BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025718
(249 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8VWJ1|HPT1_ARATH Homogentisate phytyltransferase 1, chloroplastic OS=Arabidopsis
thaliana GN=VTE2-1 PE=2 SV=1
Length = 393
Score = 161 bits (408), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 81/205 (39%), Positives = 129/205 (62%), Gaps = 1/205 (0%)
Query: 38 STSFMQVLNKKCDAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPA 97
S S + DAFYR +RP++ + + ++LSVS L ++ +D +P L + +V A
Sbjct: 86 SNSKQKSFRDSLDAFYRFSRPHTVIGTVLSILSVSFLAVEKVSDISPLLFTGILEAVVAA 145
Query: 98 IMMNNYANAINQLADVHIDKVNKPYLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPP 157
+MMN Y +NQL+DV IDKVNKPYLPLA G++S+ G+AI + +M+ +G ++ S P
Sbjct: 146 LMMNIYIVGLNQLSDVEIDKVNKPYLPLASGEYSVNTGIAIVASFSIMSFWLGWIVGSWP 205
Query: 158 LVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPFFIHFQKIVLGNP 217
L + ++G AYSI+L PLLRWK L+AA+ I+++ +++ F++H Q V G P
Sbjct: 206 LFWALFVSFMLGTAYSINL-PLLRWKRFALVAAMCILAVRAIIVQIAFYLHIQTHVFGRP 264
Query: 218 VAFTKPVLFTAAYMVIWNAAIAFVK 242
+ FT+P++F A+M ++ IA K
Sbjct: 265 ILFTRPLIFATAFMSFFSVVIALFK 289
>sp|B7FA90|HPT1_ORYSJ Probable homogentisate phytyltransferase 1, chloroplastic OS=Oryza
sativa subsp. japonica GN=HPT1 PE=2 SV=1
Length = 404
Score = 154 bits (389), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 81/228 (35%), Positives = 133/228 (58%), Gaps = 1/228 (0%)
Query: 15 YHPLQHAVALAAQDGYSSESELASTSFMQVLNKKCDAFYRLTRPYSCVSIIAALLSVSLL 74
+ P + + Q SS S+S + ++ DAFYR +RP++ + +++SVSLL
Sbjct: 74 HRPTSSSADASGQPLQSSAEAHDSSSIWKPISSSLDAFYRFSRPHTVIGTALSIVSVSLL 133
Query: 75 PLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNKPYLPLACGDFSMGE 134
+++ +D +P + + +V A+ MN Y +NQL D+ IDKVNKP LPLA G++S
Sbjct: 134 AVENLSDVSPLFLTGLLEAVVAALFMNIYIVGLNQLFDIEIDKVNKPTLPLASGEYSPAT 193
Query: 135 GLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTII 194
G+A+ A M+ +G + S PL + I I+G AYSI+L P LRWK + ++AA+ I+
Sbjct: 194 GVALVSAFAAMSFGLGWAVGSQPLFLALFISFILGTAYSINL-PFLRWKRSAVVAALCIL 252
Query: 195 SMNGLLLLFPFFIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVK 242
++ +++ FF+H Q V P FT+P++F A+M ++ IA K
Sbjct: 253 AVRAVIVQLAFFLHIQTFVFRRPAVFTRPLIFATAFMTFFSVVIALFK 300
>sp|B1B3P3|N8DT1_SOPFL Naringenin 8-dimethylallyltransferase 1, chloroplastic OS=Sophora
flavescens GN=N8DT-1 PE=1 SV=1
Length = 410
Score = 120 bits (300), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 67/203 (33%), Positives = 106/203 (52%), Gaps = 1/203 (0%)
Query: 40 SFMQVLNKKCDAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIM 99
S +N D FY+ RPY+ +I+ SL+ ++ +D + I + +V I
Sbjct: 105 SIWDSVNDALDIFYKFCRPYAMFTIVLGATFKSLVAVEKLSDLSLAFFIGWLQVVVAVIC 164
Query: 100 MNNYANAINQLADVHIDKVNKPYLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLV 159
++ + +NQL D+ IDK+NKP LPLA G S + IT +S ++ + ++ S PL
Sbjct: 165 IHIFGVGLNQLCDIEIDKINKPDLPLASGKLSFRNVVIITASSLILGLGFAWIVDSWPLF 224
Query: 160 IGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPFFIHFQKIVLGNPVA 219
I C+V AY++DL PLLRWK P++ A+ I+ + FF+H Q V P
Sbjct: 225 WTVFISCMVASAYNVDL-PLLRWKKYPVLTAINFIADVAVTRSLGFFLHMQTCVFKRPTT 283
Query: 220 FTKPVLFTAAYMVIWNAAIAFVK 242
F +P++F A + I+ IA K
Sbjct: 284 FPRPLIFCTAIVSIYAIVIALFK 306
>sp|B9A1Q4|G4DT_SOYBN Glycinol 4-dimethylallyltransferase OS=Glycine max GN=G4DT PE=1
SV=1
Length = 409
Score = 119 bits (297), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 66/193 (34%), Positives = 105/193 (54%), Gaps = 1/193 (0%)
Query: 50 DAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQ 109
AFY + PY+ + I S SLL ++ +D + +I + ++P + + Y +NQ
Sbjct: 114 SAFYWFSYPYTMIGITLCAFSSSLLAVEKLSDISLSFLIGVLQGVLPQLFIEIYLCGVNQ 173
Query: 110 LADVHIDKVNKPYLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVG 169
L D+ IDK+NKP+LP+A G FS G+ I+ A ++ + S PL+ ++
Sbjct: 174 LYDLEIDKINKPHLPMASGQFSFKTGVIISAAFLALSFGFTWITGSWPLICNLVVIASSW 233
Query: 170 GAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPFFIHFQKIVLGNPVAFTKPVLFTAA 229
AYSID+ PLLRWK P +AA+ +IS L L +F H Q +VL P+ F + + F A
