Query 025716
Match_columns 249
No_of_seqs 122 out of 1151
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 16:03:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025716.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025716hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ryp_A 20S proteasome; multica 100.0 5E-63 1.7E-67 424.6 27.3 230 2-233 1-241 (243)
2 1iru_D 20S proteasome; cell cy 100.0 8.7E-64 3E-68 430.6 21.5 232 3-235 2-236 (248)
3 1ryp_D 20S proteasome; multica 100.0 4E-62 1.4E-66 418.5 29.6 232 3-235 1-238 (241)
4 1iru_C 20S proteasome; cell cy 100.0 4.7E-62 1.6E-66 422.7 26.2 234 2-236 3-245 (261)
5 1iru_B 20S proteasome; cell cy 100.0 7.9E-62 2.7E-66 414.7 26.8 228 1-231 2-232 (233)
6 3h4p_A Proteasome subunit alph 100.0 3.8E-63 1.3E-67 429.8 18.3 231 1-233 9-242 (264)
7 1iru_A 20S proteasome; cell cy 100.0 2.9E-61 9.8E-66 414.4 29.4 231 2-233 7-244 (246)
8 1j2p_A Alpha-ring, proteasome 100.0 7.4E-61 2.5E-65 411.8 31.1 233 3-238 7-243 (246)
9 1ryp_C 20S proteasome; multica 100.0 6.1E-61 2.1E-65 411.8 29.8 231 2-233 3-243 (244)
10 1ryp_E 20S proteasome; multica 100.0 3.1E-61 1.1E-65 413.2 26.4 230 5-235 1-239 (242)
11 1yar_A Proteasome alpha subuni 100.0 4.1E-61 1.4E-65 410.2 26.5 224 3-228 7-233 (233)
12 1iru_G 20S proteasome; cell cy 100.0 4.3E-61 1.5E-65 415.1 26.8 231 2-233 5-241 (254)
13 1iru_E 20S proteasome; cell cy 100.0 1.2E-60 4.1E-65 409.4 25.8 226 3-230 7-240 (241)
14 1ryp_B 20S proteasome; multica 100.0 3.6E-60 1.2E-64 408.5 28.5 228 2-230 3-249 (250)
15 1ryp_F 20S proteasome; multica 100.0 1.7E-60 5.9E-65 406.4 21.5 222 3-228 4-233 (233)
16 1iru_F 20S proteasome; cell cy 100.0 9.7E-60 3.3E-64 408.5 24.8 227 2-232 4-237 (263)
17 1ryp_G 20S proteasome; multica 100.0 6.8E-59 2.3E-63 399.1 29.7 224 2-228 2-235 (244)
18 3nzj_F Proteasome component C1 100.0 6.2E-59 2.1E-63 407.3 29.2 225 2-228 6-240 (288)
19 1q5q_A Proteasome alpha-type s 100.0 2.5E-52 8.6E-57 361.1 20.2 232 8-248 4-256 (259)
20 3mi0_A Proteasome subunit alph 100.0 1.8E-49 6.3E-54 340.7 26.8 209 19-236 16-242 (248)
21 3h4p_a Proteasome subunit beta 100.0 1.2E-47 4E-52 324.3 21.7 206 30-241 1-212 (219)
22 1yar_H Proteasome beta subunit 100.0 9.5E-46 3.3E-50 312.2 25.0 200 25-232 3-208 (217)
23 1j2q_H Proteasome beta subunit 100.0 1.7E-45 5.9E-50 307.2 23.4 195 31-232 1-201 (202)
24 3nzj_K Proteasome component PR 100.0 9.8E-46 3.3E-50 323.5 22.6 208 22-235 67-279 (287)
25 1q5r_H Proteasome beta-type su 100.0 1.3E-45 4.4E-50 323.8 22.3 212 23-237 58-288 (294)
26 2jay_A Proteasome; hydrolase; 100.0 1.8E-45 6.2E-50 322.6 22.5 229 3-235 24-278 (291)
27 1ryp_L 20S proteasome; multica 100.0 7E-45 2.4E-49 305.7 22.9 199 31-235 1-204 (212)
28 1iru_L 20S proteasome; cell cy 100.0 8.1E-45 2.8E-49 303.6 21.5 198 31-235 1-203 (204)
29 1q5q_H Proteasome beta-type su 100.0 1.9E-44 6.5E-49 307.7 24.0 202 31-235 1-221 (235)
30 1iru_N 20S proteasome; cell cy 100.0 6E-45 2E-49 307.6 16.8 199 24-227 2-208 (219)
31 1iru_H 20S proteasome; cell cy 100.0 2.8E-44 9.4E-49 300.5 19.5 194 31-230 1-200 (205)
32 1ryp_N 20S proteasome; multica 100.0 6.8E-45 2.3E-49 310.0 14.5 200 24-227 2-217 (233)
33 1ryp_K 20S proteasome; multica 100.0 3.8E-43 1.3E-47 292.1 23.0 189 30-221 1-194 (198)
34 1ryp_H 20S proteasome; multica 100.0 2.7E-43 9.3E-48 294.6 20.7 184 24-214 3-191 (205)
35 1iru_M 20S proteasome; cell cy 100.0 1.5E-42 5.3E-47 291.6 23.9 186 27-218 6-205 (213)
36 3nzj_H Proteasome component PU 100.0 1.8E-42 6.1E-47 299.3 23.9 190 24-220 23-217 (261)
37 1g0u_M Proteasome component PR 100.0 5E-44 1.7E-48 310.3 13.9 205 19-227 30-250 (266)
38 3unf_H Proteasome subunit beta 100.0 2.4E-42 8E-47 294.4 21.5 187 31-225 1-192 (234)
39 1iru_K 20S proteasome; cell cy 100.0 8E-42 2.7E-46 284.8 22.8 187 30-220 1-192 (201)
40 1ryp_M 20S proteasome; multica 100.0 1.2E-41 4.1E-46 288.0 23.2 186 27-218 6-214 (222)
41 1iru_J 20S proteasome; cell cy 100.0 1.2E-41 4E-46 284.6 22.4 185 28-217 6-196 (205)
42 1ryp_J 20S proteasome; multica 100.0 2.9E-41 9.9E-46 282.0 24.6 185 27-217 5-195 (204)
43 1ryp_I 20S proteasome; multica 100.0 5E-41 1.7E-45 284.2 23.6 183 31-220 1-188 (222)
44 3unf_N Proteasome subunit beta 100.0 4.8E-42 1.6E-46 285.6 16.4 190 31-228 1-197 (199)
45 1iru_I 20S proteasome; cell cy 100.0 3.1E-40 1E-44 281.5 22.8 183 31-221 1-188 (234)
46 2z3b_A ATP-dependent protease 100.0 3.4E-34 1.2E-38 234.9 18.9 165 28-210 3-179 (180)
47 1g3k_A ATP-dependent protease 100.0 4.7E-33 1.6E-37 226.8 18.8 163 31-211 1-173 (174)
48 1m4y_A ATP-dependent protease 100.0 1.3E-32 4.3E-37 223.7 20.0 163 31-210 1-171 (171)
49 3rj2_X ORF158L protein, putati 51.5 3.1 0.0001 30.6 -0.1 17 2-18 53-69 (138)
50 4gof_A Small glutamine-rich te 44.5 51 0.0017 20.4 4.8 32 170-201 9-44 (52)
51 3jx9_A Putative phosphoheptose 36.6 20 0.00069 27.9 2.6 31 8-38 81-112 (170)
52 2hc5_A ORF 99, hypothetical pr 36.0 1.2E+02 0.0042 21.9 6.6 55 181-235 34-101 (117)
53 1hbx_G ETS-domain protein ELK- 32.0 33 0.0011 26.3 3.0 25 207-231 25-49 (157)
54 2lxb_A Small glutamine-rich te 31.7 89 0.003 20.8 4.7 33 169-201 13-49 (74)
55 3vxv_A Methyl-CPG-binding doma 31.5 69 0.0024 20.9 4.2 29 202-231 23-51 (69)
56 3c2i_A Methyl-CPG-binding prot 31.3 64 0.0022 22.7 4.2 29 202-231 41-69 (97)
57 4asv_A Small glutamine-rich te 30.9 78 0.0027 22.0 4.5 33 169-201 25-61 (92)
58 2yxo_A Histidinol phosphatase; 30.7 35 0.0012 27.6 3.3 32 9-40 8-39 (267)
59 1bc8_C SAP-1, protein (SAP-1 E 30.6 19 0.00066 25.2 1.4 26 207-232 24-49 (93)
60 1vd2_A Protein kinase C, IOTA 30.5 74 0.0025 21.9 4.4 50 180-233 24-76 (89)
61 1yo5_C SAM pointed domain cont 30.0 59 0.002 22.9 3.8 26 207-232 31-57 (97)
62 1fli_A FLI-1; transcription/DN 28.7 23 0.0008 25.0 1.5 26 207-232 25-50 (98)
63 4eo3_A Bacterioferritin comigr 27.0 28 0.00097 29.7 2.1 45 143-187 102-148 (322)
64 1awc_A Protein (GA binding pro 25.7 26 0.00091 25.3 1.4 26 207-232 20-45 (110)
65 4avp_A ETS translocation varia 23.3 55 0.0019 23.4 2.7 26 207-232 31-56 (106)
66 1wwx_A E74-like factor 5 ESE-2 22.5 61 0.0021 23.2 2.8 26 207-232 29-55 (107)
67 3jtg_A ETS-related transcripti 21.1 1.1E+02 0.0036 21.8 3.8 26 207-232 25-51 (103)
No 1
>1ryp_A 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_G* 1g65_G 1vsy_A 2f16_G* 2fak_G* 2fny_G* 2gpl_G* 3d29_G* 3dy3_G* 3dy4_G* 3e47_G* 3gpj_G* 3gpt_G* 3gpw_G* 3hye_G* 3l5q_A 3mg0_G* 3mg4_G* 3oeu_G* 3oev_G* ...
Probab=100.00 E-value=5e-63 Score=424.62 Aligned_cols=230 Identities=32% Similarity=0.529 Sum_probs=222.0
Q ss_pred CCCCCCCcccCCCCcchhhhhHHHHHcc-CCcEEEEEeCCEEEEEEeccCCcccccCCcccceEEecCCEEEEEecChhh
Q 025716 2 ARYDRAITVFSPDGHLFQVEYALEAVRK-GNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKAD 80 (249)
Q Consensus 2 ~~yd~~~~~fsp~G~l~Qveya~kav~~-G~t~igi~~~dgVvla~d~~~~~~l~~~~~~~Ki~~I~~~i~~~~sG~~~D 80 (249)
++||+.+|+|||||||+|||||+||+++ |+|+|||+++||||||+|+|.+.+++.+++.+||++|++|++|+++|+.+|
T Consensus 1 ~~yd~~~t~fsp~Grl~QvEYA~~av~~~Gtt~vgi~~~dgVvlaad~r~~~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD 80 (243)
T 1ryp_A 1 AGYDRHITIFSPEGRLYQVEYAFKATNQTNINSLAVRGKDCTVVISQKKVPDKLLDPTTVSYIFCISRTIGMVVNGPIPD 80 (243)
T ss_dssp CGGGGTSSSCCTTSCCHHHHHHHHHTTTTCCCEEEEECSSEEEEEEECCCCCTTBCGGGCCSEEECSSSCEEEEESCHHH
T ss_pred CCCCCCCceECCCCeeHHHHHHHHHHhcCCCcEEEEEeCCEEEEEEEecCCccccCCCcCCceEEECCCEEEEEEecHHH
Confidence 4799999999999999999999999999 999999999999999999999988888889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHhhhccCCCccceeEEEEEeeeCCCCCceEEEECCCCceeccce
Q 025716 81 ARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKA 160 (249)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~t~~~~~rP~gv~~ivaG~d~~~~gp~Ly~iDp~G~~~~~~~ 160 (249)
++.|+++++.++..|+++++++++++.+++++++++|.|+++++.|||+|++||||||+ ++||+||.+||+|++.++++
T Consensus 81 ~~~l~~~~r~~~~~~~~~~~~~~~v~~la~~l~~~l~~y~~~~~~rP~~v~~lvaG~D~-~~gp~Ly~~dp~G~~~~~~~ 159 (243)
T 1ryp_A 81 ARNAALRAKAEAAEFRYKYGYDMPCDVLAKRMANLSQIYTQRAYMRPLGVILTFVSVDE-ELGPSIYKTDPAGYYVGYKA 159 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBTTSCCCSCEEEEEEEET-TTEEEEEEECTTSCEEEBSE
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccCCccccceEEEEEEEcC-CCCcEEEEEcCCCCEEEEEE
Confidence 99999999999999999999999999999999999999999988999999999999996 58999999999999999999
Q ss_pred EeecCCchHHHHHHHhhhcc-------CCc-HHHHHHHHHHHHHHHhc--CCCcEEEEEEEcCCCEEEcCHHHHHHHHHH
Q 025716 161 NATGRNSNSMREFLEKNYKE-------TSG-QETIKLAIRALLEVVES--GGKNIEVAVMTREKGLKQLDEAEIDAMVAE 230 (249)
Q Consensus 161 ~aiG~g~~~a~~~Le~~~~~-------~~s-eeai~la~~~l~~~~~~--~~~~iei~~v~~~g~~~~~~~~ei~~~l~~ 230 (249)
+++|+++..++++||+.|++ +|+ +||++++++||..+.++ ++++++|++|+++| +++++++||++++.+
T Consensus 160 ~a~G~gs~~a~~~Le~~~~~~~~~~~~~ms~eea~~l~~~al~~~~~rd~s~~~iev~vi~~~g-~~~l~~~ei~~~~~~ 238 (243)
T 1ryp_A 160 TATGPKQQEITTNLENHFKKSKIDHINEESWEKVVEFAITHMIDALGTEFSKNDLEVGVATKDK-FFTLSAENIEERLVA 238 (243)
T ss_dssp EEESTTHHHHHHHHHHHHHHHCSSSCCCSSHHHHHHHHHHHHHHHHTCCCCTTSEEEEEEETTE-EEECCHHHHHHHHHH
T ss_pred EEECCCcHHHHHHHHHHhhhcccccccCCCHHHHHHHHHHHHHHHhcccCCCCcEEEEEEECCC-eEECCHHHHHHHHHH
Confidence 99999999999999999999 999 99999999999999875 47799999999998 999999999999999
Q ss_pred HHH
Q 025716 231 IEA 233 (249)
Q Consensus 231 i~~ 233 (249)
|++
T Consensus 239 ~~~ 241 (243)
T 1ryp_A 239 IAE 241 (243)
T ss_dssp HTT
T ss_pred hhc
Confidence 865
No 2
>1iru_D 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unf_C* 3une_C* 3unh_C 3unb_C*
Probab=100.00 E-value=8.7e-64 Score=430.57 Aligned_cols=232 Identities=72% Similarity=1.095 Sum_probs=224.1
Q ss_pred CCCCCCcccCCCCcchhhhhHHHHHccCCcEEEEEeCCEEEEEEeccCCcccccCCcccceEEecCCEEEEEecChhhHH
Q 025716 3 RYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADAR 82 (249)
Q Consensus 3 ~yd~~~~~fsp~G~l~Qveya~kav~~G~t~igi~~~dgVvla~d~~~~~~l~~~~~~~Ki~~I~~~i~~~~sG~~~D~~ 82 (249)
+||+.+|+|||||||+|||||++|+++|+|+|||+++||||||+|+|.+++++.+++.+||++|++|++++++|+.+|++
T Consensus 2 ~yd~~~t~fsp~Grl~QvEYA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~l~~~~~~~KI~~i~~~i~~~~aG~~aD~~ 81 (248)
T 1iru_D 2 SYDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGRDIVVLGVEKKSVAKLQDERTVRKICALDDNVCMAFAGLTADAR 81 (248)
T ss_dssp CCCCCCSCCCTTSCCHHHHHHHHHHHTSCCEEEECCSSEEEEEECCCCCCSSSCGGGGCSEEESSSSCEEEEEECHHHHH
T ss_pred CccCCCceECCCCcchHHHHHHHHHHcCCCEEEEEeCCEEEEEEeecccccCccCCCCCcEEEEcCCEEEEEeecHHHHH
Confidence 49999999999999999999999999999999999999999999999999887778899999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHhhhccCCCccceeEEEEEeeeCCCCCceEEEECCCCceeccceEe
Q 025716 83 VLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANA 162 (249)
Q Consensus 83 ~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~t~~~~~rP~gv~~ivaG~d~~~~gp~Ly~iDp~G~~~~~~~~a 162 (249)
.|+++++.+++.|+++++++++++.+++++++++|.|+++++.|||+|++||||||+ +++|+||.+||+|++.++++++
T Consensus 82 ~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~-~~gp~Ly~idp~G~~~~~~~~a 160 (248)
T 1iru_D 82 IVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDF-DGTPRLYQTDPSGTYHAWKANA 160 (248)
T ss_dssp HHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHTTSBTTBCCCCEEEEEEEECS-SSCEEEEEECTTSCEEEBSEEE
T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccCCcccccEEEEEEEEeC-CCCcEEEEEcCCCcEEEeeEEE
Confidence 999999999999999999999999999999999999999989999999999999996 6799999999999999999999
Q ss_pred ecCCchHHHHHHHhhhccCC--c-HHHHHHHHHHHHHHHhcCCCcEEEEEEEcCCCEEEcCHHHHHHHHHHHHHHH
Q 025716 163 TGRNSNSMREFLEKNYKETS--G-QETIKLAIRALLEVVESGGKNIEVAVMTREKGLKQLDEAEIDAMVAEIEAKK 235 (249)
Q Consensus 163 iG~g~~~a~~~Le~~~~~~~--s-eeai~la~~~l~~~~~~~~~~iei~~v~~~g~~~~~~~~ei~~~l~~i~~~~ 235 (249)
+|+++..++++||+.|+++| + +||++++++||..+.+.++++++|++|+++|.+++++++||++++.++.+.+
T Consensus 161 iG~gs~~a~~~Le~~~~~~m~~s~eea~~la~~al~~~~~~sg~~i~v~vi~~~g~~~~l~~~ei~~~~~~~~~~~ 236 (248)
T 1iru_D 161 IGRGAKSVREFLEKNYTDEAIETDDLTIKLVIKALLEVVQSGGKNIELAVMRRDQSLKILNPEEIEKYVAEIEKEK 236 (248)
T ss_dssp ESTTHHHHHHHHTTTCCSSTTCSHHHHHHHHHHHHHTTSCTTSTTCCEEEEESSSCEECCCHHHHHHHTTTTTTTT
T ss_pred ECCCcHHHHHHHHHhhcccccCCHHHHHHHHHHHHHHHHcCCCCcEEEEEEECCCcEEECCHHHHHHHHHHHHhcc
Confidence 99999999999999999999 9 9999999999999988778899999999998899999999999999997654
No 3
>1ryp_D 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_C* 1g65_C 2f16_C* 2fak_C* 2fny_C* 2gpl_C* 3d29_C* 3dy3_C* 3dy4_C* 3e47_C* 3gpj_C* 3gpt_C* 3gpw_C* 3hye_C* 3mg0_C* 3mg4_C* 3oeu_C* 3oev_C* 3okj_C* 3shj_C* ...
Probab=100.00 E-value=4e-62 Score=418.51 Aligned_cols=232 Identities=58% Similarity=1.015 Sum_probs=221.9
Q ss_pred CCCCCCcccCCCCcchhhhhHHHHHccCCcEEEEEeCCEEEEEEeccCCcccccC-CcccceEEecCCEEEEEecChhhH
Q 025716 3 RYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDS-RSVRKIVSLDNHIALACAGLKADA 81 (249)
Q Consensus 3 ~yd~~~~~fsp~G~l~Qveya~kav~~G~t~igi~~~dgVvla~d~~~~~~l~~~-~~~~Ki~~I~~~i~~~~sG~~~D~ 81 (249)
+||+.+|+|||||||+|||||++|+++|+|+|||+++||||||+|+|.+++++.. ++.+||++|++|++++++|+.+|+
T Consensus 1 ~yd~~~t~fsp~Grl~QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~ 80 (241)
T 1ryp_D 1 GYDRALSIFSPDGHIFQVEYALEAVKRGTCAVGVKGKNCVVLGCERRSTLKLQDTRITPSKVSKIDSHVVLSFSGLNADS 80 (241)
T ss_dssp CCCCCCSCCBTTTBCHHHHHHHHHHTTSCCEEEEECSSCEEEEEECCCSSCCBCTTTSCCSEEEEETTEEEEEEECHHHH
T ss_pred CCCCCceeECCCCcchHHHHHHHHHHcCCCEEEEEeCCEEEEEEeeccCccCccccCCcCcEEEecCCEEEEEeecHHHH
Confidence 6999999999999999999999999999999999999999999999999976554 489999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHhhhccCCCccceeEEEEEeeeCCC-CCceEEEECCCCceeccce
Q 025716 82 RVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYT-GVPSLYQTDPSGTFSAWKA 160 (249)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~t~~~~~rP~gv~~ivaG~d~~~-~gp~Ly~iDp~G~~~~~~~ 160 (249)
+.|.++++.+++.|+++++++++++.+++++++++|.|+++++.|||+|++||||||+ + ++|+||.+||+|++.++++
T Consensus 81 ~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~-~~~gp~Ly~idp~G~~~~~~~ 159 (241)
T 1ryp_D 81 RILIEKARVEAQSHRLTLEDPVTVEYLTRYVAGVQQRYTQSGGVRPFGVSTLIAGFDP-RDDEPKLYQTEPSGIYSSWSA 159 (241)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSSTTBCCCSEEEEEEECCT-TCCSCEEEEECTTSCEEEBSE
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHccCCCCCCcceeeEEEEEcC-CCCCeeEEEECCCCCEEEeee
Confidence 9999999999999999999999999999999999999999989999999999999995 4 8999999999999999999
Q ss_pred EeecCCchHHHHHHHhhh---ccCCc-HHHHHHHHHHHHHHHhcCCCcEEEEEEEcCCCEEEcCHHHHHHHHHHHHHHH
Q 025716 161 NATGRNSNSMREFLEKNY---KETSG-QETIKLAIRALLEVVESGGKNIEVAVMTREKGLKQLDEAEIDAMVAEIEAKK 235 (249)
Q Consensus 161 ~aiG~g~~~a~~~Le~~~---~~~~s-eeai~la~~~l~~~~~~~~~~iei~~v~~~g~~~~~~~~ei~~~l~~i~~~~ 235 (249)
+++|+|+..++++||+.| +++|+ +||++++++||..+.+.++++++|++|+++|.+++++++||++++.++++++
T Consensus 160 ~aiG~gs~~a~~~Le~~~~~~~~~ms~eea~~l~~~al~~~~~~sg~~i~v~vi~~~~~~~~l~~~ei~~~~~~~~~~~ 238 (241)
T 1ryp_D 160 QTIGRNSKTVREFLEKNYDRKEPPATVEECVKLTVRSLLEVVQTGAKNIEITVVKPDSDIVALSSEEINQYVTQIEQEK 238 (241)
T ss_dssp EEESTTHHHHHHHHHTTCCTTSCCCSHHHHHHHHHHHHHHHHCSCSTTEEEEEEETTTEEEECCHHHHHHHHHHHTHHH
T ss_pred EEECCCcHHHHHHHHHhhhcccCCCCHHHHHHHHHHHHHHHhcCCCCcEEEEEEECCCcEEECCHHHHHHHHHHHhhhh
Confidence 999999999999999999 99999 9999999999999988778899999999987799999999999999996654
No 4
>1iru_C 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_B* 3une_B 3unf_B* 3unh_B
Probab=100.00 E-value=4.7e-62 Score=422.67 Aligned_cols=234 Identities=36% Similarity=0.647 Sum_probs=221.3
Q ss_pred CCCCCCCcccCCCCcchhhhhHHHHHccCCcEEEEEeCCEEEEEEeccCCccccc-CCcccceEEecCCEEEEEecChhh
Q 025716 2 ARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQD-SRSVRKIVSLDNHIALACAGLKAD 80 (249)
Q Consensus 2 ~~yd~~~~~fsp~G~l~Qveya~kav~~G~t~igi~~~dgVvla~d~~~~~~l~~-~~~~~Ki~~I~~~i~~~~sG~~~D 80 (249)
++||+.+|+|||||||+|||||++|+++|+|+|||+++||||||+|+|.++++.. +++.+||++|++|++++++|+.+|
T Consensus 3 ~~yd~~~t~fsp~Grl~QvEYA~~av~~Gtt~vgi~~~dgVVlaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD 82 (261)
T 1iru_C 3 RRYDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGITSD 82 (261)
T ss_dssp TTTCCCTTCCCTTSCCHHHHHHHHHHTTSCCEEEEBCSSEEEEEECCCCCCTTBCCCSSCSSEEECSSSEEEEEEECHHH
T ss_pred CccCCCCccCCCCCeehHHHhHHHHHhcCCcEEEEEeCCEEEEEEecccCCcccccCCCCccEEEecCCEEEEEeEcHHH
Confidence 4699999999999999999999999999999999999999999999999987654 445999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHhhhccCCCccceeEEEEEeeeCCCCCceEEEECCCCceeccce
Q 025716 81 ARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKA 160 (249)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~t~~~~~rP~gv~~ivaG~d~~~~gp~Ly~iDp~G~~~~~~~ 160 (249)
++.|+++++.++..|+++++++++++.+++++++++|.|+++++.|||+|++||||||+ ++||+||.+||+|++.++++
T Consensus 83 ~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~-~~gp~Ly~idp~G~~~~~~~ 161 (261)
T 1iru_C 83 ANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDK-HYGFQLYQSDPSGNYGGWKA 161 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTBSSCCCCCEEEEEEEEET-TTEEEEEEEETTTEEEECSE
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccccCcCcceEEEEEEEEeC-CCCcEEEEECCCceEEeeee
Confidence 99999999999999999999999999999999999999999999999999999999996 67999999999999999999
Q ss_pred EeecCCchHHHHHHHhhhcc-CCc-HHHHHHHHHHHHHHHhc---CCCcEEEEEEEcCCC---EEEcCHHHHHHHHHHHH
Q 025716 161 NATGRNSNSMREFLEKNYKE-TSG-QETIKLAIRALLEVVES---GGKNIEVAVMTREKG---LKQLDEAEIDAMVAEIE 232 (249)
Q Consensus 161 ~aiG~g~~~a~~~Le~~~~~-~~s-eeai~la~~~l~~~~~~---~~~~iei~~v~~~g~---~~~~~~~ei~~~l~~i~ 232 (249)
+++|+|+..++++|++.|++ +|+ +||++++++||..+.++ ++.+++|++|+++|. |++++++||++++.++.
T Consensus 162 ~aiGsgs~~a~~~Le~~~~~~~ms~eeA~~la~~al~~~~~~d~~sg~~i~v~vi~~~~~~~~~~~l~~~ei~~~l~~~~ 241 (261)
T 1iru_C 162 TCIGNNSAAAVSMLKQDYKEGEMTLKSALALAIKVLNKTMDVSKLSAEKVEIATLTRENGKTVIRVLKQKEVEQLIKKHE 241 (261)
T ss_dssp EEESTTTTHHHHHHHHHCCTTCCCHHHHHHHHHHHHHHSSSCTTCCSTTCEEEEEECCSSSCEEEECCHHHHHHHHHHHH
T ss_pred EEeCcccHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEEcCCCeeeEEECCHHHHHHHHHHHH
Confidence 99999999999999999999 999 99999999999999875 477999999999874 89999999999999997
Q ss_pred HHHH
Q 025716 233 AKKA 236 (249)
Q Consensus 233 ~~~~ 236 (249)
+.+.
