Query 025718
Match_columns 249
No_of_seqs 192 out of 1655
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 08:47:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025718.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025718hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02878 homogentisate phytylt 100.0 1.7E-35 3.6E-40 262.4 17.9 176 72-248 7-182 (280)
2 PRK12887 ubiA tocopherol phyty 100.0 5.7E-34 1.2E-38 258.5 22.0 205 40-249 4-209 (308)
3 PRK09573 (S)-2,3-di-O-geranylg 100.0 8.2E-29 1.8E-33 221.8 19.2 180 48-249 2-181 (279)
4 PLN00012 chlorophyll synthetas 100.0 1.6E-28 3.4E-33 227.8 21.6 191 45-249 81-279 (375)
5 PRK12882 ubiA prenyltransferas 100.0 5.2E-28 1.1E-32 216.2 19.5 182 48-249 3-184 (276)
6 TIGR01476 chlor_syn_BchG bacte 100.0 2.8E-28 6E-33 218.7 17.7 186 50-249 1-188 (283)
7 PRK07566 bacteriochlorophyll/c 100.0 6.4E-28 1.4E-32 219.5 20.1 192 46-249 24-216 (314)
8 PRK12884 ubiA prenyltransferas 100.0 2.4E-27 5.2E-32 212.0 20.5 181 47-249 2-182 (279)
9 PRK12392 bacteriochlorophyll c 100.0 4.6E-27 1E-31 215.0 22.3 192 45-249 8-207 (331)
10 TIGR02056 ChlG chlorophyll syn 100.0 2.4E-27 5.1E-32 215.1 20.3 192 44-249 11-210 (306)
11 PRK13106 ubiA prenyltransferas 100.0 2.6E-27 5.5E-32 214.2 19.0 191 44-249 10-204 (300)
12 PRK12895 ubiA prenyltransferas 100.0 4.7E-27 1E-31 211.0 20.2 183 48-249 2-186 (286)
13 COG0382 UbiA 4-hydroxybenzoate 100.0 4.8E-27 1E-31 211.3 20.1 183 45-248 6-193 (289)
14 PRK12883 ubiA prenyltransferas 100.0 4.2E-27 9.2E-32 210.5 19.2 180 48-249 2-181 (277)
15 PRK12874 ubiA prenyltransferas 100.0 6.4E-27 1.4E-31 210.9 19.9 188 43-249 2-194 (291)
16 TIGR01475 ubiA_other putative 99.9 1.8E-26 4E-31 206.9 18.8 183 48-249 1-185 (282)
17 PRK12886 ubiA prenyltransferas 99.9 1.9E-25 4.1E-30 201.4 21.0 184 45-249 4-189 (291)
18 PRK12324 phosphoribose diphosp 99.9 6E-26 1.3E-30 204.6 17.7 170 46-234 8-179 (295)
19 PRK12870 ubiA 4-hydroxybenzoat 99.9 9.8E-26 2.1E-30 203.1 17.7 184 45-249 5-193 (290)
20 PRK12847 ubiA 4-hydroxybenzoat 99.9 2.2E-25 4.7E-30 200.3 19.7 184 46-249 4-192 (285)
21 PRK08238 hypothetical protein; 99.9 7.3E-26 1.6E-30 216.2 17.0 182 45-248 187-370 (479)
22 PRK13362 protoheme IX farnesyl 99.9 4.4E-25 9.6E-30 200.2 20.7 184 46-248 10-199 (306)
23 PRK12869 ubiA protoheme IX far 99.9 3E-25 6.6E-30 198.9 19.3 182 48-248 1-188 (279)
24 PRK04375 protoheme IX farnesyl 99.9 5.6E-25 1.2E-29 198.7 20.0 183 46-248 7-196 (296)
25 PRK12848 ubiA 4-hydroxybenzoat 99.9 2.1E-24 4.5E-29 193.7 19.5 183 46-249 2-189 (282)
26 PRK12888 ubiA prenyltransferas 99.9 1.1E-24 2.3E-29 195.9 17.5 183 48-249 1-186 (284)
27 PRK13595 ubiA prenyltransferas 99.9 4E-24 8.7E-29 191.6 20.8 184 46-249 9-196 (292)
28 PRK12878 ubiA 4-hydroxybenzoat 99.9 5E-24 1.1E-28 193.9 19.9 188 43-249 24-219 (314)
29 PRK06080 1,4-dihydroxy-2-napht 99.9 6.7E-24 1.4E-28 191.1 20.1 185 49-249 3-195 (293)
30 PRK12873 ubiA prenyltransferas 99.9 2.3E-24 5E-29 194.0 16.8 185 46-249 4-197 (294)
31 PRK05951 ubiA prenyltransferas 99.9 1.4E-23 3E-28 189.7 20.1 188 47-249 2-198 (296)
32 TIGR01474 ubiA_proteo 4-hydrox 99.9 1.9E-23 4.1E-28 187.5 20.3 180 50-249 2-187 (281)
33 PRK13592 ubiA prenyltransferas 99.9 5E-24 1.1E-28 190.6 15.6 145 90-247 48-200 (299)
34 TIGR01473 cyoE_ctaB protoheme 99.9 2.2E-23 4.7E-28 186.8 19.6 146 50-206 1-149 (280)
35 PLN02809 4-hydroxybenzoate non 99.9 2.4E-23 5.3E-28 187.4 18.5 186 46-249 3-193 (289)
36 PRK12876 ubiA prenyltransferas 99.9 3.7E-23 8.1E-28 186.4 19.6 186 47-249 2-199 (300)
37 PRK13387 1,4-dihydroxy-2-napht 99.9 1.3E-22 2.9E-27 184.8 19.3 192 49-249 3-216 (317)
38 COG0109 CyoE Polyprenyltransfe 99.9 1.7E-22 3.6E-27 180.4 12.2 183 45-244 14-203 (304)
39 PRK12871 ubiA prenyltransferas 99.9 4.9E-21 1.1E-25 173.1 18.5 184 47-249 3-202 (297)
40 TIGR00751 menA 1,4-dihydroxy-2 99.9 1.8E-20 4E-25 168.4 18.9 177 57-249 1-191 (284)
41 PLN02776 prenyltransferase 99.9 3.6E-20 7.7E-25 169.6 19.3 162 55-236 1-165 (341)
42 PRK07419 1,4-dihydroxy-2-napht 99.8 5.2E-20 1.1E-24 166.8 18.4 187 46-249 9-201 (304)
43 PLN02922 prenyltransferase 99.8 1E-19 2.3E-24 165.6 19.9 190 47-249 13-215 (315)
44 PRK13105 ubiA prenyltransferas 99.8 1.5E-19 3.3E-24 162.1 19.4 181 49-249 1-187 (282)
45 PF01040 UbiA: UbiA prenyltran 99.8 5.6E-20 1.2E-24 160.8 14.5 144 93-249 28-173 (257)
46 PRK12872 ubiA prenyltransferas 99.8 2.8E-19 6E-24 160.2 17.8 186 47-249 2-188 (285)
47 PRK12875 ubiA prenyltransferas 99.8 2.7E-18 5.9E-23 154.2 20.1 180 46-249 5-192 (282)
48 TIGR02235 menA_cyano-plnt 1,4- 99.8 2.4E-18 5.3E-23 154.7 19.6 181 52-249 2-188 (285)
49 COG1575 MenA 1,4-dihydroxy-2-n 99.8 5.9E-18 1.3E-22 151.6 18.9 188 47-249 6-203 (303)
50 PRK13591 ubiA prenyltransferas 99.8 5E-18 1.1E-22 153.1 17.4 138 96-249 66-206 (307)
51 KOG1381 Para-hydroxybenzoate-p 99.7 9.5E-19 2E-23 153.2 4.2 173 40-230 55-235 (353)
52 KOG1380 Heme A farnesyltransfe 99.3 6E-13 1.3E-17 119.4 2.5 143 47-203 92-237 (409)
53 KOG4581 Predicted membrane pro 97.7 3.7E-06 8.1E-11 73.0 -2.2 148 47-200 59-214 (359)
54 PRK13591 ubiA prenyltransferas 94.3 0.18 4E-06 46.0 7.7 66 106-174 197-271 (307)
55 PRK12872 ubiA prenyltransferas 92.9 0.44 9.6E-06 42.5 7.6 43 99-144 172-215 (285)
56 PRK13387 1,4-dihydroxy-2-napht 92.3 0.55 1.2E-05 43.1 7.5 48 97-147 198-246 (317)
57 TIGR01475 ubiA_other putative 91.2 4.3 9.3E-05 36.3 12.0 33 97-129 167-200 (282)
58 COG1575 MenA 1,4-dihydroxy-2-n 90.9 1.3 2.9E-05 40.4 8.2 48 95-145 183-231 (303)
59 PRK13105 ubiA prenyltransferas 90.7 1.1 2.3E-05 40.6 7.5 52 100-154 172-224 (282)
60 PLN02922 prenyltransferase 90.3 1.3 2.9E-05 40.5 8.0 44 99-145 199-243 (315)
61 PLN00012 chlorophyll synthetas 90.2 1.4 3E-05 41.5 8.0 31 99-129 263-294 (375)
62 PRK07419 1,4-dihydroxy-2-napht 90.1 1.3 2.8E-05 40.5 7.6 44 99-145 185-229 (304)
63 PRK06080 1,4-dihydroxy-2-napht 89.5 3.7 8E-05 36.8 10.0 46 99-147 179-225 (293)
64 PRK12392 bacteriochlorophyll c 88.9 1.4 3.1E-05 40.7 7.0 34 98-131 190-224 (331)
65 PRK07566 bacteriochlorophyll/c 88.1 2.1 4.5E-05 39.1 7.5 29 101-129 202-231 (314)
66 TIGR01474 ubiA_proteo 4-hydrox 88.0 2.4 5.3E-05 38.0 7.8 36 96-131 168-204 (281)
67 PRK13106 ubiA prenyltransferas 87.8 3.5 7.6E-05 37.6 8.7 40 96-135 185-225 (300)
68 PRK12875 ubiA prenyltransferas 87.8 8 0.00017 34.9 11.0 50 97-149 174-224 (282)
69 TIGR02056 ChlG chlorophyll syn 87.5 2.9 6.3E-05 38.0 8.0 41 99-142 194-235 (306)
70 PRK12888 ubiA prenyltransferas 87.4 4.4 9.5E-05 36.5 9.1 35 96-130 167-202 (284)
71 TIGR01476 chlor_syn_BchG bacte 86.7 3.3 7.2E-05 37.0 7.9 29 101-129 174-203 (283)
72 PRK11383 hypothetical protein; 86.6 9.9 0.00021 30.9 9.6 52 193-247 76-128 (145)
73 PRK12884 ubiA prenyltransferas 86.3 3.4 7.4E-05 36.7 7.7 32 98-129 165-197 (279)
74 PRK12847 ubiA 4-hydroxybenzoat 86.3 11 0.00024 33.7 11.1 33 98-130 175-208 (285)
75 PRK12871 ubiA prenyltransferas 86.1 2.6 5.6E-05 38.3 6.9 34 97-130 184-218 (297)
76 TIGR02235 menA_cyano-plnt 1,4- 86.0 3.4 7.5E-05 37.3 7.6 46 99-147 172-218 (285)
77 PRK12886 ubiA prenyltransferas 85.5 1.9 4.2E-05 39.0 5.7 30 101-130 175-205 (291)
78 PRK12887 ubiA tocopherol phyty 85.3 6.5 0.00014 35.9 9.1 33 97-129 191-224 (308)
79 PRK05951 ubiA prenyltransferas 85.0 18 0.00038 32.7 11.8 33 100-135 183-216 (296)
80 PRK09573 (S)-2,3-di-O-geranylg 84.9 3.1 6.7E-05 37.2 6.7 32 98-129 164-196 (279)
81 PRK12883 ubiA prenyltransferas 83.9 4.5 9.8E-05 36.0 7.3 29 101-129 167-196 (277)
82 PRK12882 ubiA prenyltransferas 82.6 13 0.00028 33.0 9.8 42 98-142 167-209 (276)
83 PRK12848 ubiA 4-hydroxybenzoat 82.0 8.5 0.00018 34.5 8.4 36 96-131 170-206 (282)
84 PRK12870 ubiA 4-hydroxybenzoat 77.9 11 0.00024 34.0 7.8 38 96-133 174-212 (290)
85 PRK12895 ubiA prenyltransferas 77.2 41 0.00088 30.4 11.2 35 95-129 166-201 (286)
86 PRK12874 ubiA prenyltransferas 77.1 5.4 0.00012 36.1 5.5 33 98-130 177-210 (291)
87 TIGR00751 menA 1,4-dihydroxy-2 75.0 14 0.00029 33.4 7.5 44 100-146 176-220 (284)
88 PF01040 UbiA: UbiA prenyltran 72.9 8.9 0.00019 32.9 5.7 27 99-125 157-184 (257)
89 PRK12878 ubiA 4-hydroxybenzoat 71.6 22 0.00047 32.5 8.1 34 97-130 201-235 (314)
90 COG0382 UbiA 4-hydroxybenzoate 69.8 82 0.0018 28.1 18.4 23 99-121 62-85 (289)
91 PRK12876 ubiA prenyltransferas 66.5 1E+02 0.0022 28.2 11.2 27 105-131 189-216 (300)
92 PLN02878 homogentisate phytylt 63.5 40 0.00087 30.5 7.9 42 99-143 167-209 (280)
93 PRK12873 ubiA prenyltransferas 58.1 1.5E+02 0.0031 27.0 10.6 24 106-129 188-212 (294)
94 COG4147 DhlC Predicted symport 54.6 24 0.00053 34.4 5.2 93 95-203 360-460 (529)
95 TIGR00844 c_cpa1 na(+)/h(+) an 53.0 2.9E+02 0.0064 28.9 12.9 30 116-145 158-187 (810)
96 COG1295 Rbn Ribonuclease BN fa 50.0 2E+02 0.0043 26.0 12.3 40 166-207 202-244 (303)
97 PRK12869 ubiA protoheme IX far 49.4 40 0.00088 30.1 5.6 22 108-129 179-201 (279)
98 PLN02776 prenyltransferase 48.5 2.2E+02 0.0047 26.5 10.3 39 111-149 174-215 (341)
99 PRK13595 ubiA prenyltransferas 46.9 80 0.0017 28.8 7.0 51 101-154 182-233 (292)
100 PRK04214 rbn ribonuclease BN/u 45.8 2.5E+02 0.0054 26.5 10.6 17 99-115 116-132 (412)
101 PRK13592 ubiA prenyltransferas 45.5 45 0.00098 30.5 5.2 28 222-249 46-73 (299)
102 TIGR02711 symport_actP cation/ 42.4 3.3E+02 0.0072 26.7 11.2 47 100-152 376-422 (549)
103 TIGR01473 cyoE_ctaB protoheme 42.2 91 0.002 27.7 6.7 20 110-129 180-200 (280)
104 PLN02809 4-hydroxybenzoate non 40.1 1.6E+02 0.0035 26.5 8.0 25 106-130 184-209 (289)
105 PRK09442 panF sodium/panthothe 39.9 3.4E+02 0.0075 25.9 13.8 46 100-151 341-386 (483)
106 PRK04375 protoheme IX farnesyl 39.8 2.8E+02 0.0061 24.9 10.6 24 106-129 185-209 (296)
107 TIGR03750 conj_TIGR03750 conju 36.4 1.4E+02 0.003 23.3 5.9 34 115-150 5-38 (111)
108 PF05360 YiaAB: yiaA/B two hel 33.7 1.5E+02 0.0031 19.8 6.3 34 213-246 20-53 (53)
109 PF06738 DUF1212: Protein of u 33.6 97 0.0021 25.6 5.2 29 137-165 107-135 (193)
110 PF04971 Lysis_S: Lysis protei 33.1 35 0.00077 24.2 2.0 28 93-120 37-64 (68)
111 TIGR00267 conserved hypothetic 31.0 3E+02 0.0066 22.7 7.8 17 95-111 35-51 (169)
112 PF04547 Anoctamin: Calcium-ac 30.2 1E+02 0.0022 29.4 5.3 38 95-132 332-372 (452)
113 COG2832 Uncharacterized protei 28.3 2E+02 0.0043 22.7 5.6 48 131-186 69-117 (119)
114 TIGR02762 TraL_TIGR type IV co 22.1 1.7E+02 0.0038 21.8 4.2 32 116-151 7-38 (95)
115 PRK10484 putative transporter; 21.9 7.4E+02 0.016 24.0 14.0 14 101-114 350-363 (523)
116 COG1033 Predicted exporters of 21.7 2.7E+02 0.0058 28.8 6.7 18 96-113 260-277 (727)
117 smart00816 Amb_V_allergen Amb 21.4 49 0.0011 21.1 0.9 13 7-19 18-30 (45)
No 1
>PLN02878 homogentisate phytyltransferase
Probab=100.00 E-value=1.7e-35 Score=262.40 Aligned_cols=176 Identities=41% Similarity=0.760 Sum_probs=157.5
Q ss_pred HHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCccCCCCCcccCCCCChHHHHHHHHHHHHHHHHHHH
Q 025718 72 SLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNKPYLPLACGDFSMGEGLAITIASPLMAVAMGI 151 (249)
Q Consensus 72 ~~lA~~~~~~~~~~~l~~~l~~~l~~~l~~~a~~iiND~~D~e~D~inkp~RPi~sG~IS~~~A~~~~~~l~~~gl~l~~ 151 (249)
+++|.+...+.++..+...+.+++++++++.+...+|||+|+|+||+|||+||||||++|+++|+.+...+.++|+.+++
T Consensus 7 ~l~a~~~~~~~~~~~~~~~l~~~~~~l~~niyivglNd~~D~EIDkINkP~rPIpSG~iS~~~a~~~~~~~~~lg~~la~ 86 (280)
T PLN02878 7 SLLAVESLSDFSPLFFTGLLEALVPALLMNIYIVGLNQLYDIEIDKVNKPYLPLASGEFSVATGVAIVTSFAIMSFGMGW 86 (280)
T ss_pred hHHHhhccccccHHHHHHHHHHHHHHHhhhhheechhhhhhhcccccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 44554444455555566777888999999999999999999999999999999999999999999999999999999999
Q ss_pred HhchHHHHHHHHHHHHHhhHhcCcCCcccccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHH
Q 025718 152 MLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPFFIHFQKIVLGNPVAFTKPVLFTAAYM 231 (249)
Q Consensus 152 ~l~~~~l~l~~l~~~~l~~~YS~~~P~p~~lKr~~~~~~l~v~~~~g~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~ 231 (249)
.+|++++..+++.+++++++||.|+| |+++||+++++.+|+..+++..+++|+|.|+++.++|++..++.++++.++|+
T Consensus 87 ~~g~~~l~~al~~~~~lg~~YS~~lp-~lr~k~~~~~aa~~i~~vr~~~v~l~~~~h~~~~~~g~~~~~~~~~~~~~~f~ 165 (280)
T PLN02878 87 IVGSWPLFWALFVSFVLGTAYSINLP-LLRWKRSAVAAASCILAVRAVVVQLAFFLHMQTHVLGRPAVFTRPLIFATAFM 165 (280)
T ss_pred HHChHHHHHHHHHHHHHHHHHHccCC-CcccHHHHHHHHHHHHHHHHHHhhhhHHHhHHHHHhCCccccchhHHHHHHHH
Confidence 99988888877777789999998889 99999999999999999999999999999999999998777777888888899
Q ss_pred HHHHHHHHHhhCCCCcc
Q 025718 232 VIWNAAIAFVKVTNSEI 248 (249)
Q Consensus 232 ~l~~~~~~i~kdi~Di~ 248 (249)
++|+.++|++||+||+|
T Consensus 166 ~~f~~~i~i~KDi~Die 182 (280)
T PLN02878 166 CFFSVVIALFKDIPDVE 182 (280)
T ss_pred HHHHHHHHHHhhCcCch
Confidence 99999999999999998
No 2
>PRK12887 ubiA tocopherol phytyltransferase; Reviewed
Probab=100.00 E-value=5.7e-34 Score=258.47 Aligned_cols=205 Identities=27% Similarity=0.463 Sum_probs=163.7
Q ss_pred hHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHhcCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCcc
Q 025718 40 SFMQVLNKKCDAFYRLTRPYSCVSIIAALLSVSLLPLQSPAD-FTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKV 118 (249)
Q Consensus 40 ~~~~~~~~~l~~~~~l~Rp~~~~~~~l~~~~g~~lA~~~~~~-~~~~~l~~~l~~~l~~~l~~~a~~iiND~~D~e~D~i 118 (249)
+.+++..+.+++++|++|||+..++.++++.+.+++.....+ .+...+...+.+++....++.+.+.+|||+|+|+||+
T Consensus 4 ~~~~~~~~~l~~~~~l~Rp~t~igt~l~~~~~~l~a~~~~~~~~~~~~~~~~l~~~~~~~~~nv~i~~iNd~~D~~iD~i 83 (308)
T PRK12887 4 NPLQPMTSWLYALWKFSRPHTIIGTSLSVLGLYLIAIAASSNTIALANLGLLLGAWIACLCGNVYIVGLNQLTDIEIDRI 83 (308)
T ss_pred chhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhc
Confidence 466777788999999999999999999998887766322111 1111222222333333444444444999999999999
Q ss_pred CCCCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhHhcCcCCcccccccCchhHHHHHHHHHH
Q 025718 119 NKPYLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNG 198 (249)
Q Consensus 119 nkp~RPi~sG~IS~~~A~~~~~~l~~~gl~l~~~l~~~~l~l~~l~~~~l~~~YS~~~P~p~~lKr~~~~~~l~v~~~~g 198 (249)
|||+||++||++|+++++.+..++.++|+.+++.+|++.+.+++ .+.+++++||. | |+++||++++++++++.++|
T Consensus 84 nkp~rPiasG~ls~~~a~~~~~~~~~lal~la~~~~~~~~~~~~-~~~~lg~~Ys~--p-P~rlKr~~~~~~~~i~~~~g 159 (308)
T PRK12887 84 NKPHLPLAAGEFSRRQGQRIVIITGILALILAALLGPWLLITVG-ISLLIGTAYSL--P-PIRLKRFPLLAALCIFTVRG 159 (308)
T ss_pred CCCCCCcCCcccCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHcC--C-chhhcccchhHHHHHHHHHH
Confidence 99999999999999999999999999999999988887766665 45589999999 8 99999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhhCCCCccC
Q 025718 199 LLLLFPFFIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEIE 249 (249)
Q Consensus 199 ~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~i~kdi~Di~~ 249 (249)
.++.+|++++.+. ..+++..++...++.++++++++++++++||++|+|+
T Consensus 160 ~i~~~g~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~di~D~eg 209 (308)
T PRK12887 160 VIVNLGLFLHFQW-LLGGSVLIPPTVWLLTLFVLVFTFAIAIFKDIPDMEG 209 (308)
T ss_pred HHHHHHHHHHHHH-HHhccccCcHHHHHHHHHHHHHHHHHHHHHhccchhh
Confidence 9999999887544 3344445667777888899999999999999999995
No 3
>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed
Probab=99.96 E-value=8.2e-29 Score=221.80 Aligned_cols=180 Identities=19% Similarity=0.273 Sum_probs=145.7
Q ss_pred HHHHHHhhhcchhhHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCccCCCCCcccC
Q 025718 48 KCDAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNKPYLPLAC 127 (249)
Q Consensus 48 ~l~~~~~l~Rp~~~~~~~l~~~~g~~lA~~~~~~~~~~~l~~~l~~~l~~~l~~~a~~iiND~~D~e~D~inkp~RPi~s 127 (249)
++++|+|++||+++..++++++.|.+++.+. ..++. ..+..+++++++++++|++|||+|+|+||+|+|+||+|+
T Consensus 2 ~~~~~~~l~Rp~~~~~~~~~~~~g~~la~~~--~~~~~---~~~l~~l~~~l~~~~~~~iNd~~D~~iD~~~~~~Rpl~s 76 (279)
T PRK09573 2 SIKAYFELIRPKNCIGASIGAIIGYLIASNF--KIDLK---GIILAALVVFLVCAGGNVINDIYDIEIDKINKPERPIPS 76 (279)
T ss_pred CHHHHHHHHhHhHHHHHHHHHHHHHHHHccC--CcchH---HHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcCC
Confidence 3689999999999999999999999888532 12222 233467888999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhHhcCcCCcccccccCchhHHHHHHHHHHHHHHHHHHH
Q 025718 128 GDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPFFI 207 (249)
Q Consensus 128 G~IS~~~A~~~~~~l~~~gl~l~~~l~~~~l~l~~l~~~~l~~~YS~~~P~p~~lKr~~~~~~l~v~~~~g~~~~~g~~~ 207 (249)
|++|+++|+.++.++.++|+.+++++|+.+..++++. .+..+.||. ++||++.+||+.++...|..+..|...
