Query 025716
Match_columns 249
No_of_seqs 122 out of 1151
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 08:45:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025716.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025716hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0183 20S proteasome, regula 100.0 5.5E-63 1.2E-67 400.0 22.1 245 1-247 1-248 (249)
2 cd03750 proteasome_alpha_type_ 100.0 3.8E-61 8.3E-66 410.2 29.3 223 4-228 1-226 (227)
3 PTZ00246 proteasome subunit al 100.0 2.9E-60 6.2E-65 410.9 30.7 233 2-235 3-245 (253)
4 KOG0176 20S proteasome, regula 100.0 3.2E-61 6.9E-66 385.4 21.0 228 1-230 5-240 (241)
5 PRK03996 proteasome subunit al 100.0 3.9E-59 8.5E-64 401.2 29.5 228 2-231 8-239 (241)
6 cd03755 proteasome_alpha_type_ 100.0 1.6E-58 3.5E-63 388.9 26.2 206 4-210 1-207 (207)
7 TIGR03633 arc_protsome_A prote 100.0 2.5E-58 5.4E-63 392.2 27.2 220 2-223 1-224 (224)
8 cd03751 proteasome_alpha_type_ 100.0 1.9E-58 4.1E-63 389.5 26.2 207 2-210 2-212 (212)
9 cd03752 proteasome_alpha_type_ 100.0 9.7E-58 2.1E-62 385.8 26.6 208 2-210 1-213 (213)
10 cd03754 proteasome_alpha_type_ 100.0 7E-57 1.5E-61 380.9 26.1 207 3-210 1-215 (215)
11 KOG0181 20S proteasome, regula 100.0 1.2E-57 2.5E-62 364.2 18.6 226 3-231 5-233 (233)
12 cd03749 proteasome_alpha_type_ 100.0 1.9E-56 4.2E-61 377.3 26.4 204 4-211 1-211 (211)
13 cd03756 proteasome_alpha_arche 100.0 2.8E-56 6E-61 376.3 26.7 207 3-211 1-210 (211)
14 COG0638 PRE1 20S proteasome, a 100.0 2.2E-55 4.7E-60 376.1 28.9 229 2-234 1-235 (236)
15 cd01911 proteasome_alpha prote 100.0 2E-55 4.4E-60 370.6 25.4 206 4-210 1-209 (209)
16 KOG0182 20S proteasome, regula 100.0 3.4E-55 7.3E-60 354.1 23.4 233 1-234 6-245 (246)
17 cd03753 proteasome_alpha_type_ 100.0 6.7E-55 1.5E-59 368.4 26.1 205 4-210 1-213 (213)
18 KOG0184 20S proteasome, regula 100.0 1.6E-55 3.4E-60 358.3 21.1 222 3-227 7-234 (254)
19 KOG0178 20S proteasome, regula 100.0 4.3E-55 9.4E-60 353.2 22.5 236 2-238 3-247 (249)
20 KOG0863 20S proteasome, regula 100.0 5.5E-49 1.2E-53 321.7 21.3 226 4-233 6-238 (264)
21 TIGR03691 20S_bact_alpha prote 100.0 1.9E-46 4.2E-51 319.0 25.6 201 20-228 17-228 (228)
22 TIGR03690 20S_bact_beta protea 100.0 2.9E-45 6.2E-50 310.8 25.3 204 29-234 1-217 (219)
23 PTZ00488 Proteasome subunit be 100.0 1.5E-44 3.2E-49 310.9 24.8 201 26-235 35-242 (247)
24 cd03758 proteasome_beta_type_2 100.0 2.9E-44 6.4E-49 299.1 23.7 185 31-219 2-191 (193)
25 cd03760 proteasome_beta_type_4 100.0 2.3E-44 5E-49 300.7 23.1 187 29-219 1-195 (197)
26 cd03759 proteasome_beta_type_3 100.0 1.2E-43 2.5E-48 296.0 23.3 181 29-214 2-188 (195)
27 cd03761 proteasome_beta_type_5 100.0 2.3E-43 5.1E-48 292.6 23.5 182 31-219 1-187 (188)
28 TIGR03634 arc_protsome_B prote 100.0 2.2E-42 4.9E-47 285.8 23.4 179 30-214 1-184 (185)
29 cd03757 proteasome_beta_type_1 100.0 2.8E-42 6E-47 291.2 23.3 185 27-217 5-203 (212)
30 cd03765 proteasome_beta_bacter 100.0 8.3E-42 1.8E-46 291.2 25.3 200 31-233 1-222 (236)
31 cd03764 proteasome_beta_archea 100.0 8.6E-42 1.9E-46 283.1 23.9 183 31-220 1-188 (188)
32 cd03763 proteasome_beta_type_7 100.0 2.6E-41 5.7E-46 280.4 23.3 183 31-221 1-188 (189)
33 cd03762 proteasome_beta_type_6 100.0 4E-41 8.7E-46 279.1 23.5 180 31-217 1-185 (188)
34 PF00227 Proteasome: Proteasom 100.0 4.1E-41 9E-46 278.7 22.7 183 27-210 1-190 (190)
35 cd01912 proteasome_beta protea 100.0 1.5E-40 3.3E-45 275.5 23.5 182 31-218 1-187 (189)
36 cd01906 proteasome_protease_Hs 100.0 1.6E-39 3.5E-44 267.4 23.5 177 31-210 1-182 (182)
37 KOG0177 20S proteasome, regula 100.0 3E-37 6.5E-42 246.1 17.9 187 30-220 1-192 (200)
38 KOG0179 20S proteasome, regula 100.0 9.9E-32 2.1E-36 217.5 18.6 182 28-214 27-224 (235)
39 KOG0175 20S proteasome, regula 100.0 3.1E-32 6.8E-37 226.4 15.3 201 27-234 68-273 (285)
40 KOG0173 20S proteasome, regula 100.0 4E-31 8.7E-36 219.3 16.6 182 26-214 33-219 (271)
41 KOG0174 20S proteasome, regula 100.0 3.1E-31 6.6E-36 212.3 14.5 197 26-228 15-217 (224)
42 KOG0185 20S proteasome, regula 100.0 6.4E-31 1.4E-35 216.1 14.0 212 8-225 13-241 (256)
43 PRK05456 ATP-dependent proteas 100.0 2.8E-29 6E-34 204.5 19.5 163 30-209 1-171 (172)
44 cd01901 Ntn_hydrolase The Ntn 100.0 8E-29 1.7E-33 198.1 21.5 160 31-195 1-163 (164)
45 KOG0180 20S proteasome, regula 100.0 4.2E-28 9E-33 191.0 17.6 182 28-214 6-193 (204)
46 cd01913 protease_HslV Protease 100.0 1.3E-27 2.7E-32 193.7 19.0 161 31-209 1-170 (171)
47 TIGR03692 ATP_dep_HslV ATP-dep 100.0 4.5E-27 9.7E-32 190.5 19.0 162 31-209 1-170 (171)
48 PF10584 Proteasome_A_N: Prote 99.5 5E-15 1.1E-19 79.0 2.4 23 4-26 1-23 (23)
49 COG5405 HslV ATP-dependent pro 99.4 1.6E-12 3.5E-17 102.2 11.6 168 29-211 3-176 (178)
50 COG3484 Predicted proteasome-t 99.4 9.3E-12 2E-16 101.3 13.7 215 30-248 1-242 (255)
51 PF09894 DUF2121: Uncharacteri 95.4 1.1 2.4E-05 37.0 14.0 46 168-213 131-180 (194)
52 COG4079 Uncharacterized protei 81.0 35 0.00077 29.4 14.5 165 30-224 1-193 (293)
53 KOG3361 Iron binding protein i 80.7 2.9 6.2E-05 32.5 4.1 43 147-189 71-114 (157)
54 smart00481 POLIIIAc DNA polyme 54.5 16 0.00034 24.2 3.0 32 9-40 6-38 (67)
55 PF07499 RuvA_C: RuvA, C-termi 47.6 14 0.00031 23.0 1.7 32 162-193 12-45 (47)
56 PF11211 DUF2997: Protein of u 36.5 53 0.0012 20.8 3.0 33 146-178 2-34 (48)
57 COG3193 GlcG Uncharacterized p 36.1 1.1E+02 0.0025 24.0 5.5 37 180-217 6-43 (141)
58 PF04079 DUF387: Putative tran 35.9 1E+02 0.0022 24.7 5.3 57 185-243 27-86 (159)
59 PF03646 FlaG: FlaG protein; 32.7 2E+02 0.0043 21.0 6.8 51 184-234 36-99 (107)
60 PF00178 Ets: Ets-domain; Int 31.9 85 0.0018 22.4 3.8 28 206-233 20-48 (85)
61 COG4245 TerY Uncharacterized p 31.2 1.9E+02 0.0042 24.1 6.2 51 143-217 4-57 (207)
62 smart00413 ETS erythroblast tr 30.9 66 0.0014 23.2 3.1 27 205-231 19-46 (87)
63 cd04513 Glycosylasparaginase G 30.7 2.3E+02 0.0049 24.8 7.0 58 159-216 186-248 (263)
64 PF09702 Cas_Csa5: CRISPR-asso 30.5 2.3E+02 0.005 21.1 7.4 24 211-234 61-88 (105)
65 PRK08452 flagellar protein Fla 28.8 2.7E+02 0.0059 21.4 7.0 33 202-234 81-115 (124)
66 PF06057 VirJ: Bacterial virul 27.6 79 0.0017 26.3 3.5 33 102-138 44-76 (192)
67 PF01242 PTPS: 6-pyruvoyl tetr 26.3 1.8E+02 0.0038 21.8 5.1 46 75-120 43-98 (123)
68 PF02811 PHP: PHP domain; Int 26.1 66 0.0014 25.0 2.8 31 9-39 7-38 (175)
69 PF13778 DUF4174: Domain of un 25.4 1.9E+02 0.004 21.7 5.0 42 191-232 66-109 (118)
70 PRK09732 hypothetical protein; 24.2 2.5E+02 0.0054 21.8 5.6 36 180-216 5-41 (134)
71 PRK07738 flagellar protein Fla 23.7 3.3E+02 0.0072 20.7 7.2 33 202-234 74-108 (117)
72 KOG3806 Predicted transcriptio 23.3 1.5E+02 0.0034 24.2 4.3 26 205-230 86-112 (177)
73 PF03928 DUF336: Domain of unk 23.2 1.5E+02 0.0033 22.5 4.3 35 181-216 2-37 (132)
74 COG1334 FlaG Uncharacterized f 23.0 3.5E+02 0.0076 20.7 6.5 49 185-233 49-110 (120)
75 PRK00912 ribonuclease P protei 22.8 99 0.0021 26.1 3.4 39 1-40 1-39 (237)
76 KOG0330 ATP-dependent RNA heli 22.2 1.6E+02 0.0035 27.5 4.7 123 68-194 100-232 (476)
77 COG1938 Archaeal enzymes of AT 21.5 5.1E+02 0.011 22.4 7.4 69 132-200 112-202 (244)
78 PRK08868 flagellar protein Fla 21.4 4.2E+02 0.009 21.0 7.1 33 202-234 99-133 (144)
79 COG4728 Uncharacterized protei 20.8 1.1E+02 0.0024 22.8 2.7 31 62-92 9-39 (124)
80 cd01396 MeCP2_MBD MeCP2, MBD1, 20.8 1.6E+02 0.0036 20.4 3.6 29 202-231 23-51 (77)
81 PRK06361 hypothetical protein; 20.8 1.1E+02 0.0025 25.0 3.3 31 9-40 3-33 (212)
82 COG0279 GmhA Phosphoheptose is 20.7 1.2E+02 0.0026 24.8 3.1 35 11-45 116-151 (176)
83 KOG0205 Plasma membrane H+-tra 20.0 9.2E+02 0.02 24.4 10.1 96 43-158 329-425 (942)
No 1
>KOG0183 consensus 20S proteasome, regulatory subunit alpha type PSMA7/PRE6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.5e-63 Score=399.95 Aligned_cols=245 Identities=74% Similarity=1.103 Sum_probs=233.4
Q ss_pred CCCCCCCCcccCCCCcchhhhhHHHHHccCCcEEEEEeCCEEEEEEeccCCcccccCCcccceEEecCCEEEEEecChhh
Q 025716 1 MARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKAD 80 (249)
Q Consensus 1 ~~~yd~~~~~fsp~G~l~Qveya~kav~~G~t~igi~~~dgVvla~d~~~~~~l~~~~~~~Ki~~I~~~i~~~~sG~~~D 80 (249)
|++||+.+|+|||||+|||||||++|+.+|+|+||++++|+|||+.++++..+|++.+...||..+++|++|+++|+.+|
T Consensus 1 msrydraltvFSPDGhL~QVEYAqEAvrkGstaVgvrg~~~vvlgvEkkSv~~Lq~~r~~rkI~~ld~hV~mafaGl~aD 80 (249)
T KOG0183|consen 1 MSRYDRALTVFSPDGHLFQVEYAQEAVRKGSTAVGVRGNNCVVLGVEKKSVPKLQDERTVRKISMLDDHVVMAFAGLTAD 80 (249)
T ss_pred CCccccceEEECCCCCEEeeHhHHHHHhcCceEEEeccCceEEEEEeecchhhhhhhhhhhhheeecceeeEEecCCCcc
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHhhhccCCCccceeEEEEEeeeCCCCCceEEEECCCCceeccce
Q 025716 81 ARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKA 160 (249)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~t~~~~~rP~gv~~ivaG~d~~~~gp~Ly~iDp~G~~~~~~~ 160 (249)
++.+++++|.+|+.|+++.+.+++++.++++++.+.|.|||.++.||||++++|+|+|+ ++.|.||++||+|.+.+|++
T Consensus 81 ArilinrArvecqShrlt~edpvtveyitRyiA~~kQrYTqs~grRPFGvs~Li~GfD~-~g~p~lyqtePsG~f~ewka 159 (249)
T KOG0183|consen 81 ARILINRARVECQSHRLTLEDPVTVEYITRYIAGLKQRYTQSNGRRPFGVSTLIGGFDP-DGTPRLYQTEPSGIFSEWKA 159 (249)
T ss_pred ceeehhhHhHhhhhhhcccCCCcHHHHHHHHHHHhhhhhhccCCcccccceEEEEeeCC-CCCeeeEeeCCCcchhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999998 78899999999999999999
Q ss_pred EeecCCchHHHHHHHhhhccC--Cc-HHHHHHHHHHHHHHHhcCCCcEEEEEEEcCCCEEEcCHHHHHHHHHHHHHHHHH
Q 025716 161 NATGRNSNSMREFLEKNYKET--SG-QETIKLAIRALLEVVESGGKNIEVAVMTREKGLKQLDEAEIDAMVAEIEAKKAA 237 (249)
Q Consensus 161 ~aiG~g~~~a~~~Le~~~~~~--~s-eeai~la~~~l~~~~~~~~~~iei~~v~~~g~~~~~~~~ei~~~l~~i~~~~~~ 237 (249)
.|+|.++..++.+|||+|.+. .+ .+++++++++|.++.++++.++|++++++++.+++++.++|+.++..|+.+ .+
T Consensus 160 ~aiGr~sk~VrEflEK~y~e~~~~~~~~~ikL~ir~LleVvqs~~~nie~aVm~~~~~~~~l~~~~I~~~v~~ie~E-~e 238 (249)
T KOG0183|consen 160 NAIGRSSKTVREFLEKNYKEEAIATEGETIKLAIRALLEVVQSGGKNIEVAVMKRRKDLKMLESEEIDDIVKEIEQE-EE 238 (249)
T ss_pred cccccccHHHHHHHHHhcccccccccccHHHHHHHHHHHHhhcCCCeeEEEEEecCCceeecCHHHHHHHHHHHHHH-HH
Confidence 999999999999999999876 56 899999999999999999999999999998779999999999999999988 55
Q ss_pred HHHhhcCCCC
Q 025716 238 AEAAKKGPPK 247 (249)
Q Consensus 238 ~~~~~~~~~~ 247 (249)
+++.++..++
T Consensus 239 ~e~~~~~~~~ 248 (249)
T KOG0183|consen 239 AEAEKKKKKK 248 (249)
T ss_pred HHHHhhcccC
Confidence 5555555443
No 2
>cd03750 proteasome_alpha_type_2 proteasome_alpha_type_2. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=3.8e-61 Score=410.20 Aligned_cols=223 Identities=43% Similarity=0.708 Sum_probs=214.9
Q ss_pred CCCCCcccCCCCcchhhhhHHHHHccCCcEEEEEeCCEEEEEEeccCCcccccCCcccceEEecCCEEEEEecChhhHHH
Q 025716 4 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARV 83 (249)
Q Consensus 4 yd~~~~~fsp~G~l~Qveya~kav~~G~t~igi~~~dgVvla~d~~~~~~l~~~~~~~Ki~~I~~~i~~~~sG~~~D~~~ 83 (249)
||+.+|+|||||||+|||||++|+++|+|+|||+++||||||+|++.+++++.+++.+||++|++|++|+++|+.+|++.
T Consensus 1 yd~~~t~fsp~Grl~QveyA~~av~~G~t~igik~~dgVvlaad~~~~~~l~~~~~~~KI~~I~~~i~~~~sG~~~D~~~ 80 (227)
T cd03750 1 YSFSLTTFSPSGKLVQIEYALAAVSSGAPSVGIKAANGVVLATEKKVPSPLIDESSVHKVEQITPHIGMVYSGMGPDFRV 80 (227)
T ss_pred CCCCCceECCCCeEhHHHHHHHHHHcCCCEEEEEeCCEEEEEEeecCCccccCCCCcceEEEEcCCEEEEEeEcHHhHHH
Confidence 89999999999999999999999999999999999999999999999888888889999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHhhhccCCCccceeEEEEEeeeCCCCCceEEEECCCCceeccceEee
Q 025716 84 LINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANAT 163 (249)
Q Consensus 84 l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~t~~~~~rP~gv~~ivaG~d~~~~gp~Ly~iDp~G~~~~~~~~ai 163 (249)
+++++|.++..|++++|++++++.+++++++++|.|+++++.|||+|++||+|||+ .||+||.+||+|++.+++++|+
T Consensus 81 l~~~~r~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~rP~~v~~li~G~D~--~g~~Ly~~d~~G~~~~~~~~a~ 158 (227)
T cd03750 81 LVKKARKIAQQYYLVYGEPIPVSQLVREIASVMQEYTQSGGVRPFGVSLLIAGWDE--GGPYLYQVDPSGSYFTWKATAI 158 (227)
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCCCCCChheEEEEEEEeC--CCCEEEEECCCCCEEeeeEEEE
Confidence 99999999999999999999999999999999999999999999999999999994 6999999999999999999999
Q ss_pred cCCchHHHHHHHhhhccCCc-HHHHHHHHHHHHHHHhc--CCCcEEEEEEEcCCCEEEcCHHHHHHHH
Q 025716 164 GRNSNSMREFLEKNYKETSG-QETIKLAIRALLEVVES--GGKNIEVAVMTREKGLKQLDEAEIDAMV 228 (249)
Q Consensus 164 G~g~~~a~~~Le~~~~~~~s-eeai~la~~~l~~~~~~--~~~~iei~~v~~~g~~~~~~~~ei~~~l 228 (249)
|+|+..++++||++|+++|+ +||++++++||..++.+ ++.++||++|++++.++.++++||++++
T Consensus 159 G~g~~~~~~~Le~~~~~~ms~eeai~l~~~~l~~~~~~~l~~~~iev~iv~~~~~~~~~~~~ei~~~~ 226 (227)
T cd03750 159 GKNYSNAKTFLEKRYNEDLELEDAIHTAILTLKEGFEGQMTEKNIEIGICGETKGFRLLTPAEIKDYL 226 (227)
T ss_pred CCCCHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhcccCCCCcEEEEEEECCCCEEECCHHHHHHHh
Confidence 99999999999999999999 99999999999988864 6789999999997559999999999886
No 3
>PTZ00246 proteasome subunit alpha; Provisional
Probab=100.00 E-value=2.9e-60 Score=410.89 Aligned_cols=233 Identities=39% Similarity=0.648 Sum_probs=220.5
Q ss_pred CCCCCCCcccCCCCcchhhhhHHHHHccCCcEEEEEeCCEEEEEEeccCCcccccC-CcccceEEecCCEEEEEecChhh
Q 025716 2 ARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDS-RSVRKIVSLDNHIALACAGLKAD 80 (249)
Q Consensus 2 ~~yd~~~~~fsp~G~l~Qveya~kav~~G~t~igi~~~dgVvla~d~~~~~~l~~~-~~~~Ki~~I~~~i~~~~sG~~~D 80 (249)
.+||+++|+|||||||+|||||+||+++|+|+|||+++||||||+|++.+++++.. ++.+||++|++|++++++|+.+|
T Consensus 3 ~~yd~~~~~fsp~Grl~QvEYA~~av~~g~t~Igik~~dgVvlaad~r~s~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D 82 (253)
T PTZ00246 3 RRYDSRTTTFSPEGRLYQVEYALEAINNASLTVGILCKEGVILGADKPISSKLLDPGKINEKIYKIDSHIFCAVAGLTAD 82 (253)
T ss_pred CccCCCCceECCCCEEhHHHHHHHHHHhCCCEEEEEECCEEEEEEecCCCCcCccCCCCcccEEEecCCEEEEEEEcHHH
Confidence 46999999999999999999999999999999999999999999999998876554 46899999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHhhhccCCCccceeEEEEEeeeCCCCCceEEEECCCCceeccce
Q 025716 81 ARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKA 160 (249)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~t~~~~~rP~gv~~ivaG~d~~~~gp~Ly~iDp~G~~~~~~~ 160 (249)
++.+.+.+|.++..|++.++.+++++.++++++..+|.|+|+++.|||+|++||+|||+ ++||+||.+||+|++.++++
T Consensus 83 ~~~l~~~~r~~~~~~~~~~~~~~~v~~l~~~l~~~~q~~~~~~~~rP~~v~~li~G~D~-~~gp~Ly~~D~~Gs~~~~~~ 161 (253)
T PTZ00246 83 ANILINQCRLYAQRYRYTYGEPQPVEQLVVQICDLKQSYTQFGGLRPFGVSFLFAGYDE-NLGYQLYHTDPSGNYSGWKA 161 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccccCcccCCEEEEEEEEeC-CCCcEEEEECCCCCEecceE
Confidence 99999999999999999999999999999999999999999999999999999999996 67999999999999999999
Q ss_pred EeecCCchHHHHHHHhhhccCCc-HHHHHHHHHHHHHHHhc---CCCcEEEEEEEcCC-----CEEEcCHHHHHHHHHHH
Q 025716 161 NATGRNSNSMREFLEKNYKETSG-QETIKLAIRALLEVVES---GGKNIEVAVMTREK-----GLKQLDEAEIDAMVAEI 231 (249)
Q Consensus 161 ~aiG~g~~~a~~~Le~~~~~~~s-eeai~la~~~l~~~~~~---~~~~iei~~v~~~g-----~~~~~~~~ei~~~l~~i 231 (249)
+|+|+++..++++|++.|+++|+ +||++++++||..+..+ ++++++|++|+++| .|++++++||++++.++
T Consensus 162 ~a~G~gs~~~~~~Le~~~~~~ms~eeai~l~~~al~~~~~~d~~s~~~vev~ii~~~~~~~~~~~~~l~~~ei~~~l~~~ 241 (253)
T PTZ00246 162 TAIGQNNQTAQSILKQEWKEDLTLEQGLLLAAKVLTKSMDSTSPKADKIEVGILSHGETDGEPIQKMLSEKEIAELLKKV 241 (253)
T ss_pred EEECCCcHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEecCCcCCCCCeEECCHHHHHHHHHHH
Confidence 99999999999999999999999 99999999999999874 46899999999864 38999999999999999
Q ss_pred HHHH
Q 025716 232 EAKK 235 (249)
Q Consensus 232 ~~~~ 235 (249)
+++.
T Consensus 242 ~~~~ 245 (253)
T PTZ00246 242 TQEY 245 (253)
T ss_pred hhhh
Confidence 7655
No 4
>KOG0176 consensus 20S proteasome, regulatory subunit alpha type PSMA5/PUP2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.2e-61 Score=385.39 Aligned_cols=228 Identities=40% Similarity=0.693 Sum_probs=217.2
Q ss_pred CCCCCCCCcccCCCCcchhhhhHHHHHccCCcEEEEEeCCEEEEEEeccCCcccccCCcccceEEecCCEEEEEecChhh
Q 025716 1 MARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKAD 80 (249)
Q Consensus 1 ~~~yd~~~~~fsp~G~l~Qveya~kav~~G~t~igi~~~dgVvla~d~~~~~~l~~~~~~~Ki~~I~~~i~~~~sG~~~D 80 (249)
++.||+.+++|||||||||||||.+|++.|+|.|||+.++||||+.++|++++|+.+...+||++|++||+|++||+.+|
T Consensus 5 rseydrgVNTfSpEGRlfQVEYaieAikLGsTaIGv~TkEgVvL~vEKritSpLm~p~sveKi~eid~HIgca~SGl~aD 84 (241)
T KOG0176|consen 5 RSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGVKTKEGVVLAVEKRITSPLMEPSSVEKIVEIDDHIGCAMSGLIAD 84 (241)
T ss_pred HHHhcccccccCCCceeeehhhHHHHHhcCCceeeeeccceEEEEEeccccCcccCchhhhhheehhhceeeeccccccc
Confidence 35699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHhhhccCC-----CccceeEEEEEeeeCCCCCceEEEECCCCce
Q 025716 81 ARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGG-----VRPFGLSTLIVGFDPYTGVPSLYQTDPSGTF 155 (249)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~t~~~~-----~rP~gv~~ivaG~d~~~~gp~Ly~iDp~G~~ 155 (249)
++.+++++|.+|++|++.||++++++.+.+.++++.-+|..... .|||||++|+||+| .+||+||..||+|++
T Consensus 85 arTlve~arv~~qnh~f~Y~e~i~VEs~tq~v~~LaLrFGe~~~~~~~msRPFGValliAG~D--~~gpqL~h~dPSGtf 162 (241)
T KOG0176|consen 85 ARTLVERARVETQNHWFTYGEPISVESLTQAVSDLALRFGEGDDEEAIMSRPFGVALLIAGHD--ETGPQLYHLDPSGTF 162 (241)
T ss_pred hHHHHHHHHHHhhhceeecCCcccHHHHHHHHHHHHhHhCCCcchhhhhcCCcceEEEEeecc--CCCceEEEeCCCCce
Confidence 99999999999999999999999999999999999877764422 49999999999999 589999999999999
Q ss_pred eccceEeecCCchHHHHHHHhhhccCCc-HHHHHHHHHHHHHHHhc--CCCcEEEEEEEcCCCEEEcCHHHHHHHHHH
Q 025716 156 SAWKANATGRNSNSMREFLEKNYKETSG-QETIKLAIRALLEVVES--GGKNIEVAVMTREKGLKQLDEAEIDAMVAE 230 (249)
Q Consensus 156 ~~~~~~aiG~g~~~a~~~Le~~~~~~~s-eeai~la~~~l~~~~~~--~~~~iei~~v~~~g~~~~~~~~ei~~~l~~ 230 (249)
++|++.|||+|+..|.+.|++.|+++|+ +|++.+++..|+.+++. +.+|+||..|++.|.|++++++|+++++..
T Consensus 163 ~~~~AKAIGSgsEga~~~L~~e~~~~ltL~ea~~~~L~iLkqVMeeKl~~~Nvev~~vt~e~~f~~~t~EE~~~~i~~ 240 (241)
T KOG0176|consen 163 IRYKAKAIGSGSEGAESSLQEEYHKDLTLKEAEKIVLKILKQVMEEKLNSNNVEVAVVTPEGEFHIYTPEEVEQVIKR 240 (241)
T ss_pred EEecceeccccchHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHhcCccceEEEEEcccCceEecCHHHHHHHHhc
Confidence 9999999999999999999999999999 99999999999999975 788999999999988999999999998864
No 5
>PRK03996 proteasome subunit alpha; Provisional
Probab=100.00 E-value=3.9e-59 Score=401.16 Aligned_cols=228 Identities=49% Similarity=0.801 Sum_probs=218.4
Q ss_pred CCCCCCCcccCCCCcchhhhhHHHHHccCCcEEEEEeCCEEEEEEeccCCcccccCCcccceEEecCCEEEEEecChhhH
Q 025716 2 ARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADA 81 (249)
Q Consensus 2 ~~yd~~~~~fsp~G~l~Qveya~kav~~G~t~igi~~~dgVvla~d~~~~~~l~~~~~~~Ki~~I~~~i~~~~sG~~~D~ 81 (249)
++||+++|+|||||||+|||||+||+++|+|+|||+++||||||+|++.++.+..+++.+||+.|++|++++++|+.+|+
T Consensus 8 ~~y~~~~~~fsp~Gr~~Q~eya~~av~~G~t~igik~~dgVvlaad~r~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~ 87 (241)
T PRK03996 8 MGYDRAITIFSPDGRLYQVEYAREAVKRGTTAVGVKTKDGVVLAVDKRITSPLIEPSSIEKIFKIDDHIGAASAGLVADA 87 (241)
T ss_pred cccCCCCceECCCCeEhHHHHHHHHHHhCCCEEEEEeCCEEEEEEeccCCCcccCCCccceEEEEcCCEEEEEcccHHHH
Confidence 47999999999999999999999999999999999999999999999998877777889999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHhhhccCCCccceeEEEEEeeeCCCCCceEEEECCCCceeccceE
Q 025716 82 RVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKAN 161 (249)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~t~~~~~rP~gv~~ivaG~d~~~~gp~Ly~iDp~G~~~~~~~~ 161 (249)
+.++++++.++..|+++++++++++.+++++++.+|.|++.++.|||+|++|||||| ++||+||.+||+|++.+++++
T Consensus 88 ~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~rP~~~~~ilaG~d--~~gp~Ly~id~~G~~~~~~~~ 165 (241)
T PRK03996 88 RVLIDRARVEAQINRLTYGEPIGVETLTKKICDHKQQYTQHGGVRPFGVALLIAGVD--DGGPRLFETDPSGAYLEYKAT 165 (241)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCccchheEEEEEEEe--CCcCEEEEECCCCCeecceEE
Confidence 999999999999999999999999999999999999999999999999999999999 468999999999999999999
Q ss_pred eecCCchHHHHHHHhhhccCCc-HHHHHHHHHHHHHHHhc--CCCcEEEEEEEcCC-CEEEcCHHHHHHHHHHH
Q 025716 162 ATGRNSNSMREFLEKNYKETSG-QETIKLAIRALLEVVES--GGKNIEVAVMTREK-GLKQLDEAEIDAMVAEI 231 (249)
Q Consensus 162 aiG~g~~~a~~~Le~~~~~~~s-eeai~la~~~l~~~~~~--~~~~iei~~v~~~g-~~~~~~~~ei~~~l~~i 231 (249)
|+|.++..++++||+.|+++|+ +||++++++||..+.+. ++++++|++++++| .++.++++|++++++++
T Consensus 166 a~G~g~~~~~~~Le~~~~~~~s~eeai~l~~~al~~~~~~~~~~~~i~i~ii~~~~~~~~~~~~~ei~~~~~~~ 239 (241)
T PRK03996 166 AIGAGRDTVMEFLEKNYKEDLSLEEAIELALKALAKANEGKLDPENVEIAYIDVETKKFRKLSVEEIEKYLEKL 239 (241)
T ss_pred EECCCcHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHhccCCCCCcEEEEEEECCCCcEEECCHHHHHHHHHHh
Confidence 9999999999999999999999 99999999999999864 57789999999976 49999999999999876
No 6
>cd03755 proteasome_alpha_type_7 proteasome_alpha_type_7. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.6e-58 Score=388.90 Aligned_cols=206 Identities=82% Similarity=1.231 Sum_probs=199.8
Q ss_pred CCCCCcccCCCCcchhhhhHHHHHccCCcEEEEEeCCEEEEEEeccCCcccccCCcccceEEecCCEEEEEecChhhHHH
Q 025716 4 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARV 83 (249)
Q Consensus 4 yd~~~~~fsp~G~l~Qveya~kav~~G~t~igi~~~dgVvla~d~~~~~~l~~~~~~~Ki~~I~~~i~~~~sG~~~D~~~ 83 (249)
||+++|+|||||||+|||||++|+++|+|+|||+++||||||+|++.+..++.++..+||+.|++|++|++||+.+|++.