T Consensus 242 ~~~~ 245 (261)
T 1iru_C 242 EEEA 245 (261)
T ss_dssp TTTT
T ss_pred hchh
Confidence 5443
No 5
>1iru_B 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_A* 3une_A 3unf_A* 3unh_A
Probab=100.00 E-value=7.9e-62 Score=414.66 Aligned_cols=228 Identities=41% Similarity=0.680 Sum_probs=219.5
Q ss_pred CCCCCCCCcccCCCCcchhhhhHHHHHccCCcEEEEEeCCEEEEEEeccCCcccccCCcccceEEecCCEEEEEecChhh
Q 025716 1 MARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKAD 80 (249)
Q Consensus 1 ~~~yd~~~~~fsp~G~l~Qveya~kav~~G~t~igi~~~dgVvla~d~~~~~~l~~~~~~~Ki~~I~~~i~~~~sG~~~D 80 (249)
.++||+.+|+|||||||+|||||++|+++|+|+|||+++||||||+|+|.+++++.+++.+||++|++|++++++|+.+|
T Consensus 2 ~~~yd~~~t~fsp~Grl~QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD 81 (233)
T 1iru_B 2 ERGYSFSLTTFSPSGKLVQIEYALAAVAGGAPSVGIKAANGVVLATEKKQKSILYDERSVHKVEPITKHIGLVYSGMGPD 81 (233)
T ss_dssp CCCCCSBSCCCCTTSCCHHHHHHHHHHHTSCCEEEEECSSCEEEEEECCCCCSSBCSTTCCSSEESSSSEEEEEEECHHH
T ss_pred CCCccCCceeECCCCeEehhHhHHHHHHcCCcEEEEEeCCEEEEEEEecCCccccccccCCeEEEECCCEEEEEEEccHH
Confidence 36899999999999999999999999999999999999999999999999888888889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHhhhccCCCccceeEEEEEeeeCCCCCceEEEECCCCceeccce
Q 025716 81 ARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKA 160 (249)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~t~~~~~rP~gv~~ivaG~d~~~~gp~Ly~iDp~G~~~~~~~ 160 (249)
++.|.++++.+++.|+++++++++++.+++++++++|.|+++++.|||+|++|||||| ++||+||.+||+|++.++++
T Consensus 82 ~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~y~~~~~~rP~~v~~lvaG~D--~~gp~Ly~id~~G~~~~~~~ 159 (233)
T 1iru_B 82 YRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWN--EGRPYLFQSDPSGAYFAWKA 159 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTSBTBCCCSEEEEEEEEC--SSSEEEEEECTTSCEEEBSE
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCcCCCCCcEEEEEEEEEe--CCCCeEEEECCCCCEEEeeE
Confidence 9999999999999999999999999999999999999999998999999999999999 57899999999999999999
Q ss_pred EeecCCchHHHHHHHhhhccCCc-HHHHHHHHHHHHHHHhc--CCCcEEEEEEEcCCCEEEcCHHHHHHHHHHH
Q 025716 161 NATGRNSNSMREFLEKNYKETSG-QETIKLAIRALLEVVES--GGKNIEVAVMTREKGLKQLDEAEIDAMVAEI 231 (249)
Q Consensus 161 ~aiG~g~~~a~~~Le~~~~~~~s-eeai~la~~~l~~~~~~--~~~~iei~~v~~~g~~~~~~~~ei~~~l~~i 231 (249)
+++|+|+..++++||+.|+++|+ +||++++++||..+.++ ++.+++|++|+++| +++++++||++++++|
T Consensus 160 ~aiG~gs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~d~sg~~i~v~vi~~~g-~~~l~~~ei~~~~~~~ 232 (233)
T 1iru_B 160 TAMGKNYVNGKTFLEKRYNEDLELEDAIHTAILTLKESFEGQMTEDNIEVGICNEAG-FRRLTPTEVKDYLAAI 232 (233)
T ss_dssp EEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHTTCCSCCCSSSEEEEEEETTE-EEECCHHHHHHHHTTC
T ss_pred EEECCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhccCCCCCEEEEEEECCC-EEECCHHHHHHHHHhc
Confidence 99999999999999999999999 99999999999999875 46799999999998 9999999999998754
No 6
>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=3.8e-63 Score=429.81 Aligned_cols=231 Identities=44% Similarity=0.729 Sum_probs=216.0
Q ss_pred CCCCCCCCcccCCCCcchhhhhHHHHHccCCcEEEEEeCCEEEEEEeccCCcccccCCcccceEEecCCEEEEEecChhh
Q 025716 1 MARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKAD 80 (249)
Q Consensus 1 ~~~yd~~~~~fsp~G~l~Qveya~kav~~G~t~igi~~~dgVvla~d~~~~~~l~~~~~~~Ki~~I~~~i~~~~sG~~~D 80 (249)
+++||+.+|+|||||||+|||||++|+++|+|+|||+++||||||+|+|.+++++.+++.+||++|++|++|+++|+.+|
T Consensus 9 ~~~yd~~~t~fSp~Grl~QvEYA~~av~~Gtt~vgi~~~dgVVlaaD~r~~~~li~~~~~~KI~~i~d~i~~~~aG~~aD 88 (264)
T 3h4p_A 9 PSAYDRAITVFSPEGRLYQVEYAREAVRRGTTAIGIACKDGVVLAVDRRITSKLVKIRSIEKIFQIDDHVAAATSGLVAD 88 (264)
T ss_dssp -------CCCCCSSSSCHHHHHHHHHHHHSCCEEEECCSSEEEEEEECCCCSTTBCTTTCCCEEEEETTEEEEEEECSHH
T ss_pred ccccCCCcceECCCCeeHHHHhHHHHHhcCCcEEEEEECCEEEEEEecCccCCccccCccccEEEecCcEEEEeccchHH
Confidence 36799999999999999999999999999999999999999999999999998888889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHhhhccCCCccceeEEEEEeeeCCCCCceEEEECCCCceeccce
Q 025716 81 ARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKA 160 (249)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~t~~~~~rP~gv~~ivaG~d~~~~gp~Ly~iDp~G~~~~~~~ 160 (249)
++.|+++++.+++.|+++++++++++.+++++++++|.|+++++.|||+|++|||||| ++||+||.+||+|++.++++
T Consensus 89 ~~~l~~~~r~~~~~y~~~~~~~i~v~~la~~l~~~~~~yt~~~~~rP~~v~~lvaG~D--~~gp~Ly~iDp~G~~~~~~~ 166 (264)
T 3h4p_A 89 ARVLIDRARLEAQIYRLTYGEEISIEMLAKKICDIKQAYTQHGGVRPFGVSLLIAGID--KNEARLFETDPSGALIEYKA 166 (264)
T ss_dssp HHHHHTTHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHTTSBSSCCCCSEEEEEEEEE--TTEEEEEEECTTCCCEEESE
T ss_pred HHHHHHHHHHHHHhhHHhcCCCCCHHHHHHHHHHHHHHHhhccCCCCeeEEEEEEEEe--CCcCEEEEECCCceEEecCe
Confidence 9999999999999999999999999999999999999999999999999999999999 47999999999999999999
Q ss_pred EeecCCchHHHHHHHhhhccCCc-HHHHHHHHHHHHHHHh-cCCCcEEEEEEEcC-CCEEEcCHHHHHHHHHHHHH
Q 025716 161 NATGRNSNSMREFLEKNYKETSG-QETIKLAIRALLEVVE-SGGKNIEVAVMTRE-KGLKQLDEAEIDAMVAEIEA 233 (249)
Q Consensus 161 ~aiG~g~~~a~~~Le~~~~~~~s-eeai~la~~~l~~~~~-~~~~~iei~~v~~~-g~~~~~~~~ei~~~l~~i~~ 233 (249)
+|+|+|+..++++|++.|+++|+ +||++++++||..+.+ .++++++|++|+++ +.|++++++||++++.++.+
T Consensus 167 ~aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~a~~~~sg~~iev~vi~~~~~~~~~l~~~ei~~~~~~~~~ 242 (264)
T 3h4p_A 167 TAIGSGRPVVMELLEKEYRDDITLDEGLELAITALTKANEDIKPENVDVCIITVKDAQFKKIPVEEIKKLIEKVKK 242 (264)
T ss_dssp EEESTTHHHHTTTHHHHCCTTCCSHHHHHHHHHHHHHHSSSCCTTSEEEEEEETTTTEEEECCTTTTGGGTTTTTT
T ss_pred EEECCCHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEEEeCCCcEEECCHHHHHHHHHHHHH
Confidence 99999999999999999999999 9999999999999987 47789999999975 46999999999999998874
No 7
>1iru_A 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_G* 3une_G 3unf_G* 3unh_G
Probab=100.00 E-value=2.9e-61 Score=414.37 Aligned_cols=231 Identities=36% Similarity=0.593 Sum_probs=221.8
Q ss_pred CCCCCCCcccCCCCcchhhhhHHHHHcc-CCcEEEEEeCCEEEEEEeccCCcccccCCcccceEEecCCEEEEEecChhh
Q 025716 2 ARYDRAITVFSPDGHLFQVEYALEAVRK-GNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKAD 80 (249)
Q Consensus 2 ~~yd~~~~~fsp~G~l~Qveya~kav~~-G~t~igi~~~dgVvla~d~~~~~~l~~~~~~~Ki~~I~~~i~~~~sG~~~D 80 (249)
++||+.+|+|||||||+|||||++|+++ |+|+|||+++||||||+|+|.+.+++.+++.+||++|++|++++++|+.+|
T Consensus 7 ~~yd~~~t~fsp~Grl~QvEya~~av~~~Gtt~vgi~~~dgVvlaaD~r~~~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD 86 (246)
T 1iru_A 7 AGFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTHLFKITENIGCVMTGMTAD 86 (246)
T ss_dssp CTTTTTSSCCCTTSCCHHHHHHHHHHHTTCCEEEEEECSSEEEEEEECCCCCSSBCGGGCCSEEESSSSCEEEEEECHHH
T ss_pred CCcCCCCccCCCCCeehHHHHHHHHHhcCCCCEEEEEeCCEEEEEEeecCCCcccCCCccCceEEECCCEEEEEeccHHH
Confidence 4799999999999999999999999998 999999999999999999999888888889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHhhhccCCCccceeEEEEEeeeCCCCCceEEEECCCCceeccce
Q 025716 81 ARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKA 160 (249)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~t~~~~~rP~gv~~ivaG~d~~~~gp~Ly~iDp~G~~~~~~~ 160 (249)
++.|.++++.++..|+++++++++++.+++++++++|.|+++++.|||+|++||||||+ ++||+||.+||+|++.++++
T Consensus 87 ~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~y~~~~~~rp~~v~~lvaG~D~-~~gp~Ly~idp~G~~~~~~~ 165 (246)
T 1iru_A 87 SRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAEMRPLGCCMILIGIDE-EQGPQVYKCDPAGYYCGFKA 165 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBSSBCCCSEEEEEEEEET-TTEEEEEEECTTSCEEEBSE
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcCCCCCCcceEEEEEEEeC-CCCeEEEEEcCCeeEEEeeE
Confidence 99999999999999999999999999999999999999999989999999999999996 58999999999999999999
Q ss_pred EeecCCchHHHHHHHhhhcc--CCc-HHHHHHHHHHHHHHHhc--CCCcEEEEEEEcCCC-EEEcCHHHHHHHHHHHHH
Q 025716 161 NATGRNSNSMREFLEKNYKE--TSG-QETIKLAIRALLEVVES--GGKNIEVAVMTREKG-LKQLDEAEIDAMVAEIEA 233 (249)
Q Consensus 161 ~aiG~g~~~a~~~Le~~~~~--~~s-eeai~la~~~l~~~~~~--~~~~iei~~v~~~g~-~~~~~~~ei~~~l~~i~~ 233 (249)
+++|+|+..++++||+.|++ +|+ +||++++++||..+.++ ++.+++|++|+++|. |++++++||++++.+|++
T Consensus 166 ~aiG~gs~~a~~~Le~~~~~~~~ms~eea~~la~~al~~~~~rd~sg~~i~v~vi~~~g~~~~~l~~~ei~~~~~~~~~ 244 (246)
T 1iru_A 166 TAAGVKQTESTSFLEKKVKKKFDWTFEQTVETAITCLSTVLSIDFKPSEIEVGVVTVENPKFRILTEAEIDAHLVALAE 244 (246)
T ss_dssp EEEETTHHHHHHHHHHHTTSCCCCCHHHHHHHHHHHHHHHTTCCCCTTSEEEEEEETTEEEEEECCHHHHHHHHHHHHT
T ss_pred EEECCCcHHHHHHHHHhhcccCCCCHHHHHHHHHHHHHHHhcccCCCCcEEEEEEECCCCeEEECCHHHHHHHHHHhhc
Confidence 99999999999999999999 999 99999999999999875 477999999999985 899999999999999864
No 8
>1j2p_A Alpha-ring, proteasome alpha subunit; hydrolase; 2.60A {Archaeoglobus fulgidus} SCOP: d.153.1.4 PDB: 1j2q_A*
Probab=100.00 E-value=7.4e-61 Score=411.84 Aligned_cols=233 Identities=43% Similarity=0.711 Sum_probs=222.1
Q ss_pred CCCCCCcccCCCCcchhhhhHHHHHccCCcEEEEEeCCEEEEEEeccCCcccccCCcccceEEecCCEEEEEecChhhHH
Q 025716 3 RYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADAR 82 (249)
Q Consensus 3 ~yd~~~~~fsp~G~l~Qveya~kav~~G~t~igi~~~dgVvla~d~~~~~~l~~~~~~~Ki~~I~~~i~~~~sG~~~D~~ 82 (249)
+||+.+|+|||||||+|||||++|+++|+|+|||+++||||||+|+|.+.+++.+++.+||++|++|++++++|+.+|++
T Consensus 7 ~yd~~~t~fsp~Grl~QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~l~~~~~~~KI~~i~~~i~~~~aG~~aD~~ 86 (246)
T 1j2p_A 7 GYDRAITVFSPDGRLFQVEYAREAVKRGATAIGIKCKEGVILIADKRVGSKLLEKDTIEKIYKIDEHICAATSGLVADAR 86 (246)
T ss_dssp TSSSCTTCCCTTSCCHHHHHHHHHHHTSCCEEEEEETTEEEEEEECCCSCTTBCGGGCCSEEECSSSEEEEEEECHHHHH
T ss_pred CcCCCCceECCCCeehHHHhHHHHHHcCCcEEEEEECCEEEEEEeccCCccccccCccCcEEEECCCEEEEEeEccHHHH
Confidence 69999999999999999999999999999999999999999999999998887788999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHhhhccCCCccceeEEEEEeeeCCCCCceEEEECCCCceeccceEe
Q 025716 83 VLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANA 162 (249)
Q Consensus 83 ~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~t~~~~~rP~gv~~ivaG~d~~~~gp~Ly~iDp~G~~~~~~~~a 162 (249)
.|.++++.+++.|+++++++++++.+++++++++|.|+++++.|||+|++|||||| +||+||.+||+|++.+++++|
T Consensus 87 ~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~y~~~~~~rp~~v~~lvaG~D---~gp~Ly~idp~G~~~~~~~~a 163 (246)
T 1j2p_A 87 VLIDRARIEAQINRLTYDIPITVKELAKKICDFKQQYTQYGGVRPFGVSLLIAGVN---EVPKLYETDPSGALLEYKATA 163 (246)
T ss_dssp HHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHTTSBTTBCCCCEEEEEEEES---SSEEEEEECTTCCEEEBSEEE
T ss_pred HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCcccccEEEEEEEEC---CCCEEEEECCCceEEeeeEEE
Confidence 99999999999999999999999999999999999999999999999999999998 689999999999999999999
Q ss_pred ecCCchHHHHHHHhhhccCCc-HHHHHHHHHHHHHHHhc--CCCcEEEEEEE-cCCCEEEcCHHHHHHHHHHHHHHHHHH
Q 025716 163 TGRNSNSMREFLEKNYKETSG-QETIKLAIRALLEVVES--GGKNIEVAVMT-REKGLKQLDEAEIDAMVAEIEAKKAAA 238 (249)
Q Consensus 163 iG~g~~~a~~~Le~~~~~~~s-eeai~la~~~l~~~~~~--~~~~iei~~v~-~~g~~~~~~~~ei~~~l~~i~~~~~~~ 238 (249)
+|+|+..++++||+.|+++|+ +||++++++||..+.++ ++.+++|++|+ +++.+++++++||++++.++.+++.+.
T Consensus 164 iGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~~~sg~~i~v~vi~~~~~~~~~l~~~ei~~~~~~~~~~~~~~ 243 (246)
T 1j2p_A 164 IGMGRMAVTEFFEKEYRDDLSFDDAMVLGLVAMGLSIESELVPENIEVGYVKVDDRTFKEVSPEELKPYVERANERIREL 243 (246)
T ss_dssp ESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHTSCCCGGGEEEEEEETTTCCCEECCHHHHHHHHHHHHHHHHHH
T ss_pred ECCCcHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhccCCCCcEEEEEEEcCCCceEECCHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999 99999999999999874 57799999999 755699999999999999997655443
No 9
>1ryp_C 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_B* 1g65_B 2f16_B* 2fak_B* 2fny_B* 2gpl_B* 3d29_B* 3dy3_B* 3dy4_B* 3e47_B* 3gpj_B* 3gpt_B* 3gpw_B* 3hye_B* 3mg0_B* 3mg4_B* 3okj_B* 3shj_B* 3tdd_B* 3nzj_B* ...
Probab=100.00 E-value=6.1e-61 Score=411.85 Aligned_cols=231 Identities=37% Similarity=0.652 Sum_probs=221.1
Q ss_pred CCCCCCCcccCCCCcchhhhhHHHHHccCCcEEEEEeCCEEEEEEeccCCccccc-CCcccceEEecCCEEEEEecChhh
Q 025716 2 ARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQD-SRSVRKIVSLDNHIALACAGLKAD 80 (249)
Q Consensus 2 ~~yd~~~~~fsp~G~l~Qveya~kav~~G~t~igi~~~dgVvla~d~~~~~~l~~-~~~~~Ki~~I~~~i~~~~sG~~~D 80 (249)
++||+.+|+|||||||+|||||++|+++|+|+|||+++||||||+|+|.+++++. +++.+||++|++|++++++|+.+|
T Consensus 3 ~~yd~~~t~fsp~Grl~QvEyA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD 82 (244)
T 1ryp_C 3 RRYDSRTTIFSPEGRLYQVEYALESISHAGTAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLNDKIAVAVAGLTAD 82 (244)
T ss_dssp GGGCCCTTCBCTTSCBHHHHHHHHHHTTSCCEEEEEETTEEEEEEECSSCCSSBCSTTCCSSEEESSSSEEEEEEECHHH
T ss_pred CccCCCCceECcCCeeHHHHhHHHHHhcCCcEEEEEeCCEEEEEEeeccCCcCccCCCCCCcEEEECCCEEEEEEEcHHH
Confidence 3799999999999999999999999999999999999999999999999998766 788999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHhhhccCCCccceeEEEEEeeeCCCCCceEEEECCCCceeccce
Q 025716 81 ARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKA 160 (249)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~t~~~~~rP~gv~~ivaG~d~~~~gp~Ly~iDp~G~~~~~~~ 160 (249)
++.|.++++.+++.|+++++++++++.+++++++++|.|+++++.|||+|++||||||+ ++||+||.+||+|++.++++
T Consensus 83 ~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~-~~gp~Ly~idp~G~~~~~~~ 161 (244)
T 1ryp_C 83 AEILINTARIHAQNYLKTYNEDIPVEILVRRLSDIKQGYTQHGGLRPFGVSFIYAGYDD-RYGYQLYTSNPSGNYTGWKA 161 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBSSCCCCCEEEEEEEEET-TTEEEEEEECTTCCEEEBSE
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccCCccceEEEEEEEEEcC-CCCCEEEEECCCccEEeeeE
Confidence 99999999999999999999999999999999999999999999999999999999996 57999999999999999999
Q ss_pred EeecCCchHHHHHHHhhhccCCc-HHHHHHHHHHHHHHHhc---CCCcEEEEEEE--cCCC---EEEcCHHHHHHHHHHH
Q 025716 161 NATGRNSNSMREFLEKNYKETSG-QETIKLAIRALLEVVES---GGKNIEVAVMT--REKG---LKQLDEAEIDAMVAEI 231 (249)
Q Consensus 161 ~aiG~g~~~a~~~Le~~~~~~~s-eeai~la~~~l~~~~~~---~~~~iei~~v~--~~g~---~~~~~~~ei~~~l~~i 231 (249)
+++|+|+..++++||+.|+++|+ +||++++++||..+.++ ++.+++|++|+ ++|. +++++++||++++.+|
T Consensus 162 ~aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~rd~~sg~~i~v~vi~~~~~~~~~~~~~l~~~ei~~~~~~~ 241 (244)
T 1ryp_C 162 ISVGANTSAAQTLLQMDYKDDMKVDDAIELALKTLSKTTDSSALTYDRLEFATIRKGANDGEVYQKIFKPQEIKDILVKT 241 (244)
T ss_dssp EEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHCSSSSCCGGGEEEEEEECCSSSSSCEEEECCHHHHHHHHHHH
T ss_pred EEECCCcHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHhccccCCCCcEEEEEEEeecCCCceeEEECCHHHHHHHHHHh
Confidence 99999999999999999999999 99999999999999875 37799999999 9876 9999999999999988
Q ss_pred HH
Q 025716 232 EA 233 (249)
Q Consensus 232 ~~ 233 (249)
+.
T Consensus 242 ~~ 243 (244)
T 1ryp_C 242 GI 243 (244)
T ss_dssp TC
T ss_pred hc
Confidence 63
No 10
>1ryp_E 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_D* 1g65_D 2f16_D* 2fak_D* 2fny_D* 2gpl_D* 3d29_D* 3dy3_D* 3dy4_D* 3e47_D* 3gpj_D* 3gpt_D* 3gpw_D* 3hye_D* 3mg0_D* 3mg4_D* 3okj_D* 3shj_D* 3tdd_D* 2z5c_C ...
Probab=100.00 E-value=3.1e-61 Score=413.16 Aligned_cols=230 Identities=35% Similarity=0.633 Sum_probs=220.3
Q ss_pred CCCCcccCCCCcchhhhhHHHHHccCCcEEEEEeCCEEEEEEeccCCcccccCCcccceEEecCCEEEEEecChhhHHHH
Q 025716 5 DRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVL 84 (249)
Q Consensus 5 d~~~~~fsp~G~l~Qveya~kav~~G~t~igi~~~dgVvla~d~~~~~~l~~~~~~~Ki~~I~~~i~~~~sG~~~D~~~l 84 (249)
|+.+|+|||||||+|||||++|+++|+|+|||+++||||||+|+|.+++++.+++.+||++|++|++++++|+.+|++.|
T Consensus 1 d~~~t~fsp~Grl~QvEyA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l 80 (242)
T 1ryp_E 1 DRGVSTFSPEGRLFQVEYSLEAIKLGSTAIGIATKEGVVLGVEKRATSPLLESDSIEKIVEIDRHIGCAMSGLTADARSM 80 (242)
T ss_dssp CCCTTCBCTTSCBHHHHHHHHHHTTSCCEEEEECSSCEEEEEECCCSSTTBCGGGCCCEEEEETTEEEEEEESGGGHHHH
T ss_pred CCCCceECCCCcChHHHhHHHHHHcCCCEEEEEECCEEEEEEeecCCCcCccCccCCceEEEcCCEEEEEeecHHHHHHH
Confidence 78899999999999999999999999999999999999999999999987667889999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHhhhccCC------CccceeEEEEEeeeCCCCCceEEEECCCCceecc
Q 025716 85 INRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGG------VRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAW 158 (249)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~t~~~~------~rP~gv~~ivaG~d~~~~gp~Ly~iDp~G~~~~~ 158 (249)
+++++.+++.|+++++++++++.+++++++++|.|+++++ .|||+|++||||||+ ++||+||.+||+|++.++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~~~~l~~RP~~v~~lvaG~D~-~~gp~Ly~idp~G~~~~~ 159 (242)
T 1ryp_E 81 IEHARTAAVTHNLYYDEDINVESLTQSVCDLALRFGEGASGEERLMSRPFGVALLIAGHDA-DDGYQLFHAEPSGTFYRY 159 (242)
T ss_dssp HHHHHHHHHHHHHHHSSCCCHHHHHHHHHTTTTCCBSSCTTSCCCBSSCCSEEEEEEEEET-TTEEEEEEECTTSCEEEB
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccccCcccccccCcceEEEEEEEEeC-CCCCEEEEECCCCCEecc
Confidence 9999999999999999999999999999999999999888 899999999999996 679999999999999999
Q ss_pred ceEeecCCchHHHHHHHhhhccCCc-HHHHHHHHHHHHHHHhc--CCCcEEEEEEEcCCCEEEcCHHHHHHHHHHHHHHH
Q 025716 159 KANATGRNSNSMREFLEKNYKETSG-QETIKLAIRALLEVVES--GGKNIEVAVMTREKGLKQLDEAEIDAMVAEIEAKK 235 (249)
Q Consensus 159 ~~~aiG~g~~~a~~~Le~~~~~~~s-eeai~la~~~l~~~~~~--~~~~iei~~v~~~g~~~~~~~~ei~~~l~~i~~~~ 235 (249)
+++++|+|+..++++||+.|+++|+ +||++++++||..+.++ ++.+++|++|+++|.|++++++||++++.++.+++
T Consensus 160 ~~~aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~~~sg~~i~v~vi~~~~~~~~~~~~ei~~~~~~~~~~~ 239 (242)
T 1ryp_E 160 NAKAIGSGSEGAQAELLNEWHSSLTLKEAELLVLKILKQVMEEKLDENNAQLSCITKQDGFKIYDNEKTAELIKELKEKE 239 (242)
T ss_dssp SEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHCSSCCCTTSEEEEEEETTTEEEECCHHHHHHHHHHHHHHH
T ss_pred CEEEECCCCHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCCeEECCHHHHHHHHHHHhhhh
Confidence 9999999999999999999999999 99999999999999874 57899999999998789999999999999996654
No 11
>1yar_A Proteasome alpha subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_A 1pma_A 3c91_A 3c92_A 3ipm_A 2ku1_A 2ku2_A 1yau_A 3jrm_A 3jse_A 3jtl_A
Probab=100.00 E-value=4.1e-61 Score=410.24 Aligned_cols=224 Identities=41% Similarity=0.648 Sum_probs=210.3
Q ss_pred CCCCCCcccCCCCcchhhhhHHHHHccCCcEEEEEeCCEEEEEEeccCCcccccCCcccceEEecCCEEEEEecChhhHH
Q 025716 3 RYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADAR 82 (249)
Q Consensus 3 ~yd~~~~~fsp~G~l~Qveya~kav~~G~t~igi~~~dgVvla~d~~~~~~l~~~~~~~Ki~~I~~~i~~~~sG~~~D~~ 82 (249)
+||+.+|+|||||||+|||||++|+++|+|+|||+++||||||+|+|.+++++.+++.+||++|++|++++++|+.+|++
T Consensus 7 ~yd~~~t~fsp~Grl~QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~ 86 (233)
T 1yar_A 7 AYSRAITVFSPDGRLFQVEYAREAVKKGSTALGMKFANGVLLISDKKVRSRLIEQNSIEKIQLIDDYVAAVTSGLVADAR 86 (233)
T ss_dssp ------CCCCTTSCCHHHHHHHHHHTTSCCEEEEEETTEEEEEECCCCCCTTBCSTTCCSEEEEETTEEEEEEEBHHHHH
T ss_pred cCCCCCceECcCCeeHHHHhHHHHHhcCCcEEEEEECCEEEEEEeccCCcccccccccCeEEEecCCEEEEEeeCHHHHH
Confidence 79999999999999999999999999999999999999999999999999888888999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHhhhccCCCccceeEEEEEeeeCCCCCceEEEECCCCceeccceEe
Q 025716 83 VLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANA 162 (249)
Q Consensus 83 ~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~t~~~~~rP~gv~~ivaG~d~~~~gp~Ly~iDp~G~~~~~~~~a 162 (249)
.|.++++.+++.|+++++++++++.+++++++++|.|+++++.|||+|++||||||+ +||+||.+||+|++.++++++
T Consensus 87 ~l~~~~~~~~~~~~~~~~~~~~v~~~a~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~--~gp~Ly~id~~G~~~~~~~~a 164 (233)
T 1yar_A 87 VLVDFARISAQQEKVTYGSLVNIENLVKRVADQMQQYTQYGGVRPYGVSLIFAGIDQ--IGPRLFDCDPAGTINEYKATA 164 (233)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTBTTBCCCCEEEEEEEECS--SCEEEEEECTTCCEEEBSEEE
T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCcCCcCcceEEEEEEEEeC--CCCEEEEECCCCCEEeeeEEE
Confidence 999999999999999999999999999999999999999999999999999999994 789999999999999999999
Q ss_pred ecCCchHHHHHHHhhhccCCc-HHHHHHHHHHHHHHHhc--CCCcEEEEEEEcCCCEEEcCHHHHHHHH
Q 025716 163 TGRNSNSMREFLEKNYKETSG-QETIKLAIRALLEVVES--GGKNIEVAVMTREKGLKQLDEAEIDAMV 228 (249)
Q Consensus 163 iG~g~~~a~~~Le~~~~~~~s-eeai~la~~~l~~~~~~--~~~~iei~~v~~~g~~~~~~~~ei~~~l 228 (249)
+|+|+..++++||+.|+++|+ +||++++++||..+.++ ++++++|++|+++|.+++++++||+++|
T Consensus 165 iG~gs~~a~~~Le~~~~~~~s~eea~~la~~al~~~~~~d~s~~~i~v~vi~~~~~~~~~~~~ei~~~l 233 (233)
T 1yar_A 165 IGSGKDAVVSFLEREYKENLPEKEAVTLGIKALKSSLEEGEELKAPEIASITVGNKYRIYDQEEVKKFL 233 (233)
T ss_dssp ESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHTSCSSCCCCCCEEEEEETTSCCEECCHHHHHTTC
T ss_pred EcCCcHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCCEEECCHHHHHhhC
Confidence 999999999999999999999 99999999999999875 4789999999999889999999998763
No 12
>1iru_G 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_F* 3une_F 3unf_F* 3unh_F
Probab=100.00 E-value=4.3e-61 Score=415.13 Aligned_cols=231 Identities=28% Similarity=0.414 Sum_probs=220.2
Q ss_pred CCCCCCCcccCCCCcchhhhhHHHHHccCCcEEEEEeCCEEEEEEeccCCcccccCCcccceEEecCCEEEEEecChhhH
Q 025716 2 ARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADA 81 (249)
Q Consensus 2 ~~yd~~~~~fsp~G~l~Qveya~kav~~G~t~igi~~~dgVvla~d~~~~~~l~~~~~~~Ki~~I~~~i~~~~sG~~~D~ 81 (249)
++||+.+|+|||||||+|||||++|+++|+|+|||+++||||||+|+|.++++...++.+||++|++|++|+++|+.+|+
T Consensus 5 ~~yd~~~t~fsp~Grl~QvEyA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~KI~~i~~~i~~~~aG~~aD~ 84 (254)
T 1iru_G 5 TGYDLSASTFSPDGRVFQVEYAMKAVENSSTAIGIRCKDGVVFGVEKLVLSKLYEEGSNKRLFNVDRHVGMAVAGLLADA 84 (254)
T ss_dssp SSTTSCTTCCCTTSCCHHHHHHHHHHHTSCCEEEEECSSBEEEEEEEECSCTTBCTTTTCCEEEEETTEEEEEEECHHHH
T ss_pred cccCCCCccCCcCCccHHHHhHHHHHhcCCCEEEEEECCEEEEEEecccCCCCcCcCcCCcEEEECCCEEEEEecChHHH
Confidence 57999999999999999999999999999999999999999999999999977666789999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHhhhccCCCccceeEEEEEeeeCCCCCceEEEECCCCceeccceE
Q 025716 82 RVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKAN 161 (249)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~t~~~~~rP~gv~~ivaG~d~~~~gp~Ly~iDp~G~~~~~~~~ 161 (249)
+.|+++++.+++.|+++++++++++.+++++++++|.|++++++|||+|++||||||+ ++||+||.+||+|++.+++++
T Consensus 85 ~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~-~~gp~Ly~idp~G~~~~~~~~ 163 (254)
T 1iru_G 85 RSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSV-NDGAQLYMIDPSGVSYGYWGC 163 (254)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSBSSBCCCSEEEEEEEEET-TTEEEEEEECTTCCEEEBSEE
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccccccccceEEEEEEEEeC-CCCcEEEEEcCCCCEEeeeeE
Confidence 9999999999999999999999999999999999999999989999999999999996 689999999999999999999
Q ss_pred eecCCchHHHHHHHhhhccCCc-HHHHHHHHHHHHHHHhc---CCCcEEEEEEEcC--CCEEEcCHHHHHHHHHHHHH
Q 025716 162 ATGRNSNSMREFLEKNYKETSG-QETIKLAIRALLEVVES---GGKNIEVAVMTRE--KGLKQLDEAEIDAMVAEIEA 233 (249)
Q Consensus 162 aiG~g~~~a~~~Le~~~~~~~s-eeai~la~~~l~~~~~~---~~~~iei~~v~~~--g~~~~~~~~ei~~~l~~i~~ 233 (249)
++|+|+..++++||+.|+++|+ +||++++++||..+++. ++.+++|++|+++ |.+++++++++++++..+..