T Consensus 77 G~is~~~a~~~~~~l~~~~~~l~~~l~~~~~~l~~~~-~~~~~~Ys~------~lKr~~~~~~~~vg~~~G~~~~~g~~~ 149 (279)
T PRK09573 77 GRISLKEAKIFSITLFIVGLILSIFINIYAFLIALLN-SILLYLYAK------DLKKTGLIGNLIVAYLTGLSFIFGGLA 149 (279)
T ss_pred CccCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHH------HHhcCCcHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988898888877654 356889976 799999999999999988776555532
Q ss_pred HHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhhCCCCccC
Q 025718 208 HFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEIE 249 (249)
Q Consensus 208 ~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~i~kdi~Di~~ 249 (249)
. ++ . ...++...+.+++..+++++||++|+|+
T Consensus 150 ~------~~--~--~~~~~l~~~~f~~~~~~~~~~~~~D~~~ 181 (279)
T PRK09573 150 V------FN--V--LRIIILFLCAFFSTWSREIVKDIEDIEG 181 (279)
T ss_pred H------cc--c--hHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 2 11 1 1222334456677889999999999985
No 4
>PLN00012 chlorophyll synthetase; Provisional
Probab=99.96 E-value=1.6e-28 Score=227.76 Aligned_cols=191 Identities=18% Similarity=0.192 Sum_probs=142.0
Q ss_pred HHHHHHHHHhhhcchhhHHHHHHHHHHHHhcCCCCCCCCHH-HHHHHHHHHHHHHHHHHHHHhhhhccccccCccCCCCC
Q 025718 45 LNKKCDAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPK-LIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNKPYL 123 (249)
Q Consensus 45 ~~~~l~~~~~l~Rp~~~~~~~l~~~~g~~lA~~~~~~~~~~-~l~~~l~~~l~~~l~~~a~~iiND~~D~e~D~inkp~R 123 (249)
..+++|+|++++||+++..++++++.|..... . .++... .....+..++++.++++++|++|||+|+|+|++|+|+|
T Consensus 81 ~~~~~k~~l~L~RP~t~~~~~~~v~~G~~~~g-~-~~~~~~~~~~~ll~~ll~~~L~~~~an~iNDy~D~~iD~~~~~~R 158 (375)
T PLN00012 81 ETDIWKIRLQLTKPVTWPPLVWGVLCGAAASG-N-FHWTLEDVAKSIVCMLMSGPFLTGYTQTINDWYDREIDAINEPYR 158 (375)
T ss_pred chHHHHHHHHHhCHHHHHHHHHHHHHHHHHcC-C-CCchhhhHHHHHHHHHHHHHHHHHHHHHHHCeecHhhhccCCCCC
Confidence 45778999999999999999999999988532 1 122211 11122445677888999999999999999999999999
Q ss_pred cccCCCCChHHHHHHHHHHHHHHHHHHHHh-------chHHHHHHHHHHHHHhhHhcCcCCcccccccCchhHHHHHHHH
Q 025718 124 PLACGDFSMGEGLAITIASPLMAVAMGIML-------RSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISM 196 (249)
Q Consensus 124 Pi~sG~IS~~~A~~~~~~l~~~gl~l~~~l-------~~~~l~l~~l~~~~l~~~YS~~~P~p~~lKr~~~~~~l~v~~~ 196 (249)
|+++|++|+++++.++.++..+++.+++++ |++.+.++++ +++..++||. | |+++||++++|++.++..
T Consensus 159 pi~sG~Is~~~al~~~~~l~~~~l~l~~~L~~~~~~~~~~~~~l~l~-gi~l~~~YS~--p-Pl~lKr~~~~G~v~lG~~ 234 (375)
T PLN00012 159 PIPSGAISENEVITQIWVLLLGGLGLAYTLDVWAGHDFPIVFYLALG-GSLLSYIYSA--P-PLKLKQNGWIGNYALGAS 234 (375)
T ss_pred CcCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHH-HHHHhhhhcC--C-chhhhHhccHhHHHHHHH
Confidence 999999999999998888777777766554 3344445543 4467899999 8 999999999999876666
Q ss_pred HHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhhCCCCccC
Q 025718 197 NGLLLLFPFFIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEIE 249 (249)
Q Consensus 197 ~g~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~i~kdi~Di~~ 249 (249)
.+.+..++.+ ...| . ++...++...+.+++.++++++||++|+|+
T Consensus 235 ~~~lp~~~g~-----a~~g-~--~s~~~illal~~~l~~lai~ivnd~~Die~ 279 (375)
T PLN00012 235 YISLPWWAGQ-----ALFG-T--LTPDVVVLTLLYSIAGLGIAIVNDFKSIEG 279 (375)
T ss_pred HHHHHHHHHH-----HHcC-C--CCHHHHHHHHHHHHHHHHHHHHhhhcchhh
Confidence 5533222221 1222 2 334455566778889999999999999985
No 5
>PRK12882 ubiA prenyltransferase; Reviewed
Probab=99.96 E-value=5.2e-28 Score=216.23 Aligned_cols=182 Identities=21% Similarity=0.253 Sum_probs=143.5
Q ss_pred HHHHHHhhhcchhhHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCccCCCCCcccC
Q 025718 48 KCDAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNKPYLPLAC 127 (249)
Q Consensus 48 ~l~~~~~l~Rp~~~~~~~l~~~~g~~lA~~~~~~~~~~~l~~~l~~~l~~~l~~~a~~iiND~~D~e~D~inkp~RPi~s 127 (249)
++|+|+|++||++...++++.+.|++++.+. .+.... .++.+++.+++++++|++||++|+|+||+|+|+||+|+
T Consensus 3 ~~~~~~~l~Rp~~~~~~~~~~~~g~~~a~~~---~~~~~~--~~l~~l~~~l~~~~~~~~Nd~~D~~iD~~~~~~Rpl~~ 77 (276)
T PRK12882 3 TVRGYLELTRPVNAVVAGVAAFIGAFIAGGI---LSSPSL--TGLAFAAVFLATGAGNAINDYFDREIDRINRPDRPIPS 77 (276)
T ss_pred CHHHHHHHHhhhHHHHHHHHHHHHHHHhccc---cchHHH--HHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCcCC
Confidence 4789999999999999999999999998542 121111 23467888999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhHhcCcCCcccccccCchhHHHHHHHHHHHHHHHHHHH
Q 025718 128 GDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPFFI 207 (249)
Q Consensus 128 G~IS~~~A~~~~~~l~~~gl~l~~~l~~~~l~l~~l~~~~l~~~YS~~~P~p~~lKr~~~~~~l~v~~~~g~~~~~g~~~ 207 (249)
|++|++||+.++.++.++|+.+++++|+.+..++.+. ++..+.||. ++||++.+||+.++...|..+.+|...
T Consensus 78 G~is~~~a~~~~~~l~~~g~~~~~~l~~~~~~~~~~~-~~~~~~Yt~------~lK~~~~~g~~~vg~~~g~~~~~g~~~ 150 (276)
T PRK12882 78 GAVSPRGALAFSILLFAAGVALAFLLPPLCLAIALFN-SLLLVLYAE------TLKGTPGLGNASVAYLTGSTFLFGGAA 150 (276)
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHH------HHhcccchhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988898887776644 356789987 899999999998887777554444422
Q ss_pred HHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhhCCCCccC
Q 025718 208 HFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEIE 249 (249)
Q Consensus 208 ~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~i~kdi~Di~~ 249 (249)
.+... . ...+.+..+.+++..++|++||++|+|+
T Consensus 151 ------~~~~~-~-~~~~~l~~~~fl~~~~~~~~~~~~D~e~ 184 (276)
T PRK12882 151 ------VGTEG-L-LALLVLFALAALATLAREIIKDVEDIEG 184 (276)
T ss_pred ------hcccc-h-HHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 22111 1 1223334455677889999999999985
No 6
>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase. This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.
Probab=99.96 E-value=2.8e-28 Score=218.73 Aligned_cols=186 Identities=15% Similarity=0.135 Sum_probs=143.1
Q ss_pred HHHHhhhcchhhHHHHHHHHHHHHhcCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCccCCCCCcccCC
Q 025718 50 DAFYRLTRPYSCVSIIAALLSVSLLPLQSPAD-FTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNKPYLPLACG 128 (249)
Q Consensus 50 ~~~~~l~Rp~~~~~~~l~~~~g~~lA~~~~~~-~~~~~l~~~l~~~l~~~l~~~a~~iiND~~D~e~D~inkp~RPi~sG 128 (249)
|+|++++||+++...+.+++.|..++.....+ +++. ..++.++++..+.++++|++|||+|+|+|++|+|+||+++|
T Consensus 1 ~~~~~l~rp~t~~~~~~~~~~G~~~a~~~~~~~~~~~--~~ll~~~~~~~l~~~~~n~~Nd~~D~~~D~~~~~~Rpi~~G 78 (283)
T TIGR01476 1 RAHIELMKPVTWIPPIWACFCGALASGYERGFPEHWW--LMLLGMLMAGPLGTGFSQSINDYFDRDVDAINEPQRPIPSG 78 (283)
T ss_pred CceeEecCCceehhHHHHHHHHHHhccCCCCcchhHH--HHHHHHHHHHHHHHHHHHHHHhHhhhCcccCCCCCCCCCCC
Confidence 46889999999999999999999887421121 2222 12233567888999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHhchHH-HHHHHHHHHHHhhHhcCcCCcccccccCchhHHHHHHHHHHHHHHHHHHH
Q 025718 129 DFSMGEGLAITIASPLMAVAMGIMLRSPP-LVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPFFI 207 (249)
Q Consensus 129 ~IS~~~A~~~~~~l~~~gl~l~~~l~~~~-l~l~~l~~~~l~~~YS~~~P~p~~lKr~~~~~~l~v~~~~g~~~~~g~~~ 207 (249)
++|+++++.++.++..+++++++.++.+. ..+++ .+++.+++||. | |+++||++.+|++.++..++.....+.+.
T Consensus 79 ~is~~~a~~~~~~~~~~~~~l~~~l~~~~~~~l~~-~~~~~~~~Ys~--~-p~~lk~~~~~g~~~vg~~~~~~~~~~~~~ 154 (283)
T TIGR01476 79 IISLREVRWNWLVLTVAGLLVALVLGNWLIVLFTV-VGIVLAVIYSM--P-PIKLKRNGWLGPPAVGLSYEGLPWMAGHA 154 (283)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhheecC--c-hhhhccCCCccHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988887766 44443 44577899999 8 99999999999988776655332222221
Q ss_pred HHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhhCCCCccC
Q 025718 208 HFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEIE 249 (249)
Q Consensus 208 ~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~i~kdi~Di~~ 249 (249)
..+ + ++...++.....+++..+++.+||++|+|+
T Consensus 155 -----~~~-~--~~~~~~~~~~~~~l~~~~i~~~nd~~D~~~ 188 (283)
T TIGR01476 155 -----IFA-P--LTWQSVVVALIYSLGAHGIMTLNDFKSVEG 188 (283)
T ss_pred -----HhC-C--CCHHHHHHHHHHHHHHHHHHHHHhccchhh
Confidence 112 2 334445556677788999999999999986
No 7
>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed
Probab=99.96 E-value=6.4e-28 Score=219.54 Aligned_cols=192 Identities=16% Similarity=0.171 Sum_probs=147.9
Q ss_pred HHHHHHHHhhhcchhhHHHHHHHHHHHHhcCCCCCCCCHHHHH-HHHHHHHHHHHHHHHHHhhhhccccccCccCCCCCc
Q 025718 46 NKKCDAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLII-EAFKCMVPAIMMNNYANAINQLADVHIDKVNKPYLP 124 (249)
Q Consensus 46 ~~~l~~~~~l~Rp~~~~~~~l~~~~g~~lA~~~~~~~~~~~l~-~~l~~~l~~~l~~~a~~iiND~~D~e~D~inkp~RP 124 (249)
++++++|++++||+++..++++++.|...+.. .++...... ..+..++++.++++++|++|||+|+|+||+|+|+||
T Consensus 24 ~~~~~~~~~l~RP~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~l~~~l~~~l~~~~~~~~Nd~~D~~~D~~~~~~Rp 101 (314)
T PRK07566 24 TSIWKARLQLMKPITWFPPMWAFLCGAVSSGA--FGWTLENVLKLLAGMLLAGPLLCGTSQTLNDYFDREVDAINEPYRP 101 (314)
T ss_pred chHHHHHHHHhCCcchHHHHHHHHHHHHHcCC--CCcchhHHHHHHHHHHHHHHHHHHHHHHHhhhhccCccccCCCCCC
Confidence 46789999999999999999888878776532 122221111 123345677889999999999999999999999999
Q ss_pred ccCCCCChHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhHhcCcCCcccccccCchhHHHHHHHHHHHHHHHH
Q 025718 125 LACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFP 204 (249)
Q Consensus 125 i~sG~IS~~~A~~~~~~l~~~gl~l~~~l~~~~l~l~~l~~~~l~~~YS~~~P~p~~lKr~~~~~~l~v~~~~g~~~~~g 204 (249)
+++|++|+++++.++.++.++++++++.+|++...++++ +++..++||. | |+++||++.+||+.++..+|....++
T Consensus 102 l~sG~is~~~a~~~~~~l~~~~~~l~~~l~~~~~~l~l~-~~~~~~~Yt~--g-P~~lK~~~~~g~i~vg~~~g~~~~~~ 177 (314)
T PRK07566 102 IPSGAISLRWVLYLIAVLTVLGLAVAYLLGPWVFLAALL-GLFLAWIYSA--P-PLRLKQNGWLGNYAVGLSYEGLPWWA 177 (314)
T ss_pred CCCceeCHHHHHHHHHHHHHHHHHHHHHHChHHHHHHHH-HHHHHHHhcC--C-ccccccccchhhHHHHHHHHHHHHHH
Confidence 999999999999999999999999988888877777654 4466899998 7 89999999999998887776543333
Q ss_pred HHHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhhCCCCccC
Q 025718 205 FFIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEIE 249 (249)
Q Consensus 205 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~i~kdi~Di~~ 249 (249)
.+.. .+. ..++...++.....+++..+++.+||++|+|+
T Consensus 178 g~~~-----~~~-~~~~~~~~l~~~~~~l~~~~~~~~~d~~D~e~ 216 (314)
T PRK07566 178 GAAA-----FGA-GLPSWPIVILALLYSLGAHGIMTLNDFKSVEG 216 (314)
T ss_pred HHHH-----hcc-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Confidence 3222 221 12334455566677788899999999999986
No 8
>PRK12884 ubiA prenyltransferase; Reviewed
Probab=99.96 E-value=2.4e-27 Score=212.00 Aligned_cols=181 Identities=19% Similarity=0.313 Sum_probs=146.5
Q ss_pred HHHHHHHhhhcchhhHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCccCCCCCccc
Q 025718 47 KKCDAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNKPYLPLA 126 (249)
Q Consensus 47 ~~l~~~~~l~Rp~~~~~~~l~~~~g~~lA~~~~~~~~~~~l~~~l~~~l~~~l~~~a~~iiND~~D~e~D~inkp~RPi~ 126 (249)
+++++|+|++||+++....++.+.|.++|.+. .+.. ..+..+++.+++++++|++||++|+|+|++|||+||++
T Consensus 2 ~~l~~~~~l~R~~~~~~~~~~~~~g~~la~~~---~~~~---~~~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~r~~Rpl~ 75 (279)
T PRK12884 2 TKMKAYLELLRPEHGLMAGIAVVLGAIIALGG---LPLD---EALLGFLTAFFASGSANALNDYFDYEVDRINRPDRPIP 75 (279)
T ss_pred hHHHHHHHHhhhhHHHHHHHHHHHHHHHHCCC---CchH---HHHHHHHHHHHHHHHHHHHHhhhhHhhhhccCCCCCCC
Confidence 57899999999999999999999999888542 2221 23345688899999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhHhcCcCCcccccccCchhHHHHHHHHHHHHHHHHHH
Q 025718 127 CGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPFF 206 (249)
Q Consensus 127 sG~IS~~~A~~~~~~l~~~gl~l~~~l~~~~l~l~~l~~~~l~~~YS~~~P~p~~lKr~~~~~~l~v~~~~g~~~~~g~~ 206 (249)
+|++|+++++.++.++.+++++++..+|+..+.++++ ++++++.||. ++||++.++++.++...|..+..|..