T Consensus 1 ~d~~~~~fsp~Gr~~Qveya~~av~~G~t~Igik~~dgVvlaad~~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~ 80 (207)
T cd03755 1 YDRAITVFSPDGHLFQVEYAQEAVRKGTTAVGVRGKDCVVLGVEKKSVAKLQDPRTVRKICMLDDHVCLAFAGLTADARV 80 (207)
T ss_pred CCCCCceECCCCeEeHHHHHHHHHHcCCCEEEEEeCCEEEEEEecCCCCcccCCCccCcEEEECCCEEEEEecchhhHHH
Confidence 89999999999999999999999999999999999999999999998877777778999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHhhhccCCCccceeEEEEEeeeCCCCCceEEEECCCCceeccceEee
Q 025716 84 LINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANAT 163 (249)
Q Consensus 84 l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~t~~~~~rP~gv~~ivaG~d~~~~gp~Ly~iDp~G~~~~~~~~ai 163 (249)
+.+++|.++..|+++++++++++.++++++.++|.|+++++.|||+|++||+|||+ +++|+||.+||+|++.+++++|+
T Consensus 81 l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~~~~y~~~~~~rP~~vs~ii~G~D~-~~~p~Ly~iD~~G~~~~~~~~a~ 159 (207)
T cd03755 81 LINRARLECQSHRLTVEDPVTVEYITRYIAGLQQRYTQSGGVRPFGISTLIVGFDP-DGTPRLYQTDPSGTYSAWKANAI 159 (207)
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcccCcccceeEEEEEEEeC-CCCeEEEEECCCcCEEcceEEEE
Confidence 99999999999999999999999999999999999999999999999999999997 67999999999999999999999
Q ss_pred cCCchHHHHHHHhhhccCCc-HHHHHHHHHHHHHHHhcCCCcEEEEEE
Q 025716 164 GRNSNSMREFLEKNYKETSG-QETIKLAIRALLEVVESGGKNIEVAVM 210 (249)
Q Consensus 164 G~g~~~a~~~Le~~~~~~~s-eeai~la~~~l~~~~~~~~~~iei~~v 210 (249)
|+++..++++||++|+++|+ +||++++++||.++.+.++.++||+++
T Consensus 160 G~gs~~~~~~Le~~~~~~ms~eeai~l~~~~l~~~~~~~~~~~e~~~~ 207 (207)
T cd03755 160 GRNSKTVREFLEKNYKEEMTRDDTIKLAIKALLEVVQSGSKNIELAVM 207 (207)
T ss_pred CCCCHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEEC
Confidence 99999999999999999999 999999999999999988889999975
No 7
>TIGR03633 arc_protsome_A proteasome endopeptidase complex, archaeal, alpha subunit. This protein family describes the archaeal proteasome alpha subunit, homologous to both the beta subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=100.00 E-value=2.5e-58 Score=392.18 Aligned_cols=220 Identities=51% Similarity=0.825 Sum_probs=209.9
Q ss_pred CCCCCCCcccCCCCcchhhhhHHHHHccCCcEEEEEeCCEEEEEEeccCCcccccCCcccceEEecCCEEEEEecChhhH
Q 025716 2 ARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADA 81 (249)
Q Consensus 2 ~~yd~~~~~fsp~G~l~Qveya~kav~~G~t~igi~~~dgVvla~d~~~~~~l~~~~~~~Ki~~I~~~i~~~~sG~~~D~ 81 (249)
|+||.++|+|||||||+|||||++|+++|+|+|||+++||||||+|++.++.++.+++.+||+.|++|++|++||+.+|+
T Consensus 1 ~~~~~~~~~f~p~Grl~Qieya~~av~~G~tvigi~~~dgvvlaad~r~~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~ 80 (224)
T TIGR03633 1 MGYDRAITVFSPDGRLYQVEYAREAVKRGTTAVGIKTKDGVVLAVDKRITSKLVEPSSIEKIFKIDDHIGAATSGLVADA 80 (224)
T ss_pred CCCCCCCceECCCCeEeHHHHHHHHHHcCCCEEEEEECCEEEEEEeccCCccccCCCccceEEEECCCEEEEEeecHHhH
Confidence 79999999999999999999999999999999999999999999999998877777889999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHhhhccCCCccceeEEEEEeeeCCCCCceEEEECCCCceeccceE
Q 025716 82 RVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKAN 161 (249)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~t~~~~~rP~gv~~ivaG~d~~~~gp~Ly~iDp~G~~~~~~~~ 161 (249)
+.+.+.++.++..|+++++++++++.+++++++.+|.|++.++.|||+|++||+|+| +++|+||.+||.|++.+++++
T Consensus 81 ~~l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~l~~~~~~~~~rP~~v~~ll~G~d--~~~~~Ly~~D~~G~~~~~~~~ 158 (224)
T TIGR03633 81 RVLIDRARIEAQINRLTYGEPIDVETLAKKICDLKQQYTQHGGVRPFGVALLIAGVD--DGGPRLFETDPSGALLEYKAT 158 (224)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCCCccccceEEEEEEEe--CCcCEEEEECCCCCeecceEE
Confidence 999999999999999999999999999999999999999999999999999999999 579999999999999999999
Q ss_pred eecCCchHHHHHHHhhhccCCc-HHHHHHHHHHHHHHHhc--CCCcEEEEEEEcCCC-EEEcCHHH
Q 025716 162 ATGRNSNSMREFLEKNYKETSG-QETIKLAIRALLEVVES--GGKNIEVAVMTREKG-LKQLDEAE 223 (249)
Q Consensus 162 aiG~g~~~a~~~Le~~~~~~~s-eeai~la~~~l~~~~~~--~~~~iei~~v~~~g~-~~~~~~~e 223 (249)
++|+++..++++|++.|+++|+ +||++++++||..+.+. ++++++|++|+++|. |+.++++|
T Consensus 159 a~G~g~~~~~~~L~~~~~~~~~~eeai~l~~~al~~~~~d~~~~~~i~i~ii~~~g~~~~~~~~~~ 224 (224)
T TIGR03633 159 AIGAGRQAVTEFLEKEYREDLSLDEAIELALKALYSAVEDKLTPENVEVAYITVEDKKFRKLSVEE 224 (224)
T ss_pred EECCCCHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhcccCCCCcEEEEEEEcCCCcEEECCCCC
Confidence 9999999999999999999999 99999999999998863 577899999999764 88887764
No 8
>cd03751 proteasome_alpha_type_3 proteasome_alpha_type_3. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.9e-58 Score=389.54 Aligned_cols=207 Identities=36% Similarity=0.546 Sum_probs=198.8
Q ss_pred CCCCCCCcccCCCCcchhhhhHHHHHccCCcEEEEEeCCEEEEEEeccCCcccccCCcccceEEecCCEEEEEecChhhH
Q 025716 2 ARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADA 81 (249)
Q Consensus 2 ~~yd~~~~~fsp~G~l~Qveya~kav~~G~t~igi~~~dgVvla~d~~~~~~l~~~~~~~Ki~~I~~~i~~~~sG~~~D~ 81 (249)
.+||+.+|+|||||||+|||||++|+++|+|+|||+++||||||+|++.++.+..+++.+||+.|++|++++++|+.+|+
T Consensus 2 ~~yd~~~t~fsp~Grl~Qveya~~a~~~G~tvIgik~kdgVvla~d~r~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~ 81 (212)
T cd03751 2 TGYDLSASTFSPDGRVFQVEYANKAVENSGTAIGIRCKDGVVLAVEKLVTSKLYEPGSNKRIFNVDRHIGIAVAGLLADG 81 (212)
T ss_pred CCccCCCceECCCCcchHHHHHHHHHhcCCCEEEEEeCCEEEEEEEccccccccCcchhcceeEecCcEEEEEEEChHhH
Confidence 57999999999999999999999999999999999999999999999998877777789999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHhhhccCCCccceeEEEEEeeeCCCCCceEEEECCCCceeccceE
Q 025716 82 RVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKAN 161 (249)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~t~~~~~rP~gv~~ivaG~d~~~~gp~Ly~iDp~G~~~~~~~~ 161 (249)
+.+.+++|.++..|+++++++++++.++++|++++|.|+++++.|||+|++||+||| ++||+||.+||+|++.+++++
T Consensus 82 ~~l~~~~r~~~~~y~~~~~~~~~v~~la~~ls~~~~~~t~~~~~rP~~vs~li~G~D--~~gp~Ly~~D~~Gs~~~~~~~ 159 (212)
T cd03751 82 RHLVSRAREEAENYRDNYGTPIPVKVLADRVAMYMHAYTLYSSVRPFGCSVLLGGYD--SDGPQLYMIEPSGVSYGYFGC 159 (212)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccCCCcCCceEEEEEEEEe--CCcCEEEEECCCCCEEeeEEE
Confidence 999999999999999999999999999999999999999999999999999999999 468999999999999999999
Q ss_pred eecCCchHHHHHHHhhhccCCc-HHHHHHHHHHHHHHHh---cCCCcEEEEEE
Q 025716 162 ATGRNSNSMREFLEKNYKETSG-QETIKLAIRALLEVVE---SGGKNIEVAVM 210 (249)
Q Consensus 162 aiG~g~~~a~~~Le~~~~~~~s-eeai~la~~~l~~~~~---~~~~~iei~~v 210 (249)
|+|+++..++++||++|+++|| +||+++++++|..+++ .+..++||+++
T Consensus 160 a~G~g~~~a~~~Lek~~~~dms~eeai~l~~~~L~~~~~~~~~~~~~iei~~~ 212 (212)
T cd03751 160 AIGKGKQAAKTELEKLKFSELTCREAVKEAAKIIYIVHDEIKDKAFELELSWV 212 (212)
T ss_pred EECCCCHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhhccCCCCccEEEEEC
Confidence 9999999999999999999999 9999999999999998 35778999875
No 9
>cd03752 proteasome_alpha_type_4 proteasome_alpha_type_4. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=9.7e-58 Score=385.75 Aligned_cols=208 Identities=42% Similarity=0.715 Sum_probs=198.7
Q ss_pred CCCCCCCcccCCCCcchhhhhHHHHHccCCcEEEEEeCCEEEEEEeccCCccccc-CCcccceEEecCCEEEEEecChhh
Q 025716 2 ARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQD-SRSVRKIVSLDNHIALACAGLKAD 80 (249)
Q Consensus 2 ~~yd~~~~~fsp~G~l~Qveya~kav~~G~t~igi~~~dgVvla~d~~~~~~l~~-~~~~~Ki~~I~~~i~~~~sG~~~D 80 (249)
.+||+.+|+|||||||+|||||+||+++|+|+|||+++||||||+|++.+++++. .++.+||++|++|++|++||+.+|
T Consensus 1 ~~yd~~~~~fsp~Grl~Qveya~~a~~~G~t~igi~~~dgVvla~d~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D 80 (213)
T cd03752 1 RRYDSRTTIFSPEGRLYQVEYAMEAISHAGTCLGILAKDGIVLAAEKKVTSKLLDQSFSSEKIYKIDDHIACAVAGITSD 80 (213)
T ss_pred CCcCCCCceECCCCEEhHHHhHHHHHhcCCCEEEEEeCCEEEEEEEeccCCcccCCCcCcceEEEecCCEEEEEecChHh
Confidence 4799999999999999999999999999999999999999999999999887655 458999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHhhhccCCCccceeEEEEEeeeCCCCCceEEEECCCCceeccce
Q 025716 81 ARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKA 160 (249)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~t~~~~~rP~gv~~ivaG~d~~~~gp~Ly~iDp~G~~~~~~~ 160 (249)
++.+++++|.++..|+++++++++++.++++++..+|.|+++++.|||+|++||+|||+ +.||+||.+||+|++.++++
T Consensus 81 ~~~l~~~~r~~~~~~~~~~~~~i~v~~la~~ls~~~~~~t~~~~~RP~~v~~li~G~D~-~~g~~ly~~d~~G~~~~~~~ 159 (213)
T cd03752 81 ANILINYARLIAQRYLYSYQEPIPVEQLVQRLCDIKQGYTQYGGLRPFGVSFLYAGWDK-HYGFQLYQSDPSGNYSGWKA 159 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcCCCcccceeEEEEEEEeC-CCCCEEEEECCCCCeeeeeE
Confidence 99999999999999999999999999999999999999999999999999999999996 67999999999999999999
Q ss_pred EeecCCchHHHHHHHhhhccCCc-HHHHHHHHHHHHHHHhc---CCCcEEEEEE
Q 025716 161 NATGRNSNSMREFLEKNYKETSG-QETIKLAIRALLEVVES---GGKNIEVAVM 210 (249)
Q Consensus 161 ~aiG~g~~~a~~~Le~~~~~~~s-eeai~la~~~l~~~~~~---~~~~iei~~v 210 (249)
+|+|+++..++++||++|+++|+ +||++++++||..+.++ .+.++||++|
T Consensus 160 ~a~G~gs~~~~~~Le~~y~~~ms~eea~~l~~~al~~~~~r~~~~~~~~ei~~~ 213 (213)
T cd03752 160 TAIGNNNQAAQSLLKQDYKDDMTLEEALALAVKVLSKTMDSTKLTSEKLEFATL 213 (213)
T ss_pred EEECCCcHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEC
Confidence 99999999999999999999999 99999999999999874 4678999875
No 10
>cd03754 proteasome_alpha_type_6 proteasome_alpha_type_6. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=7e-57 Score=380.92 Aligned_cols=207 Identities=38% Similarity=0.631 Sum_probs=196.9
Q ss_pred CCCCCCcccCCCCcchhhhhHHHHHcc-CCcEEEEEeCCEEEEEEeccCCcccccCCcccceEEecCCEEEEEecChhhH
Q 025716 3 RYDRAITVFSPDGHLFQVEYALEAVRK-GNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADA 81 (249)
Q Consensus 3 ~yd~~~~~fsp~G~l~Qveya~kav~~-G~t~igi~~~dgVvla~d~~~~~~l~~~~~~~Ki~~I~~~i~~~~sG~~~D~ 81 (249)
+||+++|+|||||||+|||||+||+++ |+|+|||+++||||||+|++.+..++..++.+||++|++|++|++||+.+|+
T Consensus 1 ~yd~~~~~fsp~Grl~Qveya~~a~~~~g~t~igi~~~d~Vvlaad~r~~~~~i~~~~~~Ki~~I~~~i~~~~sG~~~D~ 80 (215)
T cd03754 1 GFDRHITIFSPEGRLYQVEYAFKAVKNAGLTSVAVRGKDCAVVVTQKKVPDKLIDPSTVTHLFRITDEIGCVMTGMIADS 80 (215)
T ss_pred CCCCCCeeECCCCeEeHHHhHHHHHhcCCccEEEEEeCCEEEEEEeccccccccCCcccCceEEEcCCEEEEEEechhhH
Confidence 699999999999999999999999975 8899999999999999999998877666688999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHhhhccCCCccceeEEEEEeeeCCCCCceEEEECCCCceeccceE
Q 025716 82 RVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKAN 161 (249)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~t~~~~~rP~gv~~ivaG~d~~~~gp~Ly~iDp~G~~~~~~~~ 161 (249)
+.+.+++|.++..|+++++++++++.+|+++++++|.|+++++.|||+|++||+|||+ ++||+||.+||+|++.+++++
T Consensus 81 ~~l~~~~r~~~~~~~~~~~~~i~v~~la~~ls~~~q~yt~~~~~RP~~v~~ii~G~D~-~~gp~Ly~~Dp~Gs~~~~~~~ 159 (215)
T cd03754 81 RSQVQRARYEAAEFKYKYGYEMPVDVLAKRIADINQVYTQHAYMRPLGVSMILIGIDE-ELGPQLYKCDPAGYFAGYKAT 159 (215)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhCCCCCcCCeeEEEEEEEeC-CCCeEEEEEcCCccEEeEEEE
Confidence 9999999999999999999999999999999999999999999999999999999996 679999999999999999999
Q ss_pred eecCCchHHHHHHHhhhccC--C--c-HHHHHHHHHHHHHHHhc--CCCcEEEEEE
Q 025716 162 ATGRNSNSMREFLEKNYKET--S--G-QETIKLAIRALLEVVES--GGKNIEVAVM 210 (249)
Q Consensus 162 aiG~g~~~a~~~Le~~~~~~--~--s-eeai~la~~~l~~~~~~--~~~~iei~~v 210 (249)
|+|+++..++++||++|+++ | + +|+++++++||.++.++ .++++||+||
T Consensus 160 a~G~gs~~~~~~Le~~~~~~~~~~~s~eeai~l~~~al~~~~~rd~~~~~~ei~~~ 215 (215)
T cd03754 160 AAGVKEQEATNFLEKKLKKKPDLIESYEETVELAISCLQTVLSTDFKATEIEVGVV 215 (215)
T ss_pred EECCCcHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHHHhcccCCCCcEEEEEC
Confidence 99999999999999999985 7 9 99999999999999875 5778999885
No 11
>KOG0181 consensus 20S proteasome, regulatory subunit alpha type PSMA2/PRE8 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-57 Score=364.15 Aligned_cols=226 Identities=41% Similarity=0.682 Sum_probs=219.2
Q ss_pred CCCCCCcccCCCCcchhhhhHHHHHccCCcEEEEEeCCEEEEEEeccCCcccccCCcccceEEecCCEEEEEecChhhHH
Q 025716 3 RYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADAR 82 (249)
Q Consensus 3 ~yd~~~~~fsp~G~l~Qveya~kav~~G~t~igi~~~dgVvla~d~~~~~~l~~~~~~~Ki~~I~~~i~~~~sG~~~D~~ 82 (249)
+|..++|+|||+|+|.|+|||+.|+.+|.+.|||+-.||||||++++..+.|++....+|++.|.+||+|.+||..+|++
T Consensus 5 ~y~fslTtFSpsGKL~QieyAL~Av~~G~~SvGi~A~nGvVlatekk~~s~L~~~~sv~KV~~i~~~IG~vYSGmgpD~R 84 (233)
T KOG0181|consen 5 GYSFSLTTFSPSGKLVQIEYALTAVVNGQTSVGIKAANGVVLATEKKDVSPLVDEESVRKVEKITPHIGCVYSGMGPDYR 84 (233)
T ss_pred ccceeeEEEcCCCceehHHHHHHHHhCCCCceeeeecCceEEEeccCCCCccchhhhhhhHhhccCCcceEEecCCCcee
Confidence 68999999999999999999999999999999999999999999999999999888999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHhhhccCCCccceeEEEEEeeeCCCCCceEEEECCCCceeccceEe
Q 025716 83 VLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANA 162 (249)
Q Consensus 83 ~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~t~~~~~rP~gv~~ivaG~d~~~~gp~Ly~iDp~G~~~~~~~~a 162 (249)
.+++..|..|++|...|++++++..|+..++..+|+|||+++.||||+++++|||| +++|.||++||+|++..|+++|
T Consensus 85 vlV~~~rkiAe~Yy~vY~e~~pt~qlv~~~asvmQEyTqsgGvrPFGvslliaG~~--~~~p~LyQvdPSGsyf~wkatA 162 (233)
T KOG0181|consen 85 VLVHKSRKIAEQYYRVYGEPIPTTQLVQEVASVMQEYTQSGGVRPFGVSLLIAGWD--EGGPLLYQVDPSGSYFAWKATA 162 (233)
T ss_pred ehhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCCccccceEEEEeecC--CCceeEEEECCccceeehhhhh
Confidence 99999999999999999999999999999999999999999999999999999999 5799999999999999999999
Q ss_pred ecCCchHHHHHHHhhhccCCc-HHHHHHHHHHHHHHHhc--CCCcEEEEEEEcCCCEEEcCHHHHHHHHHHH
Q 025716 163 TGRNSNSMREFLEKNYKETSG-QETIKLAIRALLEVVES--GGKNIEVAVMTREKGLKQLDEAEIDAMVAEI 231 (249)
Q Consensus 163 iG~g~~~a~~~Le~~~~~~~s-eeai~la~~~l~~~~~~--~~~~iei~~v~~~g~~~~~~~~ei~~~l~~i 231 (249)
+|.+...++++|||+|+++|. ++++..|+..|++.++- ..+++||+++..++ |+++++.||+++|+.|
T Consensus 163 ~Gkn~v~aktFlEkR~~edleldd~ihtailtlkE~fege~~~~nieigv~~~~~-F~~lt~~eI~d~l~~l 233 (233)
T KOG0181|consen 163 MGKNYVNAKTFLEKRYNEDLELDDAIHTAILTLKESFEGEMTAKNIEIGVCGENG-FRRLTPAEIEDYLASL 233 (233)
T ss_pred hccCcchHHHHHHHHhccccccchHHHHHHHHHHHHhccccccCceEEEEecCCc-eeecCHHHHHHHHhcC
Confidence 999999999999999999999 99999999999999964 68899999999887 9999999999999764
No 12
>cd03749 proteasome_alpha_type_1 proteasome_alpha_type_1. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.9e-56 Score=377.27 Aligned_cols=204 Identities=42% Similarity=0.666 Sum_probs=194.1
Q ss_pred CCCCCcccCCCCcchhhhhHHHHHccCCcEEEEEeCCEEEEEEeccCCcccccCCcccceEEecCCEEEEEecChhhHHH
Q 025716 4 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARV 83 (249)
Q Consensus 4 yd~~~~~fsp~G~l~Qveya~kav~~G~t~igi~~~dgVvla~d~~~~~~l~~~~~~~Ki~~I~~~i~~~~sG~~~D~~~ 83 (249)
||+++|+|||||||+|||||++|+++|+|+|||+++||||||+|++.++.+. ++.+||++|++|++|++||+.+|++.
T Consensus 1 yd~~~t~fsp~Grl~Qveya~~av~~G~t~IgIk~~dgVvlaad~r~~~~l~--~~~~KI~~I~~~i~~~~sG~~~D~~~ 78 (211)
T cd03749 1 YDTDVTTWSPQGRLFQVEYAMEAVKQGSATVGLKSKTHAVLVALKRATSELS--SYQKKIFKVDDHIGIAIAGLTADARV 78 (211)
T ss_pred CCCCCceECCCCeEeHHHHHHHHHhcCCCEEEEEeCCEEEEEEeccCccccC--CccccEEEeCCCEEEEEEeChHhHHH
Confidence 8999999999999999999999999999999999999999999999877753 35799999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHhhhccCCCccceeEEEEEeeeCCCCCceEEEECCCCceeccceEee
Q 025716 84 LINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANAT 163 (249)
Q Consensus 84 l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~t~~~~~rP~gv~~ivaG~d~~~~gp~Ly~iDp~G~~~~~~~~ai 163 (249)
+.+++|.++..|+++++++++++.++++++..+|.|+++.+.|||+|++||+|||+ .||+||.+||+|++.+++++|+
T Consensus 79 l~~~~r~~~~~~~~~~~~~~~v~~la~~is~~~~~~t~~~~~rP~~v~~ii~G~D~--~gp~Ly~~Dp~G~~~~~~~~a~ 156 (211)
T cd03749 79 LSRYMRQECLNYRFVYDSPIPVSRLVSKVAEKAQINTQRYGRRPYGVGLLIAGYDE--SGPHLFQTCPSGNYFEYKATSI 156 (211)
T ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCCCCceEEEEEEEEcC--CCCeEEEECCCcCEeeeeEEEE
Confidence 99999999999999999999999999999999999999999999999999999994 6899999999999999999999
Q ss_pred cCCchHHHHHHHhhhc--cCCc-HHHHHHHHHHHHHHHh----cCCCcEEEEEEE
Q 025716 164 GRNSNSMREFLEKNYK--ETSG-QETIKLAIRALLEVVE----SGGKNIEVAVMT 211 (249)
Q Consensus 164 G~g~~~a~~~Le~~~~--~~~s-eeai~la~~~l~~~~~----~~~~~iei~~v~ 211 (249)
|+++..++++||++|+ ++|+ +|++++++++|+.++. .++.+|||++|+
T Consensus 157 G~g~~~a~~~Le~~~~~~~~ms~ee~i~~~~~~l~~~~~~~~~~~~~~iei~ii~ 211 (211)
T cd03749 157 GARSQSARTYLERHFEEFEDCSLEELIKHALRALRETLPGEQELTIKNVSIAIVG 211 (211)
T ss_pred CCCcHHHHHHHHHhhccccCCCHHHHHHHHHHHHHHHhccCCCCCCCcEEEEEEC
Confidence 9999999999999999 5999 9999999999999986 356899999973
No 13
>cd03756 proteasome_alpha_archeal proteasome_alpha_archeal. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.8e-56 Score=376.34 Aligned_cols=207 Identities=51% Similarity=0.861 Sum_probs=199.6
Q ss_pred CCCCCCcccCCCCcchhhhhHHHHHccCCcEEEEEeCCEEEEEEeccCCcccccCCcccceEEecCCEEEEEecChhhHH
Q 025716 3 RYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADAR 82 (249)
Q Consensus 3 ~yd~~~~~fsp~G~l~Qveya~kav~~G~t~igi~~~dgVvla~d~~~~~~l~~~~~~~Ki~~I~~~i~~~~sG~~~D~~ 82 (249)
+||.++|+|||||||+|+|||.||+++|+|+|||+++||||||+|++.++.++.+++.+||+.|++|++|++||+.+|++
T Consensus 1 ~y~~~~~~fsp~G~l~Q~eya~~av~~G~t~igik~~dgvvla~d~~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~ 80 (211)
T cd03756 1 GYDRAITVFSPDGRLYQVEYAREAVKRGTTALGIKCKEGVVLAVDKRITSKLVEPESIEKIYKIDDHVGAATSGLVADAR 80 (211)
T ss_pred CCCCCCceECCCCeEhHHHHHHHHHHcCCCEEEEEECCEEEEEEeccCCCcccCCCccceEEEEcCCEEEEEecCHHHHH
Confidence 69999999999999999999999999999999999999999999999987777778999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHhhhccCCCccceeEEEEEeeeCCCCCceEEEECCCCceeccceEe
Q 025716 83 VLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANA 162 (249)
Q Consensus 83 ~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~t~~~~~rP~gv~~ivaG~d~~~~gp~Ly~iDp~G~~~~~~~~a 162 (249)
.+.+.++.+++.|+++++++++++.++++++..+|.|++.++.|||+|++||+||| +++|+||.+||+|++.++++++
T Consensus 81 ~l~~~l~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~~~~~~~rP~~v~~ll~G~D--~~~~~ly~vd~~G~~~~~~~~a 158 (211)
T cd03756 81 VLIDRARVEAQIHRLTYGEPIDVEVLVKKICDLKQQYTQHGGVRPFGVALLIAGVD--DGGPRLFETDPSGAYNEYKATA 158 (211)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCCCeechhEEEEEEEEe--CCCCEEEEECCCCCeeeeEEEE
Confidence 99999999999999999999999999999999999999999999999999999999 4799999999999999999999
Q ss_pred ecCCchHHHHHHHhhhccCCc-HHHHHHHHHHHHHHHhc--CCCcEEEEEEE
Q 025716 163 TGRNSNSMREFLEKNYKETSG-QETIKLAIRALLEVVES--GGKNIEVAVMT 211 (249)
Q Consensus 163 iG~g~~~a~~~Le~~~~~~~s-eeai~la~~~l~~~~~~--~~~~iei~~v~ 211 (249)
+|+++..++++||++|+++|+ +||++++++||..+.+. .+.+++|++|+
T Consensus 159 ~G~g~~~~~~~Le~~~~~~m~~~ea~~l~~~~l~~~~~~~~~~~~~~v~ii~ 210 (211)
T cd03756 159 IGSGRQAVTEFLEKEYKEDMSLEEAIELALKALYAALEENETPENVEIAYVT 210 (211)
T ss_pred ECCCCHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhcccCCCCcEEEEEEe
Confidence 999999999999999999999 99999999999998864 57899999986
No 14
>COG0638 PRE1 20S proteasome, alpha and beta subunits [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-55 Score=376.07 Aligned_cols=229 Identities=48% Similarity=0.805 Sum_probs=215.3
Q ss_pred CCCCCCCcccCCCCcchhhhhHHHHHccC-CcEEEEEeCCEEEEEEeccCCccc-ccCCcccceEEecCCEEEEEecChh
Q 025716 2 ARYDRAITVFSPDGHLFQVEYALEAVRKG-NAAVGVRGTDTIVLGVEKKSTVKL-QDSRSVRKIVSLDNHIALACAGLKA 79 (249)
Q Consensus 2 ~~yd~~~~~fsp~G~l~Qveya~kav~~G-~t~igi~~~dgVvla~d~~~~~~l-~~~~~~~Ki~~I~~~i~~~~sG~~~ 79 (249)
++||+.+++|||+|+++|+|||.+++.+| +|+|||+++||||||+|+|.++++ +..++.+|||+|+|||+|++||+.+
T Consensus 1 ~~~~~~~~~fsp~g~l~q~e~a~~a~~~~gtT~vgik~~dgVVlaadkr~t~~~~~~~~~~~Ki~~I~d~i~~~~sG~~a 80 (236)
T COG0638 1 AGYDRAITIFSPEGRLFQVEYALEAVKRGGTTTVGIKGKDGVVLAADKRATSGLLIASSNVEKIFKIDDHIGMAIAGLAA 80 (236)
T ss_pred CCCcCcceeECCCCchHHHHHHHHHHHcCCceEEEEEecCEEEEEEeccCCCCceecccccceEEEecCCEEEEeccCcH
Confidence 47999999999999999999999999875 999999999999999999999964 5556799999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHhhhccCCCccceeEEEEEeeeCCCCCceEEEECCCCceeccc
Q 025716 80 DARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWK 159 (249)
Q Consensus 80 D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~t~~~~~rP~gv~~ivaG~d~~~~gp~Ly~iDp~G~~~~~~ 159 (249)
|++.|++++|.+|+.|++++|++++++.+++++++++|.|+++ .|||+|++||||+|+ ++|+||.+||+|++.+++
T Consensus 81 Da~~lv~~~r~~a~~~~~~~~~~i~v~~la~~ls~~l~~~~~~--~rP~gv~~iiaG~d~--~~p~Ly~~Dp~G~~~~~~ 156 (236)
T COG0638 81 DAQVLVRYARAEAQLYRLRYGEPISVEALAKLLSNILQEYTQS--GRPYGVSLLVAGVDD--GGPRLYSTDPSGSYNEYK 156 (236)
T ss_pred hHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccC--cccceEEEEEEEEcC--CCCeEEEECCCCceeecC
Confidence 9999999999999999999999999999999999999999987 899999999999994 789999999999999999
Q ss_pred eEeecCCchHHHHHHHhhhccCCc-HHHHHHHHHHHHHHHhc---CCCcEEEEEEEcCCCEEEcCHHHHHHHHHHHHHH
Q 025716 160 ANATGRNSNSMREFLEKNYKETSG-QETIKLAIRALLEVVES---GGKNIEVAVMTREKGLKQLDEAEIDAMVAEIEAK 234 (249)
Q Consensus 160 ~~aiG~g~~~a~~~Le~~~~~~~s-eeai~la~~~l~~~~~~---~~~~iei~~v~~~g~~~~~~~~ei~~~l~~i~~~ 234 (249)
++|+|+|++.++++||+.|+++|+ |||++++++||.++.++ .+++++|++++++..++.++++++..++..+..+
T Consensus 157 ~~a~Gsgs~~a~~~Le~~y~~~m~~eeai~la~~al~~a~~rd~~s~~~~~v~vi~~~~~~~~~~~~~~~~~~~~~~~~ 235 (236)
T COG0638 157 ATAIGSGSQFAYGFLEKEYREDLSLEEAIELAVKALRAAIERDAASGGGIEVAVITKDEGFRKLDGEEIKKLLDDLSEK 235 (236)
T ss_pred EEEEcCCcHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccccCCCCeEEEEEEcCCCeEEcCHHHHHHHHHHHhhc
Confidence 999999999999999999999999 99999999999999985 3567899999995449999999999999887653
No 15
>cd01911 proteasome_alpha proteasome alpha subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 different alpha and 10 different beta proteasome subunit genes while archaea have one of each.
