 M----LV-EMVDVIFQDVAQP-------DQA------RIAALNARHFLKPGGHLIISI 178 (229)
T ss_dssp T----TS---EEEEEEE-SST-------THH------HHHHHHHHHHEEEEEEEEEEE
T ss_pred c----cc-ccccEEEecCCCh-------HHH------HHHHHHHHhhccCCcEEEEEE
Confidence 2 22 4899999997411 211 235667788999999999754
No 147
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.40 E-value=6.4e-07 Score=74.29 Aligned_cols=72 Identities=21% Similarity=0.232 Sum_probs=52.2
Q ss_pred ccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC----CCCCceEeecCCCChhhHHHHHHh
Q 025715 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----PIEGVIQVQGDITNARTAEVVIRH 114 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~----~~~~v~~~~gDi~~~~~~~~i~~~ 114 (249)
+.++.+|||+|||+|.++..+++..+ ..++|+|+++.. ...+++++++|+.+.. ..
T Consensus 11 i~~~~~iLDiGcG~G~~~~~l~~~~~--------------~~~~giD~s~~~i~~a~~~~~~~~~~d~~~~l------~~ 70 (194)
T TIGR02081 11 IPPGSRVLDLGCGDGELLALLRDEKQ--------------VRGYGIEIDQDGVLACVARGVNVIQGDLDEGL------EA 70 (194)
T ss_pred cCCCCEEEEeCCCCCHHHHHHHhccC--------------CcEEEEeCCHHHHHHHHHcCCeEEEEEhhhcc------cc
Confidence 45788999999999999988876533 578999998732 1246788888876410 01
Q ss_pred cCCCcccEEEeCCCCC
Q 025715 115 FDGCKADLVVCDGAPD 130 (249)
Q Consensus 115 ~~~~~~DlVlsD~~~~ 130 (249)
+.+++||+|++..+..
T Consensus 71 ~~~~sfD~Vi~~~~l~ 86 (194)
T TIGR02081 71 FPDKSFDYVILSQTLQ 86 (194)
T ss_pred cCCCCcCEEEEhhHhH
Confidence 3457899999987543
No 148
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=1.7e-06 Score=72.18 Aligned_cols=89 Identities=21% Similarity=0.292 Sum_probs=67.3
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhhH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~~ 108 (249)
++|++||++|||+|.-+..+++.. ++|+++|+.+.. .+.||.+++||-..-..
T Consensus 71 ~~g~~VLEIGtGsGY~aAvla~l~---------------~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~- 134 (209)
T COG2518 71 KPGDRVLEIGTGSGYQAAVLARLV---------------GRVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWP- 134 (209)
T ss_pred CCCCeEEEECCCchHHHHHHHHHh---------------CeEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCC-
Confidence 689999999999999999999875 599999998731 35689999999876321
Q ss_pred HHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEe
Q 025715 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (249)
Q Consensus 109 ~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~ 168 (249)
....||.|+..++.+. ... .-.+.||+||++|+=+-
T Consensus 135 -------~~aPyD~I~Vtaaa~~-----vP~------------~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 135 -------EEAPYDRIIVTAAAPE-----VPE------------ALLDQLKPGGRLVIPVG 170 (209)
T ss_pred -------CCCCcCEEEEeeccCC-----CCH------------HHHHhcccCCEEEEEEc
Confidence 2368999998875432 121 12568999999998543
No 149
>PRK03612 spermidine synthase; Provisional
Probab=98.39 E-value=1.4e-06 Score=83.02 Aligned_cols=118 Identities=17% Similarity=0.142 Sum_probs=77.1
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----C-------------CCCceEeecC
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----P-------------IEGVIQVQGD 101 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----~-------------~~~v~~~~gD 101 (249)
++..+|||+|||.|..+..++++ + ...+|++||+++.. . .++++++.+|
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~-~------------~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~D 362 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKY-P------------DVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDD 362 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC-C------------CcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEECh
Confidence 45689999999999999888764 3 23699999998721 1 1467777888
Q ss_pred CCChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHH-HHHHHHHHHHhccCCCEEEEEEec----CCCHHHH
Q 025715 102 ITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQL-ILAGLTVVTHVLKEGGKFIAKIFR----GKDTSLL 176 (249)
Q Consensus 102 i~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l-~~~~l~~a~~~Lk~gG~lv~k~~~----~~~~~~l 176 (249)
..+. +. .. .++||+|++|..... + ... ..+ ....++.+.+.|+|||.+++.... .....++
T Consensus 363 a~~~-----l~-~~-~~~fDvIi~D~~~~~-~---~~~---~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i 428 (521)
T PRK03612 363 AFNW-----LR-KL-AEKFDVIIVDLPDPS-N---PAL---GKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSI 428 (521)
T ss_pred HHHH-----HH-hC-CCCCCEEEEeCCCCC-C---cch---hccchHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHH
Confidence 7542 11 22 368999999964221 1 110 111 134677888999999999986432 2224456
Q ss_pred HHHHhcC-C
Q 025715 177 YCQLKLF-F 184 (249)
Q Consensus 177 ~~~l~~~-f 184 (249)
...+++. |
T Consensus 429 ~~~l~~~gf 437 (521)
T PRK03612 429 EATLEAAGL 437 (521)
T ss_pred HHHHHHcCC
Confidence 6666665 6
No 150
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.37 E-value=2.6e-07 Score=82.93 Aligned_cols=104 Identities=23% Similarity=0.177 Sum_probs=66.6
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC------C---------------CCceEee
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP------I---------------EGVIQVQ 99 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~------~---------------~~v~~~~ 99 (249)
++.+|||||||-||-..-+... .-..++|+|++.... + -...++.
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~--------------~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~ 127 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKA--------------KIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIA 127 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHT--------------T-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEE
T ss_pred CCCeEEEecCCCchhHHHHHhc--------------CCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheec
Confidence 7899999999999966655542 237999999986310 0 1245678
Q ss_pred cCCCChhhHHHHHHhcCC--CcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEec
Q 025715 100 GDITNARTAEVVIRHFDG--CKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFR 169 (249)
Q Consensus 100 gDi~~~~~~~~i~~~~~~--~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~ 169 (249)
+|..... +.+.+.. ..||+|-|-.++...- ..+. -.+..|..+...|+|||.|+.++..
T Consensus 128 ~D~f~~~----l~~~~~~~~~~FDvVScQFalHY~F---ese~----~ar~~l~Nvs~~Lk~GG~FIgT~~d 188 (331)
T PF03291_consen 128 ADCFSES----LREKLPPRSRKFDVVSCQFALHYAF---ESEE----KARQFLKNVSSLLKPGGYFIGTTPD 188 (331)
T ss_dssp STTCCSH----HHCTSSSTTS-EEEEEEES-GGGGG---SSHH----HHHHHHHHHHHTEEEEEEEEEEEE-
T ss_pred cccccch----hhhhccccCCCcceeehHHHHHHhc---CCHH----HHHHHHHHHHHhcCCCCEEEEEecC
Confidence 8887643 3333444 4899999987665431 1221 2356788999999999999987653
No 151
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=98.37 E-value=1.9e-06 Score=73.30 Aligned_cols=97 Identities=18% Similarity=0.103 Sum_probs=65.6
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC----------CCCceEeecCCCChhhHH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----------IEGVIQVQGDITNARTAE 109 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~----------~~~v~~~~gDi~~~~~~~ 109 (249)
.++.+|||+|||+|.++..+++. + ..++++|+++... ...+.+..+|+.+..
T Consensus 47 ~~~~~vLdiG~G~G~~~~~l~~~-~--------------~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~--- 108 (233)
T PRK05134 47 LFGKRVLDVGCGGGILSESMARL-G--------------ADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELA--- 108 (233)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHc-C--------------CeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhh---
Confidence 46789999999999999888764 2 5799999987421 113455556554321
Q ss_pred HHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEec
Q 025715 110 VVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFR 169 (249)
Q Consensus 110 ~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~ 169 (249)
. ...++||+|++.......+ +. ...+..+.++|+|||.+++..+.
T Consensus 109 ---~-~~~~~fD~Ii~~~~l~~~~----~~-------~~~l~~~~~~L~~gG~l~v~~~~ 153 (233)
T PRK05134 109 ---A-EHPGQFDVVTCMEMLEHVP----DP-------ASFVRACAKLVKPGGLVFFSTLN 153 (233)
T ss_pred ---h-hcCCCccEEEEhhHhhccC----CH-------HHHHHHHHHHcCCCcEEEEEecC
Confidence 1 1246899999865433221 11 24678889999999999986553
No 152
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=98.36 E-value=3.5e-06 Score=74.03 Aligned_cols=96 Identities=20% Similarity=0.196 Sum_probs=61.9
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC--------CCC--ceEeecCCCChhhHHH
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP--------IEG--VIQVQGDITNARTAEV 110 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~--------~~~--v~~~~gDi~~~~~~~~ 110 (249)
.|.+|||+|||.|.++..++.+. ...|+|+|-++.-. +-+ .....-.+ .++.
T Consensus 115 ~gk~VLDIGC~nGY~~frM~~~G--------------A~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lpl----gvE~ 176 (315)
T PF08003_consen 115 KGKRVLDIGCNNGYYSFRMLGRG--------------AKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPL----GVED 176 (315)
T ss_pred CCCEEEEecCCCcHHHHHHhhcC--------------CCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCc----chhh
Confidence 47899999999999998888763 36899999887320 111 11111111 1111
Q ss_pred HHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEe
Q 025715 111 VIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (249)
Q Consensus 111 i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~ 168 (249)
+.. .++||+|+|=|..... .++ ...|......|++||.||+.+.
T Consensus 177 Lp~---~~~FDtVF~MGVLYHr----r~P-------l~~L~~Lk~~L~~gGeLvLETl 220 (315)
T PF08003_consen 177 LPN---LGAFDTVFSMGVLYHR----RSP-------LDHLKQLKDSLRPGGELVLETL 220 (315)
T ss_pred ccc---cCCcCEEEEeeehhcc----CCH-------HHHHHHHHHhhCCCCEEEEEEe
Confidence 111 3689999997754321 122 2457778889999999998765
No 153
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=98.34 E-value=1.3e-06 Score=72.48 Aligned_cols=109 Identities=19% Similarity=0.185 Sum_probs=75.2
Q ss_pred eEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCce-EeecCCCChhhHHHH
Q 025715 44 RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVI-QVQGDITNARTAEVV 111 (249)
Q Consensus 44 ~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~-~~~gDi~~~~~~~~i 111 (249)
.||++|||||.--.++-.. +...|+.+|.++.. ..+++. |+.++..+.+
T Consensus 79 ~vLEvgcGtG~Nfkfy~~~--------------p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~----- 139 (252)
T KOG4300|consen 79 DVLEVGCGTGANFKFYPWK--------------PINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLP----- 139 (252)
T ss_pred ceEEecccCCCCcccccCC--------------CCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCc-----
Confidence 5799999999976655422 35799999999832 124555 7778776643
Q ss_pred HHhcCCCcccEEEeCCC-CCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCCCHHHHHHHHhcCCC
Q 025715 112 IRHFDGCKADLVVCDGA-PDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFP 185 (249)
Q Consensus 112 ~~~~~~~~~DlVlsD~~-~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~~~l~~~l~~~f~ 185 (249)
.+.+.++|.|++-.. +++. +. ..+|....++|||||.+++-.+-......+..+++++++
T Consensus 140 --~l~d~s~DtVV~TlvLCSve-----~~-------~k~L~e~~rlLRpgG~iifiEHva~~y~~~n~i~q~v~e 200 (252)
T KOG4300|consen 140 --QLADGSYDTVVCTLVLCSVE-----DP-------VKQLNEVRRLLRPGGRIIFIEHVAGEYGFWNRILQQVAE 200 (252)
T ss_pred --ccccCCeeeEEEEEEEeccC-----CH-------HHHHHHHHHhcCCCcEEEEEecccccchHHHHHHHHHhc
Confidence 135789999998753 2221 22 357889999999999999866655555556666665544
No 154
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.33 E-value=5.7e-06 Score=77.27 Aligned_cols=70 Identities=17% Similarity=0.195 Sum_probs=52.3
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhhH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~~ 108 (249)
.++.+|||||||+|.++..+++.. .+|+|+|+++.+ .+.+++++++|+.+..
T Consensus 296 ~~~~~VLDlgcGtG~~sl~la~~~---------------~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l-- 358 (443)
T PRK13168 296 QPGDRVLDLFCGLGNFTLPLARQA---------------AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDF-- 358 (443)
T ss_pred CCCCEEEEEeccCCHHHHHHHHhC---------------CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhh--
Confidence 577899999999999999998763 589999999842 2356889999986421
Q ss_pred HHHHHhcCCCcccEEEeCCC
Q 025715 109 EVVIRHFDGCKADLVVCDGA 128 (249)
Q Consensus 109 ~~i~~~~~~~~~DlVlsD~~ 128 (249)
... .+.+.+||+|++|++
T Consensus 359 ~~~--~~~~~~fD~Vi~dPP 376 (443)
T PRK13168 359 TDQ--PWALGGFDKVLLDPP 376 (443)
T ss_pred hhh--hhhcCCCCEEEECcC
Confidence 000 123457999999974
No 155
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.33 E-value=1.9e-06 Score=72.70 Aligned_cols=96 Identities=20% Similarity=0.190 Sum_probs=65.2
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhhHH
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTAE 109 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~~~ 109 (249)
.+.+|||+|||+|.++..+++. + ..++++|+++.. ...++++..+|+.+...
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~-~--------------~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~-- 107 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARL-G--------------ANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAE-- 107 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhc-C--------------CeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhc--
Confidence 4689999999999999888764 2 469999998732 11246666676654221
Q ss_pred HHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEec
Q 025715 110 VVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFR 169 (249)
Q Consensus 110 ~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~ 169 (249)
-..++||+|++........ +. ...+..+.++|+|||.+++....
T Consensus 108 -----~~~~~~D~i~~~~~l~~~~----~~-------~~~l~~~~~~L~~gG~l~i~~~~ 151 (224)
T TIGR01983 108 -----KGAKSFDVVTCMEVLEHVP----DP-------QAFIRACAQLLKPGGILFFSTIN 151 (224)
T ss_pred -----CCCCCccEEEehhHHHhCC----CH-------HHHHHHHHHhcCCCcEEEEEecC
Confidence 0136899999875432211 11 24678888999999999886553
No 156
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.33 E-value=9.4e-07 Score=73.63 Aligned_cols=104 Identities=15% Similarity=0.181 Sum_probs=70.8
Q ss_pred CCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhhHHH
Q 025715 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTAEV 110 (249)
Q Consensus 42 g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~~~~ 110 (249)
...+||+|||.|.|...++...+ +..++|+|+.... .++|+.++++|....
T Consensus 18 ~~l~lEIG~G~G~~l~~~A~~~P-------------d~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~----- 79 (195)
T PF02390_consen 18 NPLILEIGCGKGEFLIELAKRNP-------------DINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDAREL----- 79 (195)
T ss_dssp CEEEEEET-TTSHHHHHHHHHST-------------TSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTH-----
T ss_pred CCeEEEecCCCCHHHHHHHHHCC-------------CCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHH-----
Confidence 34999999999999999998864 6899999998732 468999999999873
Q ss_pred HHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHH-HHHHHHHHHHhccCCCEEEEEE
Q 025715 111 VIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQL-ILAGLTVVTHVLKEGGKFIAKI 167 (249)
Q Consensus 111 i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l-~~~~l~~a~~~Lk~gG~lv~k~ 167 (249)
+...++++++|-|..+-+-++.-.+ + .-.++ ....+....++|+|||.+.+++
T Consensus 80 l~~~~~~~~v~~i~i~FPDPWpK~r---H-~krRl~~~~fl~~~~~~L~~gG~l~~~T 133 (195)
T PF02390_consen 80 LRRLFPPGSVDRIYINFPDPWPKKR---H-HKRRLVNPEFLELLARVLKPGGELYFAT 133 (195)
T ss_dssp HHHHSTTTSEEEEEEES-----SGG---G-GGGSTTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred HhhcccCCchheEEEeCCCCCcccc---h-hhhhcCCchHHHHHHHHcCCCCEEEEEe
Confidence 2234566899999887542222111 0 00111 2456778889999999998865
No 157
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.30 E-value=1.1e-05 Score=66.13 Aligned_cols=81 Identities=22% Similarity=0.143 Sum_probs=58.1
Q ss_pred hhhhHHhhhhhcCcccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC----------CCC
Q 025715 25 SAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----------IEG 94 (249)
Q Consensus 25 a~~KL~ei~~~~~~~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~----------~~~ 94 (249)
+++-|+.+. ..+. -.|.+|+|||||+|.++..++-. + ...|++||+.+.+. .-+
T Consensus 31 Aa~il~~a~-~~g~-l~g~~V~DlG~GTG~La~ga~~l-G-------------a~~V~~vdiD~~a~ei~r~N~~~l~g~ 94 (198)
T COG2263 31 AAYILWVAY-LRGD-LEGKTVLDLGAGTGILAIGAALL-G-------------ASRVLAVDIDPEALEIARANAEELLGD 94 (198)
T ss_pred HHHHHHHHH-HcCC-cCCCEEEEcCCCcCHHHHHHHhc-C-------------CcEEEEEecCHHHHHHHHHHHHhhCCc
Confidence 344455544 2221 25679999999999999877754 3 37999999998531 235
Q ss_pred ceEeecCCCChhhHHHHHHhcCCCcccEEEeCCCCCCC
Q 025715 95 VIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVT 132 (249)
Q Consensus 95 v~~~~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~ 132 (249)
+.++.+|+++. ...+|.|+.|+++...
T Consensus 95 v~f~~~dv~~~-----------~~~~dtvimNPPFG~~ 121 (198)
T COG2263 95 VEFVVADVSDF-----------RGKFDTVIMNPPFGSQ 121 (198)
T ss_pred eEEEEcchhhc-----------CCccceEEECCCCccc
Confidence 88999999874 2679999999877544
No 158
>PRK01581 speE spermidine synthase; Validated
Probab=98.29 E-value=1.2e-05 Score=72.60 Aligned_cols=122 Identities=16% Similarity=0.036 Sum_probs=77.0
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----C-------------CCCceEeecCC
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----P-------------IEGVIQVQGDI 102 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----~-------------~~~v~~~~gDi 102 (249)
...+||++|+|.|+.+..+++.. +..+|++||+++.. . .++++.+.+|.
T Consensus 150 ~PkrVLIIGgGdG~tlrelLk~~-------------~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da 216 (374)
T PRK01581 150 DPKRVLILGGGDGLALREVLKYE-------------TVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDA 216 (374)
T ss_pred CCCEEEEECCCHHHHHHHHHhcC-------------CCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcH
Confidence 35799999999999877776542 24699999999831 0 14677777776
Q ss_pred CChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHH-HHHHHHHHHhccCCCEEEEEEecCCCH----HHHH
Q 025715 103 TNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLI-LAGLTVVTHVLKEGGKFIAKIFRGKDT----SLLY 177 (249)
Q Consensus 103 ~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~-~~~l~~a~~~Lk~gG~lv~k~~~~~~~----~~l~ 177 (249)
.+. +. . ..++||+|++|... ..+.. ...+. ...+..+.+.|+|||.|++..-.+... ..+.
T Consensus 217 ~~f-----L~-~-~~~~YDVIIvDl~D-P~~~~------~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~~~~~~~~~i~ 282 (374)
T PRK01581 217 KEF-----LS-S-PSSLYDVIIIDFPD-PATEL------LSTLYTSELFARIATFLTEDGAFVCQSNSPADAPLVYWSIG 282 (374)
T ss_pred HHH-----HH-h-cCCCccEEEEcCCC-ccccc------hhhhhHHHHHHHHHHhcCCCcEEEEecCChhhhHHHHHHHH
Confidence 542 21 1 23689999999632 11110 11222 456788899999999998854333222 2234
Q ss_pred HHHhcCCCeeEE
Q 025715 178 CQLKLFFPVVTF 189 (249)
Q Consensus 178 ~~l~~~f~~v~~ 189 (249)
..++..|..+..
T Consensus 283 ~tL~~af~~v~~ 294 (374)
T PRK01581 283 NTIEHAGLTVKS 294 (374)
T ss_pred HHHHHhCCceEE
Confidence 455666655554
No 159
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.26 E-value=5.2e-06 Score=68.80 Aligned_cols=101 Identities=11% Similarity=0.002 Sum_probs=64.5
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CC-CCceEeecCCCChhhH
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNARTA 108 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~-~~v~~~~gDi~~~~~~ 108 (249)
.|.+||||+||+|+++..++.+.. .+|++||.++.. .+ .+++++++|+.+. +
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga--------------~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~--l 112 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGA--------------KVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRA--L 112 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCC--------------CEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHH--H
Confidence 578999999999999999998743 589999999742 12 2467788887442 1
Q ss_pred HHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEec
Q 025715 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFR 169 (249)
Q Consensus 109 ~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~ 169 (249)
..+.. ....+|+|+.|+++... .. ..++ ..+.. ..+|+++|.+|+....
T Consensus 113 ~~~~~--~~~~~dvv~~DPPy~~~----~~----~~~l-~~l~~-~~~l~~~~iiv~E~~~ 161 (189)
T TIGR00095 113 KFLAK--KPTFDNVIYLDPPFFNG----AL----QALL-ELCEN-NWILEDTVLIVVEEDR 161 (189)
T ss_pred HHhhc--cCCCceEEEECcCCCCC----cH----HHHH-HHHHH-CCCCCCCeEEEEEecC
Confidence 11110 12348999999865321 11 1111 12222 4589999988886443
No 160
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=98.25 E-value=4.5e-06 Score=70.74 Aligned_cols=95 Identities=15% Similarity=0.086 Sum_probs=64.6
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC--------CC---------------CCce
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--------PI---------------EGVI 96 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~--------~~---------------~~v~ 96 (249)
.++.+|||+|||.|.-+.+++++ | ..|+|||+++.+ .+ ..++
T Consensus 36 ~~~~rvL~~gCG~G~da~~LA~~-G--------------~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~ 100 (218)
T PRK13255 36 PAGSRVLVPLCGKSLDMLWLAEQ-G--------------HEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEIT 100 (218)
T ss_pred CCCCeEEEeCCCChHhHHHHHhC-C--------------CeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceE
Confidence 46679999999999999999874 3 699999999742 01 2467
Q ss_pred EeecCCCChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEE
Q 025715 97 QVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIA 165 (249)
Q Consensus 97 ~~~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~ 165 (249)
+.++|+.+... . ....||+|+.-..+.. ... ..-...+....++|+|||++++
T Consensus 101 ~~~~D~~~l~~------~-~~~~fd~v~D~~~~~~-----l~~----~~R~~~~~~l~~lL~pgG~~~l 153 (218)
T PRK13255 101 IYCGDFFALTA------A-DLADVDAVYDRAALIA-----LPE----EMRERYVQQLAALLPAGCRGLL 153 (218)
T ss_pred EEECcccCCCc------c-cCCCeeEEEehHhHhh-----CCH----HHHHHHHHHHHHHcCCCCeEEE
Confidence 77888887531 0 1247888886442211 111 1223567788899999997554
No 161
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.23 E-value=2.4e-06 Score=71.68 Aligned_cols=99 Identities=20% Similarity=0.267 Sum_probs=70.8
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CC-CCceEeecCCCChhh
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNART 107 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~-~~v~~~~gDi~~~~~ 107 (249)
.+..+||++|++.|.=+.++++.++ ++++|+.+|+++.. .+ .+++++.||..+ .
T Consensus 44 ~~~k~vLEIGt~~GySal~la~~l~------------~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~--~ 109 (205)
T PF01596_consen 44 TRPKRVLEIGTFTGYSALWLAEALP------------EDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALE--V 109 (205)
T ss_dssp HT-SEEEEESTTTSHHHHHHHHTST------------TTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHH--H
T ss_pred cCCceEEEeccccccHHHHHHHhhc------------ccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHh--h
Confidence 3557999999999999999998876 57899999999832 12 367888898764 3
Q ss_pred HHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEE
Q 025715 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (249)
Q Consensus 108 ~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k 166 (249)
+..+...-..+.||+|+.|+.. .. +..-+..+.++|+|||.+++-
T Consensus 110 l~~l~~~~~~~~fD~VFiDa~K--------~~------y~~y~~~~~~ll~~ggvii~D 154 (205)
T PF01596_consen 110 LPELANDGEEGQFDFVFIDADK--------RN------YLEYFEKALPLLRPGGVIIAD 154 (205)
T ss_dssp HHHHHHTTTTTSEEEEEEESTG--------GG------HHHHHHHHHHHEEEEEEEEEE
T ss_pred HHHHHhccCCCceeEEEEcccc--------cc------hhhHHHHHhhhccCCeEEEEc
Confidence 3334332223589999999742 11 123466778999999999974
No 162
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=98.21 E-value=2.6e-06 Score=71.83 Aligned_cols=90 Identities=21% Similarity=0.181 Sum_probs=59.6
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CC-CCceEeecCCCChhh
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNART 107 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~-~~v~~~~gDi~~~~~ 107 (249)
.++.+|||+|||+|.++.+++.. + .+|+|+|+++.. .. .++.+..+|+.+.
T Consensus 54 ~~~~~vLDiGcG~G~~~~~la~~-~--------------~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~-- 116 (219)
T TIGR02021 54 LKGKRVLDAGCGTGLLSIELAKR-G--------------AIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSL-- 116 (219)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHC-C--------------CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhC--
Confidence 35789999999999999999864 2 589999999842 11 3677888887653
Q ss_pred HHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEE
Q 025715 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFI 164 (249)
Q Consensus 108 ~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv 164 (249)
. ++||+|++...... .... ....++..+.+++++++.+.
T Consensus 117 --------~-~~fD~ii~~~~l~~-----~~~~----~~~~~l~~i~~~~~~~~~i~ 155 (219)
T TIGR02021 117 --------C-GEFDIVVCMDVLIH-----YPAS----DMAKALGHLASLTKERVIFT 155 (219)
T ss_pred --------C-CCcCEEEEhhHHHh-----CCHH----HHHHHHHHHHHHhCCCEEEE
Confidence 2 68999998432211 1111 12345666667777654443
No 163
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.20 E-value=4.7e-05 Score=68.06 Aligned_cols=150 Identities=14% Similarity=0.136 Sum_probs=87.2
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC------------CC-CceEe-ecCCCChh
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP------------IE-GVIQV-QGDITNAR 106 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~------------~~-~v~~~-~gDi~~~~ 106 (249)
++.++||+|||+|+....++.+.. ..+++|+|+++.+. +. .+++. +.|..+
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~-------------~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~-- 178 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEY-------------GWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKA-- 178 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCC-------------CCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhh--
Confidence 457999999999999988887653 47999999998431 11 23333 222221
Q ss_pred hHHHHHHhc--CCCcccEEEeCCCCCCCCCCC----cCHHH-----------------H---------HHHHHHHHHHHH
Q 025715 107 TAEVVIRHF--DGCKADLVVCDGAPDVTGLHD----MDEFV-----------------Q---------SQLILAGLTVVT 154 (249)
Q Consensus 107 ~~~~i~~~~--~~~~~DlVlsD~~~~~~g~~~----~~~~~-----------------~---------~~l~~~~l~~a~ 154 (249)
+...+ ..+.||+|+||+++....... ..... . ..++...+.++.
T Consensus 179 ----i~~~i~~~~~~fDlivcNPPf~~s~~ea~~~~~rk~r~~ar~~~~~~~l~f~g~~~EL~~~GGe~~fi~~mi~eS~ 254 (321)
T PRK11727 179 ----IFKGIIHKNERFDATLCNPPFHASAAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELWCEGGEVAFIKRMIEESK 254 (321)
T ss_pred ----hhhcccccCCceEEEEeCCCCcCcchhhccchhhHHhhhhccCCCccccCCcchhhheeeCCcEeeeehHhhHHHH
Confidence 11111 346899999998654332210 00000 0 112344566666
Q ss_pred HhccCCCEEEEEEecCCCHHHHHHHHhcC-CCeeEEecCCCCCCCCceEEEEEeeccCC
Q 025715 155 HVLKEGGKFIAKIFRGKDTSLLYCQLKLF-FPVVTFAKPKSSRNSSIEAFAVCENYFPP 212 (249)
Q Consensus 155 ~~Lk~gG~lv~k~~~~~~~~~l~~~l~~~-f~~v~~~kP~~sr~~s~E~y~v~~g~~~~ 212 (249)
..++..|++.+-+-...+...+...|++. ...+.+..=. .++..+.+||=.|...
T Consensus 255 ~~~~~~gwftsmv~kk~~l~~l~~~L~~~~~~~~~~~e~~---qG~~~~~~vaWsf~~~ 310 (321)
T PRK11727 255 AFAKQVLWFTSLVSKKENLPPLYRALKKVGAVEVKTIEMA---QGQKQSRFIAWTFLDD 310 (321)
T ss_pred HHHhhCcEEEEEeeccCCHHHHHHHHHHcCCceEEEEEEe---CCCeeeEEEEeecCCH
Confidence 77777888877555667788888877754 4344443211 2222334676666543
No 164
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.15 E-value=2.7e-05 Score=64.99 Aligned_cols=108 Identities=16% Similarity=0.126 Sum_probs=64.5
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCCCCCceEeecCCCChhhHHHHHHhcCCCcc
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKA 120 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~~~~v~~~~gDi~~~~~~~~i~~~~~~~~~ 120 (249)
++..|.|+|||-+..+..+.. .-.|...|+.... +. ++..|+.+.+ +.++++
T Consensus 72 ~~~viaD~GCGdA~la~~~~~----------------~~~V~SfDLva~n--~~--Vtacdia~vP--------L~~~sv 123 (219)
T PF05148_consen 72 KSLVIADFGCGDAKLAKAVPN----------------KHKVHSFDLVAPN--PR--VTACDIANVP--------LEDESV 123 (219)
T ss_dssp TTS-EEEES-TT-HHHHH--S-------------------EEEEESS-SS--TT--EEES-TTS-S----------TT-E
T ss_pred CCEEEEECCCchHHHHHhccc----------------CceEEEeeccCCC--CC--EEEecCccCc--------CCCCce
Confidence 457999999999997744431 2479999998754 33 4678998865 357899
Q ss_pred cEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEec--CCCHHHHHHHHhcC-CCeeE
Q 025715 121 DLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFR--GKDTSLLYCQLKLF-FPVVT 188 (249)
Q Consensus 121 DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~--~~~~~~l~~~l~~~-f~~v~ 188 (249)
|+++.-.+.-.+ + ....+.+|.|+||+||.|.|.... -.+...+...+..+ |+...
T Consensus 124 Dv~VfcLSLMGT-----n-------~~~fi~EA~RvLK~~G~L~IAEV~SRf~~~~~F~~~~~~~GF~~~~ 182 (219)
T PF05148_consen 124 DVAVFCLSLMGT-----N-------WPDFIREANRVLKPGGILKIAEVKSRFENVKQFIKALKKLGFKLKS 182 (219)
T ss_dssp EEEEEES---SS-------------HHHHHHHHHHHEEEEEEEEEEEEGGG-S-HHHHHHHHHCTTEEEEE
T ss_pred eEEEEEhhhhCC-----C-------cHHHHHHHHheeccCcEEEEEEecccCcCHHHHHHHHHHCCCeEEe
Confidence 999876543221 2 125688999999999999987653 34566777777765 55443
No 165
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=98.14 E-value=4.2e-06 Score=70.85 Aligned_cols=100 Identities=18% Similarity=0.158 Sum_probs=75.8
Q ss_pred ccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC---------CCCceEeecCCCChhhHH
Q 025715 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP---------IEGVIQVQGDITNARTAE 109 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~---------~~~v~~~~gDi~~~~~~~ 109 (249)
++||.+||-||++.|.-..+++..++ +++.|+||+.++... .+|+..+..|.+.+.-..
T Consensus 154 ikpGsKVLYLGAasGttVSHvSDiVG------------peG~VYAVEfs~rsGRdL~nmAkkRtNiiPIiEDArhP~KYR 221 (317)
T KOG1596|consen 154 IKPGSKVLYLGAASGTTVSHVSDIVG------------PEGCVYAVEFSHRSGRDLINMAKKRTNIIPIIEDARHPAKYR 221 (317)
T ss_pred ecCCceEEEeeccCCceeehhhcccC------------CCceEEEEEecccchHHHHHHhhccCCceeeeccCCCchhee
Confidence 58999999999999999999999887 789999999998541 357767778888765322
Q ss_pred HHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEe
Q 025715 110 VVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (249)
Q Consensus 110 ~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~ 168 (249)
.+ -..+|+|++|.+.+. .. +.+...|...||+||.||+.+-
T Consensus 222 ml-----VgmVDvIFaDvaqpd-------q~------RivaLNA~~FLk~gGhfvisik 262 (317)
T KOG1596|consen 222 ML-----VGMVDVIFADVAQPD-------QA------RIVALNAQYFLKNGGHFVISIK 262 (317)
T ss_pred ee-----eeeEEEEeccCCCch-------hh------hhhhhhhhhhhccCCeEEEEEe
Confidence 21 147999999975321 11 2334467889999999998765
No 166
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=98.11 E-value=1.3e-05 Score=67.29 Aligned_cols=134 Identities=19% Similarity=0.215 Sum_probs=80.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-------CCCCceEeecCCCChhhHHHHHHh
Q 025715 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-------PIEGVIQVQGDITNARTAEVVIRH 114 (249)
Q Consensus 42 g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-------~~~~v~~~~gDi~~~~~~~~i~~~ 114 (249)
+.-+||+|||+|--++.+.+- .-..+|||+++-. .+++ ..+.+|+-.-- .
T Consensus 51 ~~~iLDIGCGsGLSg~vL~~~---------------Gh~wiGvDiSpsML~~a~~~e~eg-dlil~DMG~Gl-------p 107 (270)
T KOG1541|consen 51 SGLILDIGCGSGLSGSVLSDS---------------GHQWIGVDISPSMLEQAVERELEG-DLILCDMGEGL-------P 107 (270)
T ss_pred CcEEEEeccCCCcchheeccC---------------CceEEeecCCHHHHHHHHHhhhhc-CeeeeecCCCC-------C
Confidence 568999999999877776642 3578999999832 1222 24455554321 2
Q ss_pred cCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCCCHHHHHH----HHhcCC-CeeEE
Q 025715 115 FDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYC----QLKLFF-PVVTF 189 (249)
Q Consensus 115 ~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~~~l~~----~l~~~f-~~v~~ 189 (249)
|.+++||-|+|-.+.+|.-.-+..-....+-+...+...+.+|++|++.|+..+ +++..++-. .++.-| .-+.+
T Consensus 108 frpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfY-pen~~q~d~i~~~a~~aGF~GGlvV 186 (270)
T KOG1541|consen 108 FRPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFY-PENEAQIDMIMQQAMKAGFGGGLVV 186 (270)
T ss_pred CCCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEec-ccchHHHHHHHHHHHhhccCCceee
Confidence 567899999998766543222111111122234566667889999999999655 344333322 223224 34555
Q ss_pred ecCCCCCCCC
Q 025715 190 AKPKSSRNSS 199 (249)
Q Consensus 190 ~kP~~sr~~s 199 (249)
-.|.+.|...
T Consensus 187 d~Pes~k~kK 196 (270)
T KOG1541|consen 187 DWPESTKNKK 196 (270)
T ss_pred ecccccccce
Confidence 6787766544
No 167
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.11 E-value=2.5e-05 Score=72.66 Aligned_cols=70 Identities=21% Similarity=0.356 Sum_probs=52.2
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhhH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~~ 108 (249)
.++.+|||+|||+|.++..+++.. .+|+|+|+++.. .+.+++++++|+.+. .
T Consensus 291 ~~~~~vLDl~cG~G~~sl~la~~~---------------~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~--l 353 (431)
T TIGR00479 291 QGEELVVDAYCGVGTFTLPLAKQA---------------KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETV--L 353 (431)
T ss_pred CCCCEEEEcCCCcCHHHHHHHHhC---------------CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHH--H
Confidence 467899999999999999998753 589999999842 245788999998542 1
Q ss_pred HHHHHhcCCCcccEEEeCCC
Q 025715 109 EVVIRHFDGCKADLVVCDGA 128 (249)
Q Consensus 109 ~~i~~~~~~~~~DlVlsD~~ 128 (249)
..+ .+...+||+|+.|++
T Consensus 354 ~~~--~~~~~~~D~vi~dPP 371 (431)
T TIGR00479 354 PKQ--PWAGQIPDVLLLDPP 371 (431)
T ss_pred HHH--HhcCCCCCEEEECcC
Confidence 111 122357999999975
No 168
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.09 E-value=5.7e-05 Score=67.46 Aligned_cols=66 Identities=18% Similarity=0.141 Sum_probs=50.3
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhhHH
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTAE 109 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~~~ 109 (249)
++.+|||+|||+|.++..++++ ...|+|+|+++.+ .+.+++++++|+.+..
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~---------------~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~--- 234 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATP---------------GMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFA--- 234 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhc---------------CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHH---
Confidence 4689999999999999999874 2689999999842 2356889999986532
Q ss_pred HHHHhcCCCcccEEEeCCC
Q 025715 110 VVIRHFDGCKADLVVCDGA 128 (249)
Q Consensus 110 ~i~~~~~~~~~DlVlsD~~ 128 (249)
... .+.||+|++|++
T Consensus 235 ---~~~-~~~~D~Vv~dPP 249 (315)
T PRK03522 235 ---TAQ-GEVPDLVLVNPP 249 (315)
T ss_pred ---Hhc-CCCCeEEEECCC
Confidence 111 247999999964
No 169
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=98.08 E-value=9e-06 Score=67.07 Aligned_cols=101 Identities=20% Similarity=0.201 Sum_probs=61.1
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCC-CceEeecCCCChhhH
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIE-GVIQVQGDITNARTA 108 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~-~v~~~~gDi~~~~~~ 108 (249)
.|.+||||+||+|+++..++.|.. .+|+.||.++.. ... .++.+.+|.... .
T Consensus 42 ~g~~vLDLFaGSGalGlEALSRGA--------------~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~--l 105 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSRGA--------------KSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKF--L 105 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHTT---------------SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHH--H
T ss_pred CCCeEEEcCCccCccHHHHHhcCC--------------CeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHH--H
Confidence 678999999999999998888743 699999999743 112 356677775432 1
Q ss_pred HHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHH--HHhccCCCEEEEEEecC
Q 025715 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVV--THVLKEGGKFIAKIFRG 170 (249)
Q Consensus 109 ~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a--~~~Lk~gG~lv~k~~~~ 170 (249)
.+.. -...+||+|+.|++... ... .. ..+... ..+|+++|.+++.....
T Consensus 106 ~~~~--~~~~~fDiIflDPPY~~------~~~-~~----~~l~~l~~~~~l~~~~~ii~E~~~~ 156 (183)
T PF03602_consen 106 LKLA--KKGEKFDIIFLDPPYAK------GLY-YE----ELLELLAENNLLNEDGLIIIEHSKK 156 (183)
T ss_dssp HHHH--HCTS-EEEEEE--STTS------CHH-HH----HHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred Hhhc--ccCCCceEEEECCCccc------chH-HH----HHHHHHHHCCCCCCCEEEEEEecCC
Confidence 1111 14578999999975432 111 11 122222 47999999999976544
No 170
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.07 E-value=2.7e-05 Score=64.00 Aligned_cols=120 Identities=14% Similarity=0.022 Sum_probs=71.0
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CC-CCceEeecCCCChhh
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNART 107 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~-~~v~~~~gDi~~~~~ 107 (249)
+++..|||-.||+|++...++.......+ .. .. ....++|+|+++.. .+ ..+.+.++|+++.+
T Consensus 27 ~~~~~vlDP~CGsGtiliEaa~~~~~~~~-~~--~~-~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~- 101 (179)
T PF01170_consen 27 RPGDVVLDPFCGSGTILIEAALMGANIPP-LN--DI-NELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELP- 101 (179)
T ss_dssp -TTS-EEETT-TTSHHHHHHHHHHTTTST-TT--H--CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGG-
T ss_pred CCCCEEeecCCCCCHHHHHHHHHhhCccc-cc--cc-ccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhcc-
Confidence 67899999999999999887765431100 00 00 01248999999842 12 23677888988764
Q ss_pred HHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCCCHHHH
Q 025715 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLL 176 (249)
Q Consensus 108 ~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~~~l 176 (249)
+..+++|+|++|++. |.+.........++...+..+.++|++ +.++-+.........
T Consensus 102 -------~~~~~~d~IvtnPPy---G~r~~~~~~~~~ly~~~~~~~~~~l~~--~~v~l~~~~~~~~~~ 158 (179)
T PF01170_consen 102 -------LPDGSVDAIVTNPPY---GRRLGSKKDLEKLYRQFLRELKRVLKP--RAVFLTTSNRELEKA 158 (179)
T ss_dssp -------GTTSBSCEEEEE--S---TTSHCHHHHHHHHHHHHHHHHHCHSTT--CEEEEEESCCCHHHH
T ss_pred -------cccCCCCEEEECcch---hhhccCHHHHHHHHHHHHHHHHHHCCC--CEEEEEECCHHHHHH
Confidence 245799999999854 333333344466788889999999999 344334444444433
No 171
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=98.06 E-value=9.7e-06 Score=68.51 Aligned_cols=64 Identities=27% Similarity=0.275 Sum_probs=47.2
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CC-CCceEeecCCCChhh
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNART 107 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~-~~v~~~~gDi~~~~~ 107 (249)
.++.+|||+|||+|.++..+++.. ..|+++|+++.. .. .++.+..+|+..
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~---------------~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~--- 123 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRG---------------AKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLES--- 123 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcC---------------CEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchh---
Confidence 467899999999999999888652 469999998732 11 357788888432
Q ss_pred HHHHHHhcCCCcccEEEeCCCC
Q 025715 108 AEVVIRHFDGCKADLVVCDGAP 129 (249)
Q Consensus 108 ~~~i~~~~~~~~~DlVlsD~~~ 129 (249)
..++||+|++....
T Consensus 124 --------~~~~fD~v~~~~~l 137 (230)
T PRK07580 124 --------LLGRFDTVVCLDVL 137 (230)
T ss_pred --------ccCCcCEEEEcchh
Confidence 13689999986543
No 172
>PLN02823 spermine synthase
Probab=98.06 E-value=9.6e-05 Score=66.59 Aligned_cols=125 Identities=21% Similarity=0.177 Sum_probs=80.9
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC--------C-------CCCceEeecCCCCh
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--------P-------IEGVIQVQGDITNA 105 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~--------~-------~~~v~~~~gDi~~~ 105 (249)
...+||.+|+|.|+.+..+++..+ ..+|+.||+++.. + -++++.+.+|....
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~-------------~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~ 169 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKT-------------VEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAE 169 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCC-------------CCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHH
Confidence 357999999999999887776432 3689999999831 1 24677788887542
Q ss_pred hhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHH-HHHHH-HHHHhccCCCEEEEEEecC------CCHHHHH
Q 025715 106 RTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLI-LAGLT-VVTHVLKEGGKFIAKIFRG------KDTSLLY 177 (249)
Q Consensus 106 ~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~-~~~l~-~a~~~Lk~gG~lv~k~~~~------~~~~~l~ 177 (249)
+. . ..++||+|+.|..-...+. .. ..|. ...++ .+.+.|+|||.+++..-.. .....+.
T Consensus 170 -----L~-~-~~~~yDvIi~D~~dp~~~~---~~---~~Lyt~eF~~~~~~~~L~p~Gvlv~q~~s~~~~~~~~~~~~i~ 236 (336)
T PLN02823 170 -----LE-K-RDEKFDVIIGDLADPVEGG---PC---YQLYTKSFYERIVKPKLNPGGIFVTQAGPAGILTHKEVFSSIY 236 (336)
T ss_pred -----Hh-h-CCCCccEEEecCCCccccC---cc---hhhccHHHHHHHHHHhcCCCcEEEEeccCcchhccHHHHHHHH
Confidence 22 1 2468999999964211110 00 1122 23455 6789999999998754321 1134566
Q ss_pred HHHhcCCCeeEEec
Q 025715 178 CQLKLFFPVVTFAK 191 (249)
Q Consensus 178 ~~l~~~f~~v~~~k 191 (249)
..++..|..|..+.
T Consensus 237 ~tl~~vF~~v~~y~ 250 (336)
T PLN02823 237 NTLRQVFKYVVPYT 250 (336)
T ss_pred HHHHHhCCCEEEEE
Confidence 67778898887754
No 173
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.01 E-value=5.1e-05 Score=61.08 Aligned_cols=107 Identities=20% Similarity=0.214 Sum_probs=78.5
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCC------CCCCCceEeecCCCChhhHHHHHH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM------APIEGVIQVQGDITNARTAEVVIR 113 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~------~~~~~v~~~~gDi~~~~~~~~i~~ 113 (249)
..|..||++|.|+|.++.+++.+.- ....+++++.++. +..+++++++||..+.++. + .
T Consensus 47 esglpVlElGPGTGV~TkaIL~~gv------------~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~--l-~ 111 (194)
T COG3963 47 ESGLPVLELGPGTGVITKAILSRGV------------RPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTT--L-G 111 (194)
T ss_pred ccCCeeEEEcCCccHhHHHHHhcCC------------CccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHH--H-h
Confidence 4678999999999999999988764 4568899999983 3467889999999887632 1 2
Q ss_pred hcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecC
Q 025715 114 HFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRG 170 (249)
Q Consensus 114 ~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~ 170 (249)
...+..||.|+|-... .+..-... .++++.+...|..||.++.-.+.+
T Consensus 112 e~~gq~~D~viS~lPl-----l~~P~~~~----iaile~~~~rl~~gg~lvqftYgp 159 (194)
T COG3963 112 EHKGQFFDSVISGLPL-----LNFPMHRR----IAILESLLYRLPAGGPLVQFTYGP 159 (194)
T ss_pred hcCCCeeeeEEecccc-----ccCcHHHH----HHHHHHHHHhcCCCCeEEEEEecC
Confidence 3456789999996532 22332222 356777888999999999766653
No 174
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=98.01 E-value=3e-05 Score=63.77 Aligned_cols=102 Identities=22% Similarity=0.163 Sum_probs=66.6
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC------------CCCceEeecCCCChhhH
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP------------IEGVIQVQGDITNARTA 108 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~------------~~~v~~~~gDi~~~~~~ 108 (249)
.|.++|||.||+|+...-++.|.. ..++.||.+.... ..+++.+.+|.. ..+
T Consensus 43 ~g~~~LDlFAGSGaLGlEAlSRGA--------------~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~--~~L 106 (187)
T COG0742 43 EGARVLDLFAGSGALGLEALSRGA--------------ARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDAL--RAL 106 (187)
T ss_pred CCCEEEEecCCccHhHHHHHhCCC--------------ceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHH--HHH
Confidence 578999999999999999988853 7999999987421 134666777765 221
Q ss_pred HHHHHhcCC-CcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecC
Q 025715 109 EVVIRHFDG-CKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRG 170 (249)
Q Consensus 109 ~~i~~~~~~-~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~ 170 (249)
+ .... +.||+|+.|+++. .|..+.. + ...+..-..+|+|+|.+++..-..
T Consensus 107 ~----~~~~~~~FDlVflDPPy~-~~l~~~~------~-~~~~~~~~~~L~~~~~iv~E~~~~ 157 (187)
T COG0742 107 K----QLGTREPFDLVFLDPPYA-KGLLDKE------L-ALLLLEENGWLKPGALIVVEHDKD 157 (187)
T ss_pred H----hcCCCCcccEEEeCCCCc-cchhhHH------H-HHHHHHhcCCcCCCcEEEEEeCCC
Confidence 1 2232 2499999998765 2221111 0 011112457899999999965433
No 175
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.00 E-value=1.9e-05 Score=68.58 Aligned_cols=66 Identities=18% Similarity=0.265 Sum_probs=52.2
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC---------CCCCceEeecCCCChhhHHH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------PIEGVIQVQGDITNARTAEV 110 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~---------~~~~v~~~~gDi~~~~~~~~ 110 (249)
.++.+|||+|||+|..+..++++ + .+|+++|+++.. ..++++++++|+.+.+
T Consensus 28 ~~~~~VLEIG~G~G~lt~~L~~~-~--------------~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~---- 88 (258)
T PRK14896 28 TDGDPVLEIGPGKGALTDELAKR-A--------------KKVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVD---- 88 (258)
T ss_pred CCcCeEEEEeCccCHHHHHHHHh-C--------------CEEEEEECCHHHHHHHHHHhccCCCEEEEEeccccCC----
Confidence 57789999999999999999886 3 589999999731 1357889999997643
Q ss_pred HHHhcCCCcccEEEeCCCCC
Q 025715 111 VIRHFDGCKADLVVCDGAPD 130 (249)
Q Consensus 111 i~~~~~~~~~DlVlsD~~~~ 130 (249)
+ ..+|.|++|.+..
T Consensus 89 ----~--~~~d~Vv~NlPy~ 102 (258)
T PRK14896 89 ----L--PEFNKVVSNLPYQ 102 (258)
T ss_pred ----c--hhceEEEEcCCcc
Confidence 1 3479999998654
No 176
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=97.99 E-value=3.4e-05 Score=65.73 Aligned_cols=102 Identities=14% Similarity=0.121 Sum_probs=72.8
Q ss_pred CeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhhHHHH
Q 025715 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTAEVV 111 (249)
Q Consensus 43 ~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~~~~i 111 (249)
..+|++|||.|.|...+|++.+ +..++|||+.... .++|+..+++|... +
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP-------------~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~------~ 110 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNP-------------EKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVE------V 110 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCC-------------CCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHH------H
Confidence 5899999999999999999874 6799999998731 34588888888765 2
Q ss_pred HHhc-CCCcccEEEeCCCCCCCCCCCcCHHHHHHH-HHHHHHHHHHhccCCCEEEEEE
Q 025715 112 IRHF-DGCKADLVVCDGAPDVTGLHDMDEFVQSQL-ILAGLTVVTHVLKEGGKFIAKI 167 (249)
Q Consensus 112 ~~~~-~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l-~~~~l~~a~~~Lk~gG~lv~k~ 167 (249)
.+.+ +++++|-|..+-+-.|.-.+... -++ +...+....+.|+|||.|.+++
T Consensus 111 l~~~~~~~sl~~I~i~FPDPWpKkRH~K----RRl~~~~fl~~~a~~Lk~gG~l~~aT 164 (227)
T COG0220 111 LDYLIPDGSLDKIYINFPDPWPKKRHHK----RRLTQPEFLKLYARKLKPGGVLHFAT 164 (227)
T ss_pred HHhcCCCCCeeEEEEECCCCCCCccccc----cccCCHHHHHHHHHHccCCCEEEEEe
Confidence 3344 44599999877643332221111 122 2456778889999999999875
No 177
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=97.99 E-value=2.7e-05 Score=71.24 Aligned_cols=66 Identities=14% Similarity=0.149 Sum_probs=49.6
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhhHH
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTAE 109 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~~~ 109 (249)
++.+|||||||+|.++..++.+ ...|+|||+++.+ .+.+++++++|+.+..
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~---------------~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~--- 294 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGP---------------DTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFA--- 294 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhc---------------CCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHH---
Confidence 4679999999999999988854 2589999999843 2356888999985431
Q ss_pred HHHHhcCCCcccEEEeCCC
Q 025715 110 VVIRHFDGCKADLVVCDGA 128 (249)
Q Consensus 110 ~i~~~~~~~~~DlVlsD~~ 128 (249)
... ..+||+|+.|++
T Consensus 295 ---~~~-~~~~D~vi~DPP 309 (374)
T TIGR02085 295 ---TAQ-MSAPELVLVNPP 309 (374)
T ss_pred ---Hhc-CCCCCEEEECCC
Confidence 111 246999999975
No 178
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=97.97 E-value=1.4e-05 Score=67.76 Aligned_cols=110 Identities=15% Similarity=0.140 Sum_probs=74.2
Q ss_pred CeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC----------CCCceEeecCCCChhhHHHHH
Q 025715 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----------IEGVIQVQGDITNARTAEVVI 112 (249)
Q Consensus 43 ~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~----------~~~v~~~~gDi~~~~~~~~i~ 112 (249)
.++|.+|||-|.-+.-+.+..+ ++.-.|+++|-+|-+. ..++.....|++.+. +.
T Consensus 73 ~~ilEvGCGvGNtvfPll~~~~-----------n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~----~~ 137 (264)
T KOG2361|consen 73 ETILEVGCGVGNTVFPLLKTSP-----------NNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPS----LK 137 (264)
T ss_pred hhheeeccCCCcccchhhhcCC-----------CCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchh----cc
Confidence 3899999999998887776543 1347999999998531 123444556777654 23
Q ss_pred HhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCCCHHHH
Q 025715 113 RHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLL 176 (249)
Q Consensus 113 ~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~~~l 176 (249)
..+..+++|.|++--..+..+- +. ...++....++|||||.+++.-+...+..++
T Consensus 138 ~~~~~~svD~it~IFvLSAi~p---ek------~~~a~~nl~~llKPGG~llfrDYg~~Dlaql 192 (264)
T KOG2361|consen 138 EPPEEGSVDIITLIFVLSAIHP---EK------MQSVIKNLRTLLKPGGSLLFRDYGRYDLAQL 192 (264)
T ss_pred CCCCcCccceEEEEEEEeccCh---HH------HHHHHHHHHHHhCCCcEEEEeecccchHHHH
Confidence 3456689999887643332111 11 1257788899999999999987765555444
No 179
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=97.95 E-value=1.4e-05 Score=67.82 Aligned_cols=87 Identities=14% Similarity=0.121 Sum_probs=54.7
Q ss_pred eEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----CCCCceE-------eecCCCChhhHHHH
Q 025715 44 RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----PIEGVIQ-------VQGDITNARTAEVV 111 (249)
Q Consensus 44 ~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----~~~~v~~-------~~gDi~~~~~~~~i 111 (249)
..+|+|||+|--+..+++.. -+|+|+|+++.. ..++++. ...+..++.
T Consensus 36 ~a~DvG~G~Gqa~~~iae~~---------------k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~----- 95 (261)
T KOG3010|consen 36 LAWDVGTGNGQAARGIAEHY---------------KEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLL----- 95 (261)
T ss_pred eEEEeccCCCcchHHHHHhh---------------hhheeecCCHHHHHHhhcCCCcccccCCcccccccccccc-----
Confidence 89999999996555666664 489999999732 1222211 112222211
Q ss_pred HHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCC-EEEE
Q 025715 112 IRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGG-KFIA 165 (249)
Q Consensus 112 ~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG-~lv~ 165 (249)
. .++++|+|++--+..+. + +..+...+.++||+.| .+.+
T Consensus 96 -g--~e~SVDlI~~Aqa~HWF-----d-------le~fy~~~~rvLRk~Gg~iav 135 (261)
T KOG3010|consen 96 -G--GEESVDLITAAQAVHWF-----D-------LERFYKEAYRVLRKDGGLIAV 135 (261)
T ss_pred -C--CCcceeeehhhhhHHhh-----c-------hHHHHHHHHHHcCCCCCEEEE
Confidence 0 25799999986544432 2 1357888999999887 4443
No 180
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=97.94 E-value=5.2e-05 Score=67.73 Aligned_cols=62 Identities=19% Similarity=0.141 Sum_probs=45.1
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC---------C-------CCCceEeecCCCC
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------P-------IEGVIQVQGDITN 104 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~---------~-------~~~v~~~~gDi~~ 104 (249)
++.+|||+|||+|.++..++++ + ..|+|+|+++.. . ..++.+..+|+.+
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~-g--------------~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~ 208 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE-G--------------AIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLES 208 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC-C--------------CEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhh
Confidence 5689999999999999999864 3 689999999832 0 1234566666532
Q ss_pred hhhHHHHHHhcCCCcccEEEeCCC
Q 025715 105 ARTAEVVIRHFDGCKADLVVCDGA 128 (249)
Q Consensus 105 ~~~~~~i~~~~~~~~~DlVlsD~~ 128 (249)
+ .++||+|+|...
T Consensus 209 ----------l-~~~fD~Vv~~~v 221 (315)
T PLN02585 209 ----------L-SGKYDTVTCLDV 221 (315)
T ss_pred ----------c-CCCcCEEEEcCE
Confidence 2 368999998643
No 181
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.92 E-value=2e-05 Score=67.69 Aligned_cols=84 Identities=30% Similarity=0.383 Sum_probs=62.6
Q ss_pred chhhhhhHHhhhhhcC-------cccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC---
Q 025715 22 RARSAFKLLQIDEEFN-------IFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP--- 91 (249)
Q Consensus 22 ~~ra~~KL~ei~~~~~-------~~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~--- 91 (249)
.|||.+||.|....|= -+.+|+..+|||++||||+-.+.++ +-.|++||--+|+.
T Consensus 185 PSRStLKLEEA~~tfip~~E~~~rL~~~M~avDLGAcPGGWTyqLVkr---------------~m~V~aVDng~ma~sL~ 249 (358)
T COG2933 185 PSRSTLKLEEAFHTFIPRDEWDKRLAPGMWAVDLGACPGGWTYQLVKR---------------NMRVYAVDNGPMAQSLM 249 (358)
T ss_pred CchhhhhHHHHHHHhcChhhhhhhhcCCceeeecccCCCccchhhhhc---------------ceEEEEeccchhhhhhh
Confidence 6899999998654442 2478999999999999999888765 26999999999874
Q ss_pred -CCCceEeecCCCChhhHHHHHHhcCCCcccEEEeCCC
Q 025715 92 -IEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGA 128 (249)
Q Consensus 92 -~~~v~~~~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~ 128 (249)
-..|+-...|=..... ....+|..+|||.
T Consensus 250 dtg~v~h~r~DGfk~~P--------~r~~idWmVCDmV 279 (358)
T COG2933 250 DTGQVTHLREDGFKFRP--------TRSNIDWMVCDMV 279 (358)
T ss_pred cccceeeeeccCccccc--------CCCCCceEEeehh
Confidence 1245555556554321 2467999999984
No 182
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.91 E-value=8.3e-05 Score=61.61 Aligned_cols=96 Identities=20% Similarity=0.210 Sum_probs=72.7
Q ss_pred ccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC---------CCCCceEeecCCCChhhHH
Q 025715 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------PIEGVIQVQGDITNARTAE 109 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~---------~~~~v~~~~gDi~~~~~~~ 109 (249)
+++|.+||=||+++|.-..+++.-.+ +|.|+||+.++-. ..+|+-.+-+|...++...
T Consensus 74 i~~g~~VLYLGAasGTTvSHVSDIv~-------------~G~iYaVEfs~R~~reLl~~a~~R~Ni~PIL~DA~~P~~Y~ 140 (231)
T COG1889 74 IKEGSKVLYLGAASGTTVSHVSDIVG-------------EGRIYAVEFSPRPMRELLDVAEKRPNIIPILEDARKPEKYR 140 (231)
T ss_pred cCCCCEEEEeeccCCCcHhHHHhccC-------------CCcEEEEEecchhHHHHHHHHHhCCCceeeecccCCcHHhh
Confidence 48899999999999999999998875 5899999999832 2367777889999987544
Q ss_pred HHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEE
Q 025715 110 VVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIA 165 (249)
Q Consensus 110 ~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~ 165 (249)
.+. +.+|+|..|.+- + ++ + +-+...|...||+||.+++
T Consensus 141 ~~V-----e~VDviy~DVAQ-----p--~Q---a---~I~~~Na~~FLk~~G~~~i 178 (231)
T COG1889 141 HLV-----EKVDVIYQDVAQ-----P--NQ---A---EILADNAEFFLKKGGYVVI 178 (231)
T ss_pred hhc-----ccccEEEEecCC-----c--hH---H---HHHHHHHHHhcccCCeEEE
Confidence 332 469999999641 1 11 1 2345677889999996554
No 183
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=97.90 E-value=3e-05 Score=64.78 Aligned_cols=89 Identities=26% Similarity=0.297 Sum_probs=57.9
Q ss_pred ccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCC-CceEeecCCCChh
Q 025715 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIE-GVIQVQGDITNAR 106 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~-~v~~~~gDi~~~~ 106 (249)
+++|.+|+|+.||-|.|+..+++..+ ...|+|+|++|.+ .+. .+..+++|..+..
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~~-------------~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~ 165 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHGK-------------AKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFL 165 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT--------------SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG--
T ss_pred CCcceEEEEccCCccHHHHHHhhhcC-------------ccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhc
Confidence 57899999999999999999987532 4689999999853 123 4677899987632
Q ss_pred hHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEE
Q 025715 107 TAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFI 164 (249)
Q Consensus 107 ~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv 164 (249)
....+|.|+.+.+... ...+..+..++++||.+.
T Consensus 166 ---------~~~~~drvim~lp~~~---------------~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 166 ---------PEGKFDRVIMNLPESS---------------LEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp ----------TT-EEEEEE--TSSG---------------GGGHHHHHHHEEEEEEEE
T ss_pred ---------CccccCEEEECChHHH---------------HHHHHHHHHHhcCCcEEE
Confidence 2478999999864322 124667889999998764
No 184
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=97.88 E-value=2.6e-05 Score=68.28 Aligned_cols=67 Identities=12% Similarity=0.191 Sum_probs=51.3
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC------CC--CCceEeecCCCChhhHHHH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PI--EGVIQVQGDITNARTAEVV 111 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~------~~--~~v~~~~gDi~~~~~~~~i 111 (249)
.++.+|||+|||+|.++..++++. .+|+|+|+++.. .. ++++++++|+.+.+.
T Consensus 41 ~~~~~VLEiG~G~G~lt~~L~~~~---------------~~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~~~---- 101 (272)
T PRK00274 41 QPGDNVLEIGPGLGALTEPLLERA---------------AKVTAVEIDRDLAPILAETFAEDNLTIIEGDALKVDL---- 101 (272)
T ss_pred CCcCeEEEeCCCccHHHHHHHHhC---------------CcEEEEECCHHHHHHHHHhhccCceEEEEChhhcCCH----
Confidence 577899999999999999998873 489999999842 11 578899999987542
Q ss_pred HHhcCCCcccEEEeCCCC
Q 025715 112 IRHFDGCKADLVVCDGAP 129 (249)
Q Consensus 112 ~~~~~~~~~DlVlsD~~~ 129 (249)
.+...|.|++|.+.
T Consensus 102 ----~~~~~~~vv~NlPY 115 (272)
T PRK00274 102 ----SELQPLKVVANLPY 115 (272)
T ss_pred ----HHcCcceEEEeCCc
Confidence 11115899999754
No 185
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=97.88 E-value=2.6e-05 Score=72.89 Aligned_cols=97 Identities=24% Similarity=0.263 Sum_probs=61.5
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC-----------C-CCceEeecCCCChhhH
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP-----------I-EGVIQVQGDITNARTA 108 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~-----------~-~~v~~~~gDi~~~~~~ 108 (249)
++..|+|+|||+|-.+..+++..... +...+|+||+-++.+. . ..|+++++|+.+.+.
T Consensus 186 ~~~vVldVGAGrGpL~~~al~A~~~~---------~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~l- 255 (448)
T PF05185_consen 186 KDKVVLDVGAGRGPLSMFALQAGARA---------GGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVEL- 255 (448)
T ss_dssp TT-EEEEES-TTSHHHHHHHHTTHHH---------CCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCH-
T ss_pred cceEEEEeCCCccHHHHHHHHHHHHh---------CCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCC-
Confidence 35789999999999998765532100 0246999999998531 2 468999999998753
Q ss_pred HHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEE
Q 025715 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFI 164 (249)
Q Consensus 109 ~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv 164 (249)
+.++|+|+|-.- |....++ . .-..|..+.+.|||||.++
T Consensus 256 --------pekvDIIVSElL----Gsfg~nE-l----~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 256 --------PEKVDIIVSELL----GSFGDNE-L----SPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp --------SS-EEEEEE-------BTTBTTT-S----HHHHHHHGGGGEEEEEEEE
T ss_pred --------CCceeEEEEecc----CCccccc-c----CHHHHHHHHhhcCCCCEEe
Confidence 358999999742 2111111 1 1124667788999999887
No 186
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=97.88 E-value=3e-05 Score=69.12 Aligned_cols=95 Identities=20% Similarity=0.277 Sum_probs=66.0
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC----------CCC-ceEeecCCCChhhH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----------IEG-VIQVQGDITNARTA 108 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~----------~~~-v~~~~gDi~~~~~~ 108 (249)
=++..|||+|||+|..|...++.. ..+|+|||-+.+.. +.+ +++++|.+.+.+
T Consensus 59 f~dK~VlDVGcGtGILS~F~akAG--------------A~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi~-- 122 (346)
T KOG1499|consen 59 FKDKTVLDVGCGTGILSMFAAKAG--------------ARKVYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDIE-- 122 (346)
T ss_pred cCCCEEEEcCCCccHHHHHHHHhC--------------cceEEEEechHHHHHHHHHHHhcCccceEEEeecceEEEe--
Confidence 367899999999999999998764 37999999998642 233 677888887753
Q ss_pred HHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEE
Q 025715 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFI 164 (249)
Q Consensus 109 ~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv 164 (249)
++.+++|+|+|. |-|.+-. ...++...|-.=-+.|+|||.+.
T Consensus 123 ------LP~eKVDiIvSE----WMGy~Ll----~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 123 ------LPVEKVDIIVSE----WMGYFLL----YESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred ------cCccceeEEeeh----hhhHHHH----HhhhhhhhhhhhhhccCCCceEc
Confidence 345799999994 3332111 11233334444447999999875
No 187
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=97.86 E-value=0.00012 Score=61.91 Aligned_cols=95 Identities=22% Similarity=0.252 Sum_probs=69.3
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CC-CCceEee-cCCCChh
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQ-GDITNAR 106 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~-~~v~~~~-gDi~~~~ 106 (249)
.+..+||++|++.|.=+..++..++ .+++++.+|+++.. .+ +.+..+. ||..+
T Consensus 58 ~~~k~iLEiGT~~GySal~mA~~l~------------~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~-- 123 (219)
T COG4122 58 SGPKRILEIGTAIGYSALWMALALP------------DDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALD-- 123 (219)
T ss_pred cCCceEEEeecccCHHHHHHHhhCC------------CCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHH--
Confidence 4678999999999999999998886 46899999999842 12 2355555 45433
Q ss_pred hHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEE
Q 025715 107 TAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (249)
Q Consensus 107 ~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k 166 (249)
.+.+ ...++||+|+.|..... +...+..+.++|+|||.+|+-
T Consensus 124 ---~l~~-~~~~~fDliFIDadK~~--------------yp~~le~~~~lLr~GGliv~D 165 (219)
T COG4122 124 ---VLSR-LLDGSFDLVFIDADKAD--------------YPEYLERALPLLRPGGLIVAD 165 (219)
T ss_pred ---HHHh-ccCCCccEEEEeCChhh--------------CHHHHHHHHHHhCCCcEEEEe
Confidence 2332 34589999999974321 124678889999999999964
No 188
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=97.85 E-value=8.9e-05 Score=64.08 Aligned_cols=65 Identities=17% Similarity=0.186 Sum_probs=49.9
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC---------CCCCceEeecCCCChhhHHH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------PIEGVIQVQGDITNARTAEV 110 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~---------~~~~v~~~~gDi~~~~~~~~ 110 (249)
.++.+|||+|||+|.++..++++. ..|+++|+++.. ..++++++++|+.+.+.
T Consensus 28 ~~~~~VLEiG~G~G~lt~~L~~~~---------------~~v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~~--- 89 (253)
T TIGR00755 28 LEGDVVLEIGPGLGALTEPLLKRA---------------KKVTAIEIDPRLAEILRKLLSLYERLEVIEGDALKVDL--- 89 (253)
T ss_pred CCcCEEEEeCCCCCHHHHHHHHhC---------------CcEEEEECCHHHHHHHHHHhCcCCcEEEEECchhcCCh---
Confidence 467899999999999999999875 369999998732 13578889999987542
Q ss_pred HHHhcCCCccc---EEEeCCCC
Q 025715 111 VIRHFDGCKAD---LVVCDGAP 129 (249)
Q Consensus 111 i~~~~~~~~~D---lVlsD~~~ 129 (249)
.++| +|++|.+.
T Consensus 90 -------~~~d~~~~vvsNlPy 104 (253)
T TIGR00755 90 -------PDFPKQLKVVSNLPY 104 (253)
T ss_pred -------hHcCCcceEEEcCCh
Confidence 1344 99998753
No 189
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=97.85 E-value=4.7e-05 Score=69.76 Aligned_cols=89 Identities=20% Similarity=0.165 Sum_probs=63.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhhHHH
Q 025715 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTAEV 110 (249)
Q Consensus 42 g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~~~~ 110 (249)
+.+|||++||+|.++..++...+ ...|+++|+++.+ .+.++++.++|+...
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~-------------~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~----- 119 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETG-------------VEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANAL----- 119 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCC-------------CCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHH-----
Confidence 46999999999999999987653 2589999999843 133455677776432
Q ss_pred HHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEE
Q 025715 111 VIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (249)
Q Consensus 111 i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k 166 (249)
+. . ..+||+|+.|+. |. .. ..+..|.+.+++||.+.++
T Consensus 120 l~-~--~~~fD~V~lDP~----Gs---~~--------~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 120 LH-E--ERKFDVVDIDPF----GS---PA--------PFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred Hh-h--cCCCCEEEECCC----CC---cH--------HHHHHHHHHhcCCCEEEEE
Confidence 11 1 357999999973 22 11 2456667889999999886
No 190
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=97.85 E-value=0.00011 Score=62.78 Aligned_cols=96 Identities=24% Similarity=0.298 Sum_probs=68.2
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC----CCCCceEeecCCCChhhHHHHHHhc
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----PIEGVIQVQGDITNARTAEVVIRHF 115 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~----~~~~v~~~~gDi~~~~~~~~i~~~~ 115 (249)
.+..+|||+|+|.|.++..++++.+ +.+++.+|+-... ..++++++.||+.++ +
T Consensus 99 ~~~~~vvDvGGG~G~~~~~l~~~~P-------------~l~~~v~Dlp~v~~~~~~~~rv~~~~gd~f~~---------~ 156 (241)
T PF00891_consen 99 SGFKTVVDVGGGSGHFAIALARAYP-------------NLRATVFDLPEVIEQAKEADRVEFVPGDFFDP---------L 156 (241)
T ss_dssp TTSSEEEEET-TTSHHHHHHHHHST-------------TSEEEEEE-HHHHCCHHHTTTEEEEES-TTTC---------C
T ss_pred cCccEEEeccCcchHHHHHHHHHCC-------------CCcceeeccHhhhhccccccccccccccHHhh---------h
Confidence 5567999999999999999998875 6789999985432 246899999999853 3
Q ss_pred CCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCC--CEEEEEEe
Q 025715 116 DGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEG--GKFIAKIF 168 (249)
Q Consensus 116 ~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~g--G~lv~k~~ 168 (249)
+ . +|+|+.--.. +++... .+..+|+.+.+.|+|| |++++...
T Consensus 157 P-~-~D~~~l~~vL-----h~~~d~----~~~~iL~~~~~al~pg~~g~llI~e~ 200 (241)
T PF00891_consen 157 P-V-ADVYLLRHVL-----HDWSDE----DCVKILRNAAAALKPGKDGRLLIIEM 200 (241)
T ss_dssp S-S-ESEEEEESSG-----GGS-HH----HHHHHHHHHHHHSEECTTEEEEEEEE
T ss_pred c-c-ccceeeehhh-----hhcchH----HHHHHHHHHHHHhCCCCCCeEEEEee
Confidence 4 3 9999874322 222222 2456788999999999 99987644
No 191
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=97.83 E-value=6e-06 Score=69.59 Aligned_cols=95 Identities=16% Similarity=0.215 Sum_probs=61.7
Q ss_pred CeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC-C---CCc--eEeecCCCChhhHHHHHHhcC
Q 025715 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP-I---EGV--IQVQGDITNARTAEVVIRHFD 116 (249)
Q Consensus 43 ~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~-~---~~v--~~~~gDi~~~~~~~~i~~~~~ 116 (249)
.++||||||||-....+..+. .+++|||||.... . +++ +..++|... .+ +...