T Consensus 76 ~G~is~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~Ys~------~lK~~~~~~~~~~~~~~~~~~~~g~~ 148 (279)
T PRK12884 76 SGRISRREALLLAILLFILGLIAAYLISPLAFLVVIL-VSVLGILYNW------KLKEYGLIGNLYVAFLTGMTFIFGGI 148 (279)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHH------hhccccchhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988888887777654 4477899977 79999999999888887755544443
Q ss_pred HHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhhCCCCccC
Q 025718 207 IHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEIE 249 (249)
Q Consensus 207 ~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~i~kdi~Di~~ 249 (249)
. .+... ...++.....+++..+.+++||++|+|+
T Consensus 149 ~------~~~~~---~~~~~l~~~~~~~~~~~~~~~~~~D~e~ 182 (279)
T PRK12884 149 A------VGELN---EAVILLAAMAFLMTLGREIMKDIEDVEG 182 (279)
T ss_pred H------hCCCc---hHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 2 22221 1344455677788889999999999996
No 9
>PRK12392 bacteriochlorophyll c synthase; Provisional
Probab=99.96 E-value=4.6e-27 Score=215.03 Aligned_cols=192 Identities=18% Similarity=0.247 Sum_probs=136.3
Q ss_pred HHHHHHHHHhhhcchhhHHHHHHHHHHHHhcCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCccCCCCC
Q 025718 45 LNKKCDAFYRLTRPYSCVSIIAALLSVSLLPLQSP-ADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNKPYL 123 (249)
Q Consensus 45 ~~~~l~~~~~l~Rp~~~~~~~l~~~~g~~lA~~~~-~~~~~~~l~~~l~~~l~~~l~~~a~~iiND~~D~e~D~inkp~R 123 (249)
...++|++++++||+++. ..++.+.|..+|.+.. +..... .+.....++...+.++++|++|||+|+|+|++|+|+|
T Consensus 8 ~~~~~k~~l~L~kP~t~l-~~~p~~~g~~lA~g~~~~~~~~~-~l~l~~~~~~~~L~~~a~~~iND~~D~~~D~~n~rtR 85 (331)
T PRK12392 8 FVDKIRAHLELLDPVTWI-SVFPCLAGGVMASGAMQPTLHDY-LLLLALFLMYGPLGTGFSQSVNDYFDLELDRVNEPTR 85 (331)
T ss_pred hhHHHHHHHHHHCHHHHH-HHHHHHHHHHHHcCCCCCChhHH-HHHHHHHHHHHHHHHHHHhHHhcceeecccccCCCCC
Confidence 346789999999999988 4555566667775321 111111 1111122334455667889999999999999999999
Q ss_pred cccCCCCChHHHHHHHHHHHHHHHHHHHHhch-------HHHHHHHHHHHHHhhHhcCcCCcccccccCchhHHHHHHHH
Q 025718 124 PLACGDFSMGEGLAITIASPLMAVAMGIMLRS-------PPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISM 196 (249)
Q Consensus 124 Pi~sG~IS~~~A~~~~~~l~~~gl~l~~~l~~-------~~l~l~~l~~~~l~~~YS~~~P~p~~lKr~~~~~~l~v~~~ 196 (249)
|+|+|++|+++++.+..++.+++++++.+++. +......+.+++++++||. | |+++||+++.++..++..
T Consensus 86 pl~~G~is~~~al~~~~~l~~la~~lg~~L~~~~~~~~~~~il~~~~~~l~l~~~YS~--~-P~~lKr~~~~g~~~vGl~ 162 (331)
T PRK12392 86 PIPSGRLSEKEALWNSIIVLLLAIGLGVWLGLHIGGERGMVIISSILAGLFVAYIYSA--P-PLKLKKNILTSAPAVGFS 162 (331)
T ss_pred CCCcCCcCHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHhhhhcC--C-chhhhccchhHHHHHHHH
Confidence 99999999999999999999999888776543 2222322344578899999 8 999999999899877766
Q ss_pred HHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhhCCCCccC
Q 025718 197 NGLLLLFPFFIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEIE 249 (249)
Q Consensus 197 ~g~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~i~kdi~Di~~ 249 (249)
++.....+.. ...+ . ++...++..+..++++.+++++||++|+|+
T Consensus 163 ~~~~~~~~~~-----a~~g-~--~~~~~~~l~~~~~l~~~~~~~i~d~~D~eg 207 (331)
T PRK12392 163 YGFITFLSAN-----ALFS-D--IRPEVVWLAGLNFFMAIALIIMNDFKSVEG 207 (331)
T ss_pred HHHHHHHHHH-----HHhc-C--CCHHHHHHHHHHHHHHHHHHHHHcccchhh
Confidence 6644332221 1222 2 334445566678889999999999999985
No 10
>TIGR02056 ChlG chlorophyll synthase, ChlG. This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).
Probab=99.96 E-value=2.4e-27 Score=215.12 Aligned_cols=192 Identities=17% Similarity=0.231 Sum_probs=144.6
Q ss_pred HHHHHHHHHHhhhcchhhHHHHHHHHHHHHhcCCCCCCCCHH-HHHHHHHHHHHHHHHHHHHHhhhhccccccCccCCCC
Q 025718 44 VLNKKCDAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPK-LIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNKPY 122 (249)
Q Consensus 44 ~~~~~l~~~~~l~Rp~~~~~~~l~~~~g~~lA~~~~~~~~~~-~l~~~l~~~l~~~l~~~a~~iiND~~D~e~D~inkp~ 122 (249)
...+++|+|++++||+++..++++++.|...+.. .++... .....+..++++.++++++|++|||+|+|.|++|+|+
T Consensus 11 ~~~~~~~~~~~l~RP~~~~~~~~~~~~G~~~~~~--~~~~~~~~~~~ll~~ll~~~l~~~~~n~~NDy~D~d~D~~~~~~ 88 (306)
T TIGR02056 11 GETNIWKIRLQLMKPITWIPLIWGVVCGAAASGN--FHWSLEDVAKAALCMLLSGPCLTGYTQTINDFYDRDIDAINEPY 88 (306)
T ss_pred cchhHHHHHHHHcChHhhHHHHHHHHHHHHHcCC--CCcchhhHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhccCCCC
Confidence 3456788999999999999999998889876421 112211 1111233456778999999999999999999999999
Q ss_pred CcccCCCCChHHHHHHHHHHHHHHHHHHHHhc-------hHHHHHHHHHHHHHhhHhcCcCCcccccccCchhHHHHHHH
Q 025718 123 LPLACGDFSMGEGLAITIASPLMAVAMGIMLR-------SPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIIS 195 (249)
Q Consensus 123 RPi~sG~IS~~~A~~~~~~l~~~gl~l~~~l~-------~~~l~l~~l~~~~l~~~YS~~~P~p~~lKr~~~~~~l~v~~ 195 (249)
||+++|++|+++++.++..+.++++.++..+. ++.+.+++ .+++.+++||. | |+++||++.+|++.++.
T Consensus 89 Rpi~~G~is~~~a~~~~~~l~~~~~~lg~~l~~~~~~~~~~~~~l~~-~~~~~~~~Yt~--g-P~~lk~~g~~G~i~vg~ 164 (306)
T TIGR02056 89 RPIPSGAISEPEVITQIVLLFIAGIAIAFILDLWAGHEFPNVFVLAL-FGSFIAFIYSA--P-PLKLKQNGWLGNFALGA 164 (306)
T ss_pred CCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHH-HHHHHHHHHcC--C-hhhhhhcccHHHHHHHH
Confidence 99999999999999999999999888876553 34455554 34577999999 8 99999999999987766
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhhCCCCccC
Q 025718 196 MNGLLLLFPFFIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEIE 249 (249)
Q Consensus 196 ~~g~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~i~kdi~Di~~ 249 (249)
..+....++.+. ..| . ++...++.....++++.+++++||++|+|+
T Consensus 165 ~~~~~~~~~~~a-----~~g-~--~~~~~~l~~~~~~l~~~~i~~~n~~~D~e~ 210 (306)
T TIGR02056 165 SYIALPWWAGHA-----LFG-E--LNPDIAVLTLIYSIAGLGIAIVNDFKSVEG 210 (306)
T ss_pred HHHHHHHHHHHH-----HhC-C--CcHHHHHHHHHHHHHHHHHHHHHHccChHH
Confidence 655443333221 122 2 334445666778889999999999999986
No 11
>PRK13106 ubiA prenyltransferase; Reviewed
Probab=99.95 E-value=2.6e-27 Score=214.16 Aligned_cols=191 Identities=15% Similarity=0.176 Sum_probs=144.7
Q ss_pred HHHHHHHHHHhhhcchhhHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCccC--CC
Q 025718 44 VLNKKCDAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVN--KP 121 (249)
Q Consensus 44 ~~~~~l~~~~~l~Rp~~~~~~~l~~~~g~~lA~~~~~~~~~~~l~~~l~~~l~~~l~~~a~~iiND~~D~e~D~in--kp 121 (249)
...+++++|+|++||++......+.+.|+++|.++.. ++.. .++.+++.+++++++|++||++|+|+|++| +|
T Consensus 10 ~~~~~l~~yl~L~R~~~~~~~l~~~~~g~~la~~~~~--~~~~---l~l~~lg~~l~~~a~~~~Nd~~D~diD~~~~RT~ 84 (300)
T PRK13106 10 NTRSKFYIILRFLRIEQTFFSLPMAYLGAFVAIKGIP--PIST---LILIFLALFFLRTAGMTNDNLADLEIDAKNPRTK 84 (300)
T ss_pred hhHHHHHHHHHHHccccHHHHHHHHHHHHHHHcCCCC--CHHH---HHHHHHHHHHHHHHHHHHHhhHHhccccCCCccC
Confidence 3556899999999999999999988899999864322 3222 234568889999999999999999999998 57
Q ss_pred CCcccCCCCChHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhHhcCcCCcccccccCchhHHHHHHHHHHHHH
Q 025718 122 YLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLL 201 (249)
Q Consensus 122 ~RPi~sG~IS~~~A~~~~~~l~~~gl~l~~~l~~~~l~l~~l~~~~l~~~YS~~~P~p~~lKr~~~~~~l~v~~~~g~~~ 201 (249)
+||+|+|++|++||+.+..++.+.++.++..+|+.+..++.+.. ++...| | .+||++.++|+.++..+|+.+
T Consensus 85 ~RPl~sG~is~~~A~~~~~~~~~~~~~~~~~ln~~~~~l~~~~~-~~~~~Y----~---~~KR~t~~~~~~lg~~~~~~~ 156 (300)
T PRK13106 85 NRPLVTGAIKISEAKALITAGLILFFASAYLVNRWALLLSPIVA-LIAMSY----P---YMKRYTAFANYHLASIQGLAV 156 (300)
T ss_pred CCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-HHHHHH----h---HHhcCCcchHHHHHHHHHHHH
Confidence 99999999999999999888787787778888988888776544 556678 4 589999999999888887665
Q ss_pred HHHHHHHHHHHHhcCCc--cccHHHHHHHHHHHHHHHHHHHhhCCCCccC
Q 025718 202 LFPFFIHFQKIVLGNPV--AFTKPVLFTAAYMVIWNAAIAFVKVTNSEIE 249 (249)
Q Consensus 202 ~~g~~~~~~~~~~g~~~--~~~~~~~~~~~~~~l~~~~~~i~kdi~Di~~ 249 (249)
..|.... .+....+. ..+...+++.+...+++.+.+++|+.+|+|.
T Consensus 157 ~~G~~a~--~g~~~~~~~~~l~~~~~~l~~~~~lw~~~~d~iya~~D~e~ 204 (300)
T PRK13106 157 FSGAVAV--LGLYANSLIQVLLRVPWLFVIGTILWAAGFDLYNHIPDAEF 204 (300)
T ss_pred HHHHHHH--cCCcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHccchhh
Confidence 5555321 11111010 1112223344467788999999999999984
No 12
>PRK12895 ubiA prenyltransferase; Reviewed
Probab=99.95 E-value=4.7e-27 Score=211.02 Aligned_cols=183 Identities=15% Similarity=0.149 Sum_probs=143.0
Q ss_pred HHHHHHhhhcchhhHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCccC--CCCCcc
Q 025718 48 KCDAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVN--KPYLPL 125 (249)
Q Consensus 48 ~l~~~~~l~Rp~~~~~~~l~~~~g~~lA~~~~~~~~~~~l~~~l~~~l~~~l~~~a~~iiND~~D~e~D~in--kp~RPi 125 (249)
++|+|+|++||++....+..++.|.++|.++. .++.. .++.+++.+++++++|++||++|+|+||+| +|+||+
T Consensus 2 ~~~~~~el~k~~~t~~al~~a~~g~~lA~~~~--~~~~~---l~l~~~~~~~~rsag~~~Ndi~Dr~iD~~~~RT~~RPL 76 (286)
T PRK12895 2 NFRDIVDYIKLEHTVFDLPFILAGYVIAAGHY--IHPIK---ILLILIAAVSARTSAMSINRIEGLRYDMINPRKKDWAL 76 (286)
T ss_pred cHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCC--CCHHH---HHHHHHHHHHHHHHHHHHHhHHHhcccCCCCcCCCCCC
Confidence 47899999999999999998899999985421 22221 233456788999999999999999999998 689999
Q ss_pred cCCCCChHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhHhcCcCCcccccccCchhHHHHHHHHHHHHHHHHH
Q 025718 126 ACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPF 205 (249)
Q Consensus 126 ~sG~IS~~~A~~~~~~l~~~gl~l~~~l~~~~l~l~~l~~~~l~~~YS~~~P~p~~lKr~~~~~~l~v~~~~g~~~~~g~ 205 (249)
|+|++|++||+.+..++.++++.+++.+|+.++.++... ..+...| | ++||++.++|+.++...|..+..|+
T Consensus 77 psG~is~~~A~~~~~~~~~~~~~~~~~ln~l~~~l~~~~-~~l~~~y----p---~~KR~t~~~~~~lG~~~g~~~l~g~ 148 (286)
T PRK12895 77 VSGRIKMREAIAFTIIFIAIFEICTFLLNRLVFILSPIV-IFLFIID----P---FLKRYTAWRHIYMGSIIGLGVLAGY 148 (286)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-HHHHHHH----H---HHHhCccccHHHHHHHHHhHHHHHH
Confidence 999999999999999999999999888999988877643 3444555 5 8999999999877777664333333
Q ss_pred HHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhhCCCCccC
Q 025718 206 FIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEIE 249 (249)
Q Consensus 206 ~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~i~kdi~Di~~ 249 (249)
.+.++...+....+++.+...+|+.+.+++++.+|+|+
T Consensus 149 ------~Av~g~~~~~~~~~~l~~~~~~W~~g~D~iYa~qD~e~ 186 (286)
T PRK12895 149 ------LAVIPAFPYNLLIYIIFISSSLWIAGFDIIYVIPDIEY 186 (286)
T ss_pred ------HHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHhcchhh
Confidence 33444444333444555677899999999999999984
No 13
>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]
Probab=99.95 E-value=4.8e-27 Score=211.34 Aligned_cols=183 Identities=19% Similarity=0.247 Sum_probs=139.8
Q ss_pred HHHHHHHHHhhhcch---hhHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCccCCC
Q 025718 45 LNKKCDAFYRLTRPY---SCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNKP 121 (249)
Q Consensus 45 ~~~~l~~~~~l~Rp~---~~~~~~l~~~~g~~lA~~~~~~~~~~~l~~~l~~~l~~~l~~~a~~iiND~~D~e~D~inkp 121 (249)
.+.+++.+.+++|++ .+.....+...+..++.. +++. +...+..+++++++++++|++||++|+|+||+|+|
T Consensus 6 ~~~~~~~~~~l~r~~r~i~~l~~~~~~~~~~~~~~~---~~~~--~~~~~l~~l~~~~~~~ag~~iND~~D~eiD~~n~r 80 (289)
T COG0382 6 LPNKLKALLKLLRLDRPIFNLLLLLPALLGLLLAAS---GLPS--LKLLLLAFLAFFLARSAGYVINDLADREIDRINPR 80 (289)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHc---CCch--HHHHHHHHHHHHHHHHHhHHHHHHhhhhccCCCCC
Confidence 334445555555554 444445555566666542 2222 23345567889999999999999999999999977
Q ss_pred --CCcccCCCCChHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhHhcCcCCcccccccCchhHHHHHHHHHHH
Q 025718 122 --YLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGL 199 (249)
Q Consensus 122 --~RPi~sG~IS~~~A~~~~~~l~~~gl~l~~~l~~~~l~l~~l~~~~l~~~YS~~~P~p~~lKr~~~~~~l~v~~~~g~ 199 (249)
+||+|||++|+++|+.+..++.++++++++.+|+.++.+.+. +.++.+.| | ++||++.+++++++..++.