Probab=100.00 E-value=2e-55 Score=370.57 Aligned_cols=206 Identities=59% Similarity=0.909 Sum_probs=197.7
Q ss_pred CCCCCcccCCCCcchhhhhHHHHHccCCcEEEEEeCCEEEEEEeccCCcccccCCcccceEEecCCEEEEEecChhhHHH
Q 025716 4 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARV 83 (249)
Q Consensus 4 yd~~~~~fsp~G~l~Qveya~kav~~G~t~igi~~~dgVvla~d~~~~~~l~~~~~~~Ki~~I~~~i~~~~sG~~~D~~~ 83 (249)
||+++|+|||||||+|+|||++++++|+|+|||+++||||+|+|++.+..++..++.+||++|++|++++++|+.+|++.
T Consensus 1 ~~~~~~~f~~~G~~~q~eya~~~~~~G~tvigi~~~dgVvlaaD~~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~ 80 (209)
T cd01911 1 YDRSITTFSPEGRLFQVEYALEAVKNGSTAVGIKGKDGVVLAVEKKVTSKLLDPSSVEKIFKIDDHIGCAVAGLTADARV 80 (209)
T ss_pred CCCCCccCCCCCEEeHHHHHHHHHHcCCCEEEEEECCEEEEEEEecCCccccCCcccceEEEecCCeEEEeccCcHhHHH
Confidence 89999999999999999999999999999999999999999999999887766688999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHhhhccCCCccceeEEEEEeeeCCCCCceEEEECCCCceeccceEee
Q 025716 84 LINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANAT 163 (249)
Q Consensus 84 l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~t~~~~~rP~gv~~ivaG~d~~~~gp~Ly~iDp~G~~~~~~~~ai 163 (249)
+.+.++.++..|++++|++++++.+++++++++|.|+++++.|||+|++||+|||+ +++|+||.+||.|++.+++++++
T Consensus 81 l~~~l~~~~~~~~~~~g~~~~~~~la~~ls~~~~~~~~~~~~rP~~v~~iv~G~d~-~~~~~Ly~iD~~G~~~~~~~~a~ 159 (209)
T cd01911 81 LVNRARVEAQNYRYTYGEPIPVEVLVKRIADLAQVYTQYGGVRPFGVSLLIAGYDE-EGGPQLYQTDPSGTYFGYKATAI 159 (209)
T ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCccChhheEEEEEEcC-CCCcEEEEECCCCCeeeeeEEEe
Confidence 99999999999999999999999999999999999999999999999999999997 66999999999999999999999
Q ss_pred cCCchHHHHHHHhhhccCCc-HHHHHHHHHHHHHHHhc--CCCcEEEEEE
Q 025716 164 GRNSNSMREFLEKNYKETSG-QETIKLAIRALLEVVES--GGKNIEVAVM 210 (249)
Q Consensus 164 G~g~~~a~~~Le~~~~~~~s-eeai~la~~~l~~~~~~--~~~~iei~~v 210 (249)
|+++..++++|++.|+++|+ +||++++++||..+..+ .+++++|+++
T Consensus 160 G~g~~~~~~~L~~~~~~~ms~~ea~~l~~~~l~~~~~~d~~~~~~~i~i~ 209 (209)
T cd01911 160 GKGSQEAKTFLEKRYKKDLTLEEAIKLALKALKEVLEEDKKAKNIEIAVV 209 (209)
T ss_pred CCCcHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHhccCCCCcEEEEEC
Confidence 99999999999999999999 99999999999999875 5678898874
No 16
>KOG0182 consensus 20S proteasome, regulatory subunit alpha type PSMA6/SCL1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.4e-55 Score=354.13 Aligned_cols=233 Identities=36% Similarity=0.581 Sum_probs=223.2
Q ss_pred CCCCCCCCcccCCCCcchhhhhHHHHHcc-CCcEEEEEeCCEEEEEEeccCCcccccCCcccceEEecCCEEEEEecChh
Q 025716 1 MARYDRAITVFSPDGHLFQVEYALEAVRK-GNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKA 79 (249)
Q Consensus 1 ~~~yd~~~~~fsp~G~l~Qveya~kav~~-G~t~igi~~~dgVvla~d~~~~~~l~~~~~~~Ki~~I~~~i~~~~sG~~~ 79 (249)
+.+||+-+|+|||||||+|||||+||+++ |-|.||++++|++|+++.++..++|+++.....+|+|.++|+|+++|..+
T Consensus 6 ~agfDrhitIFspeGrLyQVEYafkAin~~gltsVavrgkDcavvvsqKkvpDKLld~~tvt~~f~itk~ig~v~tG~~a 85 (246)
T KOG0182|consen 6 SAGFDRHITIFSPEGRLYQVEYAFKAINQAGLTSVAVRGKDCAVVVTQKKVPDKLLDSSTVTHLFRITKKIGCVITGMIA 85 (246)
T ss_pred cCCccceEEEECCCceEEeeehHHHHhhcCCCceEEEcCCceEEEEecccCcccccccccceeEEEeeccceEEEecCCc
Confidence 56899999999999999999999999988 78999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHhhhccCCCccceeEEEEEeeeCCCCCceEEEECCCCceeccc
Q 025716 80 DARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWK 159 (249)
Q Consensus 80 D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~t~~~~~rP~gv~~ivaG~d~~~~gp~Ly~iDp~G~~~~~~ 159 (249)
|++..++++|.+|.++++.||++||++.||++++++.|.|||...+||+||.+++.|+|+ +.||.+|.+||.|-+..++
T Consensus 86 Dar~~v~rar~eAa~~~yk~Gyemp~DiL~k~~Ad~~QvytQ~a~mRplg~~~~~i~~D~-E~gP~vYk~DpAGyy~g~k 164 (246)
T KOG0182|consen 86 DARSQVQRARYEAAEFRYKYGYEMPCDILAKRMADKSQVYTQNAAMRPLGVAATLIGVDE-ERGPSVYKTDPAGYYYGFK 164 (246)
T ss_pred chHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHhhHHHHHhhhhhhcccceeEEEEEecc-ccCcceEeecCccccccce
Confidence 999999999999999999999999999999999999999999999999999999999998 7899999999999999999
Q ss_pred eEeecCCchHHHHHHHhhhccC--Cc-HHHHHHHHHHHHHHHhc--CCCcEEEEEEEcC-CCEEEcCHHHHHHHHHHHHH
Q 025716 160 ANATGRNSNSMREFLEKNYKET--SG-QETIKLAIRALLEVVES--GGKNIEVAVMTRE-KGLKQLDEAEIDAMVAEIEA 233 (249)
Q Consensus 160 ~~aiG~g~~~a~~~Le~~~~~~--~s-eeai~la~~~l~~~~~~--~~~~iei~~v~~~-g~~~~~~~~ei~~~l~~i~~ 233 (249)
+++.|.....+.++|||+|+++ ++ +|++++++.||..++.. ....+||++++++ +.|++|+.+||++.|..|++
T Consensus 165 AtaaG~Kq~e~tsfLEKk~Kk~~~~t~~e~ve~ai~al~~sl~~Dfk~se~EVgvv~~~~p~f~~Ls~~eie~hL~~IAE 244 (246)
T KOG0182|consen 165 ATAAGVKQQEATSFLEKKYKKDIDLTFEETVETAISALQSSLGIDFKSSELEVGVVTVDNPEFRILSAEEIEEHLQAIAE 244 (246)
T ss_pred eeecccchhhHHHHHHHhhccCccchHHHHHHHHHHHHHHHHhcccCCcceEEEEEEcCCcceeeccHHHHHHHHHHhhh
Confidence 9999999999999999999987 67 99999999999999864 4678999999985 45999999999999999987
Q ss_pred H
Q 025716 234 K 234 (249)
Q Consensus 234 ~ 234 (249)
.
T Consensus 245 k 245 (246)
T KOG0182|consen 245 K 245 (246)
T ss_pred c
Confidence 5
No 17
>cd03753 proteasome_alpha_type_5 proteasome_alpha_type_5. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=6.7e-55 Score=368.42 Aligned_cols=205 Identities=43% Similarity=0.735 Sum_probs=194.4
Q ss_pred CCCCCcccCCCCcchhhhhHHHHHccCCcEEEEEeCCEEEEEEeccCCcccccCCcccceEEecCCEEEEEecChhhHHH
Q 025716 4 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARV 83 (249)
Q Consensus 4 yd~~~~~fsp~G~l~Qveya~kav~~G~t~igi~~~dgVvla~d~~~~~~l~~~~~~~Ki~~I~~~i~~~~sG~~~D~~~ 83 (249)
||+++|+|||||||+|||||++|+++|+|+|||+++||||||+|++.++.+...++.+||+.|++|++|+++|+.+|++.
T Consensus 1 ~~~~~~~f~p~G~~~Q~eya~~a~~~G~t~igik~~dgVvlaad~r~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~ 80 (213)
T cd03753 1 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGIKTKEGVVLAVEKRITSPLMEPSSVEKIMEIDDHIGCAMSGLIADART 80 (213)
T ss_pred CCCCCccCCCCCeEhHHHHHHHHHhcCCCEEEEEeCCEEEEEEecccCCcCcCCCccceEEEEcCCEEEEEecCHHHHHH
Confidence 89999999999999999999999999999999999999999999999887777778999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHhhhccC-----CCccceeEEEEEeeeCCCCCceEEEECCCCceecc
Q 025716 84 LINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSG-----GVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAW 158 (249)
Q Consensus 84 l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~t~~~-----~~rP~gv~~ivaG~d~~~~gp~Ly~iDp~G~~~~~ 158 (249)
+.+.+|.+++.|++++|++++++.++++++.++|.|++.. +.|||+|++||+||| ++||+||.+||+|++.++
T Consensus 81 l~~~~r~~~~~~~~~~~~~i~~~~~~~~ls~~~~~~~~~~~~~~~~~rP~~v~~ii~G~D--~~gp~Ly~vd~~G~~~~~ 158 (213)
T cd03753 81 LIDHARVEAQNHRFTYNEPMTVESVTQAVSDLALQFGEGDDGKKAMSRPFGVALLIAGVD--ENGPQLFHTDPSGTFTRC 158 (213)
T ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhCcccccccccccceEEEEEEEEc--CCCCEEEEECCCCCeecc
Confidence 9999999999999999999999999999999999998743 469999999999999 478999999999999999
Q ss_pred ceEeecCCchHHHHHHHhhhccCCc-HHHHHHHHHHHHHHHhc--CCCcEEEEEE
Q 025716 159 KANATGRNSNSMREFLEKNYKETSG-QETIKLAIRALLEVVES--GGKNIEVAVM 210 (249)
Q Consensus 159 ~~~aiG~g~~~a~~~Le~~~~~~~s-eeai~la~~~l~~~~~~--~~~~iei~~v 210 (249)
+++++|++++.++++|+++|+++|+ +||++++++||+.+.+. ++.++||+++
T Consensus 159 ~~~a~G~~~~~~~~~L~~~~~~~ls~eeai~l~~~~l~~~~~~~~~~~~~ei~~~ 213 (213)
T cd03753 159 DAKAIGSGSEGAQSSLQEKYHKDMTLEEAEKLALSILKQVMEEKLNSTNVELATV 213 (213)
T ss_pred cEEEECCCcHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhcccCCCCcEEEEEC
Confidence 9999999999999999999999999 99999999999998764 5778999875
No 18
>KOG0184 consensus 20S proteasome, regulatory subunit alpha type PSMA3/PRE10 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-55 Score=358.33 Aligned_cols=222 Identities=34% Similarity=0.508 Sum_probs=208.5
Q ss_pred CCCCCCcccCCCCcchhhhhHHHHHccCCcEEEEEeCCEEEEEEeccCCcccccCCcccceEEecCCEEEEEecChhhHH
Q 025716 3 RYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADAR 82 (249)
Q Consensus 3 ~yd~~~~~fsp~G~l~Qveya~kav~~G~t~igi~~~dgVvla~d~~~~~~l~~~~~~~Ki~~I~~~i~~~~sG~~~D~~ 82 (249)
|||++.++||||||+||+|||+||+.+|+|+|||||+|||||++|+..+++|..+....||+.|++||+|+++|+.+|.+
T Consensus 7 GyDls~s~fSpdGrvfQveYA~KAven~~T~IGIk~kdGVVl~vEKli~SkLy~p~sn~ri~~V~r~iG~avaGl~~Dg~ 86 (254)
T KOG0184|consen 7 GYDLSASTFSPDGRVFQVEYAQKAVENSGTCIGIKCKDGVVLAVEKLITSKLYEPGSNERIFSVDRHIGMAVAGLIPDGR 86 (254)
T ss_pred cccccceeeCCCCceehHHHHHHHHhcCCcEEEEecCCeEEEEEeeeecccccccCCCCceEeecccccEEEeccccchH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHhhhccCCCccceeEEEEEeeeCCCCCceEEEECCCCceeccceEe
Q 025716 83 VLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANA 162 (249)
Q Consensus 83 ~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~t~~~~~rP~gv~~ivaG~d~~~~gp~Ly~iDp~G~~~~~~~~a 162 (249)
.++.++|.++.+|+.+|+.++|...++.++++++|.||.++..|||||+.|+++|| ++||+||.++|+|..+.|+++|
T Consensus 87 ~l~~~ar~ea~~~~~~y~~piP~~~la~rva~yvh~~Tly~~vRpfG~~~~~~~yd--~~g~~LymiepSG~~~~Y~~aa 164 (254)
T KOG0184|consen 87 HLVNRARDEAASWRKNYGDPIPGKHLADRVADYVHAFTLYSSVRPFGASTILGSYD--DEGPQLYMIEPSGSSYGYKGAA 164 (254)
T ss_pred HHHHHHHHHHHHHHHhcCCCCchHHHHHHHHhhhheeehhhccccccceEEEEEEe--CCCceEEEEcCCCCccceeeee
Confidence 99999999999999999999999999999999999999999999999999999999 6899999999999999999999
Q ss_pred ecCCchHHHHHHHhhhccCCc-HHHHHHHHHHHHHHHhc---CCCcEEEEEEEc--CCCEEEcCHHHHHHH
Q 025716 163 TGRNSNSMREFLEKNYKETSG-QETIKLAIRALLEVVES---GGKNIEVAVMTR--EKGLKQLDEAEIDAM 227 (249)
Q Consensus 163 iG~g~~~a~~~Le~~~~~~~s-eeai~la~~~l~~~~~~---~~~~iei~~v~~--~g~~~~~~~~ei~~~ 227 (249)
+|.+.+.|++.|||.--.+|+ +|+++.+.+.|..+.+. ....+|+.|+.. +|..+.++. ||-+.
T Consensus 165 iGKgrq~aKtElEKL~~~~mt~~e~VkeaakIiY~~HDe~KdK~feiEm~wvg~eTnG~h~~vp~-el~~e 234 (254)
T KOG0184|consen 165 IGKGRQAAKTELEKLKIDEMTCKELVKEAAKIIYKVHDENKDKEFEIEMGWVGEETNGLHEKVPS-ELLEE 234 (254)
T ss_pred ccchhHHHHHHHHhcccccccHHHHHHHHHheeEeecccccCcceEEEEEEEEeecCCccccCcH-HHHHH
Confidence 999999999999999888999 99999999999999875 345789999986 564555555 55443
No 19
>KOG0178 consensus 20S proteasome, regulatory subunit alpha type PSMA4/PRE9 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.3e-55 Score=353.23 Aligned_cols=236 Identities=38% Similarity=0.630 Sum_probs=221.3
Q ss_pred CCCCCCCcccCCCCcchhhhhHHHHHccCCcEEEEEeCCEEEEEEeccCCccccc-CCcccceEEecCCEEEEEecChhh
Q 025716 2 ARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQD-SRSVRKIVSLDNHIALACAGLKAD 80 (249)
Q Consensus 2 ~~yd~~~~~fsp~G~l~Qveya~kav~~G~t~igi~~~dgVvla~d~~~~~~l~~-~~~~~Ki~~I~~~i~~~~sG~~~D 80 (249)
.+||.--|+|||||||+|||||++++.+.+|+|||.++|||||+++++.+++|+. +...+||+.|+|||+|+++|+.+|
T Consensus 3 r~ydsrttiFspEGRLyQVEyAmeais~aGt~iGila~DGvvLa~e~k~t~kll~t~~~~EKiY~l~d~iaC~vaGlt~D 82 (249)
T KOG0178|consen 3 RRYDSRTTIFSPEGRLYQVEYAMEAISHAGTCIGILASDGVVLAGENKVTSKLLDTSIPMEKIYKLNDNIACAVAGLTSD 82 (249)
T ss_pred cCcCCcccccCCCcchHHHHHHHHHHhhhcceeEEEecCceEEEeecccchhhhhccccHHHhhhcCCceEEEEeccccc
Confidence 3589999999999999999999999999999999999999999999999998755 468999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHhhhccCCCccceeEEEEEeeeCCCCCceEEEECCCCceeccce
Q 025716 81 ARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKA 160 (249)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~t~~~~~rP~gv~~ivaG~d~~~~gp~Ly~iDp~G~~~~~~~ 160 (249)
+..|++++|..+++|.++||+++|++.|++.++++.|.|||++|.||||||+|.+|||. ..|.|||+.||+|++..|++
T Consensus 83 AnvL~n~aRi~AQ~yl~~y~e~iP~eqLv~~lcdiKQayTQygG~RPFGVSfLYaGwd~-~~gyqLy~SdPSGny~gWka 161 (249)
T KOG0178|consen 83 ANVLKNYARIIAQRYLFRYGEEIPCEQLVTFLCDIKQAYTQYGGKRPFGVSFLYAGWDD-RYGYQLYQSDPSGNYGGWKA 161 (249)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHhhccCcCCCceeeeeeceec-CcceEEEecCCCCCccccce
Confidence 99999999999999999999999999999999999999999999999999999999997 78899999999999999999
Q ss_pred EeecCCchHHHHHHHhhhccCCc--HHHHHHHHHHHHHHHhc---CCCcEEEEEEEcCC---CEEEcCHHHHHHHHHHHH
Q 025716 161 NATGRNSNSMREFLEKNYKETSG--QETIKLAIRALLEVVES---GGKNIEVAVMTREK---GLKQLDEAEIDAMVAEIE 232 (249)
Q Consensus 161 ~aiG~g~~~a~~~Le~~~~~~~s--eeai~la~~~l~~~~~~---~~~~iei~~v~~~g---~~~~~~~~ei~~~l~~i~ 232 (249)
.++|.++..++..|.+.|+++.. +||..+|++.|...++. +...+|++.++++. .++.++++||.++++++.
T Consensus 162 ~ciG~N~~Aa~s~Lkqdykdd~~~~~eA~~laikvL~kt~d~~~lt~eklEia~~~k~~~k~v~~i~~~~ev~kll~k~~ 241 (249)
T KOG0178|consen 162 TCIGANSGAAQSMLKQDYKDDENDLEEAKALAIKVLSKTLDSGSLTAEKLEIATITKDCNKTVLKILKKDEVLKLLEKYH 241 (249)
T ss_pred eeeccchHHHHHHHHhhhccccccHHHHHHHHHHHHHhhcccCCCChhheEEEEEEecCCceEEEecCHHHHHHHHHHhh
Confidence 99999999999999999997654 99999999999999876 46789999999853 467899999999999998
Q ss_pred HHHHHH
Q 025716 233 AKKAAA 238 (249)
Q Consensus 233 ~~~~~~ 238 (249)
+.+.++
T Consensus 242 ~~~~~~ 247 (249)
T KOG0178|consen 242 ETQRQA 247 (249)
T ss_pred hhhhhc
Confidence 876544
No 20
>KOG0863 consensus 20S proteasome, regulatory subunit alpha type PSMA1/PRE5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.5e-49 Score=321.67 Aligned_cols=226 Identities=36% Similarity=0.593 Sum_probs=213.6
Q ss_pred CCCCCcccCCCCcchhhhhHHHHHccCCcEEEEEeCCEEEEEEeccCCcccccCCcccceEEecCCEEEEEecChhhHHH
Q 025716 4 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARV 83 (249)
Q Consensus 4 yd~~~~~fsp~G~l~Qveya~kav~~G~t~igi~~~dgVvla~d~~~~~~l~~~~~~~Ki~~I~~~i~~~~sG~~~D~~~ 83 (249)
||..+|+|||+|||+|||||++|++.|++.||+|.++..||++-++..+.|- ..++|||+|++|++++++|+++|++.
T Consensus 6 yd~d~t~wsPqGrl~QvEya~EavkqGsatVGLks~thaVLvAl~r~~seLs--s~QkKi~~iD~h~g~siAGLt~Darv 83 (264)
T KOG0863|consen 6 YDNDVTTWSPQGRLHQVEYAMEAVKQGSATVGLKSRTHAVLVALKRAQSELS--SHQKKIFKIDDHIGISIAGLTADARV 83 (264)
T ss_pred ccCceeEECCcceehHHHHHHHHHhcccceEeecccceEEEeeeccchhHHH--HhhheeEecccccceEEeccCcchHH
Confidence 8999999999999999999999999999999999999999999988777653 36899999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHhhhccCCCccceeEEEEEeeeCCCCCceEEEECCCCceeccceEee
Q 025716 84 LINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANAT 163 (249)
Q Consensus 84 l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~t~~~~~rP~gv~~ivaG~d~~~~gp~Ly~iDp~G~~~~~~~~ai 163 (249)
|.+++|.+|..++..|++++++..|...|.+.+|..||+.+.|||||.++++||| +.||+||.+.|+|++.++++.+|
T Consensus 84 l~~Ylr~ec~~~~~~~~r~~pv~rl~~~l~~k~q~~Tq~ygrRpYGVGllv~gYD--e~G~hl~e~~Psg~v~e~~g~sI 161 (264)
T KOG0863|consen 84 LSRYLRQECLNSRFIYGRPLPVLRLVEDLGDKAQENTQRYGRRPYGVGLLVAGYD--ESGPHLYEFCPSGNVFECKGMSI 161 (264)
T ss_pred HHHHHHHHHhhhhhccCCcccHHHHHHHHHHHHhhhhhhhCCccccceEEEEeec--CCCceeEEEcCCccEEEEeeeec
Confidence 9999999999999999999999999999999999999999999999999999999 58999999999999999999999
Q ss_pred cCCchHHHHHHHhhhc--cCCc-HHHHHHHHHHHHHHHhc----CCCcEEEEEEEcCCCEEEcCHHHHHHHHHHHHH
Q 025716 164 GRNSNSMREFLEKNYK--ETSG-QETIKLAIRALLEVVES----GGKNIEVAVMTREKGLKQLDEAEIDAMVAEIEA 233 (249)
Q Consensus 164 G~g~~~a~~~Le~~~~--~~~s-eeai~la~~~l~~~~~~----~~~~iei~~v~~~g~~~~~~~~ei~~~l~~i~~ 233 (249)
|+.++.++++||++.. ++++ ||+++.++.||++.+.. +..+++|+|+.+|..|..++.+++.+++.....
T Consensus 162 GsRSQsARTyLEr~~e~f~~~~~eELI~~gi~Alr~tlp~de~lt~~nvsI~Ivgkd~pf~~~d~~~~~k~~~~~~~ 238 (264)
T KOG0863|consen 162 GSRSQSARTYLERNLEEFEDSSPEELIKHGIMALRETLPEDEDLTGENVSIAIVGKDEPFTILDQKDVAKYVDLFKK 238 (264)
T ss_pred ccchhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcCcccccccceeEEEEEeCCCceEeecHHHHHHHHHHhhc
Confidence 9999999999999876 4788 99999999999999863 467999999999988999999999998887764
No 21
>TIGR03691 20S_bact_alpha proteasome, alpha subunit, bacterial type. Members of this family are the alpha subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In most Actinobacteria (an exception is Propionibacterium acnes), the proteasome is accompanied by a system of tagging proteins for degradation with Pup.
Probab=100.00 E-value=1.9e-46 Score=319.01 Aligned_cols=201 Identities=18% Similarity=0.262 Sum_probs=184.2
Q ss_pred hhhHHHHHccCCcEEEEEeCCEEEEEEeccCCcccccCCcccceEEecCCEEEEEecChhhHHHHHHHHHHHHHHhhhhc
Q 025716 20 VEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTV 99 (249)
Q Consensus 20 veya~kav~~G~t~igi~~~dgVvla~d~~~~~~l~~~~~~~Ki~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~ 99 (249)
-|||++|+++|+|+|||+++||||||+|++. ++.+|||.|++|++|+++|+.+|++.++++++.++..|++++
T Consensus 17 ~EYA~kav~~g~T~VGIk~kdgVVLaaek~~-------~~~~KI~~I~d~ig~~~sG~~~D~~~lv~~~r~~a~~~~~~~ 89 (228)
T TIGR03691 17 AELARKGIARGRSVVVLTYADGILFVAENPS-------RSLHKISELYDRIGFAAVGKYNEFENLRRAGIRYADMRGYSY 89 (228)
T ss_pred HHHHHHHHHcCCcEEEEEeCCeEEEEEecCC-------CCcCcEEEecCCEEEEEcCCHHHHHHHHHHHHHHHHHHhhhc
Confidence 4999999999999999999999999999973 358899999999999999999999999999999999999999
Q ss_pred C-CCCCHHHHHHHHHHHHHhhhccCCCccceeEEEEEeeeCCCCCceEEEECCCCceeccc-eEeecCCchHHHHHHHhh
Q 025716 100 E-DPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWK-ANATGRNSNSMREFLEKN 177 (249)
Q Consensus 100 ~-~~i~~~~la~~ls~~~~~~t~~~~~rP~gv~~ivaG~d~~~~gp~Ly~iDp~G~~~~~~-~~aiG~g~~~a~~~Le~~ 177 (249)
+ .+++++.+++++++.++.++ +++.|||+|++|++|||+.+.||+||.+||+|++.+++ ++|+|++++.++++||++
T Consensus 90 ~~~~~~v~~la~~~tq~~~~~~-~~~~RP~gvs~Li~G~d~~~~gp~Ly~vDpsG~~~~~~~~~aiG~gs~~a~~~Lek~ 168 (228)
T TIGR03691 90 DRRDVTGRGLANAYAQTLGTIF-TEQQKPYEVEICVAEVGETPDQDQLYRITFDGSIVDERGFVVMGGTTEPIATALKES 168 (228)
T ss_pred CCCCccHHHHHHHHHhhccccc-ccccCcceEEEEEEEEcCCCCCCEEEEECCCCCceeccceEEECCChHHHHHHHHHh
Confidence 8 78999999998888887666 56789999999999998424689999999999999976 899999999999999999
Q ss_pred hccCCc-HHHHHHHHHHHHHHHh-----cCCCcEEEEEEEcC---CCEEEcCHHHHHHHH
Q 025716 178 YKETSG-QETIKLAIRALLEVVE-----SGGKNIEVAVMTRE---KGLKQLDEAEIDAMV 228 (249)
Q Consensus 178 ~~~~~s-eeai~la~~~l~~~~~-----~~~~~iei~~v~~~---g~~~~~~~~ei~~~l 228 (249)
|+++|| +||++++++||..+.+ .++.+|||++++++ +.|+.++++||+++|
T Consensus 169 y~~~ms~eeai~la~~aL~~~~~~~r~~~~~~~iEv~ii~k~~~~~~f~~l~~~ei~~~l 228 (228)
T TIGR03691 169 YRDGLSLADALGLAVQALRAGGNGEKRELDAASLEVAVLDRSRPRRAFRRITGEALERLL 228 (228)
T ss_pred cCCCCCHHHHHHHHHHHHHHHhccccccCCccceEEEEEeCCCCccceEECCHHHHHhhC
Confidence 999999 9999999999999964 46789999999964 359999999998864
No 22
>TIGR03690 20S_bact_beta proteasome, beta subunit, bacterial type. Members of this family are the beta subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In Streptomyces, maturation during proteasome assembly was shown to remove a 53-amino acid propeptide. Most of the length of the propeptide is not included in this model.