T Consensus 164 aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~~~~~~~~iev~vi~~~~~g~~~~l~~~~i~~~~~~~~~ 241 (254)
T 1iru_G 164 AIGKARQAAKTEIEKLQMKEMTCRDIVKEVAKIIYIVHDEVKDKAFELELSWVGELTNGRHEIVPKDIREEAEKYAKE 241 (254)
T ss_dssp EESTTHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHSCSSSSCCEEEEEEECBTTTTTCCEECCHHHHHHHHHHHHH
T ss_pred EecCccHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhhccCCCCcEEEEEEEcCCCCCeEECCHHHHHHHHHHHHH
Confidence 9999999999999999999999 99999999999999875 4668999999987 56999999999999998754
No 13
>1iru_E 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_D* 3une_D 3unf_D* 3unh_D
Probab=100.00 E-value=1.2e-60 Score=409.36 Aligned_cols=226 Identities=36% Similarity=0.645 Sum_probs=216.9
Q ss_pred CCCCCCcccCCCCcchhhhhHHHHHccCCcEEEEEeCCEEEEEEeccCCcccccCCcccceEEecCCEEEEEecChhhHH
Q 025716 3 RYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADAR 82 (249)
Q Consensus 3 ~yd~~~~~fsp~G~l~Qveya~kav~~G~t~igi~~~dgVvla~d~~~~~~l~~~~~~~Ki~~I~~~i~~~~sG~~~D~~ 82 (249)
+||+.+|+|||||||+|||||++|+++|+|+|||+++||||||+|+|.+++++.+++.+||++|++|++++++|+.+|++
T Consensus 7 ~yd~~~t~fsp~Grl~QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~ 86 (241)
T 1iru_E 7 EYDRGVNTFSPEGRLFQVEYDIEAIKLGSTAIGIQTSEGVCLAVEKRITSPLMEPSSIEKIVEIDAHIGCAMSGLIADAK 86 (241)
T ss_dssp -CCCCTTCBCTTSCBHHHHHHHHHHTTSCCEEEEEETTEEEEEEECCCCCTTBCTTSCCSEEEEETTEEEEEEECHHHHH
T ss_pred CCCCCCceECCCCccHHHHHHHHHHHcCCcEEEEEcCCEEEEEEecccCCcCcCccccceEEEEcCCEEEEEeeChHHHH
Confidence 79999999999999999999999999999999999999999999999999876688899999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHhhhccCC-----CccceeEEEEEeeeCCCCCceEEEECCCCceec
Q 025716 83 VLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGG-----VRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSA 157 (249)
Q Consensus 83 ~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~t~~~~-----~rP~gv~~ivaG~d~~~~gp~Ly~iDp~G~~~~ 157 (249)
.|.++++.+++.|+++++++++++.+++++++++|.|+++.+ .|||+|++|||||| ++||+||.+||+|++.+
T Consensus 87 ~l~~~~~~~~~~~~~~~~~~~~v~~~a~~l~~~~~~y~~~~~~~~l~~rp~~v~~lvaG~D--~~gp~Ly~idp~G~~~~ 164 (241)
T 1iru_E 87 TLIDKARVETQNHWFTYNETMTVESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVD--EKGPQLFHMDPSGTFVQ 164 (241)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHTTTTCBCSTTCCSSCBSSCCCEEEEEEEEE--TTEEEEEEECTTSCEEE
T ss_pred HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhccccccccccccceEEEEEEEEe--CCCCEEEEECCCCcEEe
Confidence 999999999999999999999999999999999999999887 89999999999999 57999999999999999
Q ss_pred cceEeecCCchHHHHHHHhhhccCCc-HHHHHHHHHHHHHHHhc--CCCcEEEEEEEcCCCEEEcCHHHHHHHHHH
Q 025716 158 WKANATGRNSNSMREFLEKNYKETSG-QETIKLAIRALLEVVES--GGKNIEVAVMTREKGLKQLDEAEIDAMVAE 230 (249)
Q Consensus 158 ~~~~aiG~g~~~a~~~Le~~~~~~~s-eeai~la~~~l~~~~~~--~~~~iei~~v~~~g~~~~~~~~ei~~~l~~ 230 (249)
++++|+|+|+..++++||+.|+++|+ +||++++++||..+.++ ++.+++|++|+++|.+++++++||++++.+
T Consensus 165 ~~~~aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~~~sg~~i~v~vi~~~~~~~~l~~~ei~~~~~~ 240 (241)
T 1iru_E 165 CDARAIGSASEGAQSSLQELYHKSMTLKEAIKSSLIILKQVMEEKLNATNIELATVQPGQNFHMFTKEELEEVIKD 240 (241)
T ss_dssp BSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHCSSCCCTTSEEEEEECSSSCCEECCHHHHHHHHTT
T ss_pred cceEEECCCcHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhccCCCCCEEEEEEECCCCeEECCHHHHHHHHHh
Confidence 99999999999999999999999999 99999999999999874 578999999999988999999999999865
No 14
>1ryp_B 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_B 1g0u_A* 1jd2_A* 1g65_A 1z7q_B 2f16_A* 2fak_A* 2fny_A* 2gpl_A* 2zcy_A* 3bdm_A* 3d29_A* 3dy3_A* 3dy4_A* 3e47_A* 3gpj_A* 3gpt_A* 3gpw_A* 3hye_A* 3mg0_A* ...
Probab=100.00 E-value=3.6e-60 Score=408.49 Aligned_cols=228 Identities=36% Similarity=0.600 Sum_probs=217.5
Q ss_pred CCCCCCCcccCCCCcchhhhhHHHHHccCCcEEEEEeCCEEEEEEeccCCcccccCCcccceEEecCCEEEEEecChhhH
Q 025716 2 ARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADA 81 (249)
Q Consensus 2 ~~yd~~~~~fsp~G~l~Qveya~kav~~G~t~igi~~~dgVvla~d~~~~~~l~~~~~~~Ki~~I~~~i~~~~sG~~~D~ 81 (249)
++||+.+|+|||||||+|||||++|+++|+|+|||+++||||||+|+|.+.+++.+++.+||++|++|++++++|..+|+
T Consensus 3 ~~yd~~~t~fsp~Grl~QvEyA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~ 82 (250)
T 1ryp_B 3 DRYSFSLTTFSPSGKLGQIDYALTAVKQGVTSLGIKATNGVVIATEKKSSSPLAMSETLSKVSLLTPDIGAVYSGMGPDY 82 (250)
T ss_dssp CCCCSBSSCBCTTSCBHHHHHHHHHHHTSCCEEEEEETTEEEEEEECCCSCSSBCGGGCCSSEEEETTEEEEEEECHHHH
T ss_pred CcccCCceeECCCCccHHHHhHHHHHHcCCcEEEEEECCEEEEEEeccCCCccccCcccCceEEECCCEEEEeeeCHHHH
Confidence 47999999999999999999999999999999999999999999999998888888899999999999999999999999
Q ss_pred HHHHHHHHHHHHH-hhhhcCCCCCHHHHHHHHHHHHHhhhccCCCccceeEEEEEeeeCCCCCceEEEECCCCceeccce
Q 025716 82 RVLINRARIECQS-HRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKA 160 (249)
Q Consensus 82 ~~l~~~~~~~~~~-~~~~~~~~i~~~~la~~ls~~~~~~t~~~~~rP~gv~~ivaG~d~~~~gp~Ly~iDp~G~~~~~~~ 160 (249)
+.|.++++.+++. |++.++.+++++.+++.++++++.++++.++|||+|++||||||+ ++||+||.+||+|++.++++
T Consensus 83 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~~~~~~~~~~rp~~v~~lvaG~D~-~~gp~Ly~idp~G~~~~~~~ 161 (250)
T 1ryp_B 83 RVLVDKSRKVAHTSYKRIYGEYPPTKLLVSEVAKIMQEATQSGGVRPFGVSLLIAGHDE-FNGFSLYQVDPSGSYFPWKA 161 (250)
T ss_dssp HHHHHHHHHHHHHTTHHHHSSCCCHHHHHHHHHHHHHHTTTSBTBCCCCEEEEEEEEET-TTEEEEEEECTTSCEEEBSE
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCcccceEEEEEEEEcC-CCCcEEEEECCCCCEEeece
Confidence 9999999999999 999999999999999999999999999989999999999999996 57999999999999999999
Q ss_pred EeecCCchHHHHHHHhhhccCCc-HHHHHHHHHHHHHHHhc--CCCcEEEEEEEcC---------------CCEEEcCHH
Q 025716 161 NATGRNSNSMREFLEKNYKETSG-QETIKLAIRALLEVVES--GGKNIEVAVMTRE---------------KGLKQLDEA 222 (249)
Q Consensus 161 ~aiG~g~~~a~~~Le~~~~~~~s-eeai~la~~~l~~~~~~--~~~~iei~~v~~~---------------g~~~~~~~~ 222 (249)
+++|+|+..++++||+.|+++|+ +||++++++||..+..+ ++++++|++|+++ +.|++++++
T Consensus 162 ~aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~~~sg~~i~v~vi~~~~~~~~~~~~~~~~~~~~~~~l~~~ 241 (250)
T 1ryp_B 162 TAIGKGSVAAKTFLEKRWNDELELEDAIHIALLTLKESVEGEFNGDTIELAIIGDENPDLLGYTGIPTDKGPRFRKLTSQ 241 (250)
T ss_dssp EEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHCCSCCSTTTEEEEEECSCCGGGTSEESCSSCCCCSEEECCHH
T ss_pred eEecCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhccccCCCCEEEEEEEccccccccccccccCCCCCeEECCHH
Confidence 99999999999999999999999 99999999999999764 5789999999986 249999999
Q ss_pred HHHHHHHH
Q 025716 223 EIDAMVAE 230 (249)
Q Consensus 223 ei~~~l~~ 230 (249)
||++++.+
T Consensus 242 ei~~~l~~ 249 (250)
T 1ryp_B 242 EINDRLEA 249 (250)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHHh
Confidence 99999864
No 15
>1ryp_F 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_E* 1g65_E 2f16_E* 2fak_E* 2fny_E* 2gpl_E* 3d29_E* 3dy3_E* 3dy4_E* 3e47_E* 3gpj_E* 3gpt_E* 3gpw_E* 3hye_E* 3mg0_E* 3mg4_E* 3oeu_E* 3oev_E* 3okj_E* 3shj_E* ...
Probab=100.00 E-value=1.7e-60 Score=406.42 Aligned_cols=222 Identities=32% Similarity=0.532 Sum_probs=211.3
Q ss_pred CCCCCCcccCCCCcchhhhhHHHHHccCCcEEEEEeCCEEEEEEeccCCcccccCCcccceEEecCCEEEEEecChhhHH
Q 025716 3 RYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADAR 82 (249)
Q Consensus 3 ~yd~~~~~fsp~G~l~Qveya~kav~~G~t~igi~~~dgVvla~d~~~~~~l~~~~~~~Ki~~I~~~i~~~~sG~~~D~~ 82 (249)
+||+.+|+|||||||+|||||++|+++|+|+|||+++||||||+|+|.+.++. ++.+||++|++|++++++|+.+|++
T Consensus 4 ~yd~~~t~fsp~Grl~QvEyA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~l~--~~~~Ki~~i~~~i~~~~aG~~aD~~ 81 (233)
T 1ryp_F 4 NYDGDTVTFSPTGRLFQVEYALEAIKQGSVTVGLRSNTHAVLVALKRNADELS--SYQKKIIKCDEHMGLSLAGLAPDAR 81 (233)
T ss_dssp HHSSCTTCCCTTSCCHHHHHHHHHHHTSCCEEEEECSSEEEEEEECCCSSTTB--CCCCCEEEEETTEEEEEEECHHHHH
T ss_pred cccCCCccCCCCCeehHHHHHHHHHHcCCCEEEEEcCCEEEEEEEeccccccc--cccCcEEEEcCCEEEEEEechHHHH
Confidence 69999999999999999999999999999999999999999999999988865 3789999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHhhhccCCCccceeEEEEEeeeCCCCCceEEEECCCCceeccceEe
Q 025716 83 VLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANA 162 (249)
Q Consensus 83 ~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~t~~~~~rP~gv~~ivaG~d~~~~gp~Ly~iDp~G~~~~~~~~a 162 (249)
.|.++++.+++.|+++++++++++.+++++++++|.|+|+.+.|||+|++||||||+ +||+||.+||+|++.+++++|
T Consensus 82 ~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~rp~~v~~lvaG~D~--~gp~Ly~idp~G~~~~~~~~a 159 (233)
T 1ryp_F 82 VLSNYLRQQCNYSSLVFNRKLAVERAGHLLCDKAQKNTQSYGGRPYGVGLLIIGYDK--SGAHLLEFQPSGNVTELYGTA 159 (233)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEET--TEEEEEEECTTSCEEEESEEE
T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcccCCcCcceEEEEEEEeC--CcCEEEEECCCCCeeeeeEEE
Confidence 999999999999999999999999999999999999999999999999999999994 789999999999999999999
Q ss_pred ecCCchHHHHHHHhhhcc--CC--c-HHHHHHHHHHHHHHHh---cCCCcEEEEEEEcCCCEEEcCHHHHHHHH
Q 025716 163 TGRNSNSMREFLEKNYKE--TS--G-QETIKLAIRALLEVVE---SGGKNIEVAVMTREKGLKQLDEAEIDAMV 228 (249)
Q Consensus 163 iG~g~~~a~~~Le~~~~~--~~--s-eeai~la~~~l~~~~~---~~~~~iei~~v~~~g~~~~~~~~ei~~~l 228 (249)
+|+|+..++++||+.|++ +| + +||++++++||..+++ .++.+++|++|++++.|++++++||+++|
T Consensus 160 iG~gs~~a~~~Le~~~~~~~~m~~s~eea~~~a~~al~~~~~d~~~s~~~i~v~vi~~~~~~~~l~~~ei~~~l 233 (233)
T 1ryp_F 160 IGARSQGAKTYLERTLDTFIKIDGNPDELIKAGVEAISQSLRDESLTVDNLSIAIVGKDTPFTIYDGEAVAKYI 233 (233)
T ss_dssp ESTTHHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHTTSCCSSCCCTTTEEEEEEETTEEEEEEEGGGGGGGC
T ss_pred ECCCcHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHHHhhcccCCCCcEEEEEEECCCCEEECCHHHHHhhC
Confidence 999999999999999999 99 9 9999999999999883 25789999999998559999999998763
No 16
>1iru_F 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_E* 3une_E 3unf_E* 3unh_E
Probab=100.00 E-value=9.7e-60 Score=408.50 Aligned_cols=227 Identities=34% Similarity=0.598 Sum_probs=217.0
Q ss_pred CCCCCCCcccCCCCcchhhhhHHHHHccCCcEEEEEeCCEEEEEEeccCCcccccCCcccceEEecCCEEEEEecChhhH
Q 025716 2 ARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADA 81 (249)
Q Consensus 2 ~~yd~~~~~fsp~G~l~Qveya~kav~~G~t~igi~~~dgVvla~d~~~~~~l~~~~~~~Ki~~I~~~i~~~~sG~~~D~ 81 (249)
++||+.+|+|||||||+|||||+||+++|+|+|||+++||||||+|+|.++++. ++.+||++|++|++|+++|+.+|+
T Consensus 4 ~~yd~~~t~fsP~Grl~QvEYA~~av~~Gtt~vgi~~~dgVVlaaD~r~~~gl~--~~~~KI~~i~~~i~~~~aG~~aD~ 81 (263)
T 1iru_F 4 NQYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELA--AHQKKILHVDNHIGISIAGLTADA 81 (263)
T ss_dssp CTTTSCTTCCCTTSCCHHHHHHHHHHHHSCCEEEEECSSEEEEEEECCCSSTTB--CCCCCEEEEETTEEEEEEECHHHH
T ss_pred CCCCCCCccCCCCCeehHHHHHHHHHHcCCcEEEEEeCCEEEEEEecccccccc--cchhcEEEEcCCEEEEEeCCHHHH
Confidence 479999999999999999999999999999999999999999999999998864 378999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHhhhccCCCccceeEEEEEeeeCCCCCceEEEECCCCceeccceE
Q 025716 82 RVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKAN 161 (249)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~t~~~~~rP~gv~~ivaG~d~~~~gp~Ly~iDp~G~~~~~~~~ 161 (249)
+.|+++++.++..|+++++++++++.+++++++++|.|+++++.|||+|++|||||| ++||+||.+||+|++.+++++
T Consensus 82 ~~l~~~~~~~~~~~~~~~~~~i~v~~la~~l~~~l~~~t~~~~~RP~~v~~lvaG~D--~~gp~Ly~idp~G~~~~~~~~ 159 (263)
T 1iru_F 82 RLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYD--DMGPHIFQTCPSANYFDCRAM 159 (263)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEE--TTEEEEEEECSSSCEEEESEE
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhhcccccccceEEEEEEEEc--CCCCEEEEECCCCCEEEeeEE
Confidence 999999999999999999999999999999999999999999999999999999999 478999999999999999999
Q ss_pred eecCCchHHHHHHHhhhcc--CCc-HHHHHHHHHHHHHHHhc----CCCcEEEEEEEcCCCEEEcCHHHHHHHHHHHH
Q 025716 162 ATGRNSNSMREFLEKNYKE--TSG-QETIKLAIRALLEVVES----GGKNIEVAVMTREKGLKQLDEAEIDAMVAEIE 232 (249)
Q Consensus 162 aiG~g~~~a~~~Le~~~~~--~~s-eeai~la~~~l~~~~~~----~~~~iei~~v~~~g~~~~~~~~ei~~~l~~i~ 232 (249)
++|+|+..++++||+.|++ +|+ +||++++++||..++++ ++.+++|++|++++.++++++++|++++.++.
T Consensus 160 aiGsgs~~a~~~Le~~~~~~~~ms~eea~~la~~al~~~~~rd~~~sg~~iev~vi~~~~~~~~l~~~ei~~~~~~~~ 237 (263)
T 1iru_F 160 SIGARSQSARTYLERHMSEFMECNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIYDDDDVSPFLEGLE 237 (263)
T ss_dssp EESTTHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCTTCCCCTTTEEEEEEETTEEEEEECSGGGHHHHTTCC
T ss_pred EcCcccHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHhccccCCCCcEEEEEEECCCCeEECCHHHHHHHHHHHh
Confidence 9999999999999999998 999 99999999999999854 46789999999985599999999999999986
No 17
>1ryp_G 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_F* 1g65_F 1vsy_G 2f16_F* 2fak_F* 2fny_F* 2gpl_F* 3d29_F* 3dy3_F* 3dy4_F* 3e47_F* 3gpj_F* 3gpt_F* 3gpw_F* 3hye_F* 3l5q_L 3mg0_F* 3mg4_F* 3okj_F* 3shj_F* ...
Probab=100.00 E-value=6.8e-59 Score=399.13 Aligned_cols=224 Identities=33% Similarity=0.482 Sum_probs=209.6
Q ss_pred CCCCCCCcccCCCCcchhhhhHHHHHccCCcEEEEEeCCEEEEEEeccCCcccccCCcccceEEecCCEEEEEecChhhH
Q 025716 2 ARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADA 81 (249)
Q Consensus 2 ~~yd~~~~~fsp~G~l~Qveya~kav~~G~t~igi~~~dgVvla~d~~~~~~l~~~~~~~Ki~~I~~~i~~~~sG~~~D~ 81 (249)
++||+++|+|||||||+|||||++|+++|+|+|||+++||||||+|++.++++......+||++|++|++++++|+.+|+
T Consensus 2 ~~yd~~~t~fsp~Grl~QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~KI~~i~~~i~~~~aG~~aD~ 81 (244)
T 1ryp_G 2 TGYDLSNSVFSPDGRNFQVEYAVKAVENGTTSIGIKCNDGVVFAVEKLITSKLLVPQKNVKIQVVDRHIGCVYSGLIPDG 81 (244)
T ss_dssp CCTTSSTTCCCTTSCCHHHHHHHHHHHTSCCEEEEEETTEEEEEEEEECCCTTBCTTTSCCCEEETTTEEEEEEECHHHH
T ss_pred CCccCCcccCCcCCchHHHHhHHHHHHCCCCEEEEEECCEEEEEEecccCCCCccccccCceEEecCCEEEEEcccHHHH
Confidence 68999999999999999999999999999999999999999999999999977665567999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHhhhccCCCccceeEEEEEeeeCCCCCceEEEECCCCceeccceE
Q 025716 82 RVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKAN 161 (249)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~t~~~~~rP~gv~~ivaG~d~~~~gp~Ly~iDp~G~~~~~~~~ 161 (249)
+.|+++++.++..|+++++++++++.+++++++++|.|+++++.|||+|++||+||| ++||+||.+||+|++.+++++
T Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~rp~~v~~lvaG~D--~~gp~Ly~idp~G~~~~~~~~ 159 (244)
T 1ryp_G 82 RHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVD--KNGAHLYMLEPSGSYWGYKGA 159 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSCTTBCCCCEEEEEEEEE--TTEEEEEEECTTSCEEEBSEE
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCccCceEEEEEEEEe--CCcCEEEEECCCCCEEEeeEE
Confidence 999999999999999999999999999999999999999998899999999999999 479999999999999999999
Q ss_pred eecCCchHHHHHHHhh---hccCCc-HHHHHHHHHHHHHHHhc---CCCcEEEEEEEc---CCCEEEcCHHHHHHHH
Q 025716 162 ATGRNSNSMREFLEKN---YKETSG-QETIKLAIRALLEVVES---GGKNIEVAVMTR---EKGLKQLDEAEIDAMV 228 (249)
Q Consensus 162 aiG~g~~~a~~~Le~~---~~~~~s-eeai~la~~~l~~~~~~---~~~~iei~~v~~---~g~~~~~~~~ei~~~l 228 (249)
++|+|+..++++||+. |+++|+ +||++++++||..+.++ ++.+++|++|++ +| ++.+.++++.+..
T Consensus 160 aiG~gs~~a~~~Le~~~~~~~~~ms~eea~~la~~al~~~~~~d~~s~~~iev~vi~~~~~~g-~~~~~~~~~~~~~ 235 (244)
T 1ryp_G 160 ATGKGRQSAKAELEKLVDHHPEGLSAREAVKQAAKIIYLAHEDNKEKDFELEISWCSLSETNG-LHKFVKGDLLQEA 235 (244)
T ss_dssp EESTTHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHGGGGTTSCEEEEEEEEETTTTTT-SEEECCTHHHHHH
T ss_pred EECCChHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHHHhccCCCCCeEEEEEEEecCCCC-eeeeChHHHHHHH
Confidence 9999999999999997 999999 99999999999999875 466899999998 67 7777766654443
No 18
>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G* 3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 4b4t_G 4g4s_G* 3bdm_F* 1fnt_G* 2zcy_F*
Probab=100.00 E-value=6.2e-59 Score=407.26 Aligned_cols=225 Identities=32% Similarity=0.468 Sum_probs=211.1
Q ss_pred CCCCCCCcccCCCCcchhhhhHHHHHccCCcEEEEEeCCEEEEEEeccCCcccccCCcccceEEecCCEEEEEecChhhH
Q 025716 2 ARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADA 81 (249)
Q Consensus 2 ~~yd~~~~~fsp~G~l~Qveya~kav~~G~t~igi~~~dgVvla~d~~~~~~l~~~~~~~Ki~~I~~~i~~~~sG~~~D~ 81 (249)
++||+++|+|||+|||+|||||+||+++|+|+|||+++||||||+|+|.+++++.....+||++|++||+|+++|+.+|+
T Consensus 6 ~~yd~~~t~fSP~Grl~QvEYA~kAv~~GtT~Vgik~kdGVVlAaD~r~t~gl~~~~~~~KI~~I~d~i~~~~aG~~aD~ 85 (288)
T 3nzj_F 6 TGYDLSNSVFSPDGRNFQVEYAVKAVENGTTSIGIKCNDGVVFAVEKLITSKLLVPQKNVKIQVVDRHIGCVYSGLIPDG 85 (288)
T ss_dssp CCTTSSTTCCCTTSCCHHHHHHHHHHHTSCCEEEEEETTEEEEEEEEEECCTTBCTTCSCCCEEETTTEEEEEEECHHHH
T ss_pred CCccCCcccCCCCCchHHHHHHHHHHhcCCcEEEEEECCEEEEEEcCCcccCCccccccceEEEEcCCEEEEecCcHHHH
Confidence 47999999999999999999999999999999999999999999999999987666678999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHhhhccCCCccceeEEEEEeeeCCCCCceEEEECCCCceeccceE
Q 025716 82 RVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKAN 161 (249)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~t~~~~~rP~gv~~ivaG~d~~~~gp~Ly~iDp~G~~~~~~~~ 161 (249)
+.|+++++.+++.|+++++++++++.+++++++++|.|+++++.|||+|++||||||+ +||+||.+||+|++.+++++
T Consensus 86 ~~l~~~lr~e~~~y~~~~~~~i~v~~lA~~l~~~l~~yt~~~~~rP~gv~~lvaG~D~--~Gp~Ly~iDp~G~~~~~~~~ 163 (288)
T 3nzj_F 86 RHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDK--NGAHLYMLEPSGSYWGYKGA 163 (288)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSCTTBCCCCEEEEEEEEET--TEEEEEEECTTSCEEEBSEE
T ss_pred HHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHhccCCCceEEEEEEEEeC--CCCEEEEECCCCCEEEcCEE
Confidence 9999999999999999999999999999999999999999999999999999999995 78999999999999999999
Q ss_pred eecCCchHHHHHHHhh---hccCCc-HHHHHHHHHHHHHHHhc---CCCcEEEEEEEc---CCCEEEcCHHHHHHHH
Q 025716 162 ATGRNSNSMREFLEKN---YKETSG-QETIKLAIRALLEVVES---GGKNIEVAVMTR---EKGLKQLDEAEIDAMV 228 (249)
Q Consensus 162 aiG~g~~~a~~~Le~~---~~~~~s-eeai~la~~~l~~~~~~---~~~~iei~~v~~---~g~~~~~~~~ei~~~l 228 (249)
++|++++.++++||+. |+++|+ +||++++++||..++++ .+.++||+||++ +|.+++++.+.+++..
