BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>025718
MLLQINPCSSFPLKYHPLQHAVALAAQDGYSSESELASTSFMQVLNKKCDAFYRLTRPYS
CVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNK
PYLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLL
RWKGNPLMAAVTIISMNGLLLLFPFFIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAF
VKVTNSEIE

High Scoring Gene Products

Symbol, full name Information P value
HPT1
homogentisate phytyltransferase 1
protein from Arabidopsis thaliana 1.0e-29
N8DT-1
Naringenin 8-dimethylallyltransferase 1, chloroplastic
protein from Sophora flavescens 3.5e-22
SfN8DT-2
Naringenin 8-dimethylallyltransferase
protein from Sophora flavescens 4.4e-22
HST
homogentisate prenyltransferase
protein from Arabidopsis thaliana 4.5e-12

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  025718
        (249 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2044440 - symbol:HPT1 "homogentisate phytyltra...   329  1.0e-29   1
UNIPROTKB|B1B3P3 - symbol:N8DT-1 "Naringenin 8-dimethylal...   260  3.5e-22   1
UNIPROTKB|B1B5P4 - symbol:SfN8DT-2 "Naringenin 8-dimethyl...   259  4.4e-22   1
TAIR|locus:4010713740 - symbol:HST "homogentisate prenylt...   169  4.5e-12   1


>TAIR|locus:2044440 [details] [associations]
            symbol:HPT1 "homogentisate phytyltransferase 1"
            species:3702 "Arabidopsis thaliana" [GO:0004659 "prenyltransferase
            activity" evidence=IEA;IDA] [GO:0005886 "plasma membrane"
            evidence=ISM] [GO:0010189 "vitamin E biosynthetic process"
            evidence=IMP;TAS] [GO:0016021 "integral to membrane" evidence=IEA]
            [GO:0009507 "chloroplast" evidence=ISS] [GO:0010176 "homogentisate
            phytyltransferase activity" evidence=IMP;IDA] [GO:0042362
            "fat-soluble vitamin biosynthetic process" evidence=TAS]
            [GO:0009266 "response to temperature stimulus" evidence=IMP]
            [GO:0009915 "phloem sucrose loading" evidence=IMP] [GO:0031347
            "regulation of defense response" evidence=IMP] [GO:0006636
            "unsaturated fatty acid biosynthetic process" evidence=RCA;IMP]
            [GO:0071555 "cell wall organization" evidence=IMP] [GO:0000096
            "sulfur amino acid metabolic process" evidence=RCA] [GO:0006546
            "glycine catabolic process" evidence=RCA] [GO:0006733
            "oxidoreduction coenzyme metabolic process" evidence=RCA]
            [GO:0006766 "vitamin metabolic process" evidence=RCA] [GO:0008652
            "cellular amino acid biosynthetic process" evidence=RCA]
            [GO:0009072 "aromatic amino acid family metabolic process"
            evidence=RCA] [GO:0009106 "lipoate metabolic process" evidence=RCA]
            [GO:0009108 "coenzyme biosynthetic process" evidence=RCA]
            [GO:0009117 "nucleotide metabolic process" evidence=RCA]
            [GO:0009416 "response to light stimulus" evidence=RCA] [GO:0009695
            "jasmonic acid biosynthetic process" evidence=RCA] [GO:0009965
            "leaf morphogenesis" evidence=RCA] [GO:0015994 "chlorophyll
            metabolic process" evidence=RCA] [GO:0019216 "regulation of lipid
            metabolic process" evidence=RCA] [GO:0019288 "isopentenyl
            diphosphate biosynthetic process, mevalonate-independent pathway"
            evidence=RCA] [GO:0019748 "secondary metabolic process"
            evidence=RCA] [GO:0030154 "cell differentiation" evidence=RCA]
            [GO:0031408 "oxylipin biosynthetic process" evidence=RCA]
            [GO:0044272 "sulfur compound biosynthetic process" evidence=RCA]
            [GO:0045893 "positive regulation of transcription, DNA-dependent"
            evidence=RCA] InterPro:IPR000537 Pfam:PF01040 UniPathway:UPA00160
            GO:GO:0016021 GO:GO:0009507 EMBL:CP002685 GenomeReviews:CT485783_GR
            GO:GO:0006636 EMBL:AC003673 GO:GO:0071555 GO:GO:0009535
            GO:GO:0009266 GO:GO:0009915 GO:GO:0031347 eggNOG:COG0382
            GO:GO:0010189 EMBL:AF324344 EMBL:AY089963 EMBL:GU198365
            EMBL:AY063893 EMBL:AY113993 IPI:IPI00546170 PIR:T01623
            RefSeq:NP_849984.1 UniGene:At.27152 STRING:Q8VWJ1 PRIDE:Q8VWJ1
            GeneID:816412 KEGG:ath:AT2G18950 TAIR:At2g18950
            HOGENOM:HOG000264578 InParanoid:Q8VWJ1 KO:K09833 OMA:YQFIWKL
            PhylomeDB:Q8VWJ1 ProtClustDB:PLN02878 Genevestigator:Q8VWJ1
            GO:GO:0010176 Uniprot:Q8VWJ1
        Length = 393