Probab=100.00 E-value=2.9e-45 Score=310.80 Aligned_cols=204 Identities=19% Similarity=0.314 Sum_probs=188.0
Q ss_pred cCCcEEEEEeCCEEEEEEeccCCc-ccccCCcccceEEecCCEEEEEecChhhHHHHHHHHHHHHHHhhhhcCCCCCHHH
Q 025716 29 KGNAAVGVRGTDTIVLGVEKKSTV-KLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEY 107 (249)
Q Consensus 29 ~G~t~igi~~~dgVvla~d~~~~~-~l~~~~~~~Ki~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~ 107 (249)
+|+|+|||+++||||||+|++.++ .++.+++.+|||.|++|++|+++|+.+|++.|.+++|.++..|+++++++++++.
T Consensus 1 ~G~T~igi~~kdgVvlaad~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~ 80 (219)
T TIGR03690 1 HGTTIVALTYPGGVLMAGDRRATQGNMIASRDVEKVYPTDEYSAVGIAGTAGLAIELVRLFQVELEHYEKIEGVPLTLDG 80 (219)
T ss_pred CCcEEEEEEECCEEEEEECCccccCcEEEcCCcceEEEcCCcEEEEecccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
Confidence 489999999999999999999987 7888889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhccCCCccceeEEEEEeeeCCCCCceEEEECCCC-ceeccceEeecCCchHHHHHHHhhhccCCc-HH
Q 025716 108 ITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSG-TFSAWKANATGRNSNSMREFLEKNYKETSG-QE 185 (249)
Q Consensus 108 la~~ls~~~~~~t~~~~~rP~gv~~ivaG~d~~~~gp~Ly~iDp~G-~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s-ee 185 (249)
++++|++++|.+++ ..+|||+|++||||||+.+++|+||.+||+| ++..++++|+|+|+..++++||+.|+++|| +|
T Consensus 81 la~~ls~~~~~~~~-~~~rp~~v~~iiaG~D~~~~~~~Ly~~Dp~G~~~~~~~~~a~G~g~~~a~~~Le~~~~~~ms~ee 159 (219)
T TIGR03690 81 KANRLAAMVRGNLP-AAMQGLAVVPLLAGYDLDAGAGRIFSYDVTGGRYEERGYHAVGSGSVFAKGALKKLYSPDLDEDD 159 (219)
T ss_pred HHHHHHHHHHhhhh-hccCCceEEEEEEEECCCCCCcEEEEEeCCCCeeecCCeEEEeccHHHHHHHHHhcCCCCcCHHH
Confidence 99999999988874 4589999999999999523689999999999 577889999999999999999999999999 99
Q ss_pred HHHHHHHHHHHHHhcC---CC--c-----EEEEEEEcCCCEEEcCHHHHHHHHHHHHHH
Q 025716 186 TIKLAIRALLEVVESG---GK--N-----IEVAVMTREKGLKQLDEAEIDAMVAEIEAK 234 (249)
Q Consensus 186 ai~la~~~l~~~~~~~---~~--~-----iei~~v~~~g~~~~~~~~ei~~~l~~i~~~ 234 (249)
|++++++||..+.+++ ++ . +||++++++| ++.++++||++++.++.+.
T Consensus 160 ai~l~~~al~~~~~~d~~s~~~~~~~~~~~ei~ii~~~g-~~~l~~~ei~~~~~~~~~~ 217 (219)
T TIGR03690 160 ALRVAVEALYDAADDDSATGGPDLVRGIYPTVVVITADG-ARRVPESELEELARAIVES 217 (219)
T ss_pred HHHHHHHHHHHHHhcccccCCcccccccccEEEEEccCc-eEEcCHHHHHHHHHHHHhc
Confidence 9999999999999853 33 3 3999999888 9999999999999988753
No 23
>PTZ00488 Proteasome subunit beta type-5; Provisional
Probab=100.00 E-value=1.5e-44 Score=310.90 Aligned_cols=201 Identities=21% Similarity=0.330 Sum_probs=187.1
Q ss_pred HHccCCcEEEEEeCCEEEEEEeccCCc-ccccCCcccceEEecCCEEEEEecChhhHHHHHHHHHHHHHHhhhhcCCCCC
Q 025716 26 AVRKGNAAVGVRGTDTIVLGVEKKSTV-KLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVT 104 (249)
Q Consensus 26 av~~G~t~igi~~~dgVvla~d~~~~~-~l~~~~~~~Ki~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~ 104 (249)
.+.+|+|+|||+++||||||+|++.+. .++.+++.+||+.|++|++++++|+.+|++.|.+++|.++..|++++|++++
T Consensus 35 ~~~~G~T~IgIk~kdgVvlAaD~r~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~lr~~~~~y~~~~g~~is 114 (247)
T PTZ00488 35 EFAHGTTTLAFKYGGGIIIAVDSKATAGPYIASQSVKKVIEINPTLLGTMAGGAADCSFWERELAMQCRLYELRNGELIS 114 (247)
T ss_pred ccCCCceEEEEEeCCEEEEEEecCcccCCEEEcCCcCceEEcCCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 356899999999999999999999886 7777889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhccCCCcccee--EEEEEeeeCCCCCceEEEECCCCceeccceEeecCCchHHHHHHHhhhccCC
Q 025716 105 VEYITRYIAGLQQKYTQSGGVRPFGL--STLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKETS 182 (249)
Q Consensus 105 ~~~la~~ls~~~~~~t~~~~~rP~gv--~~ivaG~d~~~~gp~Ly~iDp~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~ 182 (249)
++.++++|+++++.+ ||+++ ++|||||| ++||+||++||+|++.+++++++|+|+..++++||+.|+++|
T Consensus 115 v~~la~~ls~~l~~~------R~~~~~v~~iiaG~D--~~gp~Ly~vDp~Gs~~~~~~~a~G~gs~~~~~~Le~~~k~dm 186 (247)
T PTZ00488 115 VAAASKILANIVWNY------KGMGLSMGTMICGWD--KKGPGLFYVDNDGTRLHGNMFSCGSGSTYAYGVLDAGFKWDL 186 (247)
T ss_pred HHHHHHHHHHHHHhc------CCCCeeEEEEEEEEe--CCCCEEEEEcCCcceeecCCEEEccCHHHHHHHHHhcCcCCC
Confidence 999999999999754 55555 48999999 468999999999999999999999999999999999999999
Q ss_pred c-HHHHHHHHHHHHHHHhc---CCCcEEEEEEEcCCCEEEcCHHHHHHHHHHHHHHH
Q 025716 183 G-QETIKLAIRALLEVVES---GGKNIEVAVMTREKGLKQLDEAEIDAMVAEIEAKK 235 (249)
Q Consensus 183 s-eeai~la~~~l~~~~~~---~~~~iei~~v~~~g~~~~~~~~ei~~~l~~i~~~~ 235 (249)
+ +||++++++||+++..+ ++++++|++|+++| ++.++++||++++.++++..
T Consensus 187 s~eEai~l~~kal~~~~~Rd~~sg~~~ei~iI~k~g-~~~l~~~ei~~~l~~~~~~~ 242 (247)
T PTZ00488 187 NDEEAQDLGRRAIYHATFRDAYSGGAINLYHMQKDG-WKKISADDCFDLHQKYAAEK 242 (247)
T ss_pred CHHHHHHHHHHHHHHHHHhccccCCCeEEEEEcCCc-cEECCHHHHHHHHHHHhhhc
Confidence 9 99999999999999874 57899999999998 99999999999999988543
No 24
>cd03758 proteasome_beta_type_2 proteasome beta type-2 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.9e-44 Score=299.13 Aligned_cols=185 Identities=21% Similarity=0.328 Sum_probs=174.4
Q ss_pred CcEEEEEeCCEEEEEEeccCCc-ccccCCcccceEEecCCEEEEEecChhhHHHHHHHHHHHHHHhhhhcCCCCCHHHHH
Q 025716 31 NAAVGVRGTDTIVLGVEKKSTV-KLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYIT 109 (249)
Q Consensus 31 ~t~igi~~~dgVvla~d~~~~~-~l~~~~~~~Ki~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la 109 (249)
+|+|||+++||||||+|++.+. .++.+++.+|||+|++|++++++|..+|++.|.+++|.++..|+++++++++++.++
T Consensus 2 ~t~igi~~~dgVvlaad~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~~~~la 81 (193)
T cd03758 2 ETLIGIKGKDFVILAADTSAARSILVLKDDEDKIYKLSDHKLMACSGEAGDRLQFAEYIQKNIQLYKMRNGYELSPKAAA 81 (193)
T ss_pred ceEEEEEeCCEEEEEEcCccccCcEEEecCcccEEEeCCCeEEEEccchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 7899999999999999999976 567778999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhccCCCccceeEEEEEeeeCCCCCceEEEECCCCceeccceEeecCCchHHHHHHHhhhccCCc-HHHHH
Q 025716 110 RYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKETSG-QETIK 188 (249)
Q Consensus 110 ~~ls~~~~~~t~~~~~rP~gv~~ivaG~d~~~~gp~Ly~iDp~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s-eeai~ 188 (249)
+++++++|.|++.. |||+|++||+|||+ +++|+||.+||+|++.+++++|+|+|+.+++++||+.|+++|| +||++
T Consensus 82 ~~l~~~~~~~~~~~--rP~~~~~li~G~d~-~~~p~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~ms~eeai~ 158 (193)
T cd03758 82 NFTRRELAESLRSR--TPYQVNLLLAGYDK-VEGPSLYYIDYLGTLVKVPYAAHGYGAYFCLSILDRYYKPDMTVEEALE 158 (193)
T ss_pred HHHHHHHHHHhhcC--CCeEEEEEEEEEcC-CCCcEEEEECCCcceEECCeeEEeecHHHHHHHHHhccCCCCCHHHHHH
Confidence 99999999887653 89999999999996 6899999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHhc---CCCcEEEEEEEcCCCEEEc
Q 025716 189 LAIRALLEVVES---GGKNIEVAVMTREKGLKQL 219 (249)
Q Consensus 189 la~~~l~~~~~~---~~~~iei~~v~~~g~~~~~ 219 (249)
++++||+.+.++ ++++++|++|+++| ++.+
T Consensus 159 l~~~a~~~~~~rd~~~~~~i~i~ii~~~g-~~~~ 191 (193)
T cd03758 159 LMKKCIKELKKRFIINLPNFTVKVVDKDG-IRDL 191 (193)
T ss_pred HHHHHHHHHHHhccccCCceEEEEEcCCC-eEeC
Confidence 999999999874 57899999999998 6654
No 25
>cd03760 proteasome_beta_type_4 proteasome beta type-4 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.3e-44 Score=300.66 Aligned_cols=187 Identities=18% Similarity=0.219 Sum_probs=174.6
Q ss_pred cCCcEEEEEeCCEEEEEEeccCC-cccccCCcccceEEecCCEEEEEecChhhHHHHHHHHHHHHH-HhhhhcCCCCCHH
Q 025716 29 KGNAAVGVRGTDTIVLGVEKKST-VKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQ-SHRLTVEDPVTVE 106 (249)
Q Consensus 29 ~G~t~igi~~~dgVvla~d~~~~-~~l~~~~~~~Ki~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~-~~~~~~~~~i~~~ 106 (249)
.|+|+|||+++||||||+|++.+ ..++.+++.+|||+|++|++++++|+.+|++.+++++|.++. .|+++++++++++
T Consensus 1 ~G~T~igi~~kdgVvlaad~r~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~ 80 (197)
T cd03760 1 TGTSVIAIKYKDGVIIAADTLGSYGSLARFKNVERIFKVGDNTLLGASGDYADFQYLKRLLDQLVIDDECLDDGHSLSPK 80 (197)
T ss_pred CCceEEEEEeCCcEEEEEcCcccccceeecCCCCcEEEecCcEEEEeCcchHHHHHHHHHHHHHHHHHHHHhCCCCCCHH
Confidence 48999999999999999999998 478888889999999999999999999999999999999987 4678899999999
Q ss_pred HHHHHHHHHHHhhhccCCCccceeEEEEEeeeCCCCCceEEEECCCCceeccceEeecCCchHHHHHHHhhhcc--CCc-
Q 025716 107 YITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKE--TSG- 183 (249)
Q Consensus 107 ~la~~ls~~~~~~t~~~~~rP~gv~~ivaG~d~~~~gp~Ly~iDp~G~~~~~~~~aiG~g~~~a~~~Le~~~~~--~~s- 183 (249)
.+++++++++ |++++++|||+|++||||||+ +++|+||.+||+|++.+++++|+|+|+.+++++||+.|++ +||
T Consensus 81 ~la~~i~~~~--y~~~~~~rP~~v~~iiaG~D~-~~gp~Ly~~D~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~ms~ 157 (197)
T cd03760 81 EIHSYLTRVL--YNRRSKMNPLWNTLVVGGVDN-EGEPFLGYVDLLGTAYEDPHVATGFGAYLALPLLREAWEKKPDLTE 157 (197)
T ss_pred HHHHHHHHHH--HHHhhcCCCceEEEEEEEEcC-CCCEEEEEEcCCccEEECCEeEEccHHHHHHHHHHhhcCCCCCCCH
Confidence 9999999986 788888999999999999995 5899999999999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHHHHHHhc---CCCcEEEEEEEcCCCEEEc
Q 025716 184 QETIKLAIRALLEVVES---GGKNIEVAVMTREKGLKQL 219 (249)
Q Consensus 184 eeai~la~~~l~~~~~~---~~~~iei~~v~~~g~~~~~ 219 (249)
+|+++++++||+.+.++ ++++++|++|+++| ++.-
T Consensus 158 eea~~l~~~~l~~~~~rd~~~~~~~~i~ii~~~g-~~~~ 195 (197)
T cd03760 158 EEARALIEECMKVLYYRDARSINKYQIAVVTKEG-VEIE 195 (197)
T ss_pred HHHHHHHHHHHHHHHHhccccCCceEEEEECCCC-EEeC
Confidence 99999999999999874 57899999999998 6553
No 26
>cd03759 proteasome_beta_type_3 proteasome beta type-3 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.2e-43 Score=296.00 Aligned_cols=181 Identities=23% Similarity=0.385 Sum_probs=169.5
Q ss_pred cCCcEEEEEeCCEEEEEEeccCCccccc-CCcccceEEecCCEEEEEecChhhHHHHHHHHHHHHHHhhhhcCCCCCHHH
Q 025716 29 KGNAAVGVRGTDTIVLGVEKKSTVKLQD-SRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEY 107 (249)
Q Consensus 29 ~G~t~igi~~~dgVvla~d~~~~~~l~~-~~~~~Ki~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~ 107 (249)
+|+|+|||+++||||||+|++.+++++. .++.+|||+|++|++++++|..+|++.+++++|.++..|+++++++++++.
T Consensus 2 ~G~t~igik~~dgVvlaad~~~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~ 81 (195)
T cd03759 2 NGGAVVAMAGKDCVAIASDLRLGVQQQTVSTDFQKVFRIGDRLYIGLAGLATDVQTLAQKLRFRVNLYRLREEREIKPKT 81 (195)
T ss_pred CCceEEEEEcCCEEEEEEccccccCCEeEecCCCeEEEeCCCEEEEccchHHHHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 6999999999999999999999887755 557899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhccCCCccceeEEEEEeeeCCCCCceEEEECCCCceeccc-eEeecCCchHHHHHHHhhhccCCc-HH
Q 025716 108 ITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWK-ANATGRNSNSMREFLEKNYKETSG-QE 185 (249)
Q Consensus 108 la~~ls~~~~~~t~~~~~rP~gv~~ivaG~d~~~~gp~Ly~iDp~G~~~~~~-~~aiG~g~~~a~~~Le~~~~~~~s-ee 185 (249)
+++++++++ |+++ .|||+|++||||||+ +++|+||.+||+|++..+. ++|+|+|++.++++||+.|+++|+ +|
T Consensus 82 la~~l~~~l--y~~r--~~P~~v~~ii~G~D~-~~~p~Ly~~D~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~e 156 (195)
T cd03759 82 FSSLISSLL--YEKR--FGPYFVEPVVAGLDP-DGKPFICTMDLIGCPSIPSDFVVSGTASEQLYGMCESLWRPDMEPDE 156 (195)
T ss_pred HHHHHHHHH--HHhc--CCCceEEEEEEEEcC-CCCEEEEEEcCCCcccccCCEEEEcccHHHHHHHHHhccCCCCCHHH
Confidence 999999998 5543 589999999999997 6789999999999998887 999999999999999999999999 99
Q ss_pred HHHHHHHHHHHHHhc---CCCcEEEEEEEcCC
Q 025716 186 TIKLAIRALLEVVES---GGKNIEVAVMTREK 214 (249)
Q Consensus 186 ai~la~~~l~~~~~~---~~~~iei~~v~~~g 214 (249)
|++++++||..+..+ ++++++|++|+++|
T Consensus 157 a~~l~~~~l~~~~~rd~~~~~~~~i~ii~~~g 188 (195)
T cd03759 157 LFETISQALLSAVDRDALSGWGAVVYIITKDK 188 (195)
T ss_pred HHHHHHHHHHHHHhhCcccCCceEEEEEcCCc
Confidence 999999999999874 57899999999998
No 27
>cd03761 proteasome_beta_type_5 proteasome beta type-5 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.3e-43 Score=292.56 Aligned_cols=182 Identities=19% Similarity=0.326 Sum_probs=172.0
Q ss_pred CcEEEEEeCCEEEEEEeccCCc-ccccCCcccceEEecCCEEEEEecChhhHHHHHHHHHHHHHHhhhhcCCCCCHHHHH
Q 025716 31 NAAVGVRGTDTIVLGVEKKSTV-KLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYIT 109 (249)
Q Consensus 31 ~t~igi~~~dgVvla~d~~~~~-~l~~~~~~~Ki~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la 109 (249)
+|+|||+++||||||+|++.++ .++.+++.+|||+|++|++++++|+.+|++.|++++|.++..|+++++++++++.++
T Consensus 1 tT~igi~~kdgVvla~d~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~y~~~~~~~i~~~~la 80 (188)
T cd03761 1 TTTLAFIFQGGVIVAVDSRATAGSYIASQTVKKVIEINPYLLGTMAGGAADCQYWERVLGRECRLYELRNKERISVAAAS 80 (188)
T ss_pred CcEEEEEECCEEEEEEcCCccCCcEEEcCCcceEEEccCcEEEEeCccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 5899999999999999999988 567778899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhccCCCccceeEEEEEeeeCCCCCceEEEECCCCceeccceEeecCCchHHHHHHHhhhccCCc-HHHHH
Q 025716 110 RYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKETSG-QETIK 188 (249)
Q Consensus 110 ~~ls~~~~~~t~~~~~rP~gv~~ivaG~d~~~~gp~Ly~iDp~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s-eeai~ 188 (249)
+++++++|.+++ .||+|++|||||| ++||+||.+||+|++.+++++++|+|+.+++++||+.|+++|+ +||++
T Consensus 81 ~~ls~~l~~~~~----~~~~v~~li~G~D--~~g~~L~~~dp~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~eea~~ 154 (188)
T cd03761 81 KLLSNMLYQYKG----MGLSMGTMICGWD--KTGPGLYYVDSDGTRLKGDLFSVGSGSTYAYGVLDSGYRYDLSVEEAYD 154 (188)
T ss_pred HHHHHHHHhcCC----CCeEEEEEEEEEe--CCCCEEEEEcCCceEEEcCeEEEcccHHHHHHHHHhcCCCCCCHHHHHH
Confidence 999999998864 4899999999999 5799999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHhc---CCCcEEEEEEEcCCCEEEc
Q 025716 189 LAIRALLEVVES---GGKNIEVAVMTREKGLKQL 219 (249)
Q Consensus 189 la~~~l~~~~~~---~~~~iei~~v~~~g~~~~~ 219 (249)
++++||..+.++ ++++++|++|+++| ++.+
T Consensus 155 l~~~~l~~~~~rd~~sg~~~~v~ii~~~g-~~~~ 187 (188)
T cd03761 155 LARRAIYHATHRDAYSGGNVNLYHVREDG-WRKI 187 (188)
T ss_pred HHHHHHHHHHHhcccCCCCeEEEEEcCCc-eEEc
Confidence 999999999874 57899999999998 7655
No 28
>TIGR03634 arc_protsome_B proteasome endopeptidase complex, archaeal, beta subunit. This protein family describes the archaeal proteasome beta subunit, homologous to both the alpha subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=100.00 E-value=2.2e-42 Score=285.83 Aligned_cols=179 Identities=30% Similarity=0.498 Sum_probs=170.0
Q ss_pred CCcEEEEEeCCEEEEEEeccCCc-ccccCCcccceEEecCCEEEEEecChhhHHHHHHHHHHHHHHhhhhcCCCCCHHHH
Q 025716 30 GNAAVGVRGTDTIVLGVEKKSTV-KLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYI 108 (249)
Q Consensus 30 G~t~igi~~~dgVvla~d~~~~~-~l~~~~~~~Ki~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l 108 (249)
|+|+|||+++||||||+|++.+. .++.+++.+|||+|++|++++++|..+|++.+.++++.++..|+..++++++++.+
T Consensus 1 G~t~igi~~~dgVvla~d~~~~~~~~i~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 80 (185)
T TIGR03634 1 GTTTVGIKCKDGVVLAADKRASMGNFVASKNAKKVFQIDDYIAMTIAGSVGDAQSLVRILKAEAKLYELRRGRPMSVKAL 80 (185)
T ss_pred CCcEEEEEeCCEEEEEEcCcccCCCEEecCCcccEEEcCCCEEEEcCchHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 78999999999999999999885 67777889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhccCCCccceeEEEEEeeeCCCCCceEEEECCCCceeccceEeecCCchHHHHHHHhhhccCCc-HHHH
Q 025716 109 TRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKETSG-QETI 187 (249)
Q Consensus 109 a~~ls~~~~~~t~~~~~rP~gv~~ivaG~d~~~~gp~Ly~iDp~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s-eeai 187 (249)
++++++++|.+ +.|||+|++||||||+ +||+||.+||+|++.+++++++|+++.+++++||+.|+++|| +||+
T Consensus 81 a~~l~~~~~~~----~~rP~~v~~ivaG~d~--~g~~Ly~~d~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~ 154 (185)
T TIGR03634 81 ATLLSNILNSN----RFFPFIVQLLVGGVDE--EGPHLYSLDPAGGIIEDDYTATGSGSPVAYGVLEDEYREDMSVEEAK 154 (185)
T ss_pred HHHHHHHHHhc----CCCCeEEEEEEEEEeC--CCCEEEEECCCCCeEECCEEEEcCcHHHHHHHHHhcCCCCCCHHHHH
Confidence 99999999765 5799999999999994 689999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHHhc---CCCcEEEEEEEcCC
Q 025716 188 KLAIRALLEVVES---GGKNIEVAVMTREK 214 (249)
Q Consensus 188 ~la~~~l~~~~~~---~~~~iei~~v~~~g 214 (249)
+++++||+.+.++ ++.+++|++|+++|
T Consensus 155 ~l~~~~l~~~~~r~~~~~~~~~v~ii~~~g 184 (185)
T TIGR03634 155 KLAVRAIKSAIERDVASGNGIDVAVITKDG 184 (185)
T ss_pred HHHHHHHHHHHHhcccCCCCEEEEEEcCCC
Confidence 9999999999874 57899999999987
No 29
>cd03757 proteasome_beta_type_1 proteasome beta type-1 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.8e-42 Score=291.20 Aligned_cols=185 Identities=19% Similarity=0.370 Sum_probs=171.6
Q ss_pred HccCCcEEEEEeCCEEEEEEeccCCccc-ccCCcccceEEecCCEEEEEecChhhHHHHHHHHHHHHHHhhhhcCCCCCH
Q 025716 27 VRKGNAAVGVRGTDTIVLGVEKKSTVKL-QDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTV 105 (249)
Q Consensus 27 v~~G~t~igi~~~dgVvla~d~~~~~~l-~~~~~~~Ki~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~ 105 (249)
+++|+|+|||+++||||||+|++.++++ +..++.+||++|++|++++++|..+|++.+.+++|.+++.|++++|+++++
T Consensus 5 ~~~G~Tvigik~~dgVvlaaD~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~i~~ 84 (212)
T cd03757 5 TDNGGTVLAIAGNDFAVIAGDTRLSEGYSILSRDSPKIFKLTDKCVLGSSGFQADILALTKRLKARIKMYKYSHNKEMST 84 (212)
T ss_pred cCCCccEEEEEcCCEEEEEECCccccCCEeEeCCCCeEEEcCCCEEEEccchHHHHHHHHHHHHHHHHHHhHHhCCCCCH
Confidence 3689999999999999999999998866 446789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhccCCCccceeEEEEEeeeCCCCCceEEEECCCCceeccceEeecCCchHHHHHHHhhhc------
Q 025716 106 EYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYK------ 179 (249)
Q Consensus 106 ~~la~~ls~~~~~~t~~~~~rP~gv~~ivaG~d~~~~gp~Ly~iDp~G~~~~~~~~aiG~g~~~a~~~Le~~~~------ 179 (249)
+.++++++.+++ .+ +.|||+|++||||||+ +++|+||.+||+|++.+++++|+|+|+.+++++||+.|+
T Consensus 85 ~~la~~ls~~ly--~~--R~~P~~~~~iiaG~D~-~~~p~Ly~~D~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~ 159 (212)
T cd03757 85 EAIAQLLSTILY--SR--RFFPYYVFNILAGIDE-EGKGVVYSYDPVGSYERETYSAGGSASSLIQPLLDNQVGRKNQNN 159 (212)
T ss_pred HHHHHHHHHHHH--hh--cCCCeEEEEEEEEEcC-CCCEEEEEEcCccCeeecCEEEEeecHHHHHHHHHHHHHhhccCc
Confidence 999999999984 33 2479999999999996 678999999999999999999999999999999999985
Q ss_pred ---cCCc-HHHHHHHHHHHHHHHhc---CCCcEEEEEEEcCCCEE
Q 025716 180 ---ETSG-QETIKLAIRALLEVVES---GGKNIEVAVMTREKGLK 217 (249)
Q Consensus 180 ---~~~s-eeai~la~~~l~~~~~~---~~~~iei~~v~~~g~~~ 217 (249)
++|| +||++++++||+.+..+ ++++++|++|+++| ++
T Consensus 160 ~~~~~ms~eea~~l~~~~l~~~~~rd~~sg~~i~i~iit~~g-~~ 203 (212)
T cd03757 160 VERTPLSLEEAVSLVKDAFTSAAERDIYTGDSLEIVIITKDG-IE 203 (212)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHhCcccCCCEEEEEEcCCC-EE
Confidence 8999 99999999999999874 57899999999998 54
No 30
>cd03765 proteasome_beta_bacterial Bacterial proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=8.3e-42 Score=291.16 Aligned_cols=200 Identities=18% Similarity=0.210 Sum_probs=174.9
Q ss_pred CcEEEEEeCCEEEEEEeccCCcccccCCcccceEEec----CCEEEEEecChhhHHHHHHHHHHHHHHhhhhcCC-CCCH
Q 025716 31 NAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLD----NHIALACAGLKADARVLINRARIECQSHRLTVED-PVTV 105 (249)
Q Consensus 31 ~t~igi~~~dgVvla~d~~~~~~l~~~~~~~Ki~~I~----~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~-~i~~ 105 (249)
+.+|||+++||||||+|+|.+++++..++.+||++|+ +|++|++||+.+|++.|++++|.+++.|++++|+ ++++
T Consensus 1 ~~~vGIk~kdGVVLaadkr~~~~l~~~~~~~KI~~I~~~~d~~I~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~~~~v 80 (236)
T cd03765 1 TYCLGIKLDAGLVFASDSRTNAGVDNISTYRKMFVFSVPGERVIVLLTAGNLATTQAVISLLQRDLEDPEETNLLNAPTM 80 (236)
T ss_pred CeEEEEEeCCeEEEEEccCccCCCccccccceEEEecCCCCCEEEEEcCCcHHHHHHHHHHHHHHHHhhHHhhCCCCCCH
Confidence 4689999999999999999988876666799999998 8999999999999999999999999999999999 8999
Q ss_pred HHHHHHHHHHHH-hhhccCC-----CccceeEEEEEeeeCCCCCceEEEECCCCceecc----ceEeecCCchHHHHHHH
Q 025716 106 EYITRYIAGLQQ-KYTQSGG-----VRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAW----KANATGRNSNSMREFLE 175 (249)
Q Consensus 106 ~~la~~ls~~~~-~~t~~~~-----~rP~gv~~ivaG~d~~~~gp~Ly~iDp~G~~~~~----~~~aiG~g~~~a~~~Le 175 (249)
+.+|++++++++ .++++.+ .|||+|++||+|||+ +.||+||.+||+|++.++ +++|+|. +..++++||
T Consensus 81 ~~la~~i~~~l~~~~~q~~~~~~~~~rp~gvslIigG~D~-~~Gp~LY~idpsG~~~e~~a~~~~~AiG~-~~~a~~~Le 158 (236)
T cd03765 81 FDAARYVGETLREVQEQDREALKKAGIDFSASFILGGQIK-GEEPRLFLIYPQGNFIEATPDTPFLQIGE-TKYGKPILD 158 (236)
T ss_pred HHHHHHHHHHHHHHHhhcccccccCCcceEEEEEEEeEEC-CCCCEEEEECCCCCEEeecCCCceeeeCC-chhhHHHHH
Confidence 999999999864 4566554 489999999999996 678999999999999998 5689996 699999999
Q ss_pred hhhccCCc-HHHHHHHHHHHHHHHhc---CCCcEEEEEEEcCCCEEEc---CHHHHHHHHHHHHH
Q 025716 176 KNYKETSG-QETIKLAIRALLEVVES---GGKNIEVAVMTREKGLKQL---DEAEIDAMVAEIEA 233 (249)
Q Consensus 176 ~~~~~~~s-eeai~la~~~l~~~~~~---~~~~iei~~v~~~g~~~~~---~~~ei~~~l~~i~~ 233 (249)
++|+++|| +||++++++||.++..+ ++.+|+|++|+++| ++.. --++=++++.++..