T Consensus 127 ~~~lDLGCGTGL~G~~lR~~a---------------~~ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~-----Fl-~~~~ 185 (287)
T COG4976 127 RRMLDLGCGTGLTGEALRDMA---------------DRLTGVDISENMLAKAHEKGLYDTLYVAEAVL-----FL-EDLT 185 (287)
T ss_pred ceeeecccCcCcccHhHHHHH---------------hhccCCchhHHHHHHHHhccchHHHHHHHHHH-----Hh-hhcc
Confidence 689999999999999998775 4889999998431 0 111 011222211 11 1124
Q ss_pred CCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEec
Q 025715 117 GCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFR 169 (249)
Q Consensus 117 ~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~ 169 (249)
.++||+|++-=...+-|. +..++..+..+|+|||.|.+++-+
T Consensus 186 ~er~DLi~AaDVl~YlG~-----------Le~~~~~aa~~L~~gGlfaFSvE~ 227 (287)
T COG4976 186 QERFDLIVAADVLPYLGA-----------LEGLFAGAAGLLAPGGLFAFSVET 227 (287)
T ss_pred CCcccchhhhhHHHhhcc-----------hhhHHHHHHHhcCCCceEEEEecc
Confidence 578999987432222221 245677889999999999987654
No 192
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=97.83 E-value=0.00036 Score=61.35 Aligned_cols=137 Identities=20% Similarity=0.237 Sum_probs=85.7
Q ss_pred CeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC--------------C-CCCceEeecCCCChhh
Q 025715 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--------------P-IEGVIQVQGDITNART 107 (249)
Q Consensus 43 ~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~--------------~-~~~v~~~~gDi~~~~~ 107 (249)
.+||=+|-|.|+++..+++... ..+++.|||++.- . .++++.+.+|..+.
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~-------------ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~-- 142 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLP-------------VERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEF-- 142 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCC-------------cceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHH--
Confidence 5999999999999999988753 4689999999731 1 25666677776442
Q ss_pred HHHHHHhcCCCcccEEEeCCCCCCCCC-CCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecC----CCHHHHHHHHhc
Q 025715 108 AEVVIRHFDGCKADLVVCDGAPDVTGL-HDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRG----KDTSLLYCQLKL 182 (249)
Q Consensus 108 ~~~i~~~~~~~~~DlVlsD~~~~~~g~-~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~----~~~~~l~~~l~~ 182 (249)
+. ... .+||+|+.|..... |. .+.- ....++.+.+.|+++|.++...-.+ +........++.
T Consensus 143 ---v~-~~~-~~fDvIi~D~tdp~-gp~~~Lf-------t~eFy~~~~~~L~~~Gi~v~q~~~~~~~~~~~~~~~~~~~~ 209 (282)
T COG0421 143 ---LR-DCE-EKFDVIIVDSTDPV-GPAEALF-------TEEFYEGCRRALKEDGIFVAQAGSPFLQDEEIALAYRNVSR 209 (282)
T ss_pred ---HH-hCC-CcCCEEEEcCCCCC-CcccccC-------CHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHHh
Confidence 22 223 48999999975432 22 1111 1346788899999999999872221 123345555566
Q ss_pred CCCeeEEe-cCCCCCCCCceEEEEEe
Q 025715 183 FFPVVTFA-KPKSSRNSSIEAFAVCE 207 (249)
Q Consensus 183 ~f~~v~~~-kP~~sr~~s~E~y~v~~ 207 (249)
.|..+..+ .+...-++....+.++-
T Consensus 210 vf~~~~~~~~~ipt~~~g~~~f~~~s 235 (282)
T COG0421 210 VFSIVPPYVAPIPTYPSGFWGFIVAS 235 (282)
T ss_pred hccccccceeccceecCCceEEEEee
Confidence 67665543 12222233334566655
No 193
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=97.82 E-value=0.00012 Score=63.02 Aligned_cols=121 Identities=24% Similarity=0.302 Sum_probs=75.6
Q ss_pred hhHHHHHHhccchhhh---------hhHHhhhhhcCcc--cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCC
Q 025715 11 IYYRKAKEEGWRARSA---------FKLLQIDEEFNIF--EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLP 79 (249)
Q Consensus 11 ~~~~~a~~~~~~~ra~---------~KL~ei~~~~~~~--~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~ 79 (249)
.|+.+....|+..|+. .+|..+.. +..- ....++||||||-|..+..++....
T Consensus 54 ~f~S~T~iNG~LgRG~MFvfS~~Q~~~LL~~~~-~~~~~~~~~~~lLDlGAGdG~VT~~l~~~f~--------------- 117 (265)
T PF05219_consen 54 WFMSKTDINGILGRGSMFVFSEEQFRKLLRISG-FSWNPDWKDKSLLDLGAGDGEVTERLAPLFK--------------- 117 (265)
T ss_pred HHHhHHhHhhhhcCCcEEEecHHHHHHHhhhhc-cCCCCcccCCceEEecCCCcHHHHHHHhhcc---------------
Confidence 3566666777666653 33444321 1111 1356899999999999999988763
Q ss_pred eEEEecCCCCCC----CCCceEeecCCCChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHH
Q 025715 80 LIVAIDLQPMAP----IEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTH 155 (249)
Q Consensus 80 ~vvavDi~~~~~----~~~v~~~~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~ 155 (249)
+|+|-+.++... -.|.+.+ |+.+.. . .+.+||+|.|--..+.. .++ ...|..+.+
T Consensus 118 ~v~aTE~S~~Mr~rL~~kg~~vl--~~~~w~-------~-~~~~fDvIscLNvLDRc----~~P-------~~LL~~i~~ 176 (265)
T PF05219_consen 118 EVYATEASPPMRWRLSKKGFTVL--DIDDWQ-------Q-TDFKFDVISCLNVLDRC----DRP-------LTLLRDIRR 176 (265)
T ss_pred eEEeecCCHHHHHHHHhCCCeEE--ehhhhh-------c-cCCceEEEeehhhhhcc----CCH-------HHHHHHHHH
Confidence 799999997431 2454444 332221 0 24689999884322211 121 246788899
Q ss_pred hccCCCEEEEEEe
Q 025715 156 VLKEGGKFIAKIF 168 (249)
Q Consensus 156 ~Lk~gG~lv~k~~ 168 (249)
.|+|+|.+++.+-
T Consensus 177 ~l~p~G~lilAvV 189 (265)
T PF05219_consen 177 ALKPNGRLILAVV 189 (265)
T ss_pred HhCCCCEEEEEEE
Confidence 9999999998753
No 194
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=97.82 E-value=4.8e-05 Score=67.51 Aligned_cols=93 Identities=19% Similarity=0.275 Sum_probs=65.6
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC-----------CCCceEeecCCCChhhHH
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP-----------IEGVIQVQGDITNARTAE 109 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~-----------~~~v~~~~gDi~~~~~~~ 109 (249)
.+..|||+|||+|..+..+++.. ..+|+||+-+.|+. -+++..+.|-+.+.+
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAG--------------A~~vYAvEAS~MAqyA~~Lv~~N~~~~rItVI~GKiEdie--- 239 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAG--------------AKKVYAVEASEMAQYARKLVASNNLADRITVIPGKIEDIE--- 239 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhC--------------cceEEEEehhHHHHHHHHHHhcCCccceEEEccCcccccc---
Confidence 46799999999999999988763 37999999999863 135677788777643
Q ss_pred HHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEE
Q 025715 110 VVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIA 165 (249)
Q Consensus 110 ~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~ 165 (249)
+ ++++|+|+|.+. |.--.+ + +++ .....|.+.|+|.|.+.=
T Consensus 240 -----L-PEk~DviISEPM----G~mL~N-E---RML-EsYl~Ark~l~P~GkMfP 280 (517)
T KOG1500|consen 240 -----L-PEKVDVIISEPM----GYMLVN-E---RML-ESYLHARKWLKPNGKMFP 280 (517)
T ss_pred -----C-chhccEEEeccc----hhhhhh-H---HHH-HHHHHHHhhcCCCCcccC
Confidence 3 368999999752 111111 1 222 234567799999998763
No 195
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.78 E-value=0.00022 Score=60.23 Aligned_cols=97 Identities=16% Similarity=0.228 Sum_probs=72.2
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC------------CCCceEeecCCCChhhH
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP------------IEGVIQVQGDITNARTA 108 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~------------~~~v~~~~gDi~~~~~~ 108 (249)
...++||||.=+|.=+..++..++ ++|+|+++|+++... ...+++++|+..+ .+
T Consensus 73 ~ak~~lelGvfTGySaL~~Alalp------------~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~e--sL 138 (237)
T KOG1663|consen 73 NAKRTLELGVFTGYSALAVALALP------------EDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALE--SL 138 (237)
T ss_pred CCceEEEEecccCHHHHHHHHhcC------------CCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhh--hH
Confidence 458999999999998888888887 689999999997421 1346778887644 44
Q ss_pred HHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEE
Q 025715 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIA 165 (249)
Q Consensus 109 ~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~ 165 (249)
.++......++||+++.|.- .+.+ ..-.+.+.++||+||.+++
T Consensus 139 d~l~~~~~~~tfDfaFvDad--------K~nY------~~y~e~~l~Llr~GGvi~~ 181 (237)
T KOG1663|consen 139 DELLADGESGTFDFAFVDAD--------KDNY------SNYYERLLRLLRVGGVIVV 181 (237)
T ss_pred HHHHhcCCCCceeEEEEccc--------hHHH------HHHHHHHHhhcccccEEEE
Confidence 45554445689999999851 2221 1346678899999999986
No 196
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=97.77 E-value=1.8e-05 Score=70.22 Aligned_cols=117 Identities=18% Similarity=0.192 Sum_probs=64.3
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC--------CC-----CceEeecCCCChh
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP--------IE-----GVIQVQGDITNAR 106 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~--------~~-----~v~~~~gDi~~~~ 106 (249)
.++.+|+|-|||+|+|...+.+++.... .......++|+|+++... +. ......+|....+
T Consensus 45 ~~~~~VlDPacGsG~fL~~~~~~i~~~~------~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~ 118 (311)
T PF02384_consen 45 KKGDSVLDPACGSGGFLVAAMEYIKEKR------NKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLEND 118 (311)
T ss_dssp -TTEEEEETT-TTSHHHHHHHHHHHTCH------HHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSH
T ss_pred cccceeechhhhHHHHHHHHHHhhcccc------cccccceeEeecCcHHHHHHHHhhhhhhcccccccccccccccccc
Confidence 5678999999999999998887541000 000246899999987421 11 2245677765543
Q ss_pred hHHHHHHhcCCCcccEEEeCCCCCCCCCCCcC----H-H-----HHHHHHHHHHHHHHHhccCCCEEEEEEe
Q 025715 107 TAEVVIRHFDGCKADLVVCDGAPDVTGLHDMD----E-F-----VQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (249)
Q Consensus 107 ~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~----~-~-----~~~~l~~~~l~~a~~~Lk~gG~lv~k~~ 168 (249)
. ......||+|++|+++...+..... . + .....-...+..+.+.|++||++++-+.
T Consensus 119 ~------~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp 184 (311)
T PF02384_consen 119 K------FIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILP 184 (311)
T ss_dssp S------CTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred c------cccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEec
Confidence 1 0124689999999876543110000 0 0 0000112367788999999999887554
No 197
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=97.77 E-value=0.00013 Score=63.06 Aligned_cols=97 Identities=14% Similarity=0.101 Sum_probs=68.8
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------C-CCCceEeecCCCChhhH
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------P-IEGVIQVQGDITNARTA 108 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~-~~~v~~~~gDi~~~~~~ 108 (249)
+..+||++|++.|.=+.+++..++ ++++|+++|.++.. . ..+++++.||..+ .+
T Consensus 79 ~ak~iLEiGT~~GySal~la~al~------------~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e--~L 144 (247)
T PLN02589 79 NAKNTMEIGVYTGYSLLATALALP------------EDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALP--VL 144 (247)
T ss_pred CCCEEEEEeChhhHHHHHHHhhCC------------CCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHH--HH
Confidence 457999999999999998888775 56899999999732 1 2468888898644 33
Q ss_pred HHHHHhc-CCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEE
Q 025715 109 EVVIRHF-DGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIA 165 (249)
Q Consensus 109 ~~i~~~~-~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~ 165 (249)
..+...- ..++||+|+.|+.. .. +..-+..+.++|+|||.+++
T Consensus 145 ~~l~~~~~~~~~fD~iFiDadK--------~~------Y~~y~~~~l~ll~~GGviv~ 188 (247)
T PLN02589 145 DQMIEDGKYHGTFDFIFVDADK--------DN------YINYHKRLIDLVKVGGVIGY 188 (247)
T ss_pred HHHHhccccCCcccEEEecCCH--------HH------hHHHHHHHHHhcCCCeEEEE
Confidence 3332110 12589999999731 11 12345677899999999886
No 198
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.77 E-value=7.4e-05 Score=70.96 Aligned_cols=105 Identities=10% Similarity=0.099 Sum_probs=74.3
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhhH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~~ 108 (249)
..+..+||+|||.|.|+..++...+ +..++|+|+.... .+.|+.++.+|+.
T Consensus 346 ~~~p~~lEIG~G~G~~~~~~A~~~p-------------~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~----- 407 (506)
T PRK01544 346 EKRKVFLEIGFGMGEHFINQAKMNP-------------DALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLD----- 407 (506)
T ss_pred CCCceEEEECCCchHHHHHHHHhCC-------------CCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHH-----
Confidence 4567999999999999999998864 6899999998731 3567777776642
Q ss_pred HHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHH-HHHHHHHHHHhccCCCEEEEEE
Q 025715 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQL-ILAGLTVVTHVLKEGGKFIAKI 167 (249)
Q Consensus 109 ~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l-~~~~l~~a~~~Lk~gG~lv~k~ 167 (249)
.+...+++.++|.|..+-+-+|.-.+.. -.++ ....+....++|+|||.+.+++
T Consensus 408 -~~~~~~~~~sv~~i~i~FPDPWpKkrh~----krRl~~~~fl~~~~~~Lk~gG~i~~~T 462 (506)
T PRK01544 408 -LILNDLPNNSLDGIYILFPDPWIKNKQK----KKRIFNKERLKILQDKLKDNGNLVFAS 462 (506)
T ss_pred -HHHHhcCcccccEEEEECCCCCCCCCCc----cccccCHHHHHHHHHhcCCCCEEEEEc
Confidence 2345577789999988764333211111 1122 2456778889999999999865
No 199
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=97.76 E-value=5.7e-05 Score=66.85 Aligned_cols=67 Identities=16% Similarity=0.283 Sum_probs=52.4
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------C-CCCceEeecCCCChhh
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------P-IEGVIQVQGDITNART 107 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~-~~~v~~~~gDi~~~~~ 107 (249)
.++.+|||+|||+|.++..+++.. .+|+|+|+++.. . .++++++++|+...+
T Consensus 35 ~~~~~VLEIG~G~G~LT~~Ll~~~---------------~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~- 98 (294)
T PTZ00338 35 KPTDTVLEIGPGTGNLTEKLLQLA---------------KKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTE- 98 (294)
T ss_pred CCcCEEEEecCchHHHHHHHHHhC---------------CcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhc-
Confidence 578899999999999999998753 589999999731 1 346889999987632
Q ss_pred HHHHHHhcCCCcccEEEeCCCCCC
Q 025715 108 AEVVIRHFDGCKADLVVCDGAPDV 131 (249)
Q Consensus 108 ~~~i~~~~~~~~~DlVlsD~~~~~ 131 (249)
...+|+|++|++.+.
T Consensus 99 ---------~~~~d~VvaNlPY~I 113 (294)
T PTZ00338 99 ---------FPYFDVCVANVPYQI 113 (294)
T ss_pred ---------ccccCEEEecCCccc
Confidence 236899999986544
No 200
>PRK04148 hypothetical protein; Provisional
Probab=97.75 E-value=0.00022 Score=55.67 Aligned_cols=94 Identities=19% Similarity=0.133 Sum_probs=65.6
Q ss_pred CCCeEEEEcCCCCh-HHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC----CCCceEeecCCCChhhHHHHHHhc
Q 025715 41 GVKRVVDLCAAPGS-WSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----IEGVIQVQGDITNARTAEVVIRHF 115 (249)
Q Consensus 41 ~g~~vLDLG~gpG~-~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~----~~~v~~~~gDi~~~~~~~~i~~~~ 115 (249)
++.++||+|||+|. ++..+++ .+ ..|+|+|+++.+. -.+++++.+|+++++.. +
T Consensus 16 ~~~kileIG~GfG~~vA~~L~~-~G--------------~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~------~ 74 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLKE-SG--------------FDVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLE------I 74 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHHH-CC--------------CEEEEEECCHHHHHHHHHhCCeEEECcCCCCCHH------H
Confidence 45799999999996 7777774 33 6999999999642 13578899999987631 1
Q ss_pred CCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCCC
Q 025715 116 DGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKD 172 (249)
Q Consensus 116 ~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~ 172 (249)
- +.+|+|.|--+| .+|+..+++.|.+ -|..++++.+.++.
T Consensus 75 y-~~a~liysirpp-------------~el~~~~~~la~~---~~~~~~i~~l~~e~ 114 (134)
T PRK04148 75 Y-KNAKLIYSIRPP-------------RDLQPFILELAKK---INVPLIIKPLSGEE 114 (134)
T ss_pred H-hcCCEEEEeCCC-------------HHHHHHHHHHHHH---cCCCEEEEcCCCCC
Confidence 1 579999984322 1344556666654 36778888776654
No 201
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=97.75 E-value=0.00038 Score=59.88 Aligned_cols=103 Identities=15% Similarity=0.149 Sum_probs=69.5
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCCCCCceEeecCCCChhhHHHHHHhcCCCcc
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKA 120 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~~~~v~~~~gDi~~~~~~~~i~~~~~~~~~ 120 (249)
....|.|+|||-+-.++ . ..-.|..+|+-+.. -.++.+|+.+.+ +.++++
T Consensus 180 ~~~vIaD~GCGEakiA~----~--------------~~~kV~SfDL~a~~----~~V~~cDm~~vP--------l~d~sv 229 (325)
T KOG3045|consen 180 KNIVIADFGCGEAKIAS----S--------------ERHKVHSFDLVAVN----ERVIACDMRNVP--------LEDESV 229 (325)
T ss_pred CceEEEecccchhhhhh----c--------------cccceeeeeeecCC----CceeeccccCCc--------CccCcc
Confidence 45689999999988654 1 12578899987643 235678998865 467899
Q ss_pred cEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecC--CCHHHHHHHHhcC-CC
Q 025715 121 DLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRG--KDTSLLYCQLKLF-FP 185 (249)
Q Consensus 121 DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~--~~~~~l~~~l~~~-f~ 185 (249)
|+++.-.+.-.+ + +...+.+|.|+|++||.+.|....+ .+...+...+..+ |.
T Consensus 230 DvaV~CLSLMgt-----n-------~~df~kEa~RiLk~gG~l~IAEv~SRf~dv~~f~r~l~~lGF~ 285 (325)
T KOG3045|consen 230 DVAVFCLSLMGT-----N-------LADFIKEANRILKPGGLLYIAEVKSRFSDVKGFVRALTKLGFD 285 (325)
T ss_pred cEEEeeHhhhcc-----c-------HHHHHHHHHHHhccCceEEEEehhhhcccHHHHHHHHHHcCCe
Confidence 999865433221 1 2357889999999999999866533 3344455545443 54
No 202
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=97.74 E-value=0.00023 Score=63.97 Aligned_cols=95 Identities=26% Similarity=0.340 Sum_probs=70.4
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCC-ceEeecCCCChhh
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEG-VIQVQGDITNART 107 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~-v~~~~gDi~~~~~ 107 (249)
..|.+|||+-||-|.||..+++... ..|+|+|++|.+ .+.+ +..++||......
T Consensus 187 ~~GE~V~DmFAGVGpfsi~~Ak~g~--------------~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~ 252 (341)
T COG2520 187 KEGETVLDMFAGVGPFSIPIAKKGR--------------PKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAP 252 (341)
T ss_pred cCCCEEEEccCCcccchhhhhhcCC--------------ceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhh
Confidence 4699999999999999999987643 449999999953 1334 7788999876421
Q ss_pred HHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCC
Q 025715 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGK 171 (249)
Q Consensus 108 ~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~ 171 (249)
..+.+|.|+.+..... ...+..|.+++++||.+.+-.+.++
T Consensus 253 --------~~~~aDrIim~~p~~a---------------~~fl~~A~~~~k~~g~iHyy~~~~e 293 (341)
T COG2520 253 --------ELGVADRIIMGLPKSA---------------HEFLPLALELLKDGGIIHYYEFVPE 293 (341)
T ss_pred --------ccccCCEEEeCCCCcc---------------hhhHHHHHHHhhcCcEEEEEeccch
Confidence 1167999998764321 1356778899999999988766443
No 203
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=97.71 E-value=6.9e-05 Score=63.79 Aligned_cols=101 Identities=12% Similarity=0.011 Sum_probs=68.3
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC---------------------C--CCce
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP---------------------I--EGVI 96 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~---------------------~--~~v~ 96 (249)
.++.+||+.|||.|--..+++.. | ..|+|+|+++.+. . .+++
T Consensus 42 ~~~~rvLvPgCGkg~D~~~LA~~-G--------------~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~ 106 (226)
T PRK13256 42 NDSSVCLIPMCGCSIDMLFFLSK-G--------------VKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIE 106 (226)
T ss_pred CCCCeEEEeCCCChHHHHHHHhC-C--------------CcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceE
Confidence 45689999999999999999875 3 5899999997420 0 2568
Q ss_pred EeecCCCChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEec
Q 025715 97 QVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFR 169 (249)
Q Consensus 97 ~~~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~ 169 (249)
+.++|+.+..... + ..++||+|.--+++.. ... ++-.+-.....++|+|||.+++.++.
T Consensus 107 ~~~gD~f~l~~~~---~--~~~~fD~VyDra~~~A-----lpp----~~R~~Y~~~l~~lL~pgg~llll~~~ 165 (226)
T PRK13256 107 IYVADIFNLPKIA---N--NLPVFDIWYDRGAYIA-----LPN----DLRTNYAKMMLEVCSNNTQILLLVME 165 (226)
T ss_pred EEEccCcCCCccc---c--ccCCcCeeeeehhHhc-----CCH----HHHHHHHHHHHHHhCCCcEEEEEEEe
Confidence 8899998864200 0 1257999875543321 111 11123455677899999999987773
No 204
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=97.64 E-value=0.00011 Score=62.56 Aligned_cols=34 Identities=18% Similarity=0.374 Sum_probs=30.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCC
Q 025715 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQP 88 (249)
Q Consensus 42 g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~ 88 (249)
+..+||+||..|..|..+++..+ ...|+|+||.+
T Consensus 59 ~~~~LDIGCNsG~lt~~iak~F~-------------~r~iLGvDID~ 92 (288)
T KOG2899|consen 59 PKQALDIGCNSGFLTLSIAKDFG-------------PRRILGVDIDP 92 (288)
T ss_pred cceeEeccCCcchhHHHHHHhhc-------------cceeeEeeccH
Confidence 57999999999999999999886 35799999987
No 205
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.60 E-value=0.00022 Score=56.16 Aligned_cols=89 Identities=21% Similarity=0.235 Sum_probs=63.3
Q ss_pred ccchh---hhhhHHhhhhhcCcccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC-----
Q 025715 20 GWRAR---SAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----- 91 (249)
Q Consensus 20 ~~~~r---a~~KL~ei~~~~~~~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~----- 91 (249)
.|.+| |+.-|.-|.+.|+-+ .|++++|||||.|-.+...+ +. ....|+|+||.|.+.
T Consensus 25 QY~T~p~iAasM~~~Ih~Tygdi-Egkkl~DLgcgcGmLs~a~s--m~------------~~e~vlGfDIdpeALEIf~r 89 (185)
T KOG3420|consen 25 QYPTRPHIAASMLYTIHNTYGDI-EGKKLKDLGCGCGMLSIAFS--MP------------KNESVLGFDIDPEALEIFTR 89 (185)
T ss_pred hCCCcHHHHHHHHHHHHhhhccc-cCcchhhhcCchhhhHHHhh--cC------------CCceEEeeecCHHHHHHHhh
Confidence 35555 355666777777744 46899999999999884433 23 246899999998541
Q ss_pred ----C-CCceEeecCCCChhhHHHHHHhcCCCcccEEEeCCCCCC
Q 025715 92 ----I-EGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDV 131 (249)
Q Consensus 92 ----~-~~v~~~~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~~~~ 131 (249)
. -++.++++|+.++. +..+.||.++-|+.+..
T Consensus 90 NaeEfEvqidlLqcdildle--------~~~g~fDtaviNppFGT 126 (185)
T KOG3420|consen 90 NAEEFEVQIDLLQCDILDLE--------LKGGIFDTAVINPPFGT 126 (185)
T ss_pred chHHhhhhhheeeeeccchh--------ccCCeEeeEEecCCCCc
Confidence 1 14567899998865 34588999999987654
No 206
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=97.57 E-value=0.0009 Score=54.58 Aligned_cols=116 Identities=20% Similarity=0.168 Sum_probs=62.5
Q ss_pred ccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC-------------CCCceEeecCCCCh
Q 025715 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP-------------IEGVIQVQGDITNA 105 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~-------------~~~v~~~~gDi~~~ 105 (249)
..++.+||+||||+|--+.+++...+ ...|+.-|..+... ...+++...|..+.
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~~-------------~~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~ 109 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLFG-------------AARVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDE 109 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT-T--------------SEEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-
T ss_pred hcCCceEEEECCccchhHHHHHhccC-------------CceEEEeccchhhHHHHHHHHhccccccccccCcEEEecCc
Confidence 35778999999999988888887633 47899999887211 12355555566542
Q ss_pred hhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEe-cCCCHHHHHHHHhc
Q 025715 106 RTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF-RGKDTSLLYCQLKL 182 (249)
Q Consensus 106 ~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~-~~~~~~~l~~~l~~ 182 (249)
.. .+.+...+||+|++- ++. ++. ++....+....++|+++|.+++..- +......++..+++
T Consensus 110 ~~----~~~~~~~~~D~Ilas---Dv~--Y~~------~~~~~L~~tl~~ll~~~~~vl~~~~~R~~~~~~F~~~~~k 172 (173)
T PF10294_consen 110 LD----SDLLEPHSFDVILAS---DVL--YDE------ELFEPLVRTLKRLLKPNGKVLLAYKRRRKSEQEFFDRLKK 172 (173)
T ss_dssp HH----HHHHS-SSBSEEEEE---S----S-G------GGHHHHHHHHHHHBTT-TTEEEEEE-S-TGGCHHHHHH--
T ss_pred cc----ccccccccCCEEEEe---ccc--chH------HHHHHHHHHHHHHhCCCCEEEEEeCEecHHHHHHHHHhhh
Confidence 21 122345689999762 221 111 1234566677889999999666433 33345566665543
No 207
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=97.56 E-value=0.00012 Score=60.16 Aligned_cols=89 Identities=24% Similarity=0.275 Sum_probs=64.8
Q ss_pred CCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhhHHH
Q 025715 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTAEV 110 (249)
Q Consensus 42 g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~~~~ 110 (249)
...+.|||+|+|..+..+++.. -+|+|++.+|.. ...+++.+.||..+.+
T Consensus 33 ~d~~~DLGaGsGiLs~~Aa~~A---------------~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~---- 93 (252)
T COG4076 33 EDTFADLGAGSGILSVVAAHAA---------------ERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYD---- 93 (252)
T ss_pred hhceeeccCCcchHHHHHHhhh---------------ceEEEEecCcHHHHHhhhcCCCCCCcceEEEeccccccc----
Confidence 3699999999999999998863 599999999853 1246788899988754
Q ss_pred HHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEE
Q 025715 111 VIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFI 164 (249)
Q Consensus 111 i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv 164 (249)
| +..|+|+|-|- |.....+-+-..+..+.+.||..++++
T Consensus 94 ----f--e~ADvvicEml---------DTaLi~E~qVpV~n~vleFLr~d~tii 132 (252)
T COG4076 94 ----F--ENADVVICEML---------DTALIEEKQVPVINAVLEFLRYDPTII 132 (252)
T ss_pred ----c--cccceeHHHHh---------hHHhhcccccHHHHHHHHHhhcCCccc
Confidence 2 46899998762 222111122345677778999999876
No 208
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=97.54 E-value=0.00029 Score=59.70 Aligned_cols=119 Identities=18% Similarity=0.078 Sum_probs=73.8
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC--------C---------------CCCce
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--------P---------------IEGVI 96 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~--------~---------------~~~v~ 96 (249)
.++.+||..|||.|.-..+++++ | ..|+|+|+++.+ . ..+++
T Consensus 36 ~~~~rvLvPgCG~g~D~~~La~~-G--------------~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~ 100 (218)
T PF05724_consen 36 KPGGRVLVPGCGKGYDMLWLAEQ-G--------------HDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRIT 100 (218)
T ss_dssp STSEEEEETTTTTSCHHHHHHHT-T--------------EEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEE
T ss_pred CCCCeEEEeCCCChHHHHHHHHC-C--------------CeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceE
Confidence 56789999999999999999875 3 699999999732 0 12467
Q ss_pred EeecCCCChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEE--EEEEec-----
Q 025715 97 QVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKF--IAKIFR----- 169 (249)
Q Consensus 97 ~~~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~l--v~k~~~----- 169 (249)
+++||+.+.... ..++||+|.=-+++-.-.. ... .+=.....++|+|||.+ ++-.+.
T Consensus 101 ~~~gDfF~l~~~-------~~g~fD~iyDr~~l~Alpp--~~R-------~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~ 164 (218)
T PF05724_consen 101 IYCGDFFELPPE-------DVGKFDLIYDRTFLCALPP--EMR-------ERYAQQLASLLKPGGRGLLITLEYPQGEME 164 (218)
T ss_dssp EEES-TTTGGGS-------CHHSEEEEEECSSTTTS-G--GGH-------HHHHHHHHHCEEEEEEEEEEEEES-CSCSS
T ss_pred EEEcccccCChh-------hcCCceEEEEecccccCCH--HHH-------HHHHHHHHHHhCCCCcEEEEEEEcCCcCCC
Confidence 889999986521 1247999986554322110 011 12345567899999993 332222
Q ss_pred CC----CHHHHHHHHhcCCCeeEE
Q 025715 170 GK----DTSLLYCQLKLFFPVVTF 189 (249)
Q Consensus 170 ~~----~~~~l~~~l~~~f~~v~~ 189 (249)
++ ...++..++...|+-..+
T Consensus 165 GPPf~v~~~ev~~l~~~~f~i~~l 188 (218)
T PF05724_consen 165 GPPFSVTEEEVRELFGPGFEIEEL 188 (218)
T ss_dssp SSS----HHHHHHHHTTTEEEEEE
T ss_pred CcCCCCCHHHHHHHhcCCcEEEEE
Confidence 11 245666777766654443
No 209
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=97.54 E-value=0.00047 Score=59.62 Aligned_cols=92 Identities=17% Similarity=0.224 Sum_probs=67.5
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CC-CCceEeecCCCChhh
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNART 107 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~-~~v~~~~gDi~~~~~ 107 (249)
+||.+|++-|+|+|++|.++++.++ +.|+++.+|.-..+ .+ .+|++..-|+...-.
T Consensus 104 ~PGsvV~EsGTGSGSlShaiaraV~------------ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF 171 (314)
T KOG2915|consen 104 RPGSVVLESGTGSGSLSHAIARAVA------------PTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGF 171 (314)
T ss_pred CCCCEEEecCCCcchHHHHHHHhhC------------cCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCc
Confidence 7999999999999999999999987 67999999996532 12 468888888876432
Q ss_pred HHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEE
Q 025715 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIA 165 (249)
Q Consensus 108 ~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~ 165 (249)
. .....+|.|..|+.-.+ .++-.+..+||.+|.-+|
T Consensus 172 ~------~ks~~aDaVFLDlPaPw----------------~AiPha~~~lk~~g~r~c 207 (314)
T KOG2915|consen 172 L------IKSLKADAVFLDLPAPW----------------EAIPHAAKILKDEGGRLC 207 (314)
T ss_pred c------ccccccceEEEcCCChh----------------hhhhhhHHHhhhcCceEE
Confidence 1 12467999999984322 133445668888875444
No 210
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=97.51 E-value=0.0015 Score=59.50 Aligned_cols=69 Identities=12% Similarity=0.213 Sum_probs=49.1
Q ss_pred CeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhhHHHH
Q 025715 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTAEVV 111 (249)
Q Consensus 43 ~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~~~~i 111 (249)
.+||||+||+|.++..+++.. .+|+|||+++.+ .+.+++++.+|+.+. ++.+
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~---------------~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~--l~~~ 270 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNF---------------RRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEF--TQAM 270 (362)
T ss_pred CeEEEEeccccHHHHHHHhhC---------------CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHH--HHHH
Confidence 579999999999999888653 489999999842 245788999998553 1222
Q ss_pred HHhc----------CCCcccEEEeCCC
Q 025715 112 IRHF----------DGCKADLVVCDGA 128 (249)
Q Consensus 112 ~~~~----------~~~~~DlVlsD~~ 128 (249)
...- ...+||+|+.|++
T Consensus 271 ~~~~~~~~~~~~~~~~~~~D~v~lDPP 297 (362)
T PRK05031 271 NGVREFNRLKGIDLKSYNFSTIFVDPP 297 (362)
T ss_pred hhcccccccccccccCCCCCEEEECCC
Confidence 1100 0225899999985
No 211
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=97.47 E-value=0.0015 Score=55.12 Aligned_cols=87 Identities=23% Similarity=0.242 Sum_probs=62.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhhHHH
Q 025715 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTAEV 110 (249)
Q Consensus 42 g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~~~~ 110 (249)
+.+++|+|+|+|-=+.-++=.. ++.+|+-+|-..-+ .++|++++++.+.+..
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~-------------p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~---- 130 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAF-------------PDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFG---- 130 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhc-------------cCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcc----
Confidence 5899999999998777776333 35679999987643 3578888888776532
Q ss_pred HHHhcCCCc-ccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEE
Q 025715 111 VIRHFDGCK-ADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIA 165 (249)
Q Consensus 111 i~~~~~~~~-~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~ 165 (249)
.... ||+|+|-+.-+ ....++.+..++|+||.++.
T Consensus 131 -----~~~~~~D~vtsRAva~---------------L~~l~e~~~pllk~~g~~~~ 166 (215)
T COG0357 131 -----QEKKQYDVVTSRAVAS---------------LNVLLELCLPLLKVGGGFLA 166 (215)
T ss_pred -----cccccCcEEEeehccc---------------hHHHHHHHHHhcccCCcchh
Confidence 1123 99999975311 12357788999999998763
No 212
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=97.45 E-value=0.0029 Score=56.24 Aligned_cols=80 Identities=19% Similarity=0.194 Sum_probs=57.9
Q ss_pred hhhhhcCcccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC---------CC-CCceEeec
Q 025715 31 QIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------PI-EGVIQVQG 100 (249)
Q Consensus 31 ei~~~~~~~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~---------~~-~~v~~~~g 100 (249)
|+.+.+. .++|..++|.=+|-||-|..+++.++ .++|+|+|.++.+ .. .+++++++
T Consensus 11 Evl~~L~-~~~ggiyVD~TlG~GGHS~~iL~~l~-------------~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~ 76 (305)
T TIGR00006 11 EVVEGLN-IKPDGIYIDCTLGFGGHSKAILEQLG-------------TGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHD 76 (305)
T ss_pred HHHHhcC-cCCCCEEEEeCCCChHHHHHHHHhCC-------------CCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeC
Confidence 4444443 25778999999999999999998875 3899999999843 11 36888888
Q ss_pred CCCChhhHHHHHHhcCCCcccEEEeCC
Q 025715 101 DITNARTAEVVIRHFDGCKADLVVCDG 127 (249)
Q Consensus 101 Di~~~~~~~~i~~~~~~~~~DlVlsD~ 127 (249)
+..+.. .+....+..++|.|+.|.
T Consensus 77 nF~~l~---~~l~~~~~~~vDgIl~DL 100 (305)
T TIGR00006 77 NFANFF---EHLDELLVTKIDGILVDL 100 (305)
T ss_pred CHHHHH---HHHHhcCCCcccEEEEec
Confidence 877643 222233446799999995
No 213
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=97.45 E-value=0.001 Score=57.43 Aligned_cols=124 Identities=16% Similarity=0.121 Sum_probs=79.4
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC---------------CCCCceEeecCCCCh
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------------PIEGVIQVQGDITNA 105 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~---------------~~~~v~~~~gDi~~~ 105 (249)
...+||=||-|-|+.+..+.+.- +..+|+.||+++.. .-++++.+.+|...
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~-------------~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~- 141 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHP-------------PVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRK- 141 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTST-------------T-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHH-
T ss_pred CcCceEEEcCCChhhhhhhhhcC-------------CcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHH-
Confidence 46899999999999988887543 24689999999831 12577888888643
Q ss_pred hhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCCC----HHHHHHHHh
Q 025715 106 RTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKD----TSLLYCQLK 181 (249)
Q Consensus 106 ~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~----~~~l~~~l~ 181 (249)
.+.+ ...++||+|+.|.......... -.....++.+.+.|+|||.+++..-.... ...+...++
T Consensus 142 ----~l~~-~~~~~yDvIi~D~~dp~~~~~~-------l~t~ef~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~~i~~tl~ 209 (246)
T PF01564_consen 142 ----FLKE-TQEEKYDVIIVDLTDPDGPAPN-------LFTREFYQLCKRRLKPDGVLVLQAGSPFLHPELFKSILKTLR 209 (246)
T ss_dssp ----HHHT-SSST-EEEEEEESSSTTSCGGG-------GSSHHHHHHHHHHEEEEEEEEEEEEETTTTHHHHHHHHHHHH
T ss_pred ----HHHh-ccCCcccEEEEeCCCCCCCccc-------ccCHHHHHHHHhhcCCCcEEEEEccCcccchHHHHHHHHHHH
Confidence 2222 2222899999997532111000 01135678899999999999987643322 334556677
Q ss_pred cCCCeeEEe
Q 025715 182 LFFPVVTFA 190 (249)
Q Consensus 182 ~~f~~v~~~ 190 (249)
..|..+..+
T Consensus 210 ~~F~~v~~~ 218 (246)
T PF01564_consen 210 SVFPQVKPY 218 (246)
T ss_dssp TTSSEEEEE
T ss_pred HhCCceEEE
Confidence 888876653
No 214
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=97.45 E-value=0.0013 Score=59.76 Aligned_cols=70 Identities=13% Similarity=0.261 Sum_probs=49.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhhHHH
Q 025715 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTAEV 110 (249)
Q Consensus 42 g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~~~~ 110 (249)
+.+|||||||+|.++..+++.. .+|+|||+++.+ .+.+++++++|+.+.- ..
T Consensus 198 ~~~vlDl~~G~G~~sl~la~~~---------------~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~--~~ 260 (353)
T TIGR02143 198 KGDLLELYCGNGNFSLALAQNF---------------RRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFT--QA 260 (353)
T ss_pred CCcEEEEeccccHHHHHHHHhC---------------CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHH--HH
Confidence 3479999999999999888653 489999999742 2457889999986532 11
Q ss_pred HHH--hc---C-----CCcccEEEeCCC
Q 025715 111 VIR--HF---D-----GCKADLVVCDGA 128 (249)
Q Consensus 111 i~~--~~---~-----~~~~DlVlsD~~ 128 (249)
... .+ . ...+|+|+.|++
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~d~v~lDPP 288 (353)
T TIGR02143 261 MNGVREFRRLKGIDLKSYNCSTIFVDPP 288 (353)
T ss_pred HhhccccccccccccccCCCCEEEECCC
Confidence 100 01 1 124899999985
No 215
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=97.44 E-value=0.00043 Score=63.29 Aligned_cols=91 Identities=15% Similarity=0.135 Sum_probs=64.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhhHHH
Q 025715 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTAEV 110 (249)
Q Consensus 42 g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~~~~ 110 (249)
+.+|||+.||+|..+..++.+.+ ...+|+++|+++.+ ...+++++++|....
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~------------ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~----- 107 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIE------------GVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANV----- 107 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCC------------CCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHH-----
Confidence 35899999999999999988753 13589999999843 123466777776542
Q ss_pred HHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEE
Q 025715 111 VIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (249)
Q Consensus 111 i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k 166 (249)
+. .. ..+||+|..|+ +. . .. ..+..+.+.+++||.+.++
T Consensus 108 l~-~~-~~~fDvIdlDP-fG---s--~~---------~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 108 LR-YR-NRKFHVIDIDP-FG---T--PA---------PFVDSAIQASAERGLLLVT 146 (374)
T ss_pred HH-Hh-CCCCCEEEeCC-CC---C--cH---------HHHHHHHHhcccCCEEEEE
Confidence 11 11 35799999998 32 1 11 2566788899999999886
No 216
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=97.43 E-value=0.0024 Score=56.01 Aligned_cols=116 Identities=20% Similarity=0.234 Sum_probs=76.6
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCc-eEeecCCCChhhH
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGV-IQVQGDITNARTA 108 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v-~~~~gDi~~~~~~ 108 (249)
..-+|||++||+|....-+....+. ..-.|.-.|.++.. .+.++ +|.++|..+.+..
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~-----------~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l 203 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPE-----------RPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSL 203 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCC-----------CCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHh
Confidence 3469999999999988777766541 12478889999842 25565 8999999997654
Q ss_pred HHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCC--CHHHHHHHHh
Q 025715 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGK--DTSLLYCQLK 181 (249)
Q Consensus 109 ~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~--~~~~l~~~l~ 181 (249)
+.+ . ...++++.-|-.... .| .+++...+.-...++.|||.++.+ -++. ....|...|.
T Consensus 204 ~~l----~-p~P~l~iVsGL~ElF----~D----n~lv~~sl~gl~~al~pgG~lIyT-gQPwHPQle~IAr~Lt 264 (311)
T PF12147_consen 204 AAL----D-PAPTLAIVSGLYELF----PD----NDLVRRSLAGLARALEPGGYLIYT-GQPWHPQLEMIARVLT 264 (311)
T ss_pred hcc----C-CCCCEEEEecchhhC----Cc----HHHHHHHHHHHHHHhCCCcEEEEc-CCCCCcchHHHHHHHh
Confidence 332 2 467898876533221 12 234556677788899999999984 4333 3333444443
No 217
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=97.38 E-value=8.9e-05 Score=59.90 Aligned_cols=114 Identities=17% Similarity=0.200 Sum_probs=58.9
Q ss_pred CeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC--------C----CCCceEeecCCCChhhHHH
Q 025715 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--------P----IEGVIQVQGDITNARTAEV 110 (249)
Q Consensus 43 ~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~--------~----~~~v~~~~gDi~~~~~~~~ 110 (249)
..|+|++||-||-+...++.. .+|+|+|+++.+ . ..++.+++||+.+..
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~---------------~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~---- 61 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTF---------------DRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELL---- 61 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT----------------EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHG----
T ss_pred CEEEEeccCcCHHHHHHHHhC---------------CeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHH----
Confidence 379999999999999999864 489999999853 1 236889999987632
Q ss_pred HHHhcCCCc-ccEEEeCCC---CCCCCCCCcCH-HHHHHH-HHHHHHHHHHhccCCCEEEEEEecCCCHHHHHHHH
Q 025715 111 VIRHFDGCK-ADLVVCDGA---PDVTGLHDMDE-FVQSQL-ILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQL 180 (249)
Q Consensus 111 i~~~~~~~~-~DlVlsD~~---~~~~g~~~~~~-~~~~~l-~~~~l~~a~~~Lk~gG~lv~k~~~~~~~~~l~~~l 180 (249)
..+.... +|+|+.+++ |++......+- .....+ ....+..+.++ -..+++.+-+..+..++..+.
T Consensus 62 --~~~~~~~~~D~vFlSPPWGGp~Y~~~~~fdL~~~~~p~~~~~l~~~~~~~---t~nv~l~LPRn~dl~ql~~~~ 132 (163)
T PF09445_consen 62 --KRLKSNKIFDVVFLSPPWGGPSYSKKDVFDLEKSMQPFNLEDLLKAARKI---TPNVVLFLPRNSDLNQLSQLT 132 (163)
T ss_dssp --GGB------SEEEE---BSSGGGGGSSSB-TTTSSSS--HHHHHHHHHHH----S-EEEEEETTB-HHHHHHT-
T ss_pred --hhccccccccEEEECCCCCCccccccCccCHHHccCCCCHHHHHHHHHhh---CCCEEEEeCCCCCHHHHHHHh
Confidence 2232222 899998852 22221111111 000000 12233333322 344666666777777776654
No 218
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.31 E-value=0.0021 Score=59.88 Aligned_cols=123 Identities=22% Similarity=0.275 Sum_probs=76.7
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhhH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~~ 108 (249)
.++++++||=||.|.|+..++++. .+|+|+|+++.+ .+.|+++..+|..+...
T Consensus 292 ~~~~~vlDlYCGvG~f~l~lA~~~---------------~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~- 355 (432)
T COG2265 292 AGGERVLDLYCGVGTFGLPLAKRV---------------KKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTP- 355 (432)
T ss_pred cCCCEEEEeccCCChhhhhhcccC---------------CEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhh-
Confidence 467899999999999999999654 699999999843 25678888888765321
Q ss_pred HHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCCCHHHHHHHHh-cC--CC
Q 025715 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLK-LF--FP 185 (249)
Q Consensus 109 ~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~~~l~~~l~-~~--f~ 185 (249)
.......+|.|+.|++ ..|. ++ .++.. ..-++|-..+.+ .+.+.+...=+..|. .. -+
T Consensus 356 ----~~~~~~~~d~VvvDPP--R~G~---~~--------~~lk~-l~~~~p~~IvYV-SCNP~TlaRDl~~L~~~gy~i~ 416 (432)
T COG2265 356 ----AWWEGYKPDVVVVDPP--RAGA---DR--------EVLKQ-LAKLKPKRIVYV-SCNPATLARDLAILASTGYEIE 416 (432)
T ss_pred ----hccccCCCCEEEECCC--CCCC---CH--------HHHHH-HHhcCCCcEEEE-eCCHHHHHHHHHHHHhCCeEEE
Confidence 1113457999999974 3443 21 12222 345666666666 455555443333333 22 34
Q ss_pred eeEEec--CCCCCC
Q 025715 186 VVTFAK--PKSSRN 197 (249)
Q Consensus 186 ~v~~~k--P~~sr~ 197 (249)
+++.+- |.+++-
T Consensus 417 ~v~~~DmFP~T~Hv 430 (432)
T COG2265 417 RVQPFDMFPHTHHV 430 (432)
T ss_pred EEEEeccCCCcccc
Confidence 444432 666653
No 219
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=97.29 E-value=0.0021 Score=54.02 Aligned_cols=105 Identities=20% Similarity=0.206 Sum_probs=58.0
Q ss_pred HHhhhhhcCcccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC------------------
Q 025715 29 LLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------------------ 90 (249)
Q Consensus 29 L~ei~~~~~~~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~------------------ 90 (249)
+.+|.++.+ +.++..++|||||.|.....++...+ -.+.+||++.+..
T Consensus 31 ~~~il~~~~-l~~~dvF~DlGSG~G~~v~~aal~~~-------------~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~ 96 (205)
T PF08123_consen 31 VSKILDELN-LTPDDVFYDLGSGVGNVVFQAALQTG-------------CKKSVGIEILPELHDLAEELLEELKKRMKHY 96 (205)
T ss_dssp HHHHHHHTT---TT-EEEEES-TTSHHHHHHHHHH---------------SEEEEEE-SHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhC-CCCCCEEEECCCCCCHHHHHHHHHcC-------------CcEEEEEEechHHHHHHHHHHHHHHHHHHHh
Confidence 334445555 47889999999999999887776554 2469999999731
Q ss_pred --CCCCceEeecCCCChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEE
Q 025715 91 --PIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFI 164 (249)
Q Consensus 91 --~~~~v~~~~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv 164 (249)
....+.+.+||+.+.+....+. ...|+|++|-.. .++... ..+.....-||+|-.+|
T Consensus 97 g~~~~~v~l~~gdfl~~~~~~~~~-----s~AdvVf~Nn~~-------F~~~l~-----~~L~~~~~~lk~G~~II 155 (205)
T PF08123_consen 97 GKRPGKVELIHGDFLDPDFVKDIW-----SDADVVFVNNTC-------FDPDLN-----LALAELLLELKPGARII 155 (205)
T ss_dssp TB---EEEEECS-TTTHHHHHHHG-----HC-SEEEE--TT-------T-HHHH-----HHHHHHHTTS-TT-EEE
T ss_pred hcccccceeeccCccccHhHhhhh-----cCCCEEEEeccc-------cCHHHH-----HHHHHHHhcCCCCCEEE
Confidence 0124677899999876544432 258999998521 233221 23344456678776655
No 220
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=97.24 E-value=0.0016 Score=54.47 Aligned_cols=104 Identities=19% Similarity=0.228 Sum_probs=60.4
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCC--C---C-C----CCCceEeecCCCChhhHH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQP--M---A-P----IEGVIQVQGDITNARTAE 109 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~--~---~-~----~~~v~~~~gDi~~~~~~~ 109 (249)
+| ..++++|..-||=+...+..+... +..++|++||+.. . + . .+++++++||..+++...
T Consensus 32 kP-d~IIE~Gi~~GGSli~~A~ml~~~---------~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~~~~~ 101 (206)
T PF04989_consen 32 KP-DLIIETGIAHGGSLIFWASMLELL---------GGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDPEIVD 101 (206)
T ss_dssp ---SEEEEE--TTSHHHHHHHHHHHHT---------T---EEEEEES-GTT--S-GGGG----TTEEEEES-SSSTHHHH
T ss_pred CC-CeEEEEecCCCchHHHHHHHHHHh---------CCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCCHHHHH
Confidence 55 799999999999887766544211 1468999999942 1 1 1 268999999999998876
Q ss_pred HHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEE
Q 025715 110 VVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIA 165 (249)
Q Consensus 110 ~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~ 165 (249)
++..........+|+-|..-. .++ ..+.|+.-..++++|+.+|+
T Consensus 102 ~v~~~~~~~~~vlVilDs~H~------~~h------vl~eL~~y~plv~~G~Y~IV 145 (206)
T PF04989_consen 102 QVRELASPPHPVLVILDSSHT------HEH------VLAELEAYAPLVSPGSYLIV 145 (206)
T ss_dssp TSGSS----SSEEEEESS----------SS------HHHHHHHHHHT--TT-EEEE
T ss_pred HHHHhhccCCceEEEECCCcc------HHH------HHHHHHHhCccCCCCCEEEE
Confidence 654433345667999887411 121 13456677789999999997
No 221
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=97.23 E-value=0.00059 Score=56.30 Aligned_cols=85 Identities=16% Similarity=0.157 Sum_probs=61.4
Q ss_pred eEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhhHHHHH
Q 025715 44 RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTAEVVI 112 (249)
Q Consensus 44 ~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~~~~i~ 112 (249)
+++|+|+|.|-=...++=..+ +.+++.+|-..-+ .++|++++++.+.+.
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p-------------~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~------- 110 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARP-------------DLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEEP------- 110 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-T-------------TSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHHT-------
T ss_pred eEEecCCCCCChhHHHHHhCC-------------CCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeeccc-------
Confidence 899999999987777765553 6899999988632 367898888877551
Q ss_pred HhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEE
Q 025715 113 RHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIA 165 (249)
Q Consensus 113 ~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~ 165 (249)
....+||+|+|-+.-. ....+..+..+|++||.+++
T Consensus 111 --~~~~~fd~v~aRAv~~---------------l~~l~~~~~~~l~~~G~~l~ 146 (184)
T PF02527_consen 111 --EYRESFDVVTARAVAP---------------LDKLLELARPLLKPGGRLLA 146 (184)
T ss_dssp --TTTT-EEEEEEESSSS---------------HHHHHHHHGGGEEEEEEEEE
T ss_pred --ccCCCccEEEeehhcC---------------HHHHHHHHHHhcCCCCEEEE
Confidence 1347899999976321 12467888999999999885
No 222
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=97.23 E-value=0.00041 Score=64.70 Aligned_cols=107 Identities=21% Similarity=0.287 Sum_probs=60.4
Q ss_pred HHhhhhhcCcc-cC--CCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC--------C-CCce
Q 025715 29 LLQIDEEFNIF-EG--VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP--------I-EGVI 96 (249)
Q Consensus 29 L~ei~~~~~~~-~~--g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~--------~-~~v~ 96 (249)
+-+|.+..+.. .. -..+||+|||.|+|+.++.++ .|+.+.+.+... + .|+-
T Consensus 102 id~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r-----------------~V~t~s~a~~d~~~~qvqfaleRGvp 164 (506)
T PF03141_consen 102 IDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLER-----------------NVTTMSFAPNDEHEAQVQFALERGVP 164 (506)
T ss_pred HHHHHHHhhccccCCceEEEEeccceeehhHHHHhhC-----------------CceEEEcccccCCchhhhhhhhcCcc
Confidence 34566666542 22 257999999999999999875 234444433211 1 1232
Q ss_pred EeecCCCChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEe
Q 025715 97 QVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (249)
Q Consensus 97 ~~~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~ 168 (249)
.+.+-+-.. .+ .+..++||+|.|--+.. . |..+.. -.|...-|+|+|||.|+..-.
T Consensus 165 a~~~~~~s~----rL--Pfp~~~fDmvHcsrc~i-~--W~~~~g-------~~l~evdRvLRpGGyfv~S~p 220 (506)
T PF03141_consen 165 AMIGVLGSQ----RL--PFPSNAFDMVHCSRCLI-P--WHPNDG-------FLLFEVDRVLRPGGYFVLSGP 220 (506)
T ss_pred hhhhhhccc----cc--cCCccchhhhhcccccc-c--chhccc-------ceeehhhhhhccCceEEecCC
Confidence 222221110 11 24668999999864321 1 111110 145667899999999998643
No 223
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=97.21 E-value=0.00074 Score=56.39 Aligned_cols=105 Identities=12% Similarity=0.106 Sum_probs=60.8
Q ss_pred ccCCC-eEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCc-eEeecCCCCh
Q 025715 39 FEGVK-RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGV-IQVQGDITNA 105 (249)
Q Consensus 39 ~~~g~-~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v-~~~~gDi~~~ 105 (249)
+.+.. +||++|||+|--..+.+..++ .....--|..+.. ..+++ ..+.-|++..
T Consensus 22 l~~~~~~vLEiaSGtGqHa~~FA~~lP-------------~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~ 88 (204)
T PF06080_consen 22 LPDSGTRVLEIASGTGQHAVYFAQALP-------------HLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAP 88 (204)
T ss_pred hCccCceEEEEcCCccHHHHHHHHHCC-------------CCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCC
Confidence 33444 599999999999999999885 2333333443321 12332 1234566654
Q ss_pred hhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEE
Q 025715 106 RTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIA 165 (249)
Q Consensus 106 ~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~ 165 (249)
...-.....+...+||.|++--... ...-......+..+.++|++||.|++
T Consensus 89 ~w~~~~~~~~~~~~~D~i~~~N~lH---------I~p~~~~~~lf~~a~~~L~~gG~L~~ 139 (204)
T PF06080_consen 89 PWPWELPAPLSPESFDAIFCINMLH---------ISPWSAVEGLFAGAARLLKPGGLLFL 139 (204)
T ss_pred CCccccccccCCCCcceeeehhHHH---------hcCHHHHHHHHHHHHHhCCCCCEEEE
Confidence 2110000011246899998742211 11122345678889999999999986
No 224
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.21 E-value=8.7e-05 Score=61.84 Aligned_cols=93 Identities=15% Similarity=0.162 Sum_probs=60.3
Q ss_pred ccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC---------------------CCCCceE
Q 025715 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------------------PIEGVIQ 97 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~---------------------~~~~v~~ 97 (249)
++||.++||+|+|+|..+..++..++. +.+.++|||.-+.. ....+.+
T Consensus 80 L~pG~s~LdvGsGSGYLt~~~~~mvg~-----------~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~i 148 (237)
T KOG1661|consen 80 LQPGASFLDVGSGSGYLTACFARMVGA-----------TGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSI 148 (237)
T ss_pred hccCcceeecCCCccHHHHHHHHHhcC-----------CCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEE
Confidence 479999999999999999998877763 22334888876521 0124556
Q ss_pred eecCCCChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEE
Q 025715 98 VQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKI 167 (249)
Q Consensus 98 ~~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~ 167 (249)
+.||...-.. ...+||.|.+-.+-+ .....-...|++||.+++=+
T Consensus 149 vvGDgr~g~~--------e~a~YDaIhvGAaa~-----------------~~pq~l~dqL~~gGrllip~ 193 (237)
T KOG1661|consen 149 VVGDGRKGYA--------EQAPYDAIHVGAAAS-----------------ELPQELLDQLKPGGRLLIPV 193 (237)
T ss_pred EeCCccccCC--------ccCCcceEEEccCcc-----------------ccHHHHHHhhccCCeEEEee
Confidence 6677654321 235688887753211 11233467899999999743
No 225
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=97.21 E-value=0.00026 Score=52.54 Aligned_cols=92 Identities=21% Similarity=0.220 Sum_probs=39.9
Q ss_pred EEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCC---C-C-------CCCceEeecCCCChhhHHHHHHh
Q 025715 46 VDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM---A-P-------IEGVIQVQGDITNARTAEVVIRH 114 (249)
Q Consensus 46 LDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~---~-~-------~~~v~~~~gDi~~~~~~~~i~~~ 114 (249)
|++|+..|..+..+++.+... ..++++++|..+. . . -.+++++++|..+ ....
T Consensus 1 lEiG~~~G~st~~l~~~~~~~----------~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~--~l~~---- 64 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDN----------GRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPD--FLPS---- 64 (106)
T ss_dssp ------------------------------------EEEESS------------GGG-BTEEEEES-THH--HHHH----
T ss_pred Ccccccccccccccccccccc----------ccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHH--HHHH----
Confidence 679999999999988766521 1248999999982 1 1 1368888998744 2222
Q ss_pred cCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEE
Q 025715 115 FDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIA 165 (249)
Q Consensus 115 ~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~ 165 (249)
+..+++|+|+.|+.... +-....+..+...|+|||.+++
T Consensus 65 ~~~~~~dli~iDg~H~~------------~~~~~dl~~~~~~l~~ggviv~ 103 (106)
T PF13578_consen 65 LPDGPIDLIFIDGDHSY------------EAVLRDLENALPRLAPGGVIVF 103 (106)
T ss_dssp HHH--EEEEEEES---H------------HHHHHHHHHHGGGEEEEEEEEE
T ss_pred cCCCCEEEEEECCCCCH------------HHHHHHHHHHHHHcCCCeEEEE
Confidence 22468999999984211 1224567888999999998876
No 226
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=97.18 E-value=0.0015 Score=62.37 Aligned_cols=82 Identities=12% Similarity=0.014 Sum_probs=47.5
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC---------CC--CceEeecCCCChhhHH
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP---------IE--GVIQVQGDITNARTAE 109 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~---------~~--~v~~~~gDi~~~~~~~ 109 (249)
...+|||.|||+|+|...+++++...+.. .+....++|+|+++... .. +.....+|.......
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~-----~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~- 104 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYF-----KEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLL- 104 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCc-----ccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeeccccccccc-
Confidence 45699999999999999998877421110 00135789999987431 11 223344443321100
Q ss_pred HHHHhcCCCcccEEEeCCCCC
Q 025715 110 VVIRHFDGCKADLVVCDGAPD 130 (249)
Q Consensus 110 ~i~~~~~~~~~DlVlsD~~~~ 130 (249)
.... ..+.||+|++|++..
T Consensus 105 -~~~~-~~~~fD~IIgNPPy~ 123 (524)
T TIGR02987 105 -NIES-YLDLFDIVITNPPYG 123 (524)
T ss_pred -cccc-ccCcccEEEeCCCcc
Confidence 0000 125799999998543
No 227
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=97.17 E-value=0.0017 Score=56.28 Aligned_cols=70 Identities=14% Similarity=0.249 Sum_probs=54.1
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC---------CCCCceEeecCCCChhhHHH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------PIEGVIQVQGDITNARTAEV 110 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~---------~~~~v~~~~gDi~~~~~~~~ 110 (249)
.++.+||++|+|.|+.|..++++. .+|+|+++++.. ...+++.++||+...+..+
T Consensus 29 ~~~d~VlEIGpG~GaLT~~Ll~~~---------------~~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk~d~~~- 92 (259)
T COG0030 29 SPGDNVLEIGPGLGALTEPLLERA---------------ARVTAIEIDRRLAEVLKERFAPYDNLTVINGDALKFDFPS- 92 (259)
T ss_pred CCCCeEEEECCCCCHHHHHHHhhc---------------CeEEEEEeCHHHHHHHHHhcccccceEEEeCchhcCcchh-
Confidence 458899999999999999999875 589999998731 2467899999998765311
Q ss_pred HHHhcCCCcccEEEeCCCCCC
Q 025715 111 VIRHFDGCKADLVVCDGAPDV 131 (249)
Q Consensus 111 i~~~~~~~~~DlVlsD~~~~~ 131 (249)
+ ..++.|++|.+-+.
T Consensus 93 ----l--~~~~~vVaNlPY~I 107 (259)
T COG0030 93 ----L--AQPYKVVANLPYNI 107 (259)
T ss_pred ----h--cCCCEEEEcCCCcc
Confidence 0 06899999986443
No 228
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=97.08 E-value=0.011 Score=52.97 Aligned_cols=109 Identities=13% Similarity=0.072 Sum_probs=68.1
Q ss_pred ccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCC-----------CCCCCceE--eecCCCCh
Q 025715 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM-----------APIEGVIQ--VQGDITNA 105 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~-----------~~~~~v~~--~~gDi~~~ 105 (249)
+.++..++|||||.|..+..+++.+... ......+++|++.. ..++.+.+ +.||.++.
T Consensus 74 i~~~~~lIELGsG~~~Kt~~LL~aL~~~---------~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~ 144 (319)
T TIGR03439 74 IPSGSMLVELGSGNLRKVGILLEALERQ---------KKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDG 144 (319)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHhc---------CCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHH
Confidence 3567799999999999999988876411 02367999999962 12455544 78888764
Q ss_pred hhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHH-hccCCCEEEEE
Q 025715 106 RTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTH-VLKEGGKFIAK 166 (249)
Q Consensus 106 ~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~-~Lk~gG~lv~k 166 (249)
-. .+..........+|+.-|+ ...|.+..... ..|....+ .|+|||.|++-
T Consensus 145 l~--~l~~~~~~~~~r~~~flGS----siGNf~~~ea~----~fL~~~~~~~l~~~d~lLiG 196 (319)
T TIGR03439 145 LA--WLKRPENRSRPTTILWLGS----SIGNFSRPEAA----AFLAGFLATALSPSDSFLIG 196 (319)
T ss_pred Hh--hcccccccCCccEEEEeCc----cccCCCHHHHH----HHHHHHHHhhCCCCCEEEEe
Confidence 21 1111001234577777552 23344543322 34556666 89999999974
No 229
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=96.98 E-value=0.02 Score=50.52 Aligned_cols=73 Identities=25% Similarity=0.268 Sum_probs=55.6
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC---------C-CCCceEeecCCCChhhHH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------P-IEGVIQVQGDITNARTAE 109 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~---------~-~~~v~~~~gDi~~~~~~~ 109 (249)
+++..++|.=-|-||.|+++++.++ +.++++|+|..+.+ . -++++++++++.+...
T Consensus 22 ~~~giyiD~TlG~GGHS~~iL~~l~------------~~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F~~l~~-- 87 (314)
T COG0275 22 KPDGIYIDGTLGAGGHSRAILEKLP------------DLGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNFANLAE-- 87 (314)
T ss_pred CCCcEEEEecCCCcHhHHHHHHhCC------------CCCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCcHHHHHH--
Confidence 6778999999999999999999986 56889999999843 1 2478888888766432
Q ss_pred HHHHhcCCCcccEEEeCC
Q 025715 110 VVIRHFDGCKADLVVCDG 127 (249)
Q Consensus 110 ~i~~~~~~~~~DlVlsD~ 127 (249)
.....+-+++|-|+.|.
T Consensus 88 -~l~~~~i~~vDGiL~DL 104 (314)
T COG0275 88 -ALKELGIGKVDGILLDL 104 (314)
T ss_pred -HHHhcCCCceeEEEEec
Confidence 22233446888888885
No 230
>PRK11524 putative methyltransferase; Provisional
Probab=96.93 E-value=0.0061 Score=53.66 Aligned_cols=90 Identities=12% Similarity=0.201 Sum_probs=52.9
Q ss_pred eEeecCCCChhhHHHHHHhcCCCcccEEEeCCCCCCCCC-----CCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecC
Q 025715 96 IQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGL-----HDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRG 170 (249)
Q Consensus 96 ~~~~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~-----~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~ 170 (249)
++++||..+. .+.+++++||+|++|++...... ...+.......+...+.++.++|||||.+++ ....
T Consensus 10 ~i~~gD~~~~------l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i-~~~~ 82 (284)
T PRK11524 10 TIIHGDALTE------LKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYI-MNST 82 (284)
T ss_pred EEEeccHHHH------HHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEE-EcCc
Confidence 5678887652 23456789999999986543110 0111222334456788999999999999998 3433
Q ss_pred CCHHHHHHHHhcCC---CeeEEecC
Q 025715 171 KDTSLLYCQLKLFF---PVVTFAKP 192 (249)
Q Consensus 171 ~~~~~l~~~l~~~f---~~v~~~kP 192 (249)
.....+..+++..| ..+.+.|+
T Consensus 83 ~~~~~~~~~~~~~f~~~~~iiW~k~ 107 (284)
T PRK11524 83 ENMPFIDLYCRKLFTIKSRIVWSYD 107 (284)
T ss_pred hhhhHHHHHHhcCcceEEEEEEEeC
Confidence 33333333344333 34444554
No 231
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=96.91 E-value=0.0037 Score=50.23 Aligned_cols=61 Identities=23% Similarity=0.348 Sum_probs=44.1
Q ss_pred CCceEeecCCCChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCCC
Q 025715 93 EGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKD 172 (249)
Q Consensus 93 ~~v~~~~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~ 172 (249)
.+++++++|+.+.+ +.+++||+|++....... .+. ..++..+.++|||||.|++..+..++
T Consensus 26 ~~i~~~~~d~~~lp--------~~~~~fD~v~~~~~l~~~----~d~-------~~~l~ei~rvLkpGG~l~i~d~~~~~ 86 (160)
T PLN02232 26 KCIEWIEGDAIDLP--------FDDCEFDAVTMGYGLRNV----VDR-------LRAMKEMYRVLKPGSRVSILDFNKSN 86 (160)
T ss_pred CceEEEEechhhCC--------CCCCCeeEEEecchhhcC----CCH-------HHHHHHHHHHcCcCeEEEEEECCCCC
Confidence 35889999998754 356789999986533211 121 35788999999999999987776544
No 232
>PRK00536 speE spermidine synthase; Provisional
Probab=96.88 E-value=0.0087 Score=52.11 Aligned_cols=108 Identities=17% Similarity=0.157 Sum_probs=71.8
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC---------------CCCCceEeecCCCCh
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------------PIEGVIQVQGDITNA 105 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~---------------~~~~v~~~~gDi~~~ 105 (249)
..++||=+|.|-|+-..-+++. + .+|+-|||++.. .-|+++.+. .
T Consensus 72 ~pk~VLIiGGGDGg~~REvLkh-~--------------~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~-~---- 131 (262)
T PRK00536 72 ELKEVLIVDGFDLELAHQLFKY-D--------------THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAK-Q---- 131 (262)
T ss_pred CCCeEEEEcCCchHHHHHHHCc-C--------------CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEee-h----
Confidence 4589999999999988777764 2 389999998732 123454442 1
Q ss_pred hhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCC----CHHHHHHHHh
Q 025715 106 RTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGK----DTSLLYCQLK 181 (249)
Q Consensus 106 ~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~----~~~~l~~~l~ 181 (249)
+.+. ..++||+|+.|..+. . ...+.+.+.|+|||.+++..-.+. ....+...++
T Consensus 132 -----~~~~-~~~~fDVIIvDs~~~--------~--------~fy~~~~~~L~~~Gi~v~Qs~sp~~~~~~~~~i~~~l~ 189 (262)
T PRK00536 132 -----LLDL-DIKKYDLIICLQEPD--------I--------HKIDGLKRMLKEDGVFISVAKHPLLEHVSMQNALKNMG 189 (262)
T ss_pred -----hhhc-cCCcCCEEEEcCCCC--------h--------HHHHHHHHhcCCCcEEEECCCCcccCHHHHHHHHHHHH
Confidence 1111 236899999996432 1 234677899999999998643322 2345666677
Q ss_pred cCCCeeEEe
Q 025715 182 LFFPVVTFA 190 (249)
Q Consensus 182 ~~f~~v~~~ 190 (249)
..|..|..+
T Consensus 190 ~~F~~v~~y 198 (262)
T PRK00536 190 DFFSIAMPF 198 (262)
T ss_pred hhCCceEEE
Confidence 788876654
No 233
>KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.88 E-value=0.0055 Score=55.50 Aligned_cols=87 Identities=24% Similarity=0.340 Sum_probs=61.2
Q ss_pred hhhhhcCcc-------cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC--------CC--
Q 025715 31 QIDEEFNIF-------EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP--------IE-- 93 (249)
Q Consensus 31 ei~~~~~~~-------~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~--------~~-- 93 (249)
.+++++.++ .+|.+|+|.||+||..+.+++..+. ..+++.|+|++..+. ..
T Consensus 196 ilqd~asclpA~ll~p~~g~~v~d~caapg~KTsH~a~i~~------------n~gki~afe~d~~r~~tl~~~l~~ag~ 263 (413)
T KOG2360|consen 196 ILQDKASCLPAHLLDPRPGSRVIDTCAAPGNKTSHLAAIMR------------NQGKIYAFERDAKRAATLRKLLKIAGV 263 (413)
T ss_pred EEechhhcchhhhcCCCCCCceeeeccccccchhhHHHHhh------------ccCCcchhhhhhHHHHHHHHHHHHcCC
Confidence 345666554 4689999999999999999998876 468999999987431 12
Q ss_pred -CceEeecCCCChhhHHHHHHhcCCCcccEEEeCCCCCCCCCC
Q 025715 94 -GVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLH 135 (249)
Q Consensus 94 -~v~~~~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~ 135 (249)
.+....+|.+.... ...+ ..+..|++|++++.+|..
T Consensus 264 ~~~~~~~~df~~t~~----~~~~--~~v~~iL~DpscSgSgm~ 300 (413)
T KOG2360|consen 264 SIVESVEGDFLNTAT----PEKF--RDVTYILVDPSCSGSGMV 300 (413)
T ss_pred CccccccccccCCCC----cccc--cceeEEEeCCCCCCCccc
Confidence 33445677766311 1112 458889999988877754
No 234
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=96.87 E-value=0.0085 Score=56.13 Aligned_cols=130 Identities=19% Similarity=0.226 Sum_probs=70.6
Q ss_pred CeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC---C---C--CCceEeecCCCChhhHHHHHHh
Q 025715 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---P---I--EGVIQVQGDITNARTAEVVIRH 114 (249)
Q Consensus 43 ~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~---~---~--~~v~~~~gDi~~~~~~~~i~~~ 114 (249)
..|+|+.+|.|||+.+|.+. .|..+..-|.. . + .|..-+.-|.... .+
T Consensus 367 RNVMDMnAg~GGFAAAL~~~-----------------~VWVMNVVP~~~~ntL~vIydRGLIG~yhDWCE~------fs- 422 (506)
T PF03141_consen 367 RNVMDMNAGYGGFAAALIDD-----------------PVWVMNVVPVSGPNTLPVIYDRGLIGVYHDWCEA------FS- 422 (506)
T ss_pred eeeeeecccccHHHHHhccC-----------------CceEEEecccCCCCcchhhhhcccchhccchhhc------cC-
Confidence 58999999999999888652 12222332221 1 1 1221112244331 11
Q ss_pred cCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCCCHHHHHHHHhcC-CCeeEEecCC
Q 025715 115 FDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLF-FPVVTFAKPK 193 (249)
Q Consensus 115 ~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~~~l~~~l~~~-f~~v~~~kP~ 193 (249)
.-+.++|+|++++-++....+ ..+..++.+.-|+|+|||.+++.-. ..-...+..+.... |+ ++++. .