Sbjct: 234 TAYSIDV-PLLRWKRYPFVAAMCMISTWALALPISYFHHMQTVVLKRPIGFPRSLGFLVA 292
Query: 230 YMVIWNAAIAFVK 242
+M ++ +A K
Sbjct: 293 FMTFYSLGLALSK 305
>sp|Q0D576|HPT2_ORYSJ Probable homogentisate phytyltransferase 2, chloroplastic OS=Oryza
sativa subsp. japonica GN=HPT2 PE=3 SV=2
Length = 379
Score = 78.2 bits (191), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 64/227 (28%), Positives = 111/227 (48%), Gaps = 14/227 (6%)
Query: 19 QHAVALAAQDGYSSESELASTSFMQVLNKKCDAFYRLTRPYSCVSIIAALLSVSLLP--- 75
+ AV + +Q G + + L+ T L+ D+ +R RP++ AL S++L+
Sbjct: 59 RDAVRVCSQAGAAGPAPLSKT-----LSDLKDSCWRFLRPHTIRG--TALGSIALVARAL 111
Query: 76 LQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNKPYLPLACGDFSMGEG 135
+++P L+ +AF +V I N Y INQ+ D+ IDKVNKPYLP+A GD S+
Sbjct: 112 IENPQLINWWLVFKAFYGLVALICGNGYIVGINQIYDIRIDKVNKPYLPIAAGDLSVQTA 171
Query: 136 LAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIIS 195
+ + ++ + P + + + +G YS+ PP R K P+ A + I +
Sbjct: 172 WLLVVLFAAAGFSIVVTNFGPFITSLYCLGLFLGTIYSV--PP-FRLKRYPVAAFLIIAT 228
Query: 196 MNGLLLLFPFFIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVK 242
+ G LL F + + + LG ++ PV F ++ ++ IA K
Sbjct: 229 VRGFLLNFGVY-YATRAALGLTFQWSSPVAFITCFVTLFALVIAITK 274
>sp|Q1ACB3|HPT2_ARATH Homogentisate phytyltransferase 2, chloroplastic OS=Arabidopsis
thaliana GN=HPT2 PE=2 SV=1
Length = 386
Score = 74.7 bits (182), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 64/204 (31%), Positives = 101/204 (49%), Gaps = 25/204 (12%)
Query: 50 DAFYRLTRPYSCVSIIAALLSVSLLP---LQSPADFTPKLIIEAFKCMVPAIMMNNYANA 106
+A +R RP++ AL S +L+ +++ L+++A ++ I N Y
Sbjct: 92 NACWRFLRPHTIRG--TALGSTALVTRALIENTHLIKWSLVLKALSGLLALICGNGYIVG 149
Query: 107 INQLADVHIDKVNKPYLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWC 166
INQ+ D+ IDKVNKPYLP+A GD S+ + I A+A G+ LV+GF
Sbjct: 150 INQIYDIGIDKVNKPYLPIAAGDLSVQSAWLLVI---FFAIA-GL------LVVGFNFGP 199
Query: 167 IVGGAYSIDL--------PPLLRWKGNPLMAAVTIISMNGLLLLFPFFIHFQKIVLGNPV 218
+ YS+ L PP LR K P+ A + I ++ G LL F + H + LG P
Sbjct: 200 FITSLYSLGLFLGTIYSVPP-LRMKRFPVAAFLIIATVRGFLLNFGVY-HATRAALGLPF 257
Query: 219 AFTKPVLFTAAYMVIWNAAIAFVK 242
++ PV F +++ ++ IA K
Sbjct: 258 QWSAPVAFITSFVTLFALVIAITK 281
>sp|B1L6Z7|DGGGP_KORCO Digeranylgeranylglyceryl phosphate synthase OS=Korarchaeum
cryptofilum (strain OPF8) GN=Kcr_1480 PE=3 SV=1
Length = 281
Score = 54.7 bits (130), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 67/136 (49%), Gaps = 17/136 (12%)
Query: 48 KCDAFYRLTRPYSCV-SIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANA 106
K A+ ++RP + + SI+ L + S + + +LI+ C++P +++ NA
Sbjct: 3 KLGAYVEISRPKNALMSILGTLTG----WVNSTSVYDGRLILA---CLIPPLVLMA-GNA 54
Query: 107 INQLADVHIDKVNKPYLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWC 166
IN D ID +NKPY P+ G S E L I IA L +A+ I L GFI +
Sbjct: 55 INDYYDAEIDAINKPYRPIPSGRISKREALNIYIALSLFGIALSIFL-------GFIEFL 107
Query: 167 IVGGAYSIDLPPLLRW 182
IV A+S+ RW
Sbjct: 108 IV-TAFSLSWYAYARW 122
>sp|Q9UWY6|DGGGP_SULSO Digeranylgeranylglyceryl phosphate synthase OS=Sulfolobus
solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 /
P2) GN=ubiA-2 PE=1 SV=1
Length = 282
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 49/90 (54%), Gaps = 2/90 (2%)
Query: 107 INQLADVHIDKVNKPYLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWC 166
IN + DV IDK+NKPY P+ G S+ + A++IA ++ +A+ I+L LVI +
Sbjct: 56 INDVYDVEIDKINKPYRPIPSGKISVNKAKALSIALFIIGIALSILLNIYALVIALV--T 113
Query: 167 IVGGAYSIDLPPLLRWKGNPLMAAVTIISM 196
+G Y + GN L+A T +S+
Sbjct: 114 AIGLIYYAKDLKKTGFYGNLLVATTTALSI 143
>sp|A3CW74|DGGGP_METMJ Digeranylgeranylglyceryl phosphate synthase OS=Methanoculleus
marisnigri (strain ATCC 35101 / DSM 1498 / JR1)
GN=Memar_1697 PE=3 SV=1
Length = 279
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 44/82 (53%), Gaps = 7/82 (8%)
Query: 51 AFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQL 110
AF R+TRP++ +++A L ++ + + P L++ ++ A N IN +
Sbjct: 5 AFIRITRPHN--AVVAGLTALIGYLIATGTLTPPSLLLAVIVALITA-----GGNVINDV 57
Query: 111 ADVHIDKVNKPYLPLACGDFSM 132
DV ID++N+P P+ GD S+