T Consensus 81 t~~RPl~sG~vS~~~a~~~~~~~~~~~~~~a~~l~~~~~~l~~~-~~~l~~~Y----~---~~Kr~~~~~~~~lg~~~~~ 152 (289)
T COG0382 81 TKNRPLPSGRVSVKEALLLAILLLLLGLALALLLNPLAFLLSLA-ALVLALAY----P---FLKRFTFLPQLVLGLAFGL 152 (289)
T ss_pred ccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHH----H---HhhcCCchHHHHHHHHHHH
Confidence 999999999999999999999999999999999988777654 45788888 5 8999999999998888886
Q ss_pred HHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhhCCCCcc
Q 025718 200 LLLFPFFIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEI 248 (249)
Q Consensus 200 ~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~i~kdi~Di~ 248 (249)
.+..|.... ++. .+...+++.++..+++.+++++||++|+|
T Consensus 153 ~~~~g~~a~------~~~--~~~~~~~l~~~~~l~~~~~~~i~~~~D~e 193 (289)
T COG0382 153 GALAGAAAV------GGS--LPLLAWLLLLAAILWTLGYDIIYAIQDIE 193 (289)
T ss_pred HHHHHHHHH------hCc--cchHHHHHHHHHHHHHHHHHHHHhccCcc
Confidence 666555332 222 23455666778889999999999999998
No 14
>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed
Probab=99.95 E-value=4.2e-27 Score=210.47 Aligned_cols=180 Identities=19% Similarity=0.257 Sum_probs=140.9
Q ss_pred HHHHHHhhhcchhhHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCccCCCCCcccC
Q 025718 48 KCDAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNKPYLPLAC 127 (249)
Q Consensus 48 ~l~~~~~l~Rp~~~~~~~l~~~~g~~lA~~~~~~~~~~~l~~~l~~~l~~~l~~~a~~iiND~~D~e~D~inkp~RPi~s 127 (249)
.+|+|++++||+++..+.++.+.|.+++.+... ++.. .+..+++.++.++++|++|||+|+|+|++|||+||+|+
T Consensus 2 ~l~~~~~l~Rp~~~~~~~~~~~~G~~la~~~~~--~~~~---~~l~~~~~~~~~~a~~~~Nd~~D~~~D~~n~~~Rpl~s 76 (277)
T PRK12883 2 ELKAFIEITRPHNCILAGIVGILGSLVALGGIP--PIKT---LILIFLVVYLGCSGGNTINDYFDYEIDKINRPNRPLPR 76 (277)
T ss_pred CHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCC--cHHH---HHHHHHHHHHHHHHHhHHHhhhhHhccccCCCCCCCCC
Confidence 368899999999999999998899888754211 1221 22345677888999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhHhcCcCCcccccccCchhHHHHHHHHHHHHHHHHHHH
Q 025718 128 GDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPFFI 207 (249)
Q Consensus 128 G~IS~~~A~~~~~~l~~~gl~l~~~l~~~~l~l~~l~~~~l~~~YS~~~P~p~~lKr~~~~~~l~v~~~~g~~~~~g~~~ 207 (249)
|++|+++|+.++.++.++|+.+++.+|++++.++++. .++.++|+. ++||++.++|+.++.+.|.....|...
T Consensus 77 G~is~~~a~~~~~~l~~~g~~l~~~~~~~~~~~~~~~-~~~~~~Y~~------~~k~~~~lg~~~vg~~~g~~~~~g~~a 149 (277)
T PRK12883 77 GAMSRKAALYYSLLLFAVGLALAYLINIEAFLFALGA-YVLMFLYAW------KLKPLPFIGNVVVALLTGATPIYGAIA 149 (277)
T ss_pred CccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhh------cccCCcchhhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999888888887776644 477899987 899999999999998888665444421
Q ss_pred HHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhhCCCCccC
Q 025718 208 HFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEIE 249 (249)
Q Consensus 208 ~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~i~kdi~Di~~ 249 (249)
.+ ...+ ..++ ..+.+++..+++++||++|+|+
T Consensus 150 ------~~-~~~~--~~~~-~~~~fl~~~~~~~~~~~~D~e~ 181 (277)
T PRK12883 150 ------VG-RIGL--AGYL-AICAFLVNVAREIMKDIEDIEG 181 (277)
T ss_pred ------hc-cccH--HHHH-HHHHHHHHHHHHHHhhhhhhcc
Confidence 12 1222 2222 2345666779999999999985
No 15
>PRK12874 ubiA prenyltransferase; Reviewed
Probab=99.95 E-value=6.4e-27 Score=210.90 Aligned_cols=188 Identities=18% Similarity=0.201 Sum_probs=147.4
Q ss_pred HHHHHHHHHHHhhhcchhhHHHHHHHHHHHHhcCCC---CCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCccC
Q 025718 43 QVLNKKCDAFYRLTRPYSCVSIIAALLSVSLLPLQS---PADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVN 119 (249)
Q Consensus 43 ~~~~~~l~~~~~l~Rp~~~~~~~l~~~~g~~lA~~~---~~~~~~~~l~~~l~~~l~~~l~~~a~~iiND~~D~e~D~in 119 (249)
++.++++|+|+|++||++.+.+....+.|.++|... ....++. ..++.+++++++++++|++|||+|+|+|++|
T Consensus 2 ~~~~~~l~~y~~l~r~~~~~~~l~~a~~g~~la~~~~~~~~~~~~~---~~~l~~l~~~l~~~a~~~~Nd~~DrdiD~~~ 78 (291)
T PRK12874 2 KKFTKKLKDISELVVFKHSIFSLPFIFIAMIVASKQKNDTGWFGFK---LLILGILAAVSARNFAMAFNRLVDRDIDKDN 78 (291)
T ss_pred chHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhhhccCCCCCHH---HHHHHHHHHHHHHHHHHHHHhhhhhccccCC
Confidence 345678999999999999999999988898887521 1112332 2345678888999999999999999999998
Q ss_pred C--CCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhHhcCcCCcccccccCchhHHHHHHHHH
Q 025718 120 K--PYLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMN 197 (249)
Q Consensus 120 k--p~RPi~sG~IS~~~A~~~~~~l~~~gl~l~~~l~~~~l~l~~l~~~~l~~~YS~~~P~p~~lKr~~~~~~l~v~~~~ 197 (249)
+ |+||+|||++|++||+.++.++.++++.+++.+|+.+..+++. .+++...|+ .+||++.++++.++...
T Consensus 79 ~RT~~RPl~sG~is~~~a~~~~~~~~~~~~~~~~~~n~~~~~l~~~-~~~~~~~Y~-------~~KR~t~~~~~~~g~~~ 150 (291)
T PRK12874 79 PRTANRPSVDGRISVKSMVLFIVLNALIFIGVSYFINPLAFKLSFP-FLIVLGGYS-------YFKRFSSLAHLVLGLSL 150 (291)
T ss_pred CCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHh-------hhcccccccHHHHHHHH
Confidence 5 7999999999999999999999988888888889888877753 446788894 48999999999888887
Q ss_pred HHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhhCCCCccC
Q 025718 198 GLLLLFPFFIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEIE 249 (249)
Q Consensus 198 g~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~i~kdi~Di~~ 249 (249)
|+.+..|.. +.++... .+.+++.+..++++.+.+.+++++|+|+
T Consensus 151 ~~~~l~G~~------av~g~~~--~~~~~l~~~~~~w~~~~~~~~a~~D~~~ 194 (291)
T PRK12874 151 GLAPIAGVV------AVLGEIP--LWSVFLALGVMFWVAGFDLLYSLQDMEF 194 (291)
T ss_pred HHHHHHHHH------HHcCCCc--HHHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence 766555542 2233333 2333445567899999999999999984
No 16
>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase. A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.
Probab=99.95 E-value=1.8e-26 Score=206.90 Aligned_cols=183 Identities=18% Similarity=0.166 Sum_probs=141.9
Q ss_pred HHHHHHhhhcchhhHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCccC--CCCCcc
Q 025718 48 KCDAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVN--KPYLPL 125 (249)
Q Consensus 48 ~l~~~~~l~Rp~~~~~~~l~~~~g~~lA~~~~~~~~~~~l~~~l~~~l~~~l~~~a~~iiND~~D~e~D~in--kp~RPi 125 (249)
++|+|+|++||++........+.|.++|.++. .++. ..++.+++++++++++|++|||+|+|+|++| +|+||+
T Consensus 1 ~~~~~~~L~r~~~~~~~~~~~~~g~~la~~~~--~~~~---~~~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~~Rt~~RPl 75 (282)
T TIGR01475 1 KFKDILELIKFEHTVFALPFAYAGALLAAKGL--PGLK---TLILILIAAVSARTAAMAFNRIIDRAIDARNPRTKNRPL 75 (282)
T ss_pred CHHHHHHHHccccHHHHHHHHHHHHHHhcCCC--CCHH---HHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccCCCCC
Confidence 36899999999999999888888988885432 2332 2334578899999999999999999999998 789999
Q ss_pred cCCCCChHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhHhcCcCCcccccccCchhHHHHHHHHHHHHHHHHH
Q 025718 126 ACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPF 205 (249)
Q Consensus 126 ~sG~IS~~~A~~~~~~l~~~gl~l~~~l~~~~l~l~~l~~~~l~~~YS~~~P~p~~lKr~~~~~~l~v~~~~g~~~~~g~ 205 (249)
|+|++|+++|+.++.++.++++.++..+|..+..++.+.. +..++| | .+||++.++++.++...++.+..|.
T Consensus 76 ~sG~is~~~a~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~-~~~~~Y----~---~~Kr~~~~~~~~~g~~~~~~~~~g~ 147 (282)
T TIGR01475 76 VSGLISKKEARTMIILSLALFLSASYFLNPLAFILSPLVL-LVLIIY----P---YTKRFTFLCHYVLGSTYGLAPLAGW 147 (282)
T ss_pred CCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-HHHHHH----h---hHhccccccHHHHHHHHHHHHHHHH
Confidence 9999999999999999888888888888888877765443 557788 3 4899999999988877775554454
Q ss_pred HHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhhCCCCccC
Q 025718 206 FIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEIE 249 (249)
Q Consensus 206 ~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~i~kdi~Di~~ 249 (249)
.. .++........++.....++++.+.+++||++|+|+
T Consensus 148 ~a------~~g~~~~~~~~~ll~~~~~~w~~~~~~i~~~~D~e~ 185 (282)
T TIGR01475 148 VA------VIGTISFFLVAWLLGIGVGFWIAGFDLIYAIQDYEF 185 (282)
T ss_pred HH------HhCCccchHHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence 22 222322113334455667888899999999999984
No 17
>PRK12886 ubiA prenyltransferase; Reviewed
Probab=99.94 E-value=1.9e-25 Score=201.39 Aligned_cols=184 Identities=16% Similarity=0.114 Sum_probs=140.2
Q ss_pred HHHHHHHHHhhhcchhhHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCccCC--CC
Q 025718 45 LNKKCDAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNK--PY 122 (249)
Q Consensus 45 ~~~~l~~~~~l~Rp~~~~~~~l~~~~g~~lA~~~~~~~~~~~l~~~l~~~l~~~l~~~a~~iiND~~D~e~D~ink--p~ 122 (249)
..+++++|+|++||++......+.+.|.++|..+.+ +.. ..++..++.+++++++|++|||+|+|+|++|+ |+
T Consensus 4 ~~~~~~~y~~L~r~~~~~~~~~~~~~g~~lA~~~~~--~~~---~l~~~~l~~~l~~~a~~~~Nd~~D~~iD~~~~RT~~ 78 (291)
T PRK12886 4 LLTKLKVFLEMIKFSHTLFALPFAGIGAVLAALGLP--GAS---QLDWILMAMVGARTAAMGFNRLIDAEIDARNPRTAG 78 (291)
T ss_pred hHHHHHHHHHHhCccchHHHHHHHHHHHHHhccCCC--CHH---HHHHHHHHHHHHHHHHHHHHhHHhhccCCCCCCCCC
Confidence 346789999999999999999888899998854322 222 12345678899999999999999999999986 68
Q ss_pred CcccCCCCChHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhHhcCcCCcccccccCchhHHHHHHHHHHHHHH
Q 025718 123 LPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLL 202 (249)
Q Consensus 123 RPi~sG~IS~~~A~~~~~~l~~~gl~l~~~l~~~~l~l~~l~~~~l~~~YS~~~P~p~~lKr~~~~~~l~v~~~~g~~~~ 202 (249)
||+|+|++|++||+.+...+.+.++.+++.+|+.+..++++.. +....|+ .+||++.++++..+...++...
T Consensus 79 RPL~sG~is~~~A~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~-~~~~~Y~-------~~Kr~t~~~~~~~g~~~~~~~l 150 (291)
T PRK12886 79 RAIPAGLISKGSAILFIVLSSLLMLFAAWFLNPLCLYLSPPAL-FFLLLYS-------YCKRFTALAHVVLGFCLALAPL 150 (291)
T ss_pred CCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHh-------hhhccccccHHHHHHHHHHHHH
Confidence 9999999999999999777666666666778888887776544 5578894 3899999999888877665543
Q ss_pred HHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhhCCCCccC
Q 025718 203 FPFFIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEIE 249 (249)
Q Consensus 203 ~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~i~kdi~Di~~ 249 (249)
.|+ .. ..+... ...+++....+++..+.+++++++|.|+
T Consensus 151 ~g~-~a-----~~g~~~--~~~~ll~~~~~lw~~~~~~~~a~~D~e~ 189 (291)
T PRK12886 151 GAW-IA-----IRGTIE--LPAILLGLAVLFWVAGFDILYALQDLEF 189 (291)
T ss_pred HHH-HH-----HcCCCc--HHHHHHHHHHHHHHHHHHHHHHhccHHh
Confidence 333 22 223332 3334445556788889999999999885
No 18
>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional
Probab=99.94 E-value=6e-26 Score=204.58 Aligned_cols=170 Identities=15% Similarity=0.254 Sum_probs=127.2
Q ss_pred HHHHHHHHhhhcchhhHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCccC--CCCC
Q 025718 46 NKKCDAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVN--KPYL 123 (249)
Q Consensus 46 ~~~l~~~~~l~Rp~~~~~~~l~~~~g~~lA~~~~~~~~~~~l~~~l~~~l~~~l~~~a~~iiND~~D~e~D~in--kp~R 123 (249)
.+++++|+|++|||+|.++++.+. +.+++.. ..+.+ .+...+.++++.+++++++|++||++|+|+||+| ||+|
T Consensus 8 ~~~l~~~l~L~RP~~w~~nll~~~-~~~~a~~-~~~~~--~~~~~llafl~~~l~~sa~y~iND~~D~e~Dr~~prk~~R 83 (295)
T PRK12324 8 KNLLAGYLKLLRPKQWIKNLFVFA-APIFAGN-LLNPG--ALLKVLLAFVLFCLASSAVYLVNDIRDVEADRLHPTKRNR 83 (295)
T ss_pred HHHHHHHHHHhCchHHHHHHHHHH-HHHHHHh-hcccc--hHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhccCCCCCCC
Confidence 357899999999999999998654 4455532 11111 1223445667778889999999999999999995 7999
Q ss_pred cccCCCCChHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhHhcCcCCcccccccCchhHHHHHHHHHHHHHHH
Q 025718 124 PLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLF 203 (249)
Q Consensus 124 Pi~sG~IS~~~A~~~~~~l~~~gl~l~~~l~~~~l~l~~l~~~~l~~~YS~~~P~p~~lKr~~~~~~l~v~~~~g~~~~~ 203 (249)
|+|||++|+++|+.++.++.++|+.+++++|+.+..+.. .++++.++||. ++||++.+|+++++..+++-+..
T Consensus 84 PlasG~is~~~A~~~~~~l~~~~l~la~~l~~~~~~~~~-~~~~~~~~Ys~------~lK~~~~~d~l~va~~~~lr~~~ 156 (295)
T PRK12324 84 PIASGVVSVSLAYILAVVLLVASLALAYLLSPKLALVLL-VYLVLNLAYSF------KLKHQPVLDVFCIASGFVLRAIA 156 (295)
T ss_pred CCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhH------HhcCCchhhHHHHHHHHHHHHHH
Confidence 999999999999999999999999998888877666643 45678899987 99999999999887766644444
Q ss_pred HHHHHHHHHHhcCCccccHHHHHHHHHHHHH
Q 025718 204 PFFIHFQKIVLGNPVAFTKPVLFTAAYMVIW 234 (249)
Q Consensus 204 g~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~ 234 (249)
|.. +. +...|.|++.++.+.++|
T Consensus 157 G~~------a~--~~~~s~wll~~~~~~~lf 179 (295)
T PRK12324 157 GGV------AI--GVPLSPWLLLCTALLSLF 179 (295)
T ss_pred HHH------Hh--CCCccHHHHHHHHHHHHH
Confidence 432 22 234667776555444433
No 19
>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=99.94 E-value=9.8e-26 Score=203.14 Aligned_cols=184 Identities=18% Similarity=0.156 Sum_probs=141.6
Q ss_pred HHHHHHHHHhhhcchhhHHHH---HHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCccC-C
Q 025718 45 LNKKCDAFYRLTRPYSCVSII---AALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVN-K 120 (249)
Q Consensus 45 ~~~~l~~~~~l~Rp~~~~~~~---l~~~~g~~lA~~~~~~~~~~~l~~~l~~~l~~~l~~~a~~iiND~~D~e~D~in-k 120 (249)
.++++++|+|++||+++.+.. ++++.|.++|.++. .++.. .+..+++.+++++++|++||++|+|+||+| +
T Consensus 5 ~~~~~~~y~~L~R~~kp~~~~l~~~~~~~g~~lA~~~~--~~~~~---~~l~~lg~~~~~~a~~~~Nd~~D~~iD~~~~R 79 (290)
T PRK12870 5 LEPTWLAIIRLLRWDKPAGRLILMIPALWAVFLAAHGL--PPLPL---VGIIILGALATSAAGCVVNDLWDRDIDPQVER 79 (290)
T ss_pred cchhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHccCC--CCHHH---HHHHHHHHHHHHHHHHHHHhHHHhccCCCCCc
Confidence 346889999999999987766 46677888875432 23222 234567888999999999999999999874 3
Q ss_pred -CCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhHhcCcCCcccccccCchhHHHHHHHHHHH
Q 025718 121 -PYLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGL 199 (249)
Q Consensus 121 -p~RPi~sG~IS~~~A~~~~~~l~~~gl~l~~~l~~~~l~l~~l~~~~l~~~YS~~~P~p~~lKr~~~~~~l~v~~~~g~ 199 (249)
++||+|||++|++||..++.++.++++.+++.+|+.++.++.... ++.++| | ..||++.++++.++..+|+
T Consensus 80 t~~RPL~sG~is~~~a~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~-~~~~~Y----~---~~KR~t~~~~~~lg~~~~~ 151 (290)
T PRK12870 80 TRFRPLASRRLSVKVGIVIAIVALLCAAGLAFFLNPLSFWLCVAAV-PVIFLY----P---LAKRVFPVPQLVLAIAWGF 151 (290)
T ss_pred ccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-HHHHHh----h---hhhhccccceeeehHHHHh
Confidence 589999999999999999999999999999889988888776543 567788 3 4899999999887777775
Q ss_pred HHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhhCCCCccC
Q 025718 200 LLLFPFFIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEIE 249 (249)
Q Consensus 200 ~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~i~kdi~Di~~ 249 (249)
.+..|+. +.++... ...+++.+..++++.+.+++++++|+|+
T Consensus 152 ~~l~g~~------a~~g~~~--~~~~~l~~~~~lw~~~~d~~~a~~D~e~ 193 (290)
T PRK12870 152 AVLISWS------AVTGHLD--LGTWLLWAATVFWTLGFDTVYAMSDRED 193 (290)
T ss_pred HHHHHHH------HHcCCCC--HHHHHHHHHHHHHHHHHHHHHHhhhHhh
Confidence 4333332 2233333 3344556677899999999999999985
No 20
>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=99.94 E-value=2.2e-25 Score=200.28 Aligned_cols=184 Identities=18% Similarity=0.206 Sum_probs=139.8
Q ss_pred HHHHHHHHhhhcchhhHH---HHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCccCC--
Q 025718 46 NKKCDAFYRLTRPYSCVS---IIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNK-- 120 (249)
Q Consensus 46 ~~~l~~~~~l~Rp~~~~~---~~l~~~~g~~lA~~~~~~~~~~~l~~~l~~~l~~~l~~~a~~iiND~~D~e~D~ink-- 120 (249)
.+++++|+|++||+++.+ ..++++.|..+|.... ..++. ..++.+++++++++++|++|||+|+|+|++|+
T Consensus 4 ~~~~~~~~~l~R~~kp~~~~l~~~~~~~g~~la~~~~-~~~~~---~~ll~~l~~~l~~~a~~~~Nd~~D~~iD~~~~Rt 79 (285)
T PRK12847 4 LMKFLAYFKLMRLHKPIGILLVFFPTLFGLLLASHSL-LPDIS---LLVLFIIGSVLMRSAGCIINDIFDRKIDKHVART 79 (285)
T ss_pred HHHHHHHHHHHCcchHHHHHHHHHHHHHHHHHHhCcc-CCcHH---HHHHHHHHHHHHHHHHHHHHhHHHhhhccCCCcc
Confidence 357899999999998776 4466778888875321 12322 23456788899999999999999999999753
Q ss_pred CCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhHhcCcCCcccccccCchhHHHHHHHHHHHH
Q 025718 121 PYLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLL 200 (249)
Q Consensus 121 p~RPi~sG~IS~~~A~~~~~~l~~~gl~l~~~l~~~~l~l~~l~~~~l~~~YS~~~P~p~~lKr~~~~~~l~v~~~~g~~ 200 (249)
|+||+|+|++|++||+.++.++.++++.+++.+|+.++.++.+.. +..+.| | ..||++.++++..+...++.