T Consensus 423 TYPRTYDLlHA~~lfs~~~~r--------C~~~~illEmDRILRP~G~~iiRD~-~~vl~~v~~i~~~lrW~-~~~~d-~ 491 (506)
T PF03141_consen 423 TYPRTYDLLHADGLFSLYKDR--------CEMEDILLEMDRILRPGGWVIIRDT-VDVLEKVKKIAKSLRWE-VRIHD-T 491 (506)
T ss_pred CCCcchhheehhhhhhhhccc--------ccHHHHHHHhHhhcCCCceEEEecc-HHHHHHHHHHHHhCcce-EEEEe-c
Confidence 124799999999865432111 1234678888999999999988421 11122333333332 33 33332 2
Q ss_pred CCCCCCceEEEEEe
Q 025715 194 SSRNSSIEAFAVCE 207 (249)
Q Consensus 194 ~sr~~s~E~y~v~~ 207 (249)
...+...|..++|+
T Consensus 492 e~g~~~~EkiL~~~ 505 (506)
T PF03141_consen 492 EDGPDGPEKILICQ 505 (506)
T ss_pred CCCCCCCceEEEEE
Confidence 33445578888885
No 235
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=96.83 E-value=0.0053 Score=50.83 Aligned_cols=106 Identities=16% Similarity=0.117 Sum_probs=62.6
Q ss_pred ccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC-----------------CCCceEeecC
Q 025715 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP-----------------IEGVIQVQGD 101 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~-----------------~~~v~~~~gD 101 (249)
+++|++|+|+=-|-|.|+..++..++ +.|.|+++--.+... ..|++.+..+
T Consensus 46 lkpg~tVid~~PGgGy~TrI~s~~vg------------p~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~ 113 (238)
T COG4798 46 LKPGATVIDLIPGGGYFTRIFSPAVG------------PKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKP 113 (238)
T ss_pred cCCCCEEEEEecCCccHhhhhchhcC------------CceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCc
Confidence 38999999999999999999999887 578888875554321 1233333333
Q ss_pred CCChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEec
Q 025715 102 ITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFR 169 (249)
Q Consensus 102 i~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~ 169 (249)
+... ......|++...-.-..--.++... .....+...+.+.|||||.+++.-++
T Consensus 114 ~~A~---------~~pq~~d~~~~~~~yhdmh~k~i~~----~~A~~vna~vf~~LKPGGv~~V~dH~ 168 (238)
T COG4798 114 LVAL---------GAPQKLDLVPTAQNYHDMHNKNIHP----ATAAKVNAAVFKALKPGGVYLVEDHR 168 (238)
T ss_pred cccc---------CCCCcccccccchhhhhhhccccCc----chHHHHHHHHHHhcCCCcEEEEEecc
Confidence 2221 1223445544321100000111111 11234677789999999999987663
No 236
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=96.75 E-value=0.001 Score=60.35 Aligned_cols=70 Identities=23% Similarity=0.348 Sum_probs=41.0
Q ss_pred eEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhh-HHH-
Q 025715 44 RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNART-AEV- 110 (249)
Q Consensus 44 ~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~-~~~- 110 (249)
++|||.||.|.|+..++... .+|+|||+.+.+ .+.+++++.++..+... ...
T Consensus 199 ~vlDlycG~G~fsl~la~~~---------------~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~~~~~~~~~ 263 (352)
T PF05958_consen 199 DVLDLYCGVGTFSLPLAKKA---------------KKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAEDFAKALAKA 263 (352)
T ss_dssp EEEEES-TTTCCHHHHHCCS---------------SEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHHCCCHHCCS
T ss_pred cEEEEeecCCHHHHHHHhhC---------------CeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccchhHHHHhh
Confidence 89999999999999999764 599999998742 35788888776532110 000
Q ss_pred -----HHH-hcCCCcccEEEeCCC
Q 025715 111 -----VIR-HFDGCKADLVVCDGA 128 (249)
Q Consensus 111 -----i~~-~~~~~~~DlVlsD~~ 128 (249)
+.. .+....+|+|+.|++
T Consensus 264 r~~~~~~~~~~~~~~~d~vilDPP 287 (352)
T PF05958_consen 264 REFNRLKGIDLKSFKFDAVILDPP 287 (352)
T ss_dssp -GGTTGGGS-GGCTTESEEEE---
T ss_pred HHHHhhhhhhhhhcCCCEEEEcCC
Confidence 000 012246899999974
No 237
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=96.75 E-value=0.0016 Score=55.16 Aligned_cols=106 Identities=19% Similarity=0.215 Sum_probs=71.2
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-------CCCCce--EeecCCCChhhHHH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-------PIEGVI--QVQGDITNARTAEV 110 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-------~~~~v~--~~~gDi~~~~~~~~ 110 (249)
+.-..++|+||+-|....++..+. -.+++-+|.+.-. .-+++. ...+|-..++
T Consensus 71 k~fp~a~diGcs~G~v~rhl~~e~--------------vekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ld---- 132 (325)
T KOG2940|consen 71 KSFPTAFDIGCSLGAVKRHLRGEG--------------VEKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLD---- 132 (325)
T ss_pred hhCcceeecccchhhhhHHHHhcc--------------hhheeeeecchHHHHHhhccCCCceEEEEEecchhccc----
Confidence 444689999999999998887542 3578888988621 124432 2345433322
Q ss_pred HHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCCCHHHHHH
Q 025715 111 VIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYC 178 (249)
Q Consensus 111 i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~~~l~~ 178 (249)
|.+.++|+|++.++..|.. +-+ .-+..+...|||.|.|+-.++.+...-++..
T Consensus 133 ----f~ens~DLiisSlslHW~N----dLP-------g~m~~ck~~lKPDg~FiasmlggdTLyELR~ 185 (325)
T KOG2940|consen 133 ----FKENSVDLIISSLSLHWTN----DLP-------GSMIQCKLALKPDGLFIASMLGGDTLYELRC 185 (325)
T ss_pred ----ccccchhhhhhhhhhhhhc----cCc-------hHHHHHHHhcCCCccchhHHhccccHHHHHH
Confidence 5678999999988765542 211 2345677899999999998887776655543
No 238
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=96.73 E-value=0.0024 Score=53.25 Aligned_cols=101 Identities=21% Similarity=0.164 Sum_probs=54.3
Q ss_pred CCCeEEEEcCCCCh--HHH--HHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC---------------C----------
Q 025715 41 GVKRVVDLCAAPGS--WSQ--VLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------------P---------- 91 (249)
Q Consensus 41 ~g~~vLDLG~gpG~--~s~--~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~---------------~---------- 91 (249)
+..+|+..||++|- +|. .+.+..+... +...+|+|.|+++.. .
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~--------~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf 102 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGAL--------GWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYF 102 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-T--------T-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHE
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccC--------CCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhc
Confidence 34799999999995 333 3333222110 124699999999721 0
Q ss_pred --------------CCCceEeecCCCChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhc
Q 025715 92 --------------IEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVL 157 (249)
Q Consensus 92 --------------~~~v~~~~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~L 157 (249)
...|+|.+.|+.+... ..+.||+|+|--..-. .+. +....++....+.|
T Consensus 103 ~~~~~~~~~v~~~lr~~V~F~~~NL~~~~~--------~~~~fD~I~CRNVlIY-----F~~----~~~~~vl~~l~~~L 165 (196)
T PF01739_consen 103 TERDGGGYRVKPELRKMVRFRRHNLLDPDP--------PFGRFDLIFCRNVLIY-----FDP----ETQQRVLRRLHRSL 165 (196)
T ss_dssp EEE-CCCTTE-HHHHTTEEEEE--TT-S--------------EEEEEE-SSGGG-----S-H----HHHHHHHHHHGGGE
T ss_pred cccCCCceeEChHHcCceEEEecccCCCCc--------ccCCccEEEecCEEEE-----eCH----HHHHHHHHHHHHHc
Confidence 0246777778777211 2368999999643211 122 23456788889999
Q ss_pred cCCCEEEEE
Q 025715 158 KEGGKFIAK 166 (249)
Q Consensus 158 k~gG~lv~k 166 (249)
+|||.|++-
T Consensus 166 ~pgG~L~lG 174 (196)
T PF01739_consen 166 KPGGYLFLG 174 (196)
T ss_dssp EEEEEEEE-
T ss_pred CCCCEEEEe
Confidence 999999983
No 239
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=96.69 E-value=0.0052 Score=53.34 Aligned_cols=68 Identities=15% Similarity=0.185 Sum_probs=54.0
Q ss_pred ccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC---------CC---CCceEeecCCCChh
Q 025715 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------PI---EGVIQVQGDITNAR 106 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~---------~~---~~v~~~~gDi~~~~ 106 (249)
++++..||++|-|||..+..+.+.. .+|+|+++++-. .. ...+.+.||+...+
T Consensus 56 ~k~tD~VLEvGPGTGnLT~~lLe~~---------------kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d 120 (315)
T KOG0820|consen 56 LKPTDVVLEVGPGTGNLTVKLLEAG---------------KKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTD 120 (315)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHhc---------------CeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCC
Confidence 4889999999999999999999863 699999999832 11 24678899998754
Q ss_pred hHHHHHHhcCCCcccEEEeCCCCCC
Q 025715 107 TAEVVIRHFDGCKADLVVCDGAPDV 131 (249)
Q Consensus 107 ~~~~i~~~~~~~~~DlVlsD~~~~~ 131 (249)
...||.+++|.+++.
T Consensus 121 ----------~P~fd~cVsNlPyqI 135 (315)
T KOG0820|consen 121 ----------LPRFDGCVSNLPYQI 135 (315)
T ss_pred ----------CcccceeeccCCccc
Confidence 247999999976543
No 240
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=96.67 E-value=0.0017 Score=60.77 Aligned_cols=63 Identities=21% Similarity=0.361 Sum_probs=48.5
Q ss_pred hhhhhhHHhhhhhcCcccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------C
Q 025715 23 ARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------P 91 (249)
Q Consensus 23 ~ra~~KL~ei~~~~~~~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~ 91 (249)
+.++-+|+.+-..+.-+..+..+||+|||+|.++..+++.. .+|+||++++.+ .
T Consensus 365 t~~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~~---------------~~ViGvEi~~~aV~dA~~nA~~Ng 429 (534)
T KOG2187|consen 365 TSAAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARGV---------------KRVIGVEISPDAVEDAEKNAQING 429 (534)
T ss_pred cHHHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhccc---------------cceeeeecChhhcchhhhcchhcC
Confidence 34455666655555556778999999999999999999865 599999999853 2
Q ss_pred CCCceEeec
Q 025715 92 IEGVIQVQG 100 (249)
Q Consensus 92 ~~~v~~~~g 100 (249)
+.|.+|++|
T Consensus 430 isNa~Fi~g 438 (534)
T KOG2187|consen 430 ISNATFIVG 438 (534)
T ss_pred ccceeeeec
Confidence 457888888
No 241
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=96.55 E-value=0.029 Score=55.53 Aligned_cols=119 Identities=10% Similarity=-0.059 Sum_probs=68.6
Q ss_pred cccCCCeEEEEcCCCChHHHHHHHHhcC-CCCC---------CCCC----------C---------CCCCCeEEEecCCC
Q 025715 38 IFEGVKRVVDLCAAPGSWSQVLSRKLYL-PAKL---------SPDS----------R---------EGDLPLIVAIDLQP 88 (249)
Q Consensus 38 ~~~~g~~vLDLG~gpG~~s~~l~~~~~~-~~~~---------~~~~----------~---------~~~~~~vvavDi~~ 88 (249)
+.+++..++|-+||+|.+...++..... +-|. ++.. + .....+++|+|+++
T Consensus 187 w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~ 266 (702)
T PRK11783 187 WPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDP 266 (702)
T ss_pred CCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCH
Confidence 3356889999999999999876653210 0000 0000 0 01234799999998
Q ss_pred CC-----------CCC-CceEeecCCCChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHh
Q 025715 89 MA-----------PIE-GVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHV 156 (249)
Q Consensus 89 ~~-----------~~~-~v~~~~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~ 156 (249)
.. .+. .+.+.++|+.+... ....+++|+|++|++.. .+-.+.....+++. .+...++.
T Consensus 267 ~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~------~~~~~~~d~IvtNPPYg---~r~~~~~~l~~lY~-~lg~~lk~ 336 (702)
T PRK11783 267 RVIQAARKNARRAGVAELITFEVKDVADLKN------PLPKGPTGLVISNPPYG---ERLGEEPALIALYS-QLGRRLKQ 336 (702)
T ss_pred HHHHHHHHHHHHcCCCcceEEEeCChhhccc------ccccCCCCEEEECCCCc---CccCchHHHHHHHH-HHHHHHHH
Confidence 42 122 36788999877532 11225799999997532 22222223333433 34455555
Q ss_pred ccCCCEEEEE
Q 025715 157 LKEGGKFIAK 166 (249)
Q Consensus 157 Lk~gG~lv~k 166 (249)
..+|+.+++-
T Consensus 337 ~~~g~~~~ll 346 (702)
T PRK11783 337 QFGGWNAALF 346 (702)
T ss_pred hCCCCeEEEE
Confidence 5688887763
No 242
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=96.52 E-value=0.0039 Score=54.18 Aligned_cols=68 Identities=18% Similarity=0.277 Sum_probs=51.5
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC---------CCCCceEeecCCCChhhHHHH
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------PIEGVIQVQGDITNARTAEVV 111 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~---------~~~~v~~~~gDi~~~~~~~~i 111 (249)
++..|||+|+|+|.+|..++++. ..++++|+++.. ..++++.+.+|+.+.+....
T Consensus 30 ~~~~VlEiGpG~G~lT~~L~~~~---------------~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~~~~~~~- 93 (262)
T PF00398_consen 30 EGDTVLEIGPGPGALTRELLKRG---------------KRVIAVEIDPDLAKHLKERFASNPNVEVINGDFLKWDLYDL- 93 (262)
T ss_dssp TTSEEEEESSTTSCCHHHHHHHS---------------SEEEEEESSHHHHHHHHHHCTTCSSEEEEES-TTTSCGGGH-
T ss_pred CCCEEEEeCCCCccchhhHhccc---------------CcceeecCcHhHHHHHHHHhhhcccceeeecchhccccHHh-
Confidence 78999999999999999998874 599999999731 23689999999988653211
Q ss_pred HHhcCCCcccEEEeCCC
Q 025715 112 IRHFDGCKADLVVCDGA 128 (249)
Q Consensus 112 ~~~~~~~~~DlVlsD~~ 128 (249)
+ .....+|+++.+
T Consensus 94 ---~-~~~~~~vv~NlP 106 (262)
T PF00398_consen 94 ---L-KNQPLLVVGNLP 106 (262)
T ss_dssp ---C-SSSEEEEEEEET
T ss_pred ---h-cCCceEEEEEec
Confidence 1 245678888864
No 243
>PRK10742 putative methyltransferase; Provisional
Probab=96.31 E-value=0.03 Score=48.21 Aligned_cols=70 Identities=17% Similarity=0.150 Sum_probs=49.3
Q ss_pred cCCC--eEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC---------C----------C-CCceE
Q 025715 40 EGVK--RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------P----------I-EGVIQ 97 (249)
Q Consensus 40 ~~g~--~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~---------~----------~-~~v~~ 97 (249)
++|. +|||+.+|.|.-+..++.+ + +.|+++|.++.. . + .+++.
T Consensus 85 k~g~~p~VLD~TAGlG~Da~~las~-G--------------~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l 149 (250)
T PRK10742 85 KGDYLPDVVDATAGLGRDAFVLASV-G--------------CRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQL 149 (250)
T ss_pred CCCCCCEEEECCCCccHHHHHHHHc-C--------------CEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEE
Confidence 4566 8999999999999999976 3 679999999842 0 1 23455
Q ss_pred eecCCCChhhHHHHHHhcCCCcccEEEeCCCCCC
Q 025715 98 VQGDITNARTAEVVIRHFDGCKADLVVCDGAPDV 131 (249)
Q Consensus 98 ~~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~~~~ 131 (249)
+++|..+ .+. ... .+||+|..|+.+..
T Consensus 150 ~~~da~~-----~L~-~~~-~~fDVVYlDPMfp~ 176 (250)
T PRK10742 150 IHASSLT-----ALT-DIT-PRPQVVYLDPMFPH 176 (250)
T ss_pred EeCcHHH-----HHh-hCC-CCCcEEEECCCCCC
Confidence 5565433 222 233 47999999987654
No 244
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=96.26 E-value=0.019 Score=45.21 Aligned_cols=85 Identities=18% Similarity=0.187 Sum_probs=48.8
Q ss_pred eEEEecCCCCC-----------CC-CCceEeecCCCChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHH
Q 025715 80 LIVAIDLQPMA-----------PI-EGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLIL 147 (249)
Q Consensus 80 ~vvavDi~~~~-----------~~-~~v~~~~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~ 147 (249)
+|+|+||++.+ .. .+++.+...-.+. .+.++.+++|+|+-|...-..|.+..-.. .+-..
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l------~~~i~~~~v~~~iFNLGYLPggDk~i~T~--~~TTl 72 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENL------DEYIPEGPVDAAIFNLGYLPGGDKSITTK--PETTL 72 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGG------GGT--S--EEEEEEEESB-CTS-TTSB----HHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHH------HhhCccCCcCEEEEECCcCCCCCCCCCcC--cHHHH
Confidence 58999999853 11 3577776543332 22234358999999976444554433221 22235
Q ss_pred HHHHHHHHhccCCCEEEEEEecCCC
Q 025715 148 AGLTVVTHVLKEGGKFIAKIFRGKD 172 (249)
Q Consensus 148 ~~l~~a~~~Lk~gG~lv~k~~~~~~ 172 (249)
.+++.++++|+|||.+++.++.+..
T Consensus 73 ~Al~~al~lL~~gG~i~iv~Y~GH~ 97 (140)
T PF06962_consen 73 KALEAALELLKPGGIITIVVYPGHP 97 (140)
T ss_dssp HHHHHHHHHEEEEEEEEEEE--STC
T ss_pred HHHHHHHHhhccCCEEEEEEeCCCC
Confidence 6899999999999999998886544
No 245
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=96.26 E-value=0.021 Score=48.11 Aligned_cols=116 Identities=16% Similarity=0.069 Sum_probs=69.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCCCCCceEeecCCCChhhHHHHHHhcCCCccc
Q 025715 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKAD 121 (249)
Q Consensus 42 g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~~~~v~~~~gDi~~~~~~~~i~~~~~~~~~D 121 (249)
..++||+||-........ .+ --.|+++|+++.. ++ +.+.|+++.+.. .-..++||
T Consensus 52 ~lrlLEVGals~~N~~s~---~~-------------~fdvt~IDLns~~--~~--I~qqDFm~rplp-----~~~~e~Fd 106 (219)
T PF11968_consen 52 KLRLLEVGALSTDNACST---SG-------------WFDVTRIDLNSQH--PG--ILQQDFMERPLP-----KNESEKFD 106 (219)
T ss_pred cceEEeecccCCCCcccc---cC-------------ceeeEEeecCCCC--CC--ceeeccccCCCC-----CCccccee
Confidence 369999998754422111 11 2469999999944 44 367788775421 01347899
Q ss_pred EEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCE-----EEEEEecC-------CCHHHHHHHHhcC-CCeeE
Q 025715 122 LVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGK-----FIAKIFRG-------KDTSLLYCQLKLF-FPVVT 188 (249)
Q Consensus 122 lVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~-----lv~k~~~~-------~~~~~l~~~l~~~-f~~v~ 188 (249)
+|.+-+..++.+ ++..- -..+..+.++|+|+|. |.+-+-.+ .+...+..+|... |..+.
T Consensus 107 vIs~SLVLNfVP----~p~~R----G~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~NSRy~~~~~l~~im~~LGf~~~~ 178 (219)
T PF11968_consen 107 VISLSLVLNFVP----DPKQR----GEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVTNSRYMTEERLREIMESLGFTRVK 178 (219)
T ss_pred EEEEEEEEeeCC----CHHHH----HHHHHHHHHHhCCCCccCcceEEEEeCchHhhcccccCHHHHHHHHHhCCcEEEE
Confidence 999877655432 22111 1357788999999999 76633221 1233445555543 77777
Q ss_pred Ee
Q 025715 189 FA 190 (249)
Q Consensus 189 ~~ 190 (249)
..
T Consensus 179 ~~ 180 (219)
T PF11968_consen 179 YK 180 (219)
T ss_pred EE
Confidence 53
No 246
>PRK13699 putative methylase; Provisional
Probab=96.24 E-value=0.033 Score=47.47 Aligned_cols=92 Identities=17% Similarity=0.225 Sum_probs=53.6
Q ss_pred eEeecCCCChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCC-----cCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecC
Q 025715 96 IQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHD-----MDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRG 170 (249)
Q Consensus 96 ~~~~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~-----~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~ 170 (249)
+.++||..+ +.+.++++++|+|+.|++-.. +..+ .......+.....+.++.++|||||.+++- +..
T Consensus 3 ~l~~gD~le------~l~~lpd~SVDLIiTDPPY~i-~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if-~~~ 74 (227)
T PRK13699 3 RFILGNCID------VMARFPDNAVDFILTDPPYLV-GFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSF-YGW 74 (227)
T ss_pred eEEechHHH------HHHhCCccccceEEeCCCccc-ccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEE-ecc
Confidence 456777654 334578899999999986432 1111 111112344567889999999999998862 222
Q ss_pred CCHHHHHHHHhc-CC---CeeEEecCCCC
Q 025715 171 KDTSLLYCQLKL-FF---PVVTFAKPKSS 195 (249)
Q Consensus 171 ~~~~~l~~~l~~-~f---~~v~~~kP~~s 195 (249)
.....+...++. -| ..+.+.|+...
T Consensus 75 ~~~~~~~~al~~~GF~l~~~IiW~K~~~~ 103 (227)
T PRK13699 75 NRVDRFMAAWKNAGFSVVGHLVFTKNYTS 103 (227)
T ss_pred ccHHHHHHHHHHCCCEEeeEEEEECCCCC
Confidence 223344444443 24 44566676543
No 247
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=96.17 E-value=0.016 Score=51.89 Aligned_cols=107 Identities=20% Similarity=0.244 Sum_probs=74.2
Q ss_pred ccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCCC---------------CC-----ceEe
Q 025715 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPI---------------EG-----VIQV 98 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~~---------------~~-----v~~~ 98 (249)
.+||.-|.|=-.|||++....++. | +.|+|-||+-.... ++ +..+
T Consensus 206 v~pGdivyDPFVGTGslLvsaa~F-G--------------a~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl 270 (421)
T KOG2671|consen 206 VKPGDIVYDPFVGTGSLLVSAAHF-G--------------AYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVL 270 (421)
T ss_pred cCCCCEEecCccccCceeeehhhh-c--------------ceeeccccchheeecccCCCcchhHhHHHhCCcchhhhee
Confidence 379999999999999999877765 3 79999999863210 11 2346
Q ss_pred ecCCCChhhHHHHHHhcCCCcccEEEeCCCCCCC------CC----------------CCcCHHHHHHHHHHHHHHHHHh
Q 025715 99 QGDITNARTAEVVIRHFDGCKADLVVCDGAPDVT------GL----------------HDMDEFVQSQLILAGLTVVTHV 156 (249)
Q Consensus 99 ~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~------g~----------------~~~~~~~~~~l~~~~l~~a~~~ 156 (249)
.+|.+++.. . .+-.||.|+||++-.+. |- ....++....++...+..+.+.
T Consensus 271 ~~D~sn~~~----r---sn~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~ 343 (421)
T KOG2671|consen 271 TADFSNPPL----R---SNLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRR 343 (421)
T ss_pred eecccCcch----h---hcceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhh
Confidence 778888653 2 24579999999742210 00 1112334455678889999999
Q ss_pred ccCCCEEEEEE
Q 025715 157 LKEGGKFIAKI 167 (249)
Q Consensus 157 Lk~gG~lv~k~ 167 (249)
|.-||++|+-+
T Consensus 344 L~~ggrlv~w~ 354 (421)
T KOG2671|consen 344 LVDGGRLVFWL 354 (421)
T ss_pred hhcCceEEEec
Confidence 99999999843
No 248
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=96.13 E-value=0.015 Score=51.28 Aligned_cols=39 Identities=21% Similarity=0.189 Sum_probs=26.3
Q ss_pred CcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEE
Q 025715 118 CKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIA 165 (249)
Q Consensus 118 ~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~ 165 (249)
+.||+|+|--..-. .+. +....++....+.|+|||.|++
T Consensus 222 ~~fD~I~cRNvliy-----F~~----~~~~~vl~~l~~~L~pgG~L~l 260 (287)
T PRK10611 222 GPFDAIFCRNVMIY-----FDK----TTQERILRRFVPLLKPDGLLFA 260 (287)
T ss_pred CCcceeeHhhHHhc-----CCH----HHHHHHHHHHHHHhCCCcEEEE
Confidence 67999998532211 121 1234678888999999998876
No 249
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=95.84 E-value=0.056 Score=44.88 Aligned_cols=94 Identities=20% Similarity=0.179 Sum_probs=58.1
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC--------CC--CceEeecCCCChhhHH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP--------IE--GVIQVQGDITNARTAE 109 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~--------~~--~v~~~~gDi~~~~~~~ 109 (249)
-.|++|||+|+|+|--+.+.+... ...|++.|+.|... .. .+.+...|+..
T Consensus 78 VrgkrVLd~gagsgLvaIAaa~aG--------------A~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g----- 138 (218)
T COG3897 78 VRGKRVLDLGAGSGLVAIAAARAG--------------AAEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIG----- 138 (218)
T ss_pred cccceeeecccccChHHHHHHHhh--------------hHHHHhcCCChHHHHHhhcchhhccceeEEeeccccC-----
Confidence 458999999999999887777543 36888889887431 12 23444555543
Q ss_pred HHHHhcCCCcccEEEe-CCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCCC
Q 025715 110 VVIRHFDGCKADLVVC-DGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKD 172 (249)
Q Consensus 110 ~i~~~~~~~~~DlVls-D~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~ 172 (249)
.+..||+|++ |... ++.... ..+. ....|+-.|.-|+ ++.+.+
T Consensus 139 ------~~~~~Dl~LagDlfy--------~~~~a~----~l~~-~~~~l~~~g~~vl-vgdp~R 182 (218)
T COG3897 139 ------SPPAFDLLLAGDLFY--------NHTEAD----RLIP-WKDRLAEAGAAVL-VGDPGR 182 (218)
T ss_pred ------CCcceeEEEeeceec--------CchHHH----HHHH-HHHHHHhCCCEEE-EeCCCC
Confidence 3468999975 3221 221111 2222 5666777777777 676544
No 250
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=95.54 E-value=0.064 Score=48.17 Aligned_cols=95 Identities=27% Similarity=0.212 Sum_probs=65.4
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCC---C-CC-CCceEeecCCCChhhHHHHHHhc
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM---A-PI-EGVIQVQGDITNARTAEVVIRHF 115 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~---~-~~-~~v~~~~gDi~~~~~~~~i~~~~ 115 (249)
.-...+|+|.|.|..+-.+....+ ..+.+-.|+... + .+ +||..+.||.... +
T Consensus 177 ~v~~avDvGgGiG~v~k~ll~~fp-------------~ik~infdlp~v~~~a~~~~~gV~~v~gdmfq~-~-------- 234 (342)
T KOG3178|consen 177 GVNVAVDVGGGIGRVLKNLLSKYP-------------HIKGINFDLPFVLAAAPYLAPGVEHVAGDMFQD-T-------- 234 (342)
T ss_pred cCceEEEcCCcHhHHHHHHHHhCC-------------CCceeecCHHHHHhhhhhhcCCcceeccccccc-C--------
Confidence 347899999999999999888553 344444454432 1 24 7888888998763 1
Q ss_pred CCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEe
Q 025715 116 DGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (249)
Q Consensus 116 ~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~ 168 (249)
+ +-|+|+.- .+.+.|. |+. +.+.|+.+.+.|+|||.++++..
T Consensus 235 P--~~daI~mk---WiLhdwt-Ded-----cvkiLknC~~sL~~~GkIiv~E~ 276 (342)
T KOG3178|consen 235 P--KGDAIWMK---WILHDWT-DED-----CVKILKNCKKSLPPGGKIIVVEN 276 (342)
T ss_pred C--CcCeEEEE---eecccCC-hHH-----HHHHHHHHHHhCCCCCEEEEEec
Confidence 2 45677752 2334443 222 45789999999999999998765
No 251
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=95.32 E-value=0.031 Score=47.12 Aligned_cols=96 Identities=18% Similarity=0.079 Sum_probs=53.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC---------C-CCC-ceEeecCCCChhhHHH
Q 025715 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------P-IEG-VIQVQGDITNARTAEV 110 (249)
Q Consensus 42 g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~---------~-~~~-v~~~~gDi~~~~~~~~ 110 (249)
..+.||.|||-|..|..++.... -+|-.||..+.- . ..+ .++++.-+.+...
T Consensus 56 ~~~alDcGAGIGRVTk~lLl~~f--------------~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P--- 118 (218)
T PF05891_consen 56 FNRALDCGAGIGRVTKGLLLPVF--------------DEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTP--- 118 (218)
T ss_dssp -SEEEEET-TTTHHHHHTCCCC---------------SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG------
T ss_pred cceEEecccccchhHHHHHHHhc--------------CEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccC---
Confidence 46999999999999986643222 467667766510 0 112 2333333333211
Q ss_pred HHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEe
Q 025715 111 VIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (249)
Q Consensus 111 i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~ 168 (249)
..++||+|.+-= +.|. -.|+ -+...|..+...|+|||.+++|.-
T Consensus 119 -----~~~~YDlIW~QW---~lgh-LTD~-----dlv~fL~RCk~~L~~~G~IvvKEN 162 (218)
T PF05891_consen 119 -----EEGKYDLIWIQW---CLGH-LTDE-----DLVAFLKRCKQALKPNGVIVVKEN 162 (218)
T ss_dssp ------TT-EEEEEEES----GGG-S-HH-----HHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred -----CCCcEeEEEehH---hhcc-CCHH-----HHHHHHHHHHHhCcCCcEEEEEec
Confidence 236899999731 1221 1222 134678899999999999999843
No 252
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=95.32 E-value=0.06 Score=47.04 Aligned_cols=99 Identities=20% Similarity=0.138 Sum_probs=60.3
Q ss_pred CCeEEEEcCCCCh----HHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC----------------CC---------
Q 025715 42 VKRVVDLCAAPGS----WSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------------PI--------- 92 (249)
Q Consensus 42 g~~vLDLG~gpG~----~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~----------------~~--------- 92 (249)
.-+|.-.||++|- .+..+.+.++. ..+...+|+|.||+... .+
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~--------~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF 168 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGK--------LAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYF 168 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhcc--------ccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhE
Confidence 4689999999994 44445554431 00124689999998621 00
Q ss_pred ---------------CCceEeecCCCChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhc
Q 025715 93 ---------------EGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVL 157 (249)
Q Consensus 93 ---------------~~v~~~~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~L 157 (249)
..|.|-+.|+.+... ..+.||+|+|--..-. .+++ .+..++..-...|
T Consensus 169 ~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~--------~~~~fD~IfCRNVLIY-----Fd~~----~q~~il~~f~~~L 231 (268)
T COG1352 169 ERGGDGSYRVKEELRKMVRFRRHNLLDDSP--------FLGKFDLIFCRNVLIY-----FDEE----TQERILRRFADSL 231 (268)
T ss_pred eecCCCcEEEChHHhcccEEeecCCCCCcc--------ccCCCCEEEEcceEEe-----eCHH----HHHHHHHHHHHHh
Confidence 124455555555321 2357999999532111 2332 2345677778999
Q ss_pred cCCCEEEE
Q 025715 158 KEGGKFIA 165 (249)
Q Consensus 158 k~gG~lv~ 165 (249)
+|||.|++
T Consensus 232 ~~gG~Lfl 239 (268)
T COG1352 232 KPGGLLFL 239 (268)
T ss_pred CCCCEEEE
Confidence 99999997
No 253
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=95.14 E-value=0.025 Score=43.88 Aligned_cols=48 Identities=23% Similarity=0.268 Sum_probs=36.4
Q ss_pred eEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCC
Q 025715 44 RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITN 104 (249)
Q Consensus 44 ~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~ 104 (249)
+++|+||+.|.++..+++..+ .++|+++|.++.. .++++++++..+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~-------------~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGA-------------EGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCC-------------CCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeC
Confidence 489999999999999887653 4699999999832 13456667666655
No 254
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=95.12 E-value=0.03 Score=43.87 Aligned_cols=41 Identities=24% Similarity=0.232 Sum_probs=32.8
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCC
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM 89 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~ 89 (249)
.+..+|+|+|||-|..+.+++..+... .....|++||.++.
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~---------~~~~~v~~iD~~~~ 64 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNS---------SPNLRVLGIDCNES 64 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhc---------CCCCeEEEEECCcH
Confidence 467899999999999999999855311 13579999999974
No 255
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=95.12 E-value=0.17 Score=37.60 Aligned_cols=94 Identities=24% Similarity=0.280 Sum_probs=56.3
Q ss_pred EEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC------C--CC---ceEeecCCCChhhHHHHHH
Q 025715 45 VVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP------I--EG---VIQVQGDITNARTAEVVIR 113 (249)
Q Consensus 45 vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~------~--~~---v~~~~gDi~~~~~~~~i~~ 113 (249)
++|+|||+|..+ .+..... ....++++|+++... . .. +.+..+|..... .
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~------------~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~ 112 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGG------------RGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGV------L 112 (257)
T ss_pred eEEecCCcCHHH-HHHHhCC------------CCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCC------C
Confidence 999999999988 4444332 114788889887320 1 11 355666655410 0
Q ss_pred hcCC-CcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEec
Q 025715 114 HFDG-CKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFR 169 (249)
Q Consensus 114 ~~~~-~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~ 169 (249)
.+.. ..+|++.+....... . ....+..+.+.|+|+|.+++....
T Consensus 113 ~~~~~~~~d~~~~~~~~~~~-----~-------~~~~~~~~~~~l~~~g~~~~~~~~ 157 (257)
T COG0500 113 PFEDSASFDLVISLLVLHLL-----P-------PAKALRELLRVLKPGGRLVLSDLL 157 (257)
T ss_pred CCCCCCceeEEeeeeehhcC-----C-------HHHHHHHHHHhcCCCcEEEEEecc
Confidence 1233 378998332221111 1 134677888999999999987664
No 256
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=95.10 E-value=0.033 Score=48.77 Aligned_cols=48 Identities=19% Similarity=0.266 Sum_probs=35.8
Q ss_pred HHhhhhhcCcccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCC
Q 025715 29 LLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM 89 (249)
Q Consensus 29 L~ei~~~~~~~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~ 89 (249)
|.||.....-++| .+|||+|||||.-+-++.+..+ ...+++.+|.++.
T Consensus 22 l~El~~r~p~f~P-~~vLD~GsGpGta~wAa~~~~~------------~~~~~~~vd~s~~ 69 (274)
T PF09243_consen 22 LSELRKRLPDFRP-RSVLDFGSGPGTALWAAREVWP------------SLKEYTCVDRSPE 69 (274)
T ss_pred HHHHHHhCcCCCC-ceEEEecCChHHHHHHHHHHhc------------CceeeeeecCCHH
Confidence 5566666655566 5999999999998777776654 2358899999874
No 257
>PF06016 Reovirus_L2: Reovirus core-spike protein lambda-2 (L2); InterPro: IPR010311 This family consists of several Reovirus core-spike protein lambda-2 (L2) sequences. The reovirus L2 genome segment encodes the core spike protein lambda-2, which mediates enzymatic reactions in 5' capping of the viral plus-strand transcripts [].; GO: 0004482 mRNA (guanine-N7-)-methyltransferase activity, 0004484 mRNA guanylyltransferase activity, 0005524 ATP binding, 0006370 mRNA capping, 0019028 viral capsid; PDB: 1EJ6_A 3IYL_W 3K1Q_A.
Probab=95.02 E-value=0.059 Score=55.50 Aligned_cols=99 Identities=20% Similarity=0.224 Sum_probs=62.2
Q ss_pred cCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEec-C-CCHHHHHHHHhcCCCeeEEecC
Q 025715 115 FDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFR-G-KDTSLLYCQLKLFFPVVTFAKP 192 (249)
Q Consensus 115 ~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~-~-~~~~~l~~~l~~~f~~v~~~kP 192 (249)
++.+.|.+|.||.--...|. .+-..+.+...+++..++++..+||.+|+|+-= . .-...+...+..+|..+.++||
T Consensus 565 ~pTGtf~fVYSDVDQV~dg~--~dl~As~r~~~~~l~~~l~~tt~GG~~v~KiNFPT~~vW~~if~~~s~~~~~~~ivKP 642 (1289)
T PF06016_consen 565 FPTGTFTFVYSDVDQVQDGG--DDLVASNRAAISQLDVALQMTTAGGSTVVKINFPTRAVWTQIFRQYSPRFTSYHIVKP 642 (1289)
T ss_dssp -S---EEEEEEE-----SST--TTHHHHHHHHHHHHHHHHHHEEEEEEEEEEESS--CCHHHHHHHHCCCCECEEEEEEE
T ss_pred CCCCceEEEEecchhhccCC--cchhhhhHHHHHHHHHHHHhhcCCceEEEEEcCCChHHHHHHHHHhccccceeeEecc
Confidence 56789999999963212222 344455667788899999999999999999852 2 2255676666777999999999
Q ss_pred CCCCCCCceEEEEEeeccCCCCCCc
Q 025715 193 KSSRNSSIEAFAVCENYFPPEGFNP 217 (249)
Q Consensus 193 ~~sr~~s~E~y~v~~g~~~~~~~~~ 217 (249)
.-.+ |.|+|++--+........+
T Consensus 643 lI~N--NvEvflv~~~~~~~~~~~~ 665 (1289)
T PF06016_consen 643 LIVN--NVEVFLVFGGRTPSGNLTP 665 (1289)
T ss_dssp ESSS--S--EEEEECECSTT----B
T ss_pred eeec--ceEEEEEEEeecCCCCCCC
Confidence 8764 6899999444434454443
No 258
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.78 E-value=0.21 Score=44.59 Aligned_cols=102 Identities=15% Similarity=0.166 Sum_probs=62.5
Q ss_pred cCCCeEEEEcCCCChHHHH-HHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC----CCCceEeecCCC--ChhhH-HHH
Q 025715 40 EGVKRVVDLCAAPGSWSQV-LSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----IEGVIQVQGDIT--NARTA-EVV 111 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~-l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~----~~~v~~~~gDi~--~~~~~-~~i 111 (249)
++|.+||=+||||=|.... .++.++ ..+|+.+|+.+.+. .-|.+.+.-+-. +++.. +.+
T Consensus 168 k~Gs~vLV~GAGPIGl~t~l~Aka~G-------------A~~VVi~d~~~~Rle~Ak~~Ga~~~~~~~~~~~~~~~~~~v 234 (354)
T KOG0024|consen 168 KKGSKVLVLGAGPIGLLTGLVAKAMG-------------ASDVVITDLVANRLELAKKFGATVTDPSSHKSSPQELAELV 234 (354)
T ss_pred ccCCeEEEECCcHHHHHHHHHHHHcC-------------CCcEEEeecCHHHHHHHHHhCCeEEeeccccccHHHHHHHH
Confidence 6789999999999666554 566665 47999999998541 113322211111 22222 223
Q ss_pred HHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCC
Q 025715 112 IRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGK 171 (249)
Q Consensus 112 ~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~ 171 (249)
...+....+|+++ +++|.. ..++.|...+++||++++-.+.++
T Consensus 235 ~~~~g~~~~d~~~-----dCsG~~------------~~~~aai~a~r~gGt~vlvg~g~~ 277 (354)
T KOG0024|consen 235 EKALGKKQPDVTF-----DCSGAE------------VTIRAAIKATRSGGTVVLVGMGAE 277 (354)
T ss_pred HhhccccCCCeEE-----EccCch------------HHHHHHHHHhccCCEEEEeccCCC
Confidence 3334445577776 455541 346678899999999887665443
No 259
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=94.58 E-value=0.0088 Score=51.86 Aligned_cols=61 Identities=21% Similarity=0.238 Sum_probs=34.6
Q ss_pred EeecCCCChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEE
Q 025715 97 QVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (249)
Q Consensus 97 ~~~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k 166 (249)
++..|+++.+.+.... .+ +.++|+|++-....... .+ .+.+..++....++|||||.|++-
T Consensus 138 Vv~cDV~~~~pl~~~~-~~-p~~~D~v~s~fcLE~a~-~d------~~~y~~al~ni~~lLkpGG~Lil~ 198 (256)
T PF01234_consen 138 VVPCDVTQPNPLDPPV-VL-PPKFDCVISSFCLESAC-KD------LDEYRRALRNISSLLKPGGHLILA 198 (256)
T ss_dssp EEE--TTSSSTTTTS--SS--SSEEEEEEESSHHHH--SS------HHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred EEEeeccCCCCCCccc-cC-ccchhhhhhhHHHHHHc-CC------HHHHHHHHHHHHHHcCCCcEEEEE
Confidence 4567777765421100 01 13599998865322110 11 223567889999999999999974
No 260
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=94.54 E-value=0.28 Score=42.76 Aligned_cols=108 Identities=13% Similarity=0.128 Sum_probs=53.9
Q ss_pred CeEEEEcCCC--ChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC---------CCCC--ceEeecCCCChhhHH
Q 025715 43 KRVVDLCAAP--GSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------PIEG--VIQVQGDITNARTAE 109 (249)
Q Consensus 43 ~~vLDLG~gp--G~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~---------~~~~--v~~~~gDi~~~~~~~ 109 (249)
..+||||||= -+-.-.+++... ++++|+=||..|+. .-++ ..++++|+++++.+-
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~------------P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL 137 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVA------------PDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAIL 137 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-------------TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHH
T ss_pred ceEEEcccCCCCCCCHhHHHHhhC------------CCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHh
Confidence 5799999983 223334556655 67999999999952 1244 678999999986531
Q ss_pred H---HHHhcC-CCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCC
Q 025715 110 V---VIRHFD-GCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGK 171 (249)
Q Consensus 110 ~---i~~~~~-~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~ 171 (249)
. +...+. ++.+-+++... ..... +.+.. ..++..-...|.||..|+++.....
T Consensus 138 ~~p~~~~~lD~~rPVavll~~v-Lh~v~--D~~dp------~~iv~~l~d~lapGS~L~ish~t~d 194 (267)
T PF04672_consen 138 AHPEVRGLLDFDRPVAVLLVAV-LHFVP--DDDDP------AGIVARLRDALAPGSYLAISHATDD 194 (267)
T ss_dssp CSHHHHCC--TTS--EEEECT--GGGS---CGCTH------HHHHHHHHCCS-TT-EEEEEEEB-T
T ss_pred cCHHHHhcCCCCCCeeeeeeee-eccCC--CccCH------HHHHHHHHHhCCCCceEEEEecCCC
Confidence 1 111121 23444444432 22211 11111 2456667889999999999877554
No 261
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=94.51 E-value=0.28 Score=44.88 Aligned_cols=117 Identities=15% Similarity=0.097 Sum_probs=73.3
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCC----CCC-----C-----------------CCCCCCCeEEEecCCCCC---
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAK----LSP-----D-----------------SREGDLPLIVAIDLQPMA--- 90 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~----~~~-----~-----------------~~~~~~~~vvavDi~~~~--- 90 (249)
+++..++|-=||+|.+..-++.......+ .++ . ..+.+-..++|+|+++-.
T Consensus 190 ~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~ 269 (381)
T COG0116 190 KPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEG 269 (381)
T ss_pred CCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHH
Confidence 35679999999999999877654321110 000 0 001111157799999832
Q ss_pred --------CC-CCceEeecCCCChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCC
Q 025715 91 --------PI-EGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGG 161 (249)
Q Consensus 91 --------~~-~~v~~~~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG 161 (249)
.+ .-++|.++|+++... .+ +.+|+|+||++ .|.+-.++.....|+......+.+.++.-+
T Consensus 270 Ak~NA~~AGv~d~I~f~~~d~~~l~~------~~--~~~gvvI~NPP---YGeRlg~~~~v~~LY~~fg~~lk~~~~~ws 338 (381)
T COG0116 270 AKANARAAGVGDLIEFKQADATDLKE------PL--EEYGVVISNPP---YGERLGSEALVAKLYREFGRTLKRLLAGWS 338 (381)
T ss_pred HHHHHHhcCCCceEEEEEcchhhCCC------CC--CcCCEEEeCCC---cchhcCChhhHHHHHHHHHHHHHHHhcCCc
Confidence 12 347899999988542 11 58999999974 344444444444577666667778888777
Q ss_pred EEEEEE
Q 025715 162 KFIAKI 167 (249)
Q Consensus 162 ~lv~k~ 167 (249)
.+++..
T Consensus 339 ~~v~tt 344 (381)
T COG0116 339 RYVFTT 344 (381)
T ss_pred eEEEEc
Confidence 777643
No 262
>KOG2730 consensus Methylase [General function prediction only]
Probab=94.51 E-value=0.052 Score=45.90 Aligned_cols=67 Identities=21% Similarity=0.314 Sum_probs=44.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC--------C---C-CCceEeecCCCChhhHH
Q 025715 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--------P---I-EGVIQVQGDITNARTAE 109 (249)
Q Consensus 42 g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~--------~---~-~~v~~~~gDi~~~~~~~ 109 (249)
...|+|.-||-||-+...+.+. +.|+++|++|.+ . + .+|+|++||+.+.-.-.
T Consensus 95 ~~~iidaf~g~gGntiqfa~~~---------------~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~l 159 (263)
T KOG2730|consen 95 AEVIVDAFCGVGGNTIQFALQG---------------PYVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKL 159 (263)
T ss_pred cchhhhhhhcCCchHHHHHHhC---------------CeEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHH
Confidence 3678888888777776655443 689999999953 1 2 36899999998753222
Q ss_pred HHHHhcCCCcccEEEeCC
Q 025715 110 VVIRHFDGCKADLVVCDG 127 (249)
Q Consensus 110 ~i~~~~~~~~~DlVlsD~ 127 (249)
+ +....+|+|..-+
T Consensus 160 q----~~K~~~~~vf~sp 173 (263)
T KOG2730|consen 160 K----ADKIKYDCVFLSP 173 (263)
T ss_pred h----hhhheeeeeecCC
Confidence 2 1223477777544
No 263
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=94.14 E-value=0.066 Score=46.87 Aligned_cols=66 Identities=24% Similarity=0.300 Sum_probs=45.6
Q ss_pred CeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC------CCCceEeecCCCChhhHHHHHHhcC
Q 025715 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP------IEGVIQVQGDITNARTAEVVIRHFD 116 (249)
Q Consensus 43 ~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~------~~~v~~~~gDi~~~~~~~~i~~~~~ 116 (249)
.+|+||+||.|+++..+.+. + -..|.++|+++.+. .++. .+.+|+.+.... .+
T Consensus 1 ~~v~dLFsG~Gg~~~gl~~~-G-------------~~~v~a~e~~~~a~~~~~~N~~~~-~~~~Di~~~~~~-----~~- 59 (275)
T cd00315 1 LRVIDLFAGIGGFRLGLEKA-G-------------FEIVAANEIDKSAAETYEANFPNK-LIEGDITKIDEK-----DF- 59 (275)
T ss_pred CcEEEEccCcchHHHHHHHc-C-------------CEEEEEEeCCHHHHHHHHHhCCCC-CccCccccCchh-----hc-
Confidence 37999999999999887653 2 14678999998541 2332 567888875421 11
Q ss_pred CCcccEEEeCCCC
Q 025715 117 GCKADLVVCDGAP 129 (249)
Q Consensus 117 ~~~~DlVlsD~~~ 129 (249)
...+|+|+.++++
T Consensus 60 ~~~~D~l~~gpPC 72 (275)
T cd00315 60 IPDIDLLTGGFPC 72 (275)
T ss_pred CCCCCEEEeCCCC
Confidence 2469999988754
No 264
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=93.96 E-value=0.12 Score=48.98 Aligned_cols=132 Identities=18% Similarity=0.173 Sum_probs=74.5
Q ss_pred cchhhhhhHH-hhhhhcCcccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC--------C
Q 025715 21 WRARSAFKLL-QIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--------P 91 (249)
Q Consensus 21 ~~~ra~~KL~-ei~~~~~~~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~--------~ 91 (249)
|-+|+..+|+ ++..- .+..+|.|-+||+|++...+.+.++... ....++|.++++.. .
T Consensus 169 yTP~~v~~liv~~l~~----~~~~~i~DpacGsgg~l~~a~~~~~~~~---------~~~~~yGqE~~~~t~~l~~mN~~ 235 (489)
T COG0286 169 YTPREVSELIVELLDP----EPRNSIYDPACGSGGMLLQAAKYLKRHQ---------DEIFIYGQEINDTTYRLAKMNLI 235 (489)
T ss_pred CChHHHHHHHHHHcCC----CCCCeecCCCCchhHHHHHHHHHHHhhc---------cceeEEEEeCCHHHHHHHHHHHH
Confidence 4566655553 22211 4677999999999999998888875210 03678999987631 1
Q ss_pred CCCc----eEeecCCCChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcC------H----HH---H-HHHHHHHHHHH
Q 025715 92 IEGV----IQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMD------E----FV---Q-SQLILAGLTVV 153 (249)
Q Consensus 92 ~~~v----~~~~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~------~----~~---~-~~l~~~~l~~a 153 (249)
+.++ ....+|-...+.... ....+.||+|+++++++..+-.... . .. . ..--.+.+..+
T Consensus 236 lhgi~~~~~i~~~dtl~~~~~~~---~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~ 312 (489)
T COG0286 236 LHGIEGDANIRHGDTLSNPKHDD---KDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHI 312 (489)
T ss_pred HhCCCccccccccccccCCcccc---cCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHH
Confidence 2222 233444332221100 1133679999999977522211100 0 00 0 00114567788
Q ss_pred HHhccCCCEEEEEEe
Q 025715 154 THVLKEGGKFIAKIF 168 (249)
Q Consensus 154 ~~~Lk~gG~lv~k~~ 168 (249)
...|+|||+..+.+.
T Consensus 313 ~~~l~~~g~aaivl~ 327 (489)
T COG0286 313 LYKLKPGGRAAIVLP 327 (489)
T ss_pred HHhcCCCceEEEEec
Confidence 889999997766544
No 265
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=93.85 E-value=0.054 Score=49.39 Aligned_cols=96 Identities=23% Similarity=0.197 Sum_probs=64.6
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC-----------CC-CceEeecCCCChhh
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP-----------IE-GVIQVQGDITNART 107 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~-----------~~-~v~~~~gDi~~~~~ 107 (249)
.++..++|+|||-|+.+.++...- ...++++|.++... +. ...+..+|+.+.+
T Consensus 109 ~~~~~~~~~~~g~~~~~~~i~~f~--------------~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~- 173 (364)
T KOG1269|consen 109 FPGSKVLDVGTGVGGPSRYIAVFK--------------KAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMP- 173 (364)
T ss_pred cccccccccCcCcCchhHHHHHhc--------------cCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCC-
Confidence 577899999999999999998754 37889999987421 11 1223445655533
Q ss_pred HHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEe
Q 025715 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (249)
Q Consensus 108 ~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~ 168 (249)
+.+..||.|-+-=. ++ +-.+. ...+++..+.++|||.++++.+
T Consensus 174 -------fedn~fd~v~~ld~--~~--~~~~~-------~~~y~Ei~rv~kpGG~~i~~e~ 216 (364)
T KOG1269|consen 174 -------FEDNTFDGVRFLEV--VC--HAPDL-------EKVYAEIYRVLKPGGLFIVKEW 216 (364)
T ss_pred -------CCccccCcEEEEee--cc--cCCcH-------HHHHHHHhcccCCCceEEeHHH
Confidence 45678888865321 11 11232 3567888999999999998754
No 266
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=93.77 E-value=0.89 Score=36.81 Aligned_cols=109 Identities=17% Similarity=0.129 Sum_probs=66.3
Q ss_pred EEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC----------------CCCceEe-ecCCCChhhHH
Q 025715 47 DLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----------------IEGVIQV-QGDITNARTAE 109 (249)
Q Consensus 47 DLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~----------------~~~v~~~-~gDi~~~~~~~ 109 (249)
=+|.|-=+||..+++..+ ....++|-....... -.|+.++ .-|.++.....
T Consensus 2 lvGeGdfSFs~sL~~~~~------------~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~ 69 (166)
T PF10354_consen 2 LVGEGDFSFSLSLARAFG------------SATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHF 69 (166)
T ss_pred eeeccchHHHHHHHHHcC------------CCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccc
Confidence 367888888888888765 234566655443210 1244333 34666644211
Q ss_pred HHHHhcCCCcccEEEeCCCCCCCCCCCcCH--HHHHHHHHHHHHHHHHhccCCCEEEEEEecCC
Q 025715 110 VVIRHFDGCKADLVVCDGAPDVTGLHDMDE--FVQSQLILAGLTVVTHVLKEGGKFIAKIFRGK 171 (249)
Q Consensus 110 ~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~--~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~ 171 (249)
.+....||.|+=|-+....+..+... ....+|+...+..|.++|+++|.+.+.+..+.
T Consensus 70 ----~~~~~~FDrIiFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~ 129 (166)
T PF10354_consen 70 ----RLKNQRFDRIIFNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQ 129 (166)
T ss_pred ----cccCCcCCEEEEeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 12567899999886432211211111 12345788899999999999999999887653
No 267
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=93.40 E-value=0.61 Score=39.52 Aligned_cols=111 Identities=18% Similarity=0.164 Sum_probs=73.3
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCC--CCCCC---CCceEeecCCCChhhHHHHHH--
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQ--PMAPI---EGVIQVQGDITNARTAEVVIR-- 113 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~--~~~~~---~~v~~~~gDi~~~~~~~~i~~-- 113 (249)
....||=.||..||..-+++..+.+ ++..|+|.-.+ +|..+ .|+....-|+++++.......
T Consensus 6 ~~k~VlItgcs~GGIG~ala~ef~~-----------~G~~V~AtaR~~e~M~~L~~~~gl~~~kLDV~~~~~V~~v~~ev 74 (289)
T KOG1209|consen 6 QPKKVLITGCSSGGIGYALAKEFAR-----------NGYLVYATARRLEPMAQLAIQFGLKPYKLDVSKPEEVVTVSGEV 74 (289)
T ss_pred CCCeEEEeecCCcchhHHHHHHHHh-----------CCeEEEEEccccchHhhHHHhhCCeeEEeccCChHHHHHHHHHH
Confidence 3468999999999999999887763 35688887665 45443 477788899999876544322
Q ss_pred -hcCCCcccEEEeCCCCCCCCCC-CcCHHH-----------HHHHHHHHHHHHHHhccCCCEEEE
Q 025715 114 -HFDGCKADLVVCDGAPDVTGLH-DMDEFV-----------QSQLILAGLTVVTHVLKEGGKFIA 165 (249)
Q Consensus 114 -~~~~~~~DlVlsD~~~~~~g~~-~~~~~~-----------~~~l~~~~l~~a~~~Lk~gG~lv~ 165 (249)
.++.++.|+.+.|..-+|++.- +.+-.. .++++++. ...+.|..|++|-
T Consensus 75 r~~~~Gkld~L~NNAG~~C~~Pa~d~~i~ave~~f~vNvfG~irM~~a~---~h~likaKGtIVn 136 (289)
T KOG1209|consen 75 RANPDGKLDLLYNNAGQSCTFPALDATIAAVEQCFKVNVFGHIRMCRAL---SHFLIKAKGTIVN 136 (289)
T ss_pred hhCCCCceEEEEcCCCCCcccccccCCHHHHHhhhccceeeeehHHHHH---HHHHHHccceEEE
Confidence 2367899999999865555421 111111 23344322 2557788898884
No 268
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=93.13 E-value=0.35 Score=43.16 Aligned_cols=72 Identities=22% Similarity=0.232 Sum_probs=48.8
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC---------C-CCCceEeecCCCChhhHH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------P-IEGVIQVQGDITNARTAE 109 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~---------~-~~~v~~~~gDi~~~~~~~ 109 (249)
+++..++|.=-|.||.|..+++.++ .++++|+|.++.+ . -.++.+++++..+...
T Consensus 19 ~~~g~~vD~T~G~GGHS~aiL~~~~-------------~~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F~~l~~-- 83 (310)
T PF01795_consen 19 KPGGIYVDCTFGGGGHSKAILEKLP-------------NGRLIGIDRDPEALERAKERLKKFDDRFIFIHGNFSNLDE-- 83 (310)
T ss_dssp -TT-EEEETT-TTSHHHHHHHHT-T-------------T-EEEEEES-HHHHHHHHCCTCCCCTTEEEEES-GGGHHH--
T ss_pred CCCceEEeecCCcHHHHHHHHHhCC-------------CCeEEEecCCHHHHHHHHHHHhhccceEEEEeccHHHHHH--
Confidence 6778999999999999999999885 4999999999843 1 2468888998877543
Q ss_pred HHHHhc-CCCcccEEEeCC
Q 025715 110 VVIRHF-DGCKADLVVCDG 127 (249)
Q Consensus 110 ~i~~~~-~~~~~DlVlsD~ 127 (249)
+.... ...++|-|+.|.
T Consensus 84 -~l~~~~~~~~~dgiL~DL 101 (310)
T PF01795_consen 84 -YLKELNGINKVDGILFDL 101 (310)
T ss_dssp -HHHHTTTTS-EEEEEEE-
T ss_pred -HHHHccCCCccCEEEEcc
Confidence 33333 446899999995
No 269
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=92.75 E-value=0.4 Score=43.65 Aligned_cols=104 Identities=18% Similarity=0.135 Sum_probs=67.2
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC------------------CCCCceEeecC
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------------------PIEGVIQVQGD 101 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~------------------~~~~v~~~~gD 101 (249)
+.-.+||=||.|-|-=...+.+. + .-.+|+-||++|.. .-++++.+..|
T Consensus 288 ~~a~~vLvlGGGDGLAlRellky-P------------~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dD 354 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLKY-P------------QVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDD 354 (508)
T ss_pred cccceEEEEcCCchHHHHHHHhC-C------------CcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEecc
Confidence 44578999999988654444432 2 35789999999831 12567778888
Q ss_pred CCChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHH-HHHHHHHHHhccCCCEEEEEEecC
Q 025715 102 ITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLI-LAGLTVVTHVLKEGGKFIAKIFRG 170 (249)
Q Consensus 102 i~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~-~~~l~~a~~~Lk~gG~lv~k~~~~ 170 (249)
..+.- .. ....||.|+.|..-. +.....+++ ......+.+.|+++|.+|+..-++
T Consensus 355 Af~wl-----r~--a~~~fD~vIVDl~DP-------~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~ 410 (508)
T COG4262 355 AFQWL-----RT--AADMFDVVIVDLPDP-------STPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSP 410 (508)
T ss_pred HHHHH-----Hh--hcccccEEEEeCCCC-------CCcchhhhhhHHHHHHHHHhcCcCceEEEecCCC
Confidence 76642 11 235899999997421 111122332 345667889999999999875443
No 270
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=92.55 E-value=0.96 Score=35.95 Aligned_cols=99 Identities=20% Similarity=0.171 Sum_probs=54.6
Q ss_pred CeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC----CCCCceEeecCCCChhhHHHHHHhcCCC
Q 025715 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----PIEGVIQVQGDITNARTAEVVIRHFDGC 118 (249)
Q Consensus 43 ~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~----~~~~v~~~~gDi~~~~~~~~i~~~~~~~ 118 (249)
.-||+||=|.|---.++.+.++ +..|+++|..-.. .-+.-.+++||+.+ ++.. ...++ .
T Consensus 30 G~VlElGLGNGRTydHLRe~~p-------------~R~I~vfDR~l~~hp~~~P~~~~~ilGdi~~--tl~~-~~~~g-~ 92 (160)
T PF12692_consen 30 GPVLELGLGNGRTYDHLREIFP-------------DRRIYVFDRALACHPSSTPPEEDLILGDIRE--TLPA-LARFG-A 92 (160)
T ss_dssp S-EEEE--TTSHHHHHHHHH---------------SS-EEEEESS--S-GGG---GGGEEES-HHH--HHHH-HHHH--S
T ss_pred CceEEeccCCCccHHHHHHhCC-------------CCeEEEEeeecccCCCCCCchHheeeccHHH--HhHH-HHhcC-C
Confidence 4899999999999999999986 6799999986432 11234578999865 3333 23344 6
Q ss_pred cccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEE
Q 025715 119 KADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIA 165 (249)
Q Consensus 119 ~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~ 165 (249)
+.-++.+|... |.++.+.. ....+--.+-.+|.|||.+|.
T Consensus 93 ~a~laHaD~G~---g~~~~d~a----~a~~lspli~~~la~gGi~vS 132 (160)
T PF12692_consen 93 GAALAHADIGT---GDKEKDDA----TAAWLSPLIAPVLAPGGIMVS 132 (160)
T ss_dssp -EEEEEE-------S-HHHHHH----HHHHHHHHHGGGEEEEEEEEE
T ss_pred ceEEEEeecCC---CCcchhHH----HHHhhhHHHHHHhcCCcEEEe
Confidence 78999999642 32222211 112223345679999998875
No 271
>PRK08177 short chain dehydrogenase; Provisional
Probab=92.49 E-value=3.2 Score=34.43 Aligned_cols=73 Identities=15% Similarity=0.180 Sum_probs=51.8
Q ss_pred eEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----CCCCceEeecCCCChhhHHHHHHhcCCC
Q 025715 44 RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----PIEGVIQVQGDITNARTAEVVIRHFDGC 118 (249)
Q Consensus 44 ~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----~~~~v~~~~gDi~~~~~~~~i~~~~~~~ 118 (249)
+||=.|+ +|+....+++++.. .+..|++++.++.. ...++.+...|+.+.+....+.+.+..+
T Consensus 3 ~vlItG~-sg~iG~~la~~l~~-----------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~ 70 (225)
T PRK08177 3 TALIIGA-SRGLGLGLVDRLLE-----------RGWQVTATVRGPQQDTALQALPGVHIEKLDMNDPASLDQLLQRLQGQ 70 (225)
T ss_pred EEEEeCC-CchHHHHHHHHHHh-----------CCCEEEEEeCCCcchHHHHhccccceEEcCCCCHHHHHHHHHHhhcC
Confidence 4555554 67888887777642 23589999988743 1345677889999988777776666556
Q ss_pred cccEEEeCCC
Q 025715 119 KADLVVCDGA 128 (249)
Q Consensus 119 ~~DlVlsD~~ 128 (249)
.+|.|+.+..
T Consensus 71 ~id~vi~~ag 80 (225)
T PRK08177 71 RFDLLFVNAG 80 (225)
T ss_pred CCCEEEEcCc
Confidence 7999998864
No 272
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=92.29 E-value=3.4 Score=35.23 Aligned_cols=78 Identities=17% Similarity=0.041 Sum_probs=52.5
Q ss_pred CCCeEEEEcCCC-ChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC---------CCCCceEeecCCCChhhHHH
Q 025715 41 GVKRVVDLCAAP-GSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------PIEGVIQVQGDITNARTAEV 110 (249)
Q Consensus 41 ~g~~vLDLG~gp-G~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~---------~~~~v~~~~gDi~~~~~~~~ 110 (249)
.|+++|=.|+++ ++....+++++.. ....|+.++.+... .+..+.+++.|+++.+..+.
T Consensus 9 ~~k~~lItGas~g~GIG~a~a~~la~-----------~G~~v~l~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~ 77 (258)
T PRK07533 9 AGKRGLVVGIANEQSIAWGCARAFRA-----------LGAELAVTYLNDKARPYVEPLAEELDAPIFLPLDVREPGQLEA 77 (258)
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHH-----------cCCEEEEEeCChhhHHHHHHHHHhhccceEEecCcCCHHHHHH
Confidence 467899999998 4888888877642 23577777776421 12334567899999876655
Q ss_pred HHHhcC--CCcccEEEeCCCC
Q 025715 111 VIRHFD--GCKADLVVCDGAP 129 (249)
Q Consensus 111 i~~~~~--~~~~DlVlsD~~~ 129 (249)
+.+.+. -+++|+++.+...
T Consensus 78 ~~~~~~~~~g~ld~lv~nAg~ 98 (258)
T PRK07533 78 VFARIAEEWGRLDFLLHSIAF 98 (258)
T ss_pred HHHHHHHHcCCCCEEEEcCcc
Confidence 443321 1479999998753
No 273
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=91.85 E-value=0.93 Score=43.29 Aligned_cols=132 Identities=15% Similarity=0.173 Sum_probs=75.9
Q ss_pred CCCChhHHHHHHhccchhhhhhHHhhhhhcCc----------ccCCCeEEEEcCCCChHHHH-HHHHhcCCCCCCCCCCC
Q 025715 7 DKRDIYYRKAKEEGWRARSAFKLLQIDEEFNI----------FEGVKRVVDLCAAPGSWSQV-LSRKLYLPAKLSPDSRE 75 (249)
Q Consensus 7 ~~~d~~~~~a~~~~~~~ra~~KL~ei~~~~~~----------~~~g~~vLDLG~gpG~~s~~-l~~~~~~~~~~~~~~~~ 75 (249)
++.|-+.+++...||++ ..+--+.++- ..++.+|+=+|+|+=|.... .++.++
T Consensus 125 q~~d~lssma~IAGy~A-----v~~aa~~~~~~~~g~~taaG~~pg~kVlViGaG~iGL~Ai~~Ak~lG----------- 188 (509)
T PRK09424 125 QSLDALSSMANIAGYRA-----VIEAAHEFGRFFTGQITAAGKVPPAKVLVIGAGVAGLAAIGAAGSLG----------- 188 (509)
T ss_pred CCcccccchhhhhHHHH-----HHHHHHHhcccCCCceeccCCcCCCEEEEECCcHHHHHHHHHHHHCC-----------
Confidence 56688999999999875 2333233321 14689999999999776654 555655
Q ss_pred CCCCeEEEecCCCCCC----CCCceEeecCCCC-------------hhhHHHHHHhcCC--CcccEEEeCCCCCCCCCCC
Q 025715 76 GDLPLIVAIDLQPMAP----IEGVIQVQGDITN-------------ARTAEVVIRHFDG--CKADLVVCDGAPDVTGLHD 136 (249)
Q Consensus 76 ~~~~~vvavDi~~~~~----~~~v~~~~gDi~~-------------~~~~~~i~~~~~~--~~~DlVlsD~~~~~~g~~~ 136 (249)
..|+++|+++.+. --|.+++.-|..+ .+..+...+.+.+ +.+|+|+.-... .+.+.
T Consensus 189 ---A~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~~~~~~~gaDVVIetag~--pg~~a 263 (509)
T PRK09424 189 ---AIVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMALFAEQAKEVDIIITTALI--PGKPA 263 (509)
T ss_pred ---CEEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHHHHHhccCCCCEEEECCCC--CcccC
Confidence 5899999998431 1244433222211 0111111111221 469999864321 11111
Q ss_pred cCHHHHHHHHHHHHHHHHHhccCCCEEEEEEe
Q 025715 137 MDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (249)
Q Consensus 137 ~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~ 168 (249)
.. ...+.+.+.+||||.++.--.
T Consensus 264 P~---------lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 264 PK---------LITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred cc---------hHHHHHHHhcCCCCEEEEEcc
Confidence 10 124778899999999886433
No 274
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=91.71 E-value=0.084 Score=46.53 Aligned_cols=65 Identities=23% Similarity=0.363 Sum_probs=43.4
Q ss_pred CeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC------CCCceEeecCCCChhhHHHHHHhcC
Q 025715 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP------IEGVIQVQGDITNARTAEVVIRHFD 116 (249)
Q Consensus 43 ~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~------~~~v~~~~gDi~~~~~~~~i~~~~~ 116 (249)
.+|+||+||-||++..+.+... -.+.|+|+++.+. .+ ....+||++.... .++
T Consensus 1 ~~~~dlFsG~Gg~~~g~~~ag~--------------~~~~a~e~~~~a~~~y~~N~~--~~~~~Di~~~~~~-----~l~ 59 (335)
T PF00145_consen 1 MKVIDLFSGIGGFSLGLEQAGF--------------EVVWAVEIDPDACETYKANFP--EVICGDITEIDPS-----DLP 59 (335)
T ss_dssp EEEEEET-TTTHHHHHHHHTTE--------------EEEEEEESSHHHHHHHHHHHT--EEEESHGGGCHHH-----HHH
T ss_pred CcEEEEccCccHHHHHHHhcCc--------------EEEEEeecCHHHHHhhhhccc--ccccccccccccc-----ccc
Confidence 4799999999999988875421 3678999998541 23 6678999886542 234
Q ss_pred CCcccEEEeCCCC
Q 025715 117 GCKADLVVCDGAP 129 (249)
Q Consensus 117 ~~~~DlVlsD~~~ 129 (249)
. .+|+++.-++|
T Consensus 60 ~-~~D~l~ggpPC 71 (335)
T PF00145_consen 60 K-DVDLLIGGPPC 71 (335)
T ss_dssp H-T-SEEEEE---
T ss_pred c-cceEEEeccCC
Confidence 3 59999976543
No 275
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=91.64 E-value=1.1 Score=40.60 Aligned_cols=88 Identities=17% Similarity=0.154 Sum_probs=54.6
Q ss_pred cCCCeEEEEcCC-CChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC-----CCCceEeecCCCChhhHHHHHH
Q 025715 40 EGVKRVVDLCAA-PGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP-----IEGVIQVQGDITNARTAEVVIR 113 (249)
Q Consensus 40 ~~g~~vLDLG~g-pG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~-----~~~v~~~~gDi~~~~~~~~i~~ 113 (249)
+||.+|+=.|+| -|.....+++.++ .+|+++|+++.+. +-...++... +.+..+.+.
T Consensus 165 ~pG~~V~I~G~GGlGh~avQ~Aka~g--------------a~Via~~~~~~K~e~a~~lGAd~~i~~~--~~~~~~~~~- 227 (339)
T COG1064 165 KPGKWVAVVGAGGLGHMAVQYAKAMG--------------AEVIAITRSEEKLELAKKLGADHVINSS--DSDALEAVK- 227 (339)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcC--------------CeEEEEeCChHHHHHHHHhCCcEEEEcC--CchhhHHhH-
Confidence 689999999988 1222223455554 7999999998642 2112233322 333322222
Q ss_pred hcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEE
Q 025715 114 HFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (249)
Q Consensus 114 ~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k 166 (249)
+.+|+|+.-.. . ..+..+.+.|++||++++-
T Consensus 228 ----~~~d~ii~tv~-~-----------------~~~~~~l~~l~~~G~~v~v 258 (339)
T COG1064 228 ----EIADAIIDTVG-P-----------------ATLEPSLKALRRGGTLVLV 258 (339)
T ss_pred ----hhCcEEEECCC-h-----------------hhHHHHHHHHhcCCEEEEE
Confidence 23999986432 1 2467789999999999984
No 276
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=90.84 E-value=0.43 Score=43.55 Aligned_cols=46 Identities=28% Similarity=0.325 Sum_probs=35.0
Q ss_pred HHhhhhhcCcccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCC
Q 025715 29 LLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQP 88 (249)
Q Consensus 29 L~ei~~~~~~~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~ 88 (249)
|.|+-.+...+.+-..|+|+|+|+|..++.++-..+ -.|+|||-+.