T Consensus 159 k~yk~~ms~eeai~la~~al~~a~~rd~~sg~~iev~vI~k~G-~~~~~~~~~~~~~~~~~~~~~ 222 (236)
T cd03765 159 RVITPDTSLEDAAKCALVSMDSTMRSNLSVGPPLDLLVYERDS-LQVGHYRRIEEDDPYFAMIRK 222 (236)
T ss_pred HhcCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEECCC-eeeeeeEEecCCCHHHHHHHH
Confidence 99999999 99999999999999975 57899999999998 4331 12223456666654
No 31
>cd03764 proteasome_beta_archeal Archeal proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme for non-lysosomal protein degradation in both the cytosol and the nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are both members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=8.6e-42 Score=283.08 Aligned_cols=183 Identities=31% Similarity=0.493 Sum_probs=172.8
Q ss_pred CcEEEEEeCCEEEEEEeccCCc-ccccCCcccceEEecCCEEEEEecChhhHHHHHHHHHHHHHHhhhhcCCCCCHHHHH
Q 025716 31 NAAVGVRGTDTIVLGVEKKSTV-KLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYIT 109 (249)
Q Consensus 31 ~t~igi~~~dgVvla~d~~~~~-~l~~~~~~~Ki~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la 109 (249)
+|+|||+++||||||+|++.++ .++.+++.+||++|++|++++++|+.+|++.|.+.++.++..|++.++++++++.++
T Consensus 1 tt~iai~~~dgvvia~d~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (188)
T cd03764 1 TTTVGIVCKDGVVLAADKRASMGNFIASKNVKKIFQIDDKIAMTIAGSVGDAQSLVRILKAEARLYELRRGRPMSIKALA 80 (188)
T ss_pred CcEEEEEeCCEEEEEEccccccCCEEecCCcccEEEccCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 5899999999999999999987 677778999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhccCCCccceeEEEEEeeeCCCCCceEEEECCCCceeccceEeecCCchHHHHHHHhhhccCCc-HHHHH
Q 025716 110 RYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKETSG-QETIK 188 (249)
Q Consensus 110 ~~ls~~~~~~t~~~~~rP~gv~~ivaG~d~~~~gp~Ly~iDp~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s-eeai~ 188 (249)
+++++.+|.+ +.|||+|++|||||| +++|+||.+||+|++.+++++|+|+|+.+++++|++.|+++|+ +|+++
T Consensus 81 ~~i~~~~~~~----~~~P~~~~~lvaG~d--~~~~~ly~~D~~G~~~~~~~~a~G~g~~~~~~~L~~~~~~~~~~~ea~~ 154 (188)
T cd03764 81 TLLSNILNSS----KYFPYIVQLLIGGVD--EEGPHLYSLDPLGSIIEDKYTATGSGSPYAYGVLEDEYKEDMTVEEAKK 154 (188)
T ss_pred HHHHHHHHhc----CCCCcEEEEEEEEEe--CCCCEEEEECCCCCEEEcCEEEEcCcHHHHHHHHHhcCCCCCCHHHHHH
Confidence 9999999765 579999999999999 4789999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHhc---CCCcEEEEEEEcCCCEEEcC
Q 025716 189 LAIRALLEVVES---GGKNIEVAVMTREKGLKQLD 220 (249)
Q Consensus 189 la~~~l~~~~~~---~~~~iei~~v~~~g~~~~~~ 220 (249)
++++||+.+.++ ++++++|++|+++| +++++
T Consensus 155 l~~~~l~~~~~rd~~~~~~i~i~iv~~~g-~~~~~ 188 (188)
T cd03764 155 LAIRAIKSAIERDSASGDGIDVVVITKDG-YKELE 188 (188)
T ss_pred HHHHHHHHHHhhcCCCCCcEEEEEECCCC-eEeCC
Confidence 999999999874 57899999999998 88764
No 32
>cd03763 proteasome_beta_type_7 proteasome beta type-7 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.6e-41 Score=280.45 Aligned_cols=183 Identities=24% Similarity=0.322 Sum_probs=170.3
Q ss_pred CcEEEEEeCCEEEEEEeccCCcc-cccCCcccceEEecCCEEEEEecChhhHHHHHHHHHHHHHHhhhhcCCCCCHHHHH
Q 025716 31 NAAVGVRGTDTIVLGVEKKSTVK-LQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYIT 109 (249)
Q Consensus 31 ~t~igi~~~dgVvla~d~~~~~~-l~~~~~~~Ki~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la 109 (249)
+|+|||+|+||||||+|+|.++. ++.+++.+|||.|++|++++++|..+|++.+.+++|.+++.|+++++++++++.++
T Consensus 1 tt~igi~~~dgvvlaad~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~a 80 (189)
T cd03763 1 TTIVGVVFKDGVVLGADTRATEGPIVADKNCEKIHYIAPNIYCCGAGTAADTEAVTNMISSNLELHRLNTGRKPRVVTAL 80 (189)
T ss_pred CeEEEEEECCeEEEEEcCCcccCceEEcCCccceEEecCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 58999999999999999999884 66677899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhccCCCccceeEEEEEeeeCCCCCceEEEECCCCceeccceEeecCCchHHHHHHHhhhccCCc-HHHHH
Q 025716 110 RYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKETSG-QETIK 188 (249)
Q Consensus 110 ~~ls~~~~~~t~~~~~rP~gv~~ivaG~d~~~~gp~Ly~iDp~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s-eeai~ 188 (249)
+++++.++.|. .||+|++|||||| ++||+||.+||.|++.+++++++|+++..++++|+++|+++|| +||++
T Consensus 81 ~~l~~~l~~~~-----~p~~v~~ivaG~d--~~g~~ly~~d~~G~~~~~~~~a~G~~~~~~~~~L~~~~~~~ls~~ea~~ 153 (189)
T cd03763 81 TMLKQHLFRYQ-----GHIGAALVLGGVD--YTGPHLYSIYPHGSTDKLPFVTMGSGSLAAMSVLEDRYKPDMTEEEAKK 153 (189)
T ss_pred HHHHHHHHHcC-----CccceeEEEEeEc--CCCCEEEEECCCCCEEecCEEEEcCCHHHHHHHHHhhcCCCCCHHHHHH
Confidence 99999998653 3999999999999 4689999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHhc---CCCcEEEEEEEcCCCEEEcCH
Q 025716 189 LAIRALLEVVES---GGKNIEVAVMTREKGLKQLDE 221 (249)
Q Consensus 189 la~~~l~~~~~~---~~~~iei~~v~~~g~~~~~~~ 221 (249)
++++||+.+..+ ++++++|++|+++| ++...|
T Consensus 154 l~~~~l~~~~~rd~~~~~~~~v~ii~~~g-~~~~~~ 188 (189)
T cd03763 154 LVCEAIEAGIFNDLGSGSNVDLCVITKDG-VEYLRN 188 (189)
T ss_pred HHHHHHHHHHHhcCcCCCceEEEEEcCCc-EEEecC
Confidence 999999999875 57899999999998 765543
No 33
>cd03762 proteasome_beta_type_6 proteasome beta type-6 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=4e-41 Score=279.06 Aligned_cols=180 Identities=19% Similarity=0.327 Sum_probs=169.7
Q ss_pred CcEEEEEeCCEEEEEEeccCCc-ccccCCcccceEEecCCEEEEEecChhhHHHHHHHHHHHHHHhhhhcCCCCCHHHHH
Q 025716 31 NAAVGVRGTDTIVLGVEKKSTV-KLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYIT 109 (249)
Q Consensus 31 ~t~igi~~~dgVvla~d~~~~~-~l~~~~~~~Ki~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la 109 (249)
+|+|||+++||||||+|++.++ .++.+++.+||++|++|++++++|+.+|++.|.++++.+++.|+.+++++++++.++
T Consensus 1 ~t~igi~~~dgVvla~D~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~~~~~a 80 (188)
T cd03762 1 TTIIAVEYDGGVVLGADSRTSTGSYVANRVTDKLTQLHDRIYCCRSGSAADTQAIADYVRYYLDMHSIELGEPPLVKTAA 80 (188)
T ss_pred CeEEEEEECCeEEEEEcccccCCceEEcCCcccEEEccCCEEEEecccHHHHHHHHHHHHHHHHHhHHhhCCCCCHHHHH
Confidence 5899999999999999999988 566777899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhccCCCccceeEEEEEeeeCCCCCceEEEECCCCceeccceEeecCCchHHHHHHHhhhccCCc-HHHHH
Q 025716 110 RYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKETSG-QETIK 188 (249)
Q Consensus 110 ~~ls~~~~~~t~~~~~rP~gv~~ivaG~d~~~~gp~Ly~iDp~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s-eeai~ 188 (249)
+++++++|.++ |||+|++||||+|+ ++||+||.+||.|++.+++++++|+++..++++|++.|+++|+ +||++
T Consensus 81 ~~l~~~~~~~~-----~~~~~~~ii~G~d~-~~gp~ly~~d~~G~~~~~~~~~~G~g~~~~~~~Le~~~~~~~s~~ea~~ 154 (188)
T cd03762 81 SLFKNLCYNYK-----EMLSAGIIVAGWDE-QNGGQVYSIPLGGMLIRQPFAIGGSGSTYIYGYVDANYKPGMTLEECIK 154 (188)
T ss_pred HHHHHHHHhcc-----ccceeeEEEEEEcC-CCCcEEEEECCCCCEEecCEEEEcccHHHHHHHHHhcCCCCCCHHHHHH
Confidence 99999997654 78999999999996 6789999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHhc---CCCcEEEEEEEcCCCEE
Q 025716 189 LAIRALLEVVES---GGKNIEVAVMTREKGLK 217 (249)
Q Consensus 189 la~~~l~~~~~~---~~~~iei~~v~~~g~~~ 217 (249)
++++||..+..+ ++++++|++|+++| ++
T Consensus 155 l~~~al~~~~~rd~~~~~~~~i~~i~~~g-~~ 185 (188)
T cd03762 155 FVKNALSLAMSRDGSSGGVIRLVIITKDG-VE 185 (188)
T ss_pred HHHHHHHHHHHhccccCCCEEEEEECCCC-EE
Confidence 999999999985 57899999999998 44
No 34
>PF00227 Proteasome: Proteasome subunit; InterPro: IPR001353 ATP-dependent protease complexes are present in all three kingdoms of life, where they rid the cell of misfolded or damaged proteins and control the level of certain regulatory proteins. They include the proteasome in Eukaryotes, Archaea, and Actinomycetales and the HslVU (ClpQY, clpXP) complex in other eubacteria. Genes homologous to eubacterial HslV (ClpQ) and HslU (ClpY, clpX) have also been demonstrated in to be present in the genome of trypanosomatid protozoa []. The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). The prokaryotic ATP-dependent proteasome is coded for by the heat-shock locus VU (HslVU). It consists of HslV, the protease (MEROPS peptidase subfamily T1B), and HslU, IPR004491 from INTERPRO, the ATPase and chaperone belonging to the AAA/Clp/Hsp100 family. The crystal structure of Thermotoga maritima HslV has been determined to 2.1-A resolution. The structure of the dodecameric enzyme is well conserved compared to those from Escherichia coli and Haemophilus influenzae [, ]. This entry contains threonine peptidases and non-peptidase homologs belong to MEROPS peptidase family T1 (proteasome family, clan PB(T)). The family consists of the protease components of the archaeal and bacterial proteasomes and the alpha and beta subunits of the eukaryotic proteasome. ; GO: 0004298 threonine-type endopeptidase activity, 0051603 proteolysis involved in cellular protein catabolic process, 0005839 proteasome core complex; PDB: 3KRD_1 3H6F_M 2FHH_F 3HF9_F 2FHG_D 3HFA_B 3H6I_K 3MI0_A 3MFE_1 3MKA_F ....
Probab=100.00 E-value=4.1e-41 Score=278.67 Aligned_cols=183 Identities=40% Similarity=0.689 Sum_probs=172.3
Q ss_pred HccCCcEEEEEeCCEEEEEEeccCCc--ccccCCcccceEEecCCEEEEEecChhhHHHHHHHHHHHHHHhhhhcCCCCC
Q 025716 27 VRKGNAAVGVRGTDTIVLGVEKKSTV--KLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVT 104 (249)
Q Consensus 27 v~~G~t~igi~~~dgVvla~d~~~~~--~l~~~~~~~Ki~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~ 104 (249)
|++|+|+|||+++||||||+|++.+. .+..+.+.+|||+|++|++++++|..+|++.+.++++.++..|++.++.+++
T Consensus 1 v~~G~t~vgi~~~dgvvla~d~~~~~g~~~~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~ 80 (190)
T PF00227_consen 1 VNNGTTVVGIKGKDGVVLAADKRISYGSKLRSPNTVDKIFKINDNIIIGFSGLTADFQYLIRRLREEAQEYRFSYGRPIS 80 (190)
T ss_dssp HHTSBEEEEEEESSEEEEEEEEEEEETTEEEESSTSSSEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHSSGTC
T ss_pred CCCCeEEEEEEECCEEEEEEccccccccccccccccceeeeccCcceeeccccccchHHHHhhhcccchhhhhccCcccc
Confidence 57999999999999999999999884 4445555799999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhccCCCccceeEEEEEeeeCCCCCceEEEECCCCceecc-ceEeecCCchHHHHHHHhhhccCCc
Q 025716 105 VEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAW-KANATGRNSNSMREFLEKNYKETSG 183 (249)
Q Consensus 105 ~~~la~~ls~~~~~~t~~~~~rP~gv~~ivaG~d~~~~gp~Ly~iDp~G~~~~~-~~~aiG~g~~~a~~~Le~~~~~~~s 183 (249)
++.+++.++..++.++++.++||++|++|++|||+ +++|+||.+||+|++.++ +++++|+|+..++++|++.|+++|+
T Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~p~~~~~li~G~d~-~~~~~l~~vd~~G~~~~~~~~~aiG~g~~~~~~~l~~~~~~~~~ 159 (190)
T PF00227_consen 81 PEYLAKAIASLIQNYTYRSGRRPYGVSLLIAGYDE-DGGPQLYSVDPSGSYIECKRFAAIGSGSQFAQPILEKLYKPDLS 159 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTSTTSEEEEEEEEET-TTEEEEEEEETTSEEEEBSSEEEESTTHHHHHHHHHHHHTTTSS
T ss_pred chhhhhhhHHHHhhhcccccccCccccceeeeecc-ccccceeeeccccccccccccccchhcchhhhHHHHhhccCCCC
Confidence 99999999999999999999999999999999997 677999999999999999 6999999999999999999999999
Q ss_pred -HHHHHHHHHHHHHHHhc---CCCcEEEEEE
Q 025716 184 -QETIKLAIRALLEVVES---GGKNIEVAVM 210 (249)
Q Consensus 184 -eeai~la~~~l~~~~~~---~~~~iei~~v 210 (249)
+||++++++||+.+.++ ++++++|++|
T Consensus 160 ~~ea~~~~~~~l~~~~~~d~~~~~~~~v~vi 190 (190)
T PF00227_consen 160 LEEAIELALKALKEAIDRDILSGDNIEVAVI 190 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHBTTSTSEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhhCCccCCeEEEEEC
Confidence 99999999999999874 5889999986
No 35
>cd01912 proteasome_beta proteasome beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.5e-40 Score=275.51 Aligned_cols=182 Identities=26% Similarity=0.425 Sum_probs=171.1
Q ss_pred CcEEEEEeCCEEEEEEeccCCccccc-CCcccceEEecCCEEEEEecChhhHHHHHHHHHHHHHHhhhhcCCCCCHHHHH
Q 025716 31 NAAVGVRGTDTIVLGVEKKSTVKLQD-SRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYIT 109 (249)
Q Consensus 31 ~t~igi~~~dgVvla~d~~~~~~l~~-~~~~~Ki~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la 109 (249)
+|+|||+++||||||+|++.++++.. +++.+|||+|+++++++++|+.+|++.+.++++.++..|++.++++++++.++
T Consensus 1 tt~i~i~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (189)
T cd01912 1 TTIVGIKGKDGVVLAADTRASAGSLVASRNFDKIFKISDNILLGTAGSAADTQALTRLLKRNLRLYELRNGRELSVKAAA 80 (189)
T ss_pred CcEEEEEeCCEEEEEEcCCcccCcEEEcCCcCcEEEccCCEEEEccccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 58999999999999999999987654 78899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhccCCCccceeEEEEEeeeCCCCCceEEEECCCCceeccceEeecCCchHHHHHHHhhhccCCc-HHHHH
Q 025716 110 RYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKETSG-QETIK 188 (249)
Q Consensus 110 ~~ls~~~~~~t~~~~~rP~gv~~ivaG~d~~~~gp~Ly~iDp~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s-eeai~ 188 (249)
++++++++.+++ |||+|++||||+|+ +++|+||.+||+|++.+++++++|.++..++++|++.|+++|+ +||++
T Consensus 81 ~~l~~~~~~~~~----~P~~~~~iv~G~d~-~~~~~l~~id~~G~~~~~~~~a~G~~~~~~~~~Le~~~~~~~s~~ea~~ 155 (189)
T cd01912 81 NLLSNILYSYRG----FPYYVSLIVGGVDK-GGGPFLYYVDPLGSLIEAPFVATGSGSKYAYGILDRGYKPDMTLEEAVE 155 (189)
T ss_pred HHHHHHHHhcCC----CCeEEEEEEEEEcC-CCCeEEEEECCCCCeEecCEEEEcccHHHHHHHHHhccCCCCCHHHHHH
Confidence 999999987764 89999999999996 5899999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHhc---CCCcEEEEEEEcCCCEEE
Q 025716 189 LAIRALLEVVES---GGKNIEVAVMTREKGLKQ 218 (249)
Q Consensus 189 la~~~l~~~~~~---~~~~iei~~v~~~g~~~~ 218 (249)
++++||+.+.++ ++.+++|++|+++| ++.
T Consensus 156 ~~~~~l~~~~~~d~~~~~~~~v~vi~~~g-~~~ 187 (189)
T cd01912 156 LVKKAIDSAIERDLSSGGGVDVAVITKDG-VEE 187 (189)
T ss_pred HHHHHHHHHHHhcCccCCcEEEEEECCCC-EEE
Confidence 999999998874 57899999999998 543
No 36
>cd01906 proteasome_protease_HslV proteasome_protease_HslV. This group contains the eukaryotic proteosome alpha and beta subunits and the prokaryotic protease hslV subunit. Proteasomes are large multimeric self-compartmentalizing proteases, involved in the clearance of misfolded proteins, the breakdown of regulatory proteins, and the processing of proteins such as the preparation of peptides for immune presentation. Two main proteasomal types are distinguished by their different tertiary structures: the eukaryotic/archeal 20S proteasome and the prokaryotic proteasome-like heat shock protein encoded by heat shock locus V, hslV. The proteasome core particle is a highly conserved cylindrical structure made up of non-identical subunits that have their active sites on the inner walls of a large central cavity. The proteasome subunits of bacteria, archaea, and eukaryotes all share a conserved Ntn (N terminal nucleophile) hydrolase fold and a catalytic mechanism involving an N-terminal nucleo
Probab=100.00 E-value=1.6e-39 Score=267.37 Aligned_cols=177 Identities=44% Similarity=0.680 Sum_probs=167.0
Q ss_pred CcEEEEEeCCEEEEEEeccCCccccc-CCcccceEEecCCEEEEEecChhhHHHHHHHHHHHHHHhhhhcCCCCCHHHHH
Q 025716 31 NAAVGVRGTDTIVLGVEKKSTVKLQD-SRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYIT 109 (249)
Q Consensus 31 ~t~igi~~~dgVvla~d~~~~~~l~~-~~~~~Ki~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la 109 (249)
+|+|||+++||||||+|++.++.+.. +++.+|||.|+++++++++|..+|++.+.+.++.++..|++.++++++++.++
T Consensus 1 tt~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (182)
T cd01906 1 TTIVGIKGKDGVVLAADKRVTSGLLVASSTVEKIFKIDDHIGCAFAGLAADAQTLVERLRKEAQLYRLRYGEPIPVEALA 80 (182)
T ss_pred CcEEEEEeCCEEEEEEecccCCcCeecCCCcceEEEECCCEEEEEeeCHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 58999999999999999999886544 77899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhccCCCccceeEEEEEeeeCCCCCceEEEECCCCceeccceEeecCCchHHHHHHHhhhccCCc-HHHHH
Q 025716 110 RYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKETSG-QETIK 188 (249)
Q Consensus 110 ~~ls~~~~~~t~~~~~rP~gv~~ivaG~d~~~~gp~Ly~iDp~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s-eeai~ 188 (249)
+++++++|.+++. .|||++++|++|+|+ +++|+||.+||+|++.+++++++|+++..++++|++.|+++|+ +|+++
T Consensus 81 ~~l~~~~~~~~~~--~~p~~~~~lv~G~d~-~~~~~Ly~id~~G~~~~~~~~a~G~g~~~~~~~L~~~~~~~~s~~ea~~ 157 (182)
T cd01906 81 KLLANLLYEYTQS--LRPLGVSLLVAGVDE-EGGPQLYSVDPSGSYIEYKATAIGSGSQYALGILEKLYKPDMTLEEAIE 157 (182)
T ss_pred HHHHHHHHHhCCC--ccChheEEEEEEEeC-CCCcEEEEECCCCCEeeccEEEECCCcHHHHHHHHHHccCCCCHHHHHH
Confidence 9999999999876 799999999999996 5899999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHhc---CCCcEEEEEE
Q 025716 189 LAIRALLEVVES---GGKNIEVAVM 210 (249)
Q Consensus 189 la~~~l~~~~~~---~~~~iei~~v 210 (249)
++++||..+.++ .+.+++|+++
T Consensus 158 l~~~~l~~~~~~~~~~~~~~~i~ii 182 (182)
T cd01906 158 LALKALKSALERDLYSGGNIEVAVI 182 (182)
T ss_pred HHHHHHHHHHcccCCCCCCEEEEEC
Confidence 999999999875 4678999875
No 37
>KOG0177 consensus 20S proteasome, regulatory subunit beta type PSMB2/PRE1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3e-37 Score=246.06 Aligned_cols=187 Identities=20% Similarity=0.316 Sum_probs=175.1
Q ss_pred CCcEEEEEeCCEEEEEEeccCCcc-cccCCcccceEEecCCEEEEEecChhhHHHHHHHHHHHHHHhhhhcCCCCCHHHH
Q 025716 30 GNAAVGVRGTDTIVLGVEKKSTVK-LQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYI 108 (249)
Q Consensus 30 G~t~igi~~~dgVvla~d~~~~~~-l~~~~~~~Ki~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l 108 (249)
+.+++||++.|+|++|+|+..... ++.+++.+|++++++++.|+++|..+|+.++.+++.+.++.|+.++|.++||+..
T Consensus 1 Me~llGIkg~dfvilAsDt~~~~si~~~k~~~dK~~~ls~~~lm~~~Ge~GDt~qF~eyi~~Ni~LYkirnGyeLSp~~a 80 (200)
T KOG0177|consen 1 METLLGIKGPDFVILASDTSAARSILVLKDDHDKIHRLSDHILMATVGEAGDTVQFTEYIQKNIQLYKIRNGYELSPSAA 80 (200)
T ss_pred CceEEEeecCCEEEEeecchhhcceEEecccccceEEeccceeeeeecCCCceehHHHHHHhhhhHHhhhcCCcCCHHHH
Confidence 467999999999999999987664 5678899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhccCCCccceeEEEEEeeeCCCCCceEEEECCCCceeccceEeecCCchHHHHHHHhhhccCCc-HHHH
Q 025716 109 TRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKETSG-QETI 187 (249)
Q Consensus 109 a~~ls~~~~~~t~~~~~rP~gv~~ivaG~d~~~~gp~Ly~iDp~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s-eeai 187 (249)
|+++++.+..+.++ .+||-|++|+||+|+ +.||.||++|..|+..+.++++.|.++.++.++|++.|+|+|| +||+
T Consensus 81 ahFtR~~La~~LRs--r~~yqV~~LvaGYd~-~~gp~L~~iDyla~~~~vpy~~hGy~~~f~~sIlDr~Y~pdmt~eea~ 157 (200)
T KOG0177|consen 81 AHFTRRELAESLRS--RTPYQVNILVAGYDP-EEGPELYYIDYLATLVSVPYAAHGYGSYFCLSILDRYYKPDMTIEEAL 157 (200)
T ss_pred HHHHHHHHHHHHhc--CCCceEEEEEeccCC-CCCCceeeehhhhhcccCCcccccchhhhhHHHHHhhhCCCCCHHHHH
Confidence 99999999999863 489999999999999 7789999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHHhc---CCCcEEEEEEEcCCCEEEcC
Q 025716 188 KLAIRALLEVVES---GGKNIEVAVMTREKGLKQLD 220 (249)
Q Consensus 188 ~la~~~l~~~~~~---~~~~iei~~v~~~g~~~~~~ 220 (249)
.+..+|+.++.++ +..+|.|.+|+||| .+.++
T Consensus 158 ~lmkKCv~El~kRlvin~~~f~v~IVdkdG-ir~~~ 192 (200)
T KOG0177|consen 158 DLMKKCVLELKKRLVINLPGFIVKIVDKDG-IRKLD 192 (200)
T ss_pred HHHHHHHHHHHHhcccCCCCcEEEEEcCCC-ceecc
Confidence 9999999998765 78899999999999 66554
No 38
>KOG0179 consensus 20S proteasome, regulatory subunit beta type PSMB1/PRE7 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.9e-32 Score=217.48 Aligned_cols=182 Identities=19% Similarity=0.385 Sum_probs=169.8
Q ss_pred ccCCcEEEEEeCCEEEEEEeccCCccc-ccCCcccceEEecCCEEEEEecChhhHHHHHHHHHHHHHHhhhhcCCCCCHH
Q 025716 28 RKGNAAVGVRGTDTIVLGVEKKSTVKL-QDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVE 106 (249)
Q Consensus 28 ~~G~t~igi~~~dgVvla~d~~~~~~l-~~~~~~~Ki~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~ 106 (249)
.||+|+|||.+.|+.|+|+|+|.++.+ +.+++.+|||+++|+++++.+|+.+|+..|...++...+.|+..++..|++.
T Consensus 27 ~NGGT~vaIaG~dFavvA~DTR~s~gy~I~sR~~~Ki~~l~D~~vl~~sGF~aD~l~L~k~i~~r~~~Y~~~h~k~ms~~ 106 (235)
T KOG0179|consen 27 DNGGTTVAIAGEDFAVVAGDTRMSSGYNINSRDQSKIFKLGDNIVLGSSGFYADTLALVKVIKSRIKQYEHDHNKKMSIH 106 (235)
T ss_pred cCCceEEEEcCCceEEEecccccccceeeeccccchheeccCceEEecccchhhHHHHHHHHHHHHHHHhhcccccccHH
Confidence 689999999999999999999998854 6789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhccCCCccceeEEEEEeeeCCCCCceEEEECCCCceeccceEeecCCchHHHHHHHhhhc-------
Q 025716 107 YITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYK------- 179 (249)
Q Consensus 107 ~la~~ls~~~~~~t~~~~~rP~gv~~ivaG~d~~~~gp~Ly~iDp~G~~~~~~~~aiG~g~~~a~~~Le~~~~------- 179 (249)
..|++|+.+++ . .++.||.+..||+|+|+ ++++.+|..||-|++.+..+.|.|+++..++++|+.+..