T Consensus 80 ~~Rpl~sG~is~~~a~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~-~~~~~Y----~---~~Kr~~~~~~~~~g~~~~~~ 151 (285)
T PRK12847 80 KNRPLASGALSVKQALILLFILLLIALVILLLLNKTTIYLSFIAV-ILIVLY----P---LMKRFFYWPQLFLGFTFNMG 151 (285)
T ss_pred cCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-HHHHhc----c---ccccCCcccHHHHHHHHHHH
Confidence 689999999999999999999999999988888888888776544 567888 3 39999999998776666543
Q ss_pred HHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhhCCCCccC
Q 025718 201 LLFPFFIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEIE 249 (249)
Q Consensus 201 ~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~i~kdi~Di~~ 249 (249)
...|. .+.++.. +...+++....++++.+.+++++++|+|+
T Consensus 152 ~l~~~------~a~~g~~--~~~~~~l~~~~~~w~~~~~~~~a~~D~e~ 192 (285)
T PRK12847 152 ILMAF------AAVQNQL--DIEAILLYIGCIFWTIGYDTIYAYQDKKD 192 (285)
T ss_pred HHHHH------HHHcCCC--cHHHHHHHHHHHHHHHHHHHHHHhccHhh
Confidence 32232 2233333 33444556677889999999999999996
No 21
>PRK08238 hypothetical protein; Validated
Probab=99.94 E-value=7.3e-26 Score=216.19 Aligned_cols=182 Identities=19% Similarity=0.230 Sum_probs=139.0
Q ss_pred HHHHHHHHHhhhcchhhHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCccC--CCC
Q 025718 45 LNKKCDAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVN--KPY 122 (249)
Q Consensus 45 ~~~~l~~~~~l~Rp~~~~~~~l~~~~g~~lA~~~~~~~~~~~l~~~l~~~l~~~l~~~a~~iiND~~D~e~D~in--kp~ 122 (249)
.+.++++|++++|||+|.++++.+ .+.+++.. .. +...+...+.++++.+++++++|++||++|+|+||+| ||+
T Consensus 187 ~~~~~~~~~~l~Rp~q~~kn~l~~-~p~l~a~~-~~--~~~~~~~~~~~f~~~~l~~sa~~~~ND~~D~e~Dr~~~rk~~ 262 (479)
T PRK08238 187 RPARLRTWLKALRVHQWAKNLLVF-VPLLAAHQ-FG--DLQALLAALLAFLAFSLCASAVYILNDLLDLEADRAHPRKRR 262 (479)
T ss_pred CchHHHHHHHHhCCcHHHHHHHHH-HHHHHhcc-cC--ChHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhccCCCCCC
Confidence 345789999999999999999874 47776632 11 2222334456778888999999999999999999997 789
Q ss_pred CcccCCCCChHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhHhcCcCCcccccccCchhHHHHHHHHHHHHHH
Q 025718 123 LPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLL 202 (249)
Q Consensus 123 RPi~sG~IS~~~A~~~~~~l~~~gl~l~~~l~~~~l~l~~l~~~~l~~~YS~~~P~p~~lKr~~~~~~l~v~~~~g~~~~ 202 (249)
||+|||++|+++|+.++.+++++|+++++++|+.++.+. +.++++.++||. ++||++.+++++++..+++-+.
T Consensus 263 RPlasG~is~~~A~~~~~~l~~~~~~l~~~l~~~~~~~~-~~~~~~~~~Ys~------~lKr~~~~~~~~la~~~~lr~~ 335 (479)
T PRK08238 263 RPFASGALPIPFGLAAAPLLLLAGLALALALGPAFLLVL-LAYLALTLAYSL------RLKRKVLVDVLTLAALYTLRII 335 (479)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHhhH------HhcCCccccchHHHHHHHHHHH
Confidence 999999999999999999999999999988887554443 455688899977 9999999999888777665444
Q ss_pred HHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhhCCCCcc
Q 025718 203 FPFFIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEI 248 (249)
Q Consensus 203 ~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~i~kdi~Di~ 248 (249)
.|.. +.+ +..+.|++. +..+++..++++|+..|++
T Consensus 336 ~G~~------a~~--~~~s~wll~---~~~~~~l~la~~KR~~El~ 370 (479)
T PRK08238 336 AGAA------AIG--VALSFWLLA---FSMFFFLSLALVKRYTELR 370 (479)
T ss_pred HHHH------Hhc--cCHHHHHHH---HHHHHHHHHHHHHhHHHHH
Confidence 4432 222 344455543 3344566789999987764
No 22
>PRK13362 protoheme IX farnesyltransferase; Provisional
Probab=99.94 E-value=4.4e-25 Score=200.18 Aligned_cols=184 Identities=13% Similarity=0.188 Sum_probs=138.1
Q ss_pred HHHHHHHHhhhcchhhHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCccC--CCCC
Q 025718 46 NKKCDAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVN--KPYL 123 (249)
Q Consensus 46 ~~~l~~~~~l~Rp~~~~~~~l~~~~g~~lA~~~~~~~~~~~l~~~l~~~l~~~l~~~a~~iiND~~D~e~D~in--kp~R 123 (249)
++++++|++++||+++..+.++++.|+++|..+ +.++.. .+.++++.++.++++|++|||+|+|+|++| +|+|
T Consensus 10 ~~~l~~~~~L~RP~~~~~~~~~~~~G~~la~~~--~~~~~~---~~~~~lg~~l~~aaa~~~Nd~~D~~iD~~~~Rt~~R 84 (306)
T PRK13362 10 EASLKDYIQVTKPGIIFGNVISVAGGFFLASKG--HVDPVL---MLAAVIGLSLVVASGCALNNCIDRDIDAKMQRTRNR 84 (306)
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccC--CCCHHH---HHHHHHHHHHHHHHHHHHhChHHhCcCCCCCCCCCC
Confidence 356789999999999999999999999998432 233322 234567888999999999999999999975 3699
Q ss_pred cccCCCCChHHHHHHHHHHHHHHHHHH-HHhchHHHHHHHHHHHHHhhHhcCcCCcccccccCchhHHHHHHHHHHHHHH
Q 025718 124 PLACGDFSMGEGLAITIASPLMAVAMG-IMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLL 202 (249)
Q Consensus 124 Pi~sG~IS~~~A~~~~~~l~~~gl~l~-~~l~~~~l~l~~l~~~~l~~~YS~~~P~p~~lKr~~~~~~l~v~~~~g~~~~ 202 (249)
|+|||++|+++|+.++.++.++|+.++ +..|..+..++.+..+++.++||. ++||++.++++..+...++.+.
T Consensus 85 PlpsG~is~~~A~~~~~~l~~~g~~ll~~~~n~~~~~l~~~~~~~~~~~Yt~------~lKr~t~~~~~vgg~~ga~p~l 158 (306)
T PRK13362 85 VTVTGEISLGEALGFGLALGVAGFGLLAAFTNPLAALFAAFGYVVYVGVYSL------YLKRNSVYGTLVGSLSGAMPPV 158 (306)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhH------HHhccCcHhHHHHHHHHHHHHH
Confidence 999999999999999999999998865 446777665655444457789976 8999999999877766665554
Q ss_pred HHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHH---hhCCCCcc
Q 025718 203 FPFFIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAF---VKVTNSEI 248 (249)
Q Consensus 203 ~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~i---~kdi~Di~ 248 (249)
.|.. +.++... ...+++..+++++....+. ++|.||.|
T Consensus 159 ~G~~------a~~g~~~--~~~~~l~~~~~~W~~~h~~~~ai~~~~Dy~ 199 (306)
T PRK13362 159 VGYC------AVTGQFD--AGALILLLMFSLWQMPHSYAIAIFRFNDYA 199 (306)
T ss_pred HHHH------HHcCCCc--HHHHHHHHHHHHHHHHHHHHHHHHhHhhHH
Confidence 5543 2333433 3444556677788777654 55556654
No 23
>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed
Probab=99.94 E-value=3e-25 Score=198.91 Aligned_cols=182 Identities=16% Similarity=0.186 Sum_probs=132.7
Q ss_pred HHHHHHhhhcchhhHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCccCC--CCCcc
Q 025718 48 KCDAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNK--PYLPL 125 (249)
Q Consensus 48 ~l~~~~~l~Rp~~~~~~~l~~~~g~~lA~~~~~~~~~~~l~~~l~~~l~~~l~~~a~~iiND~~D~e~D~ink--p~RPi 125 (249)
++|+|+|++||++.....++++.|.++|.+. ..++.. .+..+++.+++++++|++|||+|+|+|++|+ |+||+
T Consensus 1 ~~~~~~~l~rp~~~~~~~~~~~~g~~la~~~--~~~~~~---~~l~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl 75 (279)
T PRK12869 1 KIKAYLKLLKPRVIWLLDLAAVAGYFLAAKH--GVSWLP---LIPLLIGGTLASGGSAAFNHGIERDIDKVMSRTSKRPT 75 (279)
T ss_pred CHHHHHHHhHHHHHHHHHHHHHHHHHHhccC--CCCHHH---HHHHHHHHHHHHHHHHHHhchHhcCCCCCCCCCCCCCc
Confidence 4689999999999999999999999998532 123322 2345678889999999999999999999975 79999
Q ss_pred cCCCCChHHHHHHHHHHHHHHHHHHHH-hchHHHHHHHHHHHHHhhHhcCcCCcccccccCchhHHHHHHHHHHHHHHHH
Q 025718 126 ACGDFSMGEGLAITIASPLMAVAMGIM-LRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFP 204 (249)
Q Consensus 126 ~sG~IS~~~A~~~~~~l~~~gl~l~~~-l~~~~l~l~~l~~~~l~~~YS~~~P~p~~lKr~~~~~~l~v~~~~g~~~~~g 204 (249)
|+|++|++||..++.++.++|+.++.+ +|+.+.....+..+++.++||. ++||++.+ +..++...|....+|
T Consensus 76 ~sG~is~~~a~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~Yt~------~lKr~~~~-~~~v~~~~g~~~~l~ 148 (279)
T PRK12869 76 PVGLVNRKEALAVGSALSALGTALGFLLLGPLTALFIALGWFFYAVVYTI------WLKPRTWL-NIVIGGFAGNAAALA 148 (279)
T ss_pred CCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCc------ccccCChH-HHHHHHHHHHHHHHH
Confidence 999999999999999999999998877 7877644333344467788976 89999976 445555555454555
Q ss_pred HHHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHH---HhhCCCCcc
Q 025718 205 FFIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIA---FVKVTNSEI 248 (249)
Q Consensus 205 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~---i~kdi~Di~ 248 (249)
.+.. ..+.. +...+++...++++..+.. ..||.||.+
T Consensus 149 g~~a-----~~g~~--~~~~~ll~~~~~~w~~~~~~~l~~~d~edd~ 188 (279)
T PRK12869 149 GYAS-----GTGSL--DLEAVLLSFLIYLWTPGHIWSLALKYREDYR 188 (279)
T ss_pred HHHH-----HhCCC--CHHHHHHHHHHHHHHHHHHHHHHHHhHHhHH
Confidence 5433 22232 3344445556666776665 346666653
No 24
>PRK04375 protoheme IX farnesyltransferase; Provisional
Probab=99.93 E-value=5.6e-25 Score=198.74 Aligned_cols=183 Identities=14% Similarity=0.122 Sum_probs=132.5
Q ss_pred HHHHHHHHhhhcchhhHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCccCC--CCC
Q 025718 46 NKKCDAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNK--PYL 123 (249)
Q Consensus 46 ~~~l~~~~~l~Rp~~~~~~~l~~~~g~~lA~~~~~~~~~~~l~~~l~~~l~~~l~~~a~~iiND~~D~e~D~ink--p~R 123 (249)
++++++|+|++||+++....++++.|.++|.++ ..++.. .+..+++++++++++|++|||+|+|+|++|+ |+|
T Consensus 7 ~~~~~~y~~L~rp~~~~~~~~~~~~G~~la~~~--~~~~~~---~~l~~l~~~l~~aa~~~iNd~~D~~iD~~~~Rt~~R 81 (296)
T PRK04375 7 RATLKDYLALTKPRVISLNLFTALGGMLLAPPG--VPPLLL---LLLTLLGIALVAGAAGALNNYIDRDIDAKMERTKNR 81 (296)
T ss_pred hhhHHHHHHHhHHHHHHHHHHHHHHHHHHhcCC--CCCHHH---HHHHHHHHHHHHHHHHHHHhHHhhccCCCCCccCCC
Confidence 357899999999999999999999999998532 223322 2346788899999999999999999999975 799
Q ss_pred cccCCCCChHHHHHHHHHHHHHHHHHHHH-hchHHHHHHHHHHHHHhhHhcCcCCcccccccCchhHHHHHHHHHHH-HH
Q 025718 124 PLACGDFSMGEGLAITIASPLMAVAMGIM-LRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGL-LL 201 (249)
Q Consensus 124 Pi~sG~IS~~~A~~~~~~l~~~gl~l~~~-l~~~~l~l~~l~~~~l~~~YS~~~P~p~~lKr~~~~~~l~v~~~~g~-~~ 201 (249)
|+|+|++|++||+.++.++.++|++++++ .|+.+..++.+..+.+...||. ++||++. ++..++...|. .+
T Consensus 82 pl~sG~is~~~a~~~~~~l~~~g~~l~~~l~~~~~~~l~~~~~~~~~~~Ys~------~lKr~~~-~~~~v~~~~g~~~~ 154 (296)
T PRK04375 82 PLVTGRISPREALIFGLVLGVLGFLLLGLFVNPLAAWLTLAGIFFYVVVYTL------WLKRRTP-QNIVIGGAAGAMPP 154 (296)
T ss_pred CCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcc------chhcCCc-cchHHHHHHHHhHH
Confidence 99999999999999999999999988754 5766666655444346778976 7999984 56555544442 23
Q ss_pred HHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHH---HhhCCCCcc
Q 025718 202 LFPFFIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIA---FVKVTNSEI 248 (249)
Q Consensus 202 ~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~---i~kdi~Di~ 248 (249)
..|.+ +..+.. +...+++.+..+++....+ -.||.||.+
T Consensus 155 l~g~~------a~~g~~--~~~~~~l~~~~~lw~~~~~~~~~~~d~~D~~ 196 (296)
T PRK04375 155 LIGWA------AVTGSL--SWEALILFLIIFLWTPPHFWALAIFRKDDYA 196 (296)
T ss_pred HHHHH------HhCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 33332 222333 3334444555666664443 478888864
No 25
>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed
Probab=99.93 E-value=2.1e-24 Score=193.73 Aligned_cols=183 Identities=18% Similarity=0.169 Sum_probs=136.8
Q ss_pred HHHHHHHHhhhcchhhHHHH---HHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCccCC--
Q 025718 46 NKKCDAFYRLTRPYSCVSII---AALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNK-- 120 (249)
Q Consensus 46 ~~~l~~~~~l~Rp~~~~~~~---l~~~~g~~lA~~~~~~~~~~~l~~~l~~~l~~~l~~~a~~iiND~~D~e~D~ink-- 120 (249)
++++++|+|++|++++..+. ++.+.|..+|..... +... .+..+++.+++++++|++||++|+|+|++|+
T Consensus 2 ~~~~~~y~~L~R~~kp~~~~l~~~p~~~g~~la~~~~~--~~~~---~~l~~~g~~l~~~a~~~~Nd~~D~~iD~~~~Rt 76 (282)
T PRK12848 2 QNRLLAYARLMRLDKPIGTLLLLWPTLWALWLAADGIP--DLWV---LVVFVLGVFLMRAAGCVINDYADRDFDGHVKRT 76 (282)
T ss_pred chhHHHHHHHHCccchHHHHHHHHHHHHHHHHHcCCCC--CHHH---HHHHHHHHHHHHHHHHHHHhhHHhccCCCCCCC
Confidence 35789999999977765555 446678777753222 2221 2345678889999999999999999999753
Q ss_pred CCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhHhcCcCCcccccccCchhHHHHHHHHHHHH
Q 025718 121 PYLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLL 200 (249)
Q Consensus 121 p~RPi~sG~IS~~~A~~~~~~l~~~gl~l~~~l~~~~l~l~~l~~~~l~~~YS~~~P~p~~lKr~~~~~~l~v~~~~g~~ 200 (249)
|+||+|||++|+++|+.++.++.++++.+++.+|+.+..++++.. +..++| | ..||++.++++.++...|+.