Sbjct: 58 RDVEIDRINRPDRPIPAGDISL 79
>sp|B6YW76|DGGGP_THEON Digeranylgeranylglyceryl phosphate synthase OS=Thermococcus
onnurineus (strain NA1) GN=TON_1950 PE=3 SV=1
Length = 276
Score = 39.7 bits (91), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 72/148 (48%), Gaps = 13/148 (8%)
Query: 48 KCDAFYRLTRPYSCV-SIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANA 106
+ AF +TRP++C+ + I LL S++ L D PK + F + N
Sbjct: 2 ELKAFIEITRPHNCILAGIVGLLG-SIVALGHFPD--PKTALLIFLVVTVGCAGGN---T 55
Query: 107 INQLADVHIDKVNKPYLPLACGDFSMGEGLAITIASPLMAV--AMGIMLRSPPLVIGFII 164
IN D IDK+N+P PL G +MG +A+ + L AV A+ M+ ++G I
Sbjct: 56 INDYFDYEIDKINRPERPLPRG--AMGRKVALYYSMLLFAVGLALAYMINIYAFILGVIA 113
Query: 165 WCIVGGAYSIDLPPLLRWKGNPLMAAVT 192
+ + Y+ L P L + GN ++A +T
Sbjct: 114 YVTM-FIYAWKLKP-LPFVGNIVVAGLT 139
>sp|Q46BD9|DGGGP_METBF Digeranylgeranylglyceryl phosphate synthase OS=Methanosarcina
barkeri (strain Fusaro / DSM 804) GN=Mbar_A1863 PE=3
SV=1
Length = 289
Score = 38.5 bits (88), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Query: 63 SIIAALLSVSLLPLQSPADFTPKL--IIEAFKCMVPAIMMNNYANAINQLADVHIDKVNK 120
+II L++ ++L +P+ ++P + + + ++ NAIN DV ID +N+
Sbjct: 24 AIIGTLIAFNILTSNAPSSYSPGEFPLFSSVLIFLAVFLVAGAGNAINDYFDVRIDSINR 83
Query: 121 PYLPLACGDFSMGEGL 136
P P+ G + E L
Sbjct: 84 PDRPIPSGRMKLKEAL 99
>sp|Q57727|DGGGP_METJA Digeranylgeranylglyceryl phosphate synthase OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=MJ0279 PE=3 SV=1
Length = 283
Score = 38.1 bits (87), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 39/93 (41%), Gaps = 5/93 (5%)
Query: 42 MQVLNKKCDAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMN 101
M V +K + L R +C++ + L+ D L++ V A
Sbjct: 1 MGVFMEKLKTYLELIRVKNCITASIGGIIGYLISSNFEIDILKSLLVFFVVFFVCA---- 56
Query: 102 NYANAINQLADVHIDKVNKPYLPLACGDFSMGE 134
Y N IN + D+ ID++NKP PL G + E
Sbjct: 57 -YGNVINDIFDIEIDRINKPSRPLPSGKIKLNE 88
>sp|A9A8Y7|DGGGP_METM6 Digeranylgeranylglyceryl phosphate synthase OS=Methanococcus
maripaludis (strain C6 / ATCC BAA-1332) GN=MmarC6_0995
PE=3 SV=1
Length = 278
Score = 37.0 bits (84), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 4/51 (7%)
Query: 103 YANAINQLADVHIDKVNKPYLPLACGDFSMGEGLAITIASPLMAVAMGIML 153
+ NA+N + D+ IDK+NKP P+ S+GE I S L+ V MG+++
Sbjct: 53 FGNALNDIYDLKIDKINKPKRPIPSKRISLGEA---RIFSYLL-VVMGLII 99
>sp|P26170|BCHG_RHOCB Bacteriochlorophyll synthase 33 kDa chain OS=Rhodobacter capsulatus
(strain ATCC BAA-309 / NBRC 16581 / SB1003) GN=bchG PE=4
SV=1
Length = 304
Score = 36.6 bits (83), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%)
Query: 104 ANAINQLADVHIDKVNKPYLPLACGDFSMGEGLAITIASPLMAVAMGIMLRS 155
+ A N D H+D +N+P+ P+ G GL I IA L+++ +G L S
Sbjct: 68 SQAANDWCDRHVDAINEPHRPIPSGRIPGLWGLYIAIAMSLLSLVVGWQLGS 119
>sp|A4YI21|DGGGP_METS5 Digeranylgeranylglyceryl phosphate synthase OS=Metallosphaera
sedula (strain ATCC 51363 / DSM 5348) GN=Msed_1933 PE=3
SV=1
Length = 284
Score = 36.2 bits (82), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 54/101 (53%), Gaps = 8/101 (7%)
Query: 99 MMNNYANAINQLADVHIDKVNKPYLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPL 158
+++ NAIN + DV ID++NKP P+ G S+ A +++ LM V G++L +
Sbjct: 46 LVDAGGNAINDVYDVEIDRINKPDRPIPSGAVSLRT--ATSLSYGLMGV--GVILSALQG 101
Query: 159 VIGFIIWCIVGGA---YSIDLPPLLRWKGNPLMAAVTIISM 196
+ F++ + A Y+ DL + GN ++A T +S+
Sbjct: 102 YLQFLVALLTSVALIFYARDLKRTGIY-GNLVVATATALSL 141
>sp|Q971A3|DGGGP_SULTO Digeranylgeranylglyceryl phosphate synthase OS=Sulfolobus tokodaii
(strain DSM 16993 / JCM 10545 / NBRC 100140 / 7)
GN=STK_14510 PE=3 SV=1
Length = 278
Score = 36.2 bits (82), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 29/54 (53%)
Query: 107 INQLADVHIDKVNKPYLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVI 160
IN + D+ IDK+NKP PL G + +++I L+ + + ++L +I
Sbjct: 56 INDVFDIEIDKINKPNRPLPSGRIKISRARSLSIVLFLVGIVLSVLLNIYAFII 109
>sp|Q38833|CHLG_ARATH Chlorophyll synthase, chloroplastic OS=Arabidopsis thaliana GN=CHLG
PE=2 SV=1
Length = 387
Score = 36.2 bits (82), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 82 FTPKLIIEAFKCMV-PAIMMNNYANAINQLADVHIDKVNKPYLPLACGDFSMGE 134