T Consensus 164 aiGsgs~~a~~~Lek~~~~~~~~ms~eEAv~la~~al~~a~~~~~~~~~~iev~vIt~~~~~~~~~~vp~~~~~~~~ 240 (288)
T 3nzj_F 164 ATGKGRQSAKAELEKLVDHHPEGLSAREAVKQAAKIIYLAHEDNKEKDFELEISWCSLSETNGLHKFVKGDLLQEAI 240 (288)
T ss_dssp EESTTHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHGGGGTTSEEEEEEEEEETTTSTTCCEECCHHHHHHHH
T ss_pred EEcCcHHHHHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEEecCCCceEEECCHHHHHHHH
Confidence 9999999999999999 999999 99999999999999876 356799999998 3556677777766553
No 19
>1q5q_A Proteasome alpha-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_A 1q5r_A
Probab=100.00 E-value=2.5e-52 Score=361.14 Aligned_cols=232 Identities=15% Similarity=0.253 Sum_probs=195.3
Q ss_pred CcccCCCCcch-hhhhHHHHHccCCcEEEEEeCCEEEEEEeccCCcccccCCcccceEEecCCEEEEEecChhhHHHHHH
Q 025716 8 ITVFSPDGHLF-QVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLIN 86 (249)
Q Consensus 8 ~~~fsp~G~l~-Qveya~kav~~G~t~igi~~~dgVvla~d~~~~~~l~~~~~~~Ki~~I~~~i~~~~sG~~~D~~~l~~ 86 (249)
+..|||||++. |||||++|+++|+|+|||+++||||||+|+| +++.+||++|++||+|+++|+.+|++.|++
T Consensus 4 p~~~sPe~~~~~qvEYA~~av~~Gtt~vgi~~~dgVVlaaD~r-------s~~~~KI~~I~d~i~~~~aG~~aD~~~l~~ 76 (259)
T 1q5q_A 4 PYYASAEQIMRDRSELARKGIARGRSVVVLTFRDGVLFVAENP-------STALHKVSELYDRLGFAAVGKYNEFENLRR 76 (259)
T ss_dssp -----CHHHHHHHHHHHHHHHHTSCCEEEEECSSEEEEEECCS-------CSSSCSEEEEETTEEEEEEECHHHHHHHHH
T ss_pred CcccCHHHHHHHHHHHHHHHHhcCCcEEEEEeCCEEEEEEecC-------CCCcCcEEEeCCCEEEEEccCHHHHHHHHH
Confidence 44689999996 9999999999999999999999999999998 256899999999999999999999999999
Q ss_pred HHHHHHHHhhhhcC-CCCCHHHHHHHHHH-HHHhhhccCCCccceeEEEEEeee--CCCCCceEEEECCCCcee-ccceE
Q 025716 87 RARIECQSHRLTVE-DPVTVEYITRYIAG-LQQKYTQSGGVRPFGLSTLIVGFD--PYTGVPSLYQTDPSGTFS-AWKAN 161 (249)
Q Consensus 87 ~~~~~~~~~~~~~~-~~i~~~~la~~ls~-~~~~~t~~~~~rP~gv~~ivaG~d--~~~~gp~Ly~iDp~G~~~-~~~~~ 161 (249)
+++.+++.|++.++ .+++++.+++++++ +.|.|+ .+.|||+|++|||||| +.++||+||.+||+|++. .++++
T Consensus 77 ~~~~~~~~~~~~~~~~~i~v~~la~~l~~~l~q~yt--~~~rP~~v~~lvaG~D~~~~~~gp~Ly~idp~G~~~~~~~~~ 154 (259)
T 1q5q_A 77 AGIVHADMRGYSYDRRDVTGRSLANAYAQTLGTIFT--EQPKPYEVEICVAEVGRVGSPKAPQLYRITYDGSIVDEQHFV 154 (259)
T ss_dssp HHHHHHHHHHHHSCGGGCCHHHHHHHHHHHHHHHHH--HSSSCCCEEEEEEECCCSSCCCCCEEEEEETTSCEEEESSEE
T ss_pred HHHHHHHHHHHHcCCcCCCHHHHHHHHHHHHHHHhc--cCCCCceEEEEEEEEcccCCCCCCEEEEECCCCceeeCCCEE
Confidence 99999999999988 59999999999999 777788 3679999999999999 223789999999999999 88999
Q ss_pred eecCCchHHHHHHHhhhccCCc-HHHHHHHHHHHHHHH-----hc--CCCcEEEEEEEcCC---CEEEcCHHHHHHHHHH
Q 025716 162 ATGRNSNSMREFLEKNYKETSG-QETIKLAIRALLEVV-----ES--GGKNIEVAVMTREK---GLKQLDEAEIDAMVAE 230 (249)
Q Consensus 162 aiG~g~~~a~~~Le~~~~~~~s-eeai~la~~~l~~~~-----~~--~~~~iei~~v~~~g---~~~~~~~~ei~~~l~~ 230 (249)
++|++++.++++||++|+++|+ +||++++++||..+. ++ ++.+++|++|+++| .|+++++++|++++.+
T Consensus 155 aiG~gs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~~~~~rd~sg~~iev~vi~~~~~~~~~~~l~~~ei~~~~~~ 234 (259)
T 1q5q_A 155 VMGGTTEPIATAMRESYRADLDLEAAVGIAVNALRQGGAGEGEKRNVDVASLEVAVLDQSRPRRAFRRIAGTALEQLVPA 234 (259)
T ss_dssp EESSSHHHHHHHHHHHCCTTCCHHHHHHHHHHHHTTCC--------CCSSCSEEEEEETTSSSCCEEECCHHHHHTTSCC
T ss_pred EECCChHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhhcccccccCCCCcEEEEEEECCCCcCCeEECCHHHHHHHHHH
Confidence 9999999999999999999999 999999999999887 43 57789999999985 6999999999999998
Q ss_pred HHHHH----HHHHHhhcCCCCC
Q 025716 231 IEAKK----AAAEAAKKGPPKE 248 (249)
Q Consensus 231 i~~~~----~~~~~~~~~~~~~ 248 (249)
+.+.+ ++..+..+++|..
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~ 256 (259)
T 1q5q_A 235 EPAAASESAPEPKPDTETKPAD 256 (259)
T ss_dssp C---------------------
T ss_pred hhhcccccccccCCCCCCCCcc
Confidence 87544 2333444555543
No 20
>3mi0_A Proteasome subunit alpha; enzyme inhibitors, lactones, proteasome endopeptidase comple mycobacterium tuberculosis, hydrolase; HET: SA6; 2.20A {Mycobacterium tuberculosis} SCOP: d.153.1.4 PDB: 3h6f_A 3krd_A* 3h6i_A* 3mka_A 2fhh_A* 2fhg_A 3hfa_D 3hf9_A 3mfe_D
Probab=100.00 E-value=1.8e-49 Score=340.71 Aligned_cols=209 Identities=19% Similarity=0.311 Sum_probs=187.4
Q ss_pred hhhhHHHHHccCCcEEEEEeCCEEEEEEeccCCcccccCCcccceEEecCCEEEEEecChhhHHHHHHHHHHHHHHhhhh
Q 025716 19 QVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLT 98 (249)
Q Consensus 19 Qveya~kav~~G~t~igi~~~dgVvla~d~~~~~~l~~~~~~~Ki~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~ 98 (249)
++|||+||+++|+|+|||+++||||||+|+| +++.+|||+|++|++|+++|+.+|++.|.+.++.+++.|+++
T Consensus 16 r~EYA~~av~~GtT~vgi~~kdgVVlaadkr-------~~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~~~~~~~l~~~~ 88 (248)
T 3mi0_A 16 RSELARKGIARAKSVVALAYAGGVLFVAENP-------SRSLQKISELYDRVGFAAAGKFNEFDNLRRGGIQFADTRGYA 88 (248)
T ss_dssp HHHHHHHHHHTSCCEEEEEETTEEEEEEECC-------CSSSCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHhCCCcEEEEEeCCEEEEEEeCC-------CCCCCCeEEECCCEEEEEccCHHHHHHHHHHHHHHHHHHHHh
Confidence 5899999999999999999999999999998 347899999999999999999999999999999999999999
Q ss_pred cC-CCCCHHHHHHHHH-HHHHhhhccCCCccceeEEEEEeeeC--CCCCceEEEECCCCceec-cceEeecCCchHHHHH
Q 025716 99 VE-DPVTVEYITRYIA-GLQQKYTQSGGVRPFGLSTLIVGFDP--YTGVPSLYQTDPSGTFSA-WKANATGRNSNSMREF 173 (249)
Q Consensus 99 ~~-~~i~~~~la~~ls-~~~~~~t~~~~~rP~gv~~ivaG~d~--~~~gp~Ly~iDp~G~~~~-~~~~aiG~g~~~a~~~ 173 (249)
++ .+++++.|+++++ .+.|.|++ +.|||+|++||+|||+ ..+||+||++||+|++.. ++++|+|+|++.++++
T Consensus 89 ~~~~~i~v~~la~~l~~~l~q~yt~--~~rP~gv~~liaG~D~~~~~~gp~Ly~~Dp~G~~~~e~~~~a~Gsgs~~a~~~ 166 (248)
T 3mi0_A 89 YDRRDVTGRQLANVYAQTLGTIFTE--QAKPYEVELCVAEVAHYGETKRPELYRITYDGSIADEPHFVVMGGTTEPIANA 166 (248)
T ss_dssp SCGGGCCHHHHHHHHHHHHHHHHHH--SSSCCCEEEEEEECCCTTCCCCCEEEEECTTSCEEEESSEEEESSCHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhcc--CCCCceEEEEEEEEcCCCCCCCCEEEEECCCeEEeecccEEEECccHHHHHHH
Confidence 99 9999999999999 77889997 6899999999999994 137999999999999995 9999999999999999
Q ss_pred HHhhhccCCc-HHHHHHHHHHHHHHH-------h--cCCCcEEEEEEEcCC---CEEEcCHHHHHHHHHHHHHHHH
Q 025716 174 LEKNYKETSG-QETIKLAIRALLEVV-------E--SGGKNIEVAVMTREK---GLKQLDEAEIDAMVAEIEAKKA 236 (249)
Q Consensus 174 Le~~~~~~~s-eeai~la~~~l~~~~-------~--~~~~~iei~~v~~~g---~~~~~~~~ei~~~l~~i~~~~~ 236 (249)
||++|+++|+ +||++++++||.++. + .+++++||++|+++| .|++++++||++++.+++..+.
T Consensus 167 Le~~y~~~mt~eeai~la~~aL~~~~~~~~~~~~~~~~~~~iev~vv~~~g~~~~f~~l~~~ei~~~l~~~~~~~~ 242 (248)
T 3mi0_A 167 LKESYAENASLTDALRIAVAALRAGSADTSGGDQPTLGVASLEVAVLDANRPRRAFRRITGSALQALLVDQESPQS 242 (248)
T ss_dssp HHHHCCTTCCHHHHHHHHHHHHHHC------------CCTTEEEEEEETTSSSCCEEECCHHHHHHTC--------
T ss_pred HHhhcCCCCCHHHHHHHHHHHHHHHHhhcccCcccccCCCcEEEEEEECCCCcccEEECCHHHHHHHHHHcCCCcc
Confidence 9999999999 999999999999998 3 367899999999985 4999999999999999876553
No 21
>3h4p_a Proteasome subunit beta; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=1.2e-47 Score=324.29 Aligned_cols=206 Identities=24% Similarity=0.389 Sum_probs=187.2
Q ss_pred CCcEEEEEeCCEEEEEEeccCCcc-cccCCcccceEEecCCEEEEEecChhhHHHHHHHHHHHHHHhhhhcCCCCCHHHH
Q 025716 30 GNAAVGVRGTDTIVLGVEKKSTVK-LQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYI 108 (249)
Q Consensus 30 G~t~igi~~~dgVvla~d~~~~~~-l~~~~~~~Ki~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l 108 (249)
|+|+|||+++||||||+|+|.++. ++.+++.+||++|++|++|+++|+.+|++.|+++++.+++.|+++++++++++.+
T Consensus 1 Gtt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~l 80 (219)
T 3h4p_a 1 MTTTVGLICDDAVILATDKRASLGNLVADKEAKKLYKIDDYIAMTIAGSVGDAQAIVRLLIAEAKLYKMRTGRNIPPLAC 80 (219)
T ss_dssp -CCEEEEEETTEEEEECCCCEEETTEEEETTCCCEEEEETTEEEECCSCHHHHHHHHHHHHHHHHHHHHHTSSCCCHHHH
T ss_pred CccEEEEEECCEEEEEEcCCcccCCEeeccccceeEEecCCEEEEeeEcHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 799999999999999999999874 6677899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhccCCCccceeEEEEEeeeCCCCCceEEEECCCCceeccc-eEeecCCchHHHHHHHhhhccCCc-HHH
Q 025716 109 TRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWK-ANATGRNSNSMREFLEKNYKETSG-QET 186 (249)
Q Consensus 109 a~~ls~~~~~~t~~~~~rP~gv~~ivaG~d~~~~gp~Ly~iDp~G~~~~~~-~~aiG~g~~~a~~~Le~~~~~~~s-eea 186 (249)
++++++++|.+ +.|||+|++||||||+ .+||+||.+||+|++.+++ ++++|+|++.++++||+.|+++|+ +||
T Consensus 81 a~~l~~~~~~~----~~~P~~v~~lvaG~D~-~~gp~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~~ms~eea 155 (219)
T 3h4p_a 81 ATLLSNILHSS----RMFPFLTQIIIGGYDL-LEGAKLFSLDPLGGMNEEKTFTATGSGSPIAYGVLEAGYDRDMSVEEG 155 (219)
T ss_dssp HHHHHHHHHHT----TTTTCCCCCEEEEEET-TTEEEEEEECSSCCEEECSSEEEESTTHHHHHHHHHTSCCTTCCHHHH
T ss_pred HHHHHHHHHHh----cCCCceEEEEEEEEeC-CCCcEEEEECCCCceEecCCEEEEcCCHHHHHHHHHHhcCCCCCHHHH
Confidence 99999999876 3589999999999996 5899999999999999999 999999999999999999999999 999
Q ss_pred HHHHHHHHHHHHhc---CCCcEEEEEEEcCCCEEEcCHHHHHHHHHHHHHHHHHHHHh
Q 025716 187 IKLAIRALLEVVES---GGKNIEVAVMTREKGLKQLDEAEIDAMVAEIEAKKAAAEAA 241 (249)
Q Consensus 187 i~la~~~l~~~~~~---~~~~iei~~v~~~g~~~~~~~~ei~~~l~~i~~~~~~~~~~ 241 (249)
++++++||..+.++ ++++++|++|+++| |++++++||+++|+++++++..++..
T Consensus 156 ~~la~~al~~~~~rd~~sg~~i~v~vi~~~g-~~~l~~~ei~~~l~~~~~~~~~~~~~ 212 (219)
T 3h4p_a 156 IKLALNALKSAMERDTFSGNGISLAVITKDG-VKIFEDEEIEKILDSMKAKPKKKTTK 212 (219)
T ss_dssp HHHHHHHHHHHHTSCSSCCSCCCEEEEETTE-EEECCHHHHHHHHHHCC---------
T ss_pred HHHHHHHHHHHHhhcCCCCCcEEEEEEeCCC-eEEcCHHHHHHHHHHhhcccccccch
Confidence 99999999999976 46799999999998 99999999999999999877555544
No 22
>1yar_H Proteasome beta subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_H 1yau_H 3ipm_H 1pma_B 3jrm_H 3c92_H 3c91_H 3jse_H 3jtl_H
Probab=100.00 E-value=9.5e-46 Score=312.17 Aligned_cols=200 Identities=24% Similarity=0.406 Sum_probs=184.3
Q ss_pred HHHccCCcEEEEEeCCEEEEEEeccCCc-ccccCCcccceEEecCCEEEEEecChhhHHHHHHHHHHHHHHhhhhcCCCC
Q 025716 25 EAVRKGNAAVGVRGTDTIVLGVEKKSTV-KLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPV 103 (249)
Q Consensus 25 kav~~G~t~igi~~~dgVvla~d~~~~~-~l~~~~~~~Ki~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i 103 (249)
.++.+|+|+|||+++||||||+|+|.++ .++.+++.+||++|++|++++++|+.+|++.|.++++.+++.|++++++++
T Consensus 3 ~~~~~Gtt~vgi~~~dgVvlaaD~r~~~g~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~ 82 (217)
T 1yar_H 3 QTLETGTTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRYMKAELELYRLQRRVNM 82 (217)
T ss_dssp ------CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred CCCCCCccEEEEEeCCEEEEEEcCCCCCCCEEecCccCCeEEeCCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 4678999999999999999999999987 677888999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhhhccCCCccceeEEEEEeeeCCCCCceEEEECCCCceeccceEeecCCchHHHHHHHhhhccCCc
Q 025716 104 TVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKETSG 183 (249)
Q Consensus 104 ~~~~la~~ls~~~~~~t~~~~~rP~gv~~ivaG~d~~~~gp~Ly~iDp~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s 183 (249)
+++.+++++++.++.+ +.|||+|++|||||| +||+||.+||+|++.+++++|+|+|++.++++||+.|+++|+
T Consensus 83 ~v~~la~~l~~~~~~~----r~rp~~v~~lvaG~D---~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~s 155 (217)
T 1yar_H 83 PIEAVATLLSNMLNQV----KYMPYMVQLLVGGID---TAPHVFSIDAAGGSVEDIYASTGSGSPFVYGVLESQYSEKMT 155 (217)
T ss_dssp CHHHHHHHHHHHHHHT----TTSCCCEEEEEEEES---SSEEEEEECTTCCEEEESEEEESTTHHHHHHHHHHHCCTTCC
T ss_pred CHHHHHHHHHHHHHhc----CCCCceEEEEEEEEC---CCCEEEEECCCCCeEecCEEEEcCCHHHHHHHHHhhcccCCC
Confidence 9999999999999764 368999999999998 589999999999999999999999999999999999999999
Q ss_pred -HHHHHHHHHHHHHHHhc---CCCcEEEEEEEc-CCCEEEcCHHHHHHHHHHHH
Q 025716 184 -QETIKLAIRALLEVVES---GGKNIEVAVMTR-EKGLKQLDEAEIDAMVAEIE 232 (249)
Q Consensus 184 -eeai~la~~~l~~~~~~---~~~~iei~~v~~-~g~~~~~~~~ei~~~l~~i~ 232 (249)
+||++++++||..+.++ ++++++|++|++ +| +++++++||++++.+++
T Consensus 156 ~eea~~la~~al~~~~~rd~~s~~~i~v~vi~~~~g-~~~~~~~ei~~~~~~~~ 208 (217)
T 1yar_H 156 VDEGVDLVIRAISAAKQRDSASGGMIDVAVITRKDG-YVQLPTDQIESRIRKLG 208 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCCSCCEEEEEETTTE-EEECCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhccCCCCCcEEEEEEECCCC-EEEcCHHHHHHHHHHHH
Confidence 99999999999999875 477899999999 76 99999999999998875
No 23
>1j2q_H Proteasome beta subunit; ubiquitin, CP, hydrolase; HET: CIB; 2.83A {Archaeoglobus fulgidus} SCOP: d.153.1.4
Probab=100.00 E-value=1.7e-45 Score=307.19 Aligned_cols=195 Identities=28% Similarity=0.433 Sum_probs=184.4
Q ss_pred CcEEEEEeCCEEEEEEeccCCc-ccccCCcccceEEecCCEEEEEecChhhHHHHHHHHHHHHHHhhhhcCCCCCHHHHH
Q 025716 31 NAAVGVRGTDTIVLGVEKKSTV-KLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYIT 109 (249)
Q Consensus 31 ~t~igi~~~dgVvla~d~~~~~-~l~~~~~~~Ki~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la 109 (249)
+|+|||+++||||||+|+|.++ .++.+++.+||++|++|++++++|+.+|++.|+++++.+++.|+++++++++++.++
T Consensus 1 tt~vgi~~~dgVvlaad~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a 80 (202)
T 1j2q_H 1 TTTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIKIEANLYEIRRERKPTVRAIA 80 (202)
T ss_dssp CCEEEEEETTEEEEEEECCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CcEEEEEeCCEEEEEECCCcCcCCEEeeccccCEEEcCCCEEEEecccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 6899999999999999999987 677788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhccCCCccceeEEEEEeeeCCCCCceEEEECCCCceeccc-eEeecCCchHHHHHHHhhhccCCc-HHHH
Q 025716 110 RYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWK-ANATGRNSNSMREFLEKNYKETSG-QETI 187 (249)
Q Consensus 110 ~~ls~~~~~~t~~~~~rP~gv~~ivaG~d~~~~gp~Ly~iDp~G~~~~~~-~~aiG~g~~~a~~~Le~~~~~~~s-eeai 187 (249)
+++++.++.+ +.|||+|++||||||+ +||+||.+||+|++.+++ ++++|+|++.++++||+.|+++|+ +||+
T Consensus 81 ~~l~~~~~~~----r~rp~~~~~lvaG~D~--~gp~Ly~id~~G~~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s~eea~ 154 (202)
T 1j2q_H 81 TLTSNLLNSY----RYFPYLVQLLIGGIDS--EGKSIYSIDPIGGAIEEKDIVATGSGSLTAYGVLEDRFTPEIGVDEAV 154 (202)
T ss_dssp HHHHHHHHHT----TTSCCCEEEEEEEEET--TEEEEEEECTTCCEEEESSEEEESTTHHHHHHHHHHHCCTTCCHHHHH
T ss_pred HHHHHHHHhh----CCCCceEEEEEEEEeC--CCCEEEEECCCCCeeecCCEEEEcCCHHHHHHHHHhhcCCCcCHHHHH
Confidence 9999999764 3689999999999994 689999999999999999 999999999999999999999999 9999
Q ss_pred HHHHHHHHHHHhc---CCCcEEEEEEEcCCCEEEcCHHHHHHHHHHHH
Q 025716 188 KLAIRALLEVVES---GGKNIEVAVMTREKGLKQLDEAEIDAMVAEIE 232 (249)
Q Consensus 188 ~la~~~l~~~~~~---~~~~iei~~v~~~g~~~~~~~~ei~~~l~~i~ 232 (249)
+++++||..+.++ ++++++|++|+++| +++++++|+++++.+++
T Consensus 155 ~la~~al~~~~~~d~~s~~~i~v~vi~~~g-~~~l~~~ei~~~~~~~~ 201 (202)
T 1j2q_H 155 ELAVRAIYSAMKRDSASGDGIDVVKITEDE-FYQYSPEEVEQILAKFR 201 (202)
T ss_dssp HHHHHHHHHHHTTCTTSCSCEEEEEECSSC-EEECHHHHHHHHGGGTT
T ss_pred HHHHHHHHHHHhcCCCCCCcEEEEEEeCCC-eEEeCHHHHHHHHHHhh
Confidence 9999999999875 47789999999997 99999999999998764
No 24
>3nzj_K Proteasome component PRE2; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_K* 3nzx_K* 4b4t_5
Probab=100.00 E-value=9.8e-46 Score=323.54 Aligned_cols=208 Identities=17% Similarity=0.317 Sum_probs=189.6
Q ss_pred hHHHHHccCCcEEEEEeCCEEEEEEeccCCc-ccccCCcccceEEecCCEEEEEecChhhHHHHHHHHHHHHHHhhhhcC
Q 025716 22 YALEAVRKGNAAVGVRGTDTIVLGVEKKSTV-KLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVE 100 (249)
Q Consensus 22 ya~kav~~G~t~igi~~~dgVvla~d~~~~~-~l~~~~~~~Ki~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~ 100 (249)
++.+++.+|+|+|||+++||||||+|+|.+. .++.+++.+||++|++|++++++|..+|++.|.++++.+++.|+++++
T Consensus 67 ~~~~~v~~GtT~vgik~~dGVVlAaD~r~t~G~li~~~~~~KI~~I~d~i~~~~aG~~AD~~~l~~~lr~~~~~y~~~~~ 146 (287)
T 3nzj_K 67 DCKIKIAHGTTTLAFRFQGGIIVAVDSRATAGNWVASQTVKKVIEINPFLLGTMAGGAADCQFWETWLGSQCRLHELREK 146 (287)
T ss_dssp ---------CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECEECHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred chhhheccCceEEEEEECCEEEEEEccccccCceeecCCcceEEEEcCcEEEEecCCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 7788999999999999999999999999987 677788999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhhhccCCCccceeEEEEEeeeCCCCCceEEEECCCCceeccceEeecCCchHHHHHHHhhhcc
Q 025716 101 DPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKE 180 (249)
Q Consensus 101 ~~i~~~~la~~ls~~~~~~t~~~~~rP~gv~~ivaG~d~~~~gp~Ly~iDp~G~~~~~~~~aiG~g~~~a~~~Le~~~~~ 180 (249)
++++++.+++++++++|.+++ +||++++||||||+ ++||+||.+||+|++.+++++++|+|+..++++||+.|++
T Consensus 147 ~~isv~~la~~ls~~l~~~r~----~p~~v~~lvaG~D~-~~gp~Ly~iDp~G~~~~~~~~AiGsgs~~a~~~Le~~y~~ 221 (287)
T 3nzj_K 147 ERISVAAASKILSNLVYQYKG----AGLSMGTMICGYTR-KEGPTIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSNYKW 221 (287)
T ss_dssp SCCCHHHHHHHHHHHHHHTTT----SCCCEEEEEEEEET-TTEEEEEEEETTCCEEECSEEEESTTHHHHHHHHHTSCCT
T ss_pred CCCCHHHHHHHHHHHHHhhcC----CCceEEEEEEEEcC-CCCCEEEEECCCceEEEcCeEEEecchHHHHHHHHHhhcC
Confidence 999999999999999988765 49999999999997 6899999999999999999999999999999999999999
Q ss_pred CCc-HHHHHHHHHHHHHHHhc---CCCcEEEEEEEcCCCEEEcCHHHHHHHHHHHHHHH
Q 025716 181 TSG-QETIKLAIRALLEVVES---GGKNIEVAVMTREKGLKQLDEAEIDAMVAEIEAKK 235 (249)
Q Consensus 181 ~~s-eeai~la~~~l~~~~~~---~~~~iei~~v~~~g~~~~~~~~ei~~~l~~i~~~~ 235 (249)
+|+ +||++++++||..+..+ ++++++|++|+++| ++++++++|++++.++++++
T Consensus 222 dms~eEAi~la~~aL~~a~~rD~~sg~~i~V~vItkdg-~~~l~~~ev~~~l~~~~e~~ 279 (287)
T 3nzj_K 222 DLSVEDALYLGKRSILAAAHRDAYSGGSVNLYHVTEDG-WIYHGNHDVGELFWKVKEEE 279 (287)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTE-EEEEEEEEHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhhCcCCCCceEEEEEeCCC-EEEeCHHHHHHHHHHHHHhh
Confidence 999 99999999999999875 46899999999998 99999999999999998764
No 25
>1q5r_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, hydrolase; 3.10A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_H
Probab=100.00 E-value=1.3e-45 Score=323.77 Aligned_cols=212 Identities=18% Similarity=0.225 Sum_probs=193.9
Q ss_pred HHHHHccCCcEEEEEeCCEEEEEEeccCCc-ccccCCcccceEEecCCEEEEEecChhhHHHHHHHHHHHHHHhhhhcCC
Q 025716 23 ALEAVRKGNAAVGVRGTDTIVLGVEKKSTV-KLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVED 101 (249)
Q Consensus 23 a~kav~~G~t~igi~~~dgVvla~d~~~~~-~l~~~~~~~Ki~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~ 101 (249)
|++|+++|+|+|||+++||||||+|++.++ +++.+++.+||++|++|++|+++|+.+|++.|+++++.+++.|++++++
T Consensus 58 a~~Av~~GtTiVgIk~kdGVVlAaD~r~t~G~li~~~~~~KI~~I~~~i~~~~aG~~aD~~~l~~~~r~~~~~y~~~~g~ 137 (294)
T 1q5r_H 58 SGDLAPHGTTIVALTYKGGVLLAGDRRATQGNLIASRDVEAVYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEGV 137 (294)
T ss_dssp --CCSCBCCCEEEEECSSCEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHhcCceEEEEEECCEEEEEEcCccccCceeecCCcceEEEECCcEEEEEeecHHHHHHHHHHHHHHHHHhhHhhCC