T Consensus 77 ~~RPl~sG~is~~~a~~~~~~l~~~~~~l~~~l~~~~~~l~~~~~-~~~~~Y----~---~~Kr~~~~~~~~~g~~~g~~ 148 (282)
T PRK12848 77 KNRPLASGAVSEKEALALFVVLVLVAFLLVLTLNTLTIWLSVAAL-ALAWIY----P---FMKRYTHLPQVVLGAAFGWG 148 (282)
T ss_pred CCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-HHHHHH----H---hHHhcCcccHHHHHHHHHHH
Confidence 689999999999999999999999999988888988887776443 557888 4 58999999998887777765
Q ss_pred HHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhhCCCCccC
Q 025718 201 LLFPFFIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEIE 249 (249)
Q Consensus 201 ~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~i~kdi~Di~~ 249 (249)
+..|+. +.++... ...++......++......+++++|+|+
T Consensus 149 ~~~g~~------a~~~~~~--~~~~~l~~~~~~w~~~~~~~~a~~D~e~ 189 (282)
T PRK12848 149 IPMAFA------AVQGSVP--LEAWLLFLANILWTVAYDTQYAMVDRDD 189 (282)
T ss_pred HHHHHH------HHhCCCc--HHHHHHHHHHHHHHHHHHHHHHhccHhh
Confidence 444432 2233333 3334444556778888888888999885
No 26
>PRK12888 ubiA prenyltransferase; Reviewed
Probab=99.93 E-value=1.1e-24 Score=195.88 Aligned_cols=183 Identities=14% Similarity=0.105 Sum_probs=138.0
Q ss_pred HHHHHHhhhcchhhHHHHHHHHHHHHhcCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCccCC--CCCc
Q 025718 48 KCDAFYRLTRPYSCVSIIAALLSVSLLPLQ-SPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNK--PYLP 124 (249)
Q Consensus 48 ~l~~~~~l~Rp~~~~~~~l~~~~g~~lA~~-~~~~~~~~~l~~~l~~~l~~~l~~~a~~iiND~~D~e~D~ink--p~RP 124 (249)
++++++|++||++.+......+.+.+.+.. .....++.. .++.+++.+++++++|++||++|+|+|++|+ |+||
T Consensus 1 ~~~~~~~l~r~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~---~~l~~l~~~l~~~a~~~~Nd~~Dr~iD~~~~RT~~RP 77 (284)
T PRK12888 1 RVRAFLRLVAIEHSVFALPFAYIAALTAMFASDGSVHWAD---LLLVTVAMVGARTFAMAANRIIDREIDARNPRTAGRE 77 (284)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHHHHHHHHHHHhHHhhCCCCCCCCCCCCC
Confidence 368999999999988877666666666531 011223322 2345788899999999999999999999986 7999
Q ss_pred ccCCCCChHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhHhcCcCCcccccccCchhHHHHHHHHHHHHHHHH
Q 025718 125 LACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFP 204 (249)
Q Consensus 125 i~sG~IS~~~A~~~~~~l~~~gl~l~~~l~~~~l~l~~l~~~~l~~~YS~~~P~p~~lKr~~~~~~l~v~~~~g~~~~~g 204 (249)
+|+|++|++||+.++.++.++++.++..+|+.++.++.+.. +....| | +.||++.++++.++...++....|
T Consensus 78 L~sG~is~~~a~~~~~~~~~~~l~l~~~l~~~~~~l~~~~~-~~~~~Y----~---~~Kr~t~~~~~~lg~~~~~~~l~g 149 (284)
T PRK12888 78 LVTGAVSVRTAWTGALVALAVFLGAAALLNPLCLALAPLAV-APLVVY----P---YAKRFTNFPHAILGLAQAVGPVGA 149 (284)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-HHHHHH----H---HhhcccchhhHHHHHHHHHHHHHH
Confidence 99999999999999999888888888888888877776443 556788 4 589999999988777766544434
Q ss_pred HHHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhhCCCCccC
Q 025718 205 FFIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEIE 249 (249)
Q Consensus 205 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~i~kdi~Di~~ 249 (249)
+ . +..+.. +...+++.+..++++.+.+++|+++|+|+
T Consensus 150 ~-~-----a~~g~~--~~~~~ll~~~~~~w~~~~~~i~a~~D~e~ 186 (284)
T PRK12888 150 W-I-----AVTGTW--SWPAVLLGLAVGLWIGGFDLIYACQDAEV 186 (284)
T ss_pred H-H-----HHcCCC--CHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 3 2 222333 33444556677889999999999999985
No 27
>PRK13595 ubiA prenyltransferase; Provisional
Probab=99.93 E-value=4e-24 Score=191.64 Aligned_cols=184 Identities=17% Similarity=0.234 Sum_probs=133.8
Q ss_pred HHHHHHHHhhhcchhhHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCccCCCCCcc
Q 025718 46 NKKCDAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNKPYLPL 125 (249)
Q Consensus 46 ~~~l~~~~~l~Rp~~~~~~~l~~~~g~~lA~~~~~~~~~~~l~~~l~~~l~~~l~~~a~~iiND~~D~e~D~inkp~RPi 125 (249)
...++.+++++||..|+.+..++.+|...+.. ..++.+.. .+..+......+...|.+|||+|+|+|++|+|+||+
T Consensus 9 ~~~l~~ll~~sRP~~wi~t~~~~~~G~~~~g~-~~~~~~~~---~~l~~~~~~p~n~~~~giND~fD~eiDa~Npr~~~i 84 (292)
T PRK13595 9 LLPLRRLLLISRPALWVNTVGTLVTGVWLTGH-LYTLDPGV---LPLLLYLTLPFNLLIYGLNDLADRETDAASPRKGGW 84 (292)
T ss_pred hhHHHHHHHHhCcHHHHHHHHHHHHHHHHhcC-cccchhHH---HHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCCCC
Confidence 35667789999999999999999999877743 12221122 123455667788899999999999999999999999
Q ss_pred cCCCCChHHHHHHHHHHHHH----HHHHHHHhchHHHHHHHHHHHHHhhHhcCcCCcccccccCchhHHHHHHHHHHHHH
Q 025718 126 ACGDFSMGEGLAITIASPLM----AVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLL 201 (249)
Q Consensus 126 ~sG~IS~~~A~~~~~~l~~~----gl~l~~~l~~~~l~l~~l~~~~l~~~YS~~~P~p~~lKr~~~~~~l~v~~~~g~~~ 201 (249)
++|++|+++++.+..++..+ ++.+++.+|+.++.+..+ ..++.++||. | |+++|+++++|+++. ..+|..+
T Consensus 85 ~~G~is~~~~~~~~~~~~~~~~~~~l~la~~l~~~~~~l~~v-~~~l~~~YS~--p-PlRlK~rp~l~~l~~-~~~g~p~ 159 (292)
T PRK13595 85 QGARLSPGEVRPLLRAVLLLNAPFLLYLALLLPPAATLLLLL-YAALFVGYSL--P-PLRFKARPFLDGLSN-AAYALPL 159 (292)
T ss_pred CcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHcc--C-ccchhcCcchhHHHH-HHHHHHH
Confidence 99999999999976655544 445566677777666654 4589999999 8 999999999999885 3444322
Q ss_pred HHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhhCCCCccC
Q 025718 202 LFPFFIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEIE 249 (249)
Q Consensus 202 ~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~i~kdi~Di~~ 249 (249)
..| ..+.|.. ..+..+ ....+|..+.+++||++|+|.
T Consensus 160 ~~~------~~~~g~~---~~~~~l--~a~~~w~~g~dii~ai~Dieg 196 (292)
T PRK13595 160 ALP------ALALGAP---VPWPPL--LALMAWSVGKHAFDAAQDIPA 196 (292)
T ss_pred HHH------HHHcCCc---chHHHH--HHHHHHHHHHHHHHhccChHh
Confidence 222 1123322 123322 234577799999999999984
No 28
>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=99.92 E-value=5e-24 Score=193.94 Aligned_cols=188 Identities=15% Similarity=0.141 Sum_probs=142.6
Q ss_pred HHHHHHHHHHHhhh---cchhhHHHHHHHHHHHHhcCCCCC---CCCHHHHHHHHHHHHHHHHHHHHHHhhhhccccccC
Q 025718 43 QVLNKKCDAFYRLT---RPYSCVSIIAALLSVSLLPLQSPA---DFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHID 116 (249)
Q Consensus 43 ~~~~~~l~~~~~l~---Rp~~~~~~~l~~~~g~~lA~~~~~---~~~~~~l~~~l~~~l~~~l~~~a~~iiND~~D~e~D 116 (249)
+..+.++++|+|++ ||+......++++.|.++|..... ..++. ..++.+++++++++++|++|||+|+|+|
T Consensus 24 ~~~~~~~~~y~~L~R~~kP~~~~l~~~p~~~G~~lA~~~~~~~~~~~~~---~~~l~~l~~~l~~~a~~~~Nd~~Dr~iD 100 (314)
T PRK12878 24 RRLPPWLRPYAQLARWDRPIGWWLLLWPCWWSAALAAGAAADLGLLLLW---HLFLFFVGAIAMRGAGCTYNDIVDRDID 100 (314)
T ss_pred hhcchhHHHHHHHHccccchhhHHHHHHHHHHHHHhcccccCCCCCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34668999999999 888999999999999999854211 22322 2345678899999999999999999999
Q ss_pred ccCC--CCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhHhcCcCCcccccccCchhHHHHHH
Q 025718 117 KVNK--PYLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTII 194 (249)
Q Consensus 117 ~ink--p~RPi~sG~IS~~~A~~~~~~l~~~gl~l~~~l~~~~l~l~~l~~~~l~~~YS~~~P~p~~lKr~~~~~~l~v~ 194 (249)
++|+ |+||+|+|++|++||+.++.++.++|+.+.+..|++++.++++. ++..+.| | .+||++.++++..+
T Consensus 101 ~~~~Rt~~RPl~sG~is~~~a~~~~~~~~~~g~~l~~~~~~~~~~l~~~~-~~~~~~Y----~---~~KR~t~~~~~~~G 172 (314)
T PRK12878 101 AKVARTRSRPLPSGQVSRKQAKVFMVLQALVGLAVLLQFNWFAIALGIAS-LAIVAAY----P---FMKRITWWPQFFLG 172 (314)
T ss_pred cCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-HHHHHHH----H---HHHhcCCcchHHHH
Confidence 9764 68999999999999999999999999998887888887777654 4668889 4 49999999987665
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhhCCCCccC
Q 025718 195 SMNGLLLLFPFFIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEIE 249 (249)
Q Consensus 195 ~~~g~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~i~kdi~Di~~ 249 (249)
+..++....|++ +.++...+ ..+++....+++....+.+++++|+|+
T Consensus 173 l~~~~~~l~g~~------a~~g~~~~--~~~~l~~~~~~w~~~~~~~~a~~D~e~ 219 (314)
T PRK12878 173 LAFSWGALMGWA------AHFGSLSL--AAVLLYAGSIAWTIGYDTIYAHQDKED 219 (314)
T ss_pred HHHHHHHHHHHH------HHhCCCch--HHHHHHHHHHHHHHHHHHHHHhhhHhh
Confidence 554443333422 22333333 333444556788889999999999985
No 29
>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated
Probab=99.92 E-value=6.7e-24 Score=191.10 Aligned_cols=185 Identities=18% Similarity=0.187 Sum_probs=143.3
Q ss_pred HHHHHhhhcchhhHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhcccc--ccCcc--CCCCCc
Q 025718 49 CDAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADV--HIDKV--NKPYLP 124 (249)
Q Consensus 49 l~~~~~l~Rp~~~~~~~l~~~~g~~lA~~~~~~~~~~~l~~~l~~~l~~~l~~~a~~iiND~~D~--e~D~i--nkp~RP 124 (249)
+|+|++++||+++..+.++++.|..+|... ..+++. ..+..+++.+++++++|.+|||+|+ ++|+. ++|+||
T Consensus 3 ~~~~~~~~Rp~~~~~~~~p~l~G~~~a~~~-~~~~~~---~~ll~~l~~~l~~~~~n~~Ndy~D~~~g~D~~~~~~~~r~ 78 (293)
T PRK06080 3 FKAWLELARPKTLPAAFAPVLVGTALAYWL-GSFHPL---LALLALLAALLLQIATNLANDYGDYVKGTDTEDRVGPLRA 78 (293)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHc-CCccHH---HHHHHHHHHHHHHHHHHHHHhHHHhccCCCcccccCCccc
Confidence 678999999999999999999999888431 223432 2344577889999999999999999 57854 678999
Q ss_pred ccCCCCChHHHHHHHHHHHHHHHHHHHHh----chHHHHHHHHHHHHHhhHhcCcCCcccccccCchhHHHHHHHHHHHH
Q 025718 125 LACGDFSMGEGLAITIASPLMAVAMGIML----RSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLL 200 (249)
Q Consensus 125 i~sG~IS~~~A~~~~~~l~~~gl~l~~~l----~~~~l~l~~l~~~~l~~~YS~~~P~p~~lKr~~~~~~l~v~~~~g~~ 200 (249)
+++|++|++++..++.++.+++++++..+ +.+.+.+++ .+++.++.||. | |+++|++ .+||+.++..+|+.
T Consensus 79 l~~G~is~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~-~~~~~~~~Ys~--~-p~~~~~~-glge~~~~~~~G~~ 153 (293)
T PRK06080 79 IGRGGISPKQVKRAAIAFFGLAALLGLYLVAVSGWWLLLLGL-LCIAAAILYTG--G-PKPYGYT-GLGELFVGVFFGLV 153 (293)
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHhhhhcC--C-CCccCCC-CcHHHHHHHHHHHH
Confidence 99999999999999988888776665443 544455544 34577899999 7 8888876 48999998888887
Q ss_pred HHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhhCCCCccC
Q 025718 201 LLFPFFIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEIE 249 (249)
Q Consensus 201 ~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~i~kdi~Di~~ 249 (249)
+..|.++. +. + . .+...++.+...+++..++.++||++|+|+
T Consensus 154 ~~~~~~~~-~~---~-~--~~~~~~~~~l~~~l~~~~~~~~n~~~D~~~ 195 (293)
T PRK06080 154 IVLGTYYL-QA---G-T--VDSAVFLPALPCGLLIGAVLLANNIRDIET 195 (293)
T ss_pred HHHHHHHH-hc---C-C--CCHHHHHHHHHHHHHHHHHHHhcCCCcchh
Confidence 66666443 11 1 1 335566777888899999999999999996
No 30
>PRK12873 ubiA prenyltransferase; Reviewed
Probab=99.92 E-value=2.3e-24 Score=194.05 Aligned_cols=185 Identities=17% Similarity=0.167 Sum_probs=137.9
Q ss_pred HHHHHHHHhhhcchhhHHHHHH---HHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCccC--C
Q 025718 46 NKKCDAFYRLTRPYSCVSIIAA---LLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVN--K 120 (249)
Q Consensus 46 ~~~l~~~~~l~Rp~~~~~~~l~---~~~g~~lA~~~~~~~~~~~l~~~l~~~l~~~l~~~a~~iiND~~D~e~D~in--k 120 (249)
++++++|+|++||+++.++.+. .+.|.+++.... .+.. ..+..+++++++++++|++||+.|+|+||+| +
T Consensus 4 ~~~~~~y~~L~R~~Kp~~~~ll~~p~~~g~~la~~~~--~~~~---~~~~~~~g~~l~~~a~~~~Nd~~D~~iD~~~~RT 78 (294)
T PRK12873 4 SIKLSPWFELLRWNKPTGRLILLIPAGWSLWLTPSAP--PSLL---LLLLIILGGLAVSGAGCIANDLWDRRIDRKVERT 78 (294)
T ss_pred hHhHHHHHHHhCccccchHHHHHHHHHHHHHHccCCC--CCHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcC
Confidence 3578899999998888777755 445666653321 1221 2345678999999999999999999999986 4
Q ss_pred CCCcccCCCCChHHHHHHHHHHHHHHHHHHHHh----chHHHHHHHHHHHHHhhHhcCcCCcccccccCchhHHHHHHHH
Q 025718 121 PYLPLACGDFSMGEGLAITIASPLMAVAMGIML----RSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISM 196 (249)
Q Consensus 121 p~RPi~sG~IS~~~A~~~~~~l~~~gl~l~~~l----~~~~l~l~~l~~~~l~~~YS~~~P~p~~lKr~~~~~~l~v~~~ 196 (249)
++||+|+|++|++||+.++.++.++++.+++.+ |+.+..++.+.. ++..+| | .+||++.+.++..+..
T Consensus 79 ~~RPl~sG~is~~~A~~~~~~~~~~~~~~~~~l~~~~n~l~~~l~~~~~-~~~~~Y----~---~~KR~t~~~~~vlg~~ 150 (294)
T PRK12873 79 KNRPLARGKISLKTAYSLLIVLLLLSLFVVLSLPQPSRNLCLSLAFLAL-PPILIY----P---SAKRWFAYPQAILALC 150 (294)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH-HHHHHH----H---HHHhccccchHHHHHH
Confidence 799999999999999999999999998887665 566777776544 577889 3 4999999999877666
Q ss_pred HHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhhCCCCccC
Q 025718 197 NGLLLLFPFFIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEIE 249 (249)
Q Consensus 197 ~g~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~i~kdi~Di~~ 249 (249)
.++....|+ .+..+...+..+.+++.+..++|..+.++++.++|.|+
T Consensus 151 ~a~~~l~gw------~Av~g~~~~~~~~l~l~~~~~~W~~~~d~iyA~qD~ed 197 (294)
T PRK12873 151 WGFAVLIPW------AAAEGSLNGGWPLLFCWLATLLWTFGFDTVYAMADRRD 197 (294)
T ss_pred HHhHHHHHH------HHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Confidence 654444333 23344444434444445677899999999999999874
No 31
>PRK05951 ubiA prenyltransferase; Reviewed
Probab=99.92 E-value=1.4e-23 Score=189.67 Aligned_cols=188 Identities=14% Similarity=0.179 Sum_probs=143.9
Q ss_pred HHHHHHHhhhcchhhHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhccc--cccCccCC---C
Q 025718 47 KKCDAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLAD--VHIDKVNK---P 121 (249)
Q Consensus 47 ~~l~~~~~l~Rp~~~~~~~l~~~~g~~lA~~~~~~~~~~~l~~~l~~~l~~~l~~~a~~iiND~~D--~e~D~ink---p 121 (249)
+++|.+++.+||++......+++.|..+|.....++++.. .+..+++++++++++|++|||+| +|.|+.++ |
T Consensus 2 ~~~~~~~~~~Rp~tl~~s~~~v~lG~a~a~~~~~~f~~~~---~ll~~l~~~l~~~~~n~~Ndy~D~~~g~D~~~rt~~~ 78 (296)
T PRK05951 2 QNAKLFFIFTRPWSFVMTAIVAFFSIAYGYYLFRSFDPLL---GALMLLGYFLLHASLNVFNDYKDYVLDCDHHETTGYR 78 (296)
T ss_pred ccHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCcCHHH---HHHHHHHHHHHHHHHHHHHhHHHHhcCCccccccCCC
Confidence 4689999999999999999999999888853223455432 34567889999999999999999 55565532 7
Q ss_pred CCcccCCCCChHHHHHHHHHHHHHHHHHHHH----hchHHHHHHHHHHHHHhhHhcCcCCcccccccCchhHHHHHHHHH
Q 025718 122 YLPLACGDFSMGEGLAITIASPLMAVAMGIM----LRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMN 197 (249)
Q Consensus 122 ~RPi~sG~IS~~~A~~~~~~l~~~gl~l~~~----l~~~~l~l~~l~~~~l~~~YS~~~P~p~~lKr~~~~~~l~v~~~~ 197 (249)
+||+++|++|+++++.++.++..+++.++.. .+...+.+++ .+++.++.||. | |+++|++ .+|++.++..+
T Consensus 79 ~r~l~~G~is~~~~~~~~~~~~~ia~~~g~~l~~~~~~~~l~l~~-~~~~~~~~Yt~--~-P~~lky~-glGe~~v~~~~ 153 (296)
T PRK05951 79 QHPIQAGIMTLGHLRVLGIALGAIALQLGWSLVLDRGIGAVTLAL-LGVFLWTCYMG--P-PFFLKYR-WLGEHLVFYAW 153 (296)
T ss_pred CCccccCCcCHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH-HHHHHHHHHcC--C-CcccCCC-CchHHHHHHHH
Confidence 8999999999999999999987777655432 2444555554 45688999999 8 8899865 69999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhhCCCCccC
Q 025718 198 GLLLLFPFFIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEIE 249 (249)
Q Consensus 198 g~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~i~kdi~Di~~ 249 (249)
|+.+..|.++. ++ +.. +...+..+.-.+++..++..+||++|+|+
T Consensus 154 g~~~vlg~~~~-~~----~~~--~~~~~~~sl~~~l~~~~il~~n~~~D~e~ 198 (296)
T PRK05951 154 SHMLVMGLIYV-WL----GNL--SSPNLLAGVPLGLLMALVLLSNNLRDIED 198 (296)
T ss_pred HHHHHHHHHHH-Hh----Ccc--cHHHHHHHHHHHHHHHHHHHHCCCccchh
Confidence 98888888655 22 122 23344555666777888999999999996
No 32
>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial. A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.