+TP+ + ++ CM+ + Y IN D ID +N+PY P+ G S E
Sbjct: 128 WTPEDVAKSILCMMMSGPCLTGYTQTINDWYDRDIDAINEPYRPIPSGAISEPE 181
>sp|A6UVU6|DGGGP_META3 Digeranylgeranylglyceryl phosphate synthase OS=Methanococcus
aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=Maeo_1040
PE=3 SV=1
Length = 279
Score = 35.8 bits (81), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 49/109 (44%), Gaps = 17/109 (15%)
Query: 45 LNKKCDAFYRLTRPYSCVS-----IIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIM 99
+N K + L R +C++ II L++ ++F LI + +
Sbjct: 1 MNLKIKYYLELIRVKNCLTASFGTIIGGLIA---------SNFNFGLIGYILLASLIVFL 51
Query: 100 MNNYANAINQLADVHIDKVNKPYLPLACGDFSMGEGLAITIASPLMAVA 148
+ + NA+N + D+ IDK+NKP PL S+ TI S L+ ++
Sbjct: 52 VCGFGNALNDIQDIEIDKINKPNRPLPSNKISLKSA---TIFSYLLMIS 97
>sp|A0B8A0|DGGGP_METTP Digeranylgeranylglyceryl phosphate synthase OS=Methanosaeta
thermophila (strain DSM 6194 / PT) GN=Mthe_1142 PE=3
SV=1
Length = 267
Score = 35.0 bits (79), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 38/81 (46%), Gaps = 11/81 (13%)
Query: 54 RLTRPYSCVSIIAALLS---VSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQL 110
+ RP +CV AA L+ VS LQS TP L+ A +++ NAIN
Sbjct: 5 EIMRPANCVMAGAASLTGMLVSGALLQSL--HTPVLVFSAV------LLITGGGNAINDY 56
Query: 111 ADVHIDKVNKPYLPLACGDFS 131
D ID VN+P P+ G S
Sbjct: 57 FDREIDAVNRPDRPIPSGRIS 77
>sp|Q5JDN5|DGGGP_PYRKO Digeranylgeranylglyceryl phosphate synthase OS=Pyrococcus
kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1)
GN=TK1957 PE=3 SV=1
Length = 277
Score = 34.7 bits (78), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 41/97 (42%), Gaps = 15/97 (15%)
Query: 50 DAFYRLTRPYSC-----VSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYA 104
AF +TRP++C V ++ ++++ LP A ++ C
Sbjct: 4 KAFIEITRPHNCLLAGIVGVLGSIVAAGGLPELKTAILV--FLVVFLGC--------AGG 53
Query: 105 NAINQLADVHIDKVNKPYLPLACGDFSMGEGLAITIA 141
N IN D IDK+N+P PL G S L ++A
Sbjct: 54 NTINDYFDYEIDKINRPERPLPRGAMSRKAALWYSVA 90
>sp|Q9Z5D6|BCHG_RHOS4 Bacteriochlorophyll synthase 33 kDa chain OS=Rhodobacter
sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM
158) GN=bchG PE=4 SV=1
Length = 302
Score = 34.7 bits (78), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 5/89 (5%)
Query: 104 ANAINQLADVHIDKVNKPYLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFI 163
+ A N D H+D VN+P P+ G GL I + ++++A+G ML P G
Sbjct: 67 SQAANNWCDRHVDAVNEPDRPIPSGRIPGRWGLYIALLMTVLSLAVGWMLG--PWGFGAT 124
Query: 164 IWCIVGG-AYSIDLPPLLR--WKGNPLMA 189
++ ++ AYS++ L R W G L+A
Sbjct: 125 VFGVLAAWAYSVEPIRLKRSGWWGPGLVA 153
>sp|Q12VF3|DGGGP_METBU Digeranylgeranylglyceryl phosphate synthase OS=Methanococcoides
burtonii (strain DSM 6242) GN=Mbur_1679 PE=3 SV=1
Length = 281
Score = 34.3 bits (77), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 99 MMNNYANAINQLADVHIDKVNKPYLPLACGDFSMGEGL 136
++ N +N D+ IDKVNKP P+ G S+ L
Sbjct: 54 LVTGAGNGLNDYFDIEIDKVNKPSRPIPSGKISLKSAL 91
>sp|Q9M3W5|CHLG_AVESA Chlorophyll synthase, chloroplastic OS=Avena sativa GN=CHLG PE=1
SV=1
Length = 378
Score = 33.9 bits (76), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 32/141 (22%), Positives = 56/141 (39%), Gaps = 11/141 (7%)
Query: 3 LQINPCSSFPLKYHPLQHAVALAAQDGYSSESELASTSFMQVLNKK--------CDAFYR 54
L +N SFP+ A + ++ A +SF Q+L K +
Sbjct: 34 LTLNRRRSFPVVCAADADAKETTKKPTIPDKAPAAGSSFNQLLGIKGAKQETNIWKIRLQ 93
Query: 55 LTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMV-PAIMMNNYANAINQLADV 113
LT+P + ++ +L + +T + + ++ CM+ + Y IN D
Sbjct: 94 LTKPVTWPPLVWGVLCGAAA--SGNFHWTVEDVTKSIVCMLMSGPCLTGYTQTINDWYDR 151
Query: 114 HIDKVNKPYLPLACGDFSMGE 134
ID +N+PY P+ G S E
Sbjct: 152 DIDAINEPYRPIPSGAISENE 172
>sp|Q5W6H5|CHLG_ORYSJ Chlorophyll synthase, chloroplastic OS=Oryza sativa subsp. japonica
GN=CHLG PE=2 SV=1
Length = 376
Score = 33.9 bits (76), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 82 FTPKLIIEAFKCMV-PAIMMNNYANAINQLADVHIDKVNKPYLPLACGDFSMGE 134
+T + + ++ CM+ + Y IN D ID +N+PY P+ G S E
Sbjct: 117 WTVEDVAKSIVCMIMSGPCLTGYTQTINDWYDRDIDAINEPYRPIPSGAISENE 170