Confidence 889999999999999999999999999987 6888889999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhhhccCCCccceeEEEEEeeeCCCCC-----ceEEEECCCCceecc--ceEeecCCchHHHHHH
Q 025716 102 PVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGV-----PSLYQTDPSGTFSAW--KANATGRNSNSMREFL 174 (249)
Q Consensus 102 ~i~~~~la~~ls~~~~~~t~~~~~rP~gv~~ivaG~d~~~~g-----p~Ly~iDp~G~~~~~--~~~aiG~g~~~a~~~L 174 (249)
+++++.++++|++++|.++++. .|||+|++||+|||+ +++ |+||.+||+|++.++ +++++|+|+.+++++|
T Consensus 138 ~isv~~la~~la~~l~~~~~~~-~rp~~v~lLvaG~D~-~~g~~~~~p~Ly~iDp~G~~~e~~~~~~AiGsgs~~a~~~L 215 (294)
T 1q5r_H 138 PLTFDGKANRLASMVRGNLGAA-MQGLAVVPLLVGYDL-DADDESRAGRIVSYDVVGGRYEERAGYHAVGSGSLFAKSAL 215 (294)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHH-TTTTCEEEEEEEECT-TCSCTTSCEEEEEECSSSCEEECCSSEEEESTTHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhhh-cCCcceEEEEEEEeC-CCCcCCCCCEEEEECCCCeEEecCCCeEEEecCcHHHHHHH
Confidence 9999999999999999988754 799999999999996 546 999999999999999 9999999999999999
Q ss_pred HhhhccCCc-HHHHHHHHHHHHHHHhcC---C--CcE-----EEEEEEcCCCEEEcCHHHHHHHHHHHHHHHHH
Q 025716 175 EKNYKETSG-QETIKLAIRALLEVVESG---G--KNI-----EVAVMTREKGLKQLDEAEIDAMVAEIEAKKAA 237 (249)
Q Consensus 175 e~~~~~~~s-eeai~la~~~l~~~~~~~---~--~~i-----ei~~v~~~g~~~~~~~~ei~~~l~~i~~~~~~ 237 (249)
|+.|+++|+ +||++++++||..+.+++ + +++ +|++|+++| +++++++|+++++.++.+++.+
T Consensus 216 e~~y~~~ms~eEAi~la~~aL~~a~~rD~~sG~~~~ir~i~~ev~vI~~~g-~~~l~~~ei~~~l~~i~~~~~~ 288 (294)
T 1q5r_H 216 KKIYSPDSDEETALRAAIESLYDAADDDSATGGPDLTRGIYPTAVTITQAG-AVHVSEETTSELARRIVAERTE 288 (294)
T ss_dssp HHHCCSSCCHHHHHHHHHHHHHHHHHHCTTTCCCBTTTTBCCEEEEEETTE-EEECCHHHHHHHHHHHCC----
T ss_pred HHhccCCCCHHHHHHHHHHHHHHHHhhccccCCchhhcccCCEEEEEECCC-EEEcCHHHHHHHHHHHHHHhhh
Confidence 999999999 999999999999998753 1 235 999999998 9999999999999999765443
No 26
>2jay_A Proteasome; hydrolase; 1.99A {Mycobacterium tuberculosis} PDB: 3mka_C 3mi0_C* 2fhg_H* 2fhh_H 3krd_C* 3mfe_G 3hfa_H* 3h6i_C 3h6f_C 3hf9_H 3mfe_H
Probab=100.00 E-value=1.8e-45 Score=322.55 Aligned_cols=229 Identities=16% Similarity=0.193 Sum_probs=175.6
Q ss_pred CCCCCCcccCCCCcc-----hh--hhhHHHHHccCCcEEEEEeCCEEEEEEeccCCcc-cccCCcccceEEecCCEEEEE
Q 025716 3 RYDRAITVFSPDGHL-----FQ--VEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVK-LQDSRSVRKIVSLDNHIALAC 74 (249)
Q Consensus 3 ~yd~~~~~fsp~G~l-----~Q--veya~kav~~G~t~igi~~~dgVvla~d~~~~~~-l~~~~~~~Ki~~I~~~i~~~~ 74 (249)
+|+..+....||.-. +| +|||++ +.+|+|+|||+++||||||+|+|.+++ ++.+++.+||++|++|++|++
T Consensus 24 ~f~~~~~~~~~~~l~~~~~~~~~~~~ya~~-v~~GtTiVgi~~kdGVVlAaD~r~t~g~li~~~~~~KI~~i~d~i~~~~ 102 (291)
T 2jay_A 24 SFTDFLRRQAPELLPASISGGAPLAGGDAQ-LPHGTTIVALKYPGGVVMAGDRRSTQGNMISGRDVRKVYITDDYTATGI 102 (291)
T ss_dssp -----------------------------------CCEEEEEETTEEEEEECCC--------CCCCCCEEEEETTEEEEE
T ss_pred cHHHHhhhcChhhccccccccCcCcccccc-ccCCcEEEEEEECCEEEEEECCCccCCCeeecCCcccEEEeCCcEEEEE
Confidence 456666666666432 22 689999 999999999999999999999999885 677788999999999999999
Q ss_pred ecChhhHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHhhhccCCCccceeEEEEEeeeCCCCC-----ceEEEE
Q 025716 75 AGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGV-----PSLYQT 149 (249)
Q Consensus 75 sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~t~~~~~rP~gv~~ivaG~d~~~~g-----p~Ly~i 149 (249)
+|..+|++.|+++++.+++.|++.++++++++.++++++++++.+++ ...|||+|++||||||+ +++ |+||.+
T Consensus 103 aG~~aD~~~l~~~lr~~~~~y~~~~~~~i~v~~la~~la~~l~~~~~-~~~rpf~v~~lvaG~D~-~g~~~~~~p~Ly~i 180 (291)
T 2jay_A 103 AGTAAVAVEFARLYAVELEHYEKLEGVPLTFAGKINRLAIMVRGNLA-AAMQGLLALPLLAGYDI-HASDPQSAGRIVSF 180 (291)
T ss_dssp ESCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHTCHH-HHHHTCCCEEEEEEECT-TCSCSTTCEEEEEE
T ss_pred cccHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHhhh-hhccccceeEEEEEEeC-CCCcCCCCCEEEEE
Confidence 99999999999999999999999999999999999999999998875 45789999999999996 555 999999
Q ss_pred CCCCcee--ccceEeecCCchHHHHHHHhhhccCCc-HHHHHHHHHHHHHHHhcC--CCcE--------EEEEEEcCCCE
Q 025716 150 DPSGTFS--AWKANATGRNSNSMREFLEKNYKETSG-QETIKLAIRALLEVVESG--GKNI--------EVAVMTREKGL 216 (249)
Q Consensus 150 Dp~G~~~--~~~~~aiG~g~~~a~~~Le~~~~~~~s-eeai~la~~~l~~~~~~~--~~~i--------ei~~v~~~g~~ 216 (249)
||+|++. +++++++|+|+.+++++||+.|+++|+ +||++++++||..+.+++ .+++ +|++|+++| +
T Consensus 181 Dp~G~~~e~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eEAi~la~~aL~~a~~~D~~sg~~e~vr~~~~~v~vi~~dg-~ 259 (291)
T 2jay_A 181 DAAGGWNIEEEGYQAVGSGSLFAKSSMKKLYSQVTDGDSGLRVAVEALYDAADDDSATGGPDLVRGIFPTAVIIDADG-A 259 (291)
T ss_dssp CTTSCEEECSSSEEEESTTHHHHHHHHHHHGGGCCSHHHHHHHHHHHHHHC----------------CCEEEEEETTE-E
T ss_pred CCCCcEEecCCCEEEEecCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhhCCCCCCcccccccCCEEEEEECCC-e
Confidence 9999999 899999999999999999999999999 999999999999988753 2334 699999998 9
Q ss_pred EEcCHHHHHHHHHHHHHHH
Q 025716 217 KQLDEAEIDAMVAEIEAKK 235 (249)
Q Consensus 217 ~~~~~~ei~~~l~~i~~~~ 235 (249)
++++++||++++.++.+.+
T Consensus 260 ~~l~~~ei~~~~~~~~~~~ 278 (291)
T 2jay_A 260 VDVPESRIAELARAIIESR 278 (291)
T ss_dssp EECCHHHHHHHHHHC----
T ss_pred EEcCHHHHHHHHHHHHHhh
Confidence 9999999999999986643
No 27
>1ryp_L 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_L 1vsy_L 1z7q_L 3l5q_P 1g65_K* 1g0u_K* 1jd2_K* 2f16_K* 2fak_K* 2fny_K* 2gpl_K* 2zcy_K* 3bdm_K* 3d29_K* 3dy3_K* 3dy4_K* 3e47_K* 3gpj_K* 3gpt_K* 3gpw_K* ...
Probab=100.00 E-value=7e-45 Score=305.71 Aligned_cols=199 Identities=17% Similarity=0.330 Sum_probs=188.3
Q ss_pred CcEEEEEeCCEEEEEEeccCCc-ccccCCcccceEEecCCEEEEEecChhhHHHHHHHHHHHHHHhhhhcCCCCCHHHHH
Q 025716 31 NAAVGVRGTDTIVLGVEKKSTV-KLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYIT 109 (249)
Q Consensus 31 ~t~igi~~~dgVvla~d~~~~~-~l~~~~~~~Ki~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la 109 (249)
+|+|||+++||||||+|+|.++ .++.+++.+||++|++|++++++|+.+|++.|.++++.+++.|+++++++++++.++
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (212)
T 1ryp_L 1 TTTLAFRFQGGIIVAVDSRATAGNWVASQTVKRVIEINPFLLGTMAGGAADCQFWETWLGSQCRLHELREKERISVAAAS 80 (212)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECCBCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CcEEEEEeCCEEEEEEcCCcccCCeEecCcccceeeeCCcEEEEccccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 6899999999999999999988 688888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhccCCCccceeEEEEEeeeCCCCCceEEEECCCCceeccceEeecCCchHHHHHHHhhhccCCc-HHHHH
Q 025716 110 RYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKETSG-QETIK 188 (249)
Q Consensus 110 ~~ls~~~~~~t~~~~~rP~gv~~ivaG~d~~~~gp~Ly~iDp~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s-eeai~ 188 (249)
+++++++|.|++. ||+|++||||||+ +++|+||.+||+|++.+++++|+|+|+.+++++||+.|+++|| +||++
T Consensus 81 ~~l~~~~~~~~~~----p~~v~~lvaG~D~-~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~s~eea~~ 155 (212)
T 1ryp_L 81 KILSNLVYQYKGA----GLSMGTMICGYTR-KEGPTIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSNYKWDLSVEDALY 155 (212)
T ss_dssp HHHHHHHHHTTTS----CCCBEEEEEEEET-TTEEEEEEEETTCCEEECSEEEESTTHHHHHHHHHHHCCTTCCHHHHHH
T ss_pred HHHHHHHHhhCCC----CceEEEEEEEEeC-CCCCEEEEEcCCceeEecCCEEEcCCHHHHHHHHHhhCCCCCCHHHHHH
Confidence 9999999988863 8999999999996 5799999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHhc---CCCcEEEEEEEcCCCEEEcCHHHHHHHHHHHHHHH
Q 025716 189 LAIRALLEVVES---GGKNIEVAVMTREKGLKQLDEAEIDAMVAEIEAKK 235 (249)
Q Consensus 189 la~~~l~~~~~~---~~~~iei~~v~~~g~~~~~~~~ei~~~l~~i~~~~ 235 (249)
++++||..+.++ ++.+++|++|+++| +++++++|+++++.+++++.
T Consensus 156 la~~al~~~~~rd~~s~~~i~v~vi~~~g-~~~~~~~ei~~~~~~~~~~~ 204 (212)
T 1ryp_L 156 LGKRSILAAAHRDAYSGGSVNLYHVTEDG-WIYHGNHDVGELFWKVKEEE 204 (212)
T ss_dssp HHHHHHHHHHHHBTTCCSEEEEEEEETTE-EEEEEEEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCceEEEEEcCCc-eEEECHHHHHHHHHHHHHhh
Confidence 999999999875 57899999999998 99999999999999886543
No 28
>1iru_L 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_K* 3une_K 3unf_K* 3unh_K
Probab=100.00 E-value=8.1e-45 Score=303.57 Aligned_cols=198 Identities=15% Similarity=0.281 Sum_probs=186.0
Q ss_pred CcEEEEEeCCEEEEEEeccCCc-ccccCCcccceEEecCCEEEEEecChhhHHHHHHHHHHHHHHhhhhcCCCCCHHHHH
Q 025716 31 NAAVGVRGTDTIVLGVEKKSTV-KLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYIT 109 (249)
Q Consensus 31 ~t~igi~~~dgVvla~d~~~~~-~l~~~~~~~Ki~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la 109 (249)
+|+|||+++||||||+|+|.++ .++.+++.+||++|++|++++++|+.+|++.|.++++.+++.|+++++++++++.++
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (204)
T 1iru_L 1 TTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAAS 80 (204)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECCBCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CeEEEEEeCCEEEEEEcCCcccCCEEEcCcccceEEcCCCEEEEccCcHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 6899999999999999999988 677788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhccCCCccceeEEEEEeeeCCCCCceEEEECCCCceeccceEeecCCchHHHHHHHhhhccCCc-HHHHH
Q 025716 110 RYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKETSG-QETIK 188 (249)
Q Consensus 110 ~~ls~~~~~~t~~~~~rP~gv~~ivaG~d~~~~gp~Ly~iDp~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s-eeai~ 188 (249)
+++++.+|.+++ +||+|++|||||| ++||+||.+||+|++.+++++|+|+|+..++++||+.|+++|+ +||++
T Consensus 81 ~~l~~~~~~~r~----~~~~v~~lvaG~D--~~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~s~eea~~ 154 (204)
T 1iru_L 81 KLLANMVYQYKG----MGLSMGTMICGWD--KRGPGLYYVDSEGNRISGATFSVGSGSVYAYGVMDRGYSYDLEVEQAYD 154 (204)
T ss_dssp HHHHHHHHTTTT----SCCCBEEEEEEEC--SSSEEEEEEESSSCEEECSEEEESTTHHHHHHHHHTTCCTTCCHHHHHH
T ss_pred HHHHHHHHHhCC----CCeeEEEEEEEEe--CCCCEEEEECCCCcEEEeCCEEEEcCHHHHHHHHhccCCCCCCHHHHHH
Confidence 999999988753 5899999999999 4799999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHhc---CCCcEEEEEEEcCCCEEEcCHHHHHHHHHHHHHHH
Q 025716 189 LAIRALLEVVES---GGKNIEVAVMTREKGLKQLDEAEIDAMVAEIEAKK 235 (249)
Q Consensus 189 la~~~l~~~~~~---~~~~iei~~v~~~g~~~~~~~~ei~~~l~~i~~~~ 235 (249)
++++||..+.++ ++++++|++|+++| +++++++|+++++++++.++
T Consensus 155 l~~~al~~~~~rd~~s~~~i~v~vi~~~g-~~~l~~~ei~~~~~~~~~~~ 203 (204)
T 1iru_L 155 LARRAIYQATYRDAYSGGAVNLYHVREDG-WIRVSSDNVADLHEKYSGST 203 (204)
T ss_dssp HHHHHHHHHHHHBTTCCSEEEEEEECSSC-EEEEEEEEHHHHHHHHTC--
T ss_pred HHHHHHHHHHHhCccCCCceEEEEEeCCc-eEEeCHHHHHHHHHHhccCC
Confidence 999999999864 57899999999998 99999999999999986543
No 29
>1q5q_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4
Probab=100.00 E-value=1.9e-44 Score=307.69 Aligned_cols=202 Identities=19% Similarity=0.233 Sum_probs=188.1
Q ss_pred CcEEEEEeCCEEEEEEeccCCc-ccccCCcccceEEecCCEEEEEecChhhHHHHHHHHHHHHHHhhhhcCCCCCHHHHH
Q 025716 31 NAAVGVRGTDTIVLGVEKKSTV-KLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYIT 109 (249)
Q Consensus 31 ~t~igi~~~dgVvla~d~~~~~-~l~~~~~~~Ki~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la 109 (249)
+|+|||+++||||||+|+|.++ +++.+++.+||++|++|++|+++|+.+|++.|+++++.+++.|+++++++++++.++
T Consensus 1 tT~vgi~~~dgVVlaaD~r~~~g~l~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (235)
T 1q5q_H 1 TTIVALTYKGGVLLAGDRRATQGNLIASRDVEKVYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEGVPLTFDGKA 80 (235)
T ss_dssp CCEEEEECSSCEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CeEEEEEECCEEEEEECCCCCcCCEEecCCcCcEEEeCCcEEEEcCCcHHHHHHHHHHHHHHHHHhHHHhCCCCCHHHHH
Confidence 6899999999999999999987 688888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhccCCCccceeEEEEEeeeCCCCC-----ceEEEECCCCceecc--ceEeecCCchHHHHHHHhhhccCC
Q 025716 110 RYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGV-----PSLYQTDPSGTFSAW--KANATGRNSNSMREFLEKNYKETS 182 (249)
Q Consensus 110 ~~ls~~~~~~t~~~~~rP~gv~~ivaG~d~~~~g-----p~Ly~iDp~G~~~~~--~~~aiG~g~~~a~~~Le~~~~~~~ 182 (249)
++++++++.++++. .|||+|++||||||+ +++ |+||.+||+|++.++ +++++|+|+.+++++||+.|+++|
T Consensus 81 ~~l~~~~~~~~~~~-~rp~~v~~lvaG~D~-~~g~~~~~p~Ly~idp~G~~~~~~~~~~aiGsgs~~a~~~Le~~~~~~m 158 (235)
T 1q5q_H 81 NRLASMVRGNLGAA-MQGLAVVPLLVGYDL-DADDESRAGRIVSYDVVGGRYEERAGYHAVGSGSLFAKSALKKIYSPDS 158 (235)
T ss_dssp HHHHHHHHTTHHHH-TTTCCEEEEEEEECT-TCSSTTSCEEEEEECTTSCEEECCSSEEEESTTHHHHHHHHHHHCCTTC
T ss_pred HHHHHHHHHHHHhh-hcccceEEEEEEEEC-CCCccCCCCEEEEECCCCceEEeCCCeEEECCCHHHHHHHHHhhcCCCC
Confidence 99999999988764 799999999999996 546 999999999999999 999999999999999999999999
Q ss_pred c-HHHHHHHHHHHHHHHhcC---C--CcE-----EEEEEEcCCCEEEcCHHHHHHHHHHHHHHH
Q 025716 183 G-QETIKLAIRALLEVVESG---G--KNI-----EVAVMTREKGLKQLDEAEIDAMVAEIEAKK 235 (249)
Q Consensus 183 s-eeai~la~~~l~~~~~~~---~--~~i-----ei~~v~~~g~~~~~~~~ei~~~l~~i~~~~ 235 (249)
+ +||++++++||..+.+++ + .++ +|++|+++| +++++++|+++++.++++++
T Consensus 159 s~eeA~~la~~al~~a~~~d~~sg~~~~i~~~~~ev~vi~~~g-~~~l~~~ei~~~~~~~~~~~ 221 (235)
T 1q5q_H 159 DEETALRAAIESLYDAADDDSATGGPDLTRGIYPTAVTITQAG-AVHVSEETTSELARRIVAER 221 (235)
T ss_dssp CHHHHHHHHHHHHHHHHHHCTTTCCCBTTTTBCCEEEEEETTE-EEECCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhhCcccCCcccccccccEEEEEeCCC-eEEeCHHHHHHHHHHHHHHH
Confidence 9 999999999999998753 2 123 999999998 99999999999999996654
No 30
>1iru_N 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_M* 3une_M 3unf_M* 3unh_M
Probab=100.00 E-value=6e-45 Score=307.57 Aligned_cols=199 Identities=16% Similarity=0.169 Sum_probs=185.0
Q ss_pred HHHHccCCcEEEEEeCCEEEEEEeccCCc-ccccCCcccceEEecCCEEEEEecChhhHHHHHHHHHHHHHHhhh-hcCC
Q 025716 24 LEAVRKGNAAVGVRGTDTIVLGVEKKSTV-KLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRL-TVED 101 (249)
Q Consensus 24 ~kav~~G~t~igi~~~dgVvla~d~~~~~-~l~~~~~~~Ki~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~-~~~~ 101 (249)
++|+.+|+|+|||+++||||||+|+|.+. .++.+++.+||++|++|++++++|+.+|++.|.++++.+++.|++ ++++
T Consensus 2 ~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~ 81 (219)
T 1iru_N 2 QNPMVTGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQYLKQVLGQMVIDEELLGDGH 81 (219)
T ss_dssp CSCCSEECCCEEEEETTEEEEEEECCEEETTEEEECSCCCEEEETTTEEEEEEEEHHHHHHHHHHHHHHHHHHHHHCSSC
T ss_pred CCCccCCceEEEEEeCCEEEEEECCccccCcEEecCCCCceEEeCCCEEEEeccCHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 36788999999999999999999999987 677778999999999999999999999999999999999999998 9999
Q ss_pred CCCHHHHHHHHHHHHHhhhccCCCccceeEEEEEeeeCCCCCceEEEECCCCceeccceEeecCCchHHHHHHHhhhcc-
Q 025716 102 PVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKE- 180 (249)
Q Consensus 102 ~i~~~~la~~ls~~~~~~t~~~~~rP~gv~~ivaG~d~~~~gp~Ly~iDp~G~~~~~~~~aiG~g~~~a~~~Le~~~~~- 180 (249)
+++++.+++++++.++ +++++.|||+|++||||||+ ++|+||.+||+|++.+++++++|+|++.++++||+.|++
T Consensus 82 ~~~v~~la~~l~~~ly--~~r~~~~P~~v~~lvaG~D~--~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ 157 (219)
T 1iru_N 82 SYSPRAIHSWLTRAMY--SRRSKMNPLWNTMVIGGYAD--GESFLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQ 157 (219)
T ss_dssp CCCHHHHHHHHHHHHH--HHHHTTCCCCEEEEEEEEET--TEEEEEEECSSCCEEECSEEECTTHHHHTHHHHHHHHTSC
T ss_pred CCCHHHHHHHHHHHHH--HhcccCCCceEEEEEEEEEC--CCCEEEEECCCCCeEECCeEEECccHHHHHHHHHhhcCCC
Confidence 9999999999999985 45567899999999999994 699999999999999999999999999999999999999
Q ss_pred -CCc-HHHHHHHHHHHHHHHhc---CCCcEEEEEEEcCCCEEEcCHHHHHHH
Q 025716 181 -TSG-QETIKLAIRALLEVVES---GGKNIEVAVMTREKGLKQLDEAEIDAM 227 (249)
Q Consensus 181 -~~s-eeai~la~~~l~~~~~~---~~~~iei~~v~~~g~~~~~~~~ei~~~ 227 (249)
+|+ +||++++++||..+.++ ++.+++|++|+++| ++.+++++|+..
T Consensus 158 ~~mt~eea~~l~~~al~~~~~~d~~sg~~i~v~vi~~~g-~~~~~~~~i~~~ 208 (219)
T 1iru_N 158 PVLSQTEARDLVERCMRVLYYRDARSYNRFQTATVTEKG-VEIEGPLSTETN 208 (219)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHBTTCCSCEEEEEEETTE-EEEEEEECCCCC
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEcCCC-EEEcCCeeccch
Confidence 999 99999999999999875 47899999999998 999988777543
No 31
>1iru_H 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_N* 3une_N
Probab=100.00 E-value=2.8e-44 Score=300.55 Aligned_cols=194 Identities=18% Similarity=0.295 Sum_probs=182.7
Q ss_pred CcEEEEEeCCEEEEEEeccCCcc-cccCCcccceEEecCCEEEEEecChhhHHHHHHHHHHHHHHhhhhcCCCCCHHHHH
Q 025716 31 NAAVGVRGTDTIVLGVEKKSTVK-LQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYIT 109 (249)
Q Consensus 31 ~t~igi~~~dgVvla~d~~~~~~-l~~~~~~~Ki~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la 109 (249)
+|+|||+++||||||+|+|.+++ ++.+++.+||++|++|++++++|+.+|++.|.++++.+++.|+++++++++++.++
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (205)
T 1iru_H 1 TTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAA 80 (205)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred CcEEEEEeCCEEEEEEcCCcccCcEEecCCcCceEEcCCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 68999999999999999999986 77778899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhccCCCccceeEEEEEeeeCCCCCceEEEECCCCceeccceEeecCCchHHHHHHHhhhccCCc-HHHHH
Q 025716 110 RYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKETSG-QETIK 188 (249)
Q Consensus 110 ~~ls~~~~~~t~~~~~rP~gv~~ivaG~d~~~~gp~Ly~iDp~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s-eeai~ 188 (249)
+++++.+|.|++ ||++++||||||+ ++||+||.+||+|++.+++++++|+|+..++++||+.|+++|+ +||++
T Consensus 81 ~~l~~~~~~~~~-----p~~~~~lvaG~D~-~~gp~ly~~d~~G~~~~~~~~a~Gsgs~~a~~~Le~~~~~~~s~eea~~ 154 (205)
T 1iru_H 81 SLFKEMCYRYRE-----DLMAGIIIAGWDP-QEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYREGMTKEECLQ 154 (205)
T ss_dssp HHHHHHHHHTTT-----TCCEEEEEEEEET-TTEEEEEEECTTSCCEECSEEEESGGGGGGHHHHHHHCCTTCCHHHHHH
T ss_pred HHHHHHHHhcCc-----CccEEEEEEEEeC-CCCCEEEEECCCCcEEecCEEEECCCHHHHHHHHHHhcCCCCCHHHHHH
Confidence 999999998874 9999999999996 5799999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHhc---CCCcEEEEEEEcCCC-EEEcCHHHHHHHHHH
Q 025716 189 LAIRALLEVVES---GGKNIEVAVMTREKG-LKQLDEAEIDAMVAE 230 (249)
Q Consensus 189 la~~~l~~~~~~---~~~~iei~~v~~~g~-~~~~~~~ei~~~l~~ 230 (249)
++++||..+.++ ++++++|++|+++|. +++++++||++++++
T Consensus 155 l~~~al~~~~~~d~~s~~~i~v~vi~~~g~~~~~l~~~ei~~~~~~ 200 (205)
T 1iru_H 155 FTANALALAMERDGSSGGVIRLAAIAESGVERQVLLGDQIPKFAVA 200 (205)
T ss_dssp HHHHHHHHHHHHBTTCCSCEEEEEEETTEEEEEEECGGGSCCCCCC
T ss_pred HHHHHHHHHHHhccccCCcEEEEEEeCCCeEEEEeChHHhhHHHhh
Confidence 999999999875 478999999999984 678999999887754
No 32
>1ryp_N 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_N* 1jd2_M* 1g65_M 1vsy_N 1z7q_N 2f16_M* 2fak_M* 2fny_M* 2gpl_M* 3d29_M* 3dy3_M* 3dy4_M* 3e47_M* 3gpj_M* 3gpt_M* 3gpw_M* 3hye_M* 3l5q_R 3mg0_M* 3mg4_M* ...