T Consensus 141 lselvSsi~~f~gi~~vvD~GaG~G~LSr~lSl~y~--------------lsV~aIegsq 186 (476)
T KOG2651|consen 141 LSELVSSISDFTGIDQVVDVGAGQGHLSRFLSLGYG--------------LSVKAIEGSQ 186 (476)
T ss_pred HHHHHHHHHhhcCCCeeEEcCCCchHHHHHHhhccC--------------ceEEEeccch
Confidence 344444444455668999999999999999986654 6899999875
No 277
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=90.51 E-value=2.6 Score=38.35 Aligned_cols=113 Identities=15% Similarity=0.163 Sum_probs=59.4
Q ss_pred ccCCCeEEEEcCCC-ChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----CCCCceEeecCCCCh-hhHHHH
Q 025715 39 FEGVKRVVDLCAAP-GSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----PIEGVIQVQGDITNA-RTAEVV 111 (249)
Q Consensus 39 ~~~g~~vLDLG~gp-G~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----~~~~v~~~~gDi~~~-~~~~~i 111 (249)
+++|.+||..|+|+ |..+..+++..+ ...|+++|.++.+ ...++..+. ..+. ...+.+
T Consensus 182 ~~~g~~VlV~g~G~vG~~~~~la~~~g-------------~~~vi~~~~~~~~~~~~~~~~~~~vi~--~~~~~~~~~~l 246 (386)
T cd08283 182 VKPGDTVAVWGCGPVGLFAARSAKLLG-------------AERVIAIDRVPERLEMARSHLGAETIN--FEEVDDVVEAL 246 (386)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-------------CCEEEEEcCCHHHHHHHHHcCCcEEEc--CCcchHHHHHH
Confidence 46789999998876 666666777664 2368999887632 111333332 2222 123334
Q ss_pred HHhcCCCcccEEEeCCCCCCCC-C-CCc-CHH-HHHHHHHHHHHHHHHhccCCCEEEEE
Q 025715 112 IRHFDGCKADLVVCDGAPDVTG-L-HDM-DEF-VQSQLILAGLTVVTHVLKEGGKFIAK 166 (249)
Q Consensus 112 ~~~~~~~~~DlVlsD~~~~~~g-~-~~~-~~~-~~~~l~~~~l~~a~~~Lk~gG~lv~k 166 (249)
.+...+..+|+|+--....... . .+. ++. ....--...+..+.++|+++|++++-
T Consensus 247 ~~~~~~~~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~ 305 (386)
T cd08283 247 RELTGGRGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSII 305 (386)
T ss_pred HHHcCCCCCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEE
Confidence 4434445799998632110000 0 000 000 00000013567778899999999874
No 278
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=90.45 E-value=7.3 Score=32.54 Aligned_cols=105 Identities=16% Similarity=0.279 Sum_probs=68.0
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC------CCCCceEeecCCCChhhHHHHHH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PIEGVIQVQGDITNARTAEVVIR 113 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~------~~~~v~~~~gDi~~~~~~~~i~~ 113 (249)
+| ..|++.|..-||-....+..+.. .+...+|+++|++--. ..+++.+++|+-+++....++..
T Consensus 69 ~P-~lvIE~Gs~~GGSal~fA~~m~s---------~Gq~~kvl~vdIdi~~~~p~a~e~p~i~f~egss~dpai~eqi~~ 138 (237)
T COG3510 69 QP-SLVIEFGSRHGGSALFFANMMIS---------IGQPFKVLGVDIDIKPLDPAAREVPDILFIEGSSTDPAIAEQIRR 138 (237)
T ss_pred CC-ceeEeeccccCchhhhhhHhHHh---------cCCCceEEEEecccCcCChhhhcCCCeEEEeCCCCCHHHHHHHHH
Confidence 45 69999999999977776665431 1144688888887422 26899999999999988877765
Q ss_pred hcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEE
Q 025715 114 HFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (249)
Q Consensus 114 ~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k 166 (249)
.-.+.+-=+|+.|. +|. .+-..+.++.-..+|.-|-.+|+.
T Consensus 139 ~~~~y~kIfvilDs----------dHs--~~hvLAel~~~~pllsaG~Y~vVe 179 (237)
T COG3510 139 LKNEYPKIFVILDS----------DHS--MEHVLAELKLLAPLLSAGDYLVVE 179 (237)
T ss_pred HhcCCCcEEEEecC----------Cch--HHHHHHHHHHhhhHhhcCceEEEe
Confidence 43333322334432 111 111235666667788888888764
No 279
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.39 E-value=0.25 Score=39.64 Aligned_cols=47 Identities=15% Similarity=0.240 Sum_probs=33.1
Q ss_pred hcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEec
Q 025715 114 HFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFR 169 (249)
Q Consensus 114 ~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~ 169 (249)
.|.++++|+|++-- ...+ ...+....+++++.++|||||.|-|.+-.
T Consensus 42 ~F~dns~d~iyaeH--------vlEH-lt~~Eg~~alkechr~Lrp~G~LriAvPd 88 (185)
T COG4627 42 MFEDNSVDAIYAEH--------VLEH-LTYDEGTSALKECHRFLRPGGKLRIAVPD 88 (185)
T ss_pred cCCCcchHHHHHHH--------HHHH-HhHHHHHHHHHHHHHHhCcCcEEEEEcCC
Confidence 46778899988631 1122 22334467899999999999999997754
No 280
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=90.30 E-value=1.1 Score=39.38 Aligned_cols=98 Identities=16% Similarity=0.121 Sum_probs=63.0
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-C---CCCc-eEeecCCCChhhHHHHHHh
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-P---IEGV-IQVQGDITNARTAEVVIRH 114 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-~---~~~v-~~~~gDi~~~~~~~~i~~~ 114 (249)
..|..++|.|||-|-.. .. ++.+.+++.|+.... . -.|. ....+|+.+.+
T Consensus 44 ~~gsv~~d~gCGngky~-------~~----------~p~~~~ig~D~c~~l~~~ak~~~~~~~~~ad~l~~p-------- 98 (293)
T KOG1331|consen 44 PTGSVGLDVGCGNGKYL-------GV----------NPLCLIIGCDLCTGLLGGAKRSGGDNVCRADALKLP-------- 98 (293)
T ss_pred CCcceeeecccCCcccC-------cC----------CCcceeeecchhhhhccccccCCCceeehhhhhcCC--------
Confidence 45889999999999622 21 135789999998632 1 1222 34456666543
Q ss_pred cCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecC
Q 025715 115 FDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRG 170 (249)
Q Consensus 115 ~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~ 170 (249)
+...+||..++-..... ......-..+++...+.|+|||...+-++..
T Consensus 99 ~~~~s~d~~lsiavihh--------lsT~~RR~~~l~e~~r~lrpgg~~lvyvwa~ 146 (293)
T KOG1331|consen 99 FREESFDAALSIAVIHH--------LSTRERRERALEELLRVLRPGGNALVYVWAL 146 (293)
T ss_pred CCCCccccchhhhhhhh--------hhhHHHHHHHHHHHHHHhcCCCceEEEEehh
Confidence 35678999887543221 1111223567889999999999988877743
No 281
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=90.20 E-value=6.6 Score=33.29 Aligned_cols=77 Identities=16% Similarity=0.059 Sum_probs=52.0
Q ss_pred CCCeEEEEcCCC-ChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----CC--CCceEeecCCCChhhHHHHH
Q 025715 41 GVKRVVDLCAAP-GSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----PI--EGVIQVQGDITNARTAEVVI 112 (249)
Q Consensus 41 ~g~~vLDLG~gp-G~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----~~--~~v~~~~gDi~~~~~~~~i~ 112 (249)
.++++|=.|++. ++....+++.+.. .+.+|+.++.+... .+ ..+.+++.|+++.+..+.+.
T Consensus 6 ~~k~~lItGas~~~gIG~a~a~~la~-----------~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~ 74 (252)
T PRK06079 6 SGKKIVVMGVANKRSIAWGCAQAIKD-----------QGATVIYTYQNDRMKKSLQKLVDEEDLLVECDVASDESIERAF 74 (252)
T ss_pred CCCEEEEeCCCCCCchHHHHHHHHHH-----------CCCEEEEecCchHHHHHHHhhccCceeEEeCCCCCHHHHHHHH
Confidence 357899999886 7888888887742 34678877765310 11 24667889999987665544
Q ss_pred HhcC--CCcccEEEeCCC
Q 025715 113 RHFD--GCKADLVVCDGA 128 (249)
Q Consensus 113 ~~~~--~~~~DlVlsD~~ 128 (249)
+.+. -+++|+++.+..
T Consensus 75 ~~~~~~~g~iD~lv~nAg 92 (252)
T PRK06079 75 ATIKERVGKIDGIVHAIA 92 (252)
T ss_pred HHHHHHhCCCCEEEEccc
Confidence 4321 157999999864
No 282
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=90.16 E-value=2.4 Score=38.31 Aligned_cols=98 Identities=19% Similarity=0.219 Sum_probs=59.4
Q ss_pred CCCeEEEEcCCCChHHHH-HHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC-----CCCceEeecCCCChhhHHHHHHh
Q 025715 41 GVKRVVDLCAAPGSWSQV-LSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP-----IEGVIQVQGDITNARTAEVVIRH 114 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~-l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~-----~~~v~~~~gDi~~~~~~~~i~~~ 114 (249)
++.+|+=+||||=|.... +++..+ ..+|+++|+++.+. .-+...+...-.+ .....+...
T Consensus 168 ~~~~V~V~GaGpIGLla~~~a~~~G-------------a~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~-~~~~~~~~~ 233 (350)
T COG1063 168 PGGTVVVVGAGPIGLLAIALAKLLG-------------ASVVIVVDRSPERLELAKEAGGADVVVNPSED-DAGAEILEL 233 (350)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcC-------------CceEEEeCCCHHHHHHHHHhCCCeEeecCccc-cHHHHHHHH
Confidence 445999999999777654 455544 47999999988541 1122222111111 222223332
Q ss_pred cCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEec
Q 025715 115 FDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFR 169 (249)
Q Consensus 115 ~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~ 169 (249)
-.+..+|+|+= ++|. ..++..+..+++|||++++.-..
T Consensus 234 t~g~g~D~vie-----~~G~------------~~~~~~ai~~~r~gG~v~~vGv~ 271 (350)
T COG1063 234 TGGRGADVVIE-----AVGS------------PPALDQALEALRPGGTVVVVGVY 271 (350)
T ss_pred hCCCCCCEEEE-----CCCC------------HHHHHHHHHHhcCCCEEEEEecc
Confidence 23347999983 4552 13678899999999999975443
No 283
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=89.92 E-value=1.5 Score=35.41 Aligned_cols=110 Identities=15% Similarity=0.157 Sum_probs=57.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCCCCCceEeecCCCChhhHHHHHHhcCCCccc
Q 025715 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKAD 121 (249)
Q Consensus 42 g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~~~~v~~~~gDi~~~~~~~~i~~~~~~~~~D 121 (249)
|++++=+|+. =-|.++++-..+ ..+|+.|+-++...-...+..-..+.-.+..+.. ... .++||
T Consensus 2 ~~~g~V~GS~-~PwvEv~aL~~G-------------A~~iltveyn~L~i~~~~~dr~ssi~p~df~~~~-~~y-~~~fD 65 (177)
T PF03269_consen 2 GKSGLVVGSM-QPWVEVMALQHG-------------AAKILTVEYNKLEIQEEFRDRLSSILPVDFAKNW-QKY-AGSFD 65 (177)
T ss_pred CceEEEEecC-CchhhHHHHHcC-------------CceEEEEeecccccCcccccccccccHHHHHHHH-HHh-hccch
Confidence 4566777766 457777665544 4688889988754211110000111111111111 112 36899
Q ss_pred EEEeCCCCCCCCCCCc-CHHHHHHHHHHHHHHHHHhccCCCEEEEEEe
Q 025715 122 LVVCDGAPDVTGLHDM-DEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (249)
Q Consensus 122 lVlsD~~~~~~g~~~~-~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~ 168 (249)
.+.|-.+....|..-. |+.....- ..++..+.++|||||.|.+.+-
T Consensus 66 ~~as~~siEh~GLGRYGDPidp~Gd-l~~m~~i~~vLK~GG~L~l~vP 112 (177)
T PF03269_consen 66 FAASFSSIEHFGLGRYGDPIDPIGD-LRAMAKIKCVLKPGGLLFLGVP 112 (177)
T ss_pred hhheechhccccccccCCCCCcccc-HHHHHHHHHhhccCCeEEEEee
Confidence 9988766554443211 11000000 2456677889999999998765
No 284
>PRK06179 short chain dehydrogenase; Provisional
Probab=89.58 E-value=7.1 Score=33.19 Aligned_cols=76 Identities=17% Similarity=0.207 Sum_probs=52.7
Q ss_pred CCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC--CCCCceEeecCCCChhhHHHHHHhc--CC
Q 025715 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--PIEGVIQVQGDITNARTAEVVIRHF--DG 117 (249)
Q Consensus 42 g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~--~~~~v~~~~gDi~~~~~~~~i~~~~--~~ 117 (249)
+.++|=.| |+|+....+++++.. .+.+|++++.++.. ...+++++.+|+++.+..+.+.+.. ..
T Consensus 4 ~~~vlVtG-asg~iG~~~a~~l~~-----------~g~~V~~~~r~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~ 71 (270)
T PRK06179 4 SKVALVTG-ASSGIGRATAEKLAR-----------AGYRVFGTSRNPARAAPIPGVELLELDVTDDASVQAAVDEVIARA 71 (270)
T ss_pred CCEEEEec-CCCHHHHHHHHHHHH-----------CCCEEEEEeCChhhccccCCCeeEEeecCCHHHHHHHHHHHHHhC
Confidence 35677777 568888888877642 24688888887533 2457888999999987655544332 12
Q ss_pred CcccEEEeCCCC
Q 025715 118 CKADLVVCDGAP 129 (249)
Q Consensus 118 ~~~DlVlsD~~~ 129 (249)
+.+|+|+.+...
T Consensus 72 g~~d~li~~ag~ 83 (270)
T PRK06179 72 GRIDVLVNNAGV 83 (270)
T ss_pred CCCCEEEECCCC
Confidence 469999998754
No 285
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=89.50 E-value=5.3 Score=33.93 Aligned_cols=127 Identities=21% Similarity=0.231 Sum_probs=62.3
Q ss_pred cchhhhhhHHhhhhhcCcc--cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC--------
Q 025715 21 WRARSAFKLLQIDEEFNIF--EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-------- 90 (249)
Q Consensus 21 ~~~ra~~KL~ei~~~~~~~--~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-------- 90 (249)
|.-|-+..+.| ..+.++ +.+-++-|=|||.|.....+.-.-+. .-..|+|-|+++..
T Consensus 31 FPVRLAsEi~q--R~l~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~-----------~l~~v~aSDId~~aL~lA~kNL 97 (246)
T PF11599_consen 31 FPVRLASEIFQ--RALHYLEGKGPYTLYDPCCGSGYLLTVLGLLHRR-----------RLRRVYASDIDEDALELARKNL 97 (246)
T ss_dssp --HHHHHHHHH--HHHCTSSS-S-EEEEETT-TTSHHHHHHHHHTGG-----------GEEEEEEEES-HHHHHHHHHHH
T ss_pred ccHHHHHHHHH--HHHHhhcCCCCeeeeccCCCccHHHHHHHHhhhH-----------HHHhHhcccCCHHHHHHHHHhh
Confidence 44444433333 333444 33468999999999998876543221 12579999998621
Q ss_pred ------------------------C---------------------CCCceEeecCCCChhhHHHHHHhcCCCcccEEEe
Q 025715 91 ------------------------P---------------------IEGVIQVQGDITNARTAEVVIRHFDGCKADLVVC 125 (249)
Q Consensus 91 ------------------------~---------------------~~~v~~~~gDi~~~~~~~~i~~~~~~~~~DlVls 125 (249)
+ ..-....+.|++++....... .....|+|+.
T Consensus 98 ~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~---~~~~~diViT 174 (246)
T PF11599_consen 98 SLLTPEGLEARREELRELYEQYGKPSHAEALESADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLD---AGFTPDIVIT 174 (246)
T ss_dssp HCCSHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHH---TT---SEEEE
T ss_pred hhccHhHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhcCCCCchhheeecccCCchhhhhc---cCCCCCEEEe
Confidence 0 001235678999987655543 2345899999
Q ss_pred CCCC----CCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecC
Q 025715 126 DGAP----DVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRG 170 (249)
Q Consensus 126 D~~~----~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~ 170 (249)
|.+- .|.|. .+..=....|.....+| |+..+|+.+-++
T Consensus 175 DlPYG~~t~W~g~------~~~~p~~~ml~~l~~vL-p~~sVV~v~~k~ 216 (246)
T PF11599_consen 175 DLPYGEMTSWQGE------GSGGPVAQMLNSLAPVL-PERSVVAVSDKG 216 (246)
T ss_dssp E--CCCSSSTTS---------HHHHHHHHHHHHCCS--TT-EEEEEESS
T ss_pred cCCCcccccccCC------CCCCcHHHHHHHHHhhC-CCCcEEEEecCC
Confidence 9742 23331 11122334566677788 666666544333
No 286
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=89.47 E-value=0.44 Score=43.12 Aligned_cols=33 Identities=18% Similarity=0.275 Sum_probs=21.2
Q ss_pred hhhhhcCcccCCCeEEEEcCCCChHHHHHHHHhc
Q 025715 31 QIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLY 64 (249)
Q Consensus 31 ei~~~~~~~~~g~~vLDLG~gpG~~s~~l~~~~~ 64 (249)
++....+-+.| .++||+|+|||.-.-++....+
T Consensus 104 ~L~~~~~dfap-qsiLDvG~GPgtgl~A~n~i~P 136 (484)
T COG5459 104 ELQKRVPDFAP-QSILDVGAGPGTGLWALNDIWP 136 (484)
T ss_pred HHHHhCCCcCc-chhhccCCCCchhhhhhcccCC
Confidence 44444444444 5799999999986655555443
No 287
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=88.97 E-value=9.9 Score=32.32 Aligned_cols=78 Identities=15% Similarity=-0.006 Sum_probs=52.4
Q ss_pred CCCeEEEEcCC-CChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCC-C-------CC-CCceEeecCCCChhhHHH
Q 025715 41 GVKRVVDLCAA-PGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM-A-------PI-EGVIQVQGDITNARTAEV 110 (249)
Q Consensus 41 ~g~~vLDLG~g-pG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~-~-------~~-~~v~~~~gDi~~~~~~~~ 110 (249)
.++++|=.|++ .+++...+++.+.. ...+|+..+++.. . .+ ..+.++..|+++.+..+.
T Consensus 6 ~~k~~lItGa~~s~GIG~a~a~~la~-----------~G~~v~l~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~ 74 (256)
T PRK07889 6 EGKRILVTGVITDSSIAFHVARVAQE-----------QGAEVVLTGFGRALRLTERIAKRLPEPAPVLELDVTNEEHLAS 74 (256)
T ss_pred cCCEEEEeCCCCcchHHHHHHHHHHH-----------CCCEEEEecCccchhHHHHHHHhcCCCCcEEeCCCCCHHHHHH
Confidence 35789999986 68898888877642 2457887776531 1 11 235678899999876655
Q ss_pred HHHhcC--CCcccEEEeCCCC
Q 025715 111 VIRHFD--GCKADLVVCDGAP 129 (249)
Q Consensus 111 i~~~~~--~~~~DlVlsD~~~ 129 (249)
+.+... .+.+|+++.+...
T Consensus 75 ~~~~~~~~~g~iD~li~nAG~ 95 (256)
T PRK07889 75 LADRVREHVDGLDGVVHSIGF 95 (256)
T ss_pred HHHHHHHHcCCCcEEEEcccc
Confidence 544321 2579999998753
No 288
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=88.88 E-value=2.5 Score=38.00 Aligned_cols=96 Identities=16% Similarity=0.123 Sum_probs=53.6
Q ss_pred ccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCC-eEEEecCCCCCC--C--CCce-EeecCCCChhhHHHHH
Q 025715 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLP-LIVAIDLQPMAP--I--EGVI-QVQGDITNARTAEVVI 112 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~-~vvavDi~~~~~--~--~~v~-~~~gDi~~~~~~~~i~ 112 (249)
+++|.+||=.|+ |+..+++.+.... ... +|+++|.++.+. . -+.. .+ |..+.+..+.+.
T Consensus 174 ~~~g~~VlV~G~--g~vG~~a~~~ak~-----------~G~~~Vi~~~~~~~~~~~~~~~Ga~~~i--~~~~~~~~~~i~ 238 (358)
T TIGR03451 174 VKRGDSVAVIGC--GGVGDAAIAGAAL-----------AGASKIIAVDIDDRKLEWAREFGATHTV--NSSGTDPVEAIR 238 (358)
T ss_pred CCCCCEEEEECC--CHHHHHHHHHHHH-----------cCCCeEEEEcCCHHHHHHHHHcCCceEE--cCCCcCHHHHHH
Confidence 467899998875 6666654432210 123 589998876431 0 1221 12 223333334444
Q ss_pred HhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEE
Q 025715 113 RHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (249)
Q Consensus 113 ~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k 166 (249)
+...+..+|+|+- +.|. . ..+..+.+.|++||++++.
T Consensus 239 ~~~~~~g~d~vid-----~~g~---~---------~~~~~~~~~~~~~G~iv~~ 275 (358)
T TIGR03451 239 ALTGGFGADVVID-----AVGR---P---------ETYKQAFYARDLAGTVVLV 275 (358)
T ss_pred HHhCCCCCCEEEE-----CCCC---H---------HHHHHHHHHhccCCEEEEE
Confidence 4334456999883 2332 1 2355677899999999874
No 289
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=88.63 E-value=0.71 Score=38.16 Aligned_cols=49 Identities=20% Similarity=0.170 Sum_probs=30.0
Q ss_pred ccEEEeCCCCCCCCC-------C-CcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEe
Q 025715 120 ADLVVCDGAPDVTGL-------H-DMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (249)
Q Consensus 120 ~DlVlsD~~~~~~g~-------~-~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~ 168 (249)
+|+|+.|++....-. . +.+...-...+...+.++.++|||||.+++-+-
T Consensus 1 VdliitDPPY~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~rvLk~~g~~~i~~~ 57 (231)
T PF01555_consen 1 VDLIITDPPYNIGKDYNNYFDYGDNKNHEEYLEWMEEWLKECYRVLKPGGSIFIFID 57 (231)
T ss_dssp EEEEEE---TSSSCS-----CSCHCCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE-
T ss_pred CCEEEECCCCCCCCCcchhhhccCCCCHHHHHHHHHHHHHHHHhhcCCCeeEEEEec
Confidence 589999986443221 0 111223345567789999999999999998554
No 290
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=88.31 E-value=1.2 Score=33.46 Aligned_cols=86 Identities=20% Similarity=0.217 Sum_probs=54.2
Q ss_pred ChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC--C--CCceEeecCCCChhhHHHHHHhcCCCcccEEEeCCC
Q 025715 53 GSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP--I--EGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGA 128 (249)
Q Consensus 53 G~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~--~--~~v~~~~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~ 128 (249)
|.++..+++.++ .+|+++|.++.+. . -|...+ -|..+.+..+++.+...+..+|+|+-
T Consensus 3 G~~a~q~ak~~G--------------~~vi~~~~~~~k~~~~~~~Ga~~~-~~~~~~~~~~~i~~~~~~~~~d~vid--- 64 (130)
T PF00107_consen 3 GLMAIQLAKAMG--------------AKVIATDRSEEKLELAKELGADHV-IDYSDDDFVEQIRELTGGRGVDVVID--- 64 (130)
T ss_dssp HHHHHHHHHHTT--------------SEEEEEESSHHHHHHHHHTTESEE-EETTTSSHHHHHHHHTTTSSEEEEEE---
T ss_pred HHHHHHHHHHcC--------------CEEEEEECCHHHHHHHHhhccccc-ccccccccccccccccccccceEEEE---
Confidence 556666777664 7999999987431 1 122111 23333335566666656568999984
Q ss_pred CCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecC
Q 025715 129 PDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRG 170 (249)
Q Consensus 129 ~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~ 170 (249)
+.|. ...+..+..+|+++|++++--..+
T Consensus 65 --~~g~------------~~~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 65 --CVGS------------GDTLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp --SSSS------------HHHHHHHHHHEEEEEEEEEESSTS
T ss_pred --ecCc------------HHHHHHHHHHhccCCEEEEEEccC
Confidence 3331 135778899999999999854433
No 291
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=88.25 E-value=1.8 Score=38.09 Aligned_cols=122 Identities=15% Similarity=0.128 Sum_probs=60.8
Q ss_pred CeEEEEcCCCChHHHHHHH-HhcCCCCCCCCCCCCCCCeEEEecCCCCCC-------------CCCceEeecCCCChhhH
Q 025715 43 KRVVDLCAAPGSWSQVLSR-KLYLPAKLSPDSREGDLPLIVAIDLQPMAP-------------IEGVIQVQGDITNARTA 108 (249)
Q Consensus 43 ~~vLDLG~gpG~~s~~l~~-~~~~~~~~~~~~~~~~~~~vvavDi~~~~~-------------~~~v~~~~gDi~~~~~~ 108 (249)
.+|+-+|+||=-+|..+.. +.+ .+..|+++|+++.+. -.+++++++|+.+...
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~------------~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~- 188 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHG------------PGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTY- 188 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HT------------T--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-G-
T ss_pred ceEEEEcCCCcchHHHHHHHHhC------------CCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhcccc-
Confidence 5999999999999987554 332 347899999998430 1467899999876431
Q ss_pred HHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCCC---HHHHHHHHhcCCC
Q 025715 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKD---TSLLYCQLKLFFP 185 (249)
Q Consensus 109 ~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~---~~~l~~~l~~~f~ 185 (249)
.-..||+|+--.- +.... .+. ..++....+..+||..+++....+-+ +..+-..-.+-|+
T Consensus 189 -------dl~~~DvV~lAal--Vg~~~-e~K-------~~Il~~l~~~m~~ga~l~~Rsa~GlR~~LYp~vd~~~l~gf~ 251 (276)
T PF03059_consen 189 -------DLKEYDVVFLAAL--VGMDA-EPK-------EEILEHLAKHMAPGARLVVRSAHGLRSFLYPVVDPEDLRGFE 251 (276)
T ss_dssp -------G----SEEEE-TT---S-----SH-------HHHHHHHHHHS-TTSEEEEEE--GGGGGSS----TGGGTTEE
T ss_pred -------ccccCCEEEEhhh--ccccc-chH-------HHHHHHHHhhCCCCcEEEEecchhhHHHcCCCCChHHCCCeE
Confidence 1247999976431 11110 111 24677778899999999987543321 1111100012477
Q ss_pred eeEEecCCC
Q 025715 186 VVTFAKPKS 194 (249)
Q Consensus 186 ~v~~~kP~~ 194 (249)
....++|..
T Consensus 252 ~~~~~hP~~ 260 (276)
T PF03059_consen 252 VLAVVHPTD 260 (276)
T ss_dssp EEEEE---T
T ss_pred EEEEECCCC
Confidence 777788864
No 292
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=87.54 E-value=1.6 Score=38.02 Aligned_cols=70 Identities=17% Similarity=0.107 Sum_probs=52.1
Q ss_pred HHhhhhhcCcccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC--------C---CCceE
Q 025715 29 LLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP--------I---EGVIQ 97 (249)
Q Consensus 29 L~ei~~~~~~~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~--------~---~~v~~ 97 (249)
|+...+..+++.+...++++|||.|..|.++++.+... ..+...++.||....+. . +.++-
T Consensus 6 li~~l~~~~ll~~~~~~vEfGaGrg~LS~~v~~~~~~~--------~~~~~~~~lIDR~~~R~K~D~~~~~~~~~~~~~R 77 (259)
T PF05206_consen 6 LIGNLEQRGLLNPDSCFVEFGAGRGELSRWVAQALQED--------KPSNSRFVLIDRASNRHKADNKIRKDESEPKFER 77 (259)
T ss_pred HHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHhhhc--------ccCCccEEEEecCcccccchhhhhccCCCCceEE
Confidence 67778888888888999999999999999999877421 01246888999965331 1 23566
Q ss_pred eecCCCChh
Q 025715 98 VQGDITNAR 106 (249)
Q Consensus 98 ~~gDi~~~~ 106 (249)
+..||.+..
T Consensus 78 ~riDI~dl~ 86 (259)
T PF05206_consen 78 LRIDIKDLD 86 (259)
T ss_pred EEEEeeccc
Confidence 778888865
No 293
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=87.00 E-value=18 Score=30.76 Aligned_cols=77 Identities=14% Similarity=-0.025 Sum_probs=51.8
Q ss_pred CCCeEEEEcCCC-ChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCC--C-------CC--CCceEeecCCCChhhH
Q 025715 41 GVKRVVDLCAAP-GSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM--A-------PI--EGVIQVQGDITNARTA 108 (249)
Q Consensus 41 ~g~~vLDLG~gp-G~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~--~-------~~--~~v~~~~gDi~~~~~~ 108 (249)
.++++|=.|+++ ++....+++.+.. ...+|+.++.+.- . .+ .++..++.|+++.+..
T Consensus 6 ~~k~~lItGa~~s~GIG~aia~~la~-----------~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v 74 (257)
T PRK08594 6 EGKTYVVMGVANKRSIAWGIARSLHN-----------AGAKLVFTYAGERLEKEVRELADTLEGQESLLLPCDVTSDEEI 74 (257)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHH-----------CCCEEEEecCcccchHHHHHHHHHcCCCceEEEecCCCCHHHH
Confidence 467899999984 8899988887752 2457777765421 0 11 2466788999998766
Q ss_pred HHHHHhcC--CCcccEEEeCCC
Q 025715 109 EVVIRHFD--GCKADLVVCDGA 128 (249)
Q Consensus 109 ~~i~~~~~--~~~~DlVlsD~~ 128 (249)
+.+.+.+. -+++|+++.+..
T Consensus 75 ~~~~~~~~~~~g~ld~lv~nag 96 (257)
T PRK08594 75 TACFETIKEEVGVIHGVAHCIA 96 (257)
T ss_pred HHHHHHHHHhCCCccEEEECcc
Confidence 55544332 157999998864
No 294
>PRK06196 oxidoreductase; Provisional
Probab=86.86 E-value=8.1 Score=33.97 Aligned_cols=77 Identities=16% Similarity=0.173 Sum_probs=52.7
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC------CCCCceEeecCCCChhhHHHHHHh
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PIEGVIQVQGDITNARTAEVVIRH 114 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~------~~~~v~~~~gDi~~~~~~~~i~~~ 114 (249)
.+.+||=.| |+|+...++++.+.. .+..|+.++.++.. .+.++.++.+|+++.+..+.+.+.
T Consensus 25 ~~k~vlITG-asggIG~~~a~~L~~-----------~G~~Vv~~~R~~~~~~~~~~~l~~v~~~~~Dl~d~~~v~~~~~~ 92 (315)
T PRK06196 25 SGKTAIVTG-GYSGLGLETTRALAQ-----------AGAHVIVPARRPDVAREALAGIDGVEVVMLDLADLESVRAFAER 92 (315)
T ss_pred CCCEEEEeC-CCchHHHHHHHHHHH-----------CCCEEEEEeCCHHHHHHHHHHhhhCeEEEccCCCHHHHHHHHHH
Confidence 356888888 457888888776642 23588888877532 134577889999998766555443
Q ss_pred cC--CCcccEEEeCCCC
Q 025715 115 FD--GCKADLVVCDGAP 129 (249)
Q Consensus 115 ~~--~~~~DlVlsD~~~ 129 (249)
+. .+.+|+|+.+...
T Consensus 93 ~~~~~~~iD~li~nAg~ 109 (315)
T PRK06196 93 FLDSGRRIDILINNAGV 109 (315)
T ss_pred HHhcCCCCCEEEECCCC
Confidence 32 2579999998753
No 295
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=86.61 E-value=14 Score=32.72 Aligned_cols=73 Identities=15% Similarity=0.159 Sum_probs=47.8
Q ss_pred CCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC------CC--CCceEeecCCCChhhHHHHHH
Q 025715 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PI--EGVIQVQGDITNARTAEVVIR 113 (249)
Q Consensus 42 g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~------~~--~~v~~~~gDi~~~~~~~~i~~ 113 (249)
|++||=.|+ +|+...++++.+-.. +...+|+++|.+... .. .++.++.+|+++.+.+....
T Consensus 4 ~k~vLVTGa-tG~IG~~l~~~L~~~---------g~~~~V~~~~r~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~~- 72 (324)
T TIGR03589 4 NKSILITGG-TGSFGKAFISRLLEN---------YNPKKIIIYSRDELKQWEMQQKFPAPCLRFFIGDVRDKERLTRAL- 72 (324)
T ss_pred CCEEEEeCC-CCHHHHHHHHHHHHh---------CCCcEEEEEcCChhHHHHHHHHhCCCcEEEEEccCCCHHHHHHHH-
Confidence 567887775 688888888766410 012478888766432 11 35778899999987554433
Q ss_pred hcCCCcccEEEeCCCC
Q 025715 114 HFDGCKADLVVCDGAP 129 (249)
Q Consensus 114 ~~~~~~~DlVlsD~~~ 129 (249)
. .+|.|+...+.
T Consensus 73 --~--~iD~Vih~Ag~ 84 (324)
T TIGR03589 73 --R--GVDYVVHAAAL 84 (324)
T ss_pred --h--cCCEEEECccc
Confidence 2 48999987653
No 296
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=86.43 E-value=6.3 Score=37.19 Aligned_cols=106 Identities=20% Similarity=0.226 Sum_probs=69.4
Q ss_pred cCCC-eEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC----------CCCCceEeecCCCChhhH
Q 025715 40 EGVK-RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------PIEGVIQVQGDITNARTA 108 (249)
Q Consensus 40 ~~g~-~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~----------~~~~v~~~~gDi~~~~~~ 108 (249)
++-. ++|-+|||-=-++..+-+.. --.|+-+|+++.. ..+...+...|++...
T Consensus 46 ~p~~~~~l~lGCGNS~l~e~ly~~G--------------~~dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~-- 109 (482)
T KOG2352|consen 46 SPSDFKILQLGCGNSELSEHLYKNG--------------FEDITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLV-- 109 (482)
T ss_pred chhhceeEeecCCCCHHHHHHHhcC--------------CCCceeccccHHHHHHHHhccccCCcceEEEEecchhcc--
Confidence 5555 99999999987776665432 2478899999842 1234567788887753
Q ss_pred HHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEe
Q 025715 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (249)
Q Consensus 109 ~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~ 168 (249)
|.+++||+|+.=|..+..-......+.. .....-+....++|++||+++.-++
T Consensus 110 ------fedESFdiVIdkGtlDal~~de~a~~~~-~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 110 ------FEDESFDIVIDKGTLDALFEDEDALLNT-AHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred ------CCCcceeEEEecCccccccCCchhhhhh-HHhhHHHhhHHHHhccCCEEEEEEe
Confidence 5778999999877654321111111111 2234456788899999999886555
No 297
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=86.25 E-value=4.3 Score=31.33 Aligned_cols=94 Identities=22% Similarity=0.261 Sum_probs=48.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCCCCCceEeecCCCChhhHHHHHHhcCCCccc
Q 025715 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKAD 121 (249)
Q Consensus 42 g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~~~~v~~~~gDi~~~~~~~~i~~~~~~~~~D 121 (249)
..+++++|-|-=--....++..+ ..|+++|+.+.....|+.++.-|++++... + . ...|
T Consensus 14 ~~kiVEVGiG~~~~vA~~L~~~G--------------~dV~~tDi~~~~a~~g~~~v~DDif~P~l~--i---Y--~~a~ 72 (127)
T PF03686_consen 14 YGKIVEVGIGFNPEVAKKLKERG--------------FDVIATDINPRKAPEGVNFVVDDIFNPNLE--I---Y--EGAD 72 (127)
T ss_dssp SSEEEEET-TT--HHHHHHHHHS---------------EEEEE-SS-S----STTEE---SSS--HH--H---H--TTEE
T ss_pred CCcEEEECcCCCHHHHHHHHHcC--------------CcEEEEECcccccccCcceeeecccCCCHH--H---h--cCCc
Confidence 34999999765443333333333 699999999984447899999999997631 1 1 3699
Q ss_pred EEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCCC
Q 025715 122 LVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKD 172 (249)
Q Consensus 122 lVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~ 172 (249)
+|.|-=+|. +|+..++++|.++ |..|+++.+..+.
T Consensus 73 lIYSiRPP~-------------El~~~il~lA~~v---~adlii~pL~~e~ 107 (127)
T PF03686_consen 73 LIYSIRPPP-------------ELQPPILELAKKV---GADLIIRPLGGES 107 (127)
T ss_dssp EEEEES--T-------------TSHHHHHHHHHHH---T-EEEEE-BTTB-
T ss_pred EEEEeCCCh-------------HHhHHHHHHHHHh---CCCEEEECCCCCC
Confidence 999853221 1233455555543 7778887776554
No 298
>PRK05993 short chain dehydrogenase; Provisional
Probab=85.65 E-value=12 Score=32.09 Aligned_cols=76 Identities=16% Similarity=0.129 Sum_probs=51.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC----CCCceEeecCCCChhhHHHHHHhc--
Q 025715 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----IEGVIQVQGDITNARTAEVVIRHF-- 115 (249)
Q Consensus 42 g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~----~~~v~~~~gDi~~~~~~~~i~~~~-- 115 (249)
+.+||=.|+ +|+....+++.+.. .+..|++++.++... -.++.++.+|+++.+..+.+.+..
T Consensus 4 ~k~vlItGa-sggiG~~la~~l~~-----------~G~~Vi~~~r~~~~~~~l~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 71 (277)
T PRK05993 4 KRSILITGC-SSGIGAYCARALQS-----------DGWRVFATCRKEEDVAALEAEGLEAFQLDYAEPESIAALVAQVLE 71 (277)
T ss_pred CCEEEEeCC-CcHHHHHHHHHHHH-----------CCCEEEEEECCHHHHHHHHHCCceEEEccCCCHHHHHHHHHHHHH
Confidence 457787775 68888888877642 246899888876321 135778899999987655544332
Q ss_pred -CCCcccEEEeCCCC
Q 025715 116 -DGCKADLVVCDGAP 129 (249)
Q Consensus 116 -~~~~~DlVlsD~~~ 129 (249)
..+.+|+|+.+...
T Consensus 72 ~~~g~id~li~~Ag~ 86 (277)
T PRK05993 72 LSGGRLDALFNNGAY 86 (277)
T ss_pred HcCCCccEEEECCCc
Confidence 12479999998643
No 299
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=85.59 E-value=22 Score=31.71 Aligned_cols=73 Identities=22% Similarity=0.144 Sum_probs=48.9
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC------C---CCceEeecCCCChhhHHHH
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP------I---EGVIQVQGDITNARTAEVV 111 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~------~---~~v~~~~gDi~~~~~~~~i 111 (249)
.+++||=.| |+|....++++.+-. ...+|+++|..+... + .++.++.+|+++.+....+
T Consensus 3 ~~k~ilItG-atG~IG~~l~~~L~~-----------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 70 (349)
T TIGR02622 3 QGKKVLVTG-HTGFKGSWLSLWLLE-----------LGAEVYGYSLDPPTSPNLFELLNLAKKIEDHFGDIRDAAKLRKA 70 (349)
T ss_pred CCCEEEEEC-CCChhHHHHHHHHHH-----------CCCEEEEEeCCCccchhHHHHHhhcCCceEEEccCCCHHHHHHH
Confidence 357888877 678888888776642 235899988765321 1 2466788999997755444
Q ss_pred HHhcCCCcccEEEeCCC
Q 025715 112 IRHFDGCKADLVVCDGA 128 (249)
Q Consensus 112 ~~~~~~~~~DlVlsD~~ 128 (249)
. ....+|.|+...+
T Consensus 71 ~---~~~~~d~vih~A~ 84 (349)
T TIGR02622 71 I---AEFKPEIVFHLAA 84 (349)
T ss_pred H---hhcCCCEEEECCc
Confidence 3 3335899987765
No 300
>PRK07806 short chain dehydrogenase; Provisional
Probab=85.44 E-value=6.6 Score=32.84 Aligned_cols=75 Identities=13% Similarity=0.016 Sum_probs=47.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC-------C----CCceEeecCCCChhhHHH
Q 025715 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP-------I----EGVIQVQGDITNARTAEV 110 (249)
Q Consensus 42 g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~-------~----~~v~~~~gDi~~~~~~~~ 110 (249)
+.++|=.|+ +|+....+++.+.. .+..|++++.+.... + .++.++.+|+++.+....
T Consensus 6 ~k~vlItGa-sggiG~~l~~~l~~-----------~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~ 73 (248)
T PRK07806 6 GKTALVTGS-SRGIGADTAKILAG-----------AGAHVVVNYRQKAPRANKVVAEIEAAGGRASAVGADLTDEESVAA 73 (248)
T ss_pred CcEEEEECC-CCcHHHHHHHHHHH-----------CCCEEEEEeCCchHhHHHHHHHHHhcCCceEEEEcCCCCHHHHHH
Confidence 467888884 56778877776531 235788877654211 1 245678899999876554
Q ss_pred HHHhcC--CCcccEEEeCCC
Q 025715 111 VIRHFD--GCKADLVVCDGA 128 (249)
Q Consensus 111 i~~~~~--~~~~DlVlsD~~ 128 (249)
+.+... -+.+|.|+.+..
T Consensus 74 ~~~~~~~~~~~~d~vi~~ag 93 (248)
T PRK07806 74 LMDTAREEFGGLDALVLNAS 93 (248)
T ss_pred HHHHHHHhCCCCcEEEECCC
Confidence 443221 136899888764
No 301
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=85.33 E-value=5.3 Score=33.98 Aligned_cols=95 Identities=18% Similarity=0.126 Sum_probs=58.8
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCC-----CC-----CCCCceEeecCCCChhhHH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQP-----MA-----PIEGVIQVQGDITNARTAE 109 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~-----~~-----~~~~v~~~~gDi~~~~~~~ 109 (249)
.+|.+||.+|-|=|.....+-++-+ .-++ -++-.| |+ .-.+|..+.|-..+.
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p-------------~~H~-IiE~hp~V~krmr~~gw~ek~nViil~g~WeDv---- 161 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPP-------------DEHW-IIEAHPDVLKRMRDWGWREKENVIILEGRWEDV---- 161 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCC-------------cceE-EEecCHHHHHHHHhcccccccceEEEecchHhh----
Confidence 5788999999999987777765432 2332 234443 11 124676666644331
Q ss_pred HHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEE
Q 025715 110 VVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIA 165 (249)
Q Consensus 110 ~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~ 165 (249)
...+.++.||=|+-|.-- ...+-++.....+.++|||+|.|-.
T Consensus 162 --l~~L~d~~FDGI~yDTy~-----------e~yEdl~~~hqh~~rLLkP~gv~Sy 204 (271)
T KOG1709|consen 162 --LNTLPDKHFDGIYYDTYS-----------ELYEDLRHFHQHVVRLLKPEGVFSY 204 (271)
T ss_pred --hccccccCcceeEeechh-----------hHHHHHHHHHHHHhhhcCCCceEEE
Confidence 224566789999987521 0122234456678999999998765
No 302
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=85.26 E-value=1.2 Score=39.92 Aligned_cols=68 Identities=19% Similarity=0.239 Sum_probs=44.0
Q ss_pred CeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC------CCCceEeecCCCChhhHHHHHHhcC
Q 025715 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP------IEGVIQVQGDITNARTAEVVIRHFD 116 (249)
Q Consensus 43 ~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~------~~~v~~~~gDi~~~~~~~~i~~~~~ 116 (249)
.+++||+||-||++..+... + --.+.++|+++.+. .+...++.+|+..... +.+.
T Consensus 4 ~~~idLFsG~GG~~lGf~~a-g-------------f~~~~a~Eid~~a~~ty~~n~~~~~~~~~di~~~~~-----~~~~ 64 (328)
T COG0270 4 MKVIDLFAGIGGLSLGFEEA-G-------------FEIVFANEIDPPAVATYKANFPHGDIILGDIKELDG-----EALR 64 (328)
T ss_pred ceEEeeccCCchHHHHHHhc-C-------------CeEEEEEecCHHHHHHHHHhCCCCceeechHhhcCh-----hhcc
Confidence 68999999999999766543 2 13677999998642 2323456677765432 1122
Q ss_pred CCcccEEEeCCCC
Q 025715 117 GCKADLVVCDGAP 129 (249)
Q Consensus 117 ~~~~DlVlsD~~~ 129 (249)
...+|+++.-++|
T Consensus 65 ~~~~DvligGpPC 77 (328)
T COG0270 65 KSDVDVLIGGPPC 77 (328)
T ss_pred ccCCCEEEeCCCC
Confidence 2279999976543
No 303
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=85.15 E-value=8.2 Score=33.74 Aligned_cols=95 Identities=13% Similarity=0.126 Sum_probs=51.5
Q ss_pred ccCCCeEEEEcCCC-ChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC----CCCceEeecCCCChhhHHHHHH
Q 025715 39 FEGVKRVVDLCAAP-GSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----IEGVIQVQGDITNARTAEVVIR 113 (249)
Q Consensus 39 ~~~g~~vLDLG~gp-G~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~----~~~v~~~~gDi~~~~~~~~i~~ 113 (249)
++++.+||..|+|+ |..+..+++..+ ..|++++.++... ..++..+..+ .+......+ .
T Consensus 163 ~~~~~~vli~g~g~vG~~~~~la~~~G--------------~~V~~~~~s~~~~~~~~~~g~~~~~~~-~~~~~~~~~-~ 226 (338)
T cd08254 163 VKPGETVLVIGLGGLGLNAVQIAKAMG--------------AAVIAVDIKEEKLELAKELGADEVLNS-LDDSPKDKK-A 226 (338)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcC--------------CEEEEEcCCHHHHHHHHHhCCCEEEcC-CCcCHHHHH-H
Confidence 56788999976432 333334455543 5688888765321 0122222111 111111222 2
Q ss_pred hcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEE
Q 025715 114 HFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (249)
Q Consensus 114 ~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k 166 (249)
...+..+|+|+... |. . ..+..+.+.|+++|+++..
T Consensus 227 ~~~~~~~D~vid~~-----g~---~---------~~~~~~~~~l~~~G~~v~~ 262 (338)
T cd08254 227 AGLGGGFDVIFDFV-----GT---Q---------PTFEDAQKAVKPGGRIVVV 262 (338)
T ss_pred HhcCCCceEEEECC-----CC---H---------HHHHHHHHHhhcCCEEEEE
Confidence 33456799988532 11 0 2456778999999999874
No 304
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=84.84 E-value=16 Score=30.15 Aligned_cols=115 Identities=14% Similarity=0.089 Sum_probs=64.7
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC---------CCCCceEeecCCCChhhHHHH
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------PIEGVIQVQGDITNARTAEVV 111 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~---------~~~~v~~~~gDi~~~~~~~~i 111 (249)
.+.+||=.|++ |+....+++.+.. .+..|++++.++.. ...++.++.+|+++.+....+
T Consensus 4 ~~~~vlItGa~-g~iG~~~a~~l~~-----------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 71 (238)
T PRK05786 4 KGKKVAIIGVS-EGLGYAVAYFALK-----------EGAQVCINSRNENKLKRMKKTLSKYGNIHYVVGDVSSTESARNV 71 (238)
T ss_pred CCcEEEEECCC-chHHHHHHHHHHH-----------CCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEECCCCCHHHHHHH
Confidence 35688888874 7788888776641 24589998887632 112567889999997765544
Q ss_pred HHhcC--CCcccEEEeCCCCCCC-CCCCcCHHH-HHH----HHHHHHHHHHHhccCCCEEEEEE
Q 025715 112 IRHFD--GCKADLVVCDGAPDVT-GLHDMDEFV-QSQ----LILAGLTVVTHVLKEGGKFIAKI 167 (249)
Q Consensus 112 ~~~~~--~~~~DlVlsD~~~~~~-g~~~~~~~~-~~~----l~~~~l~~a~~~Lk~gG~lv~k~ 167 (249)
.+... -+.+|.++........ ...+.+... ..+ -....+......++++|.+++..
T Consensus 72 ~~~~~~~~~~id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~s 135 (238)
T PRK05786 72 IEKAAKVLNAIDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVS 135 (238)
T ss_pred HHHHHHHhCCCCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEe
Confidence 33221 1357888877542211 111111000 001 01223445556677888887643
No 305
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=84.72 E-value=0.53 Score=39.50 Aligned_cols=33 Identities=18% Similarity=0.257 Sum_probs=28.3
Q ss_pred CeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCC
Q 025715 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQP 88 (249)
Q Consensus 43 ~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~ 88 (249)
-.+.|+|||-||+...++...+ +..|+|.+|.-
T Consensus 62 vefaDIGCGyGGLlv~Lsp~fP-------------dtLiLGmEIR~ 94 (249)
T KOG3115|consen 62 VEFADIGCGYGGLLMKLAPKFP-------------DTLILGMEIRD 94 (249)
T ss_pred ceEEeeccCccchhhhccccCc-------------cceeeeehhhH
Confidence 4799999999999998888774 68899999864
No 306
>PRK07578 short chain dehydrogenase; Provisional
Probab=84.48 E-value=20 Score=28.94 Aligned_cols=101 Identities=21% Similarity=0.254 Sum_probs=60.4
Q ss_pred eEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCCCCCceEeecCCCChhhHHHHHHhcCCCcccEE
Q 025715 44 RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLV 123 (249)
Q Consensus 44 ~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~~~~v~~~~gDi~~~~~~~~i~~~~~~~~~DlV 123 (249)
++|=.|+ .|+....+++.+.. . .+|+.++.++. .+..|+++.+..+.+.+.+ +.+|.|
T Consensus 2 ~vlItGa-s~giG~~la~~l~~-----------~-~~vi~~~r~~~-------~~~~D~~~~~~~~~~~~~~--~~id~l 59 (199)
T PRK07578 2 KILVIGA-SGTIGRAVVAELSK-----------R-HEVITAGRSSG-------DVQVDITDPASIRALFEKV--GKVDAV 59 (199)
T ss_pred eEEEEcC-CcHHHHHHHHHHHh-----------c-CcEEEEecCCC-------ceEecCCChHHHHHHHHhc--CCCCEE
Confidence 5677774 67788888877752 2 57888876542 3577999988777666554 369999
Q ss_pred EeCCCCCCCC-CCCcCHHHH---HH--H--HHHHHHHHHHhccCCCEEEEE
Q 025715 124 VCDGAPDVTG-LHDMDEFVQ---SQ--L--ILAGLTVVTHVLKEGGKFIAK 166 (249)
Q Consensus 124 lsD~~~~~~g-~~~~~~~~~---~~--l--~~~~l~~a~~~Lk~gG~lv~k 166 (249)
+.+......+ ..+.+.... .. + .......+...++++|.+++.
T Consensus 60 v~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~i 110 (199)
T PRK07578 60 VSAAGKVHFAPLAEMTDEDFNVGLQSKLMGQVNLVLIGQHYLNDGGSFTLT 110 (199)
T ss_pred EECCCCCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEE
Confidence 9887532111 111121111 11 1 123445556667788988764
No 307
>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional
Probab=84.04 E-value=25 Score=30.17 Aligned_cols=77 Identities=16% Similarity=0.047 Sum_probs=50.8
Q ss_pred CCeEEEEcCC-CChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCC--C-------CCCCceEeecCCCChhhHHHH
Q 025715 42 VKRVVDLCAA-PGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM--A-------PIEGVIQVQGDITNARTAEVV 111 (249)
Q Consensus 42 g~~vLDLG~g-pG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~--~-------~~~~v~~~~gDi~~~~~~~~i 111 (249)
++++|=.|++ .++....+++.+.. .+.+|+.++.+.. . .+..+..++.|+++.+..+.+
T Consensus 10 ~k~~lItGas~~~GIG~aia~~la~-----------~G~~V~l~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~ 78 (272)
T PRK08159 10 GKRGLILGVANNRSIAWGIAKACRA-----------AGAELAFTYQGDALKKRVEPLAAELGAFVAGHCDVTDEASIDAV 78 (272)
T ss_pred CCEEEEECCCCCCcHHHHHHHHHHH-----------CCCEEEEEcCchHHHHHHHHHHHhcCCceEEecCCCCHHHHHHH
Confidence 4688888987 58999998887752 2457766654321 0 122345678999998876665
Q ss_pred HHhcC--CCcccEEEeCCCC
Q 025715 112 IRHFD--GCKADLVVCDGAP 129 (249)
Q Consensus 112 ~~~~~--~~~~DlVlsD~~~ 129 (249)
.+.+. -+.+|+++.+...
T Consensus 79 ~~~~~~~~g~iD~lv~nAG~ 98 (272)
T PRK08159 79 FETLEKKWGKLDFVVHAIGF 98 (272)
T ss_pred HHHHHHhcCCCcEEEECCcc
Confidence 54432 1479999999753
No 308
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=83.99 E-value=10 Score=28.86 Aligned_cols=95 Identities=26% Similarity=0.263 Sum_probs=60.2
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCCCCCceEeecCCCChhhHHHHHHhcCCCc
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCK 119 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~~~~v~~~~gDi~~~~~~~~i~~~~~~~~ 119 (249)
.+| +|+++|.| .+...+ +++.+ .+..|+++|+++...-.|+.++.-|++++..- +- +.
T Consensus 13 ~~g-kVvEVGiG--~~~~VA-~~L~e-----------~g~dv~atDI~~~~a~~g~~~v~DDitnP~~~------iY-~~ 70 (129)
T COG1255 13 ARG-KVVEVGIG--FFLDVA-KRLAE-----------RGFDVLATDINEKTAPEGLRFVVDDITNPNIS------IY-EG 70 (129)
T ss_pred cCC-cEEEEccc--hHHHHH-HHHHH-----------cCCcEEEEecccccCcccceEEEccCCCccHH------Hh-hC
Confidence 344 99999864 555443 34431 23689999999975447899999999998631 11 45
Q ss_pred ccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCCC
Q 025715 120 ADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKD 172 (249)
Q Consensus 120 ~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~ 172 (249)
.|+|.|--+| .+|+..++..|..+ |-.+.++...++.
T Consensus 71 A~lIYSiRpp-------------pEl~~~ildva~aV---ga~l~I~pL~Ge~ 107 (129)
T COG1255 71 ADLIYSIRPP-------------PELQSAILDVAKAV---GAPLYIKPLTGEP 107 (129)
T ss_pred ccceeecCCC-------------HHHHHHHHHHHHhh---CCCEEEEecCCCC
Confidence 8999985322 12344455555432 5567777665544
No 309
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=83.97 E-value=26 Score=30.64 Aligned_cols=72 Identities=22% Similarity=0.203 Sum_probs=47.5
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC------------CCCceEeecCCCChhhH
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP------------IEGVIQVQGDITNARTA 108 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~------------~~~v~~~~gDi~~~~~~ 108 (249)
.+++||=.| |+|....++++++-. .+..|++++.++... ..+++++.+|+++.+..
T Consensus 4 ~~k~vlVtG-~~G~IG~~l~~~L~~-----------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~ 71 (325)
T PLN02989 4 GGKVVCVTG-ASGYIASWIVKLLLF-----------RGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSF 71 (325)
T ss_pred CCCEEEEEC-CchHHHHHHHHHHHH-----------CCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHH
Confidence 467888888 678888888876642 235676665554210 12577889999997654
Q ss_pred HHHHHhcCCCcccEEEeCCCC
Q 025715 109 EVVIRHFDGCKADLVVCDGAP 129 (249)
Q Consensus 109 ~~i~~~~~~~~~DlVlsD~~~ 129 (249)
..+. . .+|.|+...+.
T Consensus 72 ~~~~---~--~~d~vih~A~~ 87 (325)
T PLN02989 72 ELAI---D--GCETVFHTASP 87 (325)
T ss_pred HHHH---c--CCCEEEEeCCC
Confidence 4432 2 48999888753
No 310
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=83.87 E-value=1.1 Score=40.07 Aligned_cols=62 Identities=18% Similarity=0.180 Sum_probs=41.4
Q ss_pred EEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC------CCCceEeecCCCChhhHHHHHHhcCCC
Q 025715 45 VVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP------IEGVIQVQGDITNARTAEVVIRHFDGC 118 (249)
Q Consensus 45 vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~------~~~v~~~~gDi~~~~~~~~i~~~~~~~ 118 (249)
|+||.||.||++..+.+. + --.+.++|+++.+. .++ ..+.+|+.+... ..+ .
T Consensus 1 vidLF~G~GG~~~Gl~~a-G-------------~~~~~a~e~~~~a~~ty~~N~~~-~~~~~Di~~~~~-----~~~--~ 58 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQA-G-------------FKCVFASEIDKYAQKTYEANFGN-KVPFGDITKISP-----SDI--P 58 (315)
T ss_pred CEEEecCccHHHHHHHHc-C-------------CeEEEEEeCCHHHHHHHHHhCCC-CCCccChhhhhh-----hhC--C
Confidence 689999999999888643 2 12466899987531 334 456788877542 112 3
Q ss_pred cccEEEeCCC
Q 025715 119 KADLVVCDGA 128 (249)
Q Consensus 119 ~~DlVlsD~~ 128 (249)
.+|+++.-.+
T Consensus 59 ~~dvl~gg~P 68 (315)
T TIGR00675 59 DFDILLGGFP 68 (315)
T ss_pred CcCEEEecCC
Confidence 5899997654
No 311
>PHA01634 hypothetical protein
Probab=83.40 E-value=2 Score=33.40 Aligned_cols=45 Identities=9% Similarity=0.073 Sum_probs=34.2
Q ss_pred hhhhhcCcc-cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCC
Q 025715 31 QIDEEFNIF-EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM 89 (249)
Q Consensus 31 ei~~~~~~~-~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~ 89 (249)
|-...|+.+ -.+.+|+|+|++-|.-+.+.+.+. ..+|++++..+.
T Consensus 17 ey~~~Y~~idvk~KtV~dIGA~iGdSaiYF~l~G--------------AK~Vva~E~~~k 62 (156)
T PHA01634 17 EYPHAYGMLNVYQRTIQIVGADCGSSALYFLLRG--------------ASFVVQYEKEEK 62 (156)
T ss_pred HHHHHhhheeecCCEEEEecCCccchhhHHhhcC--------------ccEEEEeccCHH
Confidence 334445544 467899999999999998887653 379999999874
No 312
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=83.25 E-value=8.8 Score=34.60 Aligned_cols=94 Identities=15% Similarity=0.105 Sum_probs=51.9
Q ss_pred ccCCCeEEEEcCCCChHHHHH---HHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC----CCCceEeecCCCChhhHHHH
Q 025715 39 FEGVKRVVDLCAAPGSWSQVL---SRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----IEGVIQVQGDITNARTAEVV 111 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~l---~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~----~~~v~~~~gDi~~~~~~~~i 111 (249)
+++|.+||=.|+ |+....+ ++..+ ..+|+++|.++.+. --++..+ -|..+.+..+.+
T Consensus 189 i~~g~~VlV~G~--G~vG~~a~~lak~~G-------------~~~Vi~~~~~~~r~~~a~~~Ga~~~-i~~~~~~~~~~i 252 (371)
T cd08281 189 VRPGQSVAVVGL--GGVGLSALLGAVAAG-------------ASQVVAVDLNEDKLALARELGATAT-VNAGDPNAVEQV 252 (371)
T ss_pred CCCCCEEEEECC--CHHHHHHHHHHHHcC-------------CCcEEEEcCCHHHHHHHHHcCCceE-eCCCchhHHHHH
Confidence 467888888885 5555544 33333 12689998876431 0122111 122222333344
Q ss_pred HHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEE
Q 025715 112 IRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (249)
Q Consensus 112 ~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k 166 (249)
.+... +.+|+|+- +.|. . ..+..+.+.|+++|++++-
T Consensus 253 ~~~~~-~g~d~vid-----~~G~---~---------~~~~~~~~~l~~~G~iv~~ 289 (371)
T cd08281 253 RELTG-GGVDYAFE-----MAGS---V---------PALETAYEITRRGGTTVTA 289 (371)
T ss_pred HHHhC-CCCCEEEE-----CCCC---h---------HHHHHHHHHHhcCCEEEEE
Confidence 43333 36999984 2221 0 2456678899999999864
No 313
>PRK07326 short chain dehydrogenase; Provisional
Probab=82.91 E-value=11 Score=31.13 Aligned_cols=77 Identities=6% Similarity=0.039 Sum_probs=50.9
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC------CC---CCceEeecCCCChhhHHHH
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PI---EGVIQVQGDITNARTAEVV 111 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~------~~---~~v~~~~gDi~~~~~~~~i 111 (249)
.+.++|=.| |+|+....+++++-. .+.+|++++.++.. .+ .++.++.+|+.+.......
T Consensus 5 ~~~~ilItG-atg~iG~~la~~l~~-----------~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~D~~~~~~~~~~ 72 (237)
T PRK07326 5 KGKVALITG-GSKGIGFAIAEALLA-----------EGYKVAITARDQKELEEAAAELNNKGNVLGLAADVRDEADVQRA 72 (237)
T ss_pred CCCEEEEEC-CCCcHHHHHHHHHHH-----------CCCEEEEeeCCHHHHHHHHHHHhccCcEEEEEccCCCHHHHHHH
Confidence 356888888 588888888776641 23589999887632 11 3577889999987765444
Q ss_pred HHhcC--CCcccEEEeCCCC
Q 025715 112 IRHFD--GCKADLVVCDGAP 129 (249)
Q Consensus 112 ~~~~~--~~~~DlVlsD~~~ 129 (249)
.+.+. .+.+|.|+.....
T Consensus 73 ~~~~~~~~~~~d~vi~~ag~ 92 (237)
T PRK07326 73 VDAIVAAFGGLDVLIANAGV 92 (237)
T ss_pred HHHHHHHcCCCCEEEECCCC
Confidence 33221 1368999987643
No 314
>KOG4022 consensus Dihydropteridine reductase DHPR/QDPR [Amino acid transport and metabolism]
Probab=82.77 E-value=21 Score=29.11 Aligned_cols=111 Identities=23% Similarity=0.248 Sum_probs=60.5
Q ss_pred eEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCCCCCceEeecCC--CC--hhhHHHHHHhcCCCc
Q 025715 44 RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDI--TN--ARTAEVVIRHFDGCK 119 (249)
Q Consensus 44 ~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~~~~v~~~~gDi--~~--~~~~~~i~~~~~~~~ 119 (249)
||+=-| |-|.......+.+.. .+.-|..+|+++....+--..+.+|- +. .....+.-+.+.+++
T Consensus 5 rVivYG-GkGALGSacv~~Fka-----------nnywV~siDl~eNe~Ad~sI~V~~~~swtEQe~~v~~~vg~sL~gek 72 (236)
T KOG4022|consen 5 RVIVYG-GKGALGSACVEFFKA-----------NNYWVLSIDLSENEQADSSILVDGNKSWTEQEQSVLEQVGSSLQGEK 72 (236)
T ss_pred eEEEEc-CcchHhHHHHHHHHh-----------cCeEEEEEeecccccccceEEecCCcchhHHHHHHHHHHHHhhcccc
Confidence 444333 788888887776652 24578889998865322111222322 11 122344556678899
Q ss_pred ccEEEeCCCCCCCCCC-CcCHHHHHHHH--------HHHHHHHHHhccCCCEEEEE
Q 025715 120 ADLVVCDGAPDVTGLH-DMDEFVQSQLI--------LAGLTVVTHVLKEGGKFIAK 166 (249)
Q Consensus 120 ~DlVlsD~~~~~~g~~-~~~~~~~~~l~--------~~~l~~a~~~Lk~gG~lv~k 166 (249)
+|.|+|-..-...|.- ..+-....+|. .....+|...|||||.|.+.
T Consensus 73 vDav~CVAGGWAGGnAksKdl~KNaDLMwKQSvwtSaIsa~lAt~HLK~GGLL~Lt 128 (236)
T KOG4022|consen 73 VDAVFCVAGGWAGGNAKSKDLVKNADLMWKQSVWTSAISAKLATTHLKPGGLLQLT 128 (236)
T ss_pred cceEEEeeccccCCCcchhhhhhchhhHHHHHHHHHHHHHHHHHhccCCCceeeec
Confidence 9999997532222221 11111111111 11245677899999998874
No 315
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=82.74 E-value=27 Score=30.01 Aligned_cols=78 Identities=14% Similarity=0.047 Sum_probs=50.3
Q ss_pred CCCeEEEEcCCC-ChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC---------CCCCceEeecCCCChhhHHH
Q 025715 41 GVKRVVDLCAAP-GSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------PIEGVIQVQGDITNARTAEV 110 (249)
Q Consensus 41 ~g~~vLDLG~gp-G~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~---------~~~~v~~~~gDi~~~~~~~~ 110 (249)
.++++|=.|++. ++....+++.+.. ....|+.++.+... .......++.|+++.+..+.
T Consensus 6 ~~k~~lVTGas~~~GIG~aiA~~la~-----------~Ga~V~~~~r~~~~~~~~~~~~~~~g~~~~~~~Dv~d~~~v~~ 74 (271)
T PRK06505 6 QGKRGLIMGVANDHSIAWGIAKQLAA-----------QGAELAFTYQGEALGKRVKPLAESLGSDFVLPCDVEDIASVDA 74 (271)
T ss_pred CCCEEEEeCCCCCCcHHHHHHHHHHh-----------CCCEEEEecCchHHHHHHHHHHHhcCCceEEeCCCCCHHHHHH
Confidence 357899999886 4788888777642 24577777765310 01123457899999876655
Q ss_pred HHHhcC--CCcccEEEeCCCC
Q 025715 111 VIRHFD--GCKADLVVCDGAP 129 (249)
Q Consensus 111 i~~~~~--~~~~DlVlsD~~~ 129 (249)
+.+... -+.+|+++.+...
T Consensus 75 ~~~~~~~~~g~iD~lVnnAG~ 95 (271)
T PRK06505 75 VFEALEKKWGKLDFVVHAIGF 95 (271)
T ss_pred HHHHHHHHhCCCCEEEECCcc
Confidence 544322 1579999998753
No 316
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=82.49 E-value=30 Score=29.58 Aligned_cols=78 Identities=12% Similarity=-0.007 Sum_probs=51.3
Q ss_pred CCCeEEEEcCCC-ChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC---------CCCCceEeecCCCChhhHHH
Q 025715 41 GVKRVVDLCAAP-GSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------PIEGVIQVQGDITNARTAEV 110 (249)
Q Consensus 41 ~g~~vLDLG~gp-G~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~---------~~~~v~~~~gDi~~~~~~~~ 110 (249)
.++++|=.|++. +|....+++.+.. ....|+.++.+... ....+..+..|+++.+..+.
T Consensus 5 ~~k~~lITGas~~~GIG~aia~~la~-----------~G~~vil~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~ 73 (262)
T PRK07984 5 SGKRILVTGVASKLSIAYGIAQAMHR-----------EGAELAFTYQNDKLKGRVEEFAAQLGSDIVLPCDVAEDASIDA 73 (262)
T ss_pred CCCEEEEeCCCCCccHHHHHHHHHHH-----------CCCEEEEEecchhHHHHHHHHHhccCCceEeecCCCCHHHHHH
Confidence 357888899987 4888888777642 23577777665310 12345568899999877665
Q ss_pred HHHhcC--CCcccEEEeCCCC
Q 025715 111 VIRHFD--GCKADLVVCDGAP 129 (249)
Q Consensus 111 i~~~~~--~~~~DlVlsD~~~ 129 (249)
+.+... -+++|+++.+...
T Consensus 74 ~~~~~~~~~g~iD~linnAg~ 94 (262)
T PRK07984 74 MFAELGKVWPKFDGFVHSIGF 94 (262)
T ss_pred HHHHHHhhcCCCCEEEECCcc
Confidence 544322 1469999999753
No 317
>PRK07370 enoyl-(acyl carrier protein) reductase; Validated
Probab=82.33 E-value=30 Score=29.38 Aligned_cols=78 Identities=15% Similarity=0.038 Sum_probs=50.3
Q ss_pred CCCeEEEEcCC-CChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC------------CCCCceEeecCCCChhh
Q 025715 41 GVKRVVDLCAA-PGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------------PIEGVIQVQGDITNART 107 (249)
Q Consensus 41 ~g~~vLDLG~g-pG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~------------~~~~v~~~~gDi~~~~~ 107 (249)
.++++|=.|++ ++++...+++.+.. ...+|+..+.+... ....+..++.|+.+.+.
T Consensus 5 ~~k~~lItGas~~~GIG~aia~~la~-----------~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~ 73 (258)
T PRK07370 5 TGKKALVTGIANNRSIAWGIAQQLHA-----------AGAELGITYLPDEKGRFEKKVRELTEPLNPSLFLPCDVQDDAQ 73 (258)
T ss_pred CCcEEEEeCCCCCCchHHHHHHHHHH-----------CCCEEEEEecCcccchHHHHHHHHHhccCcceEeecCcCCHHH
Confidence 46788999985 68999998887752 23566655433210 01235577899999877
Q ss_pred HHHHHHhcC--CCcccEEEeCCCC
Q 025715 108 AEVVIRHFD--GCKADLVVCDGAP 129 (249)
Q Consensus 108 ~~~i~~~~~--~~~~DlVlsD~~~ 129 (249)
.+.+.+.+. -+.+|+++.+...
T Consensus 74 v~~~~~~~~~~~g~iD~lv~nag~ 97 (258)
T PRK07370 74 IEETFETIKQKWGKLDILVHCLAF 97 (258)
T ss_pred HHHHHHHHHHHcCCCCEEEEcccc
Confidence 655444332 1479999998753
No 318
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=82.01 E-value=1.9 Score=32.45 Aligned_cols=22 Identities=23% Similarity=0.311 Sum_probs=17.4
Q ss_pred cCCCeEEEEcCCCChHHHHHHH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSR 61 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~ 61 (249)
++...++|||||.|-..-.|..
T Consensus 57 ~~~~~FVDlGCGNGLLV~IL~~ 78 (112)
T PF07757_consen 57 QKFQGFVDLGCGNGLLVYILNS 78 (112)
T ss_pred CCCCceEEccCCchHHHHHHHh
Confidence 3456899999999988766654
No 319
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=81.78 E-value=31 Score=29.27 Aligned_cols=76 Identities=14% Similarity=0.014 Sum_probs=47.3
Q ss_pred CCeEEEEcCCCC-hHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCC-----CC----CCCceEeecCCCChhhHHHH
Q 025715 42 VKRVVDLCAAPG-SWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM-----AP----IEGVIQVQGDITNARTAEVV 111 (249)
Q Consensus 42 g~~vLDLG~gpG-~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~-----~~----~~~v~~~~gDi~~~~~~~~i 111 (249)
|+.+|=-|++.| +....+++.+.. ...+|+..+.++. .. ......++.|+++.+..+.+
T Consensus 8 ~k~~lITGas~~~GIG~a~a~~la~-----------~G~~v~~~~r~~~~~~~~~~l~~~~g~~~~~~~Dv~~~~~v~~~ 76 (260)
T PRK06603 8 GKKGLITGIANNMSISWAIAQLAKK-----------HGAELWFTYQSEVLEKRVKPLAEEIGCNFVSELDVTNPKSISNL 76 (260)
T ss_pred CcEEEEECCCCCcchHHHHHHHHHH-----------cCCEEEEEeCchHHHHHHHHHHHhcCCceEEEccCCCHHHHHHH
Confidence 567888888775 677777666541 2357777776531 00 12233468899998766555
Q ss_pred HHhcC--CCcccEEEeCCC
Q 025715 112 IRHFD--GCKADLVVCDGA 128 (249)
Q Consensus 112 ~~~~~--~~~~DlVlsD~~ 128 (249)
.+.+. -+.+|+++.+..
T Consensus 77 ~~~~~~~~g~iDilVnnag 95 (260)
T PRK06603 77 FDDIKEKWGSFDFLLHGMA 95 (260)
T ss_pred HHHHHHHcCCccEEEEccc
Confidence 44321 157999998864
No 320
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=81.55 E-value=32 Score=29.65 Aligned_cols=78 Identities=12% Similarity=0.017 Sum_probs=51.2
Q ss_pred CCCeEEEEcCCC-ChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCC-----C----CCCCceEeecCCCChhhHHH
Q 025715 41 GVKRVVDLCAAP-GSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM-----A----PIEGVIQVQGDITNARTAEV 110 (249)
Q Consensus 41 ~g~~vLDLG~gp-G~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~-----~----~~~~v~~~~gDi~~~~~~~~ 110 (249)
.++++|=.|++. +|....+++++.. .+..|+..+++.. . .+.+-..++.|+++.+..+.