>sp|C5A1J7|DGGGP_THEGJ Digeranylgeranylglyceryl phosphate synthase OS=Thermococcus
gammatolerans (strain DSM 15229 / JCM 11827 / EJ3)
GN=TGAM_1764 PE=3 SV=1
Length = 276
Score = 33.9 bits (76), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 9/83 (10%)
Query: 48 KCDAFYRLTRPYSCVSIIAALLSV--SLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYAN 105
+ AF +TRP++C +A L+ V S++ L S + K++I F +V ++ N
Sbjct: 2 ELRAFVEITRPHNCA--LAGLVGVLGSMVALGSVPE--GKILILVF--LVVSLGCAG-GN 54
Query: 106 AINQLADVHIDKVNKPYLPLACG 128
IN D ID++N+P PL G
Sbjct: 55 TINDYFDYEIDRINRPERPLPRG 77
>sp|O57753|DGGGP_PYRHO Digeranylgeranylglyceryl phosphate synthase OS=Pyrococcus
horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 /
NBRC 100139 / OT-3) GN=PH0027 PE=3 SV=1
Length = 277
Score = 33.5 bits (75), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 23/88 (26%)
Query: 50 DAFYRLTRPYSC-----VSIIAALLSVSLLPLQSPADFTPKLI----IEAFKCMVPAIMM 100
AF + RP++C V I+ +L++ +P P KLI + F C
Sbjct: 4 KAFVEIMRPHNCILAGIVGILGSLVAYEGIP---PVQ---KLILIFLVVYFGC------- 50
Query: 101 NNYANAINQLADVHIDKVNKPYLPLACG 128
+ N IN DV IDK+N+P P+ G
Sbjct: 51 -SAGNTINDYFDVEIDKINRPNRPIPRG 77
>sp|Q9V2P5|DGGGP_PYRAB Digeranylgeranylglyceryl phosphate synthase OS=Pyrococcus abyssi
(strain GE5 / Orsay) GN=PYRAB00300 PE=3 SV=2
Length = 277
Score = 33.5 bits (75), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 15/86 (17%)
Query: 48 KCDAFYRLTRPYSC-----VSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNN 102
+ AF + RP++C V I+ +L++ +P S ++ C +
Sbjct: 2 EVKAFIEIMRPHNCILAGVVGILGSLVAYEGIP--SIEKLGLVFLVVYLGC--------S 51
Query: 103 YANAINQLADVHIDKVNKPYLPLACG 128
N IN DV ID+VN+P P+ G
Sbjct: 52 AGNTINDYFDVEIDRVNRPNRPIPRG 77
>sp|A8GZR0|UBIA_SHEPA 4-hydroxybenzoate octaprenyltransferase OS=Shewanella pealeana
(strain ATCC 700345 / ANG-SQ1) GN=ubiA PE=3 SV=1
Length = 288
Score = 33.5 bits (75), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 66/157 (42%), Gaps = 17/157 (10%)
Query: 45 LNKKCDAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKL------IIEAFKCMVPAI 98
L K D + RL R + + LL L+ L A P L +I F
Sbjct: 3 LRDKLDVYMRLARMDRPIGTLL-LLWPCLMALTFAAGGLPDLKVFIIFVIGVFSMRACGC 61
Query: 99 MMNNYANAINQLADVHIDKVNKPYLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPL 158
++N+YA+ + D H+++ PLA G+ S E L + + L + + +ML PL
Sbjct: 62 IINDYAD---RKLDAHVERTKGR--PLASGEVSSKEALLLFVVMALFSFGLVLMLN--PL 114
Query: 159 VIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIIS 195
V+ ++G +I P R+ P M T+ S
Sbjct: 115 VVQL---SVIGIILTIIYPFTKRYTNMPQMFLGTVWS 148
>sp|Q8TS44|DGGGP_METAC Digeranylgeranylglyceryl phosphate synthase OS=Methanosarcina
acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 /
C2A) GN=MA_0961 PE=3 SV=1
Length = 289
Score = 33.1 bits (74), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 11/94 (11%)
Query: 52 FYRLTRPYSCV-----SIIAALLSVSLL---PLQSPADFT-PKLIIEAFKCMVPAIMMNN 102
+ L R +C+ ++I L++ ++L PL S +FT P ++A + +++
Sbjct: 8 YLELMRYGNCLMAGFAAVIGTLIAFNILTSGPLSS--NFTGPFPFLDAGFVFLVVFLVSG 65
Query: 103 YANAINQLADVHIDKVNKPYLPLACGDFSMGEGL 136
NAIN D+ ID +N+P P+ G E L
Sbjct: 66 AGNAINDYFDIKIDSINRPERPIPSGRVQAKEAL 99
>sp|C6A2C9|DGGGP_THESM Digeranylgeranylglyceryl phosphate synthase OS=Thermococcus
sibiricus (strain MM 739 / DSM 12597) GN=TSIB_0711 PE=3
SV=1
Length = 279
Score = 32.7 bits (73), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 19/90 (21%)
Query: 48 KCDAFYRLTRPYSC-----VSIIAALLSVSLLPLQSPADFTPKLIIEAF-KCMVPAIMMN 101
KC F + RP +C V I+ A +++ LP P + + + F +C
Sbjct: 4 KC--FIEILRPINCLIAGLVGILGATVALGHLP---PIKTSLLIFLVVFLEC-------- 50
Query: 102 NYANAINQLADVHIDKVNKPYLPLACGDFS 131
++ N IN D IDK+N+P PL G S
Sbjct: 51 SWGNIINDYFDYEIDKINRPNRPLPRGALS 80
>sp|A6VHU1|DGGGP_METM7 Digeranylgeranylglyceryl phosphate synthase OS=Methanococcus
maripaludis (strain C7 / ATCC BAA-1331) GN=MmarC7_0950
PE=3 SV=1
Length = 278
Score = 32.7 bits (73), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 54/124 (43%), Gaps = 28/124 (22%)
Query: 51 AFYRLTRPYSCVS-----IIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYAN 105