Probab=100.00 E-value=6.8e-45 Score=310.03 Aligned_cols=200 Identities=14% Similarity=0.248 Sum_probs=186.2
Q ss_pred HHHHccCCcEEEEEeCCEEEEEEeccCCc-ccccCCcccceEEecCCEEEEEecChhhHHHHHHHHHHHHHHhhh-----
Q 025716 24 LEAVRKGNAAVGVRGTDTIVLGVEKKSTV-KLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRL----- 97 (249)
Q Consensus 24 ~kav~~G~t~igi~~~dgVvla~d~~~~~-~l~~~~~~~Ki~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~----- 97 (249)
++|+++|+|+|||+++||||||+|+|.+. .++.+++.+||++|++|++|+++|..+|++.|.++++.+++.|++
T Consensus 2 ~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~ 81 (233)
T 1ryp_N 2 QQPIVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENAYDNPLA 81 (233)
T ss_dssp CCCCEEECCEEEEEETTEEEEEEECCEEETTEEEESCCCCEEEETTTEEEEEEEEHHHHHHHHHHHHHHHHHHHTTCTTT
T ss_pred cccccCCceEEEEEECCEEEEEEcCccccCCeeecCCcCceEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHhhccchh
Confidence 35788999999999999999999999987 577788999999999999999999999999999999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHHhhhccCCCccceeEEEEEeeeCCCCCceEEEECCCCceeccceEeecCCchHHHHHHHhh
Q 025716 98 TVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKN 177 (249)
Q Consensus 98 ~~~~~i~~~~la~~ls~~~~~~t~~~~~rP~gv~~ivaG~d~~~~gp~Ly~iDp~G~~~~~~~~aiG~g~~~a~~~Le~~ 177 (249)
+++++++++.+++++++.+ |+++++.|||+|++||+|||+ +++|+||.+||+|++.+++++++|+|+..++++||+.
T Consensus 82 ~~~~~~~v~~la~~l~~~l--y~~r~~~~P~~v~~lvaG~D~-~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~ 158 (233)
T 1ryp_N 82 DAEEALEPSYIFEYLATVM--YQRRSKMNPLWNAIIVAGVQS-NGDQFLRYVNLLGVTYSSPTLATGFGAHMANPLLRKV 158 (233)
T ss_dssp TTTTSCCHHHHHHHHHHHH--HHHHHTTCCCCEEEEEEEECT-TSCEEEEEEETTCCEECCSEEECTHHHHHHHHHHTTT
T ss_pred hcCCCCCHHHHHHHHHHHH--HHhcCCCCCceEEEEEEEEcC-CCCEEEEEECCCcCeEEcCEEEECcCHHHHHHHHHHh
Confidence 8999999999999999998 455567899999999999996 5699999999999999999999999999999999999
Q ss_pred hcc-----CCc-HHHHHHHHHHHHHHHhc---CCCcEEEEEEEcC-CCEEEcCHHHHHHH
Q 025716 178 YKE-----TSG-QETIKLAIRALLEVVES---GGKNIEVAVMTRE-KGLKQLDEAEIDAM 227 (249)
Q Consensus 178 ~~~-----~~s-eeai~la~~~l~~~~~~---~~~~iei~~v~~~-g~~~~~~~~ei~~~ 227 (249)
|++ +|+ +||++++++||..+.++ ++.+++|++|+++ | ++.++++||+++
T Consensus 159 ~~~~~~~~~ms~eea~~la~~al~~~~~rd~~sg~~i~v~vi~~~~g-~~~~~~~~i~~~ 217 (233)
T 1ryp_N 159 VDRESDIPKTTVQVAEEAIVNAMRVLYYRDARSSRNFSLAIIDKNTG-LTFKKNLQVENM 217 (233)
T ss_dssp CSSGGGGGGCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTTE-EEEEEEEECCSC
T ss_pred hccccccCCCCHHHHHHHHHHHHHHHHHhcccCCCcEEEEEEECCCC-eEEcChHhcccc
Confidence 999 999 99999999999999875 4789999999999 6 999988887665
No 33
>1ryp_K 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_K 1g0u_J* 1jd2_J* 1g65_J 1vsy_K 1z7q_K 2f16_J* 2fak_J* 2fny_J* 2gpl_J* 2zcy_J* 3bdm_J* 3d29_J* 3dy3_J* 3dy4_J* 3e47_J* 3gpj_J* 3gpt_J* 3gpw_J* 3hye_J* ...
Probab=100.00 E-value=3.8e-43 Score=292.09 Aligned_cols=189 Identities=21% Similarity=0.297 Sum_probs=174.9
Q ss_pred CCcEEEEEeCCEEEEEEeccCCccc-ccCCcccceEEecCCEEEEEecChhhHHHHHHHHHHHHHHhhhhcCCCCCHHHH
Q 025716 30 GNAAVGVRGTDTIVLGVEKKSTVKL-QDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYI 108 (249)
Q Consensus 30 G~t~igi~~~dgVvla~d~~~~~~l-~~~~~~~Ki~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l 108 (249)
++|+|||+++||||||+|+|.++++ +.+++.+||++|++|++++++|+.+|++.|.++++.+++.|+++++++++++.+
T Consensus 1 Mtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~l 80 (198)
T 1ryp_K 1 MDIILGIRVQDSVILASSKAVTRGISVLKDSDDKTRQLSPHTLMSFAGEAGDTVQFAEYIQANIQLYSIREDYELSPQAV 80 (198)
T ss_dssp CCCEEEEECSSCEEEEEECCEEETTEEEESCCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHH
T ss_pred CceEEEEEECCEEEEEECCCcccCCEEEecCCCceEEeCCCEEEEeccCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 6899999999999999999998754 446789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhccCCCccceeEEEEEeeeCCCCCceEEEECCCCceeccceEeecCCchHHHHHHHhhhccCCc-HHHH
Q 025716 109 TRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKETSG-QETI 187 (249)
Q Consensus 109 a~~ls~~~~~~t~~~~~rP~gv~~ivaG~d~~~~gp~Ly~iDp~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s-eeai 187 (249)
++++++.++.+++. .+||+|++||||||+.+++|+||.+||+|++.+++++++|+|+..++++||+.|+++|+ +||+
T Consensus 81 a~~l~~~l~~~~~~--r~p~~v~~lvaG~D~~~~~p~Ly~idp~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s~eea~ 158 (198)
T 1ryp_K 81 SSFVRQELAKSIRS--RRPYQVNVLIGGYDKKKNKPELYQIDYLGTKVELPYGAHGYSGFYTFSLLDHHYRPDMTTEEGL 158 (198)
T ss_dssp HHHHHHHHHHHTTS--SSCCCEEEEEEEEETTTTEEEEEEECTTCCEEECSEEECTTHHHHHHHHHHHHCCTTCCHHHHH
T ss_pred HHHHHHHHHHhccc--CCCceEEEEEEEEeCCCCCcEEEEECCCCCEEECCEEEEcccHHHHHHHHHhhcCCCCCHHHHH
Confidence 99999999888742 25999999999999423789999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHHhc---CCCcEEEEEEEcCCCEEEcCH
Q 025716 188 KLAIRALLEVVES---GGKNIEVAVMTREKGLKQLDE 221 (249)
Q Consensus 188 ~la~~~l~~~~~~---~~~~iei~~v~~~g~~~~~~~ 221 (249)
+++++||..+.++ ++++++|++|+++| ++++++
T Consensus 159 ~l~~~al~~~~~~d~~s~~~i~v~vi~~~g-~~~~~~ 194 (198)
T 1ryp_K 159 DLLKLCVQELEKRMPMDFKGVIVKIVDKDG-IRQVDD 194 (198)
T ss_dssp HHHHHHHHHHHHHCSBCCCCEEEEEEETTE-EEEECC
T ss_pred HHHHHHHHHHHHhCccCCCceEEEEEcCCC-EEEecc
Confidence 9999999999875 57899999999998 888765
No 34
>1ryp_H 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 3nzj_N* 3nzw_N* 3nzx_N* 1vsy_H 3l5q_B 1g65_N* 1fnt_H 1g0u_N* 1jd2_N* 1z7q_H 2f16_N* 2fak_N* 2fny_N* 2gpl_N* 2zcy_N* 3bdm_N* 3d29_N* 3dy3_N* 3dy4_N* 3e47_N* ...
Probab=100.00 E-value=2.7e-43 Score=294.59 Aligned_cols=184 Identities=17% Similarity=0.269 Sum_probs=174.7
Q ss_pred HHHHccCCcEEEEEeCCEEEEEEeccCCcc-cccCCcccceEEecCCEEEEEecChhhHHHHHHHHHHHHHHhhhhcCCC
Q 025716 24 LEAVRKGNAAVGVRGTDTIVLGVEKKSTVK-LQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDP 102 (249)
Q Consensus 24 ~kav~~G~t~igi~~~dgVvla~d~~~~~~-l~~~~~~~Ki~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~ 102 (249)
++|+++|+|+|||+++||||||+|+|.+++ ++.+++.+||++|++|++++++|..+|++.|.++++.+++.|++++++
T Consensus 3 ~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~- 81 (205)
T 1ryp_H 3 KGEVSLGASIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIADIVQYHLELYTSQYGT- 81 (205)
T ss_dssp TTCCBCCCCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHSS-
T ss_pred CCCCcCCceEEEEEeCCEEEEEEcCCcccCcEEEcCCcCceEEcCCCEEEEccCCHHHHHHHHHHHHHHHHHHHHHhCC-
Confidence 578999999999999999999999999886 777788999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhhhccCCCccceeEEEEEeeeCCCCCceEEEECCCCceeccceEeecCCchHHHHHHHhhhccCC
Q 025716 103 VTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKETS 182 (249)
Q Consensus 103 i~~~~la~~ls~~~~~~t~~~~~rP~gv~~ivaG~d~~~~gp~Ly~iDp~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~ 182 (249)
++++.+++++++.+|.|++. |++++||+|||+ ++||+||.+||+|++.+++++++|+|+..++++||+.|+++|
T Consensus 82 ~~v~~la~~l~~~~~~~~~~-----~~~~~lvaG~D~-~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~ 155 (205)
T 1ryp_H 82 PSTETAASVFKELCYENKDN-----LTAGIIVAGYDD-KNKGEVYTIPLGGSVHKLPYAIAGSGSTFIYGYCDKNFRENM 155 (205)
T ss_dssp CCHHHHHHHHHHHHHHTTTT-----CCEEEEEEEEET-TTEEEEEEECTTSCCEEESEEEESGGGGGGHHHHHHHCCTTC
T ss_pred CCHHHHHHHHHHHHHhhhcC-----ceEEEEEEEEec-CCCcEEEEECCCccEEecCEEEEEecHHHHHHHHHhccCCCC
Confidence 99999999999999988652 999999999996 578999999999999999999999999999999999999999
Q ss_pred c-HHHHHHHHHHHHHHHhc---CCCcEEEEEEEcCC
Q 025716 183 G-QETIKLAIRALLEVVES---GGKNIEVAVMTREK 214 (249)
Q Consensus 183 s-eeai~la~~~l~~~~~~---~~~~iei~~v~~~g 214 (249)
+ +||++++++||..+.++ ++++++|++|+++|
T Consensus 156 s~eea~~l~~~al~~a~~~d~~sg~~i~v~vi~~~g 191 (205)
T 1ryp_H 156 SKEETVDFIKHSLSQAIKWDGSSGGVIRMVVLTAAG 191 (205)
T ss_dssp CHHHHHHHHHHHHHHHHHHBTTCCSCEEEEEEETTE
T ss_pred CHHHHHHHHHHHHHHHHHhCCccCCeEEEEEEcCCC
Confidence 9 99999999999999875 47899999999998
No 35
>1iru_M 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_L* 3une_L 3unf_L* 3unh_L
Probab=100.00 E-value=1.5e-42 Score=291.58 Aligned_cols=186 Identities=17% Similarity=0.368 Sum_probs=172.9
Q ss_pred HccCCcEEEEEeCCEEEEEEeccCCccc-ccCCcccceEEecCCEEEEEecChhhHHHHHHHHHHHHHHhhhhcCCCCCH
Q 025716 27 VRKGNAAVGVRGTDTIVLGVEKKSTVKL-QDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTV 105 (249)
Q Consensus 27 v~~G~t~igi~~~dgVvla~d~~~~~~l-~~~~~~~Ki~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~ 105 (249)
+++|+|+|||+++||||||+|+|.++++ +.+++.+||++|++|++++++|+.+|++.|+++++.+++.|++++++++++
T Consensus 6 v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v 85 (213)
T 1iru_M 6 VFNGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKAMTT 85 (213)
T ss_dssp CCCCCEEEEEEETTEEEEEEECCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred cCCCCcEEEEEeCCEEEEEECCCcccCCEEecCCCCcEEEcCCCEEEEccccHHHHHHHHHHHHHHHHHHHHhcCCCCCH
Confidence 4689999999999999999999998865 445789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhccCCCccceeEEEEEeeeCCCCCceEEEECCCCceeccceEeecCCchHHHHHHHhh--------
Q 025716 106 EYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKN-------- 177 (249)
Q Consensus 106 ~~la~~ls~~~~~~t~~~~~rP~gv~~ivaG~d~~~~gp~Ly~iDp~G~~~~~~~~aiG~g~~~a~~~Le~~-------- 177 (249)
+.+++++++++ |+++ .|||+|++||||||+ +++|+||.+||+|++.+++++|+|+|+..++++||+.
T Consensus 86 ~~la~~l~~~~--y~~r--~~P~~v~~lvaG~D~-~g~p~Ly~id~~G~~~~~~~~aiGsg~~~a~~~Le~~~~~~~~~~ 160 (213)
T 1iru_M 86 GAIAAMLSTIL--YSRR--FFPYYVYNIIGGLDE-EGKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQN 160 (213)
T ss_dssp HHHHHHHHHHH--HHTT--TSCCCEEEEEEEECT-TSCEEEEEECTTSCEEEESEEEEETTHHHHHHHHHHHTTCCSCSS
T ss_pred HHHHHHHHHHH--HhhC--CCCceEEEEEEEEcC-CCCEEEEEECCCCCEEECCEEEEeeCHHHHHHHHhhccccccccc
Confidence 99999999998 5654 699999999999996 5679999999999999999999999999999999999
Q ss_pred -hccCCc-HHHHHHHHHHHHHHHhc---CCCcEEEEEEEcCCCEEE
Q 025716 178 -YKETSG-QETIKLAIRALLEVVES---GGKNIEVAVMTREKGLKQ 218 (249)
Q Consensus 178 -~~~~~s-eeai~la~~~l~~~~~~---~~~~iei~~v~~~g~~~~ 218 (249)
|+++|+ +||++++++||..+.++ ++.+++|++|+++| ++.
T Consensus 161 ~~~~~~s~eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g-~~~ 205 (213)
T 1iru_M 161 VEHVPLSLDRAMRLVKDVFISAAERDVYTGDALRICIVTKEG-IRE 205 (213)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHHHBTTSCSEEEEEEEETTE-EEE
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHHhCCccCCcEEEEEEcCCC-eEE
Confidence 888999 99999999999999875 47899999999998 543
No 36
>3nzj_H Proteasome component PUP1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_H* 3nzx_H* 4b4t_2
Probab=100.00 E-value=1.8e-42 Score=299.32 Aligned_cols=190 Identities=23% Similarity=0.287 Sum_probs=171.1
Q ss_pred HHHHccCCcEEEEEeCCEEEEEEeccCCc-ccccCCcccceEEecCCEEEEEecChhhHHHHHHHHHHHHHHhhhhcCCC
Q 025716 24 LEAVRKGNAAVGVRGTDTIVLGVEKKSTV-KLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDP 102 (249)
Q Consensus 24 ~kav~~G~t~igi~~~dgVvla~d~~~~~-~l~~~~~~~Ki~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~ 102 (249)
.||+++|+|+|||+++||||||+|+|.++ .++.+++.+||++|++|++|+++|+.+|++.|.++++.+++.|+++++++
T Consensus 23 ~kav~~GtTivgi~~kdGVVlAaD~r~t~g~li~~~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~lr~~~~~~~~~~~~~ 102 (261)
T 3nzj_H 23 PKATSTGTTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSRE 102 (261)
T ss_dssp -------CCEEEEEETTEEEEEEECCEEETTEEEETTCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred CcccccCceEEEEEECCEEEEEEcCCcccCCeeccCCcceEEEEcCCEEEEeccCHHHHHHHHHHHHHHHHHhHHhhCCC
Confidence 68899999999999999999999999988 56777889999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhhhccCCCccceeEEEEEeeeCCCCCceEEEECCCCceeccceEeecCCchHHHHHHHhhhccCC
Q 025716 103 VTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKETS 182 (249)
Q Consensus 103 i~~~~la~~ls~~~~~~t~~~~~rP~gv~~ivaG~d~~~~gp~Ly~iDp~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~ 182 (249)
++++.+++++++.++.| .|||++++||||||+ +||+||.+||+|++.+++++|+|+|+..++++||+.|+++|
T Consensus 103 ~~v~~~a~~l~~~l~~~-----~~~~gv~llvaG~D~--~Gp~Ly~iDp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~m 175 (261)
T 3nzj_H 103 PRVVSALQMLKQHLFKY-----QGHIGAYLIVAGVDP--TGSHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHWKQDL 175 (261)
T ss_dssp CCHHHHHHHHHHHHHHT-----TTCSCEEEEEEEEET--TEEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHHCCSSC
T ss_pred CCHHHHHHHHHHHHHHh-----cCcccEEEEEEEEeC--CCCEEEEECCCccEEecCeEEeccchHHHHHHHHHHhccCC
Confidence 99999999999988654 369999999999995 68999999999999999999999999999999999999999
Q ss_pred c-HHHHHHHHHHHHHHHhc---CCCcEEEEEEEcCCCEEEcC
Q 025716 183 G-QETIKLAIRALLEVVES---GGKNIEVAVMTREKGLKQLD 220 (249)
Q Consensus 183 s-eeai~la~~~l~~~~~~---~~~~iei~~v~~~g~~~~~~ 220 (249)
+ +||++++++||..+..+ ++++++|++|+++|.++++.
T Consensus 176 s~eEA~~la~~al~~a~~rD~~sg~~iev~vI~kdg~~~~~~ 217 (261)
T 3nzj_H 176 TKEEAIKLASDAIQAGIWNDLGSGSNVDVCVMEIGKDAEYLR 217 (261)
T ss_dssp CHHHHHHHHHHHHHHHHHHCTTCCSCEEEEEEETTSCEEEEE
T ss_pred CHHHHHHHHHHHHHHHHhhCCCCCCcEEEEEEECCCcEEEec
Confidence 9 99999999999999865 47899999999998666543
No 37
>1g0u_M Proteasome component PRE4; ubiquitin, degradation, protease, NTN-hydrolase; 2.40A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 2zcy_M* 3bdm_M* 3mg6_M* 3mg7_M* 3mg8_M* 3nzj_M* 3nzw_M* 3nzx_M*
Probab=100.00 E-value=5e-44 Score=310.30 Aligned_cols=205 Identities=13% Similarity=0.240 Sum_probs=187.6
Q ss_pred hhhhHHHHHccCCcEEEEEeCCEEEEEEeccCCc-ccccCCcccceEEecCCEEEEEecChhhHHHHHHHHHHHHHHhhh
Q 025716 19 QVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTV-KLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRL 97 (249)
Q Consensus 19 Qveya~kav~~G~t~igi~~~dgVvla~d~~~~~-~l~~~~~~~Ki~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~ 97 (249)
..+.+++++.+|+|+|||+++||||||+|+|.+. .++.+++.+||++|++|++|+++|+.+|++.|++++|.+++.|++
T Consensus 30 ~~~~~~~av~~GtT~vgi~~~dgVVlAaD~r~t~g~~i~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~lr~~~~~~~~ 109 (266)
T 1g0u_M 30 PMVNTQQPIVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENAY 109 (266)
T ss_dssp ----CCCCCEEECCEEEEEETTEEEEEEECCEEETTEEEECCCCCEEECTTSEEEEEEEEHHHHHHHHHHHHHHHHHHHT
T ss_pred chhhhccCcccCceEEEEEECCEEEEEEcCCcccCceeecCCcCcEEEcCCCEEEEeccCHHHHHHHHHHHHHHHHHhhh
Confidence 3566788899999999999999999999999987 577778899999999999999999999999999999999999998
Q ss_pred -----hcCCCCCHHHHHHHHHHHHHhhhccCCCccceeEEEEEeeeCCCCCceEEEECCCCceeccceEeecCCchHHHH
Q 025716 98 -----TVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMRE 172 (249)
Q Consensus 98 -----~~~~~i~~~~la~~ls~~~~~~t~~~~~rP~gv~~ivaG~d~~~~gp~Ly~iDp~G~~~~~~~~aiG~g~~~a~~ 172 (249)
+++++++++.+++++++++ |+++++.|||+|++||||||+ +++|+||.+||+|++.+++++++|+|+..+++
T Consensus 110 ~~~~~~~~~~~~v~~la~~l~~~l--y~~r~~~~P~~v~~lvaG~D~-~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~ 186 (266)
T 1g0u_M 110 DNPLADAEEALEPSYIFEYLATVM--YQRRSKMNPLWNAIIVAGVQS-NGDQFLRYVNLLGVTYSSPTLATGFGAHMANP 186 (266)
T ss_dssp TCTTTTTTTSCCHHHHHHHHHHHH--HHHHHTTCCCCEEEEEEEECT-TSCEEEEEEETTCCEECCSEEECTHHHHTHHH
T ss_pred ccchhhcCCCCCHHHHHHHHHHHH--HHhccCCCCceEEEEEEEEcC-CCCEEEEEECCCCCEEeCCEEEEccCHHHHHH
Confidence 8999999999999999998 455567899999999999996 56999999999999999999999999999999
Q ss_pred HHHhhhcc-----CCc-HHHHHHHHHHHHHHHhc---CCCcEEEEEEEcC-CCEEEcCHHHHHHH
Q 025716 173 FLEKNYKE-----TSG-QETIKLAIRALLEVVES---GGKNIEVAVMTRE-KGLKQLDEAEIDAM 227 (249)
Q Consensus 173 ~Le~~~~~-----~~s-eeai~la~~~l~~~~~~---~~~~iei~~v~~~-g~~~~~~~~ei~~~ 227 (249)
+||+.|++ +|+ +||++++++||..+.++ ++.+++|++|+++ | ++.++++||+++
T Consensus 187 ~Le~~~~~~~~~~~ms~eeA~~la~~al~~a~~rd~~sg~~i~v~vI~k~~g-~~~~~~~ei~~~ 250 (266)
T 1g0u_M 187 LLRKVVDRESDIPKTTVQVAEEAIVNAMRVLYYRDARSSRNFSLAIIDKNTG-LTFKKNLQVENM 250 (266)
T ss_dssp HHTTTCSSGGGGGGCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTTE-EEEEEEEECCCC
T ss_pred HHHHhhcccccCCCCCHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEECCCC-eEEcCHHHhhhh
Confidence 99999999 999 99999999999999875 4789999999999 7 999988877655
No 38
>3unf_H Proteasome subunit beta type-10; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_H
Probab=100.00 E-value=2.4e-42 Score=294.39 Aligned_cols=187 Identities=22% Similarity=0.319 Sum_probs=174.5
Q ss_pred CcEEEEEeCCEEEEEEeccCCccc-ccCCcccceEEecCCEEEEEecChhhHHHHHHHHHHHHHHhhhhcCCCCCHHHHH
Q 025716 31 NAAVGVRGTDTIVLGVEKKSTVKL-QDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYIT 109 (249)
Q Consensus 31 ~t~igi~~~dgVvla~d~~~~~~l-~~~~~~~Ki~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la 109 (249)
||+|||+++||||||+|+|.++++ +.+++.+||++|++|++|+++|..+|++.+.++++.++++|+++++++++++.++
T Consensus 1 TT~vgi~~kdgVVlaaD~r~t~g~~v~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (234)
T 3unf_H 1 TTIAGLVFRDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADTEMTTRMAASKMELHALSTGREPRVATVT 80 (234)
T ss_dssp CEEEEEECSSEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHCSCCCHHHHH
T ss_pred CeEEEEEeCCEEEEEECCCcccCCEeccCccccEEEecCCEEEEecccHHHHHHHHHHHHHHHHhhHHhcCCCCCHHHHH
Confidence 689999999999999999998865 4567899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhccCCCccceeEEEEEeeeCCCCCceEEEECCCCceeccceEeecCCchHHHHHHHhhhccCCc-HHHHH
Q 025716 110 RYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKETSG-QETIK 188 (249)
Q Consensus 110 ~~ls~~~~~~t~~~~~rP~gv~~ivaG~d~~~~gp~Ly~iDp~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s-eeai~ 188 (249)
+++++.++.| .+||+|++||||||+ +||+||.+||+|++.+++++|+|+|+..++++||+.|+++|+ +||++
T Consensus 81 ~~l~~~l~~~-----~~p~~v~llvaG~D~--~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeA~~ 153 (234)
T 3unf_H 81 RILRQTLFRY-----QGHVGASLVVGGVDL--NGPQLYEVHPHGSYSRLPFTALGSGQGAAVALLEDRFQPNMTLEAAQE 153 (234)
T ss_dssp HHHHHHHHHT-----TTCSCEEEEEEEEET--TEEEEEEECTTSCEEECSEEEEETTHHHHHHHHHHHCCSSCCHHHHHH
T ss_pred HHHHHHHHhc-----CCCccEEEEEEEEeC--CCCEEEEECCCCCEEeccEEEEcCCchhhHHHHHhccCCCCCHHHHHH
Confidence 9999999765 369999999999994 699999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHhc---CCCcEEEEEEEcCCCEEEcCHHHHH
Q 025716 189 LAIRALLEVVES---GGKNIEVAVMTREKGLKQLDEAEID 225 (249)
Q Consensus 189 la~~~l~~~~~~---~~~~iei~~v~~~g~~~~~~~~ei~ 225 (249)
++++||..+..+ ++++++|++|+++| ++.+++.+++
T Consensus 154 la~~al~~~~~~D~~sg~~iev~vi~~dg-~~~l~~~~i~ 192 (234)
T 3unf_H 154 LLVEAITAGILSDLGSGGNVDACVITAGG-AKLQRALSTP 192 (234)
T ss_dssp HHHHHHHHHHHHBTTCCSCEEEEEEESSC-EEEEEEEECC
T ss_pred HHHHHHHHHHhhcCCCCCcEEEEEEECCC-EEEeCceecc
Confidence 999999999865 57899999999998 9988876653
No 39
>1iru_K 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_J* 3une_J 3unf_J* 3unh_J
Probab=100.00 E-value=8e-42 Score=284.79 Aligned_cols=187 Identities=16% Similarity=0.276 Sum_probs=172.1
Q ss_pred CCcEEEEEeCCEEEEEEeccCCc-ccccCCcccceEEecCCEEEEEecChhhHHHHHHHHHHHHHHhhhhcCCCCCHHHH
Q 025716 30 GNAAVGVRGTDTIVLGVEKKSTV-KLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYI 108 (249)
Q Consensus 30 G~t~igi~~~dgVvla~d~~~~~-~l~~~~~~~Ki~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l 108 (249)
++|+|||+++||||||+|+|.++ .++.+++.+||++|++|++++++|+.+|++.+.++++.+++.|+++++++++++.+
T Consensus 1 Mtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~ 80 (201)
T 1iru_K 1 MEYLIGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYIQKNVQLYKMRNGYELSPTAA 80 (201)
T ss_dssp CCCEEEEECSSEEEEEEECCEEETTEEEESSCCCEEECSSSEEEEEEESTTHHHHHHHHHHHHHHHHHHHHSSCCCHHHH
T ss_pred CceEEEEEeCCEEEEEEcCccccCcEEEccCcceEEEecCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 68999999999999999999988 57778899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhccCCCccceeEEEEEeeeCCCCCceEEEECCCCceeccceEeecCCchHHHHHHHhhhccCCc-HHHH
Q 025716 109 TRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKETSG-QETI 187 (249)
Q Consensus 109 a~~ls~~~~~~t~~~~~rP~gv~~ivaG~d~~~~gp~Ly~iDp~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s-eeai 187 (249)
++++++.+....+ ..|||+|++||+|||+ +++|+||.+||+|++.+++++++|+|++.++++||+.|+++|+ +||+
T Consensus 81 a~~~~~~l~~~~~--~~~p~~~~~lvaG~D~-~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~s~eea~ 157 (201)
T 1iru_K 81 ANFTRRNLADCLR--SRTPYHVNLLLAGYDE-HEGPALYYMDYLAALAKAPFAAHGYGAFLTLSILDRYYTPTISRERAV 157 (201)
T ss_dssp HHHHHHHHHHHHT--SSSCCCEEEEEEEEET-TTEEEEEEECTTCCEEECSEEEESHHHHHHHHHHHHHCCTTCCHHHHH
T ss_pred HHHHHHHHHHHHh--cCCCccEEEEEEEEeC-CCCeEEEEECCCcCeEECCEEEECCcHHHHHHHHHhcccCCCCHHHHH
Confidence 9999876522222 2379999999999996 5799999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHHhc---CCCcEEEEEEEcCCCEEEcC
Q 025716 188 KLAIRALLEVVES---GGKNIEVAVMTREKGLKQLD 220 (249)
Q Consensus 188 ~la~~~l~~~~~~---~~~~iei~~v~~~g~~~~~~ 220 (249)
+++++||..+.++ ++.+++|++|+++| +++++
T Consensus 158 ~l~~~al~~a~~rd~~sg~~i~v~vi~~~g-~~~~~ 192 (201)
T 1iru_K 158 ELLRKCLEELQKRFILNLPTFSVRIIDKNG-IHDLD 192 (201)
T ss_dssp HHHHHHHHHHHHTBCBCCCCEEEEEEETTE-EECCC
T ss_pred HHHHHHHHHHHhhccccCCceEEEEEcCCC-eEEee
Confidence 9999999999875 47799999999998 87765
No 40
>1ryp_M 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_M* 1jd2_L* 1g65_L 1vsy_M 1z7q_M 2f16_L* 2fak_L* 2fny_L* 2gpl_L* 3d29_L* 3dy3_L* 3dy4_L* 3e47_L* 3gpj_L* 3gpt_L* 3gpw_L* 3hye_L* 3l5q_Q 3mg0_L* 3mg4_L* ...