 Score = 329 (120.9 bits), Expect = 1.0e-29, P = 1.0e-29
 Identities = 70/205 (34%), Positives = 110/205 (53%)

Query:    38 STSFMQVLNKKCDAFYRLTRPYSCXXXXXXXXXXXXXXXXXXADFTPKLIIEAFKCMVPX 97
             S S  +      DAFYR +RP++                   +D +P L     + +V  
Sbjct:    86 SNSKQKSFRDSLDAFYRFSRPHTVIGTVLSILSVSFLAVEKVSDISPLLFTGILEAVVAA 145

Query:    98 XXXXXXXXXXXQLADVHIDKVNKPYLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPP 157
                        QL+DV IDKVNKPYLPLA G++S+  G+AI  +  +M+  +G ++ S P
Sbjct:   146 LMMNIYIVGLNQLSDVEIDKVNKPYLPLASGEYSVNTGIAIVASFSIMSFWLGWIVGSWP 205

Query:   158 LVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPFFIHFQKIVLGNP 217
             L     +  ++G AYSI+LP LLRWK   L+AA+ I+++  +++   F++H Q  V G P
Sbjct:   206 LFWALFVSFMLGTAYSINLP-LLRWKRFALVAAMCILAVRAIIVQIAFYLHIQTHVFGRP 264

Query:   218 VAFTKPVLFTAAYMVIWNAAIAFVK 242
             + FT+P++F  A+M  ++  IA  K
Sbjct:   265 ILFTRPLIFATAFMSFFSVVIALFK 289


>UNIPROTKB|B1B3P3 [details] [associations]
            symbol:N8DT-1 "Naringenin 8-dimethylallyltransferase 1,
            chloroplastic" species:49840 "Sophora flavescens" [GO:0004659
            "prenyltransferase activity" evidence=IDA] [GO:0009507
            "chloroplast" evidence=IDA] InterPro:IPR000537 Pfam:PF01040
            GO:GO:0016021 GO:GO:0009507 GO:GO:0031969 GO:GO:0004659
            EMBL:AB325579 BioCyc:MetaCyc:MONOMER-16837 Uniprot:B1B3P3
        Length = 410

 Score = 260 (96.6 bits), Expect = 3.5e-22, P = 3.5e-22
 Identities = 64/225 (28%), Positives = 100/225 (44%)

Query:    19 QHAVALAAQDGYSSESELAST-SFMQVLNKKCDAFYRLTRPYSCXXXXXXXXXXXXXXXX 77
             ++ V   ++  +  E +     S    +N   D FY+  RPY+                 
Sbjct:    83 KYVVNAISEQSFEYEPQTRDPESIWDSVNDALDIFYKFCRPYAMFTIVLGATFKSLVAVE 142

Query:    78 XXADFTPKLIIEAFKCMVPXXXXXXXXXXXXQLADVHIDKVNKPYLPLACGDFSMGEGLA 137
               +D +    I   + +V             QL D+ IDK+NKP LPLA G  S    + 
Sbjct:   143 KLSDLSLAFFIGWLQVVVAVICIHIFGVGLNQLCDIEIDKINKPDLPLASGKLSFRNVVI 202

Query:   138 ITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMN 197
             IT +S ++ +    ++ S PL     I C+V  AY++DLP LLRWK  P++ A+  I+  
Sbjct:   203 ITASSLILGLGFAWIVDSWPLFWTVFISCMVASAYNVDLP-LLRWKKYPVLTAINFIADV 261

Query:   198 GLLLLFPFFIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVK 242
              +     FF+H Q  V   P  F +P++F  A + I+   IA  K
Sbjct:   262 AVTRSLGFFLHMQTCVFKRPTTFPRPLIFCTAIVSIYAIVIALFK 306


>UNIPROTKB|B1B5P4 [details] [associations]
            symbol:SfN8DT-2 "Naringenin 8-dimethylallyltransferase"
            species:49840 "Sophora flavescens" [GO:0004659 "prenyltransferase
            activity" evidence=IDA] [GO:0009507 "chloroplast" evidence=IDA]
            InterPro:IPR000537 Pfam:PF01040 GO:GO:0016021 GO:GO:0009507
            GO:GO:0004659 EMBL:AB370330 BioCyc:MetaCyc:MONOMER-16838
            Uniprot:B1B5P4
        Length = 407