T Consensus 107 s~A~lls~~LY--~--kRFFPYYv~~ilaGiDe-eGKG~VySyDPvGsyer~~~~AgGsa~~mI~PfLDnQi~~kn~~~e 181 (235)
T KOG0179|consen 107 SAAQLLSTILY--S--KRFFPYYVFNILAGIDE-EGKGAVYSYDPVGSYERVTCRAGGSAASMIQPFLDNQIGHKNQNLE 181 (235)
T ss_pred HHHHHHHHHHh--h--cccccceeeeeeecccc-cCceeEEeecCCcceeeeeeecCCcchhhhhhhhhhhccCcCcccc
Confidence 99999999994 3 36789999999999997 789999999999999999999999999999999998643
Q ss_pred ----cCCc-HHHHHHHHHHHHHHHhc---CCCcEEEEEEEcCC
Q 025716 180 ----ETSG-QETIKLAIRALLEVVES---GGKNIEVAVMTREK 214 (249)
Q Consensus 180 ----~~~s-eeai~la~~~l~~~~~~---~~~~iei~~v~~~g 214 (249)
..|+ |+|++++..++..+.++ .+++++|+|++++|
T Consensus 182 ~~~~~~Ls~e~ai~lv~d~F~SAaERdI~tGD~l~i~I~tk~g 224 (235)
T KOG0179|consen 182 NAERTPLSLERAIRLVKDAFTSAAERDIYTGDKLEICIITKDG 224 (235)
T ss_pred cCcccccCHHHHHHHHHHHhhhhhhcccccCCcEEEEEEecCC
Confidence 3578 99999999999999886 58899999999998
No 39
>KOG0175 consensus 20S proteasome, regulatory subunit beta type PSMB5/PSMB8/PRE2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.1e-32 Score=226.40 Aligned_cols=201 Identities=17% Similarity=0.318 Sum_probs=186.4
Q ss_pred HccCCcEEEEEeCCEEEEEEeccCCc-ccccCCcccceEEecCCEEEEEecChhhHHHHHHHHHHHHHHhhhhcCCCCCH
Q 025716 27 VRKGNAAVGVRGTDTIVLGVEKKSTV-KLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTV 105 (249)
Q Consensus 27 v~~G~t~igi~~~dgVvla~d~~~~~-~l~~~~~~~Ki~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~ 105 (249)
..+|||.+|++++.|||+|+|+|.+. .++.+...+||.+|+++..-+.+|-++|+++.-+.+.++|++|++++++-|+|
T Consensus 68 ~~hGTTTLAF~f~~GvivAvDSRAs~G~YIasqtv~KVIeIn~ylLGTmAGgAADCqfWer~L~kecRL~eLRnkeriSV 147 (285)
T KOG0175|consen 68 FAHGTTTLAFKFKGGVIVAVDSRASAGSYIASQTVKKVIEINPYLLGTMAGGAADCQFWERVLAKECRLHELRNKERISV 147 (285)
T ss_pred ecCCceEEEEEecCcEEEEEeccccccceeechhhceeeeechhhhhcccCcchhhHHHHHHHHHHHHHHHHhcCcceeh
Confidence 36899999999999999999999998 57788899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhccCCCccceeEEEEEeeeCCCCCceEEEECCCCceeccceEeecCCchHHHHHHHhhhccCCc-H
Q 025716 106 EYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKETSG-Q 184 (249)
Q Consensus 106 ~~la~~ls~~~~~~t~~~~~rP~gv~~ivaG~d~~~~gp~Ly~iDp~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s-e 184 (249)
...++.|+++++.|... -+.+.++||||| +.||.||++|..|+...-+-.++|+|+.+|.+.|+..|+++|+ +
T Consensus 148 saASKllsN~~y~YkGm----GLsmGtMi~G~D--k~GP~lyYVDseG~Rl~G~~FSVGSGs~yAYGVLDsgYr~dls~e 221 (285)
T KOG0175|consen 148 SAASKLLSNMVYQYKGM----GLSMGTMIAGWD--KKGPGLYYVDSEGTRLSGDLFSVGSGSTYAYGVLDSGYRYDLSDE 221 (285)
T ss_pred HHHHHHHHHHHhhccCc----chhheeeEeecc--CCCCceEEEcCCCCEecCceEeecCCCceeEEeeccCCCCCCCHH
Confidence 99999999999887643 377888999999 6899999999999999999999999999999999999999999 9
Q ss_pred HHHHHHHHHHHHHHhc---CCCcEEEEEEEcCCCEEEcCHHHHHHHHHHHHHH
Q 025716 185 ETIKLAIRALLEVVES---GGKNIEVAVMTREKGLKQLDEAEIDAMVAEIEAK 234 (249)
Q Consensus 185 eai~la~~~l~~~~~~---~~~~iei~~v~~~g~~~~~~~~ei~~~l~~i~~~ 234 (249)
||.+|+++++..+..+ ++..+.++.|+++| +..++..++.++..++.+.
T Consensus 222 EA~~L~rrAI~hAThRDaySGG~vnlyHv~edG-W~~v~~~Dv~~L~~~~~e~ 273 (285)
T KOG0175|consen 222 EAYDLARRAIYHATHRDAYSGGVVNLYHVKEDG-WVKVSNTDVSELHYHYYEV 273 (285)
T ss_pred HHHHHHHHHHHHHHhcccccCceEEEEEECCcc-ceecCCccHHHHHHHHHHh
Confidence 9999999999988755 47789999999999 9999999999997777653
No 40
>KOG0173 consensus 20S proteasome, regulatory subunit beta type PSMB7/PSMB10/PUP1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=4e-31 Score=219.33 Aligned_cols=182 Identities=25% Similarity=0.359 Sum_probs=167.5
Q ss_pred HHccCCcEEEEEeCCEEEEEEeccCCc-ccccCCcccceEEecCCEEEEEecChhhHHHHHHHHHHHHHHhhhhcCCCCC
Q 025716 26 AVRKGNAAVGVRGTDTIVLGVEKKSTV-KLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVT 104 (249)
Q Consensus 26 av~~G~t~igi~~~dgVvla~d~~~~~-~l~~~~~~~Ki~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~ 104 (249)
+.+.|+|++|+.++||||+++|+|.+. .++..++.+||+.|.++|+||.+|..+|...+.+-+..+.++|.++.++.+.
T Consensus 33 ~tkTGTtIvgv~~k~gvIlgADtRaT~G~IvaDKnC~KIH~ia~~IyccGAGtAADte~vt~m~ss~l~Lh~l~t~R~~r 112 (271)
T KOG0173|consen 33 ATKTGTTIVGVIFKDGVILGADTRATEGPIVADKNCEKIHFIAPNIYCCGAGTAADTEMVTRMISSNLELHRLNTGRKPR 112 (271)
T ss_pred ccccCcEEEEEEeCCeEEEeecccccCCCeeecchhHHHhhcccceEEccCCchhhHHHHHHHHHHHHHHHHhccCCCCc
Confidence 346799999999999999999999998 5667789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhccCCCccceeEEEEEeeeCCCCCceEEEECCCCceeccceEeecCCchHHHHHHHhhhccCCc-
Q 025716 105 VEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKETSG- 183 (249)
Q Consensus 105 ~~~la~~ls~~~~~~t~~~~~rP~gv~~ivaG~d~~~~gp~Ly~iDp~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s- 183 (249)
+-..-+++.+.+..|.. -.|+.+||+|+| ..|||||.+-|.|+...-+|.++|+|+..++++||.+|+++|+
T Consensus 113 Vv~A~~mlkQ~LFrYqG-----~IgA~LiiGGvD--~TGpHLy~i~phGStd~~Pf~alGSGslaAmsvlEsr~k~dlt~ 185 (271)
T KOG0173|consen 113 VVTALRMLKQHLFRYQG-----HIGAALILGGVD--PTGPHLYSIHPHGSTDKLPFTALGSGSLAAMSVLESRWKPDLTK 185 (271)
T ss_pred eeeHHHHHHHHHHHhcC-----cccceeEEcccc--CCCCceEEEcCCCCcCccceeeeccchHHHHHHHHHhcCcccCH
Confidence 99888899998877653 478999999999 5899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhc---CCCcEEEEEEEcCC
Q 025716 184 QETIKLAIRALLEVVES---GGKNIEVAVMTREK 214 (249)
Q Consensus 184 eeai~la~~~l~~~~~~---~~~~iei~~v~~~g 214 (249)
|||++|+.+|+..-+-- ++.|+++++|++.+
T Consensus 186 eea~~Lv~eAi~AGi~nDLgSGsnvdlcVI~~~~ 219 (271)
T KOG0173|consen 186 EEAIKLVCEAIAAGIFNDLGSGSNVDLCVITKKG 219 (271)
T ss_pred HHHHHHHHHHHHhhhccccCCCCceeEEEEeCCC
Confidence 99999999999987632 57899999999764
No 41
>KOG0174 consensus 20S proteasome, regulatory subunit beta type PSMB6/PSMB9/PRE3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=3.1e-31 Score=212.33 Aligned_cols=197 Identities=15% Similarity=0.277 Sum_probs=178.4
Q ss_pred HHccCCcEEEEEeCCEEEEEEeccCCc-ccccCCcccceEEecCCEEEEEecChhhHHHHHHHHHHHHHHhhhhcCCCCC
Q 025716 26 AVRKGNAAVGVRGTDTIVLGVEKKSTV-KLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVT 104 (249)
Q Consensus 26 av~~G~t~igi~~~dgVvla~d~~~~~-~l~~~~~~~Ki~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~ 104 (249)
.+..|+|++|+++++||||++|.|.+. .++.++-.+|+.+|.|||+||-||..+|.|.+.+.++..+..|..+++.+++
T Consensus 15 evstGTTImAv~y~gGVvlGaDSRTs~GayvanRvtDKlT~itD~i~cCRSGSAADtQaiaD~~~Y~L~~~~~q~~~~p~ 94 (224)
T KOG0174|consen 15 EVSTGTTIMAVEYDGGVVLGADSRTSTGAYVANRVTDKLTPITDNIYCCRSGSAADTQAIADIVRYHLELYTIQENKPPL 94 (224)
T ss_pred ccccCceEEEEEEcCcEEEeccCCccchHHHHhhhcccceeccccEEEecCCchhhHHHHHHHHHHHHHHhhhhcCCCch
Confidence 467999999999999999999999988 4677888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhccCCCccceeEEEEEeeeCCCCCceEEEECCCCceeccceEeecCCchHHHHHHHhhhccCCc-
Q 025716 105 VEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKETSG- 183 (249)
Q Consensus 105 ~~~la~~ls~~~~~~t~~~~~rP~gv~~ivaG~d~~~~gp~Ly~iDp~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s- 183 (249)
+...|+.++++.++|.. -+.+.+||||||+ +.|.++|.+.-.|+..+-++..-|+|+.+++++++.+|+++|+
T Consensus 95 v~~aA~l~r~~~Y~~re-----~L~AgliVAGwD~-~~gGqVY~iplGG~l~rq~~aIgGSGStfIYGf~D~~~r~nMt~ 168 (224)
T KOG0174|consen 95 VHTAASLFREICYNYRE-----MLSAGLIVAGWDE-KEGGQVYSIPLGGSLTRQPFAIGGSGSTFIYGFCDANWRPNMTL 168 (224)
T ss_pred HHHHHHHHHHHHHhCHH-----hhhcceEEeeccc-ccCceEEEeecCceEeecceeeccCCceeeeeeehhhcCCCCCH
Confidence 99999999999976642 3778999999998 8899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhc---CCCcEEEEEEEcCCCE-EEcCHHHHHHHH
Q 025716 184 QETIKLAIRALLEVVES---GGKNIEVAVMTREKGL-KQLDEAEIDAMV 228 (249)
Q Consensus 184 eeai~la~~~l~~~~~~---~~~~iei~~v~~~g~~-~~~~~~ei~~~l 228 (249)
||++.+.++|+.-++.+ ++..|.+.+|+++|.- +.+.++++.++.
T Consensus 169 EE~~~fvk~Av~lAi~rDGsSGGviR~~~I~~~Gver~~~~~d~~~~~~ 217 (224)
T KOG0174|consen 169 EECVRFVKNAVSLAIERDGSSGGVIRLVIINKAGVERRFFPGDKLGQFA 217 (224)
T ss_pred HHHHHHHHHHHHHHHhccCCCCCEEEEEEEccCCceEEEecCCcccccc
Confidence 99999999999999876 4678999999999933 356677665543
No 42
>KOG0185 consensus 20S proteasome, regulatory subunit beta type PSMB4/PRE4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=6.4e-31 Score=216.10 Aligned_cols=212 Identities=18% Similarity=0.255 Sum_probs=184.0
Q ss_pred CcccCCCCcchhhhhHHH--------HHccCCcEEEEEeCCEEEEEEeccCCc-ccccCCcccceEEecCCEEEEEecCh
Q 025716 8 ITVFSPDGHLFQVEYALE--------AVRKGNAAVGVRGTDTIVLGVEKKSTV-KLQDSRSVRKIVSLDNHIALACAGLK 78 (249)
Q Consensus 8 ~~~fsp~G~l~Qveya~k--------av~~G~t~igi~~~dgVvla~d~~~~~-~l~~~~~~~Ki~~I~~~i~~~~sG~~ 78 (249)
.++|.|.|.. ++-|.. ++-.|++|||+|++||||+|+|+..+. .+...++.+|+++++||+.+++||..
T Consensus 13 ~~~f~~~~~~--m~~a~~~~~qrt~~p~vTGTSVla~ky~~GVviaaD~lgSYGslaR~~nVeRi~kVgdntllG~sGdi 90 (256)
T KOG0185|consen 13 PGTFYPSGSL--MENAGDYPIQRTLNPIVTGTSVLALKYKDGVVIAADTLGSYGSLARYKNVERIFKVGDNTLLGASGDI 90 (256)
T ss_pred CCcCcCccch--hhhccCCCcccccCceeccceEEEEEecCceEEEecccccchhhhhhcCceeeEEecCceEEecCccH
Confidence 5678888653 344433 344799999999999999999999988 67777899999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHhh-hhcCCCCCHHHHHHHHHHHHHhhhccCCCccceeEEEEEeeeCCCCCceEEEECCCCceec
Q 025716 79 ADARVLINRARIECQSHR-LTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSA 157 (249)
Q Consensus 79 ~D~~~l~~~~~~~~~~~~-~~~~~~i~~~~la~~ls~~~~~~t~~~~~rP~gv~~ivaG~d~~~~gp~Ly~iDp~G~~~~ 157 (249)
+|.|.|.+.+.....+.+ +--|+.+.|+.++.+|++.+ |.+++.+.|+...++|+|+|. ++.|.|-.+|-.|...+
T Consensus 91 sD~Q~i~r~L~~l~iedn~~~Dg~~l~Pk~ih~yltrvl--Y~rRsKmnPlwntlvVgGv~~-~g~~~lg~V~~~G~~Y~ 167 (256)
T KOG0185|consen 91 SDFQYIQRVLEQLVIEDNRLDDGQSLGPKAIHSYLTRVL--YARRSKMNPLWNTLVVGGVDN-TGEPFLGYVDLLGVAYE 167 (256)
T ss_pred HHHHHHHHHHHHHHhcccccccccccChHHHHHHHHHHH--HHhhhccCchhhheeEeeecC-CCCeeEEEEeecccccc
Confidence 999999999988776643 44569999999999999999 667889999999999999996 68899999999999999
Q ss_pred cceEeecCCchHHHHHHHhhhc---cCCc-HHHHHHHHHHHHHHHhc---CCCcEEEEEEEcCCCEEEcCHHHHH
Q 025716 158 WKANATGRNSNSMREFLEKNYK---ETSG-QETIKLAIRALLEVVES---GGKNIEVAVMTREKGLKQLDEAEID 225 (249)
Q Consensus 158 ~~~~aiG~g~~~a~~~Le~~~~---~~~s-eeai~la~~~l~~~~~~---~~~~iei~~v~~~g~~~~~~~~ei~ 225 (249)
.+..|+|.|..+|.++|++.|. ++++ +||..++.+|++.++.+ +.++|+|++|+++| +..-.|.+|+
T Consensus 168 ~~~vATGfg~hLa~P~lR~~~~~k~~~~s~eeA~~li~~cMrVL~YRD~ra~n~fqva~v~~eG-v~i~~p~qv~ 241 (256)
T KOG0185|consen 168 SPVVATGFGAHLALPLLRDEWEKKGEDLSREEAEALIEKCMRVLYYRDARASNEFQVATVDEEG-VTISKPYQVK 241 (256)
T ss_pred CchhhhhhHHHhhhHHHHHhhhccchhhHHHHHHHHHHHHHHHHhccccccccceEEEEEcccc-eEecCceeee
Confidence 9999999999999999999997 4678 99999999999999876 46689999999988 6665555443
No 43
>PRK05456 ATP-dependent protease subunit HslV; Provisional
Probab=99.97 E-value=2.8e-29 Score=204.55 Aligned_cols=163 Identities=16% Similarity=0.153 Sum_probs=138.0
Q ss_pred CCcEEEEEeCCEEEEEEeccCCc-ccccCCcccceEEe-cCCEEEEEecChhhHHHHHHHHHHHHHHhhhhcCCCCCHHH
Q 025716 30 GNAAVGVRGTDTIVLGVEKKSTV-KLQDSRSVRKIVSL-DNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEY 107 (249)
Q Consensus 30 G~t~igi~~~dgVvla~d~~~~~-~l~~~~~~~Ki~~I-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~ 107 (249)
|+|+|||+++||||||+|+|.+. .++.+++.+||++| ++|++|+++|..+|++.|.+.++.+++.|+. +. ++.
T Consensus 1 gtTivgi~~~dgVvlaaD~r~s~g~~v~~~~~~KI~~i~~d~i~~~~aG~~aD~q~l~~~l~~~~~~y~~--~~---~~~ 75 (172)
T PRK05456 1 GTTILAVRRNGKVAIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEEHQG--NL---LRA 75 (172)
T ss_pred CcEEEEEEECCEEEEEECCceEeCcEEEcCCCceEEEeCCCCEEEEEeccHHHHHHHHHHHHHHHHHccC--cc---HHH
Confidence 78999999999999999999987 56778899999999 9999999999999999999999999999983 22 355
Q ss_pred HHHHHHHHHHhhhccCCCccceeEEEEEeeeCCCCCceEEEECCCCceecc--ceEeecCCchHHHHHHHhhhc-cCCcH
Q 025716 108 ITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAW--KANATGRNSNSMREFLEKNYK-ETSGQ 184 (249)
Q Consensus 108 la~~ls~~~~~~t~~~~~rP~gv~~ivaG~d~~~~gp~Ly~iDp~G~~~~~--~~~aiG~g~~~a~~~Le~~~~-~~~se 184 (249)
.++.+..+. .....+|+.+.+|++ | .|+||.+||.|++.+. +++++|+|+.++.++|++.|+ ++|
T Consensus 76 ~a~l~~~l~----~~~~~~~l~~~~lv~--d----~~~ly~id~~G~~~~~~~~~~a~GSGs~~a~g~ld~~y~~~~m-- 143 (172)
T PRK05456 76 AVELAKDWR----TDRYLRRLEAMLIVA--D----KEHSLIISGNGDVIEPEDGIIAIGSGGNYALAAARALLENTDL-- 143 (172)
T ss_pred HHHHHHHHH----hccCCCccEEEEEEE--c----CCcEEEECCCCcEeccCCCeEEEecCHHHHHHHHHHhhhcCCC--
Confidence 554443321 122346888999984 5 2699999999999766 899999999999999999999 999
Q ss_pred HHHHHHHHHHHHHHhc---CCCcEEEEE
Q 025716 185 ETIKLAIRALLEVVES---GGKNIEVAV 209 (249)
Q Consensus 185 eai~la~~~l~~~~~~---~~~~iei~~ 209 (249)
||++++++|+.++..+ ++++|+|-.
T Consensus 144 eA~~la~kai~~A~~Rd~~sg~~i~v~~ 171 (172)
T PRK05456 144 SAEEIAEKALKIAADICIYTNHNITIEE 171 (172)
T ss_pred CHHHHHHHHHHHHHHhCeeCCCcEEEEE
Confidence 9999999999999876 466777653
No 44
>cd01901 Ntn_hydrolase The Ntn hydrolases (N-terminal nucleophile) are a diverse superfamily of of enzymes that are activated autocatalytically via an N-terminally lcated nucleophilic amino acid. N-terminal nucleophile (NTN-) hydrolase superfamily, which contains a four-layered alpha, beta, beta, alpha core structure. This family of hydrolases includes penicillin acylase, the 20S proteasome alpha and beta subunits, and glutamate synthase. The mechanism of activation of these proteins is conserved, although they differ in their substrate specificities. All known members catalyze the hydrolysis of amide bonds in either proteins or small molecules, and each one of them is synthesized as a preprotein. For each, an autocatalytic endoproteolytic process generates a new N-terminal residue. This mature N-terminal residue is central to catalysis and acts as both a polarizing base and a nucleophile during the reaction. The N-terminal amino group acts as the proton acceptor and activates either t
Probab=99.97 E-value=8e-29 Score=198.07 Aligned_cols=160 Identities=37% Similarity=0.529 Sum_probs=152.1
Q ss_pred CcEEEEEeCCEEEEEEeccCCccccc-CCcccceEEecCCEEEEEecChhhHHHHHHHHHHHHHHhhhhcCCCCCHHHHH
Q 025716 31 NAAVGVRGTDTIVLGVEKKSTVKLQD-SRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYIT 109 (249)
Q Consensus 31 ~t~igi~~~dgVvla~d~~~~~~l~~-~~~~~Ki~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la 109 (249)
+|+|||+++||||+|+|++.+..+.. .....|++.++++++++++|..+|++.+.++++.++..|++.++.++++..++
T Consensus 1 ~t~i~i~~~~gvila~d~~~~~~~~~~~~~~~ki~~~~~~~~~~~sG~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (164)
T cd01901 1 STSVAIKGKGGVVLAADKRLSSGLPVAGSPVIKIGKNEDGIAWGLAGLAADAQTLVRRLREALQLYRLRYGEPISVVALA 80 (164)
T ss_pred CcEEEEEeCCEEEEEEecccCccCeecCCCcceEEEecCCeEEEEecChHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 57999999999999999999886544 66899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhccCCCccceeEEEEEeeeCCCCCceEEEECCCCceecc-ceEeecCCchHHHHHHHhhhccCCc-HHHH
Q 025716 110 RYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAW-KANATGRNSNSMREFLEKNYKETSG-QETI 187 (249)
Q Consensus 110 ~~ls~~~~~~t~~~~~rP~gv~~ivaG~d~~~~gp~Ly~iDp~G~~~~~-~~~aiG~g~~~a~~~Le~~~~~~~s-eeai 187 (249)
+.+++.++.+++ .||+++++|++|+|+ ++|+||.+||.|++..+ +++++|.++..+.++|++.|+++|+ +|++
T Consensus 81 ~~~~~~~~~~~~---~~p~~~~~iiag~~~--~~~~l~~id~~g~~~~~~~~~~~G~~~~~~~~~l~~~~~~~~~~~~~~ 155 (164)
T cd01901 81 KELAKLLQVYTQ---GRPFGVNLIVAGVDE--GGGNLYYIDPSGPVIENPGAVATGSRSQRAKSLLEKLYKPDMTLEEAV 155 (164)
T ss_pred HHHHHHHHHhcC---CCCcceEEEEEEEcC--CCCEEEEECCCcCEeecCcEEEECCCCHHHHHHHHHHhcCCCCHHHHH
Confidence 999999998887 699999999999994 78999999999999999 9999999999999999999999999 9999
Q ss_pred HHHHHHHH
Q 025716 188 KLAIRALL 195 (249)
Q Consensus 188 ~la~~~l~ 195 (249)
+++.+||.
T Consensus 156 ~~~~~~l~ 163 (164)
T cd01901 156 ELALKALK 163 (164)
T ss_pred HHHHHHHh
Confidence 99999985
No 45
>KOG0180 consensus 20S proteasome, regulatory subunit beta type PSMB3/PUP3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=4.2e-28 Score=191.00 Aligned_cols=182 Identities=21% Similarity=0.325 Sum_probs=170.0
Q ss_pred ccCCcEEEEEeCCEEEEEEeccCCcc-cccCCcccceEEecCCEEEEEecChhhHHHHHHHHHHHHHHhhhhcCCCCCHH
Q 025716 28 RKGNAAVGVRGTDTIVLGVEKKSTVK-LQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVE 106 (249)
Q Consensus 28 ~~G~t~igi~~~dgVvla~d~~~~~~-l~~~~~~~Ki~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~ 106 (249)
-+|+++||.+++|||.+|+|.|.... ...+++.+|||+|+|+++++.+|+..|++.+.++++..-+.|+++.++.|-|+
T Consensus 6 ynGg~vvAM~gk~cvaIa~D~RlG~q~~tistdf~ki~~igdr~y~GL~glatDvqtl~~~~~fr~nLy~lre~R~i~P~ 85 (204)
T KOG0180|consen 6 YNGGSVVAMAGKNCVAIASDLRLGVQSQTISTDFQKIFKIGDRLYLGLTGLATDVQTLLERLRFRKNLYELREEREIKPE 85 (204)
T ss_pred ecCceEEEEeCCceEEEEeccccceeeeeeeccchhheecCCeeEEeccccchhHHHHHHHHHHHHhHHHhhhhcccCcH
Confidence 48999999999999999999999874 34567899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhccCCCccceeEEEEEeeeCCCCCceEEEECCCCceec-cceEeecCCchHHHHHHHhhhccCCc-H
Q 025716 107 YITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSA-WKANATGRNSNSMREFLEKNYKETSG-Q 184 (249)
Q Consensus 107 ~la~~ls~~~~~~t~~~~~rP~gv~~ivaG~d~~~~gp~Ly~iDp~G~~~~-~~~~aiG~g~~~a~~~Le~~~~~~~s-e 184 (249)
.++.++|.++++. ++-||-+..+|||+|+ .++|+|..+|..|.... .++++.|.+++...+..|..|+|+|. +
T Consensus 86 ~~s~mvS~~lYek----RfgpYf~~PvVAGl~~-~~kPfIc~mD~IGc~~~~~DFVvsGTa~e~L~GmCE~ly~pnmepd 160 (204)
T KOG0180|consen 86 TFSSMVSSLLYEK----RFGPYFTEPVVAGLDD-DNKPFICGMDLIGCIDAPKDFVVSGTASEQLYGMCEALYEPNMEPD 160 (204)
T ss_pred HHHHHHHHHHHHh----hcCCcccceeEeccCC-CCCeeEeecccccCcCccCCeEEecchHHHHHHHHHHhcCCCCCHH
Confidence 9999999999653 4569999999999998 89999999999999965 59999999999999999999999999 9
Q ss_pred HHHHHHHHHHHHHHhc---CCCcEEEEEEEcCC
Q 025716 185 ETIKLAIRALLEVVES---GGKNIEVAVMTREK 214 (249)
Q Consensus 185 eai~la~~~l~~~~~~---~~~~iei~~v~~~g 214 (249)
++.+.+.++|.+++++ +++...|.+|++|.
T Consensus 161 ~LFetisQa~Lna~DRDalSGwGa~vyiI~kdk 193 (204)
T KOG0180|consen 161 ELFETISQALLNAVDRDALSGWGAVVYIITKDK 193 (204)
T ss_pred HHHHHHHHHHHhHhhhhhhccCCeEEEEEccch
Confidence 9999999999999987 58899999999987
No 46
>cd01913 protease_HslV Protease HslV and the ATPase/chaperone HslU are part of an ATP-dependent proteolytic system that is the prokaryotic homolog of the proteasome. HslV is a dimer of hexamers (a dodecamer) that forms a central proteolytic chamber with active sites on the interior walls of the cavity. HslV shares significant sequence and structural similarity with the proteasomal beta-subunit and both are members of the Ntn-family of hydrolases. HslV has a nucleophilic threonine residue at its N-terminus that is exposed after processing of the propeptide and is directly involved in active site catalysis.
Probab=99.96 E-value=1.3e-27 Score=193.65 Aligned_cols=161 Identities=16% Similarity=0.094 Sum_probs=132.7
Q ss_pred CcEEEEEeCCEEEEEEeccCCc-ccccCCcccceEEecC-CEEEEEecChhhHHHHHHHHHHHHHHhhhhcCCCCCHHHH
Q 025716 31 NAAVGVRGTDTIVLGVEKKSTV-KLQDSRSVRKIVSLDN-HIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYI 108 (249)
Q Consensus 31 ~t~igi~~~dgVvla~d~~~~~-~l~~~~~~~Ki~~I~~-~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l 108 (249)
+|+|||+++||||||+|+|.+. .++.+++.+||++|++ |++|+++|..+|++.|.++++.+++.|+.+.++ ..
T Consensus 1 tTivgi~~~dgVvlaaD~r~t~G~~v~~~~~~Ki~~i~d~~i~~~~aG~~aD~~~l~~~~~~~~~~y~~~~~~-----~a 75 (171)
T cd01913 1 TTILAVRKNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVIAGFAGSTADAFTLFERFEAKLEQYPGNLLR-----AA 75 (171)
T ss_pred CeEEEEEECCEEEEEECCceEeccEEEcCCcceEEEeCCCCEEEEecccHHHHHHHHHHHHHHHHHhhchHHH-----HH
Confidence 6899999999999999999987 5678889999999999 999999999999999999999999999988774 33
Q ss_pred HHHHHHHHHhhhccCCCccce-eEEEEEeeeCCCCCceEEEECCCCceecc--ceEeecCCchHHHHHHHhhhccC-CcH
Q 025716 109 TRYIAGLQQKYTQSGGVRPFG-LSTLIVGFDPYTGVPSLYQTDPSGTFSAW--KANATGRNSNSMREFLEKNYKET-SGQ 184 (249)
Q Consensus 109 a~~ls~~~~~~t~~~~~rP~g-v~~ivaG~d~~~~gp~Ly~iDp~G~~~~~--~~~aiG~g~~~a~~~Le~~~~~~-~se 184 (249)
++.+..++ . .+.+|+. +.+|++++ ++||.+||.|++.+. ++.++|+|+.++.++||.+|+++ |+
T Consensus 76 a~l~~~l~----~-~~~~~~l~a~~iv~~~------~~ly~id~~G~~ie~~~~~~a~GSGS~ya~g~ld~~yk~~~ms- 143 (171)
T cd01913 76 VELAKDWR----T-DRYLRRLEAMLIVADK------EHTLLISGNGDVIEPDDGIAAIGSGGNYALAAARALLDHTDLS- 143 (171)
T ss_pred HHHHHHHH----h-ccCcCceEEEEEEeCC------CcEEEECCCCCEeccCCCeEEEeCCHHHHHHHHHHhhccCCCC-
Confidence 33333322 1 1335655 65555543 389999999999998 49999999999999999999995 98
Q ss_pred HHHHHHHHHHHHHHhc---CCCcEEEEE
Q 025716 185 ETIKLAIRALLEVVES---GGKNIEVAV 209 (249)
Q Consensus 185 eai~la~~~l~~~~~~---~~~~iei~~ 209 (249)
+.++|++|++.+.++ ++++|+|-.
T Consensus 144 -~~~la~~Av~~A~~rd~~tg~~i~~~~ 170 (171)
T cd01913 144 -AEEIARKALKIAADICIYTNHNITVEE 170 (171)
T ss_pred -HHHHHHHHHHHHHhhCcccCCCEEEEe
Confidence 338999999999876 466777643
No 47
>TIGR03692 ATP_dep_HslV ATP-dependent protease HslVU, peptidase subunit. The ATP-dependent protease HslVU, a complex of hexameric HslU active as a protein-unfolding ATPase and dodecameric HslV, the catalytic threonine protease.