T Consensus 4 ~~k~~lItGas~~~GIG~aiA~~la~-----------~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~ 72 (274)
T PRK08415 4 KGKKGLIVGVANNKSIAYGIAKACFE-----------QGAELAFTYLNEALKKRVEPIAQELGSDYVYELDVSKPEHFKS 72 (274)
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHHH-----------CCCEEEEEecCHHHHHHHHHHHHhcCCceEEEecCCCHHHHHH
Confidence 357888889874 6888888887652 2457777777631 0 11111467899999876655
Q ss_pred HHHhcC--CCcccEEEeCCCC
Q 025715 111 VIRHFD--GCKADLVVCDGAP 129 (249)
Q Consensus 111 i~~~~~--~~~~DlVlsD~~~ 129 (249)
+.+.+. .+++|+++.+...
T Consensus 73 ~~~~i~~~~g~iDilVnnAG~ 93 (274)
T PRK08415 73 LAESLKKDLGKIDFIVHSVAF 93 (274)
T ss_pred HHHHHHHHcCCCCEEEECCcc
Confidence 544332 2579999998753
No 321
>PRK10458 DNA cytosine methylase; Provisional
Probab=81.15 E-value=3.1 Score=39.34 Aligned_cols=51 Identities=16% Similarity=0.107 Sum_probs=35.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC------C---CCceEeecCCCChh
Q 025715 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP------I---EGVIQVQGDITNAR 106 (249)
Q Consensus 42 g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~------~---~~v~~~~gDi~~~~ 106 (249)
..+++||.||.||++..+-.. + --.|.++|+++.+. . ++...+.+||++..
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~a-G-------------~~~v~a~Eid~~A~~TY~~N~~~~p~~~~~~~DI~~i~ 147 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAI-G-------------GQCVFTSEWNKHAVRTYKANWYCDPATHRFNEDIRDIT 147 (467)
T ss_pred CceEEEeCcCccHHHHHHHHc-C-------------CEEEEEEechHHHHHHHHHHcCCCCccceeccChhhCc
Confidence 569999999999999888543 3 13567899987541 1 33445667887653
No 322
>PRK08267 short chain dehydrogenase; Provisional
Probab=81.15 E-value=27 Score=29.35 Aligned_cols=74 Identities=11% Similarity=0.092 Sum_probs=48.2
Q ss_pred eEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC------CC--CCceEeecCCCChhhHHHHHHhc
Q 025715 44 RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PI--EGVIQVQGDITNARTAEVVIRHF 115 (249)
Q Consensus 44 ~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~------~~--~~v~~~~gDi~~~~~~~~i~~~~ 115 (249)
++|=.|+ +|+....+++.+.. ....|+.++.++.. .+ .++.++++|+++.+....+....
T Consensus 3 ~vlItGa-sg~iG~~la~~l~~-----------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~ 70 (260)
T PRK08267 3 SIFITGA-ASGIGRATALLFAA-----------EGWRVGAYDINEAGLAALAAELGAGNAWTGALDVTDRAAWDAALADF 70 (260)
T ss_pred EEEEeCC-CchHHHHHHHHHHH-----------CCCeEEEEeCCHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHH
Confidence 4666664 57778877776642 23588888876532 12 25778899999977655544332
Q ss_pred C---CCcccEEEeCCCC
Q 025715 116 D---GCKADLVVCDGAP 129 (249)
Q Consensus 116 ~---~~~~DlVlsD~~~ 129 (249)
. .+++|.|+++...
T Consensus 71 ~~~~~~~id~vi~~ag~ 87 (260)
T PRK08267 71 AAATGGRLDVLFNNAGI 87 (260)
T ss_pred HHHcCCCCCEEEECCCC
Confidence 1 3579999988653
No 323
>PRK06398 aldose dehydrogenase; Validated
Probab=81.02 E-value=33 Score=29.02 Aligned_cols=75 Identities=12% Similarity=0.072 Sum_probs=50.4
Q ss_pred CCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCCCCCceEeecCCCChhhHHHHHHhcC--CCc
Q 025715 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFD--GCK 119 (249)
Q Consensus 42 g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~~~~v~~~~gDi~~~~~~~~i~~~~~--~~~ 119 (249)
|+++|=.|+ .|+....+++++.. .+.+|+.++.++.. ..++.++.+|+++.+....+.+.+. .+.
T Consensus 6 gk~vlItGa-s~gIG~~ia~~l~~-----------~G~~Vi~~~r~~~~-~~~~~~~~~D~~~~~~i~~~~~~~~~~~~~ 72 (258)
T PRK06398 6 DKVAIVTGG-SQGIGKAVVNRLKE-----------EGSNVINFDIKEPS-YNDVDYFKVDVSNKEQVIKGIDYVISKYGR 72 (258)
T ss_pred CCEEEEECC-CchHHHHHHHHHHH-----------CCCeEEEEeCCccc-cCceEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 568888885 67777777776642 24688888877543 2357788999999876554443321 146
Q ss_pred ccEEEeCCCC
Q 025715 120 ADLVVCDGAP 129 (249)
Q Consensus 120 ~DlVlsD~~~ 129 (249)
+|.|+.+...
T Consensus 73 id~li~~Ag~ 82 (258)
T PRK06398 73 IDILVNNAGI 82 (258)
T ss_pred CCEEEECCCC
Confidence 9999998643
No 324
>PRK08265 short chain dehydrogenase; Provisional
Probab=80.53 E-value=34 Score=28.92 Aligned_cols=75 Identities=15% Similarity=0.108 Sum_probs=49.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC------CC-CCceEeecCCCChhhHHHHHHh
Q 025715 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PI-EGVIQVQGDITNARTAEVVIRH 114 (249)
Q Consensus 42 g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~------~~-~~v~~~~gDi~~~~~~~~i~~~ 114 (249)
+.++|=.| |+|+....+++.+.. .+..|+.+|.++.. .+ .++.++++|+++.+....+.+.
T Consensus 6 ~k~vlItG-as~gIG~~ia~~l~~-----------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 73 (261)
T PRK08265 6 GKVAIVTG-GATLIGAAVARALVA-----------AGARVAIVDIDADNGAAVAASLGERARFIATDITDDAAIERAVAT 73 (261)
T ss_pred CCEEEEEC-CCChHHHHHHHHHHH-----------CCCEEEEEeCCHHHHHHHHHHhCCeeEEEEecCCCHHHHHHHHHH
Confidence 46777777 456777777776642 24688888887632 11 2467889999998765544332
Q ss_pred cC--CCcccEEEeCCC
Q 025715 115 FD--GCKADLVVCDGA 128 (249)
Q Consensus 115 ~~--~~~~DlVlsD~~ 128 (249)
.. -+.+|.++.+..
T Consensus 74 ~~~~~g~id~lv~~ag 89 (261)
T PRK08265 74 VVARFGRVDILVNLAC 89 (261)
T ss_pred HHHHhCCCCEEEECCC
Confidence 21 146899998864
No 325
>PRK06701 short chain dehydrogenase; Provisional
Probab=80.09 E-value=39 Score=29.31 Aligned_cols=113 Identities=12% Similarity=0.091 Sum_probs=62.7
Q ss_pred CCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC-------C----CCceEeecCCCChhhHHH
Q 025715 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP-------I----EGVIQVQGDITNARTAEV 110 (249)
Q Consensus 42 g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~-------~----~~v~~~~gDi~~~~~~~~ 110 (249)
++++|=.|+ .|+....+++++.. ...+|+.++.++... + .++.++.+|+++.+....
T Consensus 46 ~k~iLItGa-sggIG~~la~~l~~-----------~G~~V~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~ 113 (290)
T PRK06701 46 GKVALITGG-DSGIGRAVAVLFAK-----------EGADIAIVYLDEHEDANETKQRVEKEGVKCLLIPGDVSDEAFCKD 113 (290)
T ss_pred CCEEEEeCC-CcHHHHHHHHHHHH-----------CCCEEEEEeCCcchHHHHHHHHHHhcCCeEEEEEccCCCHHHHHH
Confidence 568888885 66667777766641 236788887764221 1 236678899999876555
Q ss_pred HHHhcC--CCcccEEEeCCCCCC--CCCCCcCHHH---HHH----HHHHHHHHHHHhccCCCEEEEE
Q 025715 111 VIRHFD--GCKADLVVCDGAPDV--TGLHDMDEFV---QSQ----LILAGLTVVTHVLKEGGKFIAK 166 (249)
Q Consensus 111 i~~~~~--~~~~DlVlsD~~~~~--~g~~~~~~~~---~~~----l~~~~l~~a~~~Lk~gG~lv~k 166 (249)
+.+... .+.+|.|+.+..... ....+.+... ..+ -....+..+...++++|.++..
T Consensus 114 ~~~~i~~~~~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~i 180 (290)
T PRK06701 114 AVEETVRELGRLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINT 180 (290)
T ss_pred HHHHHHHHcCCCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEE
Confidence 443221 146899998764211 1111122111 111 1133444555566778888763
No 326
>PLN02653 GDP-mannose 4,6-dehydratase
Probab=80.01 E-value=35 Score=30.17 Aligned_cols=73 Identities=18% Similarity=0.038 Sum_probs=47.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC----C---C--------CCceEeecCCCChh
Q 025715 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----P---I--------EGVIQVQGDITNAR 106 (249)
Q Consensus 42 g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~----~---~--------~~v~~~~gDi~~~~ 106 (249)
+++||=.| |+|....++.+.+.. .+.+|++++..+.. . + .++.++.+|+++.+
T Consensus 6 ~~~vlVTG-atGfiG~~l~~~L~~-----------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~ 73 (340)
T PLN02653 6 RKVALITG-ITGQDGSYLTEFLLS-----------KGYEVHGIIRRSSNFNTQRLDHIYIDPHPNKARMKLHYGDLSDAS 73 (340)
T ss_pred CCEEEEEC-CCCccHHHHHHHHHH-----------CCCEEEEEecccccccccchhhhccccccccCceEEEEecCCCHH
Confidence 46777777 578888888776642 23588888765421 0 1 24678899999976
Q ss_pred hHHHHHHhcCCCcccEEEeCCCC
Q 025715 107 TAEVVIRHFDGCKADLVVCDGAP 129 (249)
Q Consensus 107 ~~~~i~~~~~~~~~DlVlsD~~~ 129 (249)
......+. ..+|+|+..++.
T Consensus 74 ~~~~~~~~---~~~d~Vih~A~~ 93 (340)
T PLN02653 74 SLRRWLDD---IKPDEVYNLAAQ 93 (340)
T ss_pred HHHHHHHH---cCCCEEEECCcc
Confidence 55444432 248999888754
No 327
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=79.43 E-value=50 Score=30.21 Aligned_cols=75 Identities=24% Similarity=0.174 Sum_probs=52.1
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC------------CCCCceEeecCCCChhhH
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------------PIEGVIQVQGDITNARTA 108 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~------------~~~~v~~~~gDi~~~~~~ 108 (249)
.+++||=.| |+|....++.+.+-. .+..|++++.++.. ..++++++.+|+++.+..
T Consensus 59 ~~~kVLVtG-atG~IG~~l~~~Ll~-----------~G~~V~~l~R~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l 126 (390)
T PLN02657 59 KDVTVLVVG-ATGYIGKFVVRELVR-----------RGYNVVAVAREKSGIRGKNGKEDTKKELPGAEVVFGDVTDADSL 126 (390)
T ss_pred CCCEEEEEC-CCcHHHHHHHHHHHH-----------CCCEEEEEEechhhccccchhhHHhhhcCCceEEEeeCCCHHHH
Confidence 467888888 689999888776631 23588888876521 124788899999998766
Q ss_pred HHHHHhcCCCcccEEEeCCC
Q 025715 109 EVVIRHFDGCKADLVVCDGA 128 (249)
Q Consensus 109 ~~i~~~~~~~~~DlVlsD~~ 128 (249)
..+.+... ..+|.|++...
T Consensus 127 ~~~~~~~~-~~~D~Vi~~aa 145 (390)
T PLN02657 127 RKVLFSEG-DPVDVVVSCLA 145 (390)
T ss_pred HHHHHHhC-CCCcEEEECCc
Confidence 55543321 16999997654
No 328
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=79.41 E-value=0.91 Score=38.87 Aligned_cols=70 Identities=19% Similarity=0.142 Sum_probs=40.2
Q ss_pred cCCC--eEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC---------------C-----CCCceE
Q 025715 40 EGVK--RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------------P-----IEGVIQ 97 (249)
Q Consensus 40 ~~g~--~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~---------------~-----~~~v~~ 97 (249)
++|. +|||.=+|=|.=+..++. +| ++|++++.+|.. . ..+++.
T Consensus 72 k~~~~~~VLDaTaGLG~Da~vlA~-~G--------------~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l 136 (234)
T PF04445_consen 72 KPGMRPSVLDATAGLGRDAFVLAS-LG--------------CKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQL 136 (234)
T ss_dssp BTTB---EEETT-TTSHHHHHHHH-HT----------------EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEE
T ss_pred CCCCCCEEEECCCcchHHHHHHHc-cC--------------CeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEE
Confidence 4553 999999999999999885 45 689999999841 0 125677
Q ss_pred eecCCCChhhHHHHHHhcCCCcccEEEeCCCCCC
Q 025715 98 VQGDITNARTAEVVIRHFDGCKADLVVCDGAPDV 131 (249)
Q Consensus 98 ~~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~~~~ 131 (249)
+++|..+.-. ....++|+|..|+.+..
T Consensus 137 ~~~d~~~~L~-------~~~~s~DVVY~DPMFp~ 163 (234)
T PF04445_consen 137 IHGDALEYLR-------QPDNSFDVVYFDPMFPE 163 (234)
T ss_dssp EES-CCCHCC-------CHSS--SEEEE--S---
T ss_pred EcCCHHHHHh-------hcCCCCCEEEECCCCCC
Confidence 8888776311 12479999999987654
No 329
>PRK07454 short chain dehydrogenase; Provisional
Probab=78.85 E-value=27 Score=28.97 Aligned_cols=76 Identities=9% Similarity=-0.065 Sum_probs=50.4
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC----------CCCceEeecCCCChhhHHH
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----------IEGVIQVQGDITNARTAEV 110 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~----------~~~v~~~~gDi~~~~~~~~ 110 (249)
.++++|=.| |+|++...+++++.. .+.+|+.++.++... -.++.++.+|+++.+....
T Consensus 5 ~~k~vlItG-~sg~iG~~la~~l~~-----------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 72 (241)
T PRK07454 5 SMPRALITG-ASSGIGKATALAFAK-----------AGWDLALVARSQDALEALAAELRSTGVKAAAYSIDLSNPEAIAP 72 (241)
T ss_pred CCCEEEEeC-CCchHHHHHHHHHHH-----------CCCEEEEEeCCHHHHHHHHHHHHhCCCcEEEEEccCCCHHHHHH
Confidence 345788888 478888888887742 235899998875321 1256778999999875544
Q ss_pred HHHhcC--CCcccEEEeCCC
Q 025715 111 VIRHFD--GCKADLVVCDGA 128 (249)
Q Consensus 111 i~~~~~--~~~~DlVlsD~~ 128 (249)
..+.+. .+..|.|+.+..
T Consensus 73 ~~~~~~~~~~~id~lv~~ag 92 (241)
T PRK07454 73 GIAELLEQFGCPDVLINNAG 92 (241)
T ss_pred HHHHHHHHcCCCCEEEECCC
Confidence 333221 146899998764
No 330
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=78.75 E-value=24 Score=29.34 Aligned_cols=96 Identities=18% Similarity=0.183 Sum_probs=52.2
Q ss_pred CcccCCCeEEEEcCCC-ChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC--C--CCc-eEeecCCCChhhHHH
Q 025715 37 NIFEGVKRVVDLCAAP-GSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP--I--EGV-IQVQGDITNARTAEV 110 (249)
Q Consensus 37 ~~~~~g~~vLDLG~gp-G~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~--~--~~v-~~~~gDi~~~~~~~~ 110 (249)
..+.++.+||-.|+|+ |.....+++..+ .+|++++.++... + .+. ..+ |..+......
T Consensus 130 ~~~~~~~~vli~g~~~~G~~~~~~a~~~g--------------~~v~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~ 193 (271)
T cd05188 130 GVLKPGDTVLVLGAGGVGLLAAQLAKAAG--------------ARVIVTDRSDEKLELAKELGADHVI--DYKEEDLEEE 193 (271)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC--------------CeEEEEcCCHHHHHHHHHhCCceec--cCCcCCHHHH
Confidence 3346789999999876 333333444433 6888888775220 0 111 111 2222222222
Q ss_pred HHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEE
Q 025715 111 VIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (249)
Q Consensus 111 i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k 166 (249)
+. ....+.+|+|+.... .. ..+..+.+.|+++|+++.-
T Consensus 194 ~~-~~~~~~~d~vi~~~~-----~~------------~~~~~~~~~l~~~G~~v~~ 231 (271)
T cd05188 194 LR-LTGGGGADVVIDAVG-----GP------------ETLAQALRLLRPGGRIVVV 231 (271)
T ss_pred HH-HhcCCCCCEEEECCC-----CH------------HHHHHHHHhcccCCEEEEE
Confidence 22 233467999986431 10 1344567889999999863
No 331
>PRK12428 3-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=78.61 E-value=9.6 Score=32.04 Aligned_cols=84 Identities=8% Similarity=0.082 Sum_probs=49.2
Q ss_pred CCeEEEecCCCCCCCCCceEeecCCCChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHH--HHHHHHHHHH
Q 025715 78 LPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQL--ILAGLTVVTH 155 (249)
Q Consensus 78 ~~~vvavDi~~~~~~~~v~~~~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l--~~~~l~~a~~ 155 (249)
+.+|+.+|+++... ....+++.|+++.+..+.+.+.+. +.+|.|+++...... ...+......+ ....++.+..
T Consensus 9 G~~Vv~~~r~~~~~-~~~~~~~~Dl~~~~~v~~~~~~~~-~~iD~li~nAG~~~~--~~~~~~~~vN~~~~~~l~~~~~~ 84 (241)
T PRK12428 9 GARVIGVDRREPGM-TLDGFIQADLGDPASIDAAVAALP-GRIDALFNIAGVPGT--APVELVARVNFLGLRHLTEALLP 84 (241)
T ss_pred CCEEEEEeCCcchh-hhhHhhcccCCCHHHHHHHHHHhc-CCCeEEEECCCCCCC--CCHHHhhhhchHHHHHHHHHHHH
Confidence 36888888876432 223567899999887766665544 579999998754211 11111111111 1234455556
Q ss_pred hccCCCEEEE
Q 025715 156 VLKEGGKFIA 165 (249)
Q Consensus 156 ~Lk~gG~lv~ 165 (249)
.++++|+++.
T Consensus 85 ~~~~~g~Iv~ 94 (241)
T PRK12428 85 RMAPGGAIVN 94 (241)
T ss_pred hccCCcEEEE
Confidence 6667788876
No 332
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=78.59 E-value=2.1 Score=35.25 Aligned_cols=34 Identities=18% Similarity=0.175 Sum_probs=24.6
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCC
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQP 88 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~ 88 (249)
.+|..|||-.||+|.-+.++.+ ++ -+.+|+|+++
T Consensus 190 ~~gdiVlDpF~GSGTT~~aa~~-l~--------------R~~ig~E~~~ 223 (231)
T PF01555_consen 190 NPGDIVLDPFAGSGTTAVAAEE-LG--------------RRYIGIEIDE 223 (231)
T ss_dssp -TT-EEEETT-TTTHHHHHHHH-TT---------------EEEEEESSH
T ss_pred ccceeeehhhhccChHHHHHHH-cC--------------CeEEEEeCCH
Confidence 6899999999999997766554 43 5799999876
No 333
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=78.02 E-value=2.8 Score=39.65 Aligned_cols=97 Identities=21% Similarity=0.158 Sum_probs=63.0
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC--C-CCc---------eEeecCCCChhh
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP--I-EGV---------IQVQGDITNART 107 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~--~-~~v---------~~~~gDi~~~~~ 107 (249)
.++.+|||.=+++|--+..+++.++ .-..|+|.|.++... + .++ ...++|.....
T Consensus 108 ~~~l~vLealsAtGlrslRya~El~------------~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM- 174 (525)
T KOG1253|consen 108 EKSLRVLEALSATGLRSLRYAKELP------------GVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLM- 174 (525)
T ss_pred cCcchHHHHhhhhhHHHHHHHHHhc------------chhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHH-
Confidence 3568999999999999998888876 346899999988541 1 122 22233332211
Q ss_pred HHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEE
Q 025715 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKI 167 (249)
Q Consensus 108 ~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~ 167 (249)
+........||+|-.|+.=.. . ..|..|.+.++.||.|.++.
T Consensus 175 ---~~~~~~~~~FDvIDLDPyGs~------s---------~FLDsAvqav~~gGLL~vT~ 216 (525)
T KOG1253|consen 175 ---YEHPMVAKFFDVIDLDPYGSP------S---------PFLDSAVQAVRDGGLLCVTC 216 (525)
T ss_pred ---HhccccccccceEecCCCCCc------c---------HHHHHHHHHhhcCCEEEEEe
Confidence 111112368999999962111 1 25778889999999998754
No 334
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=78.02 E-value=12 Score=33.92 Aligned_cols=87 Identities=18% Similarity=0.051 Sum_probs=57.6
Q ss_pred hhhhHHhhhhhcCcccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCCC----CCceEeec
Q 025715 25 SAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPI----EGVIQVQG 100 (249)
Q Consensus 25 a~~KL~ei~~~~~~~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~~----~~v~~~~g 100 (249)
.+|.|.+.-.+--+...+++||=.| |+|....++++.+.. .+-+|+++|....... ..+.++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~IlVtG-gtGfIG~~l~~~L~~-----------~G~~V~~v~r~~~~~~~~~~~~~~~~~~ 71 (370)
T PLN02695 4 GAYTLAELEREPYWPSEKLRICITG-AGGFIASHIARRLKA-----------EGHYIIASDWKKNEHMSEDMFCHEFHLV 71 (370)
T ss_pred cccchhhcCCCCCCCCCCCEEEEEC-CccHHHHHHHHHHHh-----------CCCEEEEEEeccccccccccccceEEEC
Confidence 4567777665555667788999666 789999998887742 2348999997542211 13567889
Q ss_pred CCCChhhHHHHHHhcCCCcccEEEeCCC
Q 025715 101 DITNARTAEVVIRHFDGCKADLVVCDGA 128 (249)
Q Consensus 101 Di~~~~~~~~i~~~~~~~~~DlVlsD~~ 128 (249)
|+++......+ + ..+|.|+.-.+
T Consensus 72 Dl~d~~~~~~~---~--~~~D~Vih~Aa 94 (370)
T PLN02695 72 DLRVMENCLKV---T--KGVDHVFNLAA 94 (370)
T ss_pred CCCCHHHHHHH---H--hCCCEEEEccc
Confidence 99986543322 2 25798887553
No 335
>PRK05693 short chain dehydrogenase; Provisional
Probab=77.75 E-value=35 Score=28.98 Aligned_cols=74 Identities=11% Similarity=0.061 Sum_probs=48.6
Q ss_pred eEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC----CCCceEeecCCCChhhHHHHHHhc--CC
Q 025715 44 RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----IEGVIQVQGDITNARTAEVVIRHF--DG 117 (249)
Q Consensus 44 ~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~----~~~v~~~~gDi~~~~~~~~i~~~~--~~ 117 (249)
++|=.| |+|++...+++.+.. .+.+|++++.++... -.++.++.+|+.+.+..+.+.+.. ..
T Consensus 3 ~vlItG-asggiG~~la~~l~~-----------~G~~V~~~~r~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 70 (274)
T PRK05693 3 VVLITG-CSSGIGRALADAFKA-----------AGYEVWATARKAEDVEALAAAGFTAVQLDVNDGAALARLAEELEAEH 70 (274)
T ss_pred EEEEec-CCChHHHHHHHHHHH-----------CCCEEEEEeCCHHHHHHHHHCCCeEEEeeCCCHHHHHHHHHHHHHhc
Confidence 455556 567888888776641 246888888775321 135677889999987665554433 12
Q ss_pred CcccEEEeCCCC
Q 025715 118 CKADLVVCDGAP 129 (249)
Q Consensus 118 ~~~DlVlsD~~~ 129 (249)
+.+|.|+.+...
T Consensus 71 ~~id~vi~~ag~ 82 (274)
T PRK05693 71 GGLDVLINNAGY 82 (274)
T ss_pred CCCCEEEECCCC
Confidence 479999998754
No 336
>PRK07102 short chain dehydrogenase; Provisional
Probab=77.37 E-value=34 Score=28.43 Aligned_cols=73 Identities=11% Similarity=0.078 Sum_probs=49.5
Q ss_pred CeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC-----------CCCceEeecCCCChhhHHHH
Q 025715 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP-----------IEGVIQVQGDITNARTAEVV 111 (249)
Q Consensus 43 ~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~-----------~~~v~~~~gDi~~~~~~~~i 111 (249)
++++=.| |+|+....+++++.. .+..|++++.++... -.++.++++|+.+......+
T Consensus 2 ~~vlItG-as~giG~~~a~~l~~-----------~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 69 (243)
T PRK07102 2 KKILIIG-ATSDIARACARRYAA-----------AGARLYLAARDVERLERLADDLRARGAVAVSTHELDILDTASHAAF 69 (243)
T ss_pred cEEEEEc-CCcHHHHHHHHHHHh-----------cCCEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEecCCCChHHHHHH
Confidence 4677777 568888888777642 235889988876320 13577889999998766555
Q ss_pred HHhcCCCcccEEEeCCC
Q 025715 112 IRHFDGCKADLVVCDGA 128 (249)
Q Consensus 112 ~~~~~~~~~DlVlsD~~ 128 (249)
.+... ..+|.|+.+..
T Consensus 70 ~~~~~-~~~d~vv~~ag 85 (243)
T PRK07102 70 LDSLP-ALPDIVLIAVG 85 (243)
T ss_pred HHHHh-hcCCEEEECCc
Confidence 54433 35799998753
No 337
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=77.13 E-value=24 Score=31.57 Aligned_cols=108 Identities=18% Similarity=0.091 Sum_probs=59.3
Q ss_pred hHHhhhhhcCcccCCCeEEEEcCCC--ChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-C-C--CCc-eEeec
Q 025715 28 KLLQIDEEFNIFEGVKRVVDLCAAP--GSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-P-I--EGV-IQVQG 100 (249)
Q Consensus 28 KL~ei~~~~~~~~~g~~vLDLG~gp--G~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-~-~--~~v-~~~~g 100 (249)
..+.....+.-+++|++||=.|++. |.+...+++.++ ..++++--++.+ . . .+. ..+
T Consensus 129 TA~~~l~~~~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G--------------~~~v~~~~s~~k~~~~~~lGAd~vi-- 192 (326)
T COG0604 129 TAWLALFDRAGLKPGETVLVHGAAGGVGSAAIQLAKALG--------------ATVVAVVSSSEKLELLKELGADHVI-- 192 (326)
T ss_pred HHHHHHHHhcCCCCCCEEEEecCCchHHHHHHHHHHHcC--------------CcEEEEecCHHHHHHHHhcCCCEEE--
Confidence 4455544444467899999998543 334444566554 255554444321 1 0 121 112
Q ss_pred CCCChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEec
Q 025715 101 DITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFR 169 (249)
Q Consensus 101 Di~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~ 169 (249)
|..+.+..+++.+...+..+|+|+-- .|- ..+..+...|+++|+++.--..
T Consensus 193 ~y~~~~~~~~v~~~t~g~gvDvv~D~-----vG~-------------~~~~~~l~~l~~~G~lv~ig~~ 243 (326)
T COG0604 193 NYREEDFVEQVRELTGGKGVDVVLDT-----VGG-------------DTFAASLAALAPGGRLVSIGAL 243 (326)
T ss_pred cCCcccHHHHHHHHcCCCCceEEEEC-----CCH-------------HHHHHHHHHhccCCEEEEEecC
Confidence 22232234445544455579999952 221 2455678899999999975443
No 338
>PRK08264 short chain dehydrogenase; Validated
Probab=76.92 E-value=16 Score=30.23 Aligned_cols=75 Identities=15% Similarity=0.115 Sum_probs=52.3
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCC-eEEEecCCCCCCC---CCceEeecCCCChhhHHHHHHhcC
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLP-LIVAIDLQPMAPI---EGVIQVQGDITNARTAEVVIRHFD 116 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~-~vvavDi~~~~~~---~~v~~~~gDi~~~~~~~~i~~~~~ 116 (249)
.+.++|=.| |+|+....+++.+.. ... .|+.++.++.... .++.++.+|+.+.+..+.+.+.+
T Consensus 5 ~~~~vlItG-gsg~iG~~la~~l~~-----------~G~~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~- 71 (238)
T PRK08264 5 KGKVVLVTG-ANRGIGRAFVEQLLA-----------RGAAKVYAAARDPESVTDLGPRVVPLQLDVTDPASVAAAAEAA- 71 (238)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHH-----------CCcccEEEEecChhhhhhcCCceEEEEecCCCHHHHHHHHHhc-
Confidence 346788888 578888887776641 234 7888887754321 35778899999987766666543
Q ss_pred CCcccEEEeCCCC
Q 025715 117 GCKADLVVCDGAP 129 (249)
Q Consensus 117 ~~~~DlVlsD~~~ 129 (249)
+.+|+|++....
T Consensus 72 -~~id~vi~~ag~ 83 (238)
T PRK08264 72 -SDVTILVNNAGI 83 (238)
T ss_pred -CCCCEEEECCCc
Confidence 358999998754
No 339
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=75.83 E-value=10 Score=36.15 Aligned_cols=111 Identities=15% Similarity=0.107 Sum_probs=59.6
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC--------CCCc-----eEeecCCCC-h
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP--------IEGV-----IQVQGDITN-A 105 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~--------~~~v-----~~~~gDi~~-~ 105 (249)
.|++.|.|.+||+|++.....+.+.. +.....+++.+..+..- +.++ ....+|-.. +
T Consensus 216 dp~~~~~Dp~~Gsg~~L~~~~~~~~~---------~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~t~~~~~~dtl~~~ 286 (501)
T TIGR00497 216 DTVDDVYDMACGSGSLLLQVIKVLGE---------KTSLVSYYGQEINHTTYNLCRMNMILHNIDYANFNIINADTLTTK 286 (501)
T ss_pred CCCCcccccccchHHHHHHHHHHhcc---------cccceeEEEEeCchHHHHHHHHHHHHcCCCccccCcccCCcCCCc
Confidence 46789999999999998755443320 01224577777776320 1111 112233222 1
Q ss_pred hhHHHHHHhcCCCcccEEEeCCCCCCC---C-CC---CcCHHH-------HHHHHHHHHHHHHHhccCCCEEEEE
Q 025715 106 RTAEVVIRHFDGCKADLVVCDGAPDVT---G-LH---DMDEFV-------QSQLILAGLTVVTHVLKEGGKFIAK 166 (249)
Q Consensus 106 ~~~~~i~~~~~~~~~DlVlsD~~~~~~---g-~~---~~~~~~-------~~~l~~~~l~~a~~~Lk~gG~lv~k 166 (249)
. ......||.|++|+++... + .. +.+... ...--.+.+..+...|++||+..+-
T Consensus 287 d-------~~~~~~~D~v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~~aiI 354 (501)
T TIGR00497 287 E-------WENENGFEVVVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGTAAIV 354 (501)
T ss_pred c-------ccccccCCEEeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCeEEEE
Confidence 1 1123569999999865431 1 00 000000 0111246777888999999987653
No 340
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=75.75 E-value=12 Score=32.79 Aligned_cols=34 Identities=15% Similarity=0.093 Sum_probs=24.6
Q ss_pred HHhhhhhcCc---ccCCCeEEEEcCCCChHHHHHHHH
Q 025715 29 LLQIDEEFNI---FEGVKRVVDLCAAPGSWSQVLSRK 62 (249)
Q Consensus 29 L~ei~~~~~~---~~~g~~vLDLG~gpG~~s~~l~~~ 62 (249)
+-++.+.++- -+...+||==|||-|..+--++.+
T Consensus 41 ~~~L~~~~p~~~~~~~~~~VLVPGsGLGRLa~Eia~~ 77 (270)
T PF07942_consen 41 LDELESLFPPAGSDRSKIRVLVPGSGLGRLAWEIAKL 77 (270)
T ss_pred HHHHHHhhcccccCCCccEEEEcCCCcchHHHHHhhc
Confidence 3455555542 134579999999999999888876
No 341
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=75.32 E-value=23 Score=31.50 Aligned_cols=35 Identities=23% Similarity=0.359 Sum_probs=24.1
Q ss_pred ccCCCeEEEEcCCCChHHHHH---HHHhcCCCCCCCCCCCCCCCeEEEecCCCC
Q 025715 39 FEGVKRVVDLCAAPGSWSQVL---SRKLYLPAKLSPDSREGDLPLIVAIDLQPM 89 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~l---~~~~~~~~~~~~~~~~~~~~~vvavDi~~~ 89 (249)
+++|.+||=.|+ |+....+ ++..+ .+|+++|.++.
T Consensus 164 ~~~g~~VlV~G~--G~vG~~a~~~a~~~G--------------~~vi~~~~~~~ 201 (349)
T TIGR03201 164 LKKGDLVIVIGA--GGVGGYMVQTAKAMG--------------AAVVAIDIDPE 201 (349)
T ss_pred CCCCCEEEEECC--CHHHHHHHHHHHHcC--------------CeEEEEcCCHH
Confidence 467899999997 5555544 44443 57889988763
No 342
>PRK06940 short chain dehydrogenase; Provisional
Probab=75.22 E-value=45 Score=28.60 Aligned_cols=72 Identities=14% Similarity=0.103 Sum_probs=47.4
Q ss_pred eEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC------CC----CCceEeecCCCChhhHHHHHH
Q 025715 44 RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PI----EGVIQVQGDITNARTAEVVIR 113 (249)
Q Consensus 44 ~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~------~~----~~v~~~~gDi~~~~~~~~i~~ 113 (249)
.+|=-|+ |+....+++++. ...+|+.+|.++.. .+ ..+.++..|+++.+....+.+
T Consensus 4 ~~lItGa--~gIG~~la~~l~------------~G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~i~~~~~ 69 (275)
T PRK06940 4 VVVVIGA--GGIGQAIARRVG------------AGKKVLLADYNEENLEAAAKTLREAGFDVSTQEVDVSSRESVKALAA 69 (275)
T ss_pred EEEEECC--ChHHHHHHHHHh------------CCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHH
Confidence 4444453 689999888874 24688888886521 01 135678899999876655544
Q ss_pred hcC-CCcccEEEeCCCC
Q 025715 114 HFD-GCKADLVVCDGAP 129 (249)
Q Consensus 114 ~~~-~~~~DlVlsD~~~ 129 (249)
... .+.+|.++.+...
T Consensus 70 ~~~~~g~id~li~nAG~ 86 (275)
T PRK06940 70 TAQTLGPVTGLVHTAGV 86 (275)
T ss_pred HHHhcCCCCEEEECCCc
Confidence 331 1469999998753
No 343
>PRK11524 putative methyltransferase; Provisional
Probab=75.17 E-value=4.5 Score=35.44 Aligned_cols=35 Identities=14% Similarity=0.033 Sum_probs=28.4
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCC
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM 89 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~ 89 (249)
.+|..|||-.+|+|.-..++. +++ -+.+|+|+++.
T Consensus 207 ~~GD~VLDPF~GSGTT~~AA~-~lg--------------R~~IG~Ei~~~ 241 (284)
T PRK11524 207 NPGDIVLDPFAGSFTTGAVAK-ASG--------------RKFIGIEINSE 241 (284)
T ss_pred CCCCEEEECCCCCcHHHHHHH-HcC--------------CCEEEEeCCHH
Confidence 689999999999999765554 444 68999999973
No 344
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=74.89 E-value=57 Score=28.42 Aligned_cols=63 Identities=21% Similarity=0.306 Sum_probs=42.4
Q ss_pred eEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCCCCCceEeecCCCChhhHHHHHHhcCCCcccEE
Q 025715 44 RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLV 123 (249)
Q Consensus 44 ~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~~~~v~~~~gDi~~~~~~~~i~~~~~~~~~DlV 123 (249)
+||=.| |+|-...++.+++- ..++|+++|.... .+.+|+++.+....+. ...++|+|
T Consensus 2 ~iLVtG-~~GfiGs~l~~~L~------------~~g~V~~~~~~~~-------~~~~Dl~d~~~~~~~~---~~~~~D~V 58 (299)
T PRK09987 2 NILLFG-KTGQVGWELQRALA------------PLGNLIALDVHST-------DYCGDFSNPEGVAETV---RKIRPDVI 58 (299)
T ss_pred eEEEEC-CCCHHHHHHHHHhh------------ccCCEEEeccccc-------cccCCCCCHHHHHHHH---HhcCCCEE
Confidence 455556 78899999888764 2347899886531 3468999987654443 33468999
Q ss_pred EeCCCC
Q 025715 124 VCDGAP 129 (249)
Q Consensus 124 lsD~~~ 129 (249)
+.-.+.
T Consensus 59 ih~Aa~ 64 (299)
T PRK09987 59 VNAAAH 64 (299)
T ss_pred EECCcc
Confidence 876543
No 345
>PRK08219 short chain dehydrogenase; Provisional
Probab=74.87 E-value=44 Score=27.15 Aligned_cols=71 Identities=11% Similarity=0.157 Sum_probs=49.1
Q ss_pred CeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC------CCCCceEeecCCCChhhHHHHHHhcC
Q 025715 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PIEGVIQVQGDITNARTAEVVIRHFD 116 (249)
Q Consensus 43 ~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~------~~~~v~~~~gDi~~~~~~~~i~~~~~ 116 (249)
+++|=.|+ +|+....+++.+-. . .+|++++.++.. ..+++.++++|+.+.+..+.+...+
T Consensus 4 ~~vlVtG~-~g~iG~~l~~~l~~-----------~-~~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~- 69 (227)
T PRK08219 4 PTALITGA-SRGIGAAIARELAP-----------T-HTLLLGGRPAERLDELAAELPGATPFPVDLTDPEAIAAAVEQL- 69 (227)
T ss_pred CEEEEecC-CcHHHHHHHHHHHh-----------h-CCEEEEeCCHHHHHHHHHHhccceEEecCCCCHHHHHHHHHhc-
Confidence 46777776 57888887776641 3 678999887522 1246778899999987666555443
Q ss_pred CCcccEEEeCCC
Q 025715 117 GCKADLVVCDGA 128 (249)
Q Consensus 117 ~~~~DlVlsD~~ 128 (249)
+..|.|+....
T Consensus 70 -~~id~vi~~ag 80 (227)
T PRK08219 70 -GRLDVLVHNAG 80 (227)
T ss_pred -CCCCEEEECCC
Confidence 26899988754
No 346
>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional
Probab=74.71 E-value=52 Score=27.92 Aligned_cols=78 Identities=8% Similarity=-0.049 Sum_probs=49.5
Q ss_pred CCCeEEEEcC-CCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCC---C--C----CCCCceEeecCCCChhhHHH
Q 025715 41 GVKRVVDLCA-APGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQP---M--A----PIEGVIQVQGDITNARTAEV 110 (249)
Q Consensus 41 ~g~~vLDLG~-gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~---~--~----~~~~v~~~~gDi~~~~~~~~ 110 (249)
.++++|=.|+ |+++....+++++.. ...+|+.++... . . .......+..|+++.+..+.
T Consensus 5 ~~k~vlItGas~~~GIG~a~a~~l~~-----------~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~ 73 (260)
T PRK06997 5 AGKRILITGLLSNRSIAYGIAKACKR-----------EGAELAFTYVGDRFKDRITEFAAEFGSDLVFPCDVASDEQIDA 73 (260)
T ss_pred CCcEEEEeCCCCCCcHHHHHHHHHHH-----------CCCeEEEEccchHHHHHHHHHHHhcCCcceeeccCCCHHHHHH
Confidence 3568888888 588888888887742 235676655321 0 0 11223357889999876655
Q ss_pred HHHhcC--CCcccEEEeCCCC
Q 025715 111 VIRHFD--GCKADLVVCDGAP 129 (249)
Q Consensus 111 i~~~~~--~~~~DlVlsD~~~ 129 (249)
+.+... -+.+|+++.+...
T Consensus 74 ~~~~~~~~~g~iD~lvnnAG~ 94 (260)
T PRK06997 74 LFASLGQHWDGLDGLVHSIGF 94 (260)
T ss_pred HHHHHHHHhCCCcEEEEcccc
Confidence 544322 1579999998743
No 347
>TIGR01472 gmd GDP-mannose 4,6-dehydratase. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).
Probab=74.58 E-value=45 Score=29.50 Aligned_cols=66 Identities=14% Similarity=0.035 Sum_probs=44.3
Q ss_pred CCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-------C---------CCCceEeecCCCChhhHHHHHH
Q 025715 50 AAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-------P---------IEGVIQVQGDITNARTAEVVIR 113 (249)
Q Consensus 50 ~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-------~---------~~~v~~~~gDi~~~~~~~~i~~ 113 (249)
-|+|....++++++-. .+.+|+++|..+.. . -.+++++.+|+++.+.+..+.+
T Consensus 7 GatGfIG~~l~~~L~~-----------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~ 75 (343)
T TIGR01472 7 GITGQDGSYLAEFLLE-----------KGYEVHGLIRRSSSFNTQRIEHIYEDPHNVNKARMKLHYGDLTDSSNLRRIID 75 (343)
T ss_pred cCCCcHHHHHHHHHHH-----------CCCEEEEEecCCcccchhhhhhhhhccccccccceeEEEeccCCHHHHHHHHH
Confidence 3678899988887642 23589999876421 0 0247788999999876544433
Q ss_pred hcCCCcccEEEeCCCC
Q 025715 114 HFDGCKADLVVCDGAP 129 (249)
Q Consensus 114 ~~~~~~~DlVlsD~~~ 129 (249)
...+|.|+.-.+.
T Consensus 76 ---~~~~d~ViH~Aa~ 88 (343)
T TIGR01472 76 ---EIKPTEIYNLAAQ 88 (343)
T ss_pred ---hCCCCEEEECCcc
Confidence 2358999887754
No 348
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=74.50 E-value=19 Score=31.00 Aligned_cols=95 Identities=17% Similarity=0.034 Sum_probs=45.1
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhhHH
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTAE 109 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~~~ 109 (249)
.|.++|-+| =.-.+..+....+ ...+|+.+|+.+-. .++ ++.+..|+.++
T Consensus 44 ~gk~il~lG--DDDLtSlA~al~~------------~~~~I~VvDiDeRll~fI~~~a~~~gl~-i~~~~~DlR~~---- 104 (243)
T PF01861_consen 44 EGKRILFLG--DDDLTSLALALTG------------LPKRITVVDIDERLLDFINRVAEEEGLP-IEAVHYDLRDP---- 104 (243)
T ss_dssp TT-EEEEES---TT-HHHHHHHHT--------------SEEEEE-S-HHHHHHHHHHHHHHT---EEEE---TTS-----
T ss_pred cCCEEEEEc--CCcHHHHHHHhhC------------CCCeEEEEEcCHHHHHHHHHHHHHcCCc-eEEEEeccccc----
Confidence 468998888 3444443333333 24689999998721 123 77888899885
Q ss_pred HHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEe
Q 025715 110 VVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (249)
Q Consensus 110 ~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~ 168 (249)
+.+.+. ++||+++.|++- + . ..+. -.+..+...||.-|..+.-.+
T Consensus 105 -LP~~~~-~~fD~f~TDPPy--T----~---~G~~---LFlsRgi~~Lk~~g~~gy~~~ 149 (243)
T PF01861_consen 105 -LPEELR-GKFDVFFTDPPY--T----P---EGLK---LFLSRGIEALKGEGCAGYFGF 149 (243)
T ss_dssp ---TTTS-S-BSEEEE---S--S----H---HHHH---HHHHHHHHTB-STT-EEEEEE
T ss_pred -CCHHHh-cCCCEEEeCCCC--C----H---HHHH---HHHHHHHHHhCCCCceEEEEE
Confidence 222333 689999999741 1 1 1222 346677788887775544344
No 349
>PF01358 PARP_regulatory: Poly A polymerase regulatory subunit; InterPro: IPR000176 This family contains viral proteins that are bifunctional, acting as both an mRNA cap-specific RNA 2'-O-methyltransferase, which methylates the ribose 2' OH group of the first transcribed nucleotide, thereby producing a 2'-o-methylpurine cap and a poly(A) polymerase processivity factor which binds to Poly(A) but has no catalytic activity. The structure of this protein is known [].; GO: 0004483 mRNA (nucleoside-2'-O-)-methyltransferase activity, 0006370 mRNA capping, 0006397 mRNA processing; PDB: 4DCG_A 1B42_A 3ERC_A 1AV6_A 2VP3_A 1JTF_A 1JTE_A 1VP3_A 3ER9_A 1P39_A ....
Probab=74.47 E-value=37 Score=30.05 Aligned_cols=104 Identities=17% Similarity=0.146 Sum_probs=50.2
Q ss_pred CeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC----CCCCceEeecCCCChhhHHHHHHhcCCC
Q 025715 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----PIEGVIQVQGDITNARTAEVVIRHFDGC 118 (249)
Q Consensus 43 ~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~----~~~~v~~~~gDi~~~~~~~~i~~~~~~~ 118 (249)
..||=+|+|||.-..+|.+...... -.-+.+.+|..+.. .+++|+.++ +..+.+....+.+...
T Consensus 60 ~~VVYiGsApG~Hi~~L~~lf~~~~---------~~i~wvLiDp~~f~~~l~~l~~v~l~~-~fftee~~~~~~~~~~-- 127 (294)
T PF01358_consen 60 VTVVYIGSAPGTHIPFLFDLFPDLK---------VPIKWVLIDPRPFCISLEELSNVTLIQ-RFFTEEYARRLRDKLN-- 127 (294)
T ss_dssp EEEEEES-SS-HHHHHHHHHHHHTT-----------EEEEEEESS---GGGTT-TTEEEEE-S---HHHHHHHHHHHT--
T ss_pred eEEEEecCCCcchHHHHHHHHHhcC---------CceEEEEECCcchhhhhcccCcEEeeh-hhCCHHHHHHHHhhcC--
Confidence 6899999999999999998775110 01358899999864 356777665 4445444444444322
Q ss_pred cccEE-EeCCCCCCCCCCCcCHHHHHHHH--HHHHHHHHHhccCCCEEE
Q 025715 119 KADLV-VCDGAPDVTGLHDMDEFVQSQLI--LAGLTVVTHVLKEGGKFI 164 (249)
Q Consensus 119 ~~DlV-lsD~~~~~~g~~~~~~~~~~~l~--~~~l~~a~~~Lk~gG~lv 164 (249)
. |++ +||.... .+ +.+ ....++ .++-......|+|--.+.
T Consensus 128 ~-~illISDIRS~-~~--~ep--~t~~ll~Dy~lQn~w~~~LkP~as~L 170 (294)
T PF01358_consen 128 L-KILLISDIRSG-DP--NEP--NTKDLLRDYALQNSWVSILKPVASML 170 (294)
T ss_dssp T-EEEEEE-----------S----HHHHHHHHHHHHHHHHHH--SEEEE
T ss_pred C-CeEEEEecccC-CC--CCc--cHHHHHHHHHHHHHHHHHHhHHHHHh
Confidence 2 555 7886311 11 111 112222 223345577899986554
No 350
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=74.36 E-value=3.4 Score=30.47 Aligned_cols=90 Identities=26% Similarity=0.217 Sum_probs=56.4
Q ss_pred CCCChHHHHHHHHhcCCCCCCCCCCCCCCC-eEEEecCCCCC----CCCCceEeecCCCChhhHHHHHHhcCCCcccEEE
Q 025715 50 AAPGSWSQVLSRKLYLPAKLSPDSREGDLP-LIVAIDLQPMA----PIEGVIQVQGDITNARTAEVVIRHFDGCKADLVV 124 (249)
Q Consensus 50 ~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~-~vvavDi~~~~----~~~~v~~~~gDi~~~~~~~~i~~~~~~~~~DlVl 124 (249)
||.|.++..+++.+. ..+ .|+.+|.++.. .-.++.++.||.++.+.+++ ..-.++|.|+
T Consensus 4 ~G~g~~~~~i~~~L~------------~~~~~vvvid~d~~~~~~~~~~~~~~i~gd~~~~~~l~~----a~i~~a~~vv 67 (116)
T PF02254_consen 4 IGYGRIGREIAEQLK------------EGGIDVVVIDRDPERVEELREEGVEVIYGDATDPEVLER----AGIEKADAVV 67 (116)
T ss_dssp ES-SHHHHHHHHHHH------------HTTSEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHH----TTGGCESEEE
T ss_pred EcCCHHHHHHHHHHH------------hCCCEEEEEECCcHHHHHHHhcccccccccchhhhHHhh----cCccccCEEE
Confidence 567888888888775 234 79999998743 12468899999999876543 2345788888
Q ss_pred eCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEec
Q 025715 125 CDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFR 169 (249)
Q Consensus 125 sD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~ 169 (249)
+... .++. .. .+....+-+-|...++.++..
T Consensus 68 ~~~~--------~d~~-n~-----~~~~~~r~~~~~~~ii~~~~~ 98 (116)
T PF02254_consen 68 ILTD--------DDEE-NL-----LIALLARELNPDIRIIARVND 98 (116)
T ss_dssp EESS--------SHHH-HH-----HHHHHHHHHTTTSEEEEEESS
T ss_pred EccC--------CHHH-HH-----HHHHHHHHHCCCCeEEEEECC
Confidence 7532 1211 11 222334566777888876543
No 351
>PRK06953 short chain dehydrogenase; Provisional
Probab=74.17 E-value=47 Score=27.19 Aligned_cols=73 Identities=16% Similarity=0.140 Sum_probs=49.4
Q ss_pred eEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC--CC--CCceEeecCCCChhhHHHHHHhcCCCc
Q 025715 44 RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--PI--EGVIQVQGDITNARTAEVVIRHFDGCK 119 (249)
Q Consensus 44 ~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~--~~--~~v~~~~gDi~~~~~~~~i~~~~~~~~ 119 (249)
++|=.|+ +|++...+++.+.. ...+|+.++.++.. .+ .+++++.+|+++.+..+.+...+....
T Consensus 3 ~vlvtG~-sg~iG~~la~~L~~-----------~G~~v~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 70 (222)
T PRK06953 3 TVLIVGA-SRGIGREFVRQYRA-----------DGWRVIATARDAAALAALQALGAEALALDVADPASVAGLAWKLDGEA 70 (222)
T ss_pred eEEEEcC-CCchhHHHHHHHHh-----------CCCEEEEEECCHHHHHHHHhccceEEEecCCCHHHHHHHHHHhcCCC
Confidence 5665565 57888887776642 24588888877532 11 245678999999887666655555457
Q ss_pred ccEEEeCCC
Q 025715 120 ADLVVCDGA 128 (249)
Q Consensus 120 ~DlVlsD~~ 128 (249)
+|+|+....
T Consensus 71 ~d~vi~~ag 79 (222)
T PRK06953 71 LDAAVYVAG 79 (222)
T ss_pred CCEEEECCC
Confidence 999998864
No 352
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=73.83 E-value=19 Score=35.49 Aligned_cols=108 Identities=13% Similarity=0.144 Sum_probs=59.8
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC---------------------------CC
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP---------------------------IE 93 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~---------------------------~~ 93 (249)
+..+|+|+|-|+|--...+.+.........+ ......-++++++..|+.. .+
T Consensus 57 ~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~-~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 135 (662)
T PRK01747 57 RRFVIAETGFGTGLNFLATWQAFDQFRQRHP-PARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLP 135 (662)
T ss_pred CcEEEEecCcchHHHHHHHHHHHHHhhhhCC-CCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCC
Confidence 3479999999999977766544310000000 0000134889999876320 12
Q ss_pred Cc------------eEeecCCCChhhHHHHHHhcCCCcccEEEeCCC-CCCCCCCCcCHHHHHHHHHHHHHHHHHhccCC
Q 025715 94 GV------------IQVQGDITNARTAEVVIRHFDGCKADLVVCDGA-PDVTGLHDMDEFVQSQLILAGLTVVTHVLKEG 160 (249)
Q Consensus 94 ~v------------~~~~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~-~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~g 160 (249)
+. +...||+.+ ....+. ..+|+++.|+. |.. |.+-+ ....+....++++||
T Consensus 136 g~~~~~~~~~~~~l~l~~gd~~~------~~~~~~-~~~d~~~lD~FsP~~----np~~W-----~~~~~~~l~~~~~~~ 199 (662)
T PRK01747 136 GCHRLLFDDGRVTLDLWFGDANE------LLPQLD-ARADAWFLDGFAPAK----NPDMW-----SPNLFNALARLARPG 199 (662)
T ss_pred CceEEEecCCcEEEEEEecCHHH------HHHhcc-ccccEEEeCCCCCcc----Chhhc-----cHHHHHHHHHHhCCC
Confidence 21 233455543 122233 46999999983 321 21111 124677788899999
Q ss_pred CEEEE
Q 025715 161 GKFIA 165 (249)
Q Consensus 161 G~lv~ 165 (249)
|+|+.
T Consensus 200 ~~~~t 204 (662)
T PRK01747 200 ATLAT 204 (662)
T ss_pred CEEEE
Confidence 99884
No 353
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=73.67 E-value=3.9 Score=35.36 Aligned_cols=40 Identities=13% Similarity=0.114 Sum_probs=25.4
Q ss_pred cCcccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCC
Q 025715 36 FNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQP 88 (249)
Q Consensus 36 ~~~~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~ 88 (249)
|+.+.+..+|+|||||-==++..+.... ++..++|.||+.
T Consensus 100 f~~~~~p~sVlDigCGlNPlalp~~~~~-------------~~a~Y~a~DID~ 139 (251)
T PF07091_consen 100 FGRIPPPDSVLDIGCGLNPLALPWMPEA-------------PGATYIAYDIDS 139 (251)
T ss_dssp CCCS---SEEEEET-TTCHHHHHTTTSS-------------TT-EEEEEESBH
T ss_pred HhcCCCCchhhhhhccCCceehhhcccC-------------CCcEEEEEeCCH
Confidence 3334557899999999877766554322 357999999987
No 354
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=73.30 E-value=9.4 Score=36.62 Aligned_cols=95 Identities=17% Similarity=0.145 Sum_probs=63.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC----------C-CCceEeecCCCChhhHHH
Q 025715 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----------I-EGVIQVQGDITNARTAEV 110 (249)
Q Consensus 42 g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~----------~-~~v~~~~gDi~~~~~~~~ 110 (249)
...+.=+|+|.|-......+...+. ....+++||+-+|.+. . ..|+.+.+|++....
T Consensus 368 ~tVimvlGaGRGPLv~~~lkaa~~~---------~RkVklyavEKNPNAivtL~~~n~~~W~~~Vtii~~DMR~w~a--- 435 (649)
T KOG0822|consen 368 TTVIMVLGAGRGPLVDASLKAAEET---------DRKVKLYAVEKNPNAIVTLQNRNFECWDNRVTIISSDMRKWNA--- 435 (649)
T ss_pred eEEEEEecCCCccHHHHHHHHHHHh---------cCceEEEEEecCcchhhhhhhhchhhhcCeeEEEeccccccCC---
Confidence 3568889999999888765533211 1346899999999652 1 358889999988652
Q ss_pred HHHhcCCCcccEEEeCC--CCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEE
Q 025715 111 VIRHFDGCKADLVVCDG--APDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFI 164 (249)
Q Consensus 111 i~~~~~~~~~DlVlsD~--~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv 164 (249)
+.++.|+++|-. ++. .-...+ .-|.-|.+.|||.|..+
T Consensus 436 -----p~eq~DI~VSELLGSFG---DNELSP--------ECLDG~q~fLkpdgIsI 475 (649)
T KOG0822|consen 436 -----PREQADIIVSELLGSFG---DNELSP--------ECLDGAQKFLKPDGISI 475 (649)
T ss_pred -----chhhccchHHHhhcccc---CccCCH--------HHHHHHHhhcCCCceEc
Confidence 136789998864 221 111111 24667889999998766
No 355
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=73.24 E-value=26 Score=31.49 Aligned_cols=92 Identities=15% Similarity=0.012 Sum_probs=48.5
Q ss_pred ccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC--C---CCceEeecCCCChhhHHHHHH
Q 025715 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP--I---EGVIQVQGDITNARTAEVVIR 113 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~--~---~~v~~~~gDi~~~~~~~~i~~ 113 (249)
+++|.+||=.|+ |+..+.+.+.... ...+|++++.++.+. . -|+..+- |..+.+ .+.+
T Consensus 181 ~~~g~~VlV~G~--G~vG~~avq~Ak~-----------~Ga~vi~~~~~~~~~~~~~~~~Ga~~vi-~~~~~~---~~~~ 243 (360)
T PLN02586 181 TEPGKHLGVAGL--GGLGHVAVKIGKA-----------FGLKVTVISSSSNKEDEAINRLGADSFL-VSTDPE---KMKA 243 (360)
T ss_pred cCCCCEEEEECC--CHHHHHHHHHHHH-----------CCCEEEEEeCCcchhhhHHHhCCCcEEE-cCCCHH---HHHh
Confidence 467888888775 5666654332210 125688877765321 1 1332111 112211 2222
Q ss_pred hcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEE
Q 025715 114 HFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (249)
Q Consensus 114 ~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k 166 (249)
.. +.+|+|+- +.|. . ..+..+.++|++||++++-
T Consensus 244 ~~--~~~D~vid-----~~g~---~---------~~~~~~~~~l~~~G~iv~v 277 (360)
T PLN02586 244 AI--GTMDYIID-----TVSA---V---------HALGPLLGLLKVNGKLITL 277 (360)
T ss_pred hc--CCCCEEEE-----CCCC---H---------HHHHHHHHHhcCCcEEEEe
Confidence 22 25898883 2221 0 2456678899999999863
No 356
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=73.14 E-value=35 Score=29.92 Aligned_cols=93 Identities=20% Similarity=0.258 Sum_probs=50.1
Q ss_pred ccCCCeEEEEcCCCChHHHHH---HHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC--C--CCc-eEeecCCCChhhHHH
Q 025715 39 FEGVKRVVDLCAAPGSWSQVL---SRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP--I--EGV-IQVQGDITNARTAEV 110 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~l---~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~--~--~~v-~~~~gDi~~~~~~~~ 110 (249)
++++.+||-.|+ |+..+.+ ++..+ ...|++++.++.+. . .+. .++ +..+......
T Consensus 165 ~~~~~~VlI~g~--g~vg~~~iqlak~~g-------------~~~v~~~~~~~~~~~~~~~~g~~~vi--~~~~~~~~~~ 227 (347)
T cd05278 165 IKPGSTVAVIGA--GPVGLCAVAGARLLG-------------AARIIAVDSNPERLDLAKEAGATDII--NPKNGDIVEQ 227 (347)
T ss_pred CCCCCEEEEECC--CHHHHHHHHHHHHcC-------------CCEEEEEeCCHHHHHHHHHhCCcEEE--cCCcchHHHH
Confidence 367889999654 5555544 44432 13677886655321 0 121 112 2222222233
Q ss_pred HHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEE
Q 025715 111 VIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIA 165 (249)
Q Consensus 111 i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~ 165 (249)
+.+...++.+|+|+... |. . ..+..+.+.|+++|+++.
T Consensus 228 i~~~~~~~~~d~vld~~-----g~---~---------~~~~~~~~~l~~~G~~v~ 265 (347)
T cd05278 228 ILELTGGRGVDCVIEAV-----GF---E---------ETFEQAVKVVRPGGTIAN 265 (347)
T ss_pred HHHHcCCCCCcEEEEcc-----CC---H---------HHHHHHHHHhhcCCEEEE
Confidence 44334446799998521 11 0 245667889999999885
No 357
>PRK06182 short chain dehydrogenase; Validated
Probab=72.80 E-value=19 Score=30.73 Aligned_cols=76 Identities=13% Similarity=0.106 Sum_probs=50.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC--C--CCCceEeecCCCChhhHHHHHHhc--
Q 025715 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--P--IEGVIQVQGDITNARTAEVVIRHF-- 115 (249)
Q Consensus 42 g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~--~--~~~v~~~~gDi~~~~~~~~i~~~~-- 115 (249)
+.++|=.| |+|+....+++.+.. .+.+|++++.++.. . -.++.++.+|+++.+..+.+.+.+
T Consensus 3 ~k~vlItG-asggiG~~la~~l~~-----------~G~~V~~~~r~~~~l~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~ 70 (273)
T PRK06182 3 KKVALVTG-ASSGIGKATARRLAA-----------QGYTVYGAARRVDKMEDLASLGVHPLSLDVTDEASIKAAVDTIIA 70 (273)
T ss_pred CCEEEEEC-CCChHHHHHHHHHHH-----------CCCEEEEEeCCHHHHHHHHhCCCeEEEeeCCCHHHHHHHHHHHHH
Confidence 45677666 567788888877642 24588888877532 1 135778899999987665544332
Q ss_pred CCCcccEEEeCCCC
Q 025715 116 DGCKADLVVCDGAP 129 (249)
Q Consensus 116 ~~~~~DlVlsD~~~ 129 (249)
..+.+|.|+.+...
T Consensus 71 ~~~~id~li~~ag~ 84 (273)
T PRK06182 71 EEGRIDVLVNNAGY 84 (273)
T ss_pred hcCCCCEEEECCCc
Confidence 12479999998754
No 358
>PRK08324 short chain dehydrogenase; Validated
Probab=72.59 E-value=27 Score=34.53 Aligned_cols=77 Identities=18% Similarity=0.215 Sum_probs=49.9
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC------C---CCceEeecCCCChhhHHHH
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP------I---EGVIQVQGDITNARTAEVV 111 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~------~---~~v~~~~gDi~~~~~~~~i 111 (249)
+|+++|=.|+ +|+....+++.+.. .+.+|+.+|.++... + .++.++.+|+++.+....+
T Consensus 421 ~gk~vLVTGa-sggIG~~la~~L~~-----------~Ga~Vvl~~r~~~~~~~~~~~l~~~~~v~~v~~Dvtd~~~v~~~ 488 (681)
T PRK08324 421 AGKVALVTGA-AGGIGKATAKRLAA-----------EGACVVLADLDEEAAEAAAAELGGPDRALGVACDVTDEAAVQAA 488 (681)
T ss_pred CCCEEEEecC-CCHHHHHHHHHHHH-----------CcCEEEEEeCCHHHHHHHHHHHhccCcEEEEEecCCCHHHHHHH
Confidence 3577887775 56777777766541 235899999876321 1 2567889999998765544
Q ss_pred HHhcC--CCcccEEEeCCCC
Q 025715 112 IRHFD--GCKADLVVCDGAP 129 (249)
Q Consensus 112 ~~~~~--~~~~DlVlsD~~~ 129 (249)
.+... .+.+|+|+.+...
T Consensus 489 ~~~~~~~~g~iDvvI~~AG~ 508 (681)
T PRK08324 489 FEEAALAFGGVDIVVSNAGI 508 (681)
T ss_pred HHHHHHHcCCCCEEEECCCC
Confidence 33221 1469999988653
No 359
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=72.48 E-value=59 Score=28.98 Aligned_cols=72 Identities=19% Similarity=0.174 Sum_probs=48.6
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC---------------CCCCceEeecCCCCh
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------------PIEGVIQVQGDITNA 105 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~---------------~~~~v~~~~gDi~~~ 105 (249)
.+++||=.| |+|....++.+++-. .+.+|+++|..... ...+++++.+|+++.
T Consensus 14 ~~~~vlVtG-atGfiG~~lv~~L~~-----------~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~ 81 (348)
T PRK15181 14 APKRWLITG-VAGFIGSGLLEELLF-----------LNQTVIGLDNFSTGYQHNLDDVRTSVSEEQWSRFIFIQGDIRKF 81 (348)
T ss_pred cCCEEEEEC-CccHHHHHHHHHHHH-----------CCCEEEEEeCCCCcchhhhhhhhhccccccCCceEEEEccCCCH
Confidence 446888777 789999988887641 23589999975421 013567889999987
Q ss_pred hhHHHHHHhcCCCcccEEEeCCCC
Q 025715 106 RTAEVVIRHFDGCKADLVVCDGAP 129 (249)
Q Consensus 106 ~~~~~i~~~~~~~~~DlVlsD~~~ 129 (249)
.....+. . .+|.|+.-++.
T Consensus 82 ~~l~~~~---~--~~d~ViHlAa~ 100 (348)
T PRK15181 82 TDCQKAC---K--NVDYVLHQAAL 100 (348)
T ss_pred HHHHHHh---h--CCCEEEECccc
Confidence 6544332 3 48999887653
No 360
>PLN02240 UDP-glucose 4-epimerase
Probab=72.48 E-value=68 Score=28.27 Aligned_cols=72 Identities=15% Similarity=0.091 Sum_probs=47.8
Q ss_pred CCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC--------------CCCCceEeecCCCChhh
Q 025715 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--------------PIEGVIQVQGDITNART 107 (249)
Q Consensus 42 g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~--------------~~~~v~~~~gDi~~~~~ 107 (249)
+++||=.| |+|....++++.+.. ....|+++|..... ...++.++.+|+++.+.
T Consensus 5 ~~~vlItG-atG~iG~~l~~~L~~-----------~g~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~ 72 (352)
T PLN02240 5 GRTILVTG-GAGYIGSHTVLQLLL-----------AGYKVVVIDNLDNSSEEALRRVKELAGDLGDNLVFHKVDLRDKEA 72 (352)
T ss_pred CCEEEEEC-CCChHHHHHHHHHHH-----------CCCEEEEEeCCCcchHHHHHHHHHhhcccCccceEEecCcCCHHH
Confidence 46788777 778888888876642 23588998864311 01357788999999876
Q ss_pred HHHHHHhcCCCcccEEEeCCC
Q 025715 108 AEVVIRHFDGCKADLVVCDGA 128 (249)
Q Consensus 108 ~~~i~~~~~~~~~DlVlsD~~ 128 (249)
...+.+ ...+|.|+...+
T Consensus 73 l~~~~~---~~~~d~vih~a~ 90 (352)
T PLN02240 73 LEKVFA---STRFDAVIHFAG 90 (352)
T ss_pred HHHHHH---hCCCCEEEEccc
Confidence 544432 236899988654
No 361
>PRK06181 short chain dehydrogenase; Provisional
Probab=72.16 E-value=58 Score=27.32 Aligned_cols=74 Identities=18% Similarity=0.102 Sum_probs=47.7
Q ss_pred CeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC---------C-CCCceEeecCCCChhhHHHHH
Q 025715 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------P-IEGVIQVQGDITNARTAEVVI 112 (249)
Q Consensus 43 ~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~---------~-~~~v~~~~gDi~~~~~~~~i~ 112 (249)
.+||=.| |+|+....+++.+.. .+.+|++++.++.. . -.++.++.+|+.+.+....+.
T Consensus 2 ~~vlVtG-asg~iG~~la~~l~~-----------~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~ 69 (263)
T PRK06181 2 KVVIITG-ASEGIGRALAVRLAR-----------AGAQLVLAARNETRLASLAQELADHGGEALVVPTDVSDAEACERLI 69 (263)
T ss_pred CEEEEec-CCcHHHHHHHHHHHH-----------CCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHH
Confidence 3566555 667888887776531 24689999887521 0 124667889999987655544
Q ss_pred HhcC--CCcccEEEeCCC
Q 025715 113 RHFD--GCKADLVVCDGA 128 (249)
Q Consensus 113 ~~~~--~~~~DlVlsD~~ 128 (249)
+... -+.+|.|+....
T Consensus 70 ~~~~~~~~~id~vi~~ag 87 (263)
T PRK06181 70 EAAVARFGGIDILVNNAG 87 (263)
T ss_pred HHHHHHcCCCCEEEECCC
Confidence 3321 136899998864
No 362
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=72.02 E-value=27 Score=30.78 Aligned_cols=95 Identities=15% Similarity=0.085 Sum_probs=51.6
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCe-EEEecCCCCCC--C--CCceEeecCCCChhhHHHHHHh
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPL-IVAIDLQPMAP--I--EGVIQVQGDITNARTAEVVIRH 114 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~-vvavDi~~~~~--~--~~v~~~~gDi~~~~~~~~i~~~ 114 (249)
++|.+||=+|+ |+....+.+.... ...+ |++++.++.+. . -++..+ -|..+.+ .+.+.+.
T Consensus 162 ~~g~~vlV~G~--G~vG~~~~~~ak~-----------~G~~~vi~~~~~~~~~~~~~~~ga~~~-i~~~~~~-~~~~~~~ 226 (339)
T cd08239 162 SGRDTVLVVGA--GPVGLGALMLARA-----------LGAEDVIGVDPSPERLELAKALGADFV-INSGQDD-VQEIREL 226 (339)
T ss_pred CCCCEEEEECC--CHHHHHHHHHHHH-----------cCCCEEEEECCCHHHHHHHHHhCCCEE-EcCCcch-HHHHHHH
Confidence 57889988865 6666654433211 1245 88888775321 0 122111 1222222 3334333
Q ss_pred cCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEE
Q 025715 115 FDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (249)
Q Consensus 115 ~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k 166 (249)
..+..+|+|+-- .|. ...+..+.+.|+++|++++-
T Consensus 227 ~~~~~~d~vid~-----~g~------------~~~~~~~~~~l~~~G~~v~~ 261 (339)
T cd08239 227 TSGAGADVAIEC-----SGN------------TAARRLALEAVRPWGRLVLV 261 (339)
T ss_pred hCCCCCCEEEEC-----CCC------------HHHHHHHHHHhhcCCEEEEE
Confidence 344579999842 221 02345678899999999863
No 363
>PLN02740 Alcohol dehydrogenase-like
Probab=71.96 E-value=36 Score=30.77 Aligned_cols=95 Identities=13% Similarity=0.077 Sum_probs=51.3
Q ss_pred ccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCC-eEEEecCCCCCC--C--CCce-EeecCCCCh--hhHHH
Q 025715 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLP-LIVAIDLQPMAP--I--EGVI-QVQGDITNA--RTAEV 110 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~-~vvavDi~~~~~--~--~~v~-~~~gDi~~~--~~~~~ 110 (249)
+++|.+||=.|+ |+....+.+.... ... +|+++|.++.+. . -+.. ++ |..+. +..+.
T Consensus 196 ~~~g~~VlV~G~--G~vG~~a~q~ak~-----------~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i--~~~~~~~~~~~~ 260 (381)
T PLN02740 196 VQAGSSVAIFGL--GAVGLAVAEGARA-----------RGASKIIGVDINPEKFEKGKEMGITDFI--NPKDSDKPVHER 260 (381)
T ss_pred CCCCCEEEEECC--CHHHHHHHHHHHH-----------CCCCcEEEEcCChHHHHHHHHcCCcEEE--ecccccchHHHH
Confidence 367889998875 6666655443221 124 689999876431 0 1221 22 22221 12223
Q ss_pred HHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCC-CEEEEE
Q 025715 111 VIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEG-GKFIAK 166 (249)
Q Consensus 111 i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~g-G~lv~k 166 (249)
+.+... +.+|+|+- +.|.. ..+..+...+++| |++++.
T Consensus 261 v~~~~~-~g~dvvid-----~~G~~------------~~~~~a~~~~~~g~G~~v~~ 299 (381)
T PLN02740 261 IREMTG-GGVDYSFE-----CAGNV------------EVLREAFLSTHDGWGLTVLL 299 (381)
T ss_pred HHHHhC-CCCCEEEE-----CCCCh------------HHHHHHHHhhhcCCCEEEEE
Confidence 333223 36999884 23310 2456677888897 998763
No 364
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=71.76 E-value=1.6 Score=38.73 Aligned_cols=85 Identities=22% Similarity=0.221 Sum_probs=53.3
Q ss_pred cCCCeEEEEcCCCChHHH-HHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC--C------CCc----eEeecCCCChh
Q 025715 40 EGVKRVVDLCAAPGSWSQ-VLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP--I------EGV----IQVQGDITNAR 106 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~-~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~--~------~~v----~~~~gDi~~~~ 106 (249)
-.|..|+||=||-|.|+. .+.+. + ...|+|+|++|... + .+| ..+.||-..+.