A++ L R +C++ I L++ S L + D I+ C + N
Sbjct: 5 AYFELIRLKNCLTASFGAFIGGLIA-SYFNLATVYDLILASIVVFLVC--------GFGN 55
Query: 106 AINQLADVHIDKVNKPYLPLACGDFSMGE-----------GLAITI---ASPLMAVAMGI 151
A+N + D+ IDK+NKP P+ S+ + GL I++ A LMAV I
Sbjct: 56 ALNDIYDLKIDKINKPERPIPSKRLSLTDARVFSYLLVFVGLFISLFNMACFLMAVLNSI 115
Query: 152 MLRS 155
+L+
Sbjct: 116 VLQQ 119
>sp|Q9ZSR7|TPT_ARATH Triose phosphate/phosphate translocator TPT, chloroplastic
OS=Arabidopsis thaliana GN=TPT PE=2 SV=1
Length = 410
Score = 32.7 bits (73), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 57/119 (47%), Gaps = 6/119 (5%)
Query: 43 QVLNKKCDAF----YRLTRPYSCVSIIAALLSVSL-LPLQSPADFTP-KLIIEAFKCMVP 96
+LNKK + Y ++ + V ++ L+S S+ LP ++P D K++I C
Sbjct: 123 NILNKKIYNYFPYPYFVSVIHLFVGVVYCLISWSVGLPKRAPIDSNLLKVLIPVAVCHAL 182
Query: 97 AIMMNNYANAINQLADVHIDKVNKPYLPLACGDFSMGEGLAITIASPLMAVAMGIMLRS 155
+ +N + A ++ H K +P+ A F MG+ + IT+ L V +G+ + S
Sbjct: 183 GHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQFIMGQSIPITLWLSLAPVVLGVAMAS 241
>sp|A2SRL0|DGGGP_METLZ Digeranylgeranylglyceryl phosphate synthase OS=Methanocorpusculum
labreanum (strain ATCC 43576 / DSM 4855 / Z)
GN=Mlab_0795 PE=3 SV=1
Length = 282
Score = 32.3 bits (72), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 49/108 (45%), Gaps = 15/108 (13%)
Query: 104 ANAINQLADVHIDKVNKPYLPLACGDFSMGEGLAITIASPLMAVA-MGIMLRSPPLVIGF 162
N +N D+ IDKVN+P P+ G SP AV GI+ + F
Sbjct: 51 GNVLNDYFDLEIDKVNRPDRPIPSGK-----------VSPKGAVVWAGILFAAGVAAACF 99
Query: 163 I-IWCIVGGAYSIDLPPLL--RWKGNPLMAAVTIISMNGLLLLFPFFI 207
IWC+ ++ L + ++KG P + +++ ++G + LF F+
Sbjct: 100 TNIWCLAIALVNVVLLIIYAAKFKGIPFLGNLSVAYLSGSIFLFGGFL 147
>sp|Q2FN44|DGGGP_METHJ Digeranylgeranylglyceryl phosphate synthase OS=Methanospirillum
hungatei (strain JF-1 / DSM 864) GN=Mhun_0625 PE=3 SV=1
Length = 280
Score = 32.3 bits (72), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 47/115 (40%), Gaps = 23/115 (20%)
Query: 51 AFYRLTRPY-SCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQ 109
A+ + RP + V+ +A +L+ + PA+F F + + N IN
Sbjct: 5 AYLSIIRPVNAVVAGLAGILASIIATGSIPAEF--------FWIFCIVLTITGAGNVIND 56
Query: 110 LADVHIDKVNKPYLPLACGD-------------FSMGEGLAITIAS-PLMAVAMG 150
D ID +N+P P+ G F +G G+AI PL +AMG
Sbjct: 57 YYDKEIDAINQPDRPIPSGQIIPGHALMYAILLFLIGNGIAILFTPLPLAGIAMG 111
>sp|Q5R0Y6|CYOE_IDILO Protoheme IX farnesyltransferase OS=Idiomarina loihiensis (strain
ATCC BAA-735 / DSM 15497 / L2-TR) GN=cyoE PE=3 SV=1
Length = 298
Score = 32.3 bits (72), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 83/201 (41%), Gaps = 48/201 (23%)
Query: 34 SELASTSFMQVLNKKCDAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKC 93
+A+ + + N + LT+P ++A LL +++ + T +L+ + K
Sbjct: 2 QSVATNNITKTRNAHWRDYLELTKP----RVVALLLLTAVVGMCLA---TEELV--SLKV 52
Query: 94 MVPAI----MMNNYANAINQLADVHIDKVNKPYL--PLACGDFSMGEGLAITIASPLMAV 147
+VPA+ +M+ A AIN L D HID L PL G+ S + A
Sbjct: 53 LVPALTGIGLMSAAAAAINHLVDRHIDAKMARTLRRPLPQGNLSPAK-------VTTFAA 105
Query: 148 AMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPFFI 207
++G VIGF+ L W NPL A +T SM G +++ F+
Sbjct: 106 SIG--------VIGFV--------------TLYAWV-NPLTAWLTFASMVGYAVVYTMFL 142
Query: 208 HF---QKIVLGNPVAFTKPVL 225
Q IV+G P+L
Sbjct: 143 KRATPQNIVIGGLAGAAPPLL 163
>sp|A1S2M4|UBIA_SHEAM 4-hydroxybenzoate octaprenyltransferase OS=Shewanella amazonensis
(strain ATCC BAA-1098 / SB2B) GN=ubiA PE=3 SV=1
Length = 290
Score = 32.3 bits (72), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 49/111 (44%), Gaps = 12/111 (10%)
Query: 42 MQVLNKKCDAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKL------IIEAFKCMV 95
M + +K DA+YRL R + + LL L+ L AD P L II
Sbjct: 1 MSKMAQKWDAYYRLMRLDRPIGTM-LLLWPCLMALLLAADGMPDLRVLIIFIIGVVVMRA 59
Query: 96 PAIMMNNYANAINQLADVHIDKVNKPYLPLACGDFSMGEGLAITIASPLMA 146
++N+YA ++ D H+ + PLA G+ ++ E L + + L A
Sbjct: 60 CGCIINDYA---DRKLDSHVARTRSR--PLASGEVTVAEALTLFVVLGLFA 105
>sp|Q8BKX6|SMG1_MOUSE Serine/threonine-protein kinase SMG1 OS=Mus musculus GN=Smg1 PE=1
SV=3
Length = 3658
Score = 32.0 bits (71), Expect = 3.8, Method: Composition-based stats.