Probab=99.95 E-value=4.5e-27 Score=190.46 Aligned_cols=162 Identities=15% Similarity=0.131 Sum_probs=131.2
Q ss_pred CcEEEEEeCCEEEEEEeccCCc-ccccCCcccceEEe-cCCEEEEEecChhhHHHHHHHHHHHHHHhhhhcCCCCCHHHH
Q 025716 31 NAAVGVRGTDTIVLGVEKKSTV-KLQDSRSVRKIVSL-DNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYI 108 (249)
Q Consensus 31 ~t~igi~~~dgVvla~d~~~~~-~l~~~~~~~Ki~~I-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l 108 (249)
+|+|||+++||||||+|+|.+. .++.+++.+||++| ++|++|+++|..+|++.|.++++.+++.|+.+. .+.+
T Consensus 1 tTivgi~~~dgVvlaaD~r~s~g~~v~~~~~~Ki~~i~~d~i~~~~aG~~aD~q~l~~~~~~~~~~y~~~~-----~~~~ 75 (171)
T TIGR03692 1 TTILAVRRNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEEYQGNL-----TRAA 75 (171)
T ss_pred CeEEEEEECCEEEEEECCceEeceEEEcCCCCeEEEeCCCCEEEEecchHHHHHHHHHHHHHHHHHccCch-----HHHH
Confidence 6899999999999999999887 56778899999999 599999999999999999999999999998743 2444
Q ss_pred HHHHHHHHHhhhccCCCccceeEEEEEeeeCCCCCceEEEECCCCceecc--ceEeecCCchHHHHHHHhhhc-cCCcHH
Q 025716 109 TRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAW--KANATGRNSNSMREFLEKNYK-ETSGQE 185 (249)
Q Consensus 109 a~~ls~~~~~~t~~~~~rP~gv~~ivaG~d~~~~gp~Ly~iDp~G~~~~~--~~~aiG~g~~~a~~~Le~~~~-~~~see 185 (249)
++.++.+ ..+...+.+.+.+|++|+ ++||.+||.|.+.++ +++++|+|+.++.++||.+|+ ++| +
T Consensus 76 a~l~~~~----~~~~~~~~l~a~~iv~~~------~~ly~i~~~G~~ie~~~~~~a~GSGS~~a~g~ld~~y~~~~~--s 143 (171)
T TIGR03692 76 VELAKDW----RTDRYLRRLEAMLIVADK------ETSLLISGTGDVIEPEDGIAAIGSGGNYALAAARALLRNTDL--S 143 (171)
T ss_pred HHHHHHH----hhcccccccEEEEEEEcC------CCEEEEcCCCcEeccCCCeEEEeCCHHHHHHHHHHhhhcCCC--C
Confidence 4444442 112122234466666543 389999999999996 699999999999999999995 555 4
Q ss_pred HHHHHHHHHHHHHhc---CCCcEEEEE
Q 025716 186 TIKLAIRALLEVVES---GGKNIEVAV 209 (249)
Q Consensus 186 ai~la~~~l~~~~~~---~~~~iei~~ 209 (249)
|+++++++++.+.++ ++++|.|-.
T Consensus 144 a~~la~~Av~~A~~rd~~sg~~i~v~~ 170 (171)
T TIGR03692 144 AEEIAREALKIAADICIYTNHNITIEE 170 (171)
T ss_pred HHHHHHHHHHHHHhhCccCCCCEEEEe
Confidence 999999999999876 466777653
No 48
>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....
Probab=99.53 E-value=5e-15 Score=79.05 Aligned_cols=23 Identities=78% Similarity=1.314 Sum_probs=22.3
Q ss_pred CCCCCcccCCCCcchhhhhHHHH
Q 025716 4 YDRAITVFSPDGHLFQVEYALEA 26 (249)
Q Consensus 4 yd~~~~~fsp~G~l~Qveya~ka 26 (249)
||+++|+|||+|||+|||||+||
T Consensus 1 YD~~~t~FSp~Grl~QVEYA~~A 23 (23)
T PF10584_consen 1 YDRSITTFSPDGRLFQVEYAMKA 23 (23)
T ss_dssp TSSSTTSBBTTSSBHHHHHHHHH
T ss_pred CCCCceeECCCCeEEeeEeeecC
Confidence 89999999999999999999997
No 49
>COG5405 HslV ATP-dependent protease HslVU (ClpYQ), peptidase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=1.6e-12 Score=102.20 Aligned_cols=168 Identities=17% Similarity=0.151 Sum_probs=126.4
Q ss_pred cCCcEEEEEeCCEEEEEEeccCCc-ccccCCcccceEEecC-CEEEEEecChhhHHHHHHHHHHHHHHhhhhcCCCCCHH
Q 025716 29 KGNAAVGVRGTDTIVLGVEKKSTV-KLQDSRSVRKIVSLDN-HIALACAGLKADARVLINRARIECQSHRLTVEDPVTVE 106 (249)
Q Consensus 29 ~G~t~igi~~~dgVvla~d~~~~~-~l~~~~~~~Ki~~I~~-~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~ 106 (249)
+++|+++++-++-|++++|.+++- ..+.+.+..|+-+|.. +++.+++|.++|+..|.+.+..+++.|. .
T Consensus 3 h~TTiv~vr~~gkv~iagDGQVtlG~tvmK~narKvRkl~~gkvlaGFAGstADaftLfe~fe~kle~~~---------g 73 (178)
T COG5405 3 HMTTIVAVRKNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEQYQ---------G 73 (178)
T ss_pred eeEEEEEEeeCCeEEEecCceEeecceeeeccHHHHHHHcCCcEEEEecccchhHHHHHHHHHHHHHHcc---------C
Confidence 689999999999999999999876 4566667777766654 8999999999999999999999999887 3
Q ss_pred HHHHHHHHHHHhhhccCCCccceeEEEEEeeeCCCCCceEEEECCCCceecc--ceEeecCCchHHHHHHHhhhc-cCCc
Q 025716 107 YITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAW--KANATGRNSNSMREFLEKNYK-ETSG 183 (249)
Q Consensus 107 ~la~~ls~~~~~~t~~~~~rP~gv~~ivaG~d~~~~gp~Ly~iDp~G~~~~~--~~~aiG~g~~~a~~~Le~~~~-~~~s 183 (249)
.|.+..-++.+.+.....+|.+.+-+||+--+ .+|.+...|.+.+. +.++||+|..+|.+.....++ ++++
T Consensus 74 ~L~raavelaKdwr~Dk~lr~LEAmllVad~~------~il~isG~gdV~epe~~~~aIGSGgnyAl~AarAl~~~~~ls 147 (178)
T COG5405 74 DLFRAAVELAKDWRTDKYLRKLEAMLLVADKT------HILIITGNGDVIEPEDDIIAIGSGGNYALSAARALMENTELS 147 (178)
T ss_pred cHHHHHHHHHHhhhhhhHHHHHhhheeEeCCC------cEEEEecCcceecCCCCeEEEcCCchHHHHHHHHHHhccCCC
Confidence 44555556666665555667788888887433 58899999998764 699999999999999888775 4776
Q ss_pred -HHHHHHHHHHHHHHHhcCCCcEEEEEEE
Q 025716 184 -QETIKLAIRALLEVVESGGKNIEVAVMT 211 (249)
Q Consensus 184 -eeai~la~~~l~~~~~~~~~~iei~~v~ 211 (249)
+|..+.++++--+.+..++.+|.|-.+.
T Consensus 148 A~eIa~~sl~iA~eiciyTN~ni~ve~l~ 176 (178)
T COG5405 148 AREIAEKSLKIAGDICIYTNHNIVVEELR 176 (178)
T ss_pred HHHHHHHHHhhhheEEEecCCcEEEEEee
Confidence 5544444433333333455666665543
No 50
>COG3484 Predicted proteasome-type protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=9.3e-12 Score=101.32 Aligned_cols=215 Identities=18% Similarity=0.196 Sum_probs=150.0
Q ss_pred CCcEEEEEeCCEEEEEEeccCCcccccCCcccceEEe---cCC-EEEEEecChhhHHHHHHHHHHHHHH--hhhhcCCCC
Q 025716 30 GNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSL---DNH-IALACAGLKADARVLINRARIECQS--HRLTVEDPV 103 (249)
Q Consensus 30 G~t~igi~~~dgVvla~d~~~~~~l~~~~~~~Ki~~I---~~~-i~~~~sG~~~D~~~l~~~~~~~~~~--~~~~~~~~i 103 (249)
++.|||++...|.|+++|+|....+-.....+|+|.. +++ ++++.+|..+-.|.+++.+.+..+. ....+ .-+
T Consensus 1 MTYCv~l~l~~GlVf~sDsRTNAGvD~istfkKl~~~~~pGdRvlvl~taGNLA~tQaV~~ll~e~~~~d~~~~L~-n~~ 79 (255)
T COG3484 1 MTYCVGLILDFGLVFGSDSRTNAGVDYISTFKKLFVFELPGDRVLVLCTAGNLAITQAVLHLLDERIQRDDGDSLL-NIP 79 (255)
T ss_pred CceEEEEEeccceEEecccccccCchHHHHHHHHhhccCCCceEEEEEecCccHHHHHHHHHHHHHhhccchhhhh-cch
Confidence 4789999999999999999987654323356676554 233 5677899999999999988776652 11111 223
Q ss_pred CHHHHHHHHHHHHHhhh-ccCC-----CccceeEEEEEeeeCCCCCceEEEECCCCceecc----ceEeecCCchHHHHH
Q 025716 104 TVEYITRYIAGLQQKYT-QSGG-----VRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAW----KANATGRNSNSMREF 173 (249)
Q Consensus 104 ~~~~la~~ls~~~~~~t-~~~~-----~rP~gv~~ivaG~d~~~~gp~Ly~iDp~G~~~~~----~~~aiG~g~~~a~~~ 173 (249)
+.-..+..++....+-. +.+. ---|.|++|++|.-. .+-|.||.|.|.|++.+. ++.-+|.. .+-+++
T Consensus 80 sm~eattlvgetvrEv~~rds~~leka~~dfn~sfllGGQI~-G~pp~Ly~IYpqGNFIqaT~etpf~QiGEt-KYGKPi 157 (255)
T COG3484 80 SMYEATTLVGETVREVQARDSPALEKAGIDFNCSFLLGGQIK-GEPPRLYLIYPQGNFIQATPETPFLQIGET-KYGKPI 157 (255)
T ss_pred hHHHHHHHHHHHHHHHHhccCchhhccCcceeEEEEEcceec-CCCceeEEEccCCCeeecCCCCceeEcccc-ccCchh
Confidence 44455555555443221 1111 123899999999875 455899999999999864 89999984 455999
Q ss_pred HHhhhccCCc-HHHHHHHHHHHHHHHhcC---CCcEEEEEEEcCCCEE---EcCHHHHHHHHHHHHH-HHHH---HHHhh
Q 025716 174 LEKNYKETSG-QETIKLAIRALLEVVESG---GKNIEVAVMTREKGLK---QLDEAEIDAMVAEIEA-KKAA---AEAAK 242 (249)
Q Consensus 174 Le~~~~~~~s-eeai~la~~~l~~~~~~~---~~~iei~~v~~~g~~~---~~~~~ei~~~l~~i~~-~~~~---~~~~~ 242 (249)
|++.+..++. +|+.++++-.+...+.++ +-.+++-++.+|- |+ .+--.|=++|+.+|.. |... +=+++
T Consensus 158 ldR~i~~~~pLeea~kcaLvS~DSTlkSNiSVGlPldLl~~e~ds-~~v~~~~ri~edd~Y~a~ir~~W~~~lrq~f~~l 236 (255)
T COG3484 158 LDRTITYDTPLEEAAKCALVSFDSTLKSNISVGLPLDLLVYEADS-FSVRHTLRIREDDPYFAKIRSLWSSYLRQAFESL 236 (255)
T ss_pred hhhhhhccCCHHHHhhheEEecchhhhccccccCCceeEEEeccc-eeeeeeeEeccCChHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999 999999999999888764 5578999999884 32 2223334568888875 5533 22344
Q ss_pred cCCCCC
Q 025716 243 KGPPKE 248 (249)
Q Consensus 243 ~~~~~~ 248 (249)
..||-+
T Consensus 237 pd~~~~ 242 (255)
T COG3484 237 PDPPWE 242 (255)
T ss_pred CCCccc
Confidence 455543
No 51
>PF09894 DUF2121: Uncharacterized protein conserved in archaea (DUF2121); InterPro: IPR016754 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. They do show distant similarity to NTPases and to nucleic acid binding enzymes.
Probab=95.40 E-value=1.1 Score=37.02 Aligned_cols=46 Identities=15% Similarity=0.240 Sum_probs=37.9
Q ss_pred hHHHHHHHhhhccCCc-HHHHHHHHHHHHHHHhcC---CCcEEEEEEEcC
Q 025716 168 NSMREFLEKNYKETSG-QETIKLAIRALLEVVESG---GKNIEVAVMTRE 213 (249)
Q Consensus 168 ~~a~~~Le~~~~~~~s-eeai~la~~~l~~~~~~~---~~~iei~~v~~~ 213 (249)
+.|...|.+.|++.|+ +++.++...+|.++...+ ...+++...++.
T Consensus 131 ~ia~~~lkk~~~~k~~l~~i~~i~~~i~~~~a~~tpsvS~~~d~~~~~~~ 180 (194)
T PF09894_consen 131 EIANKELKKYWKPKMSLKDIENIFEKIMEEVASKTPSVSKEYDIYITTKK 180 (194)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhcCCCccCcEEEEEeccc
Confidence 6788889999999999 999999999999985432 457888877763
No 52
>COG4079 Uncharacterized protein conserved in archaea [Function unknown]
Probab=81.02 E-value=35 Score=29.41 Aligned_cols=165 Identities=17% Similarity=0.193 Sum_probs=89.1
Q ss_pred CCcEEEEEeCCEEEEEEeccCCcccccCCcccceEEecCCEEEEEecChhhHHHHHHHHHHHHHHhhhhcCCCCCHHHHH
Q 025716 30 GNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYIT 109 (249)
Q Consensus 30 G~t~igi~~~dgVvla~d~~~~~~l~~~~~~~Ki~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la 109 (249)
++.+|+.-++||.|+|.|+|. +++-|.-.|-+.|-+. +..|.--+-+.|+
T Consensus 1 MtLviay~gknGaviaGDrR~---------------------i~frgdee~re~lEek---------LYsGeIkteEEL~ 50 (293)
T COG4079 1 MTLVIAYIGKNGAVIAGDRRE---------------------ITFRGDEEDREKLEEK---------LYSGEIKTEEELA 50 (293)
T ss_pred CeEEEEEecCCCcEEeccceE---------------------EEEecChhHHHHHHHH---------hhcCccccHHHHH
Confidence 467899999999999999974 2445555555544432 2335555666677
Q ss_pred HHHHHHHHhhhc---cCCCccceeEEEEEeeeCC----CCCceEEEE-------CCCCceec-------cceEeecCC--
Q 025716 110 RYIAGLQQKYTQ---SGGVRPFGLSTLIVGFDPY----TGVPSLYQT-------DPSGTFSA-------WKANATGRN-- 166 (249)
Q Consensus 110 ~~ls~~~~~~t~---~~~~rP~gv~~ivaG~d~~----~~gp~Ly~i-------Dp~G~~~~-------~~~~aiG~g-- 166 (249)
+.+.++--.++- ....|...-+++++-+... -..-.+|.+ +-.|+-.. ....+.|..
T Consensus 51 r~aeel~Vki~vtDdr~KVrk~~d~VvvGEV~s~~~~~vkRRRvYAT~Ga~aIvel~gs~vts~~~g~g~aiIv~Gnk~~ 130 (293)
T COG4079 51 RKAEELGVKITVTDDRNKVRKRNDGVVVGEVSSVERGIVKRRRVYATAGAYAIVELRGSEVTSTSQGKGSAIIVFGNKFT 130 (293)
T ss_pred HHHHHcCCEEEEEcchHhhhcccCcEEEEEeecccccceeeeEEeecCCceEEEEecCCeeEeeecCCCceEEEECcHHH
Confidence 666654311110 0111222223344433320 011233332 11222111 123333322
Q ss_pred chHHHHHHHhhhccCCc-HHHHHHHHHHHHHHHhc---CCCcEEEEEEEcCC-CEEEcCHHHH
Q 025716 167 SNSMREFLEKNYKETSG-QETIKLAIRALLEVVES---GGKNIEVAVMTREK-GLKQLDEAEI 224 (249)
Q Consensus 167 ~~~a~~~Le~~~~~~~s-eeai~la~~~l~~~~~~---~~~~iei~~v~~~g-~~~~~~~~ei 224 (249)
-+.++.+|.++|.+.++ +++..+...+|..+..- -...++++.++++- ++.++-..++
T Consensus 131 Ke~aneflk~~l~~k~~lqd~~dal~elfe~vss~tpsVskeydiy~vs~~~d~~~rl~kkDi 193 (293)
T COG4079 131 KEVANEFLKDNLTKKSKLQDAVDALMELFETVSSKTPSVSKEYDIYQVSSNVDPVLRLVKKDI 193 (293)
T ss_pred HHHHHHHHHhhccCCCCHHHHHHHHHHHHHHhhcCCCcccceeEEEEecCCcCHHHHHHHHHH
Confidence 25677788888888888 88888877777766532 25678888888642 2444444444
No 53
>KOG3361 consensus Iron binding protein involved in Fe-S cluster formation [Energy production and conversion]
Probab=80.74 E-value=2.9 Score=32.47 Aligned_cols=43 Identities=21% Similarity=0.256 Sum_probs=39.2
Q ss_pred EEECCCCceeccceEeecCCchHHHHHHHhhhccCCc-HHHHHH
Q 025716 147 YQTDPSGTFSAWKANATGRNSNSMREFLEKNYKETSG-QETIKL 189 (249)
Q Consensus 147 y~iDp~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s-eeai~l 189 (249)
..+|-+|.+...+|-..|.|+..|.+-+-..|-..++ +|+.++
T Consensus 71 Ikvd~~g~I~dakFKTFGCGSAIASSS~aTewvkgkt~dea~kI 114 (157)
T KOG3361|consen 71 IKVDDSGVIEDAKFKTFGCGSAIASSSLATEWVKGKTLDEALKI 114 (157)
T ss_pred EEECCCCcEEEeeeeecccchHhhhhHHHHHHHccccHHHHHhc
Confidence 3578899999999999999999999999999999999 998765
No 54
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=54.55 E-value=16 Score=24.24 Aligned_cols=32 Identities=25% Similarity=0.275 Sum_probs=28.9
Q ss_pred cccCC-CCcchhhhhHHHHHccCCcEEEEEeCC
Q 025716 9 TVFSP-DGHLFQVEYALEAVRKGNAAVGVRGTD 40 (249)
Q Consensus 9 ~~fsp-~G~l~Qveya~kav~~G~t~igi~~~d 40 (249)
|.||+ +|.+.--+|...|..+|-..+||.=.+
T Consensus 6 t~~S~~~~~~~~~~~~~~a~~~g~~~v~iTDh~ 38 (67)
T smart00481 6 SDYSLLDGALSPEELVKRAKELGLKAIAITDHG 38 (67)
T ss_pred cCCccccccCCHHHHHHHHHHcCCCEEEEeeCC
Confidence 57888 999999999999999999999998776
No 55
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=47.58 E-value=14 Score=23.04 Aligned_cols=32 Identities=22% Similarity=0.252 Sum_probs=24.0
Q ss_pred eecCCchHHHHHHHhhh-ccCCc-HHHHHHHHHH
Q 025716 162 ATGRNSNSMREFLEKNY-KETSG-QETIKLAIRA 193 (249)
Q Consensus 162 aiG~g~~~a~~~Le~~~-~~~~s-eeai~la~~~ 193 (249)
+.|+....+...+.+.. .++++ ++.++.+++.
T Consensus 12 ~LGy~~~e~~~av~~~~~~~~~~~e~~ik~aLk~ 45 (47)
T PF07499_consen 12 SLGYSKAEAQKAVSKLLEKPGMDVEELIKQALKL 45 (47)
T ss_dssp HTTS-HHHHHHHHHHHHHSTTS-HHHHHHHHHCC
T ss_pred HcCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHhh
Confidence 45888888999998877 78888 9888877653
No 56
>PF11211 DUF2997: Protein of unknown function (DUF2997); InterPro: IPR021375 This family of proteins has no known function.
Probab=36.53 E-value=53 Score=20.78 Aligned_cols=33 Identities=15% Similarity=0.162 Sum_probs=26.6
Q ss_pred EEEECCCCceeccceEeecCCchHHHHHHHhhh
Q 025716 146 LYQTDPSGTFSAWKANATGRNSNSMREFLEKNY 178 (249)
Q Consensus 146 Ly~iDp~G~~~~~~~~aiG~g~~~a~~~Le~~~ 178 (249)
-|.|+|+|.+...--...|.....+...|++..
T Consensus 2 ~~~I~~dG~V~~~v~G~~G~~C~~~t~~lE~~L 34 (48)
T PF11211_consen 2 EFTIYPDGRVEEEVEGFKGSSCLEATAALEEAL 34 (48)
T ss_pred EEEECCCcEEEEEEEeccChhHHHHHHHHHHHh
Confidence 367899999988777778888888888887654
No 57
>COG3193 GlcG Uncharacterized protein, possibly involved in utilization of glycolate and propanediol [General function prediction only]
Probab=36.14 E-value=1.1e+02 Score=24.03 Aligned_cols=37 Identities=22% Similarity=0.176 Sum_probs=30.0
Q ss_pred cCCc-HHHHHHHHHHHHHHHhcCCCcEEEEEEEcCCCEE
Q 025716 180 ETSG-QETIKLAIRALLEVVESGGKNIEVAVMTREKGLK 217 (249)
Q Consensus 180 ~~~s-eeai~la~~~l~~~~~~~~~~iei~~v~~~g~~~ 217 (249)
+.++ +.+.+++..++.++.+. +.++.|.+++..|...
T Consensus 6 ~~Ls~e~a~~ii~aA~a~a~~~-g~~VtvaVVD~~G~~~ 43 (141)
T COG3193 6 PVLSLELANKIIAAAVAEAQQL-GVPVTVAVVDAGGHLV 43 (141)
T ss_pred cccCHHHHHHHHHHHHHHHHHh-CCceEEEEECCCCCEE
Confidence 5678 88888888888888665 7899999999988443
No 58
>PF04079 DUF387: Putative transcriptional regulators (Ypuh-like); InterPro: IPR005234 This family represents ScpB, which along with ScpA (IPR003768 from INTERPRO) interacts with SMC in vivo forming a complex that is required for chromosome condensation and segregation [, ]. The SMC-Scp complex appears to be similar to the MukB-MukE-Muk-F complex in Escherichia coli [], where MukB (IPR007406 from INTERPRO) is the homologue of SMC. ScpA and ScpB have little sequence similarity to MukE (IPR007385 from INTERPRO) or MukF (IPR005582 from INTERPRO), they are predicted to be structurally similar, being predominantly alpha-helical with coiled coil regions. In general scpA and scpB form an operon in most bacterial genomes. Flanking genes are highly variable suggesting that the operon has moved throughout evolution. Bacteria containing an smc gene also contain scpA or scpB but not necessarily both. An exception is found in Deinococcus radiodurans, which contains scpB but neither smc nor scpA. In the archaea the gene order SMC-ScpA is conserved in nearly all species, as is the very short distance between the two genes, indicating co-transcription of the both in different archaeal genera and arguing that interaction of the gene products is not confined to the homologues in Bacillus subtilis. It would seem probable that, in light of all the studies, SMC, ScpA and ScpB proteins or homologues act together in chromosome condensation and segregation in all prokaryotes []. ; GO: 0051304 chromosome separation; PDB: 1T6S_B 2Z99_A.
Probab=35.90 E-value=1e+02 Score=24.74 Aligned_cols=57 Identities=18% Similarity=0.254 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEEEEcCCCEEEcCHHHHHHHHHHHHHH---HHHHHHhhc
Q 025716 185 ETIKLAIRALLEVVESGGKNIEVAVMTREKGLKQLDEAEIDAMVAEIEAK---KAAAEAAKK 243 (249)
Q Consensus 185 eai~la~~~l~~~~~~~~~~iei~~v~~~g~~~~~~~~ei~~~l~~i~~~---~~~~~~~~~ 243 (249)
+.++.++.-|.+........++|..+ +|.++..+..+..+++.++... ..--+++++
T Consensus 27 ~~v~~~l~~L~~~y~~~~~gl~l~~~--~~~y~l~tk~~~~~~v~~~~~~~~~~~LS~aalE 86 (159)
T PF04079_consen 27 DEVEEALEELQEEYNEEDRGLELVEV--GGGYRLQTKPEYAEYVEKLFKKPKPPKLSQAALE 86 (159)
T ss_dssp HHHHHHHHHHHHHHHHCT-SEEEEEE--TTEEEEEE-GGGHHHHHHHHCTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCCEEEEEE--CCEEEEEEhHHHHHHHHHHhccCccCCCCHHHHH
Confidence 44555566666666555668998877 4459999999999999999875 344444443
No 59
>PF03646 FlaG: FlaG protein; InterPro: IPR005186 Although these proteins are known to be important for flagellar their exact function is unknown.; PDB: 2HC5_A.
Probab=32.69 E-value=2e+02 Score=21.00 Aligned_cols=51 Identities=18% Similarity=0.313 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHhc-----------CCCcEEEEEEEcC-C-CEEEcCHHHHHHHHHHHHHH
Q 025716 184 QETIKLAIRALLEVVES-----------GGKNIEVAVMTRE-K-GLKQLDEAEIDAMVAEIEAK 234 (249)
Q Consensus 184 eeai~la~~~l~~~~~~-----------~~~~iei~~v~~~-g-~~~~~~~~ei~~~l~~i~~~ 234 (249)
.+-++-++..|...+.. +.+.+-|.+++++ | .+|.++++++-++..+|.+.
T Consensus 36 ~e~l~~~v~~ln~~~~~~~~~l~F~vde~~~~~vVkViD~~T~eVIRqIP~Ee~l~l~~~l~e~ 99 (107)
T PF03646_consen 36 KEELEEAVEKLNEFLQALNTSLRFSVDEESGRVVVKVIDKETGEVIRQIPPEELLDLAKRLREL 99 (107)
T ss_dssp HHHHHHHHHHHHHHHTTSS--EEEEEEEETTEEEEEEEETTT-SEEEEE-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCceEEEEecCCCcEEEEEEECCCCcEEEeCCcHHHHHHHHHHHHH
Confidence 44455666666666532 3456889999984 5 45899999999998888764
No 60
>PF00178 Ets: Ets-domain; InterPro: IPR000418 Transcription factors are protein molecules that bind to specific DNA sequences in the genome, resulting in the induction or inhibition of gene transcription []. The ets oncogene is such a factor, possessing a region of 85-90 amino acids known as the ETS (erythroblast transformation specific) domain [, , ]. This domain is rich in positively-charged and aromatic residues, and binds to purine-rich segments of DNA. The ETS domain has been identified in other transcription factors such as PU.1, human erg, human elf-1, human elk-1, GA binding protein, and a number of others [, , ]. It is generally localized at the C terminus of the protein, with the exception of ELF-1, ELK-1, ELK-3, ELK-4 and ERF where it is found at the N terminus. NMR-analysis of the structure of the Ets domains revealed that it contains three alpha-helixes (1-3) and four-stranded beta-sheets (1-4) arranged in the order alpha1-beta1-beta2-alpha2-alpha3-beta3-beta4 forming a winged helix-turn-helix (wHTH) topology []. The third alpha-helix is responsive to contact to the major groove of the DNA. Different members of the Ets family proteins display distinct DNA binding specificities. The Ets domains and the flanking amino acid sequences of the proteins influence the binding affinity, and the alteration of a single amino acid in the Ets domain can change its DNA binding specificities. Avian leukemia virus E26 is a replication defective retrovirus that induces a mixed erythroid/myeloid leukemia in chickens.This virus carries two distinct oncogenes: v-myb and v-ets. The ets portion of this oncogene is required for the induction of erythroblastosis. V-ets and c-ets-1, its cellular progenitor, have been shown [] to be nuclear DNA-binding proteins. Ets-1 differs slightly from v-ets at its carboxy-terminal region. In most species where it has been sequenced, c-ets-1 exists in various isoforms generated by alternative splicing and differential phosphorylation.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1DUX_F 4AVP_B 1HBX_G 1BC7_C 1K6O_A 1BC8_C 1PUE_E 1FLI_A 2DAO_A 1WWX_A ....
Probab=31.92 E-value=85 Score=22.40 Aligned_cols=28 Identities=14% Similarity=0.152 Sum_probs=22.9
Q ss_pred EEEEEE-cCCCEEEcCHHHHHHHHHHHHH
Q 025716 206 EVAVMT-REKGLKQLDEAEIDAMVAEIEA 233 (249)
Q Consensus 206 ei~~v~-~~g~~~~~~~~ei~~~l~~i~~ 233 (249)
-|.|++ +.|.|+.+++++|+++...-..