Probab=100.00 E-value=1.2e-41 Score=288.05 Aligned_cols=186 Identities=22% Similarity=0.406 Sum_probs=172.6
Q ss_pred HccCCcEEEEEeCCEEEEEEeccCCccc-ccCCcccceEEecCCEEEEEecChhhHHHHHHHHHHHHHHhhhhcC-CCCC
Q 025716 27 VRKGNAAVGVRGTDTIVLGVEKKSTVKL-QDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVE-DPVT 104 (249)
Q Consensus 27 v~~G~t~igi~~~dgVvla~d~~~~~~l-~~~~~~~Ki~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~-~~i~ 104 (249)
+++|+|+|||+++||||||+|+|.++++ +.+++.+||++|++|++++++|+.+|++.|.++++.+++.|+++++ ++++
T Consensus 6 v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~ 85 (222)
T 1ryp_M 6 GDNGGTILGIAGEDFAVLAGDTRNITDYSINSRYEPKVFDCGDNIVMSANGFAADGDALVKRFKNSVKWYHFDHNDKKLS 85 (222)
T ss_dssp CCCCCEEEEEECSSCEEEEEECCEEETTEEEESCCCCCEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHTTTCCCC
T ss_pred ccCCccEEEEEeCCEEEEEEecccccCCEecCCCcCcEEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 5789999999999999999999998865 4677899999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHHHHhhhccCCCccceeEEEEEeeeCCCCCceEEEECCCCceeccceEeecCCchHHHHHHHhh-------
Q 025716 105 VEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKN------- 177 (249)
Q Consensus 105 ~~~la~~ls~~~~~~t~~~~~rP~gv~~ivaG~d~~~~gp~Ly~iDp~G~~~~~~~~aiG~g~~~a~~~Le~~------- 177 (249)
++.+++++++.+ |+++ .|||+|++||||||+ +++|+||.+||+|++.+++++|+|+|+.+++++||+.
T Consensus 86 v~~la~~l~~~l--y~~r--~~P~~v~~ivaG~D~-~g~p~Ly~~dp~G~~~~~~~~a~Gsg~~~a~~~Le~~~~~~~~~ 160 (222)
T 1ryp_M 86 INSAARNIQHLL--YGKR--FFPYYVHTIIAGLDE-DGKGAVYSFDPVGSYEREQCRAGGAAASLIMPFLDNQVNFKNQY 160 (222)
T ss_dssp HHHHHHHHHHHH--HTTT--TSCCCEEEEEEEECT-TSCEEEEEECTTSCEEEESEEEEETTHHHHHHHHHHHTSCTTCB
T ss_pred HHHHHHHHHHHH--HhcC--CCCceEEEEEEEEcC-CCCeEEEEECCCcCEEecCEEEEcCcHHHHHHHHhccccccccc
Confidence 999999999998 4433 689999999999996 6679999999999999999999999999999999998
Q ss_pred ----------hccCCc-HHHHHHHHHHHHHHHhc---CCCcEEEEEEEcCCCEEE
Q 025716 178 ----------YKETSG-QETIKLAIRALLEVVES---GGKNIEVAVMTREKGLKQ 218 (249)
Q Consensus 178 ----------~~~~~s-eeai~la~~~l~~~~~~---~~~~iei~~v~~~g~~~~ 218 (249)
|+++|+ +||++++++||..+.++ ++++++|++|+++| ++.
T Consensus 161 ~~~~~~~~~~~~~~~s~eeA~~la~~al~~a~~rd~~sg~~i~v~vi~~~g-~~~ 214 (222)
T 1ryp_M 161 EPGTNGKVKKPLKYLSVEEVIKLVRDSFTSATERHIQVGDGLEILIVTKDG-VRK 214 (222)
T ss_dssp CTTSTTCSBCCCCCCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTE-EEE
T ss_pred ccccccccccCCCCCCHHHHHHHHHHHHHHHHHhcccCCCcEEEEEEcCCC-eEE
Confidence 889999 99999999999999875 47899999999998 543
No 41
>1iru_J 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_I* 3une_I 3unf_I* 3unh_I
Probab=100.00 E-value=1.2e-41 Score=284.58 Aligned_cols=185 Identities=18% Similarity=0.317 Sum_probs=170.0
Q ss_pred ccCCcEEEEEeCCEEEEEEeccCCccccc-CCcccceEEecCCEEEEEecChhhHHHHHHHHHHHHHHhhhhcCCCCCHH
Q 025716 28 RKGNAAVGVRGTDTIVLGVEKKSTVKLQD-SRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVE 106 (249)
Q Consensus 28 ~~G~t~igi~~~dgVvla~d~~~~~~l~~-~~~~~Ki~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~ 106 (249)
.+|+|+|||+++||||||+|+|.++++.. +++.+||++|++|++++++|+.+|++.|.++++.+++.|+++++++++++
T Consensus 6 ~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~ 85 (205)
T 1iru_J 6 YNGGAVMAMKGKNCVAIAADRRFGIQAQLVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRLKFRLNLYELKEGRQIKPY 85 (205)
T ss_dssp SSCCEEEEEECSSEEEEEEECCEEETTEEEESCCCCEEECSTTEEEECCSCHHHHHHHHHHHHHHHHHHHHHSSSCCCHH
T ss_pred CCCCeEEEEEeCCEEEEEECCccccCCeEeecCCccEEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHHhhcCCCCCHH
Confidence 68999999999999999999999886544 45899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhccCCCccceeEEEEEeeeCCCCCceEEEECCCCceecc-ceEeecCCchHHHHHHHhhhccCCc-H
Q 025716 107 YITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAW-KANATGRNSNSMREFLEKNYKETSG-Q 184 (249)
Q Consensus 107 ~la~~ls~~~~~~t~~~~~rP~gv~~ivaG~d~~~~gp~Ly~iDp~G~~~~~-~~~aiG~g~~~a~~~Le~~~~~~~s-e 184 (249)
.+++++++.+ |+++. .||+|++||+|||+.+++|+||.+||+|++.++ +++++|+|+..++++||+.|+++|+ +
T Consensus 86 ~la~~l~~~~--y~~r~--~P~~v~~lvaG~D~~~~~p~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~~~s~e 161 (205)
T 1iru_J 86 TLMSMVANLL--YEKRF--GPYYTEPVIAGLDPKTFKPFICSLDLIGCPMVTDDFVVSGTCAEQMYGMCESLWEPNMDPD 161 (205)
T ss_dssp HHHHHHHHHH--HTTTT--SCCSCCCEEEEECTTSCCEEEEEECTTCCEEECSSEEEEETTHHHHHHHHHHHCCSSCCHH
T ss_pred HHHHHHHHHH--HHhcC--CCceEEEEEEEEeCCCCCeEEEEECCCCCccccCCeeEeeeCHHHHHHHHhcccCCCCCHH
Confidence 9999999999 66653 499999999999942478999999999999665 6799999999999999999999999 9
Q ss_pred HHHHHHHHHHHHHHhc---CCCcEEEEEEEcCCCEE
Q 025716 185 ETIKLAIRALLEVVES---GGKNIEVAVMTREKGLK 217 (249)
Q Consensus 185 eai~la~~~l~~~~~~---~~~~iei~~v~~~g~~~ 217 (249)
||++++++||..+.++ ++.+++|++|+++| ++
T Consensus 162 ea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g-~~ 196 (205)
T 1iru_J 162 HLFETISQAMLNAVDRDAVSGMGVIVHIIEKDK-IT 196 (205)
T ss_dssp HHHHHHHHHHHHHGGGBTTSCSCEEEEEEESSB-EE
T ss_pred HHHHHHHHHHHHHHHhCcccCCceEEEEEcCCC-EE
Confidence 9999999999999876 47899999999998 43
No 42
>1ryp_J 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_I* 1g65_I 1vsy_J 2f16_I* 2fak_I* 2fny_I* 2gpl_I* 3d29_I* 3dy3_I* 3dy4_I* 3e47_I* 3gpj_I* 3gpt_I* 3gpw_I* 3hye_I* 3l5q_N 3mg0_I* 3mg4_I* 3oeu_I* 3oev_I* ...
Probab=100.00 E-value=2.9e-41 Score=282.00 Aligned_cols=185 Identities=18% Similarity=0.291 Sum_probs=169.9
Q ss_pred HccCCcEEEEEeCCEEEEEEeccCCccccc-CCcccceEEecCCEEEEEecChhhHHHHHHHHHHHHHHhhhhcCCCCCH
Q 025716 27 VRKGNAAVGVRGTDTIVLGVEKKSTVKLQD-SRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTV 105 (249)
Q Consensus 27 v~~G~t~igi~~~dgVvla~d~~~~~~l~~-~~~~~Ki~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~ 105 (249)
+.+|+|+|||+++||||||+|+|.+.++.. +++.+||++|+ |++++++|+.+|++.|.++++.+++.|++++++++++
T Consensus 5 ~~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~-~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v 83 (204)
T 1ryp_J 5 SINGGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFHYG-HVFLGITGLATDVTTLNEMFRYKTNLYKLKEERAIEP 83 (204)
T ss_dssp GSSCCEEEEEECSSEEEEEEECCEEETTEEEESCCCCEEEET-TEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred CCCCCeEEEEEeCCEEEEEEcCCcccCCEEeeCCcceEEEeC-CEEEEeeEcHHHHHHHHHHHHHHHHHHhhccCCCCCH
Confidence 468999999999999999999999886644 45899999999 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhccCCCccceeEEEEEeeeCCCCCceEEEECCCCceecc-ceEeecCCchHHHHHHHhhhccCCc-
Q 025716 106 EYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAW-KANATGRNSNSMREFLEKNYKETSG- 183 (249)
Q Consensus 106 ~~la~~ls~~~~~~t~~~~~rP~gv~~ivaG~d~~~~gp~Ly~iDp~G~~~~~-~~~aiG~g~~~a~~~Le~~~~~~~s- 183 (249)
+.+++++++.+ |+++. .||+|++||||||+.+++|+||.+||+|++..+ +++++|+|++.++++||+.|+++|+
T Consensus 84 ~~la~~l~~~~--y~~~~--~P~~v~~lvaG~D~~~~gp~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~~~s~ 159 (204)
T 1ryp_J 84 ETFTQLVSSSL--YERRF--GPYFVGPVVAGINSKSGKPFIAGFDLIGCIDEAKDFIVSGTASDQLFGMCESLYEPNLEP 159 (204)
T ss_dssp HHHHHHHHHHH--HTTTT--SCCCEEEEEEEECTTTCCEEEEEECTTCCEECCSSEEEEETTHHHHHHHHHHHCCSSCCH
T ss_pred HHHHHHHHHHH--HHhcC--CCceEEEEEEEEeCCCCceEEEEECCCCCccccCceeEeccCHHHHHHHHhhhcCCCcCH
Confidence 99999999999 77654 399999999999942478999999999999665 6799999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhc---CCCcEEEEEEEcCCCEE
Q 025716 184 QETIKLAIRALLEVVES---GGKNIEVAVMTREKGLK 217 (249)
Q Consensus 184 eeai~la~~~l~~~~~~---~~~~iei~~v~~~g~~~ 217 (249)
+||++++++||..+.++ ++.+++|++|+++| ++
T Consensus 160 eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g-~~ 195 (204)
T 1ryp_J 160 EDLFETISQALLNAADRDALSGWGAVVYIIKKDE-VV 195 (204)
T ss_dssp HHHHHHHHHHHHHHHTTBTTSCSCEEEEEEESSC-EE
T ss_pred HHHHHHHHHHHHHHHHhCcccCCcEEEEEEcCCC-EE
Confidence 99999999999999875 47899999999998 43
No 43
>1ryp_I 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1g0u_H* 1jd2_H* 1g65_H 1vsy_I 1z7q_I 2f16_H* 2fak_H* 2fny_H* 2gpl_H* 3d29_H* 3dy3_H* 3dy4_H* 3e47_H* 3gpj_H* 3gpt_H* 3gpw_H* 3hye_H* 3l5q_M 3mg0_H* 3mg4_H* ...
Probab=100.00 E-value=5e-41 Score=284.23 Aligned_cols=183 Identities=23% Similarity=0.273 Sum_probs=170.4
Q ss_pred CcEEEEEeCCEEEEEEeccCCccc-ccCCcccceEEecCCEEEEEecChhhHHHHHHHHHHHHHHhhhhcCCCCCHHHHH
Q 025716 31 NAAVGVRGTDTIVLGVEKKSTVKL-QDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYIT 109 (249)
Q Consensus 31 ~t~igi~~~dgVvla~d~~~~~~l-~~~~~~~Ki~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la 109 (249)
+|+|||+++||||||+|+|.++++ +.+++.+||++|++|++++++|..+|++.|.++++.+++.|+++++++++++.++
T Consensus 1 TT~vgi~~~dgVvlaaD~r~t~g~~~~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a 80 (222)
T 1ryp_I 1 TTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSREPRVVSAL 80 (222)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred CeEEEEEECCEEEEEEcCCcccCCeeecCCcccEEEecCCEEEEecccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 689999999999999999998854 5567899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhccCCCccceeEEEEEeeeCCCCCceEEEECCCCceeccceEeecCCchHHHHHHHhhhccCCc-HHHHH
Q 025716 110 RYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKETSG-QETIK 188 (249)
Q Consensus 110 ~~ls~~~~~~t~~~~~rP~gv~~ivaG~d~~~~gp~Ly~iDp~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s-eeai~ 188 (249)
+++++.++.| .|||++++||||||+ +||+||.+||+|++.+++++|+|+|+..++++||+.|+++|+ +||++
T Consensus 81 ~~l~~~l~~~-----~~p~~v~~lvaG~D~--~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeA~~ 153 (222)
T 1ryp_I 81 QMLKQHLFKY-----QGHIGAYLIVAGVDP--TGSHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHWKQDLTKEEAIK 153 (222)
T ss_dssp HHHHHHHHHT-----TTCSCEEEEEEEEET--TEEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHHCCSSCCHHHHHH
T ss_pred HHHHHHHhhc-----CCCCCeeEEEEEEeC--CCCEEEEECCCCCEEecCEEEECCCHHHHHHHHHhhCCCCcCHHHHHH
Confidence 9999998765 379999999999994 689999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHhc---CCCcEEEEEEEcCCCEEEcC
Q 025716 189 LAIRALLEVVES---GGKNIEVAVMTREKGLKQLD 220 (249)
Q Consensus 189 la~~~l~~~~~~---~~~~iei~~v~~~g~~~~~~ 220 (249)
++++||..++++ ++.+++|++|+++|+++.+.
T Consensus 154 la~~al~~~~~~d~~sg~~i~v~vi~~~g~~~~~~ 188 (222)
T 1ryp_I 154 LASDAIQAGIWNDLGSGSNVDVCVMEIGKDAEYLR 188 (222)
T ss_dssp HHHHHHHHHHHHCTTCCSCEEEEEEETTSCEEEEE
T ss_pred HHHHHHHHHHhccccCCCcEEEEEEECCCCEEEEe
Confidence 999999999875 47799999999987577654
No 44
>3unf_N Proteasome subunit beta type-9; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_N
Probab=100.00 E-value=4.8e-42 Score=285.62 Aligned_cols=190 Identities=18% Similarity=0.256 Sum_probs=175.1
Q ss_pred CcEEEEEeCCEEEEEEeccCCcc-cccCCcccceEEecCCEEEEEecChhhHHHHHHHHHHHHHHhhhhcCCCCCHHHHH
Q 025716 31 NAAVGVRGTDTIVLGVEKKSTVK-LQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYIT 109 (249)
Q Consensus 31 ~t~igi~~~dgVvla~d~~~~~~-l~~~~~~~Ki~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la 109 (249)
||+|||+++||||||+|+|.+++ ++.+++.+||++|++|++++++|+.+|++.|.++++.+++.|+++++++++++.++
T Consensus 1 TT~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a 80 (199)
T 3unf_N 1 TTIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAA 80 (199)
T ss_dssp CEEEEEECSSCEEEEECCCEEETTEEEESSCCCEEEEETTEEEEECSCHHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHH
T ss_pred CeEEEEEeCCeEEEEECCcccCCceeEccccCceEEcCCCEEEEecccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 68999999999999999999885 77788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhccCCCccceeEEEEEeeeCCCCCceEEEECCCCceecc-ceEeecCCchHHHHHHHhhhccCCc-HHHH
Q 025716 110 RYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAW-KANATGRNSNSMREFLEKNYKETSG-QETI 187 (249)
Q Consensus 110 ~~ls~~~~~~t~~~~~rP~gv~~ivaG~d~~~~gp~Ly~iDp~G~~~~~-~~~aiG~g~~~a~~~Le~~~~~~~s-eeai 187 (249)
+++++.++.+ .|||+|++||||||+ +++|+||. |+|++..+ +++++|+|+..++++||+.|+++|+ +||+
T Consensus 81 ~~l~~~l~~~-----~~p~~v~~lvaG~D~-~~~p~ly~--p~G~~~~~~~~~~~Gsgs~~a~~~Le~~~~~~ms~eea~ 152 (199)
T 3unf_N 81 NVVKNISYKY-----REDLLAHLIVAGWDQ-REGGQVYG--TMGGMLIRQPFTIGGSGSSYIYGYVDAAYKPGMTPEECR 152 (199)
T ss_dssp HHHHHHHHHT-----TTTCCCCEEEEEEET-TTEEEEEE--CGGGCCEECSEEEEEGGGGGGHHHHHHHCCSSCCHHHHH
T ss_pred HHHHHHHHhc-----CCCceEEEEEEEEeC-CCCcEEEE--ECCCceecCCEEEEccCHHHHHHHHHhhcCCCCCHHHHH
Confidence 9999999764 369999999999996 57899999 99998665 5666799999999999999999999 9999
Q ss_pred HHHHHHHHHHHhc---CCCcEEEEEEEcCC-CEEEcCHHHHHHHH
Q 025716 188 KLAIRALLEVVES---GGKNIEVAVMTREK-GLKQLDEAEIDAMV 228 (249)
Q Consensus 188 ~la~~~l~~~~~~---~~~~iei~~v~~~g-~~~~~~~~ei~~~l 228 (249)
+++++||..+.++ ++++++|++|+++| .++.++++||++++
T Consensus 153 ~la~~al~~~~~~d~~sg~~i~v~vi~~~g~~~~~l~~~ei~~~~ 197 (199)
T 3unf_N 153 RFTTNAITLAMNRDGSSGGVIYLVTITAAGVDHRVILGDELPKFY 197 (199)
T ss_dssp HHHHHHHHHHHHHCTTCCSCEEEEEECSSCEEEEEECGGGSCCCC
T ss_pred HHHHHHHHHHHHhccccCCCeEEEEEcCCCEEEEEcCcccCcccc
Confidence 9999999999876 46899999999997 57889999987654
No 45
>1iru_I 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_H* 3une_H
Probab=100.00 E-value=3.1e-40 Score=281.48 Aligned_cols=183 Identities=22% Similarity=0.307 Sum_probs=169.9
Q ss_pred CcEEEEEeCCEEEEEEeccCCccc-ccCCcccceEEecCCEEEEEecChhhHHHHHHHHHHHHHHhhhhcCCCCCHHHHH
Q 025716 31 NAAVGVRGTDTIVLGVEKKSTVKL-QDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYIT 109 (249)
Q Consensus 31 ~t~igi~~~dgVvla~d~~~~~~l-~~~~~~~Ki~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la 109 (249)
+|+|||+++||||||+|+|.++++ +.+++.+||++|++|++++++|+.+|++.|.++++.+++.|+++++++++++.++
T Consensus 1 TTivgi~~~dgVVlaaD~r~t~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (234)
T 1iru_I 1 TTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLSTGRLPRVVTAN 80 (234)
T ss_dssp CCEEEEEETTEEEEEECCCEESSSBEEESSCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHCSCCCHHHHH
T ss_pred CeEEEEEeCCEEEEEEcCCcccCceeccCcccceEEecCCEEEEecCcHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 689999999999999999998865 4456899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhccCCCccceeEEEEEeeeCCCCCceEEEECCCCceeccceEeecCCchHHHHHHHhhhccCCc-HHHHH
Q 025716 110 RYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKETSG-QETIK 188 (249)
Q Consensus 110 ~~ls~~~~~~t~~~~~rP~gv~~ivaG~d~~~~gp~Ly~iDp~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s-eeai~ 188 (249)
+++++.++.|. +||++++||||||+ +||+||.+||+|++.+++++++|+|++.++++||+.|+++|+ +||++
T Consensus 81 ~~l~~~l~~~~-----~~~~v~llvaG~D~--~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeA~~ 153 (234)
T 1iru_I 81 RMLKQMLFRYR-----GYIGAALVLGGVDV--TGPHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKN 153 (234)
T ss_dssp HHHHHHHHHTT-----TCSCEEEEEEEECS--SCEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHSCCTTCCHHHHHT
T ss_pred HHHHHHHHhcC-----CCCceeEEEEEEcC--CCCEEEEECCCCCEEecCEEEECCchHHHHHHHHHhccCCCCHHHHHH
Confidence 99999987653 59999999999994 789999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHhc---CCCcEEEEEEEcCCCEEEcCH
Q 025716 189 LAIRALLEVVES---GGKNIEVAVMTREKGLKQLDE 221 (249)
Q Consensus 189 la~~~l~~~~~~---~~~~iei~~v~~~g~~~~~~~ 221 (249)
++++||..+..+ ++++++|++|+++| ++.+.+
T Consensus 154 la~~al~~a~~~d~~sg~~i~v~vi~k~g-~~~~~~ 188 (234)
T 1iru_I 154 LVSEAIAAGIFNDLGSGSNIDLCVISKNK-LDFLRP 188 (234)
T ss_dssp HHHHHHHHHHHHCTTCCSCEEEEEEETTE-EECCSE
T ss_pred HHHHHHHHHHHhcccCCCCEEEEEEECCc-EEEEcc
Confidence 999999998875 37899999999997 776553
No 46
>2z3b_A ATP-dependent protease HSLV; N-terminal nucleophIle hydrolase; 2.50A {Bacillus subtilis} SCOP: d.153.1.4 PDB: 2z3a_A 1yyf_D* 3ty6_A
Probab=100.00 E-value=3.4e-34 Score=234.90 Aligned_cols=165 Identities=16% Similarity=0.133 Sum_probs=147.0
Q ss_pred ccCCcEEEEEeCCEEEEEEeccCCc-cc-ccCCcccceEEe-cCCEEEEEecChhhHHHHHHHHHHHHHHhhhhcCCCCC
Q 025716 28 RKGNAAVGVRGTDTIVLGVEKKSTV-KL-QDSRSVRKIVSL-DNHIALACAGLKADARVLINRARIECQSHRLTVEDPVT 104 (249)
Q Consensus 28 ~~G~t~igi~~~dgVvla~d~~~~~-~l-~~~~~~~Ki~~I-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~ 104 (249)
.+|+|+|||+++||||||+|+|.+. .+ +.+++.+||++| ++|++++++|..+|++.|.++++.+++.|+ +
T Consensus 3 ~~GtTivgi~~~dgVvlaaD~r~t~g~~~i~~~~~~KI~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~y~---g---- 75 (180)
T 2z3b_A 3 FHATTIFAVQHKGRSAMSGDGQVTFGQAVVMKHTARKVRKLFNGKVLAGFAGSVADAFTLFEKFEAKLEEYN---G---- 75 (180)
T ss_dssp BCCCCEEEEEETTEEEEEECCCEEETTTEEEESCCCCEEEETTTTEEEEECSCHHHHHHHHHHHHHHHHHTT---T----
T ss_pred CCCeEEEEEEECCEEEEEECCCccCCCceEecCCCCcEEEECCCCEEEEeCchHHHHHHHHHHHHHHHHHhc---C----
Confidence 5799999999999999999999988 56 888899999999 999999999999999999999999999988 3
Q ss_pred HHHHHHHHHHHHHhhhccCCCccceeEEEEEeeeCCCCCceEEEECCCCceec--cceEeecCCchHHHHHHHhhhcc--
Q 025716 105 VEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSA--WKANATGRNSNSMREFLEKNYKE-- 180 (249)
Q Consensus 105 ~~~la~~ls~~~~~~t~~~~~rP~gv~~ivaG~d~~~~gp~Ly~iDp~G~~~~--~~~~aiG~g~~~a~~~Le~~~~~-- 180 (249)
.+.+.++++.+.++++...|||++++||+ | +|+||.+||+|++.+ ++++|+|+|+.+++++||+.|++
T Consensus 76 --~~~~~~~~l~~~~~~~~~~rp~~~~~lva--d----~p~ly~~d~~G~~~~~~~~~~a~Gsgs~~a~~~le~~~~~~~ 147 (180)
T 2z3b_A 76 --NLKRAAVELAKEWRSDKVLRKLEAMLIVM--N----QDTLLLVSGTGEVIEPDDGILAIGSGGNYALAAGRALKKHAG 147 (180)
T ss_dssp --CHHHHHHHHHHHHHHCTTGGGCCCCEEEE--C----SSCEEEECTTCCEECCSSSEEEESTTHHHHHHHHHHHHHHHG
T ss_pred --ChHHHHHHHHHHHHhhhCcCcceEEEEEE--c----CCeEEEECCCCcEEEeCCCEEEECCCHHHHHHHHHHhhhccC
Confidence 34445556667777778889999999999 5 699999999999998 59999999999999999999998
Q ss_pred -CCc-HHHHHHHHHHHHHHHhc---CCCcEEEEEE
Q 025716 181 -TSG-QETIKLAIRALLEVVES---GGKNIEVAVM 210 (249)
Q Consensus 181 -~~s-eeai~la~~~l~~~~~~---~~~~iei~~v 210 (249)
+|+ +|+ +++||..+.++ ++++++|.+|
T Consensus 148 ~~mt~eel---~~~al~~a~~rd~~sg~~i~v~~i 179 (180)
T 2z3b_A 148 ESMSASEI---ARAALETAGEICVYTNDQIILEEL 179 (180)
T ss_dssp GGCCHHHH---HHHHHHHHHHHCTTCCSCCEEEEE
T ss_pred CCCCHHHH---HHHHHHHHHHhcCccCCeEEEEEE
Confidence 999 884 66888888775 5788999887
No 47
>1g3k_A ATP-dependent protease HSLV; hydrolase; 1.90A {Haemophilus influenzae} SCOP: d.153.1.4 PDB: 1g3i_G 1jjw_A 1kyi_G* 1ofh_G* 1ofi_G* 1e94_A* 1g4a_B* 1g4b_M 1hqy_A* 1ht1_C* 1ht2_A* 1ned_A
Probab=100.00 E-value=4.7e-33 Score=226.84 Aligned_cols=163 Identities=15% Similarity=0.158 Sum_probs=143.3
Q ss_pred CcEEEEEeCCEEEEEEeccCCcc-cccCCcccceEEe-cCCEEEEEecChhhHHHHHHHHHHHHHHhhhhcCCCCCHHHH
Q 025716 31 NAAVGVRGTDTIVLGVEKKSTVK-LQDSRSVRKIVSL-DNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYI 108 (249)
Q Consensus 31 ~t~igi~~~dgVvla~d~~~~~~-l~~~~~~~Ki~~I-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l 108 (249)
+|+|||+++||||||+|+|.+.+ ++.+++.+||++| ++|++++++|..+|++.|.++++.+++.|+. + +
T Consensus 1 tT~vgi~~~dgVvlaaD~r~t~g~~i~~~~~~Ki~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~------~---~ 71 (174)
T 1g3k_A 1 TTIVSVRRNGQVVVGGDGQVSLGNTVMKGNARKVRRLYNGKVLAGFAGGTADAFTLFELFERKLEMHQG------H---L 71 (174)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEETTTTEEEEEESCHHHHHHHHHHHHHHHHHTTT------C---H
T ss_pred CeEEEEEECCEEEEEECCCCccCCeeEeCCCCcEEEECCCCEEEEeCccHHHHHHHHHHHHHHHHHhcC------c---H
Confidence 68999999999999999999874 7778899999999 9999999999999999999999999999985 2 3
Q ss_pred HHHHHHHHHhhhccCCCccceeEEEEEeeeCCCCCceEEEECCCCceeccc---eEeecCCchHHHHHHHhhhc-cCCc-
Q 025716 109 TRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWK---ANATGRNSNSMREFLEKNYK-ETSG- 183 (249)
Q Consensus 109 a~~ls~~~~~~t~~~~~rP~gv~~ivaG~d~~~~gp~Ly~iDp~G~~~~~~---~~aiG~g~~~a~~~Le~~~~-~~~s- 183 (249)
.+.++.+.+.++++...||++ ++++|+| +|+||.+||+|++.+++ ++|+|+|+++++++||+.|+ ++|+
T Consensus 72 ~~~~~~l~~~~~~~~~~r~~~--~~l~g~d----~p~Ly~~d~~G~~~~~~~~~~~a~Gsgs~~a~~~le~~~~~~~mt~ 145 (174)
T 1g3k_A 72 LKSAVELAKDWRTDRALRKLE--AMLIVAD----EKESLIITGIGDVVQPEEDQILAIGSGGNYALSAARALVENTELSA 145 (174)
T ss_dssp HHHHHHHHHHHHHSTTGGGCC--CEEEEEC----SSCEEEEETTTEEECCCTTCEEEESTTHHHHHHHHHHHHHHCCCCH
T ss_pred HHHHHHHHHHHHhccCcCcce--EEEEEEC----CCEEEEEcCCCcEEecCCCcEEEEcccHHHHHHHHHHhcccCCCCH
Confidence 555566666677777778865 5788886 69999999999999988 99999999999999999999 9999
Q ss_pred HHHHHHHHHHHHHHHhc---CCCcEEEEEEE
Q 025716 184 QETIKLAIRALLEVVES---GGKNIEVAVMT 211 (249)
Q Consensus 184 eeai~la~~~l~~~~~~---~~~~iei~~v~ 211 (249)
+ +++++||..+.++ ++++++|.+|+
T Consensus 146 ~---~l~~~al~~a~~rd~~sg~~i~v~~i~ 173 (174)
T 1g3k_A 146 H---EIVEKSLRIAGDICVFTNTNFTIEELP 173 (174)
T ss_dssp H---HHHHHHHHHHHHHCTTCCSCCEEEEEC
T ss_pred H---HHHHHHHHHHHHhccccCCceEEEEec
Confidence 6 5788888888765 57899999985
No 48
>1m4y_A ATP-dependent protease HSLV; N-terminal catalytic threonine residue, hydrolase; 2.10A {Thermotoga maritima} SCOP: d.153.1.4
Probab=100.00 E-value=1.3e-32 Score=223.69 Aligned_cols=163 Identities=17% Similarity=0.183 Sum_probs=140.5
Q ss_pred CcEEEEEeCCEEEEEEeccCCc-ccccCCcccceEEe-cCCEEEEEecChhhHHHHHHHHHHHHHHhhhhcCCCCCHHHH
Q 025716 31 NAAVGVRGTDTIVLGVEKKSTV-KLQDSRSVRKIVSL-DNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYI 108 (249)
Q Consensus 31 ~t~igi~~~dgVvla~d~~~~~-~l~~~~~~~Ki~~I-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l 108 (249)
+|+|||+++||||||+|+|.+. .++.+++.+||++| ++|++++++|..+|++.|.++++.+++.|+.+ +
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~Ki~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~---------~ 71 (171)
T 1m4y_A 1 TTILVVRRNGQTVMGGDGQVTFGSTVLKGNARKVRKLGEGKVLAGFAGSVADAMTLFDRFEAKLREWGGN---------L 71 (171)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEETTTTEEEEEESCHHHHHHHHHHHHHHHHHTTTC---------H
T ss_pred CeEEEEEECCEEEEEECCCcccCCEEEeCCcceEEEeCCCCEEEEeCccHHHHHHHHHHHHHHHHHhccc---------H
Confidence 6899999999999999999987 67788899999999 99999999999999999999999999998854 2
Q ss_pred HHHHHHHHHhhhccCCCccceeEEEEEeeeCCCCCceEEEECCCCceeccc--eEeecCCchHHHHHHHhhhc-cCCcHH
Q 025716 109 TRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWK--ANATGRNSNSMREFLEKNYK-ETSGQE 185 (249)
Q Consensus 109 a~~ls~~~~~~t~~~~~rP~gv~~ivaG~d~~~~gp~Ly~iDp~G~~~~~~--~~aiG~g~~~a~~~Le~~~~-~~~see 185 (249)
.+.++++.+.++++...|||++++|++ | +|+||.+||+|++.+++ ++++|+|+++++++||+.|+ ++|+.