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 7/67 (10%)
Query: 63 SIIAALLSVSLLPLQSPADFTPKLIIEAFKCMV------PAIMMNNYANAINQLADVHID 116
S + L+ SL + D TP+L+ + KC++ P I N+ + ++ L HID
Sbjct: 268 SSVMQLVMTSLQSILENVD-TPELLCKCVKCILLVARCYPHIFSTNFRDTVDILVGWHID 326
Query: 117 KVNKPYL 123
KP L
Sbjct: 327 HTQKPSL 333
>sp|Q96Q15|SMG1_HUMAN Serine/threonine-protein kinase SMG1 OS=Homo sapiens GN=SMG1 PE=1
SV=3
Length = 3661
Score = 32.0 bits (71), Expect = 3.8, Method: Composition-based stats.
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 7/67 (10%)
Query: 63 SIIAALLSVSLLPLQSPADFTPKLIIEAFKCMV------PAIMMNNYANAINQLADVHID 116
S + L+ SL + D TP+L+ + KC++ P I N+ + ++ L HID
Sbjct: 270 SSVMQLVMTSLQSILENVD-TPELLCKCVKCILLVARCYPHIFSTNFRDTVDILVGWHID 328
Query: 117 KVNKPYL 123
KP L
Sbjct: 329 HTQKPSL 335
>sp|A6UQV8|DGGGP_METVS Digeranylgeranylglyceryl phosphate synthase OS=Methanococcus
vannielii (strain SB / ATCC 35089 / DSM 1224)
GN=Mevan_0977 PE=3 SV=1
Length = 278
Score = 32.0 bits (71), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/76 (22%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Query: 50 DAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQ 109
A++ L R +C++ L L+ ++FT + + + + N++N
Sbjct: 4 KAYFELIRLKNCLTAGFGALISGLIA----SNFTFGALFPLILAFLVVFFICGFGNSLND 59
Query: 110 LADVHIDKVNKPYLPL 125
+ D+ ID++NKP+ P+
Sbjct: 60 IYDLKIDRINKPFRPI 75
>sp|Q8PV96|DGGGP_METMA Digeranylgeranylglyceryl phosphate synthase OS=Methanosarcina mazei
(strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833
/ OCM 88) GN=MM_2075 PE=3 SV=2
Length = 289
Score = 32.0 bits (71), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 46/109 (42%), Gaps = 15/109 (13%)
Query: 99 MMNNYANAINQLADVHIDKVNKPYLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPL 158
+++ NAIN D+ ID +N+P P+ G E A +L +
Sbjct: 62 LVSGAGNAINDYFDIKIDSINRPERPIPSGRVKAKE-----------AFYFSYLLFALGT 110
Query: 159 VIGFIIWCIVGGAYSIDLPPLLRW----KGNPLMAAVTIISMNGLLLLF 203
+I F I I G + L+ + KG PL+ ++I + G + LF
Sbjct: 111 LIAFSINSICGSIALFNSLLLILYAKTLKGTPLLGNLSIGYLTGSVFLF 159
>sp|Q8TZM7|DGGGP_PYRFU Digeranylgeranylglyceryl phosphate synthase OS=Pyrococcus furiosus
(strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)
GN=PF1963 PE=3 SV=1
Length = 277
Score = 32.0 bits (71), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 36/89 (40%), Gaps = 15/89 (16%)
Query: 48 KCDAFYRLTRPYSC-----VSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNN 102
+ F + RP++C V I+ AL++ +P T + F C +
Sbjct: 2 EVKGFIEIMRPHNCILAGIVGILGALVAYEGIP--DIKTLTLIFWVVYFGC--------S 51
Query: 103 YANAINQLADVHIDKVNKPYLPLACGDFS 131
N N D IDK+N+P PL G S
Sbjct: 52 GGNTANDYFDYEIDKINRPNRPLPRGAMS 80
>sp|P21727|TPT_PEA Triose phosphate/phosphate translocator, chloroplastic OS=Pisum
sativum PE=1 SV=1
Length = 402
Score = 32.0 bits (71), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 57/120 (47%), Gaps = 6/120 (5%)
Query: 42 MQVLNKKCDAF----YRLTRPYSCVSIIAALLSVSL-LPLQSPADFTP-KLIIEAFKCMV 95
+LNKK + Y ++ + V ++ L+S ++ LP ++P D KL+I C
Sbjct: 114 FNILNKKIYNYFPYPYFVSVIHLAVGVVYCLVSWTVGLPKRAPIDGNLLKLLIPVAVCHA 173
Query: 96 PAIMMNNYANAINQLADVHIDKVNKPYLPLACGDFSMGEGLAITIASPLMAVAMGIMLRS 155
+ +N + A ++ H K +P+ A F +G+ + IT+ L V +G+ + S
Sbjct: 174 LGHVTSNVSFAAVAVSFTHTVKALEPFFNAAASQFILGQSIPITLWLSLAPVVIGVSMAS 233
>sp|Q1GXB3|UBIA_METFK 4-hydroxybenzoate octaprenyltransferase OS=Methylobacillus
flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=ubiA
PE=3 SV=1
Length = 296
Score = 31.6 bits (70), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 10/95 (10%)
Query: 45 LNKKCDAFYRLTRPYSCVSIIAALL-SVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNY 103
L +K +A+YRLTR + I+ L ++ + L SP + L++ F + ++M +
Sbjct: 6 LRQKLEAYYRLTRLDKPIGILLLLWPTLWGIWLASPG-WPDGLVLFVF--IAGTVLMRSA 62
Query: 104 ANAINQLADV----HIDKVNKPYLPLACGDFSMGE 134
+N LAD H+++ + PL GD + E
Sbjct: 63 GCVMNDLADRNFDGHVERTRQR--PLVTGDVTTKE 95
>sp|Q64TC3|Y2507_BACFR Uncharacterized transporter BF2507 OS=Bacteroides fragilis (strain
YCH46) GN=BF2507 PE=3 SV=1
Length = 562
Score = 31.2 bits (69), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 50/111 (45%), Gaps = 10/111 (9%)