 Score = 259 (96.2 bits), Expect = 4.4e-22, P = 4.4e-22
 Identities = 60/198 (30%), Positives = 92/198 (46%)

Query:    45 LNKKCDAFYRLTRPYSCXXXXXXXXXXXXXXXXXXADFTPKLIIEAFKCMVPXXXXXXXX 104
             +N   D FY+  RPY+                   +D +    I   + +V         
Sbjct:   107 VNDALDTFYKFCRPYAIFSVVLGATFKSLVAVERLSDLSLAFFIGWLQVVVAVICIHIFD 166

Query:   105 XXXXQLADVHIDKVNKPYLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFII 164
                 QL D+ IDK+NKP LPLA G+ S    + IT +S ++ +    ++ S PL     I
Sbjct:   167 VGLNQLCDIEIDKINKPDLPLASGNLSFRNVVIITASSLILGLGFAWIVGSWPLFWTVFI 226

Query:   165 WCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPFFIHFQKIVLGNPVAFTKPV 224
              C+   AY++DLP LLRWK  P++ A++ I+   +     FF+H Q  V   P  F +P+
Sbjct:   227 CCMFAAAYNVDLP-LLRWKKYPVLTAISFIANVAVTRSLGFFLHMQTCVFKRPTTFPRPL 285

Query:   225 LFTAAYMVIWNAAIAFVK 242
             +F  A + I+   IA  K
Sbjct:   286 IFCTAIVSIYAIVIALFK 303


>TAIR|locus:4010713740 [details] [associations]
            symbol:HST "homogentisate prenyltransferase"
            species:3702 "Arabidopsis thaliana" [GO:0004161
            "dimethylallyltranstransferase activity" evidence=NAS] [GO:0004659
            "prenyltransferase activity" evidence=IEA] [GO:0005739
            "mitochondrion" evidence=ISM] [GO:0016021 "integral to membrane"
            evidence=IEA] [GO:0010236 "plastoquinone biosynthetic process"
            evidence=IMP] [GO:0010355 "homogentisate farnesyltransferase
            activity" evidence=IDA] [GO:0010356 "homogentisate
            geranylgeranyltransferase activity" evidence=IDA] [GO:0010357
            "homogentisate solanesyltransferase activity" evidence=IDA]
            [GO:0009941 "chloroplast envelope" evidence=IDA] [GO:0009536
            "plastid" evidence=IDA] [GO:0016117 "carotenoid biosynthetic
            process" evidence=IMP] InterPro:IPR000537 Pfam:PF01040
            GO:GO:0016021 EMBL:CP002686 GO:GO:0009941 GO:GO:0016117
            GO:GO:0010236 IPI:IPI00938788 RefSeq:NP_001154609.1
            UniGene:At.71046 PRIDE:F4J8K0 EnsemblPlants:AT3G11945.2
            GeneID:5007993 KEGG:ath:AT3G11945 KO:K12501 OMA:TIYSVPP
            GO:GO:0010355 GO:GO:0010356 GO:GO:0010357 Uniprot:F4J8K0
        Length = 393

 Score = 169 (64.5 bits), Expect = 4.5e-12, P = 4.5e-12
 Identities = 43/135 (31%), Positives = 70/135 (51%)

Query:   109 QLADVHIDKVNKPYLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIG-FIIWCI 167
             Q+ D+ IDKVNKPYLP+A GD S+     + I   +  + + +     P +   + +   
Sbjct:   159 QIYDIGIDKVNKPYLPIAAGDLSVQSAWLLVIFFAIAGLLV-VGFNFGPFITSLYSLGLF 217

Query:   168 VGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPFFIHFQKIVLGNPVAFTKPVLFT 227
             +G  YS+  PPL R K  P+ A + I ++ G LL F  + H  +  LG P  ++ PV F 
Sbjct:   218 LGTIYSV--PPL-RMKRFPVAAFLIIATVRGFLLNFGVY-HATRAALGLPFQWSAPVAFI 273

Query:   228 AAYMVIWNAAIAFVK 242
              +++ ++   IA  K
Sbjct:   274 TSFVTLFALVIAITK 288


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.327   0.140   0.439    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      249       219   0.00092  112 3  11 22  0.43    32
                                                     32  0.39    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  599 (64 KB)
  Total size of DFA:  173 KB (2101 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  16.57u 0.10s 16.67t   Elapsed:  00:00:01
  Total cpu time:  16.57u 0.10s 16.67t   Elapsed:  00:00:01
  Start:  Fri May 10 23:47:56 2013   End:  Fri May 10 23:47:57 2013

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