T Consensus 72 ~~~~~~l~~~~~~~~~~~~~~~~~lv~--D----~p~Ly~~d~~G~~~~~~~~~~a~Gsgs~~a~~~le~~~~~~~ms~- 144 (171)
T 1m4y_A 72 TKAAVELAKDWRTDRVLRRLEALLLVA--D----KENIFIISGNGEVIQPDDDAAAIGSGGPYALAAAKALLRNTDLSA- 144 (171)
T ss_dssp HHHHHHHHHHHHHCTTGGGCCCEEEEE--C----SSCEEEECTTSCEECCSSSEEEESTTHHHHHHHHHHHHHHCCCCH-
T ss_pred HHHHHHHHHHHHHhCCCCceEEEEEEE--c----CCEEEEECCCCCEEecCCCEEEECCcHHHHHHHHHHhcccCCCCH-
Confidence 334444444556666678999998888 5 79999999999999988 99999999999999999999 99982
Q ss_pred HHHHHHHHHHHHHhc---CCCcEEEEEE
Q 025716 186 TIKLAIRALLEVVES---GGKNIEVAVM 210 (249)
Q Consensus 186 ai~la~~~l~~~~~~---~~~~iei~~v 210 (249)
++++++||..+.++ ++++++|.++
T Consensus 145 -~~l~~~al~~a~~rd~~sg~~i~v~~~ 171 (171)
T 1m4y_A 145 -REIVEKAMTIAGEICIYTNQNIVIEEV 171 (171)
T ss_dssp -HHHHHHHHHHHHHHCTTCCSCCEEEEC
T ss_pred -HHHHHHHHHHHHHhCcccCCeEEEEEC
Confidence 44688888888765 4778888753
No 49
>3rj2_X ORF158L protein, putative uncharacterized protein; histone 3, protein binding; 2.20A {Singapore grouper iridovirus}
Probab=51.48 E-value=3.1 Score=30.61 Aligned_cols=17 Identities=18% Similarity=0.348 Sum_probs=14.1
Q ss_pred CCCCCCCcccCCCCcch
Q 025716 2 ARYDRAITVFSPDGHLF 18 (249)
Q Consensus 2 ~~yd~~~~~fsp~G~l~ 18 (249)
++-|+.+|.|+|+||+.
T Consensus 53 ~gm~h~vTfF~~~Grl~ 69 (138)
T 3rj2_X 53 MFMRHRVTFFNATGRYI 69 (138)
T ss_dssp TTCEEEEEEECTTSCEE
T ss_pred CcceeEEEEEcCCCcEE
Confidence 35688899999999875
No 50
>4gof_A Small glutamine-rich tetratricopeptide repeat-CON protein alpha; four-helix bundle, protein-protein interaction, UBL4A ubiqui domain; 1.35A {Homo sapiens} PDB: 4goe_A 4god_A
Probab=44.51 E-value=51 Score=20.42 Aligned_cols=32 Identities=22% Similarity=0.354 Sum_probs=23.3
Q ss_pred HHHHHHhhhc-cCCc---HHHHHHHHHHHHHHHhcC
Q 025716 170 MREFLEKNYK-ETSG---QETIKLAIRALLEVVESG 201 (249)
Q Consensus 170 a~~~Le~~~~-~~~s---eeai~la~~~l~~~~~~~ 201 (249)
+..+|..... ..++ .|.++.|++||.+++..+
T Consensus 9 Ii~FL~~~~~~~~~s~D~~ESleVAiqCi~~aF~v~ 44 (52)
T 4gof_A 9 IIQFLHDQLRHGGLSSDAQESLEVAIQCLETAFGVT 44 (52)
T ss_dssp HHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHhcccCCcCHhHHHHHHHHHHHHHHHcCCC
Confidence 4455655543 4566 688999999999999754
No 51
>3jx9_A Putative phosphoheptose isomerase; YP_001815198.1, structura genomics, joint center for structural genomics, JCSG; HET: MSE; 1.95A {Exiguobacterium sibiricum 255-15}
Probab=36.64 E-value=20 Score=27.94 Aligned_cols=31 Identities=10% Similarity=-0.026 Sum_probs=28.6
Q ss_pred CcccCCCCcch-hhhhHHHHHccCCcEEEEEe
Q 025716 8 ITVFSPDGHLF-QVEYALEAVRKGNAAVGVRG 38 (249)
Q Consensus 8 ~~~fsp~G~l~-Qveya~kav~~G~t~igi~~ 38 (249)
+-+||+.|+-- -+|-|.++-.+|-++|+|..
T Consensus 81 vii~S~Sg~n~~~ie~A~~ake~G~~vIaITs 112 (170)
T 3jx9_A 81 VLIFTPDTERSDLLASLARYDAWHTPYSIITL 112 (170)
T ss_dssp EEEEESCSCCHHHHHHHHHHHHHTCCEEEEES
T ss_pred EEEEeCCCCCHHHHHHHHHHHHCCCcEEEEeC
Confidence 56799999988 89999999999999999988
No 52
>2hc5_A ORF 99, hypothetical protein YVYC; NESG, GFT-PSI, protein structure initiative, northeast structural genomics consortium, alpha-beta, FLAG; NMR {Bacillus subtilis} SCOP: d.352.1.1
Probab=35.96 E-value=1.2e+02 Score=21.89 Aligned_cols=55 Identities=7% Similarity=0.059 Sum_probs=38.4
Q ss_pred CCcHHHHHHHHHHHHHHHhc-----------CCCcEEEEEEEcC-C-CEEEcCHHHHHHHHHHHHHHH
Q 025716 181 TSGQETIKLAIRALLEVVES-----------GGKNIEVAVMTRE-K-GLKQLDEAEIDAMVAEIEAKK 235 (249)
Q Consensus 181 ~~seeai~la~~~l~~~~~~-----------~~~~iei~~v~~~-g-~~~~~~~~ei~~~l~~i~~~~ 235 (249)
..+++-++-++.-|.+.+.. +.+.+-|.+++++ | .+|.++++++-++..+|.+..
T Consensus 34 ~~~~eel~~av~~lN~~~~~~n~~L~F~vdee~~~~vVkVvD~~TgEVIRqIPpEe~L~l~~~l~e~~ 101 (117)
T 2hc5_A 34 QVSYTNLAEMVGEMNKLLEPSQVHLKFELHDKLNEYYVKVIEDSTNEVIREIPPKRWLDFYAAMTEFL 101 (117)
T ss_dssp CCCHHHHHHHHHHHHHHHTTSSCCEEEEEEEETTEEEEEEEETTTTEEEEEECHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCceEEEEecCCCcEEEEEEECCCCcEEEeCChHHHHHHHHHHHHhh
Confidence 34434455666667666542 2457889999984 5 458999999999999888643
No 53
>1hbx_G ETS-domain protein ELK-4; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: a.4.5.21
Probab=31.98 E-value=33 Score=26.33 Aligned_cols=25 Identities=12% Similarity=0.171 Sum_probs=22.1
Q ss_pred EEEEEcCCCEEEcCHHHHHHHHHHH
Q 025716 207 VAVMTREKGLKQLDEAEIDAMVAEI 231 (249)
Q Consensus 207 i~~v~~~g~~~~~~~~ei~~~l~~i 231 (249)
|.|++++|.|+.+++++|++++..-
T Consensus 25 I~Wt~~~geFklvdpe~VArLWG~r 49 (157)
T 1hbx_G 25 ICWTSNDGQFKLLQAEEVARLWGIR 49 (157)
T ss_dssp EEECSSSSCEEETTHHHHHHHHHHG
T ss_pred eEEeCCCCEEEecCcHHHHHHHHhc
Confidence 7888999999999999999988753
No 54
>2lxb_A Small glutamine-rich tetratricopeptide repeat-CON protein 2; four-helix bundle, protein-protein interaction, GET5 binding GET pathway; NMR {Saccharomyces cerevisiae} PDB: 2lxc_B
Probab=31.68 E-value=89 Score=20.80 Aligned_cols=33 Identities=6% Similarity=0.187 Sum_probs=23.4
Q ss_pred HHHHHHHhhhc-cCCc---HHHHHHHHHHHHHHHhcC
Q 025716 169 SMREFLEKNYK-ETSG---QETIKLAIRALLEVVESG 201 (249)
Q Consensus 169 ~a~~~Le~~~~-~~~s---eeai~la~~~l~~~~~~~ 201 (249)
.+..+|..... ..++ .|-++.|++||.+++..+
T Consensus 13 sIi~FL~~~~~~~~ls~D~~ESLeVAiqCI~~aF~v~ 49 (74)
T 2lxb_A 13 LIVNYFSSIVEKKEISEDGADSLNVAMDCISEAFGFE 49 (74)
T ss_dssp HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHhcccCCcCHHHHHHHHHHHHHHHHHhCCC
Confidence 34455655543 4566 688999999999999754
No 55
>3vxv_A Methyl-CPG-binding domain protein 4; methyl CPG binding domain, protein-DNA complex, versatIle BA recognition, hydrolase-DNA complex; HET: DNA 5CM; 2.00A {Mus musculus} PDB: 3vxx_A* 3vyb_A* 3vyq_A*
Probab=31.53 E-value=69 Score=20.91 Aligned_cols=29 Identities=10% Similarity=0.158 Sum_probs=25.5
Q ss_pred CCcEEEEEEEcCCCEEEcCHHHHHHHHHHH
Q 025716 202 GKNIEVAVMTREKGLKQLDEAEIDAMVAEI 231 (249)
Q Consensus 202 ~~~iei~~v~~~g~~~~~~~~ei~~~l~~i 231 (249)
....+|.++++.| -+.-+..||..||..-
T Consensus 23 ~gk~DvyY~sP~G-kk~RSk~ev~~yL~~~ 51 (69)
T 3vxv_A 23 AGKFDVYFISPQG-LKFRSKRSLANYLLKN 51 (69)
T ss_dssp TTCEEEEEECTTS-CEECSHHHHHHHHHHH
T ss_pred CCcceEEEEcCCC-CEeeCHHHHHHHHHhC
Confidence 3578999999998 8999999999999874
No 56
>3c2i_A Methyl-CPG-binding protein 2; water mediated recognition; HET: DNA 5CM; 2.50A {Homo sapiens} PDB: 1qk9_A
Probab=31.33 E-value=64 Score=22.70 Aligned_cols=29 Identities=7% Similarity=0.100 Sum_probs=25.5
Q ss_pred CCcEEEEEEEcCCCEEEcCHHHHHHHHHHH
Q 025716 202 GKNIEVAVMTREKGLKQLDEAEIDAMVAEI 231 (249)
Q Consensus 202 ~~~iei~~v~~~g~~~~~~~~ei~~~l~~i 231 (249)
...++|++++++| -++-+..||..||.+-
T Consensus 41 ~gk~DvYY~sP~G-kkfRSk~ev~ryL~~~ 69 (97)
T 3c2i_A 41 AGKYDVYLINPQG-KAFRSKVELIMYFEKV 69 (97)
T ss_dssp TTCEEEEEECTTS-CEECSHHHHHHHHHHH
T ss_pred CCcceEEEECCCC-CEEECHHHHHHHHHHC
Confidence 3579999999998 8999999999999754
No 57
>4asv_A Small glutamine-rich tetratricopeptide repeat-CON protein 2; chaperone, membrane, tail-anchored, post-translational targe; NMR {Saccharomyces cerevisiae} PDB: 4asw_A
Probab=30.92 E-value=78 Score=22.02 Aligned_cols=33 Identities=6% Similarity=0.187 Sum_probs=23.3
Q ss_pred HHHHHHHhhhc-cCCc---HHHHHHHHHHHHHHHhcC
Q 025716 169 SMREFLEKNYK-ETSG---QETIKLAIRALLEVVESG 201 (249)
Q Consensus 169 ~a~~~Le~~~~-~~~s---eeai~la~~~l~~~~~~~ 201 (249)
.+..+|..... ..++ .|.++.|++||.+++..+
T Consensus 25 sIIdFL~~sv~~~~ls~D~~ESLEVAIqCI~~AF~Vd 61 (92)
T 4asv_A 25 LIVNYFSSIVEKKEISEDGADSLNVAMDCISEAFGFE 61 (92)
T ss_dssp HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHhcccCCcCHHHHHHHHHHHHHHHHHhCCC
Confidence 34455555443 4566 688999999999999754
No 58
>2yxo_A Histidinol phosphatase; metal-dependent, hydrolase; 1.60A {Thermus thermophilus} PDB: 2yz5_A 2z4g_A
Probab=30.67 E-value=35 Score=27.64 Aligned_cols=32 Identities=22% Similarity=0.109 Sum_probs=28.3
Q ss_pred cccCCCCcchhhhhHHHHHccCCcEEEEEeCC
Q 025716 9 TVFSPDGHLFQVEYALEAVRKGNAAVGVRGTD 40 (249)
Q Consensus 9 ~~fsp~G~l~Qveya~kav~~G~t~igi~~~d 40 (249)
|+||+||..---|++..|...|-..|||+-.+
T Consensus 8 t~~S~DG~~~~ee~v~~A~~~Gl~~iaiTDH~ 39 (267)
T 2yxo_A 8 TPLCGHAEGHPEAYLEEARAKGLKGVVFTDHS 39 (267)
T ss_dssp CGGGSSCCSCHHHHHHHHHHTTCSEEEEEEEC
T ss_pred cCCCCCCCCCHHHHHHHHHHcCCCEEEEcCCC
Confidence 57999999888899999999999999987665
No 59
>1bc8_C SAP-1, protein (SAP-1 ETS domain); DNA-binding domain, winged helix-turn-helix, DNA-binding specificity, transcription/DNA complex; HET: DNA; 1.93A {Homo sapiens} SCOP: a.4.5.21 PDB: 1bc7_C* 1k6o_A 1dux_C*
Probab=30.64 E-value=19 Score=25.23 Aligned_cols=26 Identities=12% Similarity=0.180 Sum_probs=22.2
Q ss_pred EEEEEcCCCEEEcCHHHHHHHHHHHH
Q 025716 207 VAVMTREKGLKQLDEAEIDAMVAEIE 232 (249)
Q Consensus 207 i~~v~~~g~~~~~~~~ei~~~l~~i~ 232 (249)
|.|++++|.|+.+++++|++....-.
T Consensus 24 I~W~~~~g~Fkl~d~~~VArlWG~rK 49 (93)
T 1bc8_C 24 ICWTSNDGQFKLLQAEEVARLWGIRK 49 (93)
T ss_dssp SEECSSSSEEECTTHHHHHHHHHHHH
T ss_pred eEEeCCCCEEEecCHHHHHHHHHhcC
Confidence 67888889999999999999887543
No 60
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=30.50 E-value=74 Score=21.91 Aligned_cols=50 Identities=6% Similarity=-0.008 Sum_probs=34.7
Q ss_pred cCCc-HHHHHHHHHHHHHHHhc-CCCcEEEEEEEcCCC-EEEcCHHHHHHHHHHHHH
Q 025716 180 ETSG-QETIKLAIRALLEVVES-GGKNIEVAVMTREKG-LKQLDEAEIDAMVAEIEA 233 (249)
Q Consensus 180 ~~~s-eeai~la~~~l~~~~~~-~~~~iei~~v~~~g~-~~~~~~~ei~~~l~~i~~ 233 (249)
++++ ++..+.+.. .+.. ....|.+.|++.+|. +...+.+|+++.+.-++.
T Consensus 24 ~~i~~~~L~~kv~~----~~~~~~~~~f~lky~DEeGD~itisSd~EL~eAl~l~~~ 76 (89)
T 1vd2_A 24 PSISFEGLCNEVRD----MCSFDNEQLFTMKWIDEEGDPCTVSSQLELEEAFRLYEL 76 (89)
T ss_dssp TTCCHHHHHHHHHH----HTTCCSSCCEEEEECCSSSCCEECCSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH----HhCCCCCCeEEEEEECCCCCcccccCHHHHHHHHHHHHc
Confidence 4566 776655444 3333 356799999999774 567789999999886653
No 61
>1yo5_C SAM pointed domain containing ETS transcription factor; protein-DNA complex, double helix, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.4.5.21
Probab=29.96 E-value=59 Score=22.89 Aligned_cols=26 Identities=12% Similarity=0.130 Sum_probs=21.9
Q ss_pred EEEEEc-CCCEEEcCHHHHHHHHHHHH
Q 025716 207 VAVMTR-EKGLKQLDEAEIDAMVAEIE 232 (249)
Q Consensus 207 i~~v~~-~g~~~~~~~~ei~~~l~~i~ 232 (249)
|.|+++ +|.|+.+++++|++....-.
T Consensus 31 I~W~~~~~g~Fkl~d~~~VArlWG~rK 57 (97)
T 1yo5_C 31 IRWLNKEKGIFKIEDSAQVARLWGIRK 57 (97)
T ss_dssp EEEEETTTTEEEESCHHHHHHHHHHHH
T ss_pred eEeecCCCCEEEecCHHHHHHHHHhcC
Confidence 788886 68999999999999987544
No 62
>1fli_A FLI-1; transcription/DNA; NMR {Homo sapiens} SCOP: a.4.5.21
Probab=28.71 E-value=23 Score=25.03 Aligned_cols=26 Identities=15% Similarity=0.105 Sum_probs=22.0
Q ss_pred EEEEEcCCCEEEcCHHHHHHHHHHHH
Q 025716 207 VAVMTREKGLKQLDEAEIDAMVAEIE 232 (249)
Q Consensus 207 i~~v~~~g~~~~~~~~ei~~~l~~i~ 232 (249)
|.|.+++|.|+.+++++|++....-.
T Consensus 25 I~W~~~~g~Fklvd~e~VArlWG~rK 50 (98)
T 1fli_A 25 ITWEGTNGEFKMTDPDEVARRWGERK 50 (98)
T ss_dssp EECTTSSSSCEECCHHHHHHHHHHHT
T ss_pred eEEeCCCCEEEEcCHHHHHHHHHhcc
Confidence 77778889999999999999887543
No 63
>4eo3_A Bacterioferritin comigratory protein/NADH dehydro; thioredoxin-fold, alpha-beta-aplha sandwich fold, antioxidan oxidoreductase, FMN binding; HET: FMN; 1.65A {Thermotoga maritima}
Probab=27.02 E-value=28 Score=29.74 Aligned_cols=45 Identities=20% Similarity=0.325 Sum_probs=31.8
Q ss_pred CceEEEECCCCceec-cceEeecCCchHHHHHHHhhhccCCc-HHHH
Q 025716 143 VPSLYQTDPSGTFSA-WKANATGRNSNSMREFLEKNYKETSG-QETI 187 (249)
Q Consensus 143 gp~Ly~iDp~G~~~~-~~~~aiG~g~~~a~~~Le~~~~~~~s-eeai 187 (249)
-|..|.||+.|.+.. ++.+-.+.....+...|++...++|+ .+++
T Consensus 102 ~r~tfiId~~G~i~~~~~~v~~~~h~~~~l~~~~~~~~~~~~~~~~I 148 (322)
T 4eo3_A 102 VRSTFLIDRWGFVRKEWRRVKVEGHVQEVKEALDRLIEEDLSLNKHI 148 (322)
T ss_dssp CCEEEEECTTSBEEEEEESCCSTTHHHHHHHHHHHHHHHHTSCCHHH
T ss_pred ccEEEEECCCCEEEEEEeCCCccccHHHHHHHHhhhchhhhHHHHHH
Confidence 378899999999975 44455666777888888776555555 4444
No 64
>1awc_A Protein (GA binding protein alpha); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: a.4.5.21
Probab=25.68 E-value=26 Score=25.29 Aligned_cols=26 Identities=8% Similarity=0.019 Sum_probs=22.5
Q ss_pred EEEEEcCCCEEEcCHHHHHHHHHHHH
Q 025716 207 VAVMTREKGLKQLDEAEIDAMVAEIE 232 (249)
Q Consensus 207 i~~v~~~g~~~~~~~~ei~~~l~~i~ 232 (249)
|.|++++|.|+.+++++|++....-.
T Consensus 20 I~W~~~~geFkl~d~e~VArlWG~rK 45 (110)
T 1awc_A 20 ISWVGDEGEFKLNQPELVAQKWGQRK 45 (110)
T ss_dssp SEECSSSSEEECSSHHHHHHHHHHHH
T ss_pred eEEeCCCCEEEecCHHHHHHHHHHcc
Confidence 78889999999999999999887543
No 65
>4avp_A ETS translocation variant 1; transcription, transcriptional activation and repression, DN binding protein, E twenty-SIX, erwing sarcoma; 1.82A {Homo sapiens} PDB: 4b06_A
Probab=23.26 E-value=55 Score=23.43 Aligned_cols=26 Identities=15% Similarity=0.132 Sum_probs=21.8
Q ss_pred EEEEEcCCCEEEcCHHHHHHHHHHHH
Q 025716 207 VAVMTREKGLKQLDEAEIDAMVAEIE 232 (249)
Q Consensus 207 i~~v~~~g~~~~~~~~ei~~~l~~i~ 232 (249)
|.|+++++.|+.+++++|++....-.
T Consensus 31 I~W~~~~~~Fkl~dp~~VA~lWG~rK 56 (106)
T 4avp_A 31 IAWTGRGMEFKLIEPEEVARRWGIQK 56 (106)
T ss_dssp EEECSSTTEEEESSHHHHHHHHHHHT
T ss_pred CcccCCCceEEecCHHHHHHHHHhcc
Confidence 67888888899999999999877543
No 66
>1wwx_A E74-like factor 5 ESE-2B; DNA binding, transcriptional activation and repression, structural genomics; NMR {Homo sapiens} SCOP: a.4.5.21
Probab=22.52 E-value=61 Score=23.23 Aligned_cols=26 Identities=8% Similarity=0.111 Sum_probs=21.9
Q ss_pred EEEEEc-CCCEEEcCHHHHHHHHHHHH
Q 025716 207 VAVMTR-EKGLKQLDEAEIDAMVAEIE 232 (249)
Q Consensus 207 i~~v~~-~g~~~~~~~~ei~~~l~~i~ 232 (249)
|.|+++ +|.|+.+++++|++....-.
T Consensus 29 I~W~~~~~g~Fkl~d~e~VArlWG~rK 55 (107)
T 1wwx_A 29 LEWEDREQGIFRVVKSEALAKMWGQRK 55 (107)
T ss_dssp CEEEETTTTEEECSCHHHHHHHHHHHH
T ss_pred EEeecCCCCEEEecCHHHHHHHHHhcC
Confidence 789997 68999999999999887543
No 67
>3jtg_A ETS-related transcription factor ELF-3; ELF3, protein-DNA complex, type II TGF-beta receptor, activa alternative splicing, cytoplasm; HET: DNA; 2.20A {Mus musculus} SCOP: a.4.5.21
Probab=21.15 E-value=1.1e+02 Score=21.77 Aligned_cols=26 Identities=15% Similarity=0.151 Sum_probs=21.9
Q ss_pred EEEEEc-CCCEEEcCHHHHHHHHHHHH
Q 025716 207 VAVMTR-EKGLKQLDEAEIDAMVAEIE 232 (249)
Q Consensus 207 i~~v~~-~g~~~~~~~~ei~~~l~~i~ 232 (249)
|.|+++ +|.|+.+++++|+++...-.
T Consensus 25 I~W~~~~~g~Fkl~dp~~VArlWG~rK 51 (103)
T 3jtg_A 25 MKWENRHEGVFKFLRSEAVAQLWGQKK 51 (103)
T ss_dssp EEEEETTTTEEEESSHHHHHHHHHHHT
T ss_pred cccccCCCceEEecCHHHHHHHHHhcc
Confidence 889997 57899999999999877643
Done!