T Consensus 20 ~I~Wt~~~~~eFki~d~~~vA~lWG~~k~ 48 (85)
T PF00178_consen 20 IIAWTGKRGGEFKIVDPEAVARLWGKHKN 48 (85)
T ss_dssp TEEEEETSTTEEEESSHHHHHHHHHHHTT
T ss_pred eeEeeccCCCeEEecCHHHHHHHHHHHcC
Confidence 378999 4678999999999999876554
No 61
>COG4245 TerY Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain [General function prediction only]
Probab=31.21 E-value=1.9e+02 Score=24.09 Aligned_cols=51 Identities=14% Similarity=0.304 Sum_probs=36.3
Q ss_pred CceEEEECCCCceeccceEeecCCchHHHHHHHhhhccCCcHHHHHHHHHHHHHHHhcC---CCcEEEEEEEcCCCEE
Q 025716 143 VPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKETSGQETIKLAIRALLEVVESG---GKNIEVAVMTREKGLK 217 (249)
Q Consensus 143 gp~Ly~iDp~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~seeai~la~~~l~~~~~~~---~~~iei~~v~~~g~~~ 217 (249)
=|....+|.+|++...+ =|+++..++.|.+.+.-+ ...+++++|+-+|..+
T Consensus 4 lP~~lllDtSgSM~Ge~------------------------IealN~Glq~m~~~Lkqdp~Ale~v~lsIVTF~~~a~ 57 (207)
T COG4245 4 LPCYLLLDTSGSMIGEP------------------------IEALNAGLQMMIDTLKQDPYALERVELSIVTFGGPAR 57 (207)
T ss_pred CCEEEEEecCccccccc------------------------HHHHHHHHHHHHHHHHhChhhhheeEEEEEEecCcce
Confidence 37778889999876542 267777787777776543 4578999999876444
No 62
>smart00413 ETS erythroblast transformation specific domain. variation of the helix-turn-helix motif
Probab=30.90 E-value=66 Score=23.19 Aligned_cols=27 Identities=15% Similarity=0.128 Sum_probs=22.4
Q ss_pred EEEEEEEc-CCCEEEcCHHHHHHHHHHH
Q 025716 205 IEVAVMTR-EKGLKQLDEAEIDAMVAEI 231 (249)
Q Consensus 205 iei~~v~~-~g~~~~~~~~ei~~~l~~i 231 (249)
=-|.|+++ +|.|+.+++++|+++...-
T Consensus 19 ~~I~W~~k~~g~Fkl~~~~~vA~lWG~~ 46 (87)
T smart00413 19 DIIRWTDRDGGEFKLVDPEEVARLWGQR 46 (87)
T ss_pred CeEEeeCCCCCEEEecCHHHHHHHHhhh
Confidence 35889996 6899999999999987754
No 63
>cd04513 Glycosylasparaginase Glycosylasparaginase catalyzes the hydrolysis of the glycosylamide bond of asparagine-linked glycoproteins. This enzyme is an amidase located inside lysosomes. Mutation of this gene in humans causes a genetic disorder known as aspartylglycosaminuria (AGU). The glycosylasparaginase precursor undergoes autoproteolysis through an N-O or N-S acyl rearrangement of the peptide bond, which leads to the cleavage of a peptide bond between an Asp and a Thr. This proteolysis step generates an exposed N-terminal catalytic threonine and activates the enzyme.
Probab=30.72 E-value=2.3e+02 Score=24.81 Aligned_cols=58 Identities=17% Similarity=0.176 Sum_probs=39.6
Q ss_pred ceEeecCCchHHHHHHHhh----hccCCc-HHHHHHHHHHHHHHHhcCCCcEEEEEEEcCCCE
Q 025716 159 KANATGRNSNSMREFLEKN----YKETSG-QETIKLAIRALLEVVESGGKNIEVAVMTREKGL 216 (249)
Q Consensus 159 ~~~aiG~g~~~a~~~Le~~----~~~~~s-eeai~la~~~l~~~~~~~~~~iei~~v~~~g~~ 216 (249)
-+.++|.|...++..+-.. .+..++ ++|.+.++.-+...+...+...-+..|+++|.+
T Consensus 186 a~s~TG~GE~iir~~~A~~v~~~m~~G~~~~~A~~~~i~~~~~~~~~~~~~gg~Iavd~~G~~ 248 (263)
T cd04513 186 AAAATGDGEEMMRFLPSFQAVEYMRQGMSPKEACLEAIKRIAKHFDGPDFEGAVVALNKKGEY 248 (263)
T ss_pred EEEeeccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcCCCcEEEEEEcCCCCE
Confidence 4568899988877766543 445788 998888877766554333445667777887744
No 64
>PF09702 Cas_Csa5: CRISPR-associated protein (Cas_Csa5); InterPro: IPR010157 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor family of Cas protein found in various species of Sulfolobus and Pyrococcus (all archaeal). It is found with two different CRISPR loci in Sulfolobus solfataricus.
Probab=30.51 E-value=2.3e+02 Score=21.09 Aligned_cols=24 Identities=13% Similarity=0.383 Sum_probs=17.5
Q ss_pred EcCCCEEEc----CHHHHHHHHHHHHHH
Q 025716 211 TREKGLKQL----DEAEIDAMVAEIEAK 234 (249)
Q Consensus 211 ~~~g~~~~~----~~~ei~~~l~~i~~~ 234 (249)
+++|....+ +++||+.|++.+++.
T Consensus 61 ekeg~~i~~g~lPt~~eVe~Fl~~v~~d 88 (105)
T PF09702_consen 61 EKEGNYIIVGYLPTDEEVEDFLDDVERD 88 (105)
T ss_pred cCCCCEEecCCCCChHHHHHHHHHHHHH
Confidence 456655543 489999999999873
No 65
>PRK08452 flagellar protein FlaG; Provisional
Probab=28.85 E-value=2.7e+02 Score=21.39 Aligned_cols=33 Identities=15% Similarity=0.177 Sum_probs=26.5
Q ss_pred CCcEEEEEEEcC--CCEEEcCHHHHHHHHHHHHHH
Q 025716 202 GKNIEVAVMTRE--KGLKQLDEAEIDAMVAEIEAK 234 (249)
Q Consensus 202 ~~~iei~~v~~~--g~~~~~~~~ei~~~l~~i~~~ 234 (249)
.+.+-|.+++.+ ..+|.++++++-++..+|.+.
T Consensus 81 ~~~~vVkVvD~~T~eVIRqIP~Ee~L~l~~~m~e~ 115 (124)
T PRK08452 81 IKGLVVSVKEANGGKVIREIPSKEAIELMEYMRDV 115 (124)
T ss_pred CCcEEEEEEECCCCceeeeCCCHHHHHHHHHHHHh
Confidence 456888899974 367899999999999888763
No 66
>PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium [].
Probab=27.59 E-value=79 Score=26.29 Aligned_cols=33 Identities=18% Similarity=0.340 Sum_probs=27.4
Q ss_pred CCCHHHHHHHHHHHHHhhhccCCCccceeEEEEEeee
Q 025716 102 PVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFD 138 (249)
Q Consensus 102 ~i~~~~la~~ls~~~~~~t~~~~~rP~gv~~ivaG~d 138 (249)
.-+|+..+.-++++++.|.+.++.+.+ +|+||.
T Consensus 44 ~rtP~~~a~Dl~~~i~~y~~~w~~~~v----vLiGYS 76 (192)
T PF06057_consen 44 ERTPEQTAADLARIIRHYRARWGRKRV----VLIGYS 76 (192)
T ss_pred hCCHHHHHHHHHHHHHHHHHHhCCceE----EEEeec
Confidence 557899999999999999988776554 888886
No 67
>PF01242 PTPS: 6-pyruvoyl tetrahydropterin synthase; InterPro: IPR007115 The complex organic chemistry involved in the transformation of GTP to tetrahydrobiopterin is catalysed by only three enzymes: GTP cyclohydrolase I, 6-pyruvoyltetrahydropterin synthase and sepiapterin reductase. Tetrahydrobiopterin is the cofactor for several aromatic amino acid monooxygenases and the nitric oxide synthases. 6-Pyruvoyl tetrahydropterin synthase (PTPS) [] is a Zn-dependent metalloprotein, transforms dihydroneopterin triphosphate into 6-pyruvoyltetrahydropterin in the presence of Mg(II) and for which the crystal structure is known. The enzyme is a homohexameric, composed of a dimer of trimers. A transition metal binding site formed by the three histidine residues 23, 48 and 50 is present in each subunit, and bound Zn(II) is responsible for the enzymatic activity. Site-directed mutagenesis of each of these three histidine residues results in a complete loss of metal binding and enzymatic activity [, ]. The function of the bacterial branch of the sequence lineage appears not to have been established.; GO: 0003874 6-pyruvoyltetrahydropterin synthase activity, 0046872 metal ion binding, 0006729 tetrahydrobiopterin biosynthetic process; PDB: 3QNA_E 3QN9_A 3QN0_B 1Y13_C 3D7J_A 3I2B_J 2OBA_D 3M0N_A 2A0S_A 3LZE_A ....
Probab=26.35 E-value=1.8e+02 Score=21.76 Aligned_cols=46 Identities=20% Similarity=0.130 Sum_probs=28.9
Q ss_pred ecChhhHHHHHHHHHHHHHH--hhhhc----CC----CCCHHHHHHHHHHHHHhhh
Q 025716 75 AGLKADARVLINRARIECQS--HRLTV----ED----PVTVEYITRYIAGLQQKYT 120 (249)
Q Consensus 75 sG~~~D~~~l~~~~~~~~~~--~~~~~----~~----~i~~~~la~~ls~~~~~~t 120 (249)
.|..-|+..+.+.++..+.. |++.+ .. .+|++.||.++.+.+....
T Consensus 43 ~g~v~DF~~lk~~~~~i~~~lDh~~Ln~~~~~~~~~~~pT~E~lA~~i~~~l~~~l 98 (123)
T PF01242_consen 43 DGMVVDFGDLKKIIKEIDDQLDHKFLNEDDPEFDDINNPTAENLARWIFERLKEKL 98 (123)
T ss_dssp TSSSS-HHHHHHHHHHHHHHHTTEEGGHHSGCGCSSTS--HHHHHHHHHHHHHHHH
T ss_pred CCEEEEHHHHHHHHHHHHHHhCcccccCCChhhhccCCCCHHHHHHHHHHHHHHHh
Confidence 36666888888877765543 33332 11 1789999999999987665
No 68
>PF02811 PHP: PHP domain; InterPro: IPR004013 The PHP (Polymerase and Histidinol Phosphatase) domain is a putative phosphoesterase domain. This family is often associated with an N-terminal region IPR003141 from INTERPRO.; GO: 0003824 catalytic activity; PDB: 2WJE_A 3QY8_A 2WJD_A 2WJF_A 1PB0_B 1M68_A 1M65_A 3E38_B 2W9M_A 3E0F_A ....
Probab=26.14 E-value=66 Score=24.98 Aligned_cols=31 Identities=32% Similarity=0.383 Sum_probs=27.0
Q ss_pred cccC-CCCcchhhhhHHHHHccCCcEEEEEeC
Q 025716 9 TVFS-PDGHLFQVEYALEAVRKGNAAVGVRGT 39 (249)
Q Consensus 9 ~~fs-p~G~l~Qveya~kav~~G~t~igi~~~ 39 (249)
|.|| .+|..---||...|.+.|-..|||.=.
T Consensus 7 T~~s~~dg~~~~~e~v~~A~~~Gl~~i~iTDH 38 (175)
T PF02811_consen 7 TKYSILDGKDSPEEYVEQAKEKGLDAIAITDH 38 (175)
T ss_dssp -TTTSSTSSSSHHHHHHHHHHTTESEEEEEEE
T ss_pred ccCcchhhcCCHHHHHHHHHHcCCCEEEEcCC
Confidence 5688 899999999999999999999998766
No 69
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=25.35 E-value=1.9e+02 Score=21.74 Aligned_cols=42 Identities=17% Similarity=0.307 Sum_probs=27.0
Q ss_pred HHHHHHHHhcCCCcEEEEEEEcCCCEEEc--CHHHHHHHHHHHH
Q 025716 191 IRALLEVVESGGKNIEVAVMTREKGLKQL--DEAEIDAMVAEIE 232 (249)
Q Consensus 191 ~~~l~~~~~~~~~~iei~~v~~~g~~~~~--~~~ei~~~l~~i~ 232 (249)
...|...+..+...+.+..|.|||.++.- .+-..+++++.|.
T Consensus 66 ~~~lr~~l~~~~~~f~~vLiGKDG~vK~r~~~p~~~~~lf~~ID 109 (118)
T PF13778_consen 66 IQALRKRLRIPPGGFTVVLIGKDGGVKLRWPEPIDPEELFDTID 109 (118)
T ss_pred HHHHHHHhCCCCCceEEEEEeCCCcEEEecCCCCCHHHHHHHHh
Confidence 34455555555667999999999977643 3444555555554
No 70
>PRK09732 hypothetical protein; Provisional
Probab=24.22 E-value=2.5e+02 Score=21.80 Aligned_cols=36 Identities=14% Similarity=0.054 Sum_probs=29.3
Q ss_pred cCCc-HHHHHHHHHHHHHHHhcCCCcEEEEEEEcCCCE
Q 025716 180 ETSG-QETIKLAIRALLEVVESGGKNIEVAVMTREKGL 216 (249)
Q Consensus 180 ~~~s-eeai~la~~~l~~~~~~~~~~iei~~v~~~g~~ 216 (249)
+.|| +.|.+++..++.++.+. +.++-|+++|..|..
T Consensus 5 ~~Ltl~~A~~~~~aA~~~A~~~-g~~v~iaVvD~~G~l 41 (134)
T PRK09732 5 VILSQQMASAIIAAGQEEAQKN-NWSVSIAVADDGGHL 41 (134)
T ss_pred ccCCHHHHHHHHHHHHHHHHHh-CCCEEEEEEcCCCCE
Confidence 4588 89999988888888766 458999999998743
No 71
>PRK07738 flagellar protein FlaG; Provisional
Probab=23.69 E-value=3.3e+02 Score=20.68 Aligned_cols=33 Identities=12% Similarity=0.120 Sum_probs=27.0
Q ss_pred CCcEEEEEEEcC--CCEEEcCHHHHHHHHHHHHHH
Q 025716 202 GKNIEVAVMTRE--KGLKQLDEAEIDAMVAEIEAK 234 (249)
Q Consensus 202 ~~~iei~~v~~~--g~~~~~~~~ei~~~l~~i~~~ 234 (249)
.+.+-|.+++++ ..+|.++++++-++..+|.+.
T Consensus 74 t~~~vVkVvD~~T~EVIRQIPpEe~L~l~~~m~e~ 108 (117)
T PRK07738 74 LNEYYVQVVDERTNEVIREIPPKKLLDMYAAMMEF 108 (117)
T ss_pred CCcEEEEEEECCCCeeeeeCCCHHHHHHHHHHHHH
Confidence 457889999973 367899999999999988764
No 72
>KOG3806 consensus Predicted transcription factor [Transcription]
Probab=23.27 E-value=1.5e+02 Score=24.21 Aligned_cols=26 Identities=15% Similarity=0.202 Sum_probs=21.5
Q ss_pred EEEEEEEcCC-CEEEcCHHHHHHHHHH
Q 025716 205 IEVAVMTREK-GLKQLDEAEIDAMVAE 230 (249)
Q Consensus 205 iei~~v~~~g-~~~~~~~~ei~~~l~~ 230 (249)
=-|+|..++| .|+.++++||++.+..
T Consensus 86 ~~I~Wtg~~g~EFkl~dp~eVArlWG~ 112 (177)
T KOG3806|consen 86 HIIAWTGKDGLEFKLVDPDEVARLWGA 112 (177)
T ss_pred CeeEEeCCCCceEEecCHHHHHHHHhh
Confidence 3578888777 9999999999988753
No 73
>PF03928 DUF336: Domain of unknown function (DUF336); InterPro: IPR005624 This entry contains uncharacterised proteins, including GlcG P45504 from SWISSPROT. The alignment contains many conserved motifs that are suggestive of cofactor binding and enzymatic activity.; PDB: 2A2L_D 3FPW_A 3FPV_E.
Probab=23.24 E-value=1.5e+02 Score=22.48 Aligned_cols=35 Identities=26% Similarity=0.276 Sum_probs=24.3
Q ss_pred CCc-HHHHHHHHHHHHHHHhcCCCcEEEEEEEcCCCE
Q 025716 181 TSG-QETIKLAIRALLEVVESGGKNIEVAVMTREKGL 216 (249)
Q Consensus 181 ~~s-eeai~la~~~l~~~~~~~~~~iei~~v~~~g~~ 216 (249)
.++ ++|.+++..+++.+.+.+ .++-|++|+..|..
T Consensus 2 ~l~~~~A~~l~~~a~~~a~~~g-~~v~iaVvd~~G~~ 37 (132)
T PF03928_consen 2 SLTLEDAWKLGDAAVEEARERG-LPVSIAVVDAGGHL 37 (132)
T ss_dssp EE-HHHHHHHHHHHHHHHHHTT----EEEEEETTS-E
T ss_pred CcCHHHHHHHHHHHHHHHHHhC-CCeEEEEEECCCCE
Confidence 467 888899888888887654 34889999998733
No 74
>COG1334 FlaG Uncharacterized flagellar protein FlaG [Cell motility and secretion]
Probab=23.03 E-value=3.5e+02 Score=20.70 Aligned_cols=49 Identities=14% Similarity=0.291 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHhc-----------CCCcEEEEEEEcC-C-CEEEcCHHHHHHHHHHHHH
Q 025716 185 ETIKLAIRALLEVVES-----------GGKNIEVAVMTRE-K-GLKQLDEAEIDAMVAEIEA 233 (249)
Q Consensus 185 eai~la~~~l~~~~~~-----------~~~~iei~~v~~~-g-~~~~~~~~ei~~~l~~i~~ 233 (249)
|.+..+.+=|.+.+++ ..+.+-|.+++++ | .+|.++|+++-++..+|.+
T Consensus 49 e~L~~~v~~ink~~k~~nt~l~F~~dd~lg~~vVkI~d~~TgeVIRqIPpee~L~l~~r~~d 110 (120)
T COG1334 49 EKLALIVEDINKLLKSLNTHLNFSYDDELGELVVKIIDKDTGEVIRQIPPEEALELAARMRD 110 (120)
T ss_pred HHHHHHHHHHHHHHHhhcCceEEEEecccCcEEEEEEECCCCcchhhCChHHHHHHHHHHHH
Confidence 3455555556555542 2445778888885 3 6688999999999888864
No 75
>PRK00912 ribonuclease P protein component 3; Provisional
Probab=22.80 E-value=99 Score=26.10 Aligned_cols=39 Identities=23% Similarity=0.318 Sum_probs=33.2
Q ss_pred CCCCCCCCcccCCCCcchhhhhHHHHHccCCcEEEEEeCC
Q 025716 1 MARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTD 40 (249)
Q Consensus 1 ~~~yd~~~~~fsp~G~l~Qveya~kav~~G~t~igi~~~d 40 (249)
||-||.-+-+ +|+|..---|++.+|+..|=..|||....
T Consensus 1 ~m~~DlHvHt-~~d~~~~~~e~i~~A~~~Gl~~i~itdH~ 39 (237)
T PRK00912 1 MKFYDLNVHA-VPDGYDTVLRLISEASHLGYSGIALSNHS 39 (237)
T ss_pred CCceEeccCC-CCCCcchHHHHHHHHHHCCCCEEEEecCc
Confidence 7778876666 48899999999999999999999998663
No 76
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=22.17 E-value=1.6e+02 Score=27.47 Aligned_cols=123 Identities=15% Similarity=0.210 Sum_probs=72.7
Q ss_pred CCEEEEEecChhhHHHHHHHHHHHHHHhhhhcC-CCCCHHHHHHHHHHHHHhhhccCCCccceeEEEEEeeeC------C
Q 025716 68 NHIALACAGLKADARVLINRARIECQSHRLTVE-DPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDP------Y 140 (249)
Q Consensus 68 ~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~-~~i~~~~la~~ls~~~~~~t~~~~~rP~gv~~ivaG~d~------~ 140 (249)
+-|+++=+|..--+-++.-.+.+..++-+.-|. --.|.+.||..++.......+..+ +-|..|++|.|- -
T Consensus 100 dvIglAeTGSGKT~afaLPIl~~LL~~p~~~~~lVLtPtRELA~QI~e~fe~Lg~~ig---lr~~~lvGG~~m~~q~~~L 176 (476)
T KOG0330|consen 100 DVIGLAETGSGKTGAFALPILQRLLQEPKLFFALVLTPTRELAQQIAEQFEALGSGIG---LRVAVLVGGMDMMLQANQL 176 (476)
T ss_pred cEEEEeccCCCchhhhHHHHHHHHHcCCCCceEEEecCcHHHHHHHHHHHHHhccccC---eEEEEEecCchHHHHHHHh
Confidence 446666688877777777777776665444344 234678899999999988887665 448899999974 1
Q ss_pred CCCceEEEECCCCceeccceEeecCCchHHHHH-HHhhhc-cCCc-HHHHHHHHHHH
Q 025716 141 TGVPSLYQTDPSGTFSAWKANATGRNSNSMREF-LEKNYK-ETSG-QETIKLAIRAL 194 (249)
Q Consensus 141 ~~gp~Ly~iDp~G~~~~~~~~aiG~g~~~a~~~-Le~~~~-~~~s-eeai~la~~~l 194 (249)
-..|++..-.| |..+.+---.-|..-...+-+ |+.-.+ -+|+ ++-+..+++.+
T Consensus 177 ~kkPhilVaTP-GrL~dhl~~Tkgf~le~lk~LVlDEADrlLd~dF~~~ld~ILk~i 232 (476)
T KOG0330|consen 177 SKKPHILVATP-GRLWDHLENTKGFSLEQLKFLVLDEADRLLDMDFEEELDYILKVI 232 (476)
T ss_pred hcCCCEEEeCc-HHHHHHHHhccCccHHHhHHHhhchHHhhhhhhhHHHHHHHHHhc
Confidence 24688854333 444443222233332222211 222221 1556 56566655554
No 77
>COG1938 Archaeal enzymes of ATP-grasp superfamily [General function prediction only]
Probab=21.49 E-value=5.1e+02 Score=22.41 Aligned_cols=69 Identities=14% Similarity=0.164 Sum_probs=43.4
Q ss_pred EEEEeeeC--CCCCceEEEECCCCcee---------c-cceEeecCCchHHHHHHHhhhcc---------CCc-HHHHHH
Q 025716 132 TLIVGFDP--YTGVPSLYQTDPSGTFS---------A-WKANATGRNSNSMREFLEKNYKE---------TSG-QETIKL 189 (249)
Q Consensus 132 ~ivaG~d~--~~~gp~Ly~iDp~G~~~---------~-~~~~aiG~g~~~a~~~Le~~~~~---------~~s-eeai~l 189 (249)
..++|.+. ..+.|.+|.+-.+.... . ......|-.+......+.+.... +.. -+|...
T Consensus 112 i~~~g~~~~~~~e~~~v~~va~~~~~~~~l~~~~~~~~~~G~I~G~~g~ll~e~~~r~i~a~~ll~et~~~~PDP~AAa~ 191 (244)
T COG1938 112 ISLGGMPARLREEKPSVYGVATSEEKLEKLKDLGAEPLEEGTIVGPSGALLNECLKRGIPALVLLAETFGDRPDPRAAAR 191 (244)
T ss_pred EEecCCCcccccCCCceEEEecchhhhhHHhhcCCCccccceeecccHHHHHHHHHcCCCeEEEeccccCCCCChHHHHH
Confidence 34555431 24678999986665511 1 23478888888877777776551 222 566667
Q ss_pred HHHHHHHHHhc
Q 025716 190 AIRALLEVVES 200 (249)
Q Consensus 190 a~~~l~~~~~~ 200 (249)
++++|.+.+..
T Consensus 192 vve~lnk~~~l 202 (244)
T COG1938 192 VVEALNKMLGL 202 (244)
T ss_pred HHHHHHHHhcC
Confidence 77788888743
No 78
>PRK08868 flagellar protein FlaG; Provisional
Probab=21.37 E-value=4.2e+02 Score=20.97 Aligned_cols=33 Identities=9% Similarity=0.193 Sum_probs=26.8
Q ss_pred CCcEEEEEEEcC--CCEEEcCHHHHHHHHHHHHHH
Q 025716 202 GKNIEVAVMTRE--KGLKQLDEAEIDAMVAEIEAK 234 (249)
Q Consensus 202 ~~~iei~~v~~~--g~~~~~~~~ei~~~l~~i~~~ 234 (249)
.+.+-|.+++++ ..+|.++++++-++..+|.+.
T Consensus 99 tgr~VVkViD~~T~EVIRQIP~Ee~L~la~~l~e~ 133 (144)
T PRK08868 99 SGRDVVTIYEASTGDIIRQIPDEEMLEVLRRLAEQ 133 (144)
T ss_pred CCCEEEEEEECCCCceeeeCCCHHHHHHHHHHHHh
Confidence 456789999973 367899999999999998853
No 79
>COG4728 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.80 E-value=1.1e+02 Score=22.80 Aligned_cols=31 Identities=16% Similarity=0.267 Sum_probs=27.2
Q ss_pred ceEEecCCEEEEEecChhhHHHHHHHHHHHH
Q 025716 62 KIVSLDNHIALACAGLKADARVLINRARIEC 92 (249)
Q Consensus 62 Ki~~I~~~i~~~~sG~~~D~~~l~~~~~~~~ 92 (249)
-++.|-+..++.+.|..+|.-.+++.+++..
T Consensus 9 ~~~~i~~~~gl~~v~~~~~~s~~~~k~~~~~ 39 (124)
T COG4728 9 IIFKIKDKLGLTFVSKSADMSIQVEKAERLI 39 (124)
T ss_pred EEEEEhhhcCcEEEEecchhHHHHHHHHHhh
Confidence 4689999999999999999999999888754
No 80
>cd01396 MeCP2_MBD MeCP2, MBD1, MBD2, MBD3, and MBD4 are members of a protein family that share the methyl-CpG-binding domain (MBD). The MBD, consists of about 70 residues and is defined as the minimal region required for binding to methylated DNA by a methyl-CpG-binding protein which binds specifically to methylated DNA. The MBD can recognize a single symmetrically methylated CpG either as naked DNA or within chromatin. MeCP2, MBD1 and MBD2 (and likely MBD3) form complexes with histone deacetylase and are involved in histone deacetylase-dependent repression of transcription. MBD4 is an endonuclease that forms a complex with the DNA mismatch-repair protein MLH1.
Probab=20.79 E-value=1.6e+02 Score=20.44 Aligned_cols=29 Identities=10% Similarity=0.111 Sum_probs=25.5
Q ss_pred CCcEEEEEEEcCCCEEEcCHHHHHHHHHHH
Q 025716 202 GKNIEVAVMTREKGLKQLDEAEIDAMVAEI 231 (249)
Q Consensus 202 ~~~iei~~v~~~g~~~~~~~~ei~~~l~~i 231 (249)
....++.++++.| .+.-+..||..||..-
T Consensus 23 ~~k~DvyY~sP~G-kk~RS~~ev~~yL~~~ 51 (77)
T cd01396 23 AGKFDVYYISPTG-KKFRSKVELARYLEKN 51 (77)
T ss_pred CCcceEEEECCCC-CEEECHHHHHHHHHhC
Confidence 4678999999998 8889999999999873
No 81
>PRK06361 hypothetical protein; Provisional
Probab=20.78 E-value=1.1e+02 Score=25.05 Aligned_cols=31 Identities=32% Similarity=0.447 Sum_probs=28.4
Q ss_pred cccCCCCcchhhhhHHHHHccCCcEEEEEeCC
Q 025716 9 TVFSPDGHLFQVEYALEAVRKGNAAVGVRGTD 40 (249)
Q Consensus 9 ~~fsp~G~l~Qveya~kav~~G~t~igi~~~d 40 (249)
|.|| +|+.---|++..|...|-..|||+...
T Consensus 3 t~~s-dg~~~~~e~v~~A~~~Gl~~i~iTDH~ 33 (212)
T PRK06361 3 TIFS-DGELIPSELVRRARVLGYRAIAITDHA 33 (212)
T ss_pred cccc-CCCCCHHHHHHHHHHcCCCEEEEecCC
Confidence 6788 899999999999999999999999885
No 82
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=20.70 E-value=1.2e+02 Score=24.78 Aligned_cols=35 Identities=31% Similarity=0.358 Sum_probs=25.7
Q ss_pred cCCCCcchhhhhHHH-HHccCCcEEEEEeCCEEEEE
Q 025716 11 FSPDGHLFQVEYALE-AVRKGNAAVGVRGTDTIVLG 45 (249)
Q Consensus 11 fsp~G~l~Qveya~k-av~~G~t~igi~~~dgVvla 45 (249)
+|+.|+-.-|=-|.+ |..+|-++||+.++||=-++
T Consensus 116 ISTSGNS~nVl~Ai~~Ak~~gm~vI~ltG~~GG~~~ 151 (176)
T COG0279 116 ISTSGNSKNVLKAIEAAKEKGMTVIALTGKDGGKLA 151 (176)
T ss_pred EeCCCCCHHHHHHHHHHHHcCCEEEEEecCCCcccc
Confidence 677776665555554 45789999999999976654
No 83
>KOG0205 consensus Plasma membrane H+-transporting ATPase [Inorganic ion transport and metabolism]
Probab=20.02 E-value=9.2e+02 Score=24.44 Aligned_cols=96 Identities=22% Similarity=0.381 Sum_probs=54.5
Q ss_pred EEEEeccCCcccccCCcccceEEecCCEE-EEEecChhhHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHhhhc
Q 025716 43 VLGVEKKSTVKLQDSRSVRKIVSLDNHIA-LACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQ 121 (249)
Q Consensus 43 vla~d~~~~~~l~~~~~~~Ki~~I~~~i~-~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~t~ 121 (249)
||.+||.-+- ..+| ..+++|.. +.+.|...|--.|.--... +..+...++ ..+..+|++-...
T Consensus 329 VLCSDKTGTL------TlNk-LSvdknl~ev~v~gv~~D~~~L~A~rAs-----r~en~DAID-~A~v~~L~dPKea--- 392 (942)
T KOG0205|consen 329 VLCSDKTGTL------TLNK-LSVDKNLIEVFVKGVDKDDVLLTAARAS-----RKENQDAID-AAIVGMLADPKEA--- 392 (942)
T ss_pred EEeecCcCce------eecc-eecCcCcceeeecCCChHHHHHHHHHHh-----hhcChhhHH-HHHHHhhcCHHHH---
Confidence 5566664322 1233 45677777 8889999998766554332 333333333 3445555543211
Q ss_pred cCCCccceeEEEEEeeeCCCCCceEEEECCCCceecc
Q 025716 122 SGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAW 158 (249)
Q Consensus 122 ~~~~rP~gv~~ivaG~d~~~~gp~Ly~iDp~G~~~~~ 158 (249)
+.+.|- +=+--+||.+.+-.+|.+||+|.+.++
T Consensus 393 ra~ike----vhF~PFnPV~Krta~ty~d~dG~~~r~ 425 (942)
T KOG0205|consen 393 RAGIKE----VHFLPFNPVDKRTALTYIDPDGNWHRV 425 (942)
T ss_pred hhCceE----EeeccCCccccceEEEEECCCCCEEEe
Confidence 112111 112335777778999999999998775
Done!