T Consensus 193 c~~eviVDLYAGIGYFTlpflV~a-g-------------Ak~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~ 258 (351)
T KOG1227|consen 193 CDGEVIVDLYAGIGYFTLPFLVTA-G-------------AKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPK 258 (351)
T ss_pred cccchhhhhhcccceEEeehhhcc-C-------------ccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccC
Confidence 356899999999999998 44432 2 46899999999541 1 111 22334433321
Q ss_pred hHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCE
Q 025715 107 TAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGK 162 (249)
Q Consensus 107 ~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~ 162 (249)
.....|.|..-+-|+..+.| -.|.++|||.|-
T Consensus 259 ---------~~~~AdrVnLGLlPSse~~W---------------~~A~k~Lk~egg 290 (351)
T KOG1227|consen 259 ---------PRLRADRVNLGLLPSSEQGW---------------PTAIKALKPEGG 290 (351)
T ss_pred ---------ccccchheeeccccccccch---------------HHHHHHhhhcCC
Confidence 23567888776666554322 357788888654
No 365
>PLN02572 UDP-sulfoquinovose synthase
Probab=71.24 E-value=66 Score=30.05 Aligned_cols=72 Identities=18% Similarity=0.104 Sum_probs=47.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC------------C---------------CCC
Q 025715 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------------P---------------IEG 94 (249)
Q Consensus 42 g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~------------~---------------~~~ 94 (249)
+++||=.| |+|....++++++-. .+..|+++|..... + -.+
T Consensus 47 ~k~VLVTG-atGfIGs~Lv~~L~~-----------~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 114 (442)
T PLN02572 47 KKKVMVIG-GDGYCGWATALHLSK-----------RGYEVAIVDNLCRRLFDHQLGLDSLTPIASIHERVRRWKEVSGKE 114 (442)
T ss_pred CCEEEEEC-CCcHHHHHHHHHHHH-----------CCCeEEEEeccccccccccccccccccccchHHHHHHHHHhhCCc
Confidence 46777665 789999998887742 23588888742110 0 025
Q ss_pred ceEeecCCCChhhHHHHHHhcCCCcccEEEeCCC
Q 025715 95 VIQVQGDITNARTAEVVIRHFDGCKADLVVCDGA 128 (249)
Q Consensus 95 v~~~~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~ 128 (249)
++++.+|+.+.+....+.+ ...+|.|+.-+.
T Consensus 115 v~~v~~Dl~d~~~v~~~l~---~~~~D~ViHlAa 145 (442)
T PLN02572 115 IELYVGDICDFEFLSEAFK---SFEPDAVVHFGE 145 (442)
T ss_pred ceEEECCCCCHHHHHHHHH---hCCCCEEEECCC
Confidence 7789999999866554443 236899998664
No 366
>PRK06523 short chain dehydrogenase; Provisional
Probab=71.00 E-value=61 Score=27.11 Aligned_cols=76 Identities=20% Similarity=0.094 Sum_probs=50.6
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCCC-CCceEeecCCCChhhHHHHHHhcC--C
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPI-EGVIQVQGDITNARTAEVVIRHFD--G 117 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~~-~~v~~~~gDi~~~~~~~~i~~~~~--~ 117 (249)
.++++|-.|+ +|+....+++.+.. .+.+|++++.++.... .++.++++|+.+.+....+.+.+. .
T Consensus 8 ~~k~vlItGa-s~gIG~~ia~~l~~-----------~G~~v~~~~r~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 75 (260)
T PRK06523 8 AGKRALVTGG-TKGIGAATVARLLE-----------AGARVVTTARSRPDDLPEGVEFVAADLTTAEGCAAVARAVLERL 75 (260)
T ss_pred CCCEEEEECC-CCchhHHHHHHHHH-----------CCCEEEEEeCChhhhcCCceeEEecCCCCHHHHHHHHHHHHHHc
Confidence 4678888885 56677777766542 2368888888764433 346788999999876554433221 1
Q ss_pred CcccEEEeCCC
Q 025715 118 CKADLVVCDGA 128 (249)
Q Consensus 118 ~~~DlVlsD~~ 128 (249)
+.+|.|+.+..
T Consensus 76 ~~id~vi~~ag 86 (260)
T PRK06523 76 GGVDILVHVLG 86 (260)
T ss_pred CCCCEEEECCc
Confidence 46899998864
No 367
>PHA03108 poly(A) polymerase small subunit; Provisional
Probab=70.49 E-value=70 Score=28.22 Aligned_cols=75 Identities=16% Similarity=0.225 Sum_probs=50.4
Q ss_pred CCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC----CCCCceEeecCCCChhhHHHHHHhcCC
Q 025715 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----PIEGVIQVQGDITNARTAEVVIRHFDG 117 (249)
Q Consensus 42 g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~----~~~~v~~~~gDi~~~~~~~~i~~~~~~ 117 (249)
|..||=+|+|||.....|.+..... +..-+.+-+|..+.. .+++|+.++ +..+.+.+..+.+.+.
T Consensus 61 g~~VVYiGSApG~HI~~L~~lf~~l---------g~~ikw~LiDp~~h~~~Le~l~nV~Li~-~f~de~~i~~~r~~~~- 129 (300)
T PHA03108 61 GSTIVYIGSAPGTHIRYLRDHFYSL---------GVVIKWMLIDGRKHDPILNGLRDVTLVT-RFVDEAYLRRLKKQLH- 129 (300)
T ss_pred CceEEEecCCCCccHHHHHHHHHhc---------CCCeEEEEECCCcccHhhcCCCcEEeeH-hhcCHHHHHHHHHhcc-
Confidence 6799999999999999998876510 012467888988864 346676554 5666665555544333
Q ss_pred CcccEE-EeCCC
Q 025715 118 CKADLV-VCDGA 128 (249)
Q Consensus 118 ~~~DlV-lsD~~ 128 (249)
.-|++ +||..
T Consensus 130 -~~~illISDIR 140 (300)
T PHA03108 130 -PSKIILISDIR 140 (300)
T ss_pred -CCCEEEEEeec
Confidence 45777 67763
No 368
>PRK07904 short chain dehydrogenase; Provisional
Probab=70.39 E-value=26 Score=29.64 Aligned_cols=77 Identities=12% Similarity=0.099 Sum_probs=49.2
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-------CC-----CCceEeecCCCChhhH
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-------PI-----EGVIQVQGDITNARTA 108 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-------~~-----~~v~~~~gDi~~~~~~ 108 (249)
.+.+||=.|+ +|+....+++++-.. ....|+.++.++.. .+ .+++++++|+++.+..
T Consensus 7 ~~~~vlItGa-s~giG~~la~~l~~~----------gg~~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~~D~~~~~~~ 75 (253)
T PRK07904 7 NPQTILLLGG-TSEIGLAICERYLKN----------APARVVLAALPDDPRRDAAVAQMKAAGASSVEVIDFDALDTDSH 75 (253)
T ss_pred CCcEEEEEcC-CcHHHHHHHHHHHhc----------CCCeEEEEeCCcchhHHHHHHHHHhcCCCceEEEEecCCChHHH
Confidence 5678888887 677888887765310 12588888877532 01 2577889999987754
Q ss_pred HHHHHhc-CCCcccEEEeCCC
Q 025715 109 EVVIRHF-DGCKADLVVCDGA 128 (249)
Q Consensus 109 ~~i~~~~-~~~~~DlVlsD~~ 128 (249)
....+.. ..+..|+++.+..
T Consensus 76 ~~~~~~~~~~g~id~li~~ag 96 (253)
T PRK07904 76 PKVIDAAFAGGDVDVAIVAFG 96 (253)
T ss_pred HHHHHHHHhcCCCCEEEEeee
Confidence 4433322 2257998887653
No 369
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=70.37 E-value=75 Score=31.02 Aligned_cols=71 Identities=15% Similarity=0.028 Sum_probs=46.7
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC-------------------CCCceEeecC
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP-------------------IEGVIQVQGD 101 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~-------------------~~~v~~~~gD 101 (249)
.|.+||=.|+ +|+...++++++.. .+..|++++.+.... ..++.++.+|
T Consensus 79 ~gKvVLVTGA-TGgIG~aLAr~LLk-----------~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gD 146 (576)
T PLN03209 79 DEDLAFVAGA-TGKVGSRTVRELLK-----------LGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECD 146 (576)
T ss_pred CCCEEEEECC-CCHHHHHHHHHHHH-----------CCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEec
Confidence 5667777775 68888888776641 235788887764210 0246788999
Q ss_pred CCChhhHHHHHHhcCCCcccEEEeCCC
Q 025715 102 ITNARTAEVVIRHFDGCKADLVVCDGA 128 (249)
Q Consensus 102 i~~~~~~~~i~~~~~~~~~DlVlsD~~ 128 (249)
+.+.+.+ .+.+. .+|+|++...
T Consensus 147 LtD~esI---~~aLg--giDiVVn~AG 168 (576)
T PLN03209 147 LEKPDQI---GPALG--NASVVICCIG 168 (576)
T ss_pred CCCHHHH---HHHhc--CCCEEEEccc
Confidence 9986543 33343 5899998754
No 370
>PF12803 G-7-MTase: mRNA (guanine-7-)methyltransferase (G-7-MTase); InterPro: IPR024352 The Sendai virus RNA-dependent RNA polymerase complex, which consists of L and P proteins, participates in the synthesis of viral mRNAs that possess a methylated cap structure. The N-terminal part of the L protein acts as an RNA-dependent RNA polymerase (PF00946 from PFAM). This entry represents the following domain, which catalyses cap methylation through its mRNA (guanine-7-)methyltransferase (G-7-MTase) activity [].
Probab=70.25 E-value=7.5 Score=34.99 Aligned_cols=50 Identities=12% Similarity=0.066 Sum_probs=41.5
Q ss_pred HHHHHHhccchhhhhhHHhhhhhcCcc-cCCCeEEEEcCCCChHHHHHHHH
Q 025715 13 YRKAKEEGWRARSAFKLLQIDEEFNIF-EGVKRVVDLCAAPGSWSQVLSRK 62 (249)
Q Consensus 13 ~~~a~~~~~~~ra~~KL~ei~~~~~~~-~~g~~vLDLG~gpG~~s~~l~~~ 62 (249)
.+..|.-|.+|.||||-.++....... .++..-|-||+|.|+....+-..
T Consensus 271 ~H~lR~vG~~STSwYKa~~l~~~l~~~~~~~g~~LyLgEGSGamMt~~e~~ 321 (324)
T PF12803_consen 271 HHILRRVGLNSTSWYKALELLSVLSRLQLPGGDSLYLGEGSGAMMTLYEYL 321 (324)
T ss_pred hHHhhhccccchHHHHHHHHHHHHHhhcCCCCCeEEEecCCchHHHHHHhh
Confidence 568899999999999999998877643 56778999999999987766443
No 371
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=69.95 E-value=16 Score=33.84 Aligned_cols=70 Identities=20% Similarity=0.176 Sum_probs=50.5
Q ss_pred CeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-------CCCCceEeecCCCChhhHHHHHHhc
Q 025715 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-------PIEGVIQVQGDITNARTAEVVIRHF 115 (249)
Q Consensus 43 ~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-------~~~~v~~~~gDi~~~~~~~~i~~~~ 115 (249)
++||=||| |+..+.+++.+... .+..|+..|.++.. ...++++.+-|+.+.+.+..+.
T Consensus 2 ~~ilviGa--G~Vg~~va~~la~~----------~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li--- 66 (389)
T COG1748 2 MKILVIGA--GGVGSVVAHKLAQN----------GDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALI--- 66 (389)
T ss_pred CcEEEECC--chhHHHHHHHHHhC----------CCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHH---
Confidence 57888998 88888888876521 23799999999643 1247889999999987655443
Q ss_pred CCCcccEEEeCCCC
Q 025715 116 DGCKADLVVCDGAP 129 (249)
Q Consensus 116 ~~~~~DlVlsD~~~ 129 (249)
. .+|+|++-+.+
T Consensus 67 ~--~~d~VIn~~p~ 78 (389)
T COG1748 67 K--DFDLVINAAPP 78 (389)
T ss_pred h--cCCEEEEeCCc
Confidence 3 35999986543
No 372
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=69.52 E-value=6.3 Score=36.21 Aligned_cols=93 Identities=23% Similarity=0.233 Sum_probs=57.0
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC-----------CC--CceEeecCCCChhh
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP-----------IE--GVIQVQGDITNART 107 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~-----------~~--~v~~~~gDi~~~~~ 107 (249)
...++||.=+|+|.=+..++..++ ...+|++.|+++.+. +. .++..+.|....
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~------------~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~l-- 114 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELA------------GVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVL-- 114 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-S------------SECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHH--
T ss_pred CCceEEeccccccHHHHHHHHHcC------------CCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHH--
Confidence 346999999999999988887754 246899999998531 11 234444444321
Q ss_pred HHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEE
Q 025715 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKI 167 (249)
Q Consensus 108 ~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~ 167 (249)
.. .....||+|=.|+. |- . ...+..|.+.++.||.|.++.
T Consensus 115 ----l~-~~~~~fD~IDlDPf----GS---p--------~pfldsA~~~v~~gGll~vTa 154 (377)
T PF02005_consen 115 ----LY-SRQERFDVIDLDPF----GS---P--------APFLDSALQAVKDGGLLCVTA 154 (377)
T ss_dssp ----HC-HSTT-EEEEEE--S----S-------------HHHHHHHHHHEEEEEEEEEEE
T ss_pred ----hh-hccccCCEEEeCCC----CC---c--------cHhHHHHHHHhhcCCEEEEec
Confidence 10 14578999999862 11 0 135778899999999998864
No 373
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=69.43 E-value=1.8 Score=40.16 Aligned_cols=37 Identities=27% Similarity=0.330 Sum_probs=32.7
Q ss_pred cccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCC
Q 025715 38 IFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM 89 (249)
Q Consensus 38 ~~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~ 89 (249)
.+++|..|.|++||-|-|+.-++.. .+.|+|.|+++.
T Consensus 246 ~fk~gevv~D~FaGvGPfa~Pa~kK---------------~crV~aNDLNpe 282 (495)
T KOG2078|consen 246 LFKPGEVVCDVFAGVGPFALPAAKK---------------GCRVYANDLNPE 282 (495)
T ss_pred ccCCcchhhhhhcCcCccccchhhc---------------CcEEEecCCCHH
Confidence 5789999999999999999888764 389999999984
No 374
>PLN02427 UDP-apiose/xylose synthase
Probab=69.19 E-value=88 Score=28.22 Aligned_cols=71 Identities=18% Similarity=0.104 Sum_probs=47.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----C------CCCceEeecCCCChhhHHH
Q 025715 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----P------IEGVIQVQGDITNARTAEV 110 (249)
Q Consensus 42 g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----~------~~~v~~~~gDi~~~~~~~~ 110 (249)
.++||=.| |+|....++++++-.. ...+|+++|.++.. . .++++++.+|+++......
T Consensus 14 ~~~VlVTG-gtGfIGs~lv~~L~~~----------~g~~V~~l~r~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~ 82 (386)
T PLN02427 14 PLTICMIG-AGGFIGSHLCEKLMTE----------TPHKVLALDVYNDKIKHLLEPDTVPWSGRIQFHRINIKHDSRLEG 82 (386)
T ss_pred CcEEEEEC-CcchHHHHHHHHHHhc----------CCCEEEEEecCchhhhhhhccccccCCCCeEEEEcCCCChHHHHH
Confidence 36788666 7899999988877410 12479999976421 0 1368899999999765443
Q ss_pred HHHhcCCCcccEEEeCCC
Q 025715 111 VIRHFDGCKADLVVCDGA 128 (249)
Q Consensus 111 i~~~~~~~~~DlVlsD~~ 128 (249)
+ +. .+|.|+.-++
T Consensus 83 ~---~~--~~d~ViHlAa 95 (386)
T PLN02427 83 L---IK--MADLTINLAA 95 (386)
T ss_pred H---hh--cCCEEEEccc
Confidence 3 32 4899987654
No 375
>PRK05884 short chain dehydrogenase; Provisional
Probab=69.14 E-value=63 Score=26.69 Aligned_cols=72 Identities=14% Similarity=0.018 Sum_probs=45.8
Q ss_pred eEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC-----CCCceEeecCCCChhhHHHHHHhcCCC
Q 025715 44 RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP-----IEGVIQVQGDITNARTAEVVIRHFDGC 118 (249)
Q Consensus 44 ~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~-----~~~v~~~~gDi~~~~~~~~i~~~~~~~ 118 (249)
++|=.|+ +|+....+++.+.. .+.+|+.++.++... ..++..+.+|+.+.+....+.+.+. .
T Consensus 2 ~vlItGa-s~giG~~ia~~l~~-----------~g~~v~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~-~ 68 (223)
T PRK05884 2 EVLVTGG-DTDLGRTIAEGFRN-----------DGHKVTLVGARRDDLEVAAKELDVDAIVCDNTDPASLEEARGLFP-H 68 (223)
T ss_pred eEEEEeC-CchHHHHHHHHHHH-----------CCCEEEEEeCCHHHHHHHHHhccCcEEecCCCCHHHHHHHHHHHh-h
Confidence 4555554 45677777776641 246888888765321 1145678899999876666555443 3
Q ss_pred cccEEEeCCC
Q 025715 119 KADLVVCDGA 128 (249)
Q Consensus 119 ~~DlVlsD~~ 128 (249)
.+|+++.+..
T Consensus 69 ~id~lv~~ag 78 (223)
T PRK05884 69 HLDTIVNVPA 78 (223)
T ss_pred cCcEEEECCC
Confidence 6899988754
No 376
>PRK07023 short chain dehydrogenase; Provisional
Probab=69.07 E-value=65 Score=26.67 Aligned_cols=74 Identities=16% Similarity=0.209 Sum_probs=47.7
Q ss_pred CeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC-----CCCceEeecCCCChhhHHHHHH----
Q 025715 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP-----IEGVIQVQGDITNARTAEVVIR---- 113 (249)
Q Consensus 43 ~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~-----~~~v~~~~gDi~~~~~~~~i~~---- 113 (249)
+++|=.| |+|++...+++++.. .+.+|+.++.+.... -.++..+.+|+.+.+.......
T Consensus 2 ~~vlItG-asggiG~~ia~~l~~-----------~G~~v~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 69 (243)
T PRK07023 2 VRAIVTG-HSRGLGAALAEQLLQ-----------PGIAVLGVARSRHPSLAAAAGERLAEVELDLSDAAAAAAWLAGDLL 69 (243)
T ss_pred ceEEEec-CCcchHHHHHHHHHh-----------CCCEEEEEecCcchhhhhccCCeEEEEEeccCCHHHHHHHHHHHHH
Confidence 3677777 577888888877642 235788888765321 1246778899999876555221
Q ss_pred -hc-CCCcccEEEeCCC
Q 025715 114 -HF-DGCKADLVVCDGA 128 (249)
Q Consensus 114 -~~-~~~~~DlVlsD~~ 128 (249)
.+ .....|.++.+..
T Consensus 70 ~~~~~~~~~~~~v~~ag 86 (243)
T PRK07023 70 AAFVDGASRVLLINNAG 86 (243)
T ss_pred HHhccCCCceEEEEcCc
Confidence 12 2246888888864
No 377
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=68.52 E-value=25 Score=31.29 Aligned_cols=88 Identities=19% Similarity=0.095 Sum_probs=48.3
Q ss_pred cCCCeEEEEcCCCChHHHHH---HHHhcCCCCCCCCCCCCCCCeEEEecCC---CCC-C---CCCceEeecCCCChhhHH
Q 025715 40 EGVKRVVDLCAAPGSWSQVL---SRKLYLPAKLSPDSREGDLPLIVAIDLQ---PMA-P---IEGVIQVQGDITNARTAE 109 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l---~~~~~~~~~~~~~~~~~~~~~vvavDi~---~~~-~---~~~v~~~~gDi~~~~~~~ 109 (249)
++|.+||=.|+ |+....+ ++..+ .+|++++.+ +.+ . --++..+ |..+.+..+
T Consensus 171 ~~g~~vlI~G~--G~vG~~a~q~ak~~G--------------~~vi~~~~~~~~~~~~~~~~~~Ga~~v--~~~~~~~~~ 232 (355)
T cd08230 171 WNPRRALVLGA--GPIGLLAALLLRLRG--------------FEVYVLNRRDPPDPKADIVEELGATYV--NSSKTPVAE 232 (355)
T ss_pred CCCCEEEEECC--CHHHHHHHHHHHHcC--------------CeEEEEecCCCCHHHHHHHHHcCCEEe--cCCccchhh
Confidence 47889998886 5555544 44443 579998874 221 0 1133332 222211111
Q ss_pred HHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEE
Q 025715 110 VVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (249)
Q Consensus 110 ~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k 166 (249)
. . ....+|+|+- +.|. . ..+..+.++|++||++++-
T Consensus 233 -~-~--~~~~~d~vid-----~~g~---~---------~~~~~~~~~l~~~G~~v~~ 268 (355)
T cd08230 233 -V-K--LVGEFDLIIE-----ATGV---P---------PLAFEALPALAPNGVVILF 268 (355)
T ss_pred -h-h--hcCCCCEEEE-----CcCC---H---------HHHHHHHHHccCCcEEEEE
Confidence 1 1 1246898884 2331 0 2456778899999998863
No 378
>PLN02827 Alcohol dehydrogenase-like
Probab=68.31 E-value=47 Score=30.10 Aligned_cols=96 Identities=18% Similarity=0.170 Sum_probs=51.2
Q ss_pred ccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC----CCCceEeecCCCC--hhhHHHHH
Q 025715 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----IEGVIQVQGDITN--ARTAEVVI 112 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~----~~~v~~~~gDi~~--~~~~~~i~ 112 (249)
+++|.+||=.|+ |+..+.+.+..... ....|+++|.++.+. --++..+ -|..+ .+....+.
T Consensus 191 ~~~g~~VlV~G~--G~vG~~~iqlak~~----------G~~~vi~~~~~~~~~~~a~~lGa~~~-i~~~~~~~~~~~~v~ 257 (378)
T PLN02827 191 VSKGSSVVIFGL--GTVGLSVAQGAKLR----------GASQIIGVDINPEKAEKAKTFGVTDF-INPNDLSEPIQQVIK 257 (378)
T ss_pred CCCCCEEEEECC--CHHHHHHHHHHHHc----------CCCeEEEECCCHHHHHHHHHcCCcEE-EcccccchHHHHHHH
Confidence 467899998875 66776654432210 013588888766321 1132211 12221 12223333
Q ss_pred HhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCC-CEEEE
Q 025715 113 RHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEG-GKFIA 165 (249)
Q Consensus 113 ~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~g-G~lv~ 165 (249)
+... +.+|+|+- +.|. . ..+..+.+.|++| |++++
T Consensus 258 ~~~~-~g~d~vid-----~~G~---~---------~~~~~~l~~l~~g~G~iv~ 293 (378)
T PLN02827 258 RMTG-GGADYSFE-----CVGD---T---------GIATTALQSCSDGWGLTVT 293 (378)
T ss_pred HHhC-CCCCEEEE-----CCCC---h---------HHHHHHHHhhccCCCEEEE
Confidence 3223 36999884 2332 0 2456678889999 99986
No 379
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=68.22 E-value=18 Score=31.22 Aligned_cols=92 Identities=20% Similarity=0.142 Sum_probs=49.6
Q ss_pred cCCCeEEEEcCCCChHHHHHH---HHhcCCCCCCCCCCCCCCCeEEEecCCCCCC-C---CCceEeecCCCChhhHHHHH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLS---RKLYLPAKLSPDSREGDLPLIVAIDLQPMAP-I---EGVIQVQGDITNARTAEVVI 112 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~---~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~-~---~~v~~~~gDi~~~~~~~~i~ 112 (249)
.+|.+||=.|+ |+....+. +..+ ..+|+++|.++.+. + -++..+ -|..+. .+.+.
T Consensus 119 ~~g~~VlV~G~--G~vG~~~~~~ak~~G-------------~~~Vi~~~~~~~r~~~a~~~Ga~~~-i~~~~~--~~~~~ 180 (280)
T TIGR03366 119 LKGRRVLVVGA--GMLGLTAAAAAAAAG-------------AARVVAADPSPDRRELALSFGATAL-AEPEVL--AERQG 180 (280)
T ss_pred CCCCEEEEECC--CHHHHHHHHHHHHcC-------------CCEEEEECCCHHHHHHHHHcCCcEe-cCchhh--HHHHH
Confidence 37889988875 55655543 3333 12488888776431 0 122111 121111 12222
Q ss_pred HhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEE
Q 025715 113 RHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (249)
Q Consensus 113 ~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k 166 (249)
+......+|+|+-- .|. ...+..+.++|+++|++++-
T Consensus 181 ~~~~~~g~d~vid~-----~G~------------~~~~~~~~~~l~~~G~iv~~ 217 (280)
T TIGR03366 181 GLQNGRGVDVALEF-----SGA------------TAAVRACLESLDVGGTAVLA 217 (280)
T ss_pred HHhCCCCCCEEEEC-----CCC------------hHHHHHHHHHhcCCCEEEEe
Confidence 22233468998842 221 12466778999999999864
No 380
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=68.15 E-value=43 Score=29.92 Aligned_cols=94 Identities=13% Similarity=-0.031 Sum_probs=51.2
Q ss_pred ccCCCeEEEEcCC--CChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-C----CCCceEeecCCCC-hhhHHH
Q 025715 39 FEGVKRVVDLCAA--PGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-P----IEGVIQVQGDITN-ARTAEV 110 (249)
Q Consensus 39 ~~~g~~vLDLG~g--pG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-~----~~~v~~~~gDi~~-~~~~~~ 110 (249)
+++|.+||=.|++ -|.....+++..+ .+|++++.++.+ . --|+..+ -|-.+ .+..+.
T Consensus 156 ~~~g~~VlV~GaaG~vG~~aiqlAk~~G--------------~~Vi~~~~~~~k~~~~~~~lGa~~v-i~~~~~~~~~~~ 220 (348)
T PLN03154 156 PKKGDSVFVSAASGAVGQLVGQLAKLHG--------------CYVVGSAGSSQKVDLLKNKLGFDEA-FNYKEEPDLDAA 220 (348)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHcC--------------CEEEEEcCCHHHHHHHHHhcCCCEE-EECCCcccHHHH
Confidence 4688999888862 3444444555554 578888876522 0 1132111 12111 122223
Q ss_pred HHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEE
Q 025715 111 VIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (249)
Q Consensus 111 i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k 166 (249)
+.+. .++.+|+|+-- .|. ..+..+.++|++||++++-
T Consensus 221 i~~~-~~~gvD~v~d~-----vG~-------------~~~~~~~~~l~~~G~iv~~ 257 (348)
T PLN03154 221 LKRY-FPEGIDIYFDN-----VGG-------------DMLDAALLNMKIHGRIAVC 257 (348)
T ss_pred HHHH-CCCCcEEEEEC-----CCH-------------HHHHHHHHHhccCCEEEEE
Confidence 3332 23579999842 221 1345678899999999863
No 381
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=67.85 E-value=87 Score=28.04 Aligned_cols=144 Identities=14% Similarity=0.129 Sum_probs=82.7
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-------------C--CCCceEeecCCCCh
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-------------P--IEGVIQVQGDITNA 105 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-------------~--~~~v~~~~gDi~~~ 105 (249)
..++||=+|.|-|++....... . .-..+.-+|+..+. . -+.|...-||-..
T Consensus 121 npkkvlVVgggDggvlrevikH-~------------~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~- 186 (337)
T KOG1562|consen 121 NPKKVLVVGGGDGGVLREVIKH-K------------SVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFL- 186 (337)
T ss_pred CCCeEEEEecCCccceeeeecc-c------------cccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHH-
Confidence 3479999999999987655443 2 23466666666531 1 2456666676432
Q ss_pred hhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCCC-----HHHHHHHH
Q 025715 106 RTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKD-----TSLLYCQL 180 (249)
Q Consensus 106 ~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~-----~~~l~~~l 180 (249)
+.+..+.+.||+|+.|-+-.+ | + .........+....+.||+||..++. -...+ ..+.....
T Consensus 187 -----fl~~~~~~~~dVii~dssdpv-g----p--a~~lf~~~~~~~v~~aLk~dgv~~~q-~ec~wl~~~~i~e~r~~~ 253 (337)
T KOG1562|consen 187 -----FLEDLKENPFDVIITDSSDPV-G----P--ACALFQKPYFGLVLDALKGDGVVCTQ-GECMWLHLDYIKEGRSFC 253 (337)
T ss_pred -----HHHHhccCCceEEEEecCCcc-c----h--HHHHHHHHHHHHHHHhhCCCcEEEEe-cceehHHHHHHHHHHHhH
Confidence 222344679999999864221 1 1 11223456788889999999998863 22222 12333444
Q ss_pred hcCCCeeEEecCCCCCC---CCceEEEEEeeccCCC
Q 025715 181 KLFFPVVTFAKPKSSRN---SSIEAFAVCENYFPPE 213 (249)
Q Consensus 181 ~~~f~~v~~~kP~~sr~---~s~E~y~v~~g~~~~~ 213 (249)
+..|..+.. |.++-| ..+-.+.+|--.+.+.
T Consensus 254 ~~~f~~t~y--a~ttvPTypsg~igf~l~s~~~~~~ 287 (337)
T KOG1562|consen 254 YVIFDLTAY--AITTVPTYPSGRIGFMLCSKLKPDG 287 (337)
T ss_pred HHhcCccce--eeecCCCCccceEEEEEecccCCCC
Confidence 445765544 344443 3344677776433333
No 382
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=67.46 E-value=7 Score=34.37 Aligned_cols=37 Identities=16% Similarity=-0.031 Sum_probs=26.7
Q ss_pred cccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCC
Q 025715 38 IFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQP 88 (249)
Q Consensus 38 ~~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~ 88 (249)
+...|++|||||||+|--...+.... ...+...|.+.
T Consensus 113 ~~~~~k~vLELgCg~~Lp~i~~~~~~--------------~~~~~fqD~na 149 (282)
T KOG2920|consen 113 MSFSGKRVLELGCGAALPGIFAFVKG--------------AVSVHFQDFNA 149 (282)
T ss_pred eEecCceeEecCCcccccchhhhhhc--------------cceeeeEecch
Confidence 33578999999999998887776542 24666666665
No 383
>PRK06101 short chain dehydrogenase; Provisional
Probab=67.44 E-value=71 Score=26.50 Aligned_cols=72 Identities=10% Similarity=0.055 Sum_probs=47.4
Q ss_pred eEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC------CCCCceEeecCCCChhhHHHHHHhcCC
Q 025715 44 RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PIEGVIQVQGDITNARTAEVVIRHFDG 117 (249)
Q Consensus 44 ~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~------~~~~v~~~~gDi~~~~~~~~i~~~~~~ 117 (249)
++|=.| |+|+....+++.+.. .+..|+.++.++.. ...++.++.+|+++.+..+.+.+....
T Consensus 3 ~vlItG-as~giG~~la~~L~~-----------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 70 (240)
T PRK06101 3 AVLITG-ATSGIGKQLALDYAK-----------QGWQVIACGRNQSVLDELHTQSANIFTLAFDVTDHPGTKAALSQLPF 70 (240)
T ss_pred EEEEEc-CCcHHHHHHHHHHHh-----------CCCEEEEEECCHHHHHHHHHhcCCCeEEEeeCCCHHHHHHHHHhccc
Confidence 445444 568888888776642 24688888887532 123577889999998877776665542
Q ss_pred CcccEEEeCCC
Q 025715 118 CKADLVVCDGA 128 (249)
Q Consensus 118 ~~~DlVlsD~~ 128 (249)
..|.++.+..
T Consensus 71 -~~d~~i~~ag 80 (240)
T PRK06101 71 -IPELWIFNAG 80 (240)
T ss_pred -CCCEEEEcCc
Confidence 4577766653
No 384
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=67.28 E-value=18 Score=31.77 Aligned_cols=18 Identities=17% Similarity=0.381 Sum_probs=14.7
Q ss_pred HHHHHHHhccCCCEEEEE
Q 025715 149 GLTVVTHVLKEGGKFIAK 166 (249)
Q Consensus 149 ~l~~a~~~Lk~gG~lv~k 166 (249)
.+..+.++|++||++++-
T Consensus 213 ~~~~~~~~l~~~G~iv~~ 230 (308)
T TIGR01202 213 LIDTLVRRLAKGGEIVLA 230 (308)
T ss_pred HHHHHHHhhhcCcEEEEE
Confidence 456778899999999964
No 385
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=67.23 E-value=45 Score=32.02 Aligned_cols=64 Identities=23% Similarity=0.348 Sum_probs=43.9
Q ss_pred CCCChhHHHHHHhccchhhhhhHHhhhhhcCc-c---------cCCCeEEEEcCCCChHHHH-HHHHhcCCCCCCCCCCC
Q 025715 7 DKRDIYYRKAKEEGWRARSAFKLLQIDEEFNI-F---------EGVKRVVDLCAAPGSWSQV-LSRKLYLPAKLSPDSRE 75 (249)
Q Consensus 7 ~~~d~~~~~a~~~~~~~ra~~KL~ei~~~~~~-~---------~~g~~vLDLG~gpG~~s~~-l~~~~~~~~~~~~~~~~ 75 (249)
++.|-+..++...||++ .++.-..++- + .++.+|+=+|+|+=|.... +++.++
T Consensus 124 q~~d~lssma~iAGy~A-----vi~Aa~~lgr~~~g~~taag~vp~akVlViGaG~iGl~Aa~~ak~lG----------- 187 (511)
T TIGR00561 124 QKLDALSSMANIAGYRA-----IIEAAHEFGRFFTGQITAAGKVPPAKVLVIGAGVAGLAAIGAANSLG----------- 187 (511)
T ss_pred CccCcchhhHHHHHHHH-----HHHHHHHhhhhcCCceecCCCCCCCEEEEECCCHHHHHHHHHHHHCC-----------
Confidence 56699999999999984 3333233321 1 3568999999988776654 444554
Q ss_pred CCCCeEEEecCCCC
Q 025715 76 GDLPLIVAIDLQPM 89 (249)
Q Consensus 76 ~~~~~vvavDi~~~ 89 (249)
..|+++|.++.
T Consensus 188 ---A~V~v~d~~~~ 198 (511)
T TIGR00561 188 ---AIVRAFDTRPE 198 (511)
T ss_pred ---CEEEEEeCCHH
Confidence 57899998874
No 386
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=66.89 E-value=76 Score=26.62 Aligned_cols=77 Identities=9% Similarity=0.035 Sum_probs=50.7
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC--------CCCceEeecCCCChhhHHHHH
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP--------IEGVIQVQGDITNARTAEVVI 112 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~--------~~~v~~~~gDi~~~~~~~~i~ 112 (249)
.++++|=.|+ +|++...+++++.. .+.+|+.++.+.... -.++.++..|+++.+....+.
T Consensus 7 ~~k~~lItGa-s~gIG~aia~~l~~-----------~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~ 74 (251)
T PRK12481 7 NGKVAIITGC-NTGLGQGMAIGLAK-----------AGADIVGVGVAEAPETQAQVEALGRKFHFITADLIQQKDIDSIV 74 (251)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHH-----------CCCEEEEecCchHHHHHHHHHHcCCeEEEEEeCCCCHHHHHHHH
Confidence 4678888885 56778887776642 346788887654211 124667899999987766654
Q ss_pred HhcC--CCcccEEEeCCCC
Q 025715 113 RHFD--GCKADLVVCDGAP 129 (249)
Q Consensus 113 ~~~~--~~~~DlVlsD~~~ 129 (249)
+... -+++|.++.+...
T Consensus 75 ~~~~~~~g~iD~lv~~ag~ 93 (251)
T PRK12481 75 SQAVEVMGHIDILINNAGI 93 (251)
T ss_pred HHHHHHcCCCCEEEECCCc
Confidence 4321 1469999988643
No 387
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=66.55 E-value=52 Score=27.48 Aligned_cols=77 Identities=13% Similarity=0.113 Sum_probs=51.1
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC------CC----CCceEeecCCCChhhHHH
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PI----EGVIQVQGDITNARTAEV 110 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~------~~----~~v~~~~gDi~~~~~~~~ 110 (249)
.+++||=.| |+|++...+++++.. .+.+|+.++.++.. .+ ..+..+.+|+++.+..+.
T Consensus 9 ~~k~vlItG-a~g~iG~~ia~~l~~-----------~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~D~~~~~~~~~ 76 (255)
T PRK07523 9 TGRRALVTG-SSQGIGYALAEGLAQ-----------AGAEVILNGRDPAKLAAAAESLKGQGLSAHALAFDVTDHDAVRA 76 (255)
T ss_pred CCCEEEEEC-CcchHHHHHHHHHHH-----------cCCEEEEEeCCHHHHHHHHHHHHhcCceEEEEEccCCCHHHHHH
Confidence 457888888 578888888877642 24688888877532 01 136678899999876555
Q ss_pred HHHhcC--CCcccEEEeCCCC
Q 025715 111 VIRHFD--GCKADLVVCDGAP 129 (249)
Q Consensus 111 i~~~~~--~~~~DlVlsD~~~ 129 (249)
+.+... -+..|.|+.+...
T Consensus 77 ~~~~~~~~~~~~d~li~~ag~ 97 (255)
T PRK07523 77 AIDAFEAEIGPIDILVNNAGM 97 (255)
T ss_pred HHHHHHHhcCCCCEEEECCCC
Confidence 443321 2468999998753
No 388
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=66.49 E-value=27 Score=31.13 Aligned_cols=92 Identities=5% Similarity=-0.018 Sum_probs=48.5
Q ss_pred cCCCeEEEEcCCCChHHH-HHHHH-hcCCCCCCCCCCCCCCCeEEEecCCCCCCCCCceEeecCCCChhhHHHHHHhcCC
Q 025715 40 EGVKRVVDLCAAPGSWSQ-VLSRK-LYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDG 117 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~-~l~~~-~~~~~~~~~~~~~~~~~~vvavDi~~~~~~~~v~~~~gDi~~~~~~~~i~~~~~~ 117 (249)
++|.+||=+|||+=|... .++++ .+ ..+|+++|.++.+. +-+.....+.. . ..+. ..
T Consensus 162 ~~g~~VlV~G~G~vGl~~~~~a~~~~g-------------~~~vi~~~~~~~k~-~~a~~~~~~~~-~---~~~~---~~ 220 (341)
T cd08237 162 KDRNVIGVWGDGNLGYITALLLKQIYP-------------ESKLVVFGKHQEKL-DLFSFADETYL-I---DDIP---ED 220 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhcC-------------CCcEEEEeCcHhHH-HHHhhcCceee-h---hhhh---hc
Confidence 678999999975544332 23443 32 35799999886431 00000001100 0 0111 11
Q ss_pred CcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEE
Q 025715 118 CKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (249)
Q Consensus 118 ~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k 166 (249)
..+|+|+- +.|-... ...+..+.++|++||++++-
T Consensus 221 ~g~d~viD-----~~G~~~~---------~~~~~~~~~~l~~~G~iv~~ 255 (341)
T cd08237 221 LAVDHAFE-----CVGGRGS---------QSAINQIIDYIRPQGTIGLM 255 (341)
T ss_pred cCCcEEEE-----CCCCCcc---------HHHHHHHHHhCcCCcEEEEE
Confidence 24888873 2331100 13567788999999999864
No 389
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=66.42 E-value=36 Score=30.15 Aligned_cols=94 Identities=16% Similarity=0.124 Sum_probs=49.7
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC--C--CCceEeecCCCChhhHHHHHHhc
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP--I--EGVIQVQGDITNARTAEVVIRHF 115 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~--~--~~v~~~~gDi~~~~~~~~i~~~~ 115 (249)
.+|.+||=.|+ |+...++.+..... ...+|+++|.++.+. . -|...+ -|..+.+ ...+.+
T Consensus 168 ~~g~~VlV~G~--G~vG~~aiqlak~~----------G~~~Vi~~~~~~~~~~~a~~lGa~~v-i~~~~~~-~~~~~~-- 231 (343)
T PRK09880 168 LQGKRVFVSGV--GPIGCLIVAAVKTL----------GAAEIVCADVSPRSLSLAREMGADKL-VNPQNDD-LDHYKA-- 231 (343)
T ss_pred CCCCEEEEECC--CHHHHHHHHHHHHc----------CCcEEEEEeCCHHHHHHHHHcCCcEE-ecCCccc-HHHHhc--
Confidence 36889998875 66666554432210 023688999886431 0 122211 1222211 112221
Q ss_pred CCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEE
Q 025715 116 DGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (249)
Q Consensus 116 ~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k 166 (249)
..+.+|+|+- +.|.. ..+..+.++|++||++++-
T Consensus 232 ~~g~~D~vid-----~~G~~------------~~~~~~~~~l~~~G~iv~~ 265 (343)
T PRK09880 232 EKGYFDVSFE-----VSGHP------------SSINTCLEVTRAKGVMVQV 265 (343)
T ss_pred cCCCCCEEEE-----CCCCH------------HHHHHHHHHhhcCCEEEEE
Confidence 1235898884 23320 2355678899999999874
No 390
>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated
Probab=66.39 E-value=75 Score=26.34 Aligned_cols=76 Identities=12% Similarity=-0.003 Sum_probs=48.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC-CCCceEeecCCCChhhHHHHHHhcC--CC
Q 025715 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP-IEGVIQVQGDITNARTAEVVIRHFD--GC 118 (249)
Q Consensus 42 g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~-~~~v~~~~gDi~~~~~~~~i~~~~~--~~ 118 (249)
++++|=.|+ +|+....+++.+.. .+.+|++++.++... -.++.++..|+++.+....+.+... .+
T Consensus 8 ~k~vlItGa-s~~iG~~la~~l~~-----------~G~~v~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 75 (252)
T PRK08220 8 GKTVWVTGA-AQGIGYAVALAFVE-----------AGAKVIGFDQAFLTQEDYPFATFVLDVSDAAAVAQVCQRLLAETG 75 (252)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHH-----------CCCEEEEEecchhhhcCCceEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 456776665 45667777665531 246888888876221 1346778899999876655443221 14
Q ss_pred cccEEEeCCCC
Q 025715 119 KADLVVCDGAP 129 (249)
Q Consensus 119 ~~DlVlsD~~~ 129 (249)
++|+|+.+...
T Consensus 76 ~id~vi~~ag~ 86 (252)
T PRK08220 76 PLDVLVNAAGI 86 (252)
T ss_pred CCCEEEECCCc
Confidence 68999988643
No 391
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=66.03 E-value=1.1e+02 Score=30.19 Aligned_cols=75 Identities=19% Similarity=0.096 Sum_probs=49.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCC----------CCCCCceEeecCCCChhhHHHH
Q 025715 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM----------APIEGVIQVQGDITNARTAEVV 111 (249)
Q Consensus 42 g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~----------~~~~~v~~~~gDi~~~~~~~~i 111 (249)
+++||=.| |+|....++.+.+-.. +...+|+++|..+. ...++++++.+|+++.+....+
T Consensus 6 ~~~VLVTG-atGfIG~~lv~~Ll~~---------g~~~~V~~~d~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~~~~~~ 75 (668)
T PLN02260 6 PKNILITG-AAGFIASHVANRLIRN---------YPDYKIVVLDKLDYCSNLKNLNPSKSSPNFKFVKGDIASADLVNYL 75 (668)
T ss_pred CCEEEEEC-CCcHHHHHHHHHHHHh---------CCCCEEEEEeCCCccchhhhhhhcccCCCeEEEECCCCChHHHHHH
Confidence 46788777 5699999888876310 01358999987431 0124688899999997654332
Q ss_pred HHhcCCCcccEEEeCCCC
Q 025715 112 IRHFDGCKADLVVCDGAP 129 (249)
Q Consensus 112 ~~~~~~~~~DlVlsD~~~ 129 (249)
+....+|.|+.-.+.
T Consensus 76 ---~~~~~~D~ViHlAa~ 90 (668)
T PLN02260 76 ---LITEGIDTIMHFAAQ 90 (668)
T ss_pred ---HhhcCCCEEEECCCc
Confidence 223569999886643
No 392
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=65.87 E-value=5.5 Score=35.61 Aligned_cols=37 Identities=19% Similarity=0.398 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhccCCCEEEEEEecCCCHHHHHHHHhc
Q 025715 146 ILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKL 182 (249)
Q Consensus 146 ~~~~l~~a~~~Lk~gG~lv~k~~~~~~~~~l~~~l~~ 182 (249)
+...|..+..+|+|||++++-+|++.+..-+-..++.
T Consensus 220 L~~~L~~a~~~L~~gGrl~VISFHSLEDRiVK~~f~~ 256 (310)
T PF01795_consen 220 LERGLEAAPDLLKPGGRLVVISFHSLEDRIVKQFFRE 256 (310)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcCCcEEEEEEecchhhHHHHHHHHH
Confidence 4667888899999999999989887665556565654
No 393
>PRK13699 putative methylase; Provisional
Probab=65.61 E-value=7.6 Score=32.98 Aligned_cols=34 Identities=21% Similarity=0.085 Sum_probs=27.9
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCC
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQP 88 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~ 88 (249)
.+|..|||--||+|+...++.+ ++ -..+|+|+++
T Consensus 162 ~~g~~vlDpf~Gsgtt~~aa~~-~~--------------r~~~g~e~~~ 195 (227)
T PRK13699 162 HPNAIVLDPFAGSGSTCVAALQ-SG--------------RRYIGIELLE 195 (227)
T ss_pred CCCCEEEeCCCCCCHHHHHHHH-cC--------------CCEEEEecCH
Confidence 6899999999999997766554 43 5889999987
No 394
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=65.36 E-value=50 Score=29.89 Aligned_cols=92 Identities=16% Similarity=0.117 Sum_probs=56.4
Q ss_pred cCCCeEEEEcC-CCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC---CC--CceEeecCCC-ChhhHHHHH
Q 025715 40 EGVKRVVDLCA-APGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP---IE--GVIQVQGDIT-NARTAEVVI 112 (249)
Q Consensus 40 ~~g~~vLDLG~-gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~---~~--~v~~~~gDi~-~~~~~~~i~ 112 (249)
.||+++-=.|. |=|.+...+++.++ .+|+++|.+.-+. +. |.... -|.+ +++-.+.+.
T Consensus 180 ~pG~~vgI~GlGGLGh~aVq~AKAMG--------------~rV~vis~~~~kkeea~~~LGAd~f-v~~~~d~d~~~~~~ 244 (360)
T KOG0023|consen 180 GPGKWVGIVGLGGLGHMAVQYAKAMG--------------MRVTVISTSSKKKEEAIKSLGADVF-VDSTEDPDIMKAIM 244 (360)
T ss_pred CCCcEEEEecCcccchHHHHHHHHhC--------------cEEEEEeCCchhHHHHHHhcCccee-EEecCCHHHHHHHH
Confidence 48888777765 47888888898887 8999999986321 11 22221 1444 444444454
Q ss_pred HhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEE
Q 025715 113 RHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (249)
Q Consensus 113 ~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k 166 (249)
+.+. .-.|-|.+ . ....++.+.++||++|++|+-
T Consensus 245 ~~~d-g~~~~v~~-----~--------------a~~~~~~~~~~lk~~Gt~V~v 278 (360)
T KOG0023|consen 245 KTTD-GGIDTVSN-----L--------------AEHALEPLLGLLKVNGTLVLV 278 (360)
T ss_pred Hhhc-Ccceeeee-----c--------------cccchHHHHHHhhcCCEEEEE
Confidence 4332 23333331 1 013566788999999999974
No 395
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=65.08 E-value=82 Score=26.32 Aligned_cols=75 Identities=16% Similarity=0.176 Sum_probs=49.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC------CC-CCceEeecCCCChhhHHHHHHh
Q 025715 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PI-EGVIQVQGDITNARTAEVVIRH 114 (249)
Q Consensus 42 g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~------~~-~~v~~~~gDi~~~~~~~~i~~~ 114 (249)
+.++|=.| |+|++...+++.+.. .+.+|+.+|.+... .+ ..+.++.+|+++.+....+.+.
T Consensus 6 ~~~vlItG-as~~iG~~ia~~l~~-----------~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 73 (257)
T PRK07067 6 GKVALLTG-AASGIGEAVAERYLA-----------EGARVVIADIKPARARLAALEIGPAAIAVSLDVTRQDSIDRIVAA 73 (257)
T ss_pred CCEEEEeC-CCchHHHHHHHHHHH-----------cCCEEEEEcCCHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHH
Confidence 45677666 667888888877642 23588888877632 11 2467788999998766554443
Q ss_pred cC--CCcccEEEeCCC
Q 025715 115 FD--GCKADLVVCDGA 128 (249)
Q Consensus 115 ~~--~~~~DlVlsD~~ 128 (249)
+. .+..|.++.+..
T Consensus 74 ~~~~~~~id~li~~ag 89 (257)
T PRK07067 74 AVERFGGIDILFNNAA 89 (257)
T ss_pred HHHHcCCCCEEEECCC
Confidence 21 146899988764
No 396
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=64.94 E-value=25 Score=29.31 Aligned_cols=64 Identities=17% Similarity=0.114 Sum_probs=43.3
Q ss_pred CCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC--CCCCceEeecCCCChhhHHHHHHhcCCCcccEEEeCC
Q 025715 50 AAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--PIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDG 127 (249)
Q Consensus 50 ~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~--~~~~v~~~~gDi~~~~~~~~i~~~~~~~~~DlVlsD~ 127 (249)
|++|--...+++..-. .+-+|+|+=.++.+ ..+++..++.|+.++...+.. + ..+|+|++--
T Consensus 7 gAsG~~Gs~i~~EA~~-----------RGHeVTAivRn~~K~~~~~~~~i~q~Difd~~~~a~~---l--~g~DaVIsA~ 70 (211)
T COG2910 7 GASGKAGSRILKEALK-----------RGHEVTAIVRNASKLAARQGVTILQKDIFDLTSLASD---L--AGHDAVISAF 70 (211)
T ss_pred ecCchhHHHHHHHHHh-----------CCCeeEEEEeChHhccccccceeecccccChhhhHhh---h--cCCceEEEec
Confidence 4677777776554320 23589999888754 347888999999998754332 2 3699999864
Q ss_pred CC
Q 025715 128 AP 129 (249)
Q Consensus 128 ~~ 129 (249)
.+
T Consensus 71 ~~ 72 (211)
T COG2910 71 GA 72 (211)
T ss_pred cC
Confidence 33
No 397
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=64.63 E-value=31 Score=30.23 Aligned_cols=92 Identities=15% Similarity=0.083 Sum_probs=48.8
Q ss_pred ccCCCeEEEEcCCCChHHHH---HHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC--C--CCce-EeecCCCChhhHHH
Q 025715 39 FEGVKRVVDLCAAPGSWSQV---LSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP--I--EGVI-QVQGDITNARTAEV 110 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~---l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~--~--~~v~-~~~gDi~~~~~~~~ 110 (249)
+++|.+||=.|++ |+.... +++..+ .+|++++.++.+. . -|+. .+ |..+.+....
T Consensus 136 ~~~g~~VLI~ga~-g~vG~~aiqlAk~~G--------------~~Vi~~~~s~~~~~~~~~lGa~~vi--~~~~~~~~~~ 198 (325)
T TIGR02825 136 VKGGETVMVNAAA-GAVGSVVGQIAKLKG--------------CKVVGAAGSDEKVAYLKKLGFDVAF--NYKTVKSLEE 198 (325)
T ss_pred CCCCCEEEEeCCc-cHHHHHHHHHHHHcC--------------CEEEEEeCCHHHHHHHHHcCCCEEE--eccccccHHH
Confidence 4688999887753 444444 444443 5788887765321 1 1221 12 1111111111
Q ss_pred HHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEE
Q 025715 111 VIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIA 165 (249)
Q Consensus 111 i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~ 165 (249)
......++.+|+|+-- .|. ..+..+.++|++||++++
T Consensus 199 ~~~~~~~~gvdvv~d~-----~G~-------------~~~~~~~~~l~~~G~iv~ 235 (325)
T TIGR02825 199 TLKKASPDGYDCYFDN-----VGG-------------EFSNTVIGQMKKFGRIAI 235 (325)
T ss_pred HHHHhCCCCeEEEEEC-----CCH-------------HHHHHHHHHhCcCcEEEE
Confidence 2222233579999842 221 124567889999999996
No 398
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=64.61 E-value=5.5 Score=33.69 Aligned_cols=32 Identities=19% Similarity=0.179 Sum_probs=25.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCC
Q 025715 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQP 88 (249)
Q Consensus 42 g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~ 88 (249)
..++||||+|-|-.+..++.... +|+|-+++.
T Consensus 113 ~~~lLDlGAGdGeit~~m~p~fe---------------evyATElS~ 144 (288)
T KOG3987|consen 113 PVTLLDLGAGDGEITLRMAPTFE---------------EVYATELSW 144 (288)
T ss_pred CeeEEeccCCCcchhhhhcchHH---------------HHHHHHhhH
Confidence 47999999999999988876653 577777765
No 399
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=64.06 E-value=74 Score=27.25 Aligned_cols=67 Identities=18% Similarity=0.122 Sum_probs=42.5
Q ss_pred CCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCC-------CC---CCCceEeecCCCChhhHHHHHHhcCCCcc
Q 025715 51 APGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM-------AP---IEGVIQVQGDITNARTAEVVIRHFDGCKA 120 (249)
Q Consensus 51 gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~-------~~---~~~v~~~~gDi~~~~~~~~i~~~~~~~~~ 120 (249)
|+|....++++++-.. +...+|+++|.... .. .+++.++.+|+++.+....+.+ ..++
T Consensus 7 atG~iG~~l~~~l~~~---------~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---~~~~ 74 (317)
T TIGR01181 7 GAGFIGSNFVRYILNE---------HPDAEVIVLDKLTYAGNLENLADLEDNPRYRFVKGDIGDRELVSRLFT---EHQP 74 (317)
T ss_pred CCchHHHHHHHHHHHh---------CCCCEEEEecCCCcchhhhhhhhhccCCCcEEEEcCCcCHHHHHHHHh---hcCC
Confidence 7889999888866310 01247888875321 11 1357788999999876544433 2358
Q ss_pred cEEEeCCCC
Q 025715 121 DLVVCDGAP 129 (249)
Q Consensus 121 DlVlsD~~~ 129 (249)
|.|+...+.
T Consensus 75 d~vi~~a~~ 83 (317)
T TIGR01181 75 DAVVHFAAE 83 (317)
T ss_pred CEEEEcccc
Confidence 999887643
No 400
>PRK12939 short chain dehydrogenase; Provisional
Probab=63.54 E-value=83 Score=25.90 Aligned_cols=75 Identities=11% Similarity=0.021 Sum_probs=49.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC------CC----CCceEeecCCCChhhHHHH
Q 025715 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PI----EGVIQVQGDITNARTAEVV 111 (249)
Q Consensus 42 g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~------~~----~~v~~~~gDi~~~~~~~~i 111 (249)
++++|=.| |.|+....+++.+.. .+.+|+.++.++.. .+ .++.++.+|+++.+....+
T Consensus 7 ~~~vlItG-a~g~iG~~la~~l~~-----------~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 74 (250)
T PRK12939 7 GKRALVTG-AARGLGAAFAEALAE-----------AGATVAFNDGLAAEARELAAALEAAGGRAHAIAADLADPASVQRF 74 (250)
T ss_pred CCEEEEeC-CCChHHHHHHHHHHH-----------cCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHH
Confidence 56777666 478888888876641 23578888876531 01 2467789999998765554
Q ss_pred HHhcC--CCcccEEEeCCC
Q 025715 112 IRHFD--GCKADLVVCDGA 128 (249)
Q Consensus 112 ~~~~~--~~~~DlVlsD~~ 128 (249)
.+... -+.+|.|+....
T Consensus 75 ~~~~~~~~~~id~vi~~ag 93 (250)
T PRK12939 75 FDAAAAALGGLDGLVNNAG 93 (250)
T ss_pred HHHHHHHcCCCCEEEECCC
Confidence 43321 146899988764
No 401
>PRK08339 short chain dehydrogenase; Provisional
Probab=63.26 E-value=93 Score=26.36 Aligned_cols=76 Identities=12% Similarity=0.081 Sum_probs=49.3
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC------CC-----CCceEeecCCCChhhHH
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PI-----EGVIQVQGDITNARTAE 109 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~------~~-----~~v~~~~gDi~~~~~~~ 109 (249)
.++++|=.|++ |+....+++.+.. .+.+|+.++.++.. .+ .++.++.+|+++.+..+
T Consensus 7 ~~k~~lItGas-~gIG~aia~~l~~-----------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~ 74 (263)
T PRK08339 7 SGKLAFTTASS-KGIGFGVARVLAR-----------AGADVILLSRNEENLKKAREKIKSESNVDVSYIVADLTKREDLE 74 (263)
T ss_pred CCCEEEEeCCC-CcHHHHHHHHHHH-----------CCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHH
Confidence 35677877755 5667777766542 24688888876521 01 24677899999987665
Q ss_pred HHHHhcC-CCcccEEEeCCC
Q 025715 110 VVIRHFD-GCKADLVVCDGA 128 (249)
Q Consensus 110 ~i~~~~~-~~~~DlVlsD~~ 128 (249)
.+.+.+. -+.+|+++.+..
T Consensus 75 ~~~~~~~~~g~iD~lv~nag 94 (263)
T PRK08339 75 RTVKELKNIGEPDIFFFSTG 94 (263)
T ss_pred HHHHHHHhhCCCcEEEECCC
Confidence 5544332 146999998864
No 402
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.24 E-value=3.9 Score=32.68 Aligned_cols=46 Identities=22% Similarity=0.330 Sum_probs=32.9
Q ss_pred HhhhhhcCcc--cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCC
Q 025715 30 LQIDEEFNIF--EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM 89 (249)
Q Consensus 30 ~ei~~~~~~~--~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~ 89 (249)
.|+....+++ ++..+.+|||+|-|......++. + .-.-+|++++|.
T Consensus 59 eQv~nVLSll~~n~~GklvDlGSGDGRiVlaaar~-g-------------~~~a~GvELNpw 106 (199)
T KOG4058|consen 59 EQVENVLSLLRGNPKGKLVDLGSGDGRIVLAAARC-G-------------LRPAVGVELNPW 106 (199)
T ss_pred HHHHHHHHHccCCCCCcEEeccCCCceeehhhhhh-C-------------CCcCCceeccHH
Confidence 3555556655 44468999999999988777653 2 245688999985
No 403
>PRK06128 oxidoreductase; Provisional
Probab=63.19 E-value=1e+02 Score=26.73 Aligned_cols=112 Identities=11% Similarity=0.041 Sum_probs=61.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC--------CC----CCceEeecCCCChhhHH
Q 025715 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--------PI----EGVIQVQGDITNARTAE 109 (249)
Q Consensus 42 g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~--------~~----~~v~~~~gDi~~~~~~~ 109 (249)
++++|=.| |+|++...+++.+.. .+..|+.+.+.... .+ ..+.++.+|+++.+...
T Consensus 55 ~k~vlITG-as~gIG~~~a~~l~~-----------~G~~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~ 122 (300)
T PRK06128 55 GRKALITG-ADSGIGRATAIAFAR-----------EGADIALNYLPEEEQDAAEVVQLIQAEGRKAVALPGDLKDEAFCR 122 (300)
T ss_pred CCEEEEec-CCCcHHHHHHHHHHH-----------cCCEEEEEeCCcchHHHHHHHHHHHHcCCeEEEEecCCCCHHHHH
Confidence 46788888 567777777776642 23566665543311 01 23567889999987655
Q ss_pred HHHHhcC--CCcccEEEeCCCCCC-CC-CCCcCHHH---HHHH----HHHHHHHHHHhccCCCEEEE
Q 025715 110 VVIRHFD--GCKADLVVCDGAPDV-TG-LHDMDEFV---QSQL----ILAGLTVVTHVLKEGGKFIA 165 (249)
Q Consensus 110 ~i~~~~~--~~~~DlVlsD~~~~~-~g-~~~~~~~~---~~~l----~~~~l~~a~~~Lk~gG~lv~ 165 (249)
.+.+... -+.+|+++.+..... .+ ..+.+... ..+. ....+..+...++++|.++.
T Consensus 123 ~~~~~~~~~~g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~ 189 (300)
T PRK06128 123 QLVERAVKELGGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIIN 189 (300)
T ss_pred HHHHHHHHHhCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEE
Confidence 5443221 146999999875321 11 11112111 1111 12344555666778888775
No 404
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=62.97 E-value=58 Score=29.29 Aligned_cols=94 Identities=19% Similarity=0.183 Sum_probs=50.0
Q ss_pred ccCCCeEEEEcCCCChHHHHH---HHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC--C--CCceEeecCCCC--hhhHH
Q 025715 39 FEGVKRVVDLCAAPGSWSQVL---SRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP--I--EGVIQVQGDITN--ARTAE 109 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~l---~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~--~--~~v~~~~gDi~~--~~~~~ 109 (249)
+++|.+||=.|+ |+....+ ++.++ ..+|+++|.++.+. . -++..+ -|..+ .....
T Consensus 183 ~~~g~~VlV~G~--G~iG~~a~q~Ak~~G-------------~~~Vi~~~~~~~~~~~a~~~Ga~~~-i~~~~~~~~~~~ 246 (368)
T TIGR02818 183 VEEGDTVAVFGL--GGIGLSVIQGARMAK-------------ASRIIAIDINPAKFELAKKLGATDC-VNPNDYDKPIQE 246 (368)
T ss_pred CCCCCEEEEECC--CHHHHHHHHHHHHcC-------------CCeEEEEcCCHHHHHHHHHhCCCeE-EcccccchhHHH
Confidence 467889998876 5555544 44443 12799998876431 0 122111 12221 11122
Q ss_pred HHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCC-CEEEEE
Q 025715 110 VVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEG-GKFIAK 166 (249)
Q Consensus 110 ~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~g-G~lv~k 166 (249)
.+.+... +.+|+|+- +.|. . ..+..+.+.+++| |++++-
T Consensus 247 ~v~~~~~-~g~d~vid-----~~G~----~--------~~~~~~~~~~~~~~G~~v~~ 286 (368)
T TIGR02818 247 VIVEITD-GGVDYSFE-----CIGN----V--------NVMRAALECCHKGWGESIII 286 (368)
T ss_pred HHHHHhC-CCCCEEEE-----CCCC----H--------HHHHHHHHHhhcCCCeEEEE
Confidence 2322223 36898884 2221 0 2456677889886 998864
No 405
>PRK07814 short chain dehydrogenase; Provisional
Probab=62.79 E-value=93 Score=26.20 Aligned_cols=76 Identities=9% Similarity=-0.053 Sum_probs=50.5
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC------C----CCCceEeecCCCChhhHHH
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------P----IEGVIQVQGDITNARTAEV 110 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~------~----~~~v~~~~gDi~~~~~~~~ 110 (249)
+++++|=.|+ +|+...++++.+.. .+.+|+.++.++.. . -.++.++..|+++.+....
T Consensus 9 ~~~~vlItGa-sggIG~~~a~~l~~-----------~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~ 76 (263)
T PRK07814 9 DDQVAVVTGA-GRGLGAAIALAFAE-----------AGADVLIAARTESQLDEVAEQIRAAGRRAHVVAADLAHPEATAG 76 (263)
T ss_pred CCCEEEEECC-CChHHHHHHHHHHH-----------CCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHH
Confidence 4678888885 77788887776642 24688888887532 0 1246778899999876554
Q ss_pred HHHhcC--CCcccEEEeCCC
Q 025715 111 VIRHFD--GCKADLVVCDGA 128 (249)
Q Consensus 111 i~~~~~--~~~~DlVlsD~~ 128 (249)
+.+... -+.+|.|+....
T Consensus 77 ~~~~~~~~~~~id~vi~~Ag 96 (263)
T PRK07814 77 LAGQAVEAFGRLDIVVNNVG 96 (263)
T ss_pred HHHHHHHHcCCCCEEEECCC
Confidence 433221 146999998864
No 406
>PLN02253 xanthoxin dehydrogenase
Probab=62.55 E-value=97 Score=26.30 Aligned_cols=76 Identities=13% Similarity=0.048 Sum_probs=49.7
Q ss_pred CCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC------CC---CCceEeecCCCChhhHHHHH
Q 025715 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PI---EGVIQVQGDITNARTAEVVI 112 (249)
Q Consensus 42 g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~------~~---~~v~~~~gDi~~~~~~~~i~ 112 (249)
++++|=.| |.|++...+++.+.. .+..|+.+|.++.. .+ .++.++++|+++.+......
T Consensus 18 ~k~~lItG-as~gIG~~la~~l~~-----------~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~ 85 (280)
T PLN02253 18 GKVALVTG-GATGIGESIVRLFHK-----------HGAKVCIVDLQDDLGQNVCDSLGGEPNVCFFHCDVTVEDDVSRAV 85 (280)
T ss_pred CCEEEEEC-CCchHHHHHHHHHHH-----------cCCEEEEEeCCHHHHHHHHHHhcCCCceEEEEeecCCHHHHHHHH
Confidence 56788888 567788888776642 23688888876421 11 24678899999987654433
Q ss_pred HhcC--CCcccEEEeCCCC
Q 025715 113 RHFD--GCKADLVVCDGAP 129 (249)
Q Consensus 113 ~~~~--~~~~DlVlsD~~~ 129 (249)
+.+. -+.+|.|+.+...
T Consensus 86 ~~~~~~~g~id~li~~Ag~ 104 (280)
T PLN02253 86 DFTVDKFGTLDIMVNNAGL 104 (280)
T ss_pred HHHHHHhCCCCEEEECCCc
Confidence 3221 1469999988653
No 407
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=62.36 E-value=66 Score=28.16 Aligned_cols=95 Identities=16% Similarity=0.201 Sum_probs=50.2
Q ss_pred ccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-C-C--CCc-eEeecCCCChhhHHHHHH
Q 025715 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-P-I--EGV-IQVQGDITNARTAEVVIR 113 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-~-~--~~v-~~~~gDi~~~~~~~~i~~ 113 (249)
+++|.+||-.|+ |+..+.+.+.... .+.+|+++..++.. . + .+. +.+ |..+.+....+.+
T Consensus 157 l~~g~~vLI~g~--g~vG~~a~~lA~~-----------~g~~v~~~~~s~~~~~~~~~~g~~~v~--~~~~~~~~~~l~~ 221 (337)
T cd08261 157 VTAGDTVLVVGA--GPIGLGVIQVAKA-----------RGARVIVVDIDDERLEFARELGADDTI--NVGDEDVAARLRE 221 (337)
T ss_pred CCCCCEEEEECC--CHHHHHHHHHHHH-----------cCCeEEEECCCHHHHHHHHHhCCCEEe--cCcccCHHHHHHH
Confidence 467889999964 5555544332210 12577777555421 0 0 111 112 2222222233443
Q ss_pred hcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEE
Q 025715 114 HFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIA 165 (249)
Q Consensus 114 ~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~ 165 (249)
...+..+|+|+... |. . ..+..+.+.|+++|+++.
T Consensus 222 ~~~~~~vd~vld~~-----g~----~--------~~~~~~~~~l~~~G~~i~ 256 (337)
T cd08261 222 LTDGEGADVVIDAT-----GN----P--------ASMEEAVELVAHGGRVVL 256 (337)
T ss_pred HhCCCCCCEEEECC-----CC----H--------HHHHHHHHHHhcCCEEEE
Confidence 34445699998632 11 0 235567889999999885
No 408
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=62.07 E-value=31 Score=31.14 Aligned_cols=96 Identities=16% Similarity=0.168 Sum_probs=53.9
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCCC----CCc-eEee-cCCCChhhHHHHHH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPI----EGV-IQVQ-GDITNARTAEVVIR 113 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~~----~~v-~~~~-gDi~~~~~~~~i~~ 113 (249)
++|.++.=.|.|.=|.+...--+.. ..++|+|||+++.+-- -|+ .+++ .|..+ ..++...
T Consensus 191 ~~GstvAVfGLG~VGLav~~Gaka~------------GAsrIIgvDiN~~Kf~~ak~fGaTe~iNp~d~~~--~i~evi~ 256 (375)
T KOG0022|consen 191 EPGSTVAVFGLGGVGLAVAMGAKAA------------GASRIIGVDINPDKFEKAKEFGATEFINPKDLKK--PIQEVII 256 (375)
T ss_pred CCCCEEEEEecchHHHHHHHhHHhc------------CcccEEEEecCHHHHHHHHhcCcceecChhhccc--cHHHHHH
Confidence 5677777777766665555433433 3579999999985411 122 1221 14433 2333333
Q ss_pred hcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCC-CEEEEE
Q 025715 114 HFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEG-GKFIAK 166 (249)
Q Consensus 114 ~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~g-G~lv~k 166 (249)
.+-++.+|.-+ .+.|. . ..+..|+..-++| |.-|+-
T Consensus 257 EmTdgGvDysf-----Ec~G~--~----------~~m~~al~s~h~GwG~sv~i 293 (375)
T KOG0022|consen 257 EMTDGGVDYSF-----ECIGN--V----------STMRAALESCHKGWGKSVVI 293 (375)
T ss_pred HHhcCCceEEE-----EecCC--H----------HHHHHHHHHhhcCCCeEEEE
Confidence 34456677654 34442 1 3456677777788 877763
No 409
>PF06016 Reovirus_L2: Reovirus core-spike protein lambda-2 (L2); InterPro: IPR010311 This family consists of several Reovirus core-spike protein lambda-2 (L2) sequences. The reovirus L2 genome segment encodes the core spike protein lambda-2, which mediates enzymatic reactions in 5' capping of the viral plus-strand transcripts [].; GO: 0004482 mRNA (guanine-N7-)-methyltransferase activity, 0004484 mRNA guanylyltransferase activity, 0005524 ATP binding, 0006370 mRNA capping, 0019028 viral capsid; PDB: 1EJ6_A 3IYL_W 3K1Q_A.
Probab=61.80 E-value=17 Score=38.31 Aligned_cols=65 Identities=17% Similarity=0.158 Sum_probs=38.6
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCCC-----CCceEeecCCCChhhHHHHHHhc
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPI-----EGVIQVQGDITNARTAEVVIRHF 115 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~~-----~~v~~~~gDi~~~~~~~~i~~~~ 115 (249)
.+..+||||+||=. .+++.++ ++.-|+-||..|.... ..-+++++|...... +
T Consensus 822 ~~~~~lDLGTGPE~---RiLsliP------------~~~pvtmvD~RP~ae~m~~w~t~T~y~~~DYl~~~~-------~ 879 (1289)
T PF06016_consen 822 DPDHWLDLGTGPEC---RILSLIP------------PDTPVTMVDTRPFAEPMNCWNTQTQYIQADYLSDAW-------W 879 (1289)
T ss_dssp CC-CEEEET--TT----CHHHCS-------------TTSEEEEEESS--SSSCCCCSTTEEEEES-TTSCCG-------G
T ss_pred CcceEEEccCCccc---eeeeccC------------CCCceEEEecCCcccccchhhhcceeeeecccccee-------E
Confidence 36899999999987 4455666 5689999999986532 234678899877543 3
Q ss_pred CCCcccEEEeCC
Q 025715 116 DGCKADLVVCDG 127 (249)
Q Consensus 116 ~~~~~DlVlsD~ 127 (249)
....+|.|.|-.
T Consensus 880 ~~~~~D~vtail 891 (1289)
T PF06016_consen 880 NGTPFDAVTAIL 891 (1289)
T ss_dssp CC---SEEEECT
T ss_pred ecCCCCEEEEEe
Confidence 456788888864
No 410
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=61.44 E-value=7.9 Score=32.42 Aligned_cols=87 Identities=21% Similarity=0.254 Sum_probs=50.5
Q ss_pred EEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------C-CCCceEeecCCCChhhHHHHH
Q 025715 45 VVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------P-IEGVIQVQGDITNARTAEVVI 112 (249)
Q Consensus 45 vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~-~~~v~~~~gDi~~~~~~~~i~ 112 (249)
|.|+||=-|..+.+|.++.. ..+++|+|+++-. . ...++...||-.+.