Probab=99.92 E-value=1.9e-23 Score=187.47 Aligned_cols=180 Identities=16% Similarity=0.172 Sum_probs=132.5
Q ss_pred HHHHhhhcchhhHHH---HHHHHHHHHhcCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCccCC--CCC
Q 025718 50 DAFYRLTRPYSCVSI---IAALLSVSLLPLQSPADF-TPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNK--PYL 123 (249)
Q Consensus 50 ~~~~~l~Rp~~~~~~---~l~~~~g~~lA~~~~~~~-~~~~l~~~l~~~l~~~l~~~a~~iiND~~D~e~D~ink--p~R 123 (249)
++|+|++|++++.+. .++...|..+|... ... ++.. .+...++++++++++|++|||+|+|+|++|+ |+|
T Consensus 2 ~~y~~l~R~~kp~~~~l~~~~~~~g~~la~~~-~~~~~~~~---~~~~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~R 77 (281)
T TIGR01474 2 LPYAKLMRADKPIGTLLLLWPCLWSLLLAAQA-GGIPPLYL---LGLFTVGAILMRGAGCVINDIWDRDFDPQVERTKSR 77 (281)
T ss_pred hHHHHHHccccHHHHHHHHHHHHHHHHHHhcc-cCCCcHHH---HHHHHHHHHHHHHHHHHHHhHhhhcccccCCcccCC
Confidence 467777776655444 55566788887431 112 2221 2345678889999999999999999999753 689
Q ss_pred cccCCCCChHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhHhcCcCCcccccccCchhHHHHHHHHHHHHHHH
Q 025718 124 PLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLF 203 (249)
Q Consensus 124 Pi~sG~IS~~~A~~~~~~l~~~gl~l~~~l~~~~l~l~~l~~~~l~~~YS~~~P~p~~lKr~~~~~~l~v~~~~g~~~~~ 203 (249)
|+|+|++|++||+.++.++.++|+.+++.+|+.+..++++. ++..+.|+ .+||++.++++..+...++....
T Consensus 78 Pl~sG~is~~~a~~~~~~~~~~~~~l~~~l~~~~~~l~~~~-~~~~~~Y~-------~~Kr~~~~~~~~~g~~~~~~~~~ 149 (281)
T TIGR01474 78 PLASGAVSVRQAILFLLVQLLVALGVLLQLNPLTILLGVAS-LALVATYP-------FMKRITYWPQLVLGLAFGWGALM 149 (281)
T ss_pred CCCCCCcCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH-HHHHHHhc-------hhcccccccHHHHHHHHHHHHHH
Confidence 99999999999999999999999999888898888777654 46688884 49999999998777666655444
Q ss_pred HHHHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhhCCCCccC
Q 025718 204 PFFIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEIE 249 (249)
Q Consensus 204 g~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~i~kdi~Di~~ 249 (249)
|.+ +.++.. +...+++.....++..+.+.+|+++|+|+
T Consensus 150 g~~------a~~g~~--~~~~~ll~~~~~lw~~~~~~~~a~~D~e~ 187 (281)
T TIGR01474 150 GWA------AVTGDL--STAAWVLYLANILWTLGYDTIYAMQDKED 187 (281)
T ss_pred HHH------HHcCCC--cHHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence 532 222333 33334345567888999999999999985
No 33
>PRK13592 ubiA prenyltransferase; Provisional
Probab=99.92 E-value=5e-24 Score=190.63 Aligned_cols=145 Identities=10% Similarity=0.067 Sum_probs=105.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhccccccCccCCCCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHh
Q 025718 90 AFKCMVPAIMMNNYANAINQLADVHIDKVNKPYLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVG 169 (249)
Q Consensus 90 ~l~~~l~~~l~~~a~~iiND~~D~e~D~inkp~RPi~sG~IS~~~A~~~~~~l~~~gl~l~~~l~~~~l~l~~l~~~~l~ 169 (249)
.+++++..++..+++|++|||+|+|+||+|+|+||+|||++|+++|+.++..+.++++.++... ...... .+..
T Consensus 48 ~~l~~~~vf~~~~~gniiNDy~D~EIDrIN~P~RPLPsG~VS~~~A~~~si~L~~~~l~L~~l~-----~i~i~~-~~i~ 121 (299)
T PRK13592 48 EFVGVFTVFGFWMILRIADDFKDYETDRRLFPHRALPSGRVKKKDLAIALSFIVAVSVLLNVLF-----MNNVGW-FLFL 121 (299)
T ss_pred HHHHHHHHHHHHHHhHHHHHHhhHHHhhhcCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHH-----HHHHHH-HHHH
Confidence 3445666778899999999999999999999999999999999999999999977777765443 111111 2344
Q ss_pred hHh-----cCcCCcccccccCchhHHHHHHHHHHHHHHHH--HHHH-HHHHHhcCCccccHHHHHHHHHHHHHHHHHHHh
Q 025718 170 GAY-----SIDLPPLLRWKGNPLMAAVTIISMNGLLLLFP--FFIH-FQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFV 241 (249)
Q Consensus 170 ~~Y-----S~~~P~p~~lKr~~~~~~l~v~~~~g~~~~~g--~~~~-~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~i~ 241 (249)
+.| +. ++||.++.||+.++...|..+..| ++.. +.....|.+ ......+++..+.++.++++|++
T Consensus 122 ~lY~~lm~a~------~~K~~~l~gNl~Va~ltg~~f~~g~~~~~~~fg~~~~g~~-~~~~~~~~l~l~afl~~l~rEI~ 194 (299)
T PRK13592 122 YIYGTLMSFW------FFKRDKIQNSLPLALVTHNPVMMILNLYTISFVCYKYNLP-LLSLPTVLLAFTMYFPSLIWEVC 194 (299)
T ss_pred HHHHHHHHHH------HHcccCCCcchhhhhhccchhhhchhhhhhhhhhhhcccc-hhhHHHHHHHHHHHHHHHHHHHH
Confidence 555 88 999999999999999999766444 2211 111122322 11221234456778889999999
Q ss_pred hCCCCc
Q 025718 242 KVTNSE 247 (249)
Q Consensus 242 kdi~Di 247 (249)
||+||.
T Consensus 195 KdieD~ 200 (299)
T PRK13592 195 RKIRAP 200 (299)
T ss_pred HhhcCC
Confidence 999994
No 34
>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase. This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.
Probab=99.91 E-value=2.2e-23 Score=186.82 Aligned_cols=146 Identities=21% Similarity=0.228 Sum_probs=113.1
Q ss_pred HHHHhhhcchhhHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCccCC--CCCcccC
Q 025718 50 DAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNK--PYLPLAC 127 (249)
Q Consensus 50 ~~~~~l~Rp~~~~~~~l~~~~g~~lA~~~~~~~~~~~l~~~l~~~l~~~l~~~a~~iiND~~D~e~D~ink--p~RPi~s 127 (249)
|+|+|++||+++..+.++++.|.++|.+.. ..++.. .+..+++++++++++|++|||+|+|+|++|+ |+||+|+
T Consensus 1 ~~~~~l~rp~~~~~~~~~~~~g~~la~~~~-~~~~~~---~~l~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl~s 76 (280)
T TIGR01473 1 KDYLQLTKPRIISLLLITAFAGMWLAPGGA-LVNPPL---LLLTLLGTTLAAASANAFNMYIDRDIDKKMKRTRNRPLVT 76 (280)
T ss_pred CchHHHccHHHHHHHHHHHHHHHHHhCCCC-CCCHHH---HHHHHHHHHHHHHHHHHHHhhcccCcCCCCCCCCCCCCCC
Confidence 468999999999999999999999985421 123322 2345788899999999999999999999964 7999999
Q ss_pred CCCChHHHHHHHHHHHHHHHHH-HHHhchHHHHHHHHHHHHHhhHhcCcCCcccccccCchhHHHHHHHHHHHHHHHHHH
Q 025718 128 GDFSMGEGLAITIASPLMAVAM-GIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPFF 206 (249)
Q Consensus 128 G~IS~~~A~~~~~~l~~~gl~l-~~~l~~~~l~l~~l~~~~l~~~YS~~~P~p~~lKr~~~~~~l~v~~~~g~~~~~g~~ 206 (249)
|++|+++|+.++.++.++|+.+ .+.+|+.+..++.+..+++.++||. .+||++.++++. +...|...+++.|
T Consensus 77 G~is~~~a~~~~~~~~~~g~~il~~~~~~~~~~l~~~~~~~~~~~Yt~------~lKr~~~~~~~v-~~~~g~~~~l~g~ 149 (280)
T TIGR01473 77 GRISPREALAFGLLLGVLGVAILAAFVNPLAALLGLFGIFFYVIVYTI------WLKRRTPQNTVI-GGFAGAVPPLIGW 149 (280)
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcCh------hhccCCchhHHH-HHHHHHHHHHHHH
Confidence 9999999999999999999884 4457877777666544345789986 699998876654 4444544444443
No 35
>PLN02809 4-hydroxybenzoate nonaprenyltransferase
Probab=99.91 E-value=2.4e-23 Score=187.42 Aligned_cols=186 Identities=16% Similarity=0.113 Sum_probs=132.2
Q ss_pred HHHHHHHHhhhcchhhHHHHHHH---HHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCccCC--
Q 025718 46 NKKCDAFYRLTRPYSCVSIIAAL---LSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNK-- 120 (249)
Q Consensus 46 ~~~l~~~~~l~Rp~~~~~~~l~~---~~g~~lA~~~~~~~~~~~l~~~l~~~l~~~l~~~a~~iiND~~D~e~D~ink-- 120 (249)
++++++|+|++|.+++.+..+.. ..+..++.......++.. .++..++.+++++++|++||++|||+|++|+
T Consensus 3 ~~~~~~y~~L~Rl~kp~~~~l~~~p~~~~~~l~a~~~~~~~~~~---l~l~~~g~~~~~~a~~~~Nd~~Dr~iD~~~~RT 79 (289)
T PLN02809 3 PPSLRPYAKLARLDKPIGTWLLAWPCMWSIALAAPPGSLPDLKM---LALFGCGALLLRGAGCTINDLLDRDIDKKVERT 79 (289)
T ss_pred chhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccCCCCcHHH---HHHHHHHHHHHHHHHHHHHhhHHhccccCCCCC
Confidence 36789999999999887776654 344455431101112222 2345788899999999999999999999863
Q ss_pred CCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhHhcCcCCcccccccCchhHHHHHHHHHHHH
Q 025718 121 PYLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLL 200 (249)
Q Consensus 121 p~RPi~sG~IS~~~A~~~~~~l~~~gl~l~~~l~~~~l~l~~l~~~~l~~~YS~~~P~p~~lKr~~~~~~l~v~~~~g~~ 200 (249)
|+||+|+|++|++||+.+..++.++++.+++.+|+.++.++.+. +++.+.| | .+||++.++++..+...++.
T Consensus 80 ~~RPL~sG~is~~~A~~~~~~~~~~~~~~~~~l~~~~~~l~~~~-~~~~~~Y----~---~~KR~t~~~~~~lg~~~~~~ 151 (289)
T PLN02809 80 KLRPIASGALTPFQGVGFLGAQLLLGLGILLQLNNYSRILGASS-LLLVFTY----P---LMKRFTFWPQAFLGLTFNWG 151 (289)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-HHHHHHH----h---HHHhcCcchHHHHHHHHHHH
Confidence 69999999999999999999999999999888888888777654 4667888 4 49999999997655554433
Q ss_pred HHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhhCCCCccC
Q 025718 201 LLFPFFIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEIE 249 (249)
Q Consensus 201 ~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~i~kdi~Di~~ 249 (249)
...|. .+..+..... ....+.....++..+.+++...+|+|+
T Consensus 152 ~l~g~------~av~g~~~~~-~~~~l~~~~~~W~~~~d~~ya~~D~e~ 193 (289)
T PLN02809 152 ALLGW------AAVKGSLDPA-VVLPLYASGVCWTLVYDTIYAHQDKED 193 (289)
T ss_pred HHHHH------HHHhCCCChH-HHHHHHHHHHHHHHHHHHHHHHhchhh
Confidence 33332 2223333222 222234455667878888888888874
No 36
>PRK12876 ubiA prenyltransferase; Reviewed
Probab=99.91 E-value=3.7e-23 Score=186.41 Aligned_cols=186 Identities=15% Similarity=0.109 Sum_probs=133.1
Q ss_pred HHHHHHHhhhcchh-hHHHHHHHHHHHHhcCC---CCCC---C-CHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCcc
Q 025718 47 KKCDAFYRLTRPYS-CVSIIAALLSVSLLPLQ---SPAD---F-TPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKV 118 (249)
Q Consensus 47 ~~l~~~~~l~Rp~~-~~~~~l~~~~g~~lA~~---~~~~---~-~~~~l~~~l~~~l~~~l~~~a~~iiND~~D~e~D~i 118 (249)
++++.|.+++|-++ .+...+ ...|+++|.. ...+ . ++. ..++..++.+.+++++|++||++|+|+|++
T Consensus 2 ~~~~~~~~~i~~~ht~Falpf-a~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~~~a~~~~Rsag~~~Nd~~DrdiD~~ 77 (300)
T PRK12876 2 MRIKYFQQLINCKYALFSALF-LSASTVFALSLPEISFSLFSLGGIK---TISLGGSAFFCARTVGIIVNQIIDCAIDKK 77 (300)
T ss_pred chHHHHHHHHHHHHHHHHHHH-HHHHHHHHhccccccCCCcCCCCHH---HHHHHHHHHHHHHHHHHHHHhHHHhcccCC
Confidence 46789999999855 555544 4678888841 0011 1 222 234567888999999999999999999999
Q ss_pred CC--CCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhHhcCcCCcccccccCchhHHHHHHHH
Q 025718 119 NK--PYLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISM 196 (249)
Q Consensus 119 nk--p~RPi~sG~IS~~~A~~~~~~l~~~gl~l~~~l~~~~l~l~~l~~~~l~~~YS~~~P~p~~lKr~~~~~~l~v~~~ 196 (249)
|+ |+||+|+|++|++||+.+...+.++++.++..+|+.+..++.+.. ++..+| | ++||++.++++..+..
T Consensus 78 ~~RT~~RPLpsG~is~~~A~~~~~~~~~~~~~l~~~ln~l~~~l~~~~~-~~~~iY----~---~~KR~t~~~~~vLGl~ 149 (300)
T PRK12876 78 NPRTSSRVLPAKLLSINFSMLLLTLCSFLFLSLCWLLNPLCFSLAVLST-LLMIIY----P---YTKRVTFLCHWILGLV 149 (300)
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-HHHHHH----H---hHhcCCchhHHHHHHH
Confidence 86 699999999999999999988888888888889999988887554 555788 4 5999999999776666
Q ss_pred HHHHHHHHHHHHHHHHHhcCCccccH--HHHHHHHHHHHHHHHHHHhhCCCCccC
Q 025718 197 NGLLLLFPFFIHFQKIVLGNPVAFTK--PVLFTAAYMVIWNAAIAFVKVTNSEIE 249 (249)
Q Consensus 197 ~g~~~~~g~~~~~~~~~~g~~~~~~~--~~~~~~~~~~l~~~~~~i~kdi~Di~~ 249 (249)
.+.....|+. + +.+.+..+.. ..++.+...+++..+.+++++.+|+|.
T Consensus 150 ~~~~~l~~~~-A----v~~~~~~~~l~~~~~lw~~~~~~~~~g~DiiYa~qD~e~ 199 (300)
T PRK12876 150 YYLAILMNFF-A----IIETPLSFSLFCMASLWGISFGMIIAANDIIYAIQDLEF 199 (300)
T ss_pred HHHHHHHHHH-H----HhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHhh
Confidence 5543333322 1 2232222211 223334556677778999999999884
No 37
>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=99.90 E-value=1.3e-22 Score=184.83 Aligned_cols=192 Identities=14% Similarity=0.068 Sum_probs=143.5
Q ss_pred HHHHHhhhcchhhHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCccC----CCCCc
Q 025718 49 CDAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVN----KPYLP 124 (249)
Q Consensus 49 l~~~~~l~Rp~~~~~~~l~~~~g~~lA~~~~~~~~~~~l~~~l~~~l~~~l~~~a~~iiND~~D~e~D~in----kp~RP 124 (249)
++.+++++||++....+++++.|..+|.....++++.. .+..+++++++++++|++|||+|.+.|+-+ +++|+
T Consensus 3 ~~~~~~~~Rp~tl~~s~~pvllG~a~a~~~~~~~~~~~---~ll~ll~~~~~~~~~N~~NDy~D~~~g~D~~~~~~~~~~ 79 (317)
T PRK13387 3 AKLFLKLVEIHTKIASFFPVILGTLFSLYVAKIFDWLL---FLAFMVAMLAFDIATTAINNYMDFKKALDTADYVGIGNG 79 (317)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCccHHH---HHHHHHHHHHHHHHHHHHHhHHHHhcCCCcccccCCcch
Confidence 67899999999999999999999988853223345432 334567888899999999999998754433 37899
Q ss_pred ccCCCCChHHHHHHHHHHHHHHHHH----HHHhchHHHHHHHHHHHHHhhHhcCcCCcccccccCchhHHHHHHHHHHHH
Q 025718 125 LACGDFSMGEGLAITIASPLMAVAM----GIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLL 200 (249)
Q Consensus 125 i~sG~IS~~~A~~~~~~l~~~gl~l----~~~l~~~~l~l~~l~~~~l~~~YS~~~P~p~~lKr~~~~~~l~v~~~~g~~ 200 (249)
+++|.+|+++++..+..+..++.++ .+..|...+.+++ .+++.++.||. | |+++||++ +|++.++..+|+.
T Consensus 80 i~~~~ls~~~v~~~~~~~~~ia~~~Gl~L~~~~g~~~l~igl-~g~~~~~~Yt~--g-P~~l~y~g-LGe~~v~i~~G~~ 154 (317)
T PRK13387 80 IGQHGLKPRNVLTVILLMYVVAAILGVYLCMNTSWLLLVIGL-ICFAIGILYTG--G-PLPLSRMP-LGEIFSGLTMGFG 154 (317)
T ss_pred hccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHH-HHHHHhhhhcC--C-CcccccCc-cHHHHHHHHHHHH
Confidence 9999999999999999998887774 4445555555554 45688999999 8 99999988 9999999999988
Q ss_pred HHHHHHHHHHHHHhcCC-c---------cccH----HHHHHHHHHHHHHHHHHHhhCCCCccC
Q 025718 201 LLFPFFIHFQKIVLGNP-V---------AFTK----PVLFTAAYMVIWNAAIAFVKVTNSEIE 249 (249)
Q Consensus 201 ~~~g~~~~~~~~~~g~~-~---------~~~~----~~~~~~~~~~l~~~~~~i~kdi~Di~~ 249 (249)
+..|.++. +++..... . .++. ..++.+.-.++...+++++||+||+||
T Consensus 155 ~v~g~~yv-~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~slp~g~l~~~ill~Nn~~D~e~ 216 (317)
T PRK13387 155 IFLLAVYI-NTNTITIESLLFQGEMFTIQGNLIAIIAIGVISLPIIFTIANIMLANNLRDLDE 216 (317)
T ss_pred HHHHHHHH-hcCCCchHHHHhcccchhhcchhHHHHHHHHHHHHHHHHHHHHHHhcCCccchh
Confidence 77777554 33211100 0 0000 112356677788888999999999996
No 38
>COG0109 CyoE Polyprenyltransferase (cytochrome oxidase assembly factor) [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=1.7e-22 Score=180.44 Aligned_cols=183 Identities=16% Similarity=0.223 Sum_probs=137.3
Q ss_pred HHHHHHHHHhhhcchhhHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCccCC--CC
Q 025718 45 LNKKCDAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNK--PY 122 (249)
Q Consensus 45 ~~~~l~~~~~l~Rp~~~~~~~l~~~~g~~lA~~~~~~~~~~~l~~~l~~~l~~~l~~~a~~iiND~~D~e~D~ink--p~ 122 (249)
..+++|+|++++||+....++++.+.|+++|.++ ..++.. .+.+.++..+..+++|++|+++|||+|++|+ ++
T Consensus 14 ~~~~~k~yl~LtKPrvi~L~~it~~~g~~lA~~~--~~~~~l---~~~~~~g~~L~a~~a~a~N~~~DrDID~~M~RT~~ 88 (304)
T COG0109 14 SRSTIKDYLQLTKPRVISLLLITAFAGMLLAPRG--SINPLL---LLLTLLGGALGAGGAGAFNMYIDRDIDALMERTRK 88 (304)
T ss_pred hHHHHHHHHHHhCCeeeehHHHHHHHHHHHcccc--cccHHH---HHHHHHHHHHHHHHHHHHhhhhhhhHHHhhhhccC
Confidence 5578999999999999999999999999999742 233332 3456789999999999999999999999974 69
Q ss_pred CcccCCCCChHHHHHHHHHHHHHHHHHH-HHhchHHHHHHHHHHHHHhhHhcCcCCcccccccCchhHHHHHHHHHHHHH
Q 025718 123 LPLACGDFSMGEGLAITIASPLMAVAMG-IMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLL 201 (249)
Q Consensus 123 RPi~sG~IS~~~A~~~~~~l~~~gl~l~-~~l~~~~l~l~~l~~~~l~~~YS~~~P~p~~lKr~~~~~~l~v~~~~g~~~ 201 (249)
||+|+|+++|+||+.++.++.++|+.+. +..|+.+..++++..+++..+||. ++||++...-+. +..-|...