Query: 92 KCMVPAIMMNNYANAINQLADVHIDKVNKPYLPLACGDFS--MGEGLAITIASPLMAVAM 149
K + + NN+ ++ ++ +D V P L L GD +G LA++ A ++ +M
Sbjct: 317 KTLAQLKIRNNFGASVTRVNRSGVDLVASPQLQLQMGDRVTIVGSELAVSHAEKVLGNSM 376
Query: 150 GIMLRSP---PLVIGFIIWCIVGGA----YSIDLPPLLRWKGNPLMAAVTI 193
L P P+ +G + CI+G I P L G PL+ ++ I
Sbjct: 377 K-RLNHPNLIPIFLGIALGCILGSIPFMFPGIPQPVKLGLAGGPLIVSILI 426
>sp|P11869|TPT_SPIOL Triose phosphate/phosphate translocator, chloroplastic OS=Spinacia
oleracea PE=1 SV=1
Length = 404
Score = 31.2 bits (69), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 56/119 (47%), Gaps = 6/119 (5%)
Query: 43 QVLNKKCDAF----YRLTRPYSCVSIIAALLSVSL-LPLQSPADFTP-KLIIEAFKCMVP 96
+LNKK + Y ++ + V ++ L S S+ LP ++P D KL+I C
Sbjct: 117 NILNKKIYNYFPYPYFVSVIHLFVGVVYCLASWSVGLPKRAPMDSKLLKLLIPVAVCHAI 176
Query: 97 AIMMNNYANAINQLADVHIDKVNKPYLPLACGDFSMGEGLAITIASPLMAVAMGIMLRS 155
+ +N + A ++ H K +P+ A F +G+ + IT+ L V +G+ + S
Sbjct: 177 GHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQFVLGQSIPITLWLSLAPVVIGVSMAS 235
>sp|Q3INH7|DGGGP_NATPD Digeranylgeranylglyceryl phosphate synthase OS=Natronomonas
pharaonis (strain DSM 2160 / ATCC 35678) GN=NP_4470A
PE=3 SV=1
Length = 277
Score = 31.2 bits (69), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Query: 93 CMVPAIMMNNYANAINQLADVHIDKVNKPYLPLACGDFSMGEGLAITIASPLMAVAMGIM 152
+V ++ NAIN D ID +N+P P+ G S L ++A L AVA+ +
Sbjct: 42 AVVATVLATGAGNAINDYFDRDIDAINEPDRPIPRGAVSPRGALVYSVA--LFAVAVVLT 99
Query: 153 LRSPPLVI 160
L P L I
Sbjct: 100 LLLPWLAI 107
>sp|A4G0P3|DGGGP_METM5 Digeranylgeranylglyceryl phosphate synthase OS=Methanococcus
maripaludis (strain C5 / ATCC BAA-1333) GN=MmarC5_1730
PE=3 SV=1
Length = 278
Score = 31.2 bits (69), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 103 YANAINQLADVHIDKVNKPYLPL 125
+ NA+N + D+ ID++NKP P+
Sbjct: 53 FGNALNDIYDLKIDRINKPERPI 75
>sp|Q4J8K2|DGGGP_SULAC Digeranylgeranylglyceryl phosphate synthase OS=Sulfolobus
acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 /
NBRC 15157 / NCIMB 11770) GN=Saci_1565 PE=3 SV=1
Length = 275
Score = 31.2 bits (69), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 10/66 (15%)
Query: 107 INQLADVHIDKVNKPYLPLACGDFSMGEGLAITIASPLMAV--AMGIMLRSPPLVI--GF 162
IN + D+ +DK+NKP PL G +A+ IA V A+G+++ P +I GF
Sbjct: 55 INDVYDIEVDKINKPERPLPSGR------IAVNIARRFSIVLFAVGLIISIPLGLIPFGF 108
Query: 163 IIWCIV 168
+ IV
Sbjct: 109 ALITIV 114
>sp|A5ULR8|DGGGP_METS3 Digeranylgeranylglyceryl phosphate synthase OS=Methanobrevibacter
smithii (strain PS / ATCC 35061 / DSM 861) GN=Msm_0941
PE=3 SV=1
Length = 283
Score = 31.2 bits (69), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 47/110 (42%), Gaps = 22/110 (20%)
Query: 104 ANAINQLADVHIDKVNKPYLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFI 163
N IN D ID +NKP P+ G S+ A A L +A ++GF+
Sbjct: 48 GNVINDYFDYKIDLINKPQRPIPSGRISLDN--AKNYAYLLFILAA---------IVGFL 96
Query: 164 IWCIVGG-------AYSIDLPPLL---RWKGNPLMAAVTIISMNGLLLLF 203
I C+V +S D+ L + K PL+ +T+ M GL +F
Sbjct: 97 ISCLVDTWIPCTIVIFS-DIILYLYAYKLKSTPLIGNLTVGFMTGLCFIF 145
>sp|Q8TWS9|DGGGP_METKA Digeranylgeranylglyceryl phosphate synthase OS=Methanopyrus
kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC
100938) GN=MK0953 PE=3 SV=1
Length = 271
Score = 31.2 bits (69), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 13/57 (22%)
Query: 105 NAINQLADVHIDKVNKPYLPL-------------ACGDFSMGEGLAITIASPLMAVA 148
NAIN D +D VN+P P+ A G F++G G+A I +A+A
Sbjct: 50 NAINDYFDAEVDAVNRPDRPIPSGRVSPRSARMFALGCFAVGVGMATVINRMCLAIA 106
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.327 0.139 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,566,339
Number of Sequences: 539616
Number of extensions: 3341034
Number of successful extensions: 9233
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 9190
Number of HSP's gapped (non-prelim): 69
length of query: 249
length of database: 191,569,459
effective HSP length: 115
effective length of query: 134
effective length of database: 129,513,619
effective search space: 17354824946
effective search space used: 17354824946
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 60 (27.7 bits)