T Consensus 1 vaDIGtDHgyLpi~L~~~~~-------------~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~------- 60 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGK-------------APKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEV------- 60 (205)
T ss_dssp EEEET-STTHHHHHHHHTTS-------------EEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG-------
T ss_pred CceeccchhHHHHHHHhcCC-------------CCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccc-------
Confidence 68999999999999998643 3589999999721 1 13466777774331
Q ss_pred HhcCCC-cccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEE
Q 025715 113 RHFDGC-KADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (249)
Q Consensus 113 ~~~~~~-~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k 166 (249)
+..+ .+|.|+--|. . -.++..++......++..-.|++.
T Consensus 61 --l~~~e~~d~ivIAGM---G----------G~lI~~ILe~~~~~~~~~~~lILq 100 (205)
T PF04816_consen 61 --LKPGEDVDTIVIAGM---G----------GELIIEILEAGPEKLSSAKRLILQ 100 (205)
T ss_dssp ----GGG---EEEEEEE--------------HHHHHHHHHHTGGGGTT--EEEEE
T ss_pred --cCCCCCCCEEEEecC---C----------HHHHHHHHHhhHHHhccCCeEEEe
Confidence 1222 3676654321 1 123456677777777766677763
No 411
>PRK12829 short chain dehydrogenase; Provisional
Probab=61.36 E-value=29 Score=29.03 Aligned_cols=77 Identities=14% Similarity=0.081 Sum_probs=50.8
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC------CCC--CceEeecCCCChhhHHHHH
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PIE--GVIQVQGDITNARTAEVVI 112 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~------~~~--~v~~~~gDi~~~~~~~~i~ 112 (249)
++.++|=.|+. |+....+++++-. ....|+.++.++.. ..+ ++.++.+|+++.+.+....
T Consensus 10 ~~~~vlItGa~-g~iG~~~a~~L~~-----------~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 77 (264)
T PRK12829 10 DGLRVLVTGGA-SGIGRAIAEAFAE-----------AGARVHVCDVSEAALAATAARLPGAKVTATVADVADPAQVERVF 77 (264)
T ss_pred CCCEEEEeCCC-CcHHHHHHHHHHH-----------CCCEEEEEeCCHHHHHHHHHHHhcCceEEEEccCCCHHHHHHHH
Confidence 55789988875 7788887776642 23578888886532 112 3477889999987655443
Q ss_pred HhcC--CCcccEEEeCCCC
Q 025715 113 RHFD--GCKADLVVCDGAP 129 (249)
Q Consensus 113 ~~~~--~~~~DlVlsD~~~ 129 (249)
+... -+.+|.|+.....
T Consensus 78 ~~~~~~~~~~d~vi~~ag~ 96 (264)
T PRK12829 78 DTAVERFGGLDVLVNNAGI 96 (264)
T ss_pred HHHHHHhCCCCEEEECCCC
Confidence 3221 1469999988653
No 412
>PRK07576 short chain dehydrogenase; Provisional
Probab=61.35 E-value=1e+02 Score=26.09 Aligned_cols=76 Identities=12% Similarity=0.079 Sum_probs=48.7
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC------CC----CCceEeecCCCChhhHHH
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PI----EGVIQVQGDITNARTAEV 110 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~------~~----~~v~~~~gDi~~~~~~~~ 110 (249)
++.++|=.| |+|+....+++.+.. .+..|+.++.++.. .+ .++.++..|+++.+....
T Consensus 8 ~~k~ilItG-asggIG~~la~~l~~-----------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~ 75 (264)
T PRK07576 8 AGKNVVVVG-GTSGINLGIAQAFAR-----------AGANVAVASRSQEKVDAAVAQLQQAGPEGLGVSADVRDYAAVEA 75 (264)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHH-----------CCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEECCCCCHHHHHH
Confidence 456888888 577777777766541 24689999886521 01 245677899998775554
Q ss_pred HHHhcC--CCcccEEEeCCC
Q 025715 111 VIRHFD--GCKADLVVCDGA 128 (249)
Q Consensus 111 i~~~~~--~~~~DlVlsD~~ 128 (249)
..+... .+.+|.|+++..
T Consensus 76 ~~~~~~~~~~~iD~vi~~ag 95 (264)
T PRK07576 76 AFAQIADEFGPIDVLVSGAA 95 (264)
T ss_pred HHHHHHHHcCCCCEEEECCC
Confidence 433321 146899998764
No 413
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=61.31 E-value=30 Score=31.40 Aligned_cols=91 Identities=15% Similarity=0.062 Sum_probs=48.9
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC--C---CCCceEeecCCCChhhHHHHHHh
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--P---IEGVIQVQGDITNARTAEVVIRH 114 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~--~---~~~v~~~~gDi~~~~~~~~i~~~ 114 (249)
++|.+||-.|+ |+....+.+.... ...+|++++.++.+ . --++..+ -|..+. ..+.+.
T Consensus 177 ~~g~~VlV~G~--G~vG~~avq~Ak~-----------~Ga~Vi~~~~~~~~~~~~a~~lGa~~~-i~~~~~---~~v~~~ 239 (375)
T PLN02178 177 ESGKRLGVNGL--GGLGHIAVKIGKA-----------FGLRVTVISRSSEKEREAIDRLGADSF-LVTTDS---QKMKEA 239 (375)
T ss_pred CCCCEEEEEcc--cHHHHHHHHHHHH-----------cCCeEEEEeCChHHhHHHHHhCCCcEE-EcCcCH---HHHHHh
Confidence 57889998875 5666654432210 12578888876422 1 1133211 122221 223322
Q ss_pred cCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEE
Q 025715 115 FDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (249)
Q Consensus 115 ~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k 166 (249)
. +.+|+|+- +.|. . ..+..+.+.|++||+++.-
T Consensus 240 ~--~~~D~vid-----~~G~---~---------~~~~~~~~~l~~~G~iv~v 272 (375)
T PLN02178 240 V--GTMDFIID-----TVSA---E---------HALLPLFSLLKVSGKLVAL 272 (375)
T ss_pred h--CCCcEEEE-----CCCc---H---------HHHHHHHHhhcCCCEEEEE
Confidence 2 25888884 2221 0 2456778899999999863
No 414
>PRK06484 short chain dehydrogenase; Validated
Probab=61.30 E-value=1.4e+02 Score=28.10 Aligned_cols=76 Identities=14% Similarity=0.179 Sum_probs=47.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC------CC-CCceEeecCCCChhhHHHHHHh
Q 025715 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PI-EGVIQVQGDITNARTAEVVIRH 114 (249)
Q Consensus 42 g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~------~~-~~v~~~~gDi~~~~~~~~i~~~ 114 (249)
++++|=.|+ .|++...+++.+.. ...+|+.++.++.. .+ ..+..+..|+++.+..+.+.+.
T Consensus 269 ~k~~lItGa-s~gIG~~~a~~l~~-----------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 336 (520)
T PRK06484 269 PRVVAITGG-ARGIGRAVADRFAA-----------AGDRLLIIDRDAEGAKKLAEALGDEHLSVQADITDEAAVESAFAQ 336 (520)
T ss_pred CCEEEEECC-CcHHHHHHHHHHHH-----------CCCEEEEEeCCHHHHHHHHHHhCCceeEEEccCCCHHHHHHHHHH
Confidence 456666665 56677777776642 23588888886532 11 2345678999998765554433
Q ss_pred cC--CCcccEEEeCCCC
Q 025715 115 FD--GCKADLVVCDGAP 129 (249)
Q Consensus 115 ~~--~~~~DlVlsD~~~ 129 (249)
.. -+.+|+++.+...
T Consensus 337 ~~~~~g~id~li~nAg~ 353 (520)
T PRK06484 337 IQARWGRLDVLVNNAGI 353 (520)
T ss_pred HHHHcCCCCEEEECCCC
Confidence 21 1469999998653
No 415
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=61.18 E-value=1.2e+02 Score=26.85 Aligned_cols=69 Identities=23% Similarity=0.186 Sum_probs=43.1
Q ss_pred eEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----CCCCceEeecCCC-ChhhHHHHHHhcCC
Q 025715 44 RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----PIEGVIQVQGDIT-NARTAEVVIRHFDG 117 (249)
Q Consensus 44 ~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----~~~~v~~~~gDi~-~~~~~~~i~~~~~~ 117 (249)
+||=.| |+|....++++.+-.. .+..|+++|.+... ..++++++.+|+. +......+ +.
T Consensus 3 ~ilVtG-atGfiGs~l~~~L~~~----------~~~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~---~~- 67 (347)
T PRK11908 3 KVLILG-VNGFIGHHLSKRILET----------TDWEVYGMDMQTDRLGDLVNHPRMHFFEGDITINKEWIEYH---VK- 67 (347)
T ss_pred EEEEEC-CCcHHHHHHHHHHHhC----------CCCeEEEEeCcHHHHHHhccCCCeEEEeCCCCCCHHHHHHH---Hc-
Confidence 455444 6888999888876310 12589999976421 1246888999997 44332222 22
Q ss_pred CcccEEEeCCC
Q 025715 118 CKADLVVCDGA 128 (249)
Q Consensus 118 ~~~DlVlsD~~ 128 (249)
.+|.|+.-++
T Consensus 68 -~~d~ViH~aa 77 (347)
T PRK11908 68 -KCDVILPLVA 77 (347)
T ss_pred -CCCEEEECcc
Confidence 4899987543
No 416
>PRK07985 oxidoreductase; Provisional
Probab=61.16 E-value=1.1e+02 Score=26.50 Aligned_cols=75 Identities=8% Similarity=0.052 Sum_probs=47.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC----C----C----CCceEeecCCCChhhHH
Q 025715 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----P----I----EGVIQVQGDITNARTAE 109 (249)
Q Consensus 42 g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~----~----~----~~v~~~~gDi~~~~~~~ 109 (249)
++++|=.|+ +|++...+++.+.. .+..|+.++..... . + ..+.++.+|+++.+...
T Consensus 49 ~k~vlITGa-s~gIG~aia~~L~~-----------~G~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~ 116 (294)
T PRK07985 49 DRKALVTGG-DSGIGRAAAIAYAR-----------EGADVAISYLPVEEEDAQDVKKIIEECGRKAVLLPGDLSDEKFAR 116 (294)
T ss_pred CCEEEEECC-CCcHHHHHHHHHHH-----------CCCEEEEecCCcchhhHHHHHHHHHHcCCeEEEEEccCCCHHHHH
Confidence 468888885 57778887776642 23577777654321 0 1 13567889999987655
Q ss_pred HHHHhcC--CCcccEEEeCCC
Q 025715 110 VVIRHFD--GCKADLVVCDGA 128 (249)
Q Consensus 110 ~i~~~~~--~~~~DlVlsD~~ 128 (249)
.+.+... -+.+|.++.+..
T Consensus 117 ~~~~~~~~~~g~id~lv~~Ag 137 (294)
T PRK07985 117 SLVHEAHKALGGLDIMALVAG 137 (294)
T ss_pred HHHHHHHHHhCCCCEEEECCC
Confidence 5433221 146899988764
No 417
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=60.28 E-value=1e+02 Score=25.75 Aligned_cols=74 Identities=16% Similarity=0.138 Sum_probs=48.7
Q ss_pred CeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC------C------CCceEeecCCCChhhHHH
Q 025715 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP------I------EGVIQVQGDITNARTAEV 110 (249)
Q Consensus 43 ~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~------~------~~v~~~~gDi~~~~~~~~ 110 (249)
.++|=.| |+|+....+++.+.. .+..|+.+|.++... + ..+.++.+|+++.+....
T Consensus 3 k~ilItG-~~~~IG~~la~~l~~-----------~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~ 70 (259)
T PRK12384 3 QVAVVIG-GGQTLGAFLCHGLAE-----------EGYRVAVADINSEKAANVAQEINAEYGEGMAYGFGADATSEQSVLA 70 (259)
T ss_pred CEEEEEC-CCcHHHHHHHHHHHH-----------CCCEEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCCHHHHHH
Confidence 5678888 467788887776642 246888898875320 1 246778999999776554
Q ss_pred HHHhcC--CCcccEEEeCCC
Q 025715 111 VIRHFD--GCKADLVVCDGA 128 (249)
Q Consensus 111 i~~~~~--~~~~DlVlsD~~ 128 (249)
+.+... -+..|.|+.+..
T Consensus 71 ~~~~~~~~~~~id~vv~~ag 90 (259)
T PRK12384 71 LSRGVDEIFGRVDLLVYNAG 90 (259)
T ss_pred HHHHHHHHcCCCCEEEECCC
Confidence 433321 146899998864
No 418
>PRK06114 short chain dehydrogenase; Provisional
Probab=60.22 E-value=50 Score=27.69 Aligned_cols=76 Identities=16% Similarity=0.077 Sum_probs=49.3
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC-------C----CCceEeecCCCChhhHH
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP-------I----EGVIQVQGDITNARTAE 109 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~-------~----~~v~~~~gDi~~~~~~~ 109 (249)
.+.++|=.| |+|+....+++++.. ...+|+.++.+.... + .++.++..|+++.+...
T Consensus 7 ~~k~~lVtG-~s~gIG~~ia~~l~~-----------~G~~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~ 74 (254)
T PRK06114 7 DGQVAFVTG-AGSGIGQRIAIGLAQ-----------AGADVALFDLRTDDGLAETAEHIEAAGRRAIQIAADVTSKADLR 74 (254)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHH-----------CCCEEEEEeCCcchHHHHHHHHHHhcCCceEEEEcCCCCHHHHH
Confidence 456788777 667788888877642 235888888764211 1 24667889999987655
Q ss_pred HHHHhcC--CCcccEEEeCCC
Q 025715 110 VVIRHFD--GCKADLVVCDGA 128 (249)
Q Consensus 110 ~i~~~~~--~~~~DlVlsD~~ 128 (249)
...+... -+++|.++.+..
T Consensus 75 ~~~~~~~~~~g~id~li~~ag 95 (254)
T PRK06114 75 AAVARTEAELGALTLAVNAAG 95 (254)
T ss_pred HHHHHHHHHcCCCCEEEECCC
Confidence 4433221 146899998875
No 419
>PRK08251 short chain dehydrogenase; Provisional
Probab=59.86 E-value=33 Score=28.54 Aligned_cols=76 Identities=11% Similarity=0.012 Sum_probs=49.7
Q ss_pred CCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC----------CC--CCceEeecCCCChhhHH
Q 025715 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------PI--EGVIQVQGDITNARTAE 109 (249)
Q Consensus 42 g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~----------~~--~~v~~~~gDi~~~~~~~ 109 (249)
+.++|=.| |+|+....+++++.. ...+|+.++.++.. .. .++.++.+|+++.+...
T Consensus 2 ~k~vlItG-as~giG~~la~~l~~-----------~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~ 69 (248)
T PRK08251 2 RQKILITG-ASSGLGAGMAREFAA-----------KGRDLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVF 69 (248)
T ss_pred CCEEEEEC-CCCHHHHHHHHHHHH-----------cCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHH
Confidence 35677777 578888888887642 23588888876531 01 24677899999987655
Q ss_pred HHHHhcC--CCcccEEEeCCCC
Q 025715 110 VVIRHFD--GCKADLVVCDGAP 129 (249)
Q Consensus 110 ~i~~~~~--~~~~DlVlsD~~~ 129 (249)
...+.+. -+.+|.|+.+...
T Consensus 70 ~~~~~~~~~~~~id~vi~~ag~ 91 (248)
T PRK08251 70 EVFAEFRDELGGLDRVIVNAGI 91 (248)
T ss_pred HHHHHHHHHcCCCCEEEECCCc
Confidence 4433321 1468999988653
No 420
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=59.33 E-value=1.2e+02 Score=26.23 Aligned_cols=68 Identities=15% Similarity=0.087 Sum_probs=44.1
Q ss_pred eEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC--C--CCceEeecCCCChhhHHHHHHhcCCCc
Q 025715 44 RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP--I--EGVIQVQGDITNARTAEVVIRHFDGCK 119 (249)
Q Consensus 44 ~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~--~--~~v~~~~gDi~~~~~~~~i~~~~~~~~ 119 (249)
+||=.| |+|....++++.+-. .+..|++++..+... + .+++++.+|+.+.+..+.. +. .
T Consensus 2 ~vlItG-~~G~iG~~l~~~L~~-----------~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~l~~~---~~--~ 64 (328)
T TIGR03466 2 KVLVTG-ATGFVGSAVVRLLLE-----------QGEEVRVLVRPTSDRRNLEGLDVEIVEGDLRDPASLRKA---VA--G 64 (328)
T ss_pred eEEEEC-CccchhHHHHHHHHH-----------CCCEEEEEEecCccccccccCCceEEEeeCCCHHHHHHH---Hh--C
Confidence 344333 678888888776642 235899999876431 2 2678889999997654333 32 4
Q ss_pred ccEEEeCCC
Q 025715 120 ADLVVCDGA 128 (249)
Q Consensus 120 ~DlVlsD~~ 128 (249)
+|.|+...+
T Consensus 65 ~d~vi~~a~ 73 (328)
T TIGR03466 65 CRALFHVAA 73 (328)
T ss_pred CCEEEEece
Confidence 788887653
No 421
>PRK08263 short chain dehydrogenase; Provisional
Probab=59.15 E-value=1.1e+02 Score=25.91 Aligned_cols=76 Identities=12% Similarity=0.040 Sum_probs=48.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC------CC-CCceEeecCCCChhhHHHHHHh
Q 025715 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PI-EGVIQVQGDITNARTAEVVIRH 114 (249)
Q Consensus 42 g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~------~~-~~v~~~~gDi~~~~~~~~i~~~ 114 (249)
+.+||=.| |+|+....+++.+.. .+..|+.++.++.. .. ..+..++.|+++.+......+.
T Consensus 3 ~k~vlItG-asg~iG~~~a~~l~~-----------~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 70 (275)
T PRK08263 3 EKVWFITG-ASRGFGRAWTEAALE-----------RGDRVVATARDTATLADLAEKYGDRLLPLALDVTDRAAVFAAVET 70 (275)
T ss_pred CCEEEEeC-CCChHHHHHHHHHHH-----------CCCEEEEEECCHHHHHHHHHhccCCeeEEEccCCCHHHHHHHHHH
Confidence 34677777 578888888776642 23578888876532 11 2466778999997765443332
Q ss_pred cC--CCcccEEEeCCCC
Q 025715 115 FD--GCKADLVVCDGAP 129 (249)
Q Consensus 115 ~~--~~~~DlVlsD~~~ 129 (249)
.. -+.+|.|++....
T Consensus 71 ~~~~~~~~d~vi~~ag~ 87 (275)
T PRK08263 71 AVEHFGRLDIVVNNAGY 87 (275)
T ss_pred HHHHcCCCCEEEECCCC
Confidence 11 1468999888643
No 422
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=59.12 E-value=36 Score=30.95 Aligned_cols=97 Identities=15% Similarity=0.132 Sum_probs=55.1
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC----CCCc-eEeecCCCCh-hhHHHHHH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----IEGV-IQVQGDITNA-RTAEVVIR 113 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~----~~~v-~~~~gDi~~~-~~~~~i~~ 113 (249)
++|.+|.=.|||-=+.+.....+.. ...+|+|+|+++.+. --|. ++++. .+. +..+.+.
T Consensus 184 ~~G~tvaV~GlGgVGlaaI~gA~~a------------gA~~IiAvD~~~~Kl~~A~~fGAT~~vn~--~~~~~vv~~i~- 248 (366)
T COG1062 184 EPGDTVAVFGLGGVGLAAIQGAKAA------------GAGRIIAVDINPEKLELAKKFGATHFVNP--KEVDDVVEAIV- 248 (366)
T ss_pred CCCCeEEEEeccHhHHHHHHHHHHc------------CCceEEEEeCCHHHHHHHHhcCCceeecc--hhhhhHHHHHH-
Confidence 5678888888766555554433433 357999999998652 1232 22211 111 2222232
Q ss_pred hcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEe
Q 025715 114 HFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (249)
Q Consensus 114 ~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~ 168 (249)
.+.++..|.++ ++.|.. ..++.++..+.++|..++.=.
T Consensus 249 ~~T~gG~d~~~-----e~~G~~------------~~~~~al~~~~~~G~~v~iGv 286 (366)
T COG1062 249 ELTDGGADYAF-----ECVGNV------------EVMRQALEATHRGGTSVIIGV 286 (366)
T ss_pred HhcCCCCCEEE-----EccCCH------------HHHHHHHHHHhcCCeEEEEec
Confidence 23334677764 344431 256777888888999987544
No 423
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=58.75 E-value=64 Score=28.29 Aligned_cols=92 Identities=22% Similarity=0.224 Sum_probs=50.0
Q ss_pred ccCCCeEEEEcCCCChHHHHH---HHHhcCCCCCCCCCCCCCCCe-EEEecCCCCCC--C--CCc-eEeecCCCChhhHH
Q 025715 39 FEGVKRVVDLCAAPGSWSQVL---SRKLYLPAKLSPDSREGDLPL-IVAIDLQPMAP--I--EGV-IQVQGDITNARTAE 109 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~l---~~~~~~~~~~~~~~~~~~~~~-vvavDi~~~~~--~--~~v-~~~~gDi~~~~~~~ 109 (249)
++++.+||-.|+ |+....+ ++.++ .. |++++.++... + .++ ..+. ..+.. ..
T Consensus 157 ~~~~~~vlI~g~--g~~g~~~~~lA~~~G--------------~~~v~~~~~~~~~~~~l~~~g~~~~~~--~~~~~-~~ 217 (343)
T cd08236 157 ITLGDTVVVIGA--GTIGLLAIQWLKILG--------------AKRVIAVDIDDEKLAVARELGADDTIN--PKEED-VE 217 (343)
T ss_pred CCCCCEEEEECC--CHHHHHHHHHHHHcC--------------CCEEEEEcCCHHHHHHHHHcCCCEEec--Ccccc-HH
Confidence 467889999864 5555544 44433 33 77776654210 1 122 1121 12222 33
Q ss_pred HHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEE
Q 025715 110 VVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (249)
Q Consensus 110 ~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k 166 (249)
++.+...+..+|+|+.- .|. ...+..+.+.|+++|+++.-
T Consensus 218 ~~~~~~~~~~~d~vld~-----~g~------------~~~~~~~~~~l~~~G~~v~~ 257 (343)
T cd08236 218 KVRELTEGRGADLVIEA-----AGS------------PATIEQALALARPGGKVVLV 257 (343)
T ss_pred HHHHHhCCCCCCEEEEC-----CCC------------HHHHHHHHHHhhcCCEEEEE
Confidence 34444444569999853 111 02355678899999998863
No 424
>KOG2782 consensus Putative SAM dependent methyltransferases [General function prediction only]
Probab=58.62 E-value=4.5 Score=34.44 Aligned_cols=74 Identities=16% Similarity=0.178 Sum_probs=50.0
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC----------C-CCceEeecCCCChhhH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----------I-EGVIQVQGDITNARTA 108 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~----------~-~~v~~~~gDi~~~~~~ 108 (249)
.+|..++|+--|.||.+..+.+..+ +.++++.|..|.+. + +.+..+-|++.+.+.+
T Consensus 42 v~g~sf~DmTfGagGHt~~ilqk~s-------------e~k~yalDrDP~A~~La~~~s~el~~~~l~a~Lg~Fs~~~~l 108 (303)
T KOG2782|consen 42 VRGRSFVDMTFGAGGHTSSILQKHS-------------ELKNYALDRDPVARKLAHFHSDELMHPTLKAVLGNFSYIKSL 108 (303)
T ss_pred CCCceEEEEeccCCcchHHHHHhCc-------------HhhhhhhccChHHHHHHHHhhHhhcchhHHHHHhhhHHHHHH
Confidence 4688999999999999999998864 57899999998541 1 2233344555443221
Q ss_pred HHHHH-hcCCCcccEEEeCCC
Q 025715 109 EVVIR-HFDGCKADLVVCDGA 128 (249)
Q Consensus 109 ~~i~~-~~~~~~~DlVlsD~~ 128 (249)
+.+ .+.+.+||=|+.|..
T Consensus 109 --~~~~gl~~~~vDGiLmDlG 127 (303)
T KOG2782|consen 109 --IADTGLLDVGVDGILMDLG 127 (303)
T ss_pred --HHHhCCCcCCcceEEeecC
Confidence 111 144578888888853
No 425
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=58.01 E-value=94 Score=27.79 Aligned_cols=92 Identities=14% Similarity=0.111 Sum_probs=50.6
Q ss_pred ccCCCeEEEEcCCCChHHHHH---HHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC--C--CCce-EeecCCCChhhHHH
Q 025715 39 FEGVKRVVDLCAAPGSWSQVL---SRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP--I--EGVI-QVQGDITNARTAEV 110 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~l---~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~--~--~~v~-~~~gDi~~~~~~~~ 110 (249)
++++.+||=.|+ |+....+ ++..+ ...|+++|.++.+. . -++. ++. ..+......
T Consensus 184 ~~~g~~vlI~g~--g~vG~~~~~la~~~G-------------~~~v~~~~~~~~k~~~~~~~g~~~~i~--~~~~~~~~~ 246 (365)
T cd08278 184 PRPGSSIAVFGA--GAVGLAAVMAAKIAG-------------CTTIIAVDIVDSRLELAKELGATHVIN--PKEEDLVAA 246 (365)
T ss_pred CCCCCEEEEECC--CHHHHHHHHHHHHcC-------------CCeEEEEeCCHHHHHHHHHcCCcEEec--CCCcCHHHH
Confidence 357888888864 5555544 44443 23688998876431 0 1221 122 112222233
Q ss_pred HHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEE
Q 025715 111 VIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIA 165 (249)
Q Consensus 111 i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~ 165 (249)
+.+.. +..+|+|+-- .|. . ..+..+.+.|+++|+++.
T Consensus 247 v~~~~-~~~~d~vld~-----~g~---~---------~~~~~~~~~l~~~G~~v~ 283 (365)
T cd08278 247 IREIT-GGGVDYALDT-----TGV---P---------AVIEQAVDALAPRGTLAL 283 (365)
T ss_pred HHHHh-CCCCcEEEEC-----CCC---c---------HHHHHHHHHhccCCEEEE
Confidence 33333 4579999842 221 0 135667889999999886
No 426
>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional
Probab=57.92 E-value=75 Score=26.71 Aligned_cols=75 Identities=13% Similarity=0.086 Sum_probs=49.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC-CCCceEeecCCCChhhHHHHHHhcC--CC
Q 025715 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP-IEGVIQVQGDITNARTAEVVIRHFD--GC 118 (249)
Q Consensus 42 g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~-~~~v~~~~gDi~~~~~~~~i~~~~~--~~ 118 (249)
+.++|=.| |+|++...+++.+.. ...+|+.+|.++... ..++..+..|+++.+..+.+.+... -+
T Consensus 9 ~k~vlItG-~s~gIG~~la~~l~~-----------~G~~v~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g 76 (266)
T PRK06171 9 GKIIIVTG-GSSGIGLAIVKELLA-----------NGANVVNADIHGGDGQHENYQFVPTDVSSAEEVNHTVAEIIEKFG 76 (266)
T ss_pred CCEEEEeC-CCChHHHHHHHHHHH-----------CCCEEEEEeCCccccccCceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 45777666 556777777666531 346888888876442 2356778899999876555443321 14
Q ss_pred cccEEEeCCC
Q 025715 119 KADLVVCDGA 128 (249)
Q Consensus 119 ~~DlVlsD~~ 128 (249)
++|.|+.+..
T Consensus 77 ~id~li~~Ag 86 (266)
T PRK06171 77 RIDGLVNNAG 86 (266)
T ss_pred CCCEEEECCc
Confidence 7999998864
No 427
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=57.80 E-value=1.3e+02 Score=26.27 Aligned_cols=70 Identities=19% Similarity=0.103 Sum_probs=43.3
Q ss_pred eEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC---------C--CCCceEeecCCCChhhHHHHH
Q 025715 44 RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------P--IEGVIQVQGDITNARTAEVVI 112 (249)
Q Consensus 44 ~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~---------~--~~~v~~~~gDi~~~~~~~~i~ 112 (249)
+||=.| |+|....++++.+-. .+.+|++++..... . -.++.++.+|+++.+....+.
T Consensus 2 ~vlVtG-atG~iG~~l~~~L~~-----------~g~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~ 69 (338)
T PRK10675 2 RVLVTG-GSGYIGSHTCVQLLQ-----------NGHDVVILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALLTEIL 69 (338)
T ss_pred eEEEEC-CCChHHHHHHHHHHH-----------CCCeEEEEecCCCchHhHHHHHHHhcCCCceEEEccCCCHHHHHHHH
Confidence 455444 568888888776642 23578888753211 0 123567889999876544433
Q ss_pred HhcCCCcccEEEeCCC
Q 025715 113 RHFDGCKADLVVCDGA 128 (249)
Q Consensus 113 ~~~~~~~~DlVlsD~~ 128 (249)
....+|.|+...+
T Consensus 70 ---~~~~~d~vvh~a~ 82 (338)
T PRK10675 70 ---HDHAIDTVIHFAG 82 (338)
T ss_pred ---hcCCCCEEEECCc
Confidence 3346999988764
No 428
>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. 3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process
Probab=57.75 E-value=97 Score=26.94 Aligned_cols=65 Identities=25% Similarity=0.323 Sum_probs=42.4
Q ss_pred CCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC-------CCCceEeecCCCChhhHHHHHHhcCCCcccEE
Q 025715 51 APGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP-------IEGVIQVQGDITNARTAEVVIRHFDGCKADLV 123 (249)
Q Consensus 51 gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~-------~~~v~~~~gDi~~~~~~~~i~~~~~~~~~DlV 123 (249)
|+|....++.+.+-.. +....|.++|+.+... ....+++.+|+++.+.+... +. .+|.|
T Consensus 5 gsGflG~~iv~~Ll~~---------g~~~~Vr~~d~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~a---~~--g~d~V 70 (280)
T PF01073_consen 5 GSGFLGSHIVRQLLER---------GYIYEVRVLDRSPPPKFLKDLQKSGVKEYIQGDITDPESLEEA---LE--GVDVV 70 (280)
T ss_pred CCcHHHHHHHHHHHHC---------CCceEEEEcccccccccchhhhcccceeEEEeccccHHHHHHH---hc--CCceE
Confidence 7888888887766411 0124788889876431 22334889999998754433 33 58999
Q ss_pred EeCCCC
Q 025715 124 VCDGAP 129 (249)
Q Consensus 124 lsD~~~ 129 (249)
+.-.++
T Consensus 71 ~H~Aa~ 76 (280)
T PF01073_consen 71 FHTAAP 76 (280)
T ss_pred EEeCcc
Confidence 887764
No 429
>PRK05872 short chain dehydrogenase; Provisional
Probab=57.68 E-value=1.3e+02 Score=26.08 Aligned_cols=77 Identities=21% Similarity=0.190 Sum_probs=48.1
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC------CC---CCceEeecCCCChhhHHHH
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PI---EGVIQVQGDITNARTAEVV 111 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~------~~---~~v~~~~gDi~~~~~~~~i 111 (249)
.+.++|=.|+ +|+....+++.+.. .+.+|+.++.++.. .+ ..+..+..|+++.+.....
T Consensus 8 ~gk~vlItGa-s~gIG~~ia~~l~~-----------~G~~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~Dv~d~~~v~~~ 75 (296)
T PRK05872 8 AGKVVVVTGA-ARGIGAELARRLHA-----------RGAKLALVDLEEAELAALAAELGGDDRVLTVVADVTDLAAMQAA 75 (296)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHH-----------CCCEEEEEeCCHHHHHHHHHHhcCCCcEEEEEecCCCHHHHHHH
Confidence 4578888774 56677777776642 23578888876531 11 1234456899998765554
Q ss_pred HHhcC--CCcccEEEeCCCC
Q 025715 112 IRHFD--GCKADLVVCDGAP 129 (249)
Q Consensus 112 ~~~~~--~~~~DlVlsD~~~ 129 (249)
.+.+. .+.+|+|+.+...
T Consensus 76 ~~~~~~~~g~id~vI~nAG~ 95 (296)
T PRK05872 76 AEEAVERFGGIDVVVANAGI 95 (296)
T ss_pred HHHHHHHcCCCCEEEECCCc
Confidence 43321 1469999999754
No 430
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=57.29 E-value=35 Score=29.14 Aligned_cols=43 Identities=16% Similarity=0.165 Sum_probs=28.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCC
Q 025715 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM 89 (249)
Q Consensus 42 g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~ 89 (249)
..+|+++|+|.|.++..+++.+....+ +--...+++-||.+|.
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p-----~~~~~~~y~ivE~Sp~ 61 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSP-----EVYKRLRYHIVEISPY 61 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTH-----HHHTTCEEEEE-TTCC
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhCh-----hhhhcceEEEEcCCHH
Confidence 369999999999999998887752110 0001357888899874
No 431
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=57.00 E-value=1.2e+02 Score=25.48 Aligned_cols=73 Identities=12% Similarity=0.088 Sum_probs=47.4
Q ss_pred eEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC---------CCCCceEeecCCCChhhHHHHHHh
Q 025715 44 RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------PIEGVIQVQGDITNARTAEVVIRH 114 (249)
Q Consensus 44 ~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~---------~~~~v~~~~gDi~~~~~~~~i~~~ 114 (249)
++|=.|++ |+....+++++.. .+.+|+.++.++.. ...++.+++.|+++.+....+.+.
T Consensus 2 ~vlItGas-~gIG~aia~~l~~-----------~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~d~~~~~~~~~~ 69 (259)
T PRK08340 2 NVLVTASS-RGIGFNVARELLK-----------KGARVVISSRNEENLEKALKELKEYGEVYAVKADLSDKDDLKNLVKE 69 (259)
T ss_pred eEEEEcCC-cHHHHHHHHHHHH-----------cCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEcCCCCHHHHHHHHHH
Confidence 56777755 6677777766642 24688888877532 113567789999998766554433
Q ss_pred cC--CCcccEEEeCCC
Q 025715 115 FD--GCKADLVVCDGA 128 (249)
Q Consensus 115 ~~--~~~~DlVlsD~~ 128 (249)
.. .+.+|+++.+..
T Consensus 70 ~~~~~g~id~li~naG 85 (259)
T PRK08340 70 AWELLGGIDALVWNAG 85 (259)
T ss_pred HHHhcCCCCEEEECCC
Confidence 21 247999998865
No 432
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=56.99 E-value=13 Score=33.16 Aligned_cols=69 Identities=20% Similarity=0.268 Sum_probs=34.7
Q ss_pred CCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC------------CC-CCceEeec----CCCC
Q 025715 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------------PI-EGVIQVQG----DITN 104 (249)
Q Consensus 42 g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~------------~~-~~v~~~~g----Di~~ 104 (249)
.-++||+|+|.-..--.|..+.. +..++|.|+++.. .+ ..++.+.. ++..
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~-------------~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~ 169 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLY-------------GWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFD 169 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH---------------EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTT
T ss_pred ceEeecCCccHHHHHHHHhhhhc-------------CCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccch
Confidence 45899999999988766665553 4799999998742 12 23444322 2222
Q ss_pred hhhHHHHHHhcCCCcccEEEeCCCCC
Q 025715 105 ARTAEVVIRHFDGCKADLVVCDGAPD 130 (249)
Q Consensus 105 ~~~~~~i~~~~~~~~~DlVlsD~~~~ 130 (249)
. +. ...+.||+.+||+++.
T Consensus 170 ~-----i~--~~~e~~dftmCNPPFy 188 (299)
T PF05971_consen 170 G-----II--QPNERFDFTMCNPPFY 188 (299)
T ss_dssp T-----ST--T--S-EEEEEE-----
T ss_pred h-----hh--cccceeeEEecCCccc
Confidence 1 11 1236899999998764
No 433
>PRK06500 short chain dehydrogenase; Provisional
Probab=56.61 E-value=1.1e+02 Score=25.15 Aligned_cols=76 Identities=9% Similarity=0.120 Sum_probs=46.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC------CC-CCceEeecCCCChhhHHHHHHh
Q 025715 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PI-EGVIQVQGDITNARTAEVVIRH 114 (249)
Q Consensus 42 g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~------~~-~~v~~~~gDi~~~~~~~~i~~~ 114 (249)
+.++|=.|+ .|+....+++.+.. ...+|+.++.++.. .+ ..+.+++.|+.+.+....+.+.
T Consensus 6 ~k~vlItGa-sg~iG~~la~~l~~-----------~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 73 (249)
T PRK06500 6 GKTALITGG-TSGIGLETARQFLA-----------EGARVAITGRDPASLEAARAELGESALVIRADAGDVAAQKALAQA 73 (249)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHH-----------CCCEEEEecCCHHHHHHHHHHhCCceEEEEecCCCHHHHHHHHHH
Confidence 456666664 57777777776642 23588888876421 11 2456778999987655444332
Q ss_pred cC--CCcccEEEeCCCC
Q 025715 115 FD--GCKADLVVCDGAP 129 (249)
Q Consensus 115 ~~--~~~~DlVlsD~~~ 129 (249)
+. .+.+|.|+.+...
T Consensus 74 ~~~~~~~id~vi~~ag~ 90 (249)
T PRK06500 74 LAEAFGRLDAVFINAGV 90 (249)
T ss_pred HHHHhCCCCEEEECCCC
Confidence 21 1469999987643
No 434
>PRK12746 short chain dehydrogenase; Provisional
Probab=56.50 E-value=1.2e+02 Score=25.25 Aligned_cols=113 Identities=13% Similarity=0.167 Sum_probs=60.4
Q ss_pred CCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEe-cCCCCC------CC----CCceEeecCCCChhhHHH
Q 025715 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAI-DLQPMA------PI----EGVIQVQGDITNARTAEV 110 (249)
Q Consensus 42 g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvav-Di~~~~------~~----~~v~~~~gDi~~~~~~~~ 110 (249)
+.++|=.| |+|+....+++.+-. ....|+.+ ..+... .+ ..+.++.+|+++.+....
T Consensus 6 ~~~ilItG-asg~iG~~la~~l~~-----------~G~~v~i~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~i~~ 73 (254)
T PRK12746 6 GKVALVTG-ASRGIGRAIAMRLAN-----------DGALVAIHYGRNKQAADETIREIESNGGKAFLIEADLNSIDGVKK 73 (254)
T ss_pred CCEEEEeC-CCchHHHHHHHHHHH-----------CCCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCcCCHHHHHH
Confidence 46788777 478888888876641 12355443 333211 11 236678899999876544
Q ss_pred HHHhc--------CCCcccEEEeCCCCCCCC-CCCcCHHH---HHH----HHHHHHHHHHHhccCCCEEEEE
Q 025715 111 VIRHF--------DGCKADLVVCDGAPDVTG-LHDMDEFV---QSQ----LILAGLTVVTHVLKEGGKFIAK 166 (249)
Q Consensus 111 i~~~~--------~~~~~DlVlsD~~~~~~g-~~~~~~~~---~~~----l~~~~l~~a~~~Lk~gG~lv~k 166 (249)
..+.+ ..+.+|.|+........+ ..+.+... ..+ .....+..+.+.++..|.++..
T Consensus 74 ~~~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~v~~ 145 (254)
T PRK12746 74 LVEQLKNELQIRVGTSEIDILVNNAGIGTQGTIENTTEEIFDEIMAVNIKAPFFLIQQTLPLLRAEGRVINI 145 (254)
T ss_pred HHHHHHHHhccccCCCCccEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEE
Confidence 43322 124689999887532222 11222111 111 1133445555666677877763
No 435
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=56.11 E-value=9.7 Score=35.12 Aligned_cols=18 Identities=28% Similarity=0.233 Sum_probs=15.3
Q ss_pred CCeEEEEcCCCChHHHHH
Q 025715 42 VKRVVDLCAAPGSWSQVL 59 (249)
Q Consensus 42 g~~vLDLG~gpG~~s~~l 59 (249)
..+|+|+|||+|..+..+
T Consensus 64 ~~~iaDlGcs~G~ntl~~ 81 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHI 81 (386)
T ss_pred ceeEEEecCCCCccHHHH
Confidence 569999999999887654
No 436
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=55.96 E-value=1.3e+02 Score=25.69 Aligned_cols=69 Identities=17% Similarity=0.083 Sum_probs=47.6
Q ss_pred EEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCCC---CCceEeecCCCChhhHHHHHHhcCCCcc-
Q 025715 45 VVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPI---EGVIQVQGDITNARTAEVVIRHFDGCKA- 120 (249)
Q Consensus 45 vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~~---~~v~~~~gDi~~~~~~~~i~~~~~~~~~- 120 (249)
||=.|+ +|....++++++.. .+..|+++|..+.... .++.++.+|+++........ . .+
T Consensus 3 ILVtG~-tGfiG~~l~~~L~~-----------~g~~V~~~~r~~~~~~~~~~~~~~~~~d~~~~~~~~~~~---~--~~~ 65 (314)
T COG0451 3 ILVTGG-AGFIGSHLVERLLA-----------AGHDVRGLDRLRDGLDPLLSGVEFVVLDLTDRDLVDELA---K--GVP 65 (314)
T ss_pred EEEEcC-cccHHHHHHHHHHh-----------CCCeEEEEeCCCccccccccccceeeecccchHHHHHHH---h--cCC
Confidence 666676 99999999988852 2469999998775422 36788899998875433322 1 23
Q ss_pred cEEEeCCCCC
Q 025715 121 DLVVCDGAPD 130 (249)
Q Consensus 121 DlVlsD~~~~ 130 (249)
|.|+...+..
T Consensus 66 d~vih~aa~~ 75 (314)
T COG0451 66 DAVIHLAAQS 75 (314)
T ss_pred CEEEEccccC
Confidence 9998876543
No 437
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=55.79 E-value=83 Score=27.66 Aligned_cols=93 Identities=16% Similarity=0.060 Sum_probs=49.8
Q ss_pred ccCCCeEEEEcCCCChHHHH---HHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC--CC---CCce-EeecCCCChhhHH
Q 025715 39 FEGVKRVVDLCAAPGSWSQV---LSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--PI---EGVI-QVQGDITNARTAE 109 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~---l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~--~~---~~v~-~~~gDi~~~~~~~ 109 (249)
+++|.+||=.|+ +|+.... +++..+ .+|++++.++.+ .+ -|+. ++..+ .+.....
T Consensus 149 ~~~g~~VlI~Ga-~G~vG~~aiqlAk~~G--------------~~Vi~~~~~~~~~~~~~~~lGa~~vi~~~-~~~~~~~ 212 (338)
T cd08295 149 PKKGETVFVSAA-SGAVGQLVGQLAKLKG--------------CYVVGSAGSDEKVDLLKNKLGFDDAFNYK-EEPDLDA 212 (338)
T ss_pred CCCCCEEEEecC-ccHHHHHHHHHHHHcC--------------CEEEEEeCCHHHHHHHHHhcCCceeEEcC-CcccHHH
Confidence 478899997775 3555554 444443 578887765422 01 1221 12111 0111222
Q ss_pred HHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEE
Q 025715 110 VVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (249)
Q Consensus 110 ~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k 166 (249)
.+.+... ..+|+|+-- .|. ..+..+.+.|+++|++++-
T Consensus 213 ~i~~~~~-~gvd~v~d~-----~g~-------------~~~~~~~~~l~~~G~iv~~ 250 (338)
T cd08295 213 ALKRYFP-NGIDIYFDN-----VGG-------------KMLDAVLLNMNLHGRIAAC 250 (338)
T ss_pred HHHHhCC-CCcEEEEEC-----CCH-------------HHHHHHHHHhccCcEEEEe
Confidence 3333333 579999842 221 1355678899999999863
No 438
>PRK05717 oxidoreductase; Validated
Probab=55.55 E-value=1.2e+02 Score=25.25 Aligned_cols=77 Identities=14% Similarity=0.083 Sum_probs=49.4
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC------CC-CCceEeecCCCChhhHHHHHH
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PI-EGVIQVQGDITNARTAEVVIR 113 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~------~~-~~v~~~~gDi~~~~~~~~i~~ 113 (249)
.|.++|=.|+ +|++...+++++.. ...+|+.+|.++.. .+ ..+.++.+|+++.+......+
T Consensus 9 ~~k~vlItG~-sg~IG~~~a~~l~~-----------~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 76 (255)
T PRK05717 9 NGRVALVTGA-ARGIGLGIAAWLIA-----------EGWQVVLADLDRERGSKVAKALGENAWFIAMDVADEAQVAAGVA 76 (255)
T ss_pred CCCEEEEeCC-cchHHHHHHHHHHH-----------cCCEEEEEcCCHHHHHHHHHHcCCceEEEEccCCCHHHHHHHHH
Confidence 4678887776 47777777776642 23588888876532 11 246778999999765544332
Q ss_pred hcC--CCcccEEEeCCCC
Q 025715 114 HFD--GCKADLVVCDGAP 129 (249)
Q Consensus 114 ~~~--~~~~DlVlsD~~~ 129 (249)
.+. -+.+|.|+.+...
T Consensus 77 ~~~~~~g~id~li~~ag~ 94 (255)
T PRK05717 77 EVLGQFGRLDALVCNAAI 94 (255)
T ss_pred HHHHHhCCCCEEEECCCc
Confidence 221 1368999998753
No 439
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=55.42 E-value=94 Score=27.32 Aligned_cols=96 Identities=18% Similarity=0.206 Sum_probs=50.0
Q ss_pred ccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCe-EEEecCCCCCC--C--CCce-EeecCCCChhh---HH
Q 025715 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPL-IVAIDLQPMAP--I--EGVI-QVQGDITNART---AE 109 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~-vvavDi~~~~~--~--~~v~-~~~gDi~~~~~---~~ 109 (249)
+++|.+||=.|+ |+....+.+.... .... |++++.++... . .+.. ++ |..+... .+
T Consensus 160 ~~~g~~vlI~g~--g~vG~~a~~lak~-----------~G~~~v~~~~~~~~~~~~~~~~g~~~vi--~~~~~~~~~~~~ 224 (343)
T cd05285 160 VRPGDTVLVFGA--GPIGLLTAAVAKA-----------FGATKVVVTDIDPSRLEFAKELGATHTV--NVRTEDTPESAE 224 (343)
T ss_pred CCCCCEEEEECC--CHHHHHHHHHHHH-----------cCCcEEEEECCCHHHHHHHHHcCCcEEe--ccccccchhHHH
Confidence 477889888764 5666654443220 1134 77776654210 0 1221 12 1111111 23
Q ss_pred HHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEE
Q 025715 110 VVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (249)
Q Consensus 110 ~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k 166 (249)
.+.+...++.+|+|+.-. |. + ..+..+.+.|+++|+++.-
T Consensus 225 ~~~~~~~~~~~d~vld~~-----g~---~---------~~~~~~~~~l~~~G~~v~~ 264 (343)
T cd05285 225 KIAELLGGKGPDVVIECT-----GA---E---------SCIQTAIYATRPGGTVVLV 264 (343)
T ss_pred HHHHHhCCCCCCEEEECC-----CC---H---------HHHHHHHHHhhcCCEEEEE
Confidence 344444556699998532 11 0 1355678899999998863
No 440
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=55.31 E-value=2e+02 Score=28.39 Aligned_cols=73 Identities=23% Similarity=0.181 Sum_probs=49.1
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----CCCCceEeecCCCChhhHHHHHHh
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----PIEGVIQVQGDITNARTAEVVIRH 114 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----~~~~v~~~~gDi~~~~~~~~i~~~ 114 (249)
.++++||=.| |+|....++.+++-.. .+.+|+++|..+.. ..++++++.+|+++.... +.+.
T Consensus 313 ~~~~~VLVTG-atGFIGs~Lv~~Ll~~----------~g~~V~~l~r~~~~~~~~~~~~~~~~~~gDl~d~~~~--l~~~ 379 (660)
T PRK08125 313 KRRTRVLILG-VNGFIGNHLTERLLRD----------DNYEVYGLDIGSDAISRFLGHPRFHFVEGDISIHSEW--IEYH 379 (660)
T ss_pred hcCCEEEEEC-CCchHHHHHHHHHHhC----------CCcEEEEEeCCchhhhhhcCCCceEEEeccccCcHHH--HHHH
Confidence 5678888887 7899999998877410 12589999986632 124688899999985421 1222
Q ss_pred cCCCcccEEEeCC
Q 025715 115 FDGCKADLVVCDG 127 (249)
Q Consensus 115 ~~~~~~DlVlsD~ 127 (249)
+. .+|.|+.-.
T Consensus 380 l~--~~D~ViHlA 390 (660)
T PRK08125 380 IK--KCDVVLPLV 390 (660)
T ss_pred hc--CCCEEEECc
Confidence 32 589998744
No 441
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=55.29 E-value=1.2e+02 Score=25.24 Aligned_cols=76 Identities=9% Similarity=0.023 Sum_probs=50.4
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC------CC----CCceEeecCCCChhhHHH
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PI----EGVIQVQGDITNARTAEV 110 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~------~~----~~v~~~~gDi~~~~~~~~ 110 (249)
.+.++|=.| |+|+....+++++.. .+..|+.++.++.. .+ .++.++.+|+++.+..+.
T Consensus 11 ~~k~ilItG-a~g~IG~~la~~l~~-----------~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~Dl~d~~~i~~ 78 (259)
T PRK08213 11 SGKTALVTG-GSRGLGLQIAEALGE-----------AGARVVLSARKAEELEEAAAHLEALGIDALWIAADVADEADIER 78 (259)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHH-----------cCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHH
Confidence 457888888 678888888877642 23578888876421 01 245678999999877644
Q ss_pred HHHhcC--CCcccEEEeCCC
Q 025715 111 VIRHFD--GCKADLVVCDGA 128 (249)
Q Consensus 111 i~~~~~--~~~~DlVlsD~~ 128 (249)
....+. .+.+|.|++...
T Consensus 79 ~~~~~~~~~~~id~vi~~ag 98 (259)
T PRK08213 79 LAEETLERFGHVDILVNNAG 98 (259)
T ss_pred HHHHHHHHhCCCCEEEECCC
Confidence 433221 146899998864
No 442
>PRK09135 pteridine reductase; Provisional
Probab=55.15 E-value=58 Score=26.80 Aligned_cols=76 Identities=11% Similarity=0.046 Sum_probs=50.3
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC----------CC--CCceEeecCCCChhhH
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------PI--EGVIQVQGDITNARTA 108 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~----------~~--~~v~~~~gDi~~~~~~ 108 (249)
.+.++|=.|+ +|+...++++.+.. .+.+|++++.+... .. ..+.++.+|+++.+..
T Consensus 5 ~~~~vlItGa-~g~iG~~l~~~l~~-----------~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~ 72 (249)
T PRK09135 5 SAKVALITGG-ARRIGAAIARTLHA-----------AGYRVAIHYHRSAAEADALAAELNALRPGSAAALQADLLDPDAL 72 (249)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHH-----------CCCEEEEEcCCCHHHHHHHHHHHHhhcCCceEEEEcCCCCHHHH
Confidence 3468888895 68888888777642 24689999876421 01 2467789999998765
Q ss_pred HHHHHhcC--CCcccEEEeCCC
Q 025715 109 EVVIRHFD--GCKADLVVCDGA 128 (249)
Q Consensus 109 ~~i~~~~~--~~~~DlVlsD~~ 128 (249)
..+.+... -+.+|.|+....
T Consensus 73 ~~~~~~~~~~~~~~d~vi~~ag 94 (249)
T PRK09135 73 PELVAACVAAFGRLDALVNNAS 94 (249)
T ss_pred HHHHHHHHHHcCCCCEEEECCC
Confidence 55443221 136899998865
No 443
>CHL00194 ycf39 Ycf39; Provisional
Probab=54.96 E-value=53 Score=28.83 Aligned_cols=66 Identities=14% Similarity=0.097 Sum_probs=44.1
Q ss_pred eEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC----CCCCceEeecCCCChhhHHHHHHhcCCCc
Q 025715 44 RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----PIEGVIQVQGDITNARTAEVVIRHFDGCK 119 (249)
Q Consensus 44 ~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~----~~~~v~~~~gDi~~~~~~~~i~~~~~~~~ 119 (249)
+||= -.|+|....++.+.+-. .+.+|++++.++.. ...+++++.+|++++..... .+. .
T Consensus 2 kIlV-tGatG~iG~~lv~~Ll~-----------~g~~V~~l~R~~~~~~~l~~~~v~~v~~Dl~d~~~l~~---al~--g 64 (317)
T CHL00194 2 SLLV-IGATGTLGRQIVRQALD-----------EGYQVRCLVRNLRKASFLKEWGAELVYGDLSLPETLPP---SFK--G 64 (317)
T ss_pred EEEE-ECCCcHHHHHHHHHHHH-----------CCCeEEEEEcChHHhhhHhhcCCEEEECCCCCHHHHHH---HHC--C
Confidence 4443 34789999988876641 23588999877532 12478899999999765433 333 4
Q ss_pred ccEEEeC
Q 025715 120 ADLVVCD 126 (249)
Q Consensus 120 ~DlVlsD 126 (249)
+|.|++-
T Consensus 65 ~d~Vi~~ 71 (317)
T CHL00194 65 VTAIIDA 71 (317)
T ss_pred CCEEEEC
Confidence 7998874
No 444
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=54.61 E-value=89 Score=27.57 Aligned_cols=93 Identities=22% Similarity=0.206 Sum_probs=51.6
Q ss_pred ccCCCeEEEEcCCCChHHHHH---HHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC----CCCce-EeecCCCChhhHHH
Q 025715 39 FEGVKRVVDLCAAPGSWSQVL---SRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----IEGVI-QVQGDITNARTAEV 110 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~l---~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~----~~~v~-~~~gDi~~~~~~~~ 110 (249)
+++|.+||=.|+ |+..+.+ ++..+ ...|+++|.++.+. -.++. .+ |..+.+...+
T Consensus 164 ~~~g~~vlI~g~--g~iG~~~~~lak~~G-------------~~~v~~~~~~~~~~~~~~~~g~~~~v--~~~~~~~~~~ 226 (351)
T cd08285 164 IKLGDTVAVFGI--GPVGLMAVAGARLRG-------------AGRIIAVGSRPNRVELAKEYGATDIV--DYKNGDVVEQ 226 (351)
T ss_pred CCCCCEEEEECC--CHHHHHHHHHHHHcC-------------CCeEEEEeCCHHHHHHHHHcCCceEe--cCCCCCHHHH
Confidence 467888888864 5566554 43433 23688888775321 01221 12 2222222333
Q ss_pred HHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEE
Q 025715 111 VIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIA 165 (249)
Q Consensus 111 i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~ 165 (249)
+.+...+..+|+|+.- .|. . ..+..+.+.|+++|+++.
T Consensus 227 i~~~~~~~~~d~vld~-----~g~---~---------~~~~~~~~~l~~~G~~v~ 264 (351)
T cd08285 227 ILKLTGGKGVDAVIIA-----GGG---Q---------DTFEQALKVLKPGGTISN 264 (351)
T ss_pred HHHHhCCCCCcEEEEC-----CCC---H---------HHHHHHHHHhhcCCEEEE
Confidence 4443444579999852 221 0 245677889999999985
No 445
>PRK05855 short chain dehydrogenase; Validated
Probab=54.31 E-value=98 Score=29.19 Aligned_cols=76 Identities=20% Similarity=0.102 Sum_probs=50.8
Q ss_pred CCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC------CC----CCceEeecCCCChhhHHHH
Q 025715 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PI----EGVIQVQGDITNARTAEVV 111 (249)
Q Consensus 42 g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~------~~----~~v~~~~gDi~~~~~~~~i 111 (249)
+.++|=.|+ +|++...+++++.. .+.+|+.++.+... .+ .++.++..|+++.+....+
T Consensus 315 ~~~~lv~G~-s~giG~~~a~~l~~-----------~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~ 382 (582)
T PRK05855 315 GKLVVVTGA-GSGIGRETALAFAR-----------EGAEVVASDIDEAAAERTAELIRAAGAVAHAYRVDVSDADAMEAF 382 (582)
T ss_pred CCEEEEECC-cCHHHHHHHHHHHH-----------CCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHH
Confidence 456776664 78888888777752 23578888887521 01 2467788999998876655
Q ss_pred HHhcC--CCcccEEEeCCCC
Q 025715 112 IRHFD--GCKADLVVCDGAP 129 (249)
Q Consensus 112 ~~~~~--~~~~DlVlsD~~~ 129 (249)
.+.+. .+.+|+++.+...
T Consensus 383 ~~~~~~~~g~id~lv~~Ag~ 402 (582)
T PRK05855 383 AEWVRAEHGVPDIVVNNAGI 402 (582)
T ss_pred HHHHHHhcCCCcEEEECCcc
Confidence 54321 2469999998754
No 446
>PRK06125 short chain dehydrogenase; Provisional
Probab=53.81 E-value=1.3e+02 Score=25.11 Aligned_cols=73 Identities=14% Similarity=0.058 Sum_probs=49.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC------C-----CCceEeecCCCChhhHHH
Q 025715 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP------I-----EGVIQVQGDITNARTAEV 110 (249)
Q Consensus 42 g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~------~-----~~v~~~~gDi~~~~~~~~ 110 (249)
++++|=.|+ +|+....+++.+.. ....|+.++.++... + .++..+..|+++.+....
T Consensus 7 ~k~vlItG~-~~giG~~ia~~l~~-----------~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~ 74 (259)
T PRK06125 7 GKRVLITGA-SKGIGAAAAEAFAA-----------EGCHLHLVARDADALEALAADLRAAHGVDVAVHALDLSSPEAREQ 74 (259)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHH-----------cCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHH
Confidence 567887885 67778877776642 235888888775310 1 246678899999877666
Q ss_pred HHHhcCCCcccEEEeCCC
Q 025715 111 VIRHFDGCKADLVVCDGA 128 (249)
Q Consensus 111 i~~~~~~~~~DlVlsD~~ 128 (249)
+.+.+ +.+|.++.+..
T Consensus 75 ~~~~~--g~id~lv~~ag 90 (259)
T PRK06125 75 LAAEA--GDIDILVNNAG 90 (259)
T ss_pred HHHHh--CCCCEEEECCC
Confidence 65544 47999998864
No 447
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=53.77 E-value=1.3e+02 Score=26.91 Aligned_cols=95 Identities=16% Similarity=0.135 Sum_probs=51.2
Q ss_pred ccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCC-eEEEecCCCCCC--C--CCce-EeecCCCCh--hhHHH
Q 025715 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLP-LIVAIDLQPMAP--I--EGVI-QVQGDITNA--RTAEV 110 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~-~vvavDi~~~~~--~--~~v~-~~~gDi~~~--~~~~~ 110 (249)
+++|.+||=+|+ |+....+.+.... ... .|+++|.++.+. . -++. .+ |..+. +..+.
T Consensus 184 ~~~g~~VlV~G~--G~vG~~a~~~ak~-----------~G~~~vi~~~~~~~~~~~~~~lGa~~~i--~~~~~~~~~~~~ 248 (368)
T cd08300 184 VEPGSTVAVFGL--GAVGLAVIQGAKA-----------AGASRIIGIDINPDKFELAKKFGATDCV--NPKDHDKPIQQV 248 (368)
T ss_pred CCCCCEEEEECC--CHHHHHHHHHHHH-----------cCCCeEEEEeCCHHHHHHHHHcCCCEEE--cccccchHHHHH
Confidence 367889988875 6666655443221 124 689998876431 0 1221 12 22221 12223
Q ss_pred HHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCC-CEEEEE
Q 025715 111 VIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEG-GKFIAK 166 (249)
Q Consensus 111 i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~g-G~lv~k 166 (249)
+.+... +.+|+|+- +.|. ...+..+.+.|+++ |+++..
T Consensus 249 v~~~~~-~g~d~vid-----~~g~------------~~~~~~a~~~l~~~~G~~v~~ 287 (368)
T cd08300 249 LVEMTD-GGVDYTFE-----CIGN------------VKVMRAALEACHKGWGTSVII 287 (368)
T ss_pred HHHHhC-CCCcEEEE-----CCCC------------hHHHHHHHHhhccCCCeEEEE
Confidence 332223 47999984 2221 02456678899997 998864
No 448
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=53.64 E-value=1.6e+02 Score=26.08 Aligned_cols=72 Identities=14% Similarity=0.022 Sum_probs=48.5
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC---------CCCceEeecCCCChhhHHHH
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP---------IEGVIQVQGDITNARTAEVV 111 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~---------~~~v~~~~gDi~~~~~~~~i 111 (249)
.+++||=.| |+|....++++.+-. .+..|++++.++... ..+++++.+|+++......+
T Consensus 9 ~~~~vLVtG-~~GfIG~~l~~~L~~-----------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 76 (353)
T PLN02896 9 ATGTYCVTG-ATGYIGSWLVKLLLQ-----------RGYTVHATLRDPAKSLHLLSKWKEGDRLRLFRADLQEEGSFDEA 76 (353)
T ss_pred CCCEEEEEC-CCcHHHHHHHHHHHH-----------CCCEEEEEeCChHHHHHHHHhhccCCeEEEEECCCCCHHHHHHH
Confidence 467888887 478999988887642 235888887654211 13577889999997654333
Q ss_pred HHhcCCCcccEEEeCCCC
Q 025715 112 IRHFDGCKADLVVCDGAP 129 (249)
Q Consensus 112 ~~~~~~~~~DlVlsD~~~ 129 (249)
+. .+|.|+.-.+.
T Consensus 77 ---~~--~~d~Vih~A~~ 89 (353)
T PLN02896 77 ---VK--GCDGVFHVAAS 89 (353)
T ss_pred ---Hc--CCCEEEECCcc
Confidence 22 48999887653
No 449
>PRK12828 short chain dehydrogenase; Provisional
Probab=53.44 E-value=54 Score=26.76 Aligned_cols=75 Identities=12% Similarity=-0.005 Sum_probs=48.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC------C--CCCceEeecCCCChhhHHHHHH
Q 025715 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------P--IEGVIQVQGDITNARTAEVVIR 113 (249)
Q Consensus 42 g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~------~--~~~v~~~~gDi~~~~~~~~i~~ 113 (249)
++++|=.| |+|+....+++.+.. .+.+|++++.++.. . -.++..+.+|+.+.+.+....+
T Consensus 7 ~k~vlItG-atg~iG~~la~~l~~-----------~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 74 (239)
T PRK12828 7 GKVVAITG-GFGGLGRATAAWLAA-----------RGARVALIGRGAAPLSQTLPGVPADALRIGGIDLVDPQAARRAVD 74 (239)
T ss_pred CCEEEEEC-CCCcHhHHHHHHHHH-----------CCCeEEEEeCChHhHHHHHHHHhhcCceEEEeecCCHHHHHHHHH
Confidence 56788788 457888888776642 24689999886532 1 1356677899998776554433
Q ss_pred hcC--CCcccEEEeCCC
Q 025715 114 HFD--GCKADLVVCDGA 128 (249)
Q Consensus 114 ~~~--~~~~DlVlsD~~ 128 (249)
... -+++|.|+....
T Consensus 75 ~~~~~~~~~d~vi~~ag 91 (239)
T PRK12828 75 EVNRQFGRLDALVNIAG 91 (239)
T ss_pred HHHHHhCCcCEEEECCc
Confidence 221 136899998754
No 450
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=53.23 E-value=35 Score=32.35 Aligned_cols=134 Identities=16% Similarity=0.175 Sum_probs=77.7
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-CCC--CceEeecC---CCC---hhhHHHH
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-PIE--GVIQVQGD---ITN---ARTAEVV 111 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-~~~--~v~~~~gD---i~~---~~~~~~i 111 (249)
.+..+|=+|=|.|++...+.-.++ ...++||++.|.. ..+ ...+.+.| +.- .+-++..
T Consensus 295 ~~~~~lvvg~ggG~l~sfl~~~~p-------------~~~i~~ve~dP~~l~va~q~f~f~q~~r~~V~i~dGl~~~~~~ 361 (482)
T KOG2352|consen 295 TGGKQLVVGLGGGGLPSFLHMSLP-------------KFQITAVEIDPEMLEVATQYFGFMQSDRNKVHIADGLDFLQRT 361 (482)
T ss_pred ccCcEEEEecCCCccccceeeecC-------------ccceeEEEEChhHhhccHhhhchhhhhhhhhhHhhchHHHHHH
Confidence 456777778788999988866554 5789999999843 111 11122222 111 1111222
Q ss_pred HHh-cCCCcccEEEeCC-CCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEe-cC-CCHHHHHHHHhcCCCee
Q 025715 112 IRH-FDGCKADLVVCDG-APDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF-RG-KDTSLLYCQLKLFFPVV 187 (249)
Q Consensus 112 ~~~-~~~~~~DlVlsD~-~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~-~~-~~~~~l~~~l~~~f~~v 187 (249)
.++ -.+..+|+++-|. +.+..|..-.. +.-+...++..+...|.|.|.|.+-.. +. +-..++...++..|..+
T Consensus 362 ~k~~~~~~~~dvl~~dvds~d~~g~~~pp---~~fva~~~l~~~k~~l~p~g~f~inlv~r~~~~~~~~~~~l~~vf~~l 438 (482)
T KOG2352|consen 362 AKSQQEDICPDVLMVDVDSKDSHGMQCPP---PAFVAQVALQPVKMILPPRGMFIINLVTRNSSFKDEVLMNLAKVFPQL 438 (482)
T ss_pred hhccccccCCcEEEEECCCCCcccCcCCc---hHHHHHHHHHHHhhccCccceEEEEEecCCcchhHHHHHhhhhhhHHH
Confidence 221 1235799999885 22222322222 233445677888899999999987654 33 33456777777777665
Q ss_pred EEe
Q 025715 188 TFA 190 (249)
Q Consensus 188 ~~~ 190 (249)
..+
T Consensus 439 ~~~ 441 (482)
T KOG2352|consen 439 YHH 441 (482)
T ss_pred hhh
Confidence 544
No 451
>PRK12744 short chain dehydrogenase; Provisional
Probab=53.21 E-value=1.3e+02 Score=25.03 Aligned_cols=76 Identities=18% Similarity=0.177 Sum_probs=47.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC----------C----CCceEeecCCCChhh
Q 025715 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----------I----EGVIQVQGDITNART 107 (249)
Q Consensus 42 g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~----------~----~~v~~~~gDi~~~~~ 107 (249)
+.++|=.| |+|+....+++.+.. .+.+|+.++.+.... + ..+.+++.|+++.+.
T Consensus 8 ~k~vlItG-a~~gIG~~~a~~l~~-----------~G~~vv~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~ 75 (257)
T PRK12744 8 GKVVLIAG-GAKNLGGLIARDLAA-----------QGAKAVAIHYNSAASKADAEETVAAVKAAGAKAVAFQADLTTAAA 75 (257)
T ss_pred CcEEEEEC-CCchHHHHHHHHHHH-----------CCCcEEEEecCCccchHHHHHHHHHHHHhCCcEEEEecCcCCHHH
Confidence 46788777 466777777776641 234656665433210 1 246678999999877
Q ss_pred HHHHHHhcC--CCcccEEEeCCCC
Q 025715 108 AEVVIRHFD--GCKADLVVCDGAP 129 (249)
Q Consensus 108 ~~~i~~~~~--~~~~DlVlsD~~~ 129 (249)
...+.+... .+.+|.++.+...
T Consensus 76 ~~~~~~~~~~~~~~id~li~~ag~ 99 (257)
T PRK12744 76 VEKLFDDAKAAFGRPDIAINTVGK 99 (257)
T ss_pred HHHHHHHHHHhhCCCCEEEECCcc
Confidence 655443321 1469999988753
No 452
>PRK06483 dihydromonapterin reductase; Provisional
Probab=53.20 E-value=1.3e+02 Score=24.75 Aligned_cols=74 Identities=9% Similarity=0.057 Sum_probs=48.2
Q ss_pred CeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC-----CCCceEeecCCCChhhHHHHHHhcC-
Q 025715 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP-----IEGVIQVQGDITNARTAEVVIRHFD- 116 (249)
Q Consensus 43 ~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~-----~~~v~~~~gDi~~~~~~~~i~~~~~- 116 (249)
+++|-.|++ |++...+++.+.. .+.+|+.++.++... ..++.++..|+.+.+......+.+.
T Consensus 3 k~vlItGas-~gIG~~ia~~l~~-----------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 70 (236)
T PRK06483 3 APILITGAG-QRIGLALAWHLLA-----------QGQPVIVSYRTHYPAIDGLRQAGAQCIQADFSTNAGIMAFIDELKQ 70 (236)
T ss_pred ceEEEECCC-ChHHHHHHHHHHH-----------CCCeEEEEeCCchhHHHHHHHcCCEEEEcCCCCHHHHHHHHHHHHh
Confidence 467777755 6677777776642 246888888876431 1256778899999776555443322
Q ss_pred -CCcccEEEeCCC
Q 025715 117 -GCKADLVVCDGA 128 (249)
Q Consensus 117 -~~~~DlVlsD~~ 128 (249)
-+.+|.++.+..
T Consensus 71 ~~~~id~lv~~ag 83 (236)
T PRK06483 71 HTDGLRAIIHNAS 83 (236)
T ss_pred hCCCccEEEECCc
Confidence 146899998864
No 453
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=53.17 E-value=65 Score=26.78 Aligned_cols=74 Identities=12% Similarity=-0.007 Sum_probs=48.2
Q ss_pred CeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC-----------CCCceEeecCCCChhhHHHH
Q 025715 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP-----------IEGVIQVQGDITNARTAEVV 111 (249)
Q Consensus 43 ~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~-----------~~~v~~~~gDi~~~~~~~~i 111 (249)
+++|=.| |+|++...+++.+.. .+..|+.++...... -.++.++.+|+++.+....+
T Consensus 3 k~vlItG-~sg~iG~~la~~L~~-----------~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 70 (256)
T PRK12745 3 PVALVTG-GRRGIGLGIARALAA-----------AGFDLAINDRPDDEELAATQQELRALGVEVIFFPADVADLSAHEAM 70 (256)
T ss_pred cEEEEeC-CCchHHHHHHHHHHH-----------CCCEEEEEecCchhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHH
Confidence 3566666 688888888877652 235888888654210 12467889999997765544
Q ss_pred HHhcC--CCcccEEEeCCC
Q 025715 112 IRHFD--GCKADLVVCDGA 128 (249)
Q Consensus 112 ~~~~~--~~~~DlVlsD~~ 128 (249)
.+.+. .+.+|.|+.+..
T Consensus 71 ~~~~~~~~~~id~vi~~ag 89 (256)
T PRK12745 71 LDAAQAAWGRIDCLVNNAG 89 (256)
T ss_pred HHHHHHhcCCCCEEEECCc
Confidence 43321 146999998864
No 454
>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]
Probab=52.93 E-value=1.2e+02 Score=26.84 Aligned_cols=96 Identities=19% Similarity=0.119 Sum_probs=53.3
Q ss_pred ccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-C---CCCceEeecCCCChhhHHHHHHh
Q 025715 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-P---IEGVIQVQGDITNARTAEVVIRH 114 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-~---~~~v~~~~gDi~~~~~~~~i~~~ 114 (249)
++||.+||= -++-||....+.+.+.. .+.++++.--...+ . -.|++. .-|....+...++.+.
T Consensus 144 vkpGhtVlv-haAAGGVGlll~Ql~ra-----------~~a~tI~~asTaeK~~~akenG~~h-~I~y~~eD~v~~V~ki 210 (336)
T KOG1197|consen 144 VKPGHTVLV-HAAAGGVGLLLCQLLRA-----------VGAHTIATASTAEKHEIAKENGAEH-PIDYSTEDYVDEVKKI 210 (336)
T ss_pred CCCCCEEEE-EeccccHHHHHHHHHHh-----------cCcEEEEEeccHHHHHHHHhcCCcc-eeeccchhHHHHHHhc
Confidence 478988774 44566777777776542 13566665443322 1 123321 1133333334445444
Q ss_pred cCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEE
Q 025715 115 FDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIA 165 (249)
Q Consensus 115 ~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~ 165 (249)
-.+..+|.+.-. .|. +-+...+.+||++|.+|-
T Consensus 211 TngKGVd~vyDs-----vG~-------------dt~~~sl~~Lk~~G~mVS 243 (336)
T KOG1197|consen 211 TNGKGVDAVYDS-----VGK-------------DTFAKSLAALKPMGKMVS 243 (336)
T ss_pred cCCCCceeeecc-----ccc-------------hhhHHHHHHhccCceEEE
Confidence 445779988732 221 235567889999999985
No 455
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=52.56 E-value=1.3e+02 Score=24.80 Aligned_cols=75 Identities=19% Similarity=0.093 Sum_probs=49.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC------C----CCceEeecCCCChhhHHHH
Q 025715 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP------I----EGVIQVQGDITNARTAEVV 111 (249)
Q Consensus 42 g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~------~----~~v~~~~gDi~~~~~~~~i 111 (249)
+.+||=.| |+|+....+++++.. .+.+|+.++.++... + .++..+.+|+.+.+..+.+
T Consensus 4 ~~~vlItG-~sg~iG~~la~~l~~-----------~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 71 (258)
T PRK12429 4 GKVALVTG-AASGIGLEIALALAK-----------EGAKVVIADLNDEAAAAAAEALQKAGGKAIGVAMDVTDEEAINAG 71 (258)
T ss_pred CCEEEEEC-CCchHHHHHHHHHHH-----------CCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHH
Confidence 45677666 468888888887642 235888888876321 1 3466789999998765554
Q ss_pred HHhcC--CCcccEEEeCCC
Q 025715 112 IRHFD--GCKADLVVCDGA 128 (249)
Q Consensus 112 ~~~~~--~~~~DlVlsD~~ 128 (249)
.+.+. .+.+|+|+++..
T Consensus 72 ~~~~~~~~~~~d~vi~~a~ 90 (258)
T PRK12429 72 IDYAVETFGGVDILVNNAG 90 (258)
T ss_pred HHHHHHHcCCCCEEEECCC
Confidence 43321 136899998864
No 456
>PRK06949 short chain dehydrogenase; Provisional
Probab=52.43 E-value=47 Score=27.72 Aligned_cols=76 Identities=13% Similarity=0.070 Sum_probs=49.8
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC------C----CCCceEeecCCCChhhHHH
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------P----IEGVIQVQGDITNARTAEV 110 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~------~----~~~v~~~~gDi~~~~~~~~ 110 (249)
.++++|=.| |+|+....+++.+.. ...+|++++.++.. . -.++.++.+|+++.+....
T Consensus 8 ~~k~ilItG-asg~IG~~~a~~l~~-----------~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~ 75 (258)
T PRK06949 8 EGKVALVTG-ASSGLGARFAQVLAQ-----------AGAKVVLASRRVERLKELRAEIEAEGGAAHVVSLDVTDYQSIKA 75 (258)
T ss_pred CCCEEEEEC-CCcHHHHHHHHHHHH-----------CCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHH
Confidence 357888888 677888887776642 23578888876522 0 1246778899998765544
Q ss_pred HHHhcC--CCcccEEEeCCC
Q 025715 111 VIRHFD--GCKADLVVCDGA 128 (249)
Q Consensus 111 i~~~~~--~~~~DlVlsD~~ 128 (249)
+.+.+. .+.+|.|+.+..
T Consensus 76 ~~~~~~~~~~~~d~li~~ag 95 (258)
T PRK06949 76 AVAHAETEAGTIDILVNNSG 95 (258)
T ss_pred HHHHHHHhcCCCCEEEECCC
Confidence 433221 246899999865
No 457
>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=51.84 E-value=2e+02 Score=26.58 Aligned_cols=76 Identities=18% Similarity=0.190 Sum_probs=48.8
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC----C---CCceEeecCCCChhhHHHHHH
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----I---EGVIQVQGDITNARTAEVVIR 113 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~----~---~~v~~~~gDi~~~~~~~~i~~ 113 (249)
++.++|=.|+ +|++...+++.+.. ...+|+.+|...... + -+...+..|+++.+....+.+
T Consensus 209 ~g~~vlItGa-sggIG~~la~~l~~-----------~Ga~vi~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~~~~~~~ 276 (450)
T PRK08261 209 AGKVALVTGA-ARGIGAAIAEVLAR-----------DGAHVVCLDVPAAGEALAAVANRVGGTALALDITAPDAPARIAE 276 (450)
T ss_pred CCCEEEEecC-CCHHHHHHHHHHHH-----------CCCEEEEEeCCccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHH
Confidence 3567877775 57778777776642 246888888753211 0 134567889999876655544
Q ss_pred hcC--CCcccEEEeCCC
Q 025715 114 HFD--GCKADLVVCDGA 128 (249)
Q Consensus 114 ~~~--~~~~DlVlsD~~ 128 (249)
... .+.+|.|+.+..
T Consensus 277 ~~~~~~g~id~vi~~AG 293 (450)
T PRK08261 277 HLAERHGGLDIVVHNAG 293 (450)
T ss_pred HHHHhCCCCCEEEECCC
Confidence 332 136899998864
No 458
>PRK06197 short chain dehydrogenase; Provisional
Probab=51.58 E-value=1.6e+02 Score=25.45 Aligned_cols=76 Identities=12% Similarity=-0.028 Sum_probs=49.3
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC------C------CCCceEeecCCCChhhH
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------P------IEGVIQVQGDITNARTA 108 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~------~------~~~v~~~~gDi~~~~~~ 108 (249)
.+++||=.| |+|+....+++.+.. .+.+|+.++.++.. . -..+.++.+|+.+.+..
T Consensus 15 ~~k~vlItG-as~gIG~~~a~~l~~-----------~G~~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v 82 (306)
T PRK06197 15 SGRVAVVTG-ANTGLGYETAAALAA-----------KGAHVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASV 82 (306)
T ss_pred CCCEEEEcC-CCCcHHHHHHHHHHH-----------CCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHH
Confidence 456777666 467788888776642 23578777765421 0 12467789999998766
Q ss_pred HHHHHhcC--CCcccEEEeCCC
Q 025715 109 EVVIRHFD--GCKADLVVCDGA 128 (249)
Q Consensus 109 ~~i~~~~~--~~~~DlVlsD~~ 128 (249)
..+.+.+. .+.+|+|+.+..
T Consensus 83 ~~~~~~~~~~~~~iD~li~nAg 104 (306)
T PRK06197 83 RAAADALRAAYPRIDLLINNAG 104 (306)
T ss_pred HHHHHHHHhhCCCCCEEEECCc
Confidence 55544332 146999999875
No 459
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=51.56 E-value=1.4e+02 Score=24.59 Aligned_cols=76 Identities=9% Similarity=0.053 Sum_probs=49.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC------CC----CCceEeecCCCChhhHHHH
Q 025715 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PI----EGVIQVQGDITNARTAEVV 111 (249)
Q Consensus 42 g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~------~~----~~v~~~~gDi~~~~~~~~i 111 (249)
+.++|=.| |+|+....+++++.. .+..|+.++.++.. .+ .++.++.+|+++......+
T Consensus 7 ~~~vlVtG-~sg~iG~~l~~~L~~-----------~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 74 (239)
T PRK07666 7 GKNALITG-AGRGIGRAVAIALAK-----------EGVNVGLLARTEENLKAVAEEVEAYGVKVVIATADVSDYEEVTAA 74 (239)
T ss_pred CCEEEEEc-CCchHHHHHHHHHHH-----------CCCEEEEEeCCHHHHHHHHHHHHHhCCeEEEEECCCCCHHHHHHH
Confidence 45788888 478888887776531 24688888887521 01 2466789999998765554
Q ss_pred HHhcC--CCcccEEEeCCCC
Q 025715 112 IRHFD--GCKADLVVCDGAP 129 (249)
Q Consensus 112 ~~~~~--~~~~DlVlsD~~~ 129 (249)
.+... .+.+|.|++....
T Consensus 75 ~~~~~~~~~~id~vi~~ag~ 94 (239)
T PRK07666 75 IEQLKNELGSIDILINNAGI 94 (239)
T ss_pred HHHHHHHcCCccEEEEcCcc
Confidence 43321 1468999988654
No 460
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=51.40 E-value=12 Score=28.15 Aligned_cols=22 Identities=18% Similarity=0.277 Sum_probs=18.1
Q ss_pred HHHHHHHHHHhccCCCEEEEEE
Q 025715 146 ILAGLTVVTHVLKEGGKFIAKI 167 (249)
Q Consensus 146 ~~~~l~~a~~~Lk~gG~lv~k~ 167 (249)
+...+..+...|+|||.|++.-
T Consensus 23 l~~~f~~~~~~L~pGG~lilEp 44 (110)
T PF06859_consen 23 LKRFFRRIYSLLRPGGILILEP 44 (110)
T ss_dssp HHHHHHHHHHHEEEEEEEEEE-
T ss_pred HHHHHHHHHHhhCCCCEEEEeC
Confidence 3567888999999999999853
No 461
>PLN02214 cinnamoyl-CoA reductase
Probab=51.11 E-value=1.8e+02 Score=25.84 Aligned_cols=72 Identities=18% Similarity=0.151 Sum_probs=47.6
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-------CC----CCceEeecCCCChhhHH
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-------PI----EGVIQVQGDITNARTAE 109 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-------~~----~~v~~~~gDi~~~~~~~ 109 (249)
++++||=.|+ +|....++++.+-. .+..|++++.+... .+ .++.++.+|+++.....
T Consensus 9 ~~~~vlVTGa-tGfIG~~l~~~L~~-----------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~ 76 (342)
T PLN02214 9 AGKTVCVTGA-GGYIASWIVKILLE-----------RGYTVKGTVRNPDDPKNTHLRELEGGKERLILCKADLQDYEALK 76 (342)
T ss_pred CCCEEEEECC-CcHHHHHHHHHHHH-----------CcCEEEEEeCCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHH
Confidence 4568888775 78888888776641 23578887765421 11 24678899999876543
Q ss_pred HHHHhcCCCcccEEEeCCCC
Q 025715 110 VVIRHFDGCKADLVVCDGAP 129 (249)
Q Consensus 110 ~i~~~~~~~~~DlVlsD~~~ 129 (249)
.. +. .+|.|+...++
T Consensus 77 ~~---~~--~~d~Vih~A~~ 91 (342)
T PLN02214 77 AA---ID--GCDGVFHTASP 91 (342)
T ss_pred HH---Hh--cCCEEEEecCC
Confidence 33 32 48999887754
No 462
>PRK05867 short chain dehydrogenase; Provisional
Probab=50.95 E-value=1.4e+02 Score=24.75 Aligned_cols=77 Identities=14% Similarity=0.093 Sum_probs=49.9
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC------C----CCceEeecCCCChhhHHH
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP------I----EGVIQVQGDITNARTAEV 110 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~------~----~~v~~~~gDi~~~~~~~~ 110 (249)
.++++|=.|+ +|+....+++++.. .+.+|+.++.++... + .++..+.+|+++.+....
T Consensus 8 ~~k~vlVtGa-s~gIG~~ia~~l~~-----------~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~ 75 (253)
T PRK05867 8 HGKRALITGA-STGIGKRVALAYVE-----------AGAQVAIAARHLDALEKLADEIGTSGGKVVPVCCDVSQHQQVTS 75 (253)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHH-----------CCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHH
Confidence 4678888886 56677777776642 245888888775320 1 245678899999876555
Q ss_pred HHHhcC--CCcccEEEeCCCC
Q 025715 111 VIRHFD--GCKADLVVCDGAP 129 (249)
Q Consensus 111 i~~~~~--~~~~DlVlsD~~~ 129 (249)
+.+.+. -+++|.++.+...
T Consensus 76 ~~~~~~~~~g~id~lv~~ag~ 96 (253)
T PRK05867 76 MLDQVTAELGGIDIAVCNAGI 96 (253)
T ss_pred HHHHHHHHhCCCCEEEECCCC
Confidence 443321 1479999988653
No 463
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=50.92 E-value=39 Score=31.29 Aligned_cols=95 Identities=11% Similarity=0.167 Sum_probs=60.8
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC--------------------CCCCceEee
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--------------------PIEGVIQVQ 99 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~--------------------~~~~v~~~~ 99 (249)
.++..+.|||+|-|.....++...+. .+=+|+++.... ....+..++
T Consensus 191 g~~D~F~DLGSGVGqlv~~~aa~a~~-------------k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~ 257 (419)
T KOG3924|consen 191 GPADVFMDLGSGVGQLVCFVAAYAGC-------------KKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIH 257 (419)
T ss_pred CCCCcccCCCcccchhhHHHHHhhcc-------------ccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecc
Confidence 68899999999999999888776542 344566665421 012356789
Q ss_pred cCCCChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEE
Q 025715 100 GDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFI 164 (249)
Q Consensus 100 gDi~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv 164 (249)
|+..++.....|. ...++|++|-.- .++....+ +...+.-+++|=+++
T Consensus 258 gsf~~~~~v~eI~-----~eatvi~vNN~~-------Fdp~L~lr-----~~eil~~ck~gtrIi 305 (419)
T KOG3924|consen 258 GSFLDPKRVTEIQ-----TEATVIFVNNVA-------FDPELKLR-----SKEILQKCKDGTRII 305 (419)
T ss_pred cccCCHHHHHHHh-----hcceEEEEeccc-------CCHHHHHh-----hHHHHhhCCCcceEe
Confidence 9999988776654 357888887421 23222221 224556677776655
No 464
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=50.83 E-value=82 Score=25.94 Aligned_cols=76 Identities=12% Similarity=0.088 Sum_probs=49.9
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC---------C-CCCceEeecCCCChhhHHH
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------P-IEGVIQVQGDITNARTAEV 110 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~---------~-~~~v~~~~gDi~~~~~~~~ 110 (249)
++.++|=.|+ .|+....+++.+.. ....|+.+|.++.. . -..+.+++.|+++.+....
T Consensus 4 ~~~~~lItG~-~g~iG~~~a~~l~~-----------~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 71 (253)
T PRK08217 4 KDKVIVITGG-AQGLGRAMAEYLAQ-----------KGAKLALIDLNQEKLEEAVAECGALGTEVRGYAANVTDEEDVEA 71 (253)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHH-----------CCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHH
Confidence 3568888885 67778877776642 23578888887531 0 1245678899999776555
Q ss_pred HHHhcCC--CcccEEEeCCC
Q 025715 111 VIRHFDG--CKADLVVCDGA 128 (249)
Q Consensus 111 i~~~~~~--~~~DlVlsD~~ 128 (249)
+.+.+.. +.+|.|+++..
T Consensus 72 ~~~~~~~~~~~id~vi~~ag 91 (253)
T PRK08217 72 TFAQIAEDFGQLNGLINNAG 91 (253)
T ss_pred HHHHHHHHcCCCCEEEECCC
Confidence 4443321 46899998864
No 465
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=50.54 E-value=75 Score=31.05 Aligned_cols=66 Identities=23% Similarity=0.205 Sum_probs=44.3
Q ss_pred eEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC----CCCCceEeecCCCChhhHHHHHHhcCCCc
Q 025715 44 RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----PIEGVIQVQGDITNARTAEVVIRHFDGCK 119 (249)
Q Consensus 44 ~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~----~~~~v~~~~gDi~~~~~~~~i~~~~~~~~ 119 (249)
+|+= ||-|.+.+.+++.+.. .+-.++.+|.++.. .-.+...+.||.++++.+++ ..-.+
T Consensus 402 ~vII--~G~Gr~G~~va~~L~~-----------~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~----agi~~ 464 (601)
T PRK03659 402 QVII--VGFGRFGQVIGRLLMA-----------NKMRITVLERDISAVNLMRKYGYKVYYGDATQLELLRA----AGAEK 464 (601)
T ss_pred CEEE--ecCchHHHHHHHHHHh-----------CCCCEEEEECCHHHHHHHHhCCCeEEEeeCCCHHHHHh----cCCcc
Confidence 4554 4566677777776641 23589999998753 12467789999999876533 33457
Q ss_pred ccEEEeC
Q 025715 120 ADLVVCD 126 (249)
Q Consensus 120 ~DlVlsD 126 (249)
.|.|++-
T Consensus 465 A~~vv~~ 471 (601)
T PRK03659 465 AEAIVIT 471 (601)
T ss_pred CCEEEEE
Confidence 8888764
No 466
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=50.32 E-value=20 Score=27.47 Aligned_cols=70 Identities=17% Similarity=0.283 Sum_probs=35.9
Q ss_pred eEeecCCCChhhHHHHHHhcCCCcccEEEeCC-CCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCCCHH
Q 025715 96 IQVQGDITNARTAEVVIRHFDGCKADLVVCDG-APDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTS 174 (249)
Q Consensus 96 ~~~~gDi~~~~~~~~i~~~~~~~~~DlVlsD~-~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~~ 174 (249)
+...||+.+ ....+. ..+|+|..|+ +|.. |.+-+. ...+....+++++||+|+. +.. ..
T Consensus 34 ~L~~gDa~~------~l~~l~-~~~Da~ylDgFsP~~----nPelWs-----~e~~~~l~~~~~~~~~l~T--ys~--a~ 93 (124)
T PF05430_consen 34 TLWFGDARE------MLPQLD-ARFDAWYLDGFSPAK----NPELWS-----EELFKKLARLSKPGGTLAT--YSS--AG 93 (124)
T ss_dssp EEEES-HHH------HHHHB--T-EEEEEE-SS-TTT----SGGGSS-----HHHHHHHHHHEEEEEEEEE--S----BH
T ss_pred EEEEcHHHH------HHHhCc-ccCCEEEecCCCCcC----CcccCC-----HHHHHHHHHHhCCCcEEEE--eec--hH
Confidence 445677643 223343 6899999998 3322 222110 2367778899999998774 322 23
Q ss_pred HHHHHHhcC-CC
Q 025715 175 LLYCQLKLF-FP 185 (249)
Q Consensus 175 ~l~~~l~~~-f~ 185 (249)
.+...|... |.
T Consensus 94 ~Vr~~L~~aGF~ 105 (124)
T PF05430_consen 94 AVRRALQQAGFE 105 (124)
T ss_dssp HHHHHHHHCTEE
T ss_pred HHHHHHHHcCCE
Confidence 355545443 55
No 467
>PRK09072 short chain dehydrogenase; Provisional
Probab=50.15 E-value=1.5e+02 Score=24.78 Aligned_cols=77 Identities=17% Similarity=0.101 Sum_probs=48.8
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC------C---CCCceEeecCCCChhhHHHH
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------P---IEGVIQVQGDITNARTAEVV 111 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~------~---~~~v~~~~gDi~~~~~~~~i 111 (249)
++.++|=.|++ |++...+++.+.. .+..|++++.++.. . -.++.++..|+.+.+....+
T Consensus 4 ~~~~vlItG~s-~~iG~~ia~~l~~-----------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~ 71 (263)
T PRK09072 4 KDKRVLLTGAS-GGIGQALAEALAA-----------AGARLLLVGRNAEKLEALAARLPYPGRHRWVVADLTSEAGREAV 71 (263)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHH-----------CCCEEEEEECCHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHH
Confidence 34577777755 6666666665531 24689999877521 0 12567889999998765554
Q ss_pred HHhcC-CCcccEEEeCCCC
Q 025715 112 IRHFD-GCKADLVVCDGAP 129 (249)
Q Consensus 112 ~~~~~-~~~~DlVlsD~~~ 129 (249)
.+... .+.+|.|+.....
T Consensus 72 ~~~~~~~~~id~lv~~ag~ 90 (263)
T PRK09072 72 LARAREMGGINVLINNAGV 90 (263)
T ss_pred HHHHHhcCCCCEEEECCCC
Confidence 43321 2468999988653
No 468
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=50.11 E-value=2.2e+02 Score=26.49 Aligned_cols=72 Identities=17% Similarity=0.084 Sum_probs=47.0
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC-------CCCceEeecCCCChhhHHHHHH
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP-------IEGVIQVQGDITNARTAEVVIR 113 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~-------~~~v~~~~gDi~~~~~~~~i~~ 113 (249)
.++++|=.| |+|++...+++.+.. .+.+|++++.++... ..++..+..|+.+.+....
T Consensus 177 ~gK~VLITG-ASgGIG~aLA~~La~-----------~G~~Vi~l~r~~~~l~~~~~~~~~~v~~v~~Dvsd~~~v~~--- 241 (406)
T PRK07424 177 KGKTVAVTG-ASGTLGQALLKELHQ-----------QGAKVVALTSNSDKITLEINGEDLPVKTLHWQVGQEAALAE--- 241 (406)
T ss_pred CCCEEEEeC-CCCHHHHHHHHHHHH-----------CCCEEEEEeCCHHHHHHHHhhcCCCeEEEEeeCCCHHHHHH---
Confidence 356787555 788889888876642 246888888765321 1135567889998764332
Q ss_pred hcCCCcccEEEeCCCC
Q 025715 114 HFDGCKADLVVCDGAP 129 (249)
Q Consensus 114 ~~~~~~~DlVlsD~~~ 129 (249)
.+ +.+|+++.+.+.
T Consensus 242 ~l--~~IDiLInnAGi 255 (406)
T PRK07424 242 LL--EKVDILIINHGI 255 (406)
T ss_pred Hh--CCCCEEEECCCc
Confidence 33 369999988654
No 469
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=50.00 E-value=1.5e+02 Score=24.61 Aligned_cols=76 Identities=20% Similarity=0.142 Sum_probs=48.4
Q ss_pred CCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC------C----CCceEeecCCCChhhHHHH
Q 025715 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP------I----EGVIQVQGDITNARTAEVV 111 (249)
Q Consensus 42 g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~------~----~~v~~~~gDi~~~~~~~~i 111 (249)
+.++|=.| |+|+....+++.+.. .+..|+.++.++... + ..+.++++|+++.+.....
T Consensus 7 ~~~vlItG-asg~iG~~la~~l~~-----------~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 74 (262)
T PRK13394 7 GKTAVVTG-AASGIGKEIALELAR-----------AGAAVAIADLNQDGANAVADEINKAGGKAIGVAMDVTNEDAVNAG 74 (262)
T ss_pred CCEEEEEC-CCChHHHHHHHHHHH-----------CCCeEEEEeCChHHHHHHHHHHHhcCceEEEEECCCCCHHHHHHH
Confidence 45677555 567888887776642 235788888876321 1 2356789999998765544
Q ss_pred HHhcC--CCcccEEEeCCCC
Q 025715 112 IRHFD--GCKADLVVCDGAP 129 (249)
Q Consensus 112 ~~~~~--~~~~DlVlsD~~~ 129 (249)
..... .+.+|.|+.....
T Consensus 75 ~~~~~~~~~~~d~vi~~ag~ 94 (262)
T PRK13394 75 IDKVAERFGSVDILVSNAGI 94 (262)
T ss_pred HHHHHHHcCCCCEEEECCcc
Confidence 33221 1468999888653
No 470
>PRK03525 crotonobetainyl-CoA:carnitine CoA-transferase; Provisional
Probab=49.69 E-value=71 Score=29.58 Aligned_cols=70 Identities=11% Similarity=0.088 Sum_probs=40.6
Q ss_pred CCCeEEEEcCC-CChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCC----CCC--------CCCceEeecCCCChhh
Q 025715 41 GVKRVVDLCAA-PGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQP----MAP--------IEGVIQVQGDITNART 107 (249)
Q Consensus 41 ~g~~vLDLG~g-pG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~----~~~--------~~~v~~~~gDi~~~~~ 107 (249)
.|.+|||++.. +|-+...++.-+| ..||=|+.-. .+. -.|-+.+.-|+.+++-
T Consensus 13 ~GirVldls~~~aGP~a~~lLAdlG--------------AeVIKVE~p~~GD~~R~~~~~~~~~NrgKrsi~LDLk~~~G 78 (405)
T PRK03525 13 AGLRVVFSGIEIAGPFAGQMFAEWG--------------AEVIWIENVAWADTIRVQPNYPQLSRRNLHALSLNIFKDEG 78 (405)
T ss_pred CCCEEEEecchhHHHHHHHHHHHcC--------------CcEEEECCCCCCCccccccchhhhccCCCeeEEEeCCCHHH
Confidence 47899999864 5666665555555 6777777321 111 0244556677777665
Q ss_pred HHHHHHhcCCCcccEEEeC
Q 025715 108 AEVVIRHFDGCKADLVVCD 126 (249)
Q Consensus 108 ~~~i~~~~~~~~~DlVlsD 126 (249)
.+.+.+.+ ...|+|+.|
T Consensus 79 r~~l~~Li--~~ADVvien 95 (405)
T PRK03525 79 REAFLKLM--ETTDIFIEA 95 (405)
T ss_pred HHHHHHHH--HhCCEEEEC
Confidence 44443333 246666665
No 471
>PRK07062 short chain dehydrogenase; Provisional
Probab=49.52 E-value=1.6e+02 Score=24.71 Aligned_cols=76 Identities=7% Similarity=-0.010 Sum_probs=48.5
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC----------CC--CceEeecCCCChhhH
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----------IE--GVIQVQGDITNARTA 108 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~----------~~--~v~~~~gDi~~~~~~ 108 (249)
.+.++|=.|++ |+....+++.+.. .+.+|+.++.++... .+ .+..+..|+++.+..
T Consensus 7 ~~k~~lItGas-~giG~~ia~~l~~-----------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v 74 (265)
T PRK07062 7 EGRVAVVTGGS-SGIGLATVELLLE-----------AGASVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADV 74 (265)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHH-----------CCCeEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHH
Confidence 35678888854 5666666665531 246888888876320 11 355778999998766
Q ss_pred HHHHHhcC--CCcccEEEeCCC
Q 025715 109 EVVIRHFD--GCKADLVVCDGA 128 (249)
Q Consensus 109 ~~i~~~~~--~~~~DlVlsD~~ 128 (249)
..+.+... -+.+|.++.+..
T Consensus 75 ~~~~~~~~~~~g~id~li~~Ag 96 (265)
T PRK07062 75 AAFAAAVEARFGGVDMLVNNAG 96 (265)
T ss_pred HHHHHHHHHhcCCCCEEEECCC
Confidence 55443321 146999998864
No 472
>PRK06484 short chain dehydrogenase; Validated
Probab=49.22 E-value=2.3e+02 Score=26.58 Aligned_cols=76 Identities=11% Similarity=0.066 Sum_probs=48.4
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC------CC-CCceEeecCCCChhhHHHHHH
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PI-EGVIQVQGDITNARTAEVVIR 113 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~------~~-~~v~~~~gDi~~~~~~~~i~~ 113 (249)
+++++|=.|++. +....+++.+.. ....|+.++.++.. .+ .++.++..|+++.+..+.+.+
T Consensus 4 ~~k~~lITGas~-gIG~aia~~l~~-----------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 71 (520)
T PRK06484 4 QSRVVLVTGAAG-GIGRAACQRFAR-----------AGDQVVVADRNVERARERADSLGPDHHALAMDVSDEAQIREGFE 71 (520)
T ss_pred CCeEEEEECCCc-HHHHHHHHHHHH-----------CCCEEEEEeCCHHHHHHHHHHhCCceeEEEeccCCHHHHHHHHH
Confidence 456777777655 466666665541 23688888876532 11 245668899999876655544
Q ss_pred hcC--CCcccEEEeCCC
Q 025715 114 HFD--GCKADLVVCDGA 128 (249)
Q Consensus 114 ~~~--~~~~DlVlsD~~ 128 (249)
.+. .+.+|+++.+..
T Consensus 72 ~~~~~~g~iD~li~nag 88 (520)
T PRK06484 72 QLHREFGRIDVLVNNAG 88 (520)
T ss_pred HHHHHhCCCCEEEECCC
Confidence 321 146999998864
No 473
>PRK07109 short chain dehydrogenase; Provisional
Probab=48.89 E-value=1.9e+02 Score=25.60 Aligned_cols=76 Identities=14% Similarity=0.072 Sum_probs=48.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC------CC----CCceEeecCCCChhhHHHH
Q 025715 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PI----EGVIQVQGDITNARTAEVV 111 (249)
Q Consensus 42 g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~------~~----~~v~~~~gDi~~~~~~~~i 111 (249)
+.+||=.| |+|+....+++.+.. .+.+|+.++.++.. .+ .++.++.+|+++.+..+.+
T Consensus 8 ~k~vlITG-as~gIG~~la~~la~-----------~G~~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v~~Dv~d~~~v~~~ 75 (334)
T PRK07109 8 RQVVVITG-ASAGVGRATARAFAR-----------RGAKVVLLARGEEGLEALAAEIRAAGGEALAVVADVADAEAVQAA 75 (334)
T ss_pred CCEEEEEC-CCCHHHHHHHHHHHH-----------CCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHH
Confidence 45677777 567777777776641 23678888876521 01 2456788999998766554
Q ss_pred HHhcC--CCcccEEEeCCCC
Q 025715 112 IRHFD--GCKADLVVCDGAP 129 (249)
Q Consensus 112 ~~~~~--~~~~DlVlsD~~~ 129 (249)
.+... -+.+|+++.+...
T Consensus 76 ~~~~~~~~g~iD~lInnAg~ 95 (334)
T PRK07109 76 ADRAEEELGPIDTWVNNAMV 95 (334)
T ss_pred HHHHHHHCCCCCEEEECCCc
Confidence 43221 1479999988653
No 474
>PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B ....
Probab=48.86 E-value=23 Score=29.58 Aligned_cols=108 Identities=17% Similarity=0.171 Sum_probs=62.8
Q ss_pred cCC-CChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC---------CCCceEeecCCCChhhHHHHHHh----
Q 025715 49 CAA-PGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP---------IEGVIQVQGDITNARTAEVVIRH---- 114 (249)
Q Consensus 49 G~g-pG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~---------~~~v~~~~gDi~~~~~~~~i~~~---- 114 (249)
|+| ++++...+++.+.. .+.+|+.++.++... ..+..++..|+++.+..+.+.+.
T Consensus 1 g~~~s~GiG~aia~~l~~-----------~Ga~V~~~~~~~~~~~~~~~~l~~~~~~~~~~~D~~~~~~v~~~~~~~~~~ 69 (241)
T PF13561_consen 1 GAGSSSGIGRAIARALAE-----------EGANVILTDRNEEKLADALEELAKEYGAEVIQCDLSDEESVEALFDEAVER 69 (241)
T ss_dssp STSSTSHHHHHHHHHHHH-----------TTEEEEEEESSHHHHHHHHHHHHHHTTSEEEESCTTSHHHHHHHHHHHHHH
T ss_pred CCCCCCChHHHHHHHHHH-----------CCCEEEEEeCChHHHHHHHHHHHHHcCCceEeecCcchHHHHHHHHHHHhh
Confidence 344 57788887776642 346899999887431 12355789999998776655433
Q ss_pred cCCCcccEEEeCCCCCCC-----CCCCcCHHHH---HH----HHHHHHHHHHHhccCCCEEEEEEe
Q 025715 115 FDGCKADLVVCDGAPDVT-----GLHDMDEFVQ---SQ----LILAGLTVVTHVLKEGGKFIAKIF 168 (249)
Q Consensus 115 ~~~~~~DlVlsD~~~~~~-----g~~~~~~~~~---~~----l~~~~l~~a~~~Lk~gG~lv~k~~ 168 (249)
+. +.+|.++.+...... ...+.+.... .+ -.......+...++++|+++....
T Consensus 70 ~~-g~iD~lV~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsii~iss 134 (241)
T PF13561_consen 70 FG-GRIDILVNNAGISPPSNVEKPLLDLSEEDWDKTFDINVFSPFLLAQAALPLMKKGGSIINISS 134 (241)
T ss_dssp HC-SSESEEEEEEESCTGGGTSSSGGGSHHHHHHHHHHHHTHHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred cC-CCeEEEEecccccccccCCCChHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccccc
Confidence 32 579988877532221 1111111111 11 113345556668889999886543
No 475
>PRK06057 short chain dehydrogenase; Provisional
Probab=48.81 E-value=57 Score=27.32 Aligned_cols=76 Identities=16% Similarity=0.138 Sum_probs=49.0
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC-----CCCceEeecCCCChhhHHHHHHhc
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP-----IEGVIQVQGDITNARTAEVVIRHF 115 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~-----~~~v~~~~gDi~~~~~~~~i~~~~ 115 (249)
.|.+||=.|+ +|+....+++++.. ....|+.+|.++... .-+..+++.|+++.+....+.+..
T Consensus 6 ~~~~vlItGa-sggIG~~~a~~l~~-----------~G~~v~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 73 (255)
T PRK06057 6 AGRVAVITGG-GSGIGLATARRLAA-----------EGATVVVGDIDPEAGKAAADEVGGLFVPTDVTDEDAVNALFDTA 73 (255)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHH-----------cCCEEEEEeCCHHHHHHHHHHcCCcEEEeeCCCHHHHHHHHHHH
Confidence 3578998887 46778888777642 246888888875321 012256788999977655444322
Q ss_pred C--CCcccEEEeCCC
Q 025715 116 D--GCKADLVVCDGA 128 (249)
Q Consensus 116 ~--~~~~DlVlsD~~ 128 (249)
. .+++|.|+.+..
T Consensus 74 ~~~~~~id~vi~~ag 88 (255)
T PRK06057 74 AETYGSVDIAFNNAG 88 (255)
T ss_pred HHHcCCCCEEEECCC
Confidence 1 146899988754
No 476
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=48.65 E-value=17 Score=32.83 Aligned_cols=22 Identities=23% Similarity=0.204 Sum_probs=15.8
Q ss_pred cCCCeEEEEcCCCChHHHHHHH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSR 61 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~ 61 (249)
....+|+|+||+.|.-|..+..
T Consensus 15 ~~~~~iaD~GcS~G~Nsl~~~~ 36 (334)
T PF03492_consen 15 PKPFRIADLGCSSGPNSLLAVS 36 (334)
T ss_dssp TTEEEEEEES--SSHHHHHHHH
T ss_pred CCceEEEecCCCCCccHHHHHH
Confidence 3457999999999999986544
No 477
>PRK07024 short chain dehydrogenase; Provisional
Probab=48.53 E-value=1.3e+02 Score=25.09 Aligned_cols=75 Identities=16% Similarity=0.137 Sum_probs=48.3
Q ss_pred CeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC------CC---CCceEeecCCCChhhHHHHHH
Q 025715 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PI---EGVIQVQGDITNARTAEVVIR 113 (249)
Q Consensus 43 ~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~------~~---~~v~~~~gDi~~~~~~~~i~~ 113 (249)
++||=.|+ +|+....+++.+.. .+..|+.+|.++.. .+ .++.++.+|+++.+......+
T Consensus 3 ~~vlItGa-s~gIG~~la~~l~~-----------~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~i~~~~~ 70 (257)
T PRK07024 3 LKVFITGA-SSGIGQALAREYAR-----------QGATLGLVARRTDALQAFAARLPKAARVSVYAADVRDADALAAAAA 70 (257)
T ss_pred CEEEEEcC-CcHHHHHHHHHHHH-----------CCCEEEEEeCCHHHHHHHHHhcccCCeeEEEEcCCCCHHHHHHHHH
Confidence 46666664 77888888777642 23578888876421 11 157788999999776544433
Q ss_pred hc--CCCcccEEEeCCCC
Q 025715 114 HF--DGCKADLVVCDGAP 129 (249)
Q Consensus 114 ~~--~~~~~DlVlsD~~~ 129 (249)
.+ ..+.+|+++.+...
T Consensus 71 ~~~~~~g~id~lv~~ag~ 88 (257)
T PRK07024 71 DFIAAHGLPDVVIANAGI 88 (257)
T ss_pred HHHHhCCCCCEEEECCCc
Confidence 22 12468999998753
No 478
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=48.38 E-value=19 Score=33.85 Aligned_cols=31 Identities=19% Similarity=0.138 Sum_probs=23.8
Q ss_pred CeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCC
Q 025715 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQ 87 (249)
Q Consensus 43 ~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~ 87 (249)
-.|||+|+|+|-.|..+....+ -.|+|++..
T Consensus 68 v~vLdigtGTGLLSmMAvraga--------------D~vtA~Evf 98 (636)
T KOG1501|consen 68 VFVLDIGTGTGLLSMMAVRAGA--------------DSVTACEVF 98 (636)
T ss_pred EEEEEccCCccHHHHHHHHhcC--------------CeEEeehhh
Confidence 3699999999999987776543 357777765
No 479
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=48.09 E-value=1.8e+02 Score=25.08 Aligned_cols=71 Identities=20% Similarity=0.145 Sum_probs=46.8
Q ss_pred CCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC------------CCCceEeecCCCChhhHH
Q 025715 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP------------IEGVIQVQGDITNARTAE 109 (249)
Q Consensus 42 g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~------------~~~v~~~~gDi~~~~~~~ 109 (249)
+++||=.| |+|....++++++-. .+.+|++++.++... .++++++.+|+++.....
T Consensus 4 ~~~ilVtG-atGfIG~~l~~~L~~-----------~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~ 71 (322)
T PLN02662 4 GKVVCVTG-ASGYIASWLVKLLLQ-----------RGYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFD 71 (322)
T ss_pred CCEEEEEC-ChHHHHHHHHHHHHH-----------CCCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHH
Confidence 46777666 478888888877641 235787777654320 135788999999876543
Q ss_pred HHHHhcCCCcccEEEeCCCC
Q 025715 110 VVIRHFDGCKADLVVCDGAP 129 (249)
Q Consensus 110 ~i~~~~~~~~~DlVlsD~~~ 129 (249)
.+ +. .+|.|+...++
T Consensus 72 ~~---~~--~~d~Vih~A~~ 86 (322)
T PLN02662 72 SV---VD--GCEGVFHTASP 86 (322)
T ss_pred HH---Hc--CCCEEEEeCCc
Confidence 33 23 48999887654
No 480
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=47.99 E-value=1.4e+02 Score=23.90 Aligned_cols=124 Identities=19% Similarity=0.120 Sum_probs=64.4
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCC-CCCCCceEeecCCCChhhHHHHHHhcCCCc
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM-APIEGVIQVQGDITNARTAEVVIRHFDGCK 119 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~-~~~~~v~~~~gDi~~~~~~~~i~~~~~~~~ 119 (249)
++.+|+=|||=+-.. .+.+... +...++-.|...- ..+.+-.+..-|...+.. +.+.+ .++
T Consensus 25 ~~~~iaclstPsl~~--~l~~~~~------------~~~~~~Lle~D~RF~~~~~~~F~fyD~~~p~~---~~~~l-~~~ 86 (162)
T PF10237_consen 25 DDTRIACLSTPSLYE--ALKKESK------------PRIQSFLLEYDRRFEQFGGDEFVFYDYNEPEE---LPEEL-KGK 86 (162)
T ss_pred CCCEEEEEeCcHHHH--HHHhhcC------------CCccEEEEeecchHHhcCCcceEECCCCChhh---hhhhc-CCC
Confidence 557898888754332 2333111 2356666666642 223321466667777643 44455 469
Q ss_pred ccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCCCHHHHHHHHhcCCCeeEEecCCCCCC
Q 025715 120 ADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRN 197 (249)
Q Consensus 120 ~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~~~l~~~l~~~f~~v~~~kP~~sr~ 197 (249)
+|+|++|+++- .+. ........+..++++++.+++. .+....+++..+- -++.. .++|...+.
T Consensus 87 ~d~vv~DPPFl-------~~e----c~~k~a~ti~~L~k~~~kii~~--Tg~~~~~~~~~ll-~~~~~-~f~p~h~~~ 149 (162)
T PF10237_consen 87 FDVVVIDPPFL-------SEE----CLTKTAETIRLLLKPGGKIILC--TGEEMEELIKKLL-GLRMC-DFQPEHPNN 149 (162)
T ss_pred ceEEEECCCCC-------CHH----HHHHHHHHHHHHhCccceEEEe--cHHHHHHHHHHHh-CeeEE-eEEeccccC
Confidence 99999999762 121 1222334445566777777653 2333433333221 13322 356766553
No 481
>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional
Probab=47.63 E-value=93 Score=26.33 Aligned_cols=78 Identities=8% Similarity=-0.047 Sum_probs=49.9
Q ss_pred CCCeEEEEcC-CCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC---------CCCCceEeecCCCChhhHHH
Q 025715 41 GVKRVVDLCA-APGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------PIEGVIQVQGDITNARTAEV 110 (249)
Q Consensus 41 ~g~~vLDLG~-gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~---------~~~~v~~~~gDi~~~~~~~~ 110 (249)
.+.++|=-|+ +.++....+++.+.. ....|+..+..... .......++.|+.+.+..+.
T Consensus 5 ~~k~~lITGa~~~~GIG~a~a~~l~~-----------~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~ 73 (261)
T PRK08690 5 QGKKILITGMISERSIAYGIAKACRE-----------QGAELAFTYVVDKLEERVRKMAAELDSELVFRCDVASDDEINQ 73 (261)
T ss_pred CCcEEEEECCCCCCcHHHHHHHHHHH-----------CCCEEEEEcCcHHHHHHHHHHHhccCCceEEECCCCCHHHHHH
Confidence 3568888887 578888888887752 23567665543210 11234467899999876655
Q ss_pred HHHhcC--CCcccEEEeCCCC
Q 025715 111 VIRHFD--GCKADLVVCDGAP 129 (249)
Q Consensus 111 i~~~~~--~~~~DlVlsD~~~ 129 (249)
+.+... -+++|+++.+...
T Consensus 74 ~~~~~~~~~g~iD~lVnnAG~ 94 (261)
T PRK08690 74 VFADLGKHWDGLDGLVHSIGF 94 (261)
T ss_pred HHHHHHHHhCCCcEEEECCcc
Confidence 443321 1479999999754
No 482
>PRK05854 short chain dehydrogenase; Provisional
Probab=47.58 E-value=1.9e+02 Score=25.23 Aligned_cols=75 Identities=13% Similarity=0.092 Sum_probs=48.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC------C----C--CCceEeecCCCChhhHH
Q 025715 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------P----I--EGVIQVQGDITNARTAE 109 (249)
Q Consensus 42 g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~------~----~--~~v~~~~gDi~~~~~~~ 109 (249)
|.++|=.|+ +|+....+++.+.. .+.+|+.++.++.. . . .++.++..|+.+.+...
T Consensus 14 gk~~lITGa-s~GIG~~~a~~La~-----------~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~ 81 (313)
T PRK05854 14 GKRAVVTGA-SDGLGLGLARRLAA-----------AGAEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVA 81 (313)
T ss_pred CCEEEEeCC-CChHHHHHHHHHHH-----------CCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHH
Confidence 567776665 56777777776642 24688888776421 0 1 24678899999987665
Q ss_pred HHHHhcC--CCcccEEEeCCC
Q 025715 110 VVIRHFD--GCKADLVVCDGA 128 (249)
Q Consensus 110 ~i~~~~~--~~~~DlVlsD~~ 128 (249)
.+.+.+. .+.+|+++.+..
T Consensus 82 ~~~~~~~~~~~~iD~li~nAG 102 (313)
T PRK05854 82 ALGEQLRAEGRPIHLLINNAG 102 (313)
T ss_pred HHHHHHHHhCCCccEEEECCc
Confidence 5544332 257999999875
No 483
>COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism]
Probab=47.40 E-value=88 Score=28.29 Aligned_cols=69 Identities=19% Similarity=0.189 Sum_probs=47.2
Q ss_pred CCCeEEEEcCCCChHHHHH-HHHhcCCCCCCCCCCCCCCCeEEEecCCCCCCCCCc--eEeecCCCChhhHHHHHHhcCC
Q 025715 41 GVKRVVDLCAAPGSWSQVL-SRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGV--IQVQGDITNARTAEVVIRHFDG 117 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l-~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~~~~v--~~~~gDi~~~~~~~~i~~~~~~ 117 (249)
...+|+=||+|-=|.-.++ +++++ .+|+|||....++--.| .....|++|.+.+..+.+.
T Consensus 11 ~a~kvmLLGSGELGKEvaIe~QRLG--------------~eViAVDrY~~APAmqVAhrs~Vi~MlD~~al~avv~r--- 73 (394)
T COG0027 11 QATKVMLLGSGELGKEVAIEAQRLG--------------VEVIAVDRYANAPAMQVAHRSYVIDMLDGDALRAVVER--- 73 (394)
T ss_pred CCeEEEEecCCccchHHHHHHHhcC--------------CEEEEecCcCCChhhhhhhheeeeeccCHHHHHHHHHh---
Confidence 3568999999977766554 67776 79999999887642111 1244688888777666543
Q ss_pred CcccEEEeC
Q 025715 118 CKADLVVCD 126 (249)
Q Consensus 118 ~~~DlVlsD 126 (249)
.+.|.|+--
T Consensus 74 ekPd~IVpE 82 (394)
T COG0027 74 EKPDYIVPE 82 (394)
T ss_pred hCCCeeeeh
Confidence 456777743
No 484
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=47.03 E-value=1.5e+02 Score=26.53 Aligned_cols=95 Identities=15% Similarity=0.045 Sum_probs=49.8
Q ss_pred ccCCCeEEEEcCCCChHHHHHH---HHhcCCCCCCCCCCCCCCCeEEEecCCCCCC--C--CCce-EeecCCCChhhHHH
Q 025715 39 FEGVKRVVDLCAAPGSWSQVLS---RKLYLPAKLSPDSREGDLPLIVAIDLQPMAP--I--EGVI-QVQGDITNARTAEV 110 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~l~---~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~--~--~~v~-~~~gDi~~~~~~~~ 110 (249)
+++|.+||=.|+ |+....+. +.++ ..+|+++|.++.+. . -++. ++...-.+.+....
T Consensus 182 ~~~g~~vlV~G~--g~vG~~~~~~a~~~G-------------~~~Vi~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~ 246 (365)
T cd08277 182 VEPGSTVAVFGL--GAVGLSAIMGAKIAG-------------ASRIIGVDINEDKFEKAKEFGATDFINPKDSDKPVSEV 246 (365)
T ss_pred CCCCCEEEEECC--CHHHHHHHHHHHHcC-------------CCeEEEEeCCHHHHHHHHHcCCCcEeccccccchHHHH
Confidence 467889888874 66666543 3333 12788998875321 0 1221 11111011111222
Q ss_pred HHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCC-CEEEEE
Q 025715 111 VIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEG-GKFIAK 166 (249)
Q Consensus 111 i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~g-G~lv~k 166 (249)
+.+... +.+|+|+-- .|. . ..+..+.+.|+++ |++++-
T Consensus 247 ~~~~~~-~g~d~vid~-----~g~---~---------~~~~~~~~~l~~~~G~~v~~ 285 (365)
T cd08277 247 IREMTG-GGVDYSFEC-----TGN---A---------DLMNEALESTKLGWGVSVVV 285 (365)
T ss_pred HHHHhC-CCCCEEEEC-----CCC---h---------HHHHHHHHhcccCCCEEEEE
Confidence 333233 569999842 221 0 2456678889886 999864
No 485
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=46.98 E-value=1.7e+02 Score=24.38 Aligned_cols=76 Identities=13% Similarity=0.071 Sum_probs=49.8
Q ss_pred CCeEEEEcCCC-ChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCC-----------C------CC----CCceEee
Q 025715 42 VKRVVDLCAAP-GSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM-----------A------PI----EGVIQVQ 99 (249)
Q Consensus 42 g~~vLDLG~gp-G~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~-----------~------~~----~~v~~~~ 99 (249)
+.++|=.|++. |+....+++.+.. .+..|+.++.++. . .+ ..+.++.
T Consensus 5 ~k~vlItGas~~~giG~~la~~l~~-----------~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (256)
T PRK12748 5 KKIALVTGASRLNGIGAAVCRRLAA-----------KGIDIFFTYWSPYDKTMPWGMHDKEPVLLKEEIESYGVRCEHME 73 (256)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHH-----------cCCcEEEEcCCccccccccccchhhHHHHHHHHHhcCCeEEEEE
Confidence 46788888774 7888888887742 2357888877621 0 01 2467889
Q ss_pred cCCCChhhHHHHHHhcC--CCcccEEEeCCC
Q 025715 100 GDITNARTAEVVIRHFD--GCKADLVVCDGA 128 (249)
Q Consensus 100 gDi~~~~~~~~i~~~~~--~~~~DlVlsD~~ 128 (249)
.|+++.+......+.+. .+.+|.|+.+..
T Consensus 74 ~D~~~~~~~~~~~~~~~~~~g~id~vi~~ag 104 (256)
T PRK12748 74 IDLSQPYAPNRVFYAVSERLGDPSILINNAA 104 (256)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCCEEEECCC
Confidence 99999776544433321 146999998864
No 486
>PRK07774 short chain dehydrogenase; Provisional
Probab=46.86 E-value=77 Score=26.22 Aligned_cols=75 Identities=21% Similarity=0.182 Sum_probs=48.7
Q ss_pred CCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC------CC----CCceEeecCCCChhhHHHH
Q 025715 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PI----EGVIQVQGDITNARTAEVV 111 (249)
Q Consensus 42 g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~------~~----~~v~~~~gDi~~~~~~~~i 111 (249)
+.++|=.| |+|+....+++.+.. .+.+|+.++.++.. .+ .++.++..|+++.+....+
T Consensus 6 ~k~vlItG-asg~iG~~la~~l~~-----------~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 73 (250)
T PRK07774 6 DKVAIVTG-AAGGIGQAYAEALAR-----------EGASVVVADINAEGAERVAKQIVADGGTAIAVQVDVSDPDSAKAM 73 (250)
T ss_pred CCEEEEEC-CCchHHHHHHHHHHH-----------CCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHH
Confidence 46777666 677888888776642 23688888887531 01 2456788999998765444
Q ss_pred HHhcC--CCcccEEEeCCC
Q 025715 112 IRHFD--GCKADLVVCDGA 128 (249)
Q Consensus 112 ~~~~~--~~~~DlVlsD~~ 128 (249)
.+... .+.+|.|+++..
T Consensus 74 ~~~~~~~~~~id~vi~~ag 92 (250)
T PRK07774 74 ADATVSAFGGIDYLVNNAA 92 (250)
T ss_pred HHHHHHHhCCCCEEEECCC
Confidence 33221 136899998865
No 487
>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional
Probab=45.70 E-value=2.1e+02 Score=25.17 Aligned_cols=71 Identities=20% Similarity=0.195 Sum_probs=43.1
Q ss_pred eEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCe-EEEecCCCCC-------CC---CCceEeecCCCChhhHHHHH
Q 025715 44 RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPL-IVAIDLQPMA-------PI---EGVIQVQGDITNARTAEVVI 112 (249)
Q Consensus 44 ~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~-vvavDi~~~~-------~~---~~v~~~~gDi~~~~~~~~i~ 112 (249)
+||=.| |+|....++++.+-. .... ++.+|..+.. .. .++.++.+|+++.+....+.
T Consensus 3 ~vlVtG-atGfIG~~l~~~L~~-----------~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~ 70 (355)
T PRK10217 3 KILITG-GAGFIGSALVRYIIN-----------ETSDAVVVVDKLTYAGNLMSLAPVAQSERFAFEKVDICDRAELARVF 70 (355)
T ss_pred EEEEEc-CCcHHHHHHHHHHHH-----------cCCCEEEEEecCccccchhhhhhcccCCceEEEECCCcChHHHHHHH
Confidence 455555 688888888887641 1223 4455643211 11 24667889999977655443
Q ss_pred HhcCCCcccEEEeCCCC
Q 025715 113 RHFDGCKADLVVCDGAP 129 (249)
Q Consensus 113 ~~~~~~~~DlVlsD~~~ 129 (249)
....+|.|+..++.
T Consensus 71 ---~~~~~D~Vih~A~~ 84 (355)
T PRK10217 71 ---TEHQPDCVMHLAAE 84 (355)
T ss_pred ---hhcCCCEEEECCcc
Confidence 33468999888754
No 488
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=45.24 E-value=1.8e+02 Score=25.39 Aligned_cols=92 Identities=16% Similarity=0.039 Sum_probs=48.7
Q ss_pred ccCC--CeEEEEcCCCChHHHH---HHHHhcCCCCCCCCCCCCCCC-eEEEecCCCCC-----CCCCceEeecCCCChhh
Q 025715 39 FEGV--KRVVDLCAAPGSWSQV---LSRKLYLPAKLSPDSREGDLP-LIVAIDLQPMA-----PIEGVIQVQGDITNART 107 (249)
Q Consensus 39 ~~~g--~~vLDLG~gpG~~s~~---l~~~~~~~~~~~~~~~~~~~~-~vvavDi~~~~-----~~~~v~~~~gDi~~~~~ 107 (249)
+++| .+||=.|+ +|+.... +++.++ . +|++++.++.+ .--|+..+ -|..+...
T Consensus 150 ~~~g~~~~VlI~ga-~g~vG~~aiqlAk~~G--------------~~~Vi~~~~s~~~~~~~~~~lGa~~v-i~~~~~~~ 213 (345)
T cd08293 150 ITPGANQTMVVSGA-AGACGSLAGQIGRLLG--------------CSRVVGICGSDEKCQLLKSELGFDAA-INYKTDNV 213 (345)
T ss_pred CCCCCCCEEEEECC-CcHHHHHHHHHHHHcC--------------CCEEEEEcCCHHHHHHHHHhcCCcEE-EECCCCCH
Confidence 3455 78888775 3444443 454443 4 78888776532 10232211 12222222
Q ss_pred HHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEE
Q 025715 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIA 165 (249)
Q Consensus 108 ~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~ 165 (249)
.+.+.+. .++.+|+|+.- .|. ..+..+.+.|+++|+++.
T Consensus 214 ~~~i~~~-~~~gvd~vid~-----~g~-------------~~~~~~~~~l~~~G~iv~ 252 (345)
T cd08293 214 AERLREL-CPEGVDVYFDN-----VGG-------------EISDTVISQMNENSHIIL 252 (345)
T ss_pred HHHHHHH-CCCCceEEEEC-----CCc-------------HHHHHHHHHhccCCEEEE
Confidence 2333333 23579999842 111 123566789999999986
No 489
>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional
Probab=45.07 E-value=2.2e+02 Score=25.08 Aligned_cols=72 Identities=15% Similarity=0.159 Sum_probs=43.6
Q ss_pred eEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-------C---CCCceEeecCCCChhhHHHHHH
Q 025715 44 RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-------P---IEGVIQVQGDITNARTAEVVIR 113 (249)
Q Consensus 44 ~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-------~---~~~v~~~~gDi~~~~~~~~i~~ 113 (249)
+||=.| |+|....++++.+-.. ....|+++|..... . -.++.++.+|+++.+......+
T Consensus 2 kilITG-gtG~iG~~l~~~L~~~----------g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~ 70 (352)
T PRK10084 2 KILVTG-GAGFIGSAVVRHIINN----------TQDSVVNVDKLTYAGNLESLADVSDSERYVFEHADICDRAELDRIFA 70 (352)
T ss_pred eEEEEC-CCcHHhHHHHHHHHHh----------CCCeEEEecCCCccchHHHHHhcccCCceEEEEecCCCHHHHHHHHH
Confidence 445445 6788888888776410 01246677754311 1 1245678999999876554443
Q ss_pred hcCCCcccEEEeCCCC
Q 025715 114 HFDGCKADLVVCDGAP 129 (249)
Q Consensus 114 ~~~~~~~DlVlsD~~~ 129 (249)
...+|.|+...+.
T Consensus 71 ---~~~~d~vih~A~~ 83 (352)
T PRK10084 71 ---QHQPDAVMHLAAE 83 (352)
T ss_pred ---hcCCCEEEECCcc
Confidence 2468999887753
No 490
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.83 E-value=45 Score=27.22 Aligned_cols=37 Identities=14% Similarity=0.244 Sum_probs=24.0
Q ss_pred CcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEE
Q 025715 118 CKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIA 165 (249)
Q Consensus 118 ~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~ 165 (249)
..||.|++-- +. ..++.. .+....+..+|+|.|.-.+
T Consensus 102 ~tFDiIlaAD---Cl---FfdE~h-----~sLvdtIk~lL~p~g~Al~ 138 (201)
T KOG3201|consen 102 HTFDIILAAD---CL---FFDEHH-----ESLVDTIKSLLRPSGRALL 138 (201)
T ss_pred CcccEEEecc---ch---hHHHHH-----HHHHHHHHHHhCcccceeE
Confidence 5899999742 21 123322 3456777899999999543
No 491
>PRK06194 hypothetical protein; Provisional
Probab=44.80 E-value=1.9e+02 Score=24.45 Aligned_cols=76 Identities=18% Similarity=0.079 Sum_probs=48.8
Q ss_pred CCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC------CC----CCceEeecCCCChhhHHHH
Q 025715 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PI----EGVIQVQGDITNARTAEVV 111 (249)
Q Consensus 42 g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~------~~----~~v~~~~gDi~~~~~~~~i 111 (249)
+.++|=.| |+|+....+++++.. .+.+|+.+|.++.. .+ .++.++.+|+++.+....+
T Consensus 6 ~k~vlVtG-asggIG~~la~~l~~-----------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~ 73 (287)
T PRK06194 6 GKVAVITG-AASGFGLAFARIGAA-----------LGMKLVLADVQQDALDRAVAELRAQGAEVLGVRTDVSDAAQVEAL 73 (287)
T ss_pred CCEEEEeC-CccHHHHHHHHHHHH-----------CCCEEEEEeCChHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHH
Confidence 45778666 557778777776642 24688888876421 01 2456689999998765544
Q ss_pred HHhcC--CCcccEEEeCCCC
Q 025715 112 IRHFD--GCKADLVVCDGAP 129 (249)
Q Consensus 112 ~~~~~--~~~~DlVlsD~~~ 129 (249)
.+... .+.+|+|+++...
T Consensus 74 ~~~~~~~~g~id~vi~~Ag~ 93 (287)
T PRK06194 74 ADAALERFGAVHLLFNNAGV 93 (287)
T ss_pred HHHHHHHcCCCCEEEECCCC
Confidence 43221 1468999998754
No 492
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=44.65 E-value=1.5e+02 Score=25.51 Aligned_cols=92 Identities=12% Similarity=-0.005 Sum_probs=49.6
Q ss_pred ccCCCeEEEEcCCCChHHHH---HHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC--C--CCceEeecCCCChhhHHHH
Q 025715 39 FEGVKRVVDLCAAPGSWSQV---LSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP--I--EGVIQVQGDITNARTAEVV 111 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~---l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~--~--~~v~~~~gDi~~~~~~~~i 111 (249)
+++|.+||=.|+ +|+.... +++..+ .+|++++.++.+. + .++..+ -|-.+.+....+
T Consensus 141 ~~~g~~vlI~ga-~g~vG~~aiqlA~~~G--------------~~vi~~~~s~~~~~~l~~~Ga~~v-i~~~~~~~~~~v 204 (329)
T cd08294 141 PKAGETVVVNGA-AGAVGSLVGQIAKIKG--------------CKVIGCAGSDDKVAWLKELGFDAV-FNYKTVSLEEAL 204 (329)
T ss_pred CCCCCEEEEecC-ccHHHHHHHHHHHHcC--------------CEEEEEeCCHHHHHHHHHcCCCEE-EeCCCccHHHHH
Confidence 468888887764 3444444 444443 5788887665320 1 122111 122222222333
Q ss_pred HHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEE
Q 025715 112 IRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIA 165 (249)
Q Consensus 112 ~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~ 165 (249)
... .++.+|+|+.- .|. ..+..+.+.|+++|+++.
T Consensus 205 ~~~-~~~gvd~vld~-----~g~-------------~~~~~~~~~l~~~G~iv~ 239 (329)
T cd08294 205 KEA-APDGIDCYFDN-----VGG-------------EFSSTVLSHMNDFGRVAV 239 (329)
T ss_pred HHH-CCCCcEEEEEC-----CCH-------------HHHHHHHHhhccCCEEEE
Confidence 332 23579999842 221 134567889999999986
No 493
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=44.64 E-value=1.5e+02 Score=25.97 Aligned_cols=95 Identities=12% Similarity=0.063 Sum_probs=50.1
Q ss_pred cCCCeEEEEcCCCChHHHHHH---HHhcCCCCCCCCCCCCCCCeEEEecCCCCCC--C--CCceEeecCCCChhhHHHHH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLS---RKLYLPAKLSPDSREGDLPLIVAIDLQPMAP--I--EGVIQVQGDITNARTAEVVI 112 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~---~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~--~--~~v~~~~gDi~~~~~~~~i~ 112 (249)
.+|.+||-.|+ |+....+. +..+ ...|++++.++... . -+++.+ -|..+.+....+.
T Consensus 162 ~~g~~vlV~~~--g~vg~~~~~la~~~G-------------~~~v~~~~~~~~~~~~~~~lg~~~~-~~~~~~~~~~~~~ 225 (341)
T PRK05396 162 LVGEDVLITGA--GPIGIMAAAVAKHVG-------------ARHVVITDVNEYRLELARKMGATRA-VNVAKEDLRDVMA 225 (341)
T ss_pred CCCCeEEEECC--CHHHHHHHHHHHHcC-------------CCEEEEEcCCHHHHHHHHHhCCcEE-ecCccccHHHHHH
Confidence 57888888664 56655543 3333 12577776554321 0 122111 1233323333343
Q ss_pred HhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEE
Q 025715 113 RHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKI 167 (249)
Q Consensus 113 ~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~ 167 (249)
+...++.+|+|+.- .|. . ..+..+.+.|+++|+++.--
T Consensus 226 ~~~~~~~~d~v~d~-----~g~----~--------~~~~~~~~~l~~~G~~v~~g 263 (341)
T PRK05396 226 ELGMTEGFDVGLEM-----SGA----P--------SAFRQMLDNMNHGGRIAMLG 263 (341)
T ss_pred HhcCCCCCCEEEEC-----CCC----H--------HHHHHHHHHHhcCCEEEEEe
Confidence 33344679999852 111 1 24556788999999998743
No 494
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=44.56 E-value=2.1e+02 Score=26.08 Aligned_cols=99 Identities=12% Similarity=0.021 Sum_probs=51.1
Q ss_pred ccCCCeEEEEcCCCChHHHH---HHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----CC-C------CceEeecCCC
Q 025715 39 FEGVKRVVDLCAAPGSWSQV---LSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----PI-E------GVIQVQGDIT 103 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~---l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----~~-~------~v~~~~gDi~ 103 (249)
+++|.+||=+|++ |+.... +++.++. ...+|+++|.++.+ .+ . |.....-|..
T Consensus 173 ~~~g~~VlV~G~~-G~vG~~aiq~ak~~G~-----------g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga~~~~i~~~ 240 (410)
T cd08238 173 IKPGGNTAILGGA-GPMGLMAIDYAIHGPI-----------GPSLLVVTDVNDERLARAQRLFPPEAASRGIELLYVNPA 240 (410)
T ss_pred CCCCCEEEEEeCC-CHHHHHHHHHHHhccc-----------CCceEEEEcCCHHHHHHHHHhccccccccCceEEEECCC
Confidence 3678888877632 444443 4444320 01379999987632 11 1 3221111222
Q ss_pred C-hhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEE
Q 025715 104 N-ARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (249)
Q Consensus 104 ~-~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k 166 (249)
+ .+..+.+.+...+..+|+|+-.. |. -..+..+.++++++|.+++.
T Consensus 241 ~~~~~~~~v~~~t~g~g~D~vid~~-----g~------------~~~~~~a~~~l~~~G~~v~~ 287 (410)
T cd08238 241 TIDDLHATLMELTGGQGFDDVFVFV-----PV------------PELVEEADTLLAPDGCLNFF 287 (410)
T ss_pred ccccHHHHHHHHhCCCCCCEEEEcC-----CC------------HHHHHHHHHHhccCCeEEEE
Confidence 1 12223333333445799888531 11 02456778899999987763
No 495
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=44.52 E-value=2.1e+02 Score=25.20 Aligned_cols=97 Identities=19% Similarity=0.126 Sum_probs=52.8
Q ss_pred ccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCC-eEEEecCCCCCC--C--CCceEeecCCCChhhHHHHHH
Q 025715 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLP-LIVAIDLQPMAP--I--EGVIQVQGDITNARTAEVVIR 113 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~-~vvavDi~~~~~--~--~~v~~~~gDi~~~~~~~~i~~ 113 (249)
+++|.+||=.|+ |+....+.+.... .+. .|++++.++.+. . .++..+ -|..+.+..+.+.+
T Consensus 170 ~~~g~~vlI~g~--g~vG~~a~q~a~~-----------~G~~~v~~~~~~~~~~~~~~~~ga~~~-i~~~~~~~~~~l~~ 235 (351)
T cd08233 170 FKPGDTALVLGA--GPIGLLTILALKA-----------AGASKIIVSEPSEARRELAEELGATIV-LDPTEVDVVAEVRK 235 (351)
T ss_pred CCCCCEEEEECC--CHHHHHHHHHHHH-----------cCCCEEEEECCCHHHHHHHHHhCCCEE-ECCCccCHHHHHHH
Confidence 367888888863 6677665443321 124 788887665321 0 122211 12233333344444
Q ss_pred hcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEE
Q 025715 114 HFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (249)
Q Consensus 114 ~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k 166 (249)
...++.+|+|+-.. |. . ..+..+.+.|+++|++++-
T Consensus 236 ~~~~~~~d~vid~~-----g~---~---------~~~~~~~~~l~~~G~~v~~ 271 (351)
T cd08233 236 LTGGGGVDVSFDCA-----GV---Q---------ATLDTAIDALRPRGTAVNV 271 (351)
T ss_pred HhCCCCCCEEEECC-----CC---H---------HHHHHHHHhccCCCEEEEE
Confidence 44445699998532 11 0 2355678899999998863
No 496
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=44.36 E-value=30 Score=33.36 Aligned_cols=61 Identities=18% Similarity=0.142 Sum_probs=41.8
Q ss_pred CCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC----CCCceEeecCCCChhhHHHHHHhcCCCcccEEEe
Q 025715 50 AAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----IEGVIQVQGDITNARTAEVVIRHFDGCKADLVVC 125 (249)
Q Consensus 50 ~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~----~~~v~~~~gDi~~~~~~~~i~~~~~~~~~DlVls 125 (249)
||-|.+.+.+++.+.. .+..++.+|.++.+. -.+...+.||.++++..++ .+-+++|.|+.
T Consensus 423 ~G~G~~G~~la~~L~~-----------~g~~vvvId~d~~~~~~~~~~g~~~i~GD~~~~~~L~~----a~i~~a~~viv 487 (558)
T PRK10669 423 VGYGRVGSLLGEKLLA-----------AGIPLVVIETSRTRVDELRERGIRAVLGNAANEEIMQL----AHLDCARWLLL 487 (558)
T ss_pred ECCChHHHHHHHHHHH-----------CCCCEEEEECCHHHHHHHHHCCCeEEEcCCCCHHHHHh----cCccccCEEEE
Confidence 4566677888887642 235789999887431 2477889999999876543 23357887765
No 497
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=44.23 E-value=1.1e+02 Score=26.98 Aligned_cols=18 Identities=17% Similarity=0.230 Sum_probs=14.7
Q ss_pred HHHHHHHhccCCCEEEEE
Q 025715 149 GLTVVTHVLKEGGKFIAK 166 (249)
Q Consensus 149 ~l~~a~~~Lk~gG~lv~k 166 (249)
.+..+.+.|++||++++-
T Consensus 236 ~~~~~~~~l~~~G~~v~~ 253 (329)
T TIGR02822 236 LVPPALEALDRGGVLAVA 253 (329)
T ss_pred HHHHHHHhhCCCcEEEEE
Confidence 456788999999999874
No 498
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=44.19 E-value=2.3e+02 Score=25.22 Aligned_cols=77 Identities=12% Similarity=0.034 Sum_probs=50.5
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC------CC---CceEeecCCCChhhHHHH
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP------IE---GVIQVQGDITNARTAEVV 111 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~------~~---~v~~~~gDi~~~~~~~~i 111 (249)
.|+.||==|+|.|-=-+.+.+... ..++++-.|++.... +. .++....|+++.+.+.+.
T Consensus 37 ~g~~vLITGgg~GlGr~ialefa~------------rg~~~vl~Din~~~~~etv~~~~~~g~~~~y~cdis~~eei~~~ 104 (300)
T KOG1201|consen 37 SGEIVLITGGGSGLGRLIALEFAK------------RGAKLVLWDINKQGNEETVKEIRKIGEAKAYTCDISDREEIYRL 104 (300)
T ss_pred cCCEEEEeCCCchHHHHHHHHHHH------------hCCeEEEEeccccchHHHHHHHHhcCceeEEEecCCCHHHHHHH
Confidence 478999999888753333333222 235788899987531 12 377889999998766555
Q ss_pred HHhcC--CCcccEEEeCCCC
Q 025715 112 IRHFD--GCKADLVVCDGAP 129 (249)
Q Consensus 112 ~~~~~--~~~~DlVlsD~~~ 129 (249)
.+... -+.+|+++.|.+.
T Consensus 105 a~~Vk~e~G~V~ILVNNAGI 124 (300)
T KOG1201|consen 105 AKKVKKEVGDVDILVNNAGI 124 (300)
T ss_pred HHHHHHhcCCceEEEecccc
Confidence 44332 2579999999753
No 499
>PRK10537 voltage-gated potassium channel; Provisional
Probab=43.74 E-value=1.4e+02 Score=27.67 Aligned_cols=97 Identities=9% Similarity=-0.015 Sum_probs=55.7
Q ss_pred CeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC--CCCCceEeecCCCChhhHHHHHHhcCCCcc
Q 025715 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--PIEGVIQVQGDITNARTAEVVIRHFDGCKA 120 (249)
Q Consensus 43 ~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~--~~~~v~~~~gDi~~~~~~~~i~~~~~~~~~ 120 (249)
.+|+=+|. |..+..+.+.+.. .+..++.+|.+... ..+++.++.||.++.+.+++ ..-++.
T Consensus 241 ~HvII~G~--g~lg~~v~~~L~~-----------~g~~vvVId~d~~~~~~~~g~~vI~GD~td~e~L~~----AgI~~A 303 (393)
T PRK10537 241 DHFIICGH--SPLAINTYLGLRQ-----------RGQAVTVIVPLGLEHRLPDDADLIPGDSSDSAVLKK----AGAARA 303 (393)
T ss_pred CeEEEECC--ChHHHHHHHHHHH-----------CCCCEEEEECchhhhhccCCCcEEEeCCCCHHHHHh----cCcccC
Confidence 45666555 5566666665531 12456667755322 12467789999999876433 233567
Q ss_pred cEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecC
Q 025715 121 DLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRG 170 (249)
Q Consensus 121 DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~ 170 (249)
+.|++-.. .|+.. .....+.+-+.|+...+..+.+.
T Consensus 304 ~aVI~~t~--------dD~~N------l~ivL~ar~l~p~~kIIa~v~~~ 339 (393)
T PRK10537 304 RAILALRD--------NDADN------AFVVLAAKEMSSDVKTVAAVNDS 339 (393)
T ss_pred CEEEEcCC--------ChHHH------HHHHHHHHHhCCCCcEEEEECCH
Confidence 88876321 12211 12334566788888888865543
No 500
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=43.39 E-value=1.9e+02 Score=24.01 Aligned_cols=76 Identities=9% Similarity=0.099 Sum_probs=46.8
Q ss_pred CCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC---CC--CCceEeecCCCChhhHHHHHHhcC
Q 025715 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---PI--EGVIQVQGDITNARTAEVVIRHFD 116 (249)
Q Consensus 42 g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~---~~--~~v~~~~gDi~~~~~~~~i~~~~~ 116 (249)
++++|=.|+ +|+....+++.+.. .+..|+.++..... .+ .++.++..|+++.+....+.+.+.
T Consensus 7 ~k~~lItGa-s~gIG~~~a~~l~~-----------~G~~v~~~~~~~~~~~~~l~~~~~~~~~~Dl~~~~~~~~~~~~~~ 74 (255)
T PRK06463 7 GKVALITGG-TRGIGRAIAEAFLR-----------EGAKVAVLYNSAENEAKELREKGVFTIKCDVGNRDQVKKSKEVVE 74 (255)
T ss_pred CCEEEEeCC-CChHHHHHHHHHHH-----------CCCEEEEEeCCcHHHHHHHHhCCCeEEEecCCCHHHHHHHHHHHH
Confidence 567787776 47777777776642 23566665443221 11 256788999999876555443321
Q ss_pred --CCcccEEEeCCCC
Q 025715 117 --GCKADLVVCDGAP 129 (249)
Q Consensus 117 --~~~~DlVlsD~~~ 129 (249)
-+.+|.|+.+...
T Consensus 75 ~~~~~id~li~~ag~ 89 (255)
T PRK06463 75 KEFGRVDVLVNNAGI 89 (255)
T ss_pred HHcCCCCEEEECCCc
Confidence 1468999988643
Done!