T Consensus 89 RP~~~G~i~p~~al~fgl~L~~~g~~~l~~~vn~laa~l~~~gi~~Yv~vYT~------~lKR~T~~Nivi-Gg~aGa~P 161 (304)
T COG0109 89 RPLVTGLISPREALAFGLVLGVAGFSLLWFLVNLLAAVLGLFGIFFYVVVYTL------WLKRRTPQNIVI-GGFAGAMP 161 (304)
T ss_pred CCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh------hccCCcccceee-eecccccc
Confidence 9999999999999999999999999886 778998888888888899999999 999998665433 22323222
Q ss_pred HHHHHHHHHHHHhcCCccccHHHHHHHHHHH----HHHHHHHHhhCC
Q 025718 202 LFPFFIHFQKIVLGNPVAFTKPVLFTAAYMV----IWNAAIAFVKVT 244 (249)
Q Consensus 202 ~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~----l~~~~~~i~kdi 244 (249)
++..| .+..+.+.+..+.++...|+- ++.+++-..+|.
T Consensus 162 pliGw-----aAvtg~~~~~a~~Lf~IiF~WtPpHfwALAl~~~~DY 203 (304)
T COG0109 162 PLIGW-----AAVTGSISLGAILLFAIIFLWTPPHFWALALKYKDDY 203 (304)
T ss_pred cccee-----eeeeCCCCchHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 22222 233445555555554444332 344555444443
No 39
>PRK12871 ubiA prenyltransferase; Reviewed
Probab=99.87 E-value=4.9e-21 Score=173.12 Aligned_cols=184 Identities=15% Similarity=0.104 Sum_probs=116.2
Q ss_pred HHHHHHHhhhcchhhHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCccC-------
Q 025718 47 KKCDAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVN------- 119 (249)
Q Consensus 47 ~~l~~~~~l~Rp~~~~~~~l~~~~g~~lA~~~~~~~~~~~l~~~l~~~l~~~l~~~a~~iiND~~D~e~D~in------- 119 (249)
+++++|++++||++.......+..|.++|.......++..+ +..+++++++.+++|++|||+|+|.|++|
T Consensus 3 ~~~~~~~~l~Rp~~l~~~~~~~~~g~~lA~~~~g~~~~~~~---~l~~l~~~l~~~ag~~iND~~D~~~D~~~v~rtm~r 79 (297)
T PRK12871 3 ETLKAYIDLTRAHFLPAWPLLFCSGLVLAFANYGGFSWELT---IKAALIGLFGFEAGFVLNDYVDRKRDRLDVENTLTR 79 (297)
T ss_pred chHHHHHHHHhHHHHHHHHHHHHHHHHHHHHccCCCCHHHH---HHHHHHHHHHHHHHHHHhhHHHHhcCcchHhhhhhc
Confidence 46889999999998888877777888787311112333221 22244455555778999999999999864
Q ss_pred --C--CCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhchHHHHHH---HHHHHHHhhHhcCcCCcccccccCchh--HH
Q 025718 120 --K--PYLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIG---FIIWCIVGGAYSIDLPPLLRWKGNPLM--AA 190 (249)
Q Consensus 120 --k--p~RPi~sG~IS~~~A~~~~~~l~~~gl~l~~~l~~~~l~l~---~l~~~~l~~~YS~~~P~p~~lKr~~~~--~~ 190 (249)
| ++||+|+|++|+++|+.++.++.++|++++..++....... .+...+.++.| | .-||...+ +.
T Consensus 80 ~~~P~~~Rpl~sG~is~~~a~~~~i~l~~i~~~l~~~l~~~~~~~~~~l~~~~~~~~~~Y----~---~~kr~~~~p~~~ 152 (297)
T PRK12871 80 YWRPFKERPIPSGKLSSKNAFALFILLAAVTSALILTLPYPNSLYVFVIMLYSYGIEAFY----Q---VKKRNQKYPVAQ 152 (297)
T ss_pred cccCCCCCccCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----h---cccccccccHHH
Confidence 2 58999999999999999999999999888776554222111 12222444555 3 23332111 12
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhhCCCCccC
Q 025718 191 VTIISMNGLLLLFPFFIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEIE 249 (249)
Q Consensus 191 l~v~~~~g~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~i~kdi~Di~~ 249 (249)
+......+.. +++.+. . .+. .+...++...+.++++.+++.+||++|+|+
T Consensus 153 l~G~~~~~~~-~~~g~~-----~-~g~--~~~~~~ll~~~~~~w~~~~~~~~a~~D~e~ 202 (297)
T PRK12871 153 LLGRTDFTLF-PAAGYL-----C-YGQ--PDMTALLYMVFFYPWTMAHLGLNDFIDLEN 202 (297)
T ss_pred HHHHHHHHHH-HHHHHH-----H-hCC--CcHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 1111122222 222221 1 222 234445566788899999999999999986
No 40
>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase. This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.
Probab=99.86 E-value=1.8e-20 Score=168.40 Aligned_cols=177 Identities=15% Similarity=0.119 Sum_probs=136.2
Q ss_pred cchhhHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhccccc--cCccC--CCCCcccCCCCCh
Q 025718 57 RPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVH--IDKVN--KPYLPLACGDFSM 132 (249)
Q Consensus 57 Rp~~~~~~~l~~~~g~~lA~~~~~~~~~~~l~~~l~~~l~~~l~~~a~~iiND~~D~e--~D~in--kp~RPi~sG~IS~ 132 (249)
||+++...+.+++.|..+|... ..+++.. .+++++++++++.++|.+|||+|.+ .|+.+ +|+|++++|.+|+
T Consensus 1 Rp~tl~~s~~pv~lG~ala~~~-~~f~~~~---~ll~~~~~~~~q~~~N~~NDy~D~~~G~D~~~~~~~~r~i~~g~is~ 76 (284)
T TIGR00751 1 RPKTLPLAIAPIVAGTALAAWL-HAFVWLV---ALLALATAVLLQILSNYANDYGDGIKGSDTDDRIGPLRGVQKGLITP 76 (284)
T ss_pred CCchHHHHHHHHHHHHHHHHHc-CCccHHH---HHHHHHHHHHHHHHHHHHHhHHHHhcCCChhhccCCcchhcCCCCCH
Confidence 8999999999999999998542 2455432 3456788899999999999999985 47543 5899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHh----ch-----HHH-HHHHHHHHHHhhHhcCcCCcccccccCchhHHHHHHHHHHHHHH
Q 025718 133 GEGLAITIASPLMAVAMGIML----RS-----PPL-VIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLL 202 (249)
Q Consensus 133 ~~A~~~~~~l~~~gl~l~~~l----~~-----~~l-~l~~l~~~~l~~~YS~~~P~p~~lKr~~~~~~l~v~~~~g~~~~ 202 (249)
++++..+.++++++.+++.++ ++ +.+ .++ +.+++.++.||. | |+++|+++ +|++.++..+|++..
T Consensus 77 ~~v~~~~~~~~~~a~~~Gi~l~~~~~~~~~~~~~~l~lg-~~~~~~~~~Yt~--g-P~~l~y~g-LGE~~v~i~~G~l~v 151 (284)
T TIGR00751 77 REVKTALITSVALGALSGLVLALLAAPNLSDLFWFIALG-ALCIAAAITYTV--G-SKPYGYAG-LGDISVLVFFGPLAV 151 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHH-HHHHHHhHhhcC--C-CCccccCc-hHHHHHHHHHHHHHH
Confidence 999999998888766655432 32 133 344 345678899999 8 99999875 899999999999888
Q ss_pred HHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhhCCCCccC
Q 025718 203 FPFFIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEIE 249 (249)
Q Consensus 203 ~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~i~kdi~Di~~ 249 (249)
.|.++. +++ . ++...++.+.-.++.+.+++.+||++|+||
T Consensus 152 ~g~~yv-q~~----~--~~~~~ll~sl~~g~l~~~il~~Nn~~D~~~ 191 (284)
T TIGR00751 152 LGTQYL-QAH----R--VDWVGILPAVATGLLACAVLNINNLRDIPT 191 (284)
T ss_pred HHHHHH-hcC----C--CCHHHHHHHHHHHHHHHHHHHHcCcccchh
Confidence 887654 331 2 334445556667888899999999999996
No 41
>PLN02776 prenyltransferase
Probab=99.86 E-value=3.6e-20 Score=169.56 Aligned_cols=162 Identities=15% Similarity=0.067 Sum_probs=119.3
Q ss_pred hhcchhhHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCccCC--CCCcccCCCCCh
Q 025718 55 LTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNK--PYLPLACGDFSM 132 (249)
Q Consensus 55 l~Rp~~~~~~~l~~~~g~~lA~~~~~~~~~~~l~~~l~~~l~~~l~~~a~~iiND~~D~e~D~ink--p~RPi~sG~IS~ 132 (249)
++||+....++++.+.|+++|.++.. ++.. .++..++++++++++|++||++|+|+|++|+ ++||+|+|++|+
T Consensus 1 L~Kpri~~lv~~ta~~G~~lA~~~~~--~~~~---l~~~~lg~~l~~aaa~~~N~i~DrdiD~~m~RT~~RPLpsGris~ 75 (341)
T PLN02776 1 LSKARLSALVVATSGAGFVLGSGEAI--DLPG---LGWTCAGTMLCAASANTLNQVFEVKNDSKMKRTMRRPLPSGRISV 75 (341)
T ss_pred CCcchhHHHHHHHHHHHHHHhcCCCC--CHHH---HHHHHHHHHHHHHHHHHHHhHHhhhhcccCCCCCCCCCCCCCCCH
Confidence 57999999999999999999854322 3222 2345789999999999999999999999964 699999999999
Q ss_pred HHHHHHHHHHHHHHHHH-HHHhchHHHHHHHHHHHHHhhHhcCcCCcccccccCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 025718 133 GEGLAITIASPLMAVAM-GIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPFFIHFQK 211 (249)
Q Consensus 133 ~~A~~~~~~l~~~gl~l-~~~l~~~~l~l~~l~~~~l~~~YS~~~P~p~~lKr~~~~~~l~v~~~~g~~~~~g~~~~~~~ 211 (249)
++|+.++.++.++|+.+ ++++|+.+..++.+..+++...||. +||++.+. ..++...|..-+++.|.
T Consensus 76 ~~A~~~~~~l~~~g~~~l~~~~n~l~~~l~~~~~~ly~~vYt~-------lKR~t~~~-~~lG~~~Ga~ppL~Gw~---- 143 (341)
T PLN02776 76 PHAVAWAVVVGAAGVALLAYKTNMLTAGLGAGNILLYAFVYTP-------LKQIHPAN-TWVGAVVGAIPPLMGWA---- 143 (341)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh-------HccCCchh-HHHHHHHHHHHHHHHHH----
Confidence 99999999999999854 5668988888877655566778953 99999774 56666666443444433
Q ss_pred HHhcCCccccHHHHHHHHHHHHHHH
Q 025718 212 IVLGNPVAFTKPVLFTAAYMVIWNA 236 (249)
Q Consensus 212 ~~~g~~~~~~~~~~~~~~~~~l~~~ 236 (249)
+.++...+..++++ ..+++|..
T Consensus 144 -Avtg~~~~~~~~Lf--~~~~~Wq~ 165 (341)
T PLN02776 144 -AASGQLDAGAMVLA--AALYFWQM 165 (341)
T ss_pred -HHcCCCCHHHHHHH--HHHHHHHH
Confidence 33444444444433 34445544
No 42
>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=99.85 E-value=5.2e-20 Score=166.82 Aligned_cols=187 Identities=14% Similarity=0.095 Sum_probs=143.4
Q ss_pred HHHHHHHHhhhcchhhHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhccccc--cCccCCCCC
Q 025718 46 NKKCDAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVH--IDKVNKPYL 123 (249)
Q Consensus 46 ~~~l~~~~~l~Rp~~~~~~~l~~~~g~~lA~~~~~~~~~~~l~~~l~~~l~~~l~~~a~~iiND~~D~e--~D~inkp~R 123 (249)
.++++.+++.+||+++...+.+++.|..+|.....++++.. .++.++++++++.++|.+|||+|.+ .|+. ++ +
T Consensus 9 ~~~~~~w~~a~RP~tl~asl~pv~lG~a~a~~~~~~f~~~~---~ll~ll~~~l~q~~~N~~NDy~D~~~G~D~~-~~-~ 83 (304)
T PRK07419 9 PSRRKLWLAAIKPPMYSVAIMPILVGTAWALGETGVFRLDQ---FITFLLAAILILAWENLSNDVFDADTGIDKN-KF-H 83 (304)
T ss_pred ccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCCccHHH---HHHHHHHHHHHHHHHHHHHHHHHHhccCCcc-cc-c
Confidence 46688899999999999999999999999854223455432 3456788999999999999999987 7884 22 2
Q ss_pred cccCCCCChHHHHHHHHHHHHHHHHHHHH----hchHHHHHHHHHHHHHhhHhcCcCCcccccccCchhHHHHHHHHHHH
Q 025718 124 PLACGDFSMGEGLAITIASPLMAVAMGIM----LRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGL 199 (249)
Q Consensus 124 Pi~sG~IS~~~A~~~~~~l~~~gl~l~~~----l~~~~l~l~~l~~~~l~~~YS~~~P~p~~lKr~~~~~~l~v~~~~g~ 199 (249)
..+++..++++....+.++..++..++.+ .+++.+.+++ ++++.++.||. | |+++|+++ +|++.++..+|+
T Consensus 84 ~~~~~~~~~~~v~~~~~~~~~~a~~~Gl~L~~~~g~~~l~ig~-~g~~~~~~YT~--g-P~~l~y~g-LGE~~v~l~~G~ 158 (304)
T PRK07419 84 SVVNLTGNKSLVFWLANLFLLLGLLGILAIALQSDWTVLGLVL-LCCFLGYLYQG--P-PFRLGYQG-LGEPLCFLAFGP 158 (304)
T ss_pred CcccccCcHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHH-HHHHHhheccC--C-CcccCCCC-chHHHHHHHHHH
Confidence 34456668999998888888777665433 3444444444 55688999999 8 99999987 799999999999
Q ss_pred HHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhhCCCCccC
Q 025718 200 LLLFPFFIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEIE 249 (249)
Q Consensus 200 ~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~i~kdi~Di~~ 249 (249)
+...|.++. +++ .++...++.+..+++.+.++..+||++|+||
T Consensus 159 l~v~g~~yv-~t~------~~~~~~~~~sl~~gll~~~IL~~Nn~rD~e~ 201 (304)
T PRK07419 159 LAVAAALYS-QTP------SWSLIPLAASIILGLATSLILFCSHFHQVED 201 (304)
T ss_pred HHHHHHHHH-hcC------CCCHHHHHHHHHHHHHHHHHHHHcCCcchhh
Confidence 888888654 231 2444566677788899999999999999997
No 43
>PLN02922 prenyltransferase
Probab=99.85 E-value=1e-19 Score=165.65 Aligned_cols=190 Identities=15% Similarity=0.128 Sum_probs=140.9
Q ss_pred HHHHHHHhhhcchhhHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhccccc--cCccCC--CC
Q 025718 47 KKCDAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVH--IDKVNK--PY 122 (249)
Q Consensus 47 ~~l~~~~~l~Rp~~~~~~~l~~~~g~~lA~~~~~~~~~~~l~~~l~~~l~~~l~~~a~~iiND~~D~e--~D~ink--p~ 122 (249)
++++.+++.+||++....+.+++.|..+|......+++.. .+++++++++++.+.|.+|||+|.+ .|+.++ |.
T Consensus 13 ~~~~~w~~a~Rp~tl~~s~~pv~lG~a~A~~~~g~f~~~~---~ll~ll~~~l~q~~~N~~NDy~D~~~G~D~~~~~~~~ 89 (315)
T PLN02922 13 SRATLWWRAIKLPMYSVALVPLTVGAAAAYLQTGLFDARR---YGTLLLSSVLVITWLNLSNDAYDADTGVDKNKKESVV 89 (315)
T ss_pred cHHHHHHHHhCcchHHHHHHHHHHHHHHHHHcCCCccHHH---HHHHHHHHHHHHHHHHHHhhhhHhccCcCcccCCCCC
Confidence 5578899999999999999999999998854223455432 3456788999999999999999976 687543 33
Q ss_pred CcccCCCCChHHHHHHHHHHHHHHHHHHHHh-----chHHHHHHHHHHHHHhhHhcCcCCcccccccCchhHHHHHHHHH
Q 025718 123 LPLACGDFSMGEGLAITIASPLMAVAMGIML-----RSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMN 197 (249)
Q Consensus 123 RPi~sG~IS~~~A~~~~~~l~~~gl~l~~~l-----~~~~l~l~~l~~~~l~~~YS~~~P~p~~lKr~~~~~~l~v~~~~ 197 (249)
|++ | |+++.+..+..+.++++...+.+ +++.+.++ +.+++.++.||. | |+++|+++ +|++.++..+
T Consensus 90 ~~~--~--s~~~v~~~~~~~~~la~~g~~ll~~~~~~~~~l~iG-~~g~~~~~~Yt~--g-P~pl~y~g-LGE~~v~i~f 160 (315)
T PLN02922 90 NLV--G--SRRGVLAAAIGCLALGAAGLVWASLVAGNIRVILLL-AAAILCGYVYQC--P-PFRLSYKG-LGEPLCFAAF 160 (315)
T ss_pred Ccc--c--CHHHHHHHHHHHHHHHHHHHHHHHHHccChHHHHHH-HHHHHHHHHHhc--C-CcccccCc-chHHHHHHHH
Confidence 543 3 99999888888877766432221 33344444 456688999999 8 99999875 8999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCC-c---cccHHHHHHHHHHHHHHHHHHHhhCCCCccC
Q 025718 198 GLLLLFPFFIHFQKIVLGNP-V---AFTKPVLFTAAYMVIWNAAIAFVKVTNSEIE 249 (249)
Q Consensus 198 g~~~~~g~~~~~~~~~~g~~-~---~~~~~~~~~~~~~~l~~~~~~i~kdi~Di~~ 249 (249)
|.+...|.|+. +++..+.. . .++...++.++-.++.+.++..+||++|+||
T Consensus 161 G~l~v~g~y~~-~~~~~~~~~~~~~~~~~~~~l~slp~gll~~~iL~~Nn~rD~e~ 215 (315)
T PLN02922 161 GPLATTAFYLA-LASGAGGSEMAILPLTPTVLSASVLVGLTTTLILFCSHFHQIDG 215 (315)
T ss_pred HHHHHHHHHHH-hcccccccccccccccHHHHHHHHHHHHHHHHHHHHccCcchhh
Confidence 98877777654 33322111 1 2345567788888999999999999999997
No 44
>PRK13105 ubiA prenyltransferase; Reviewed
Probab=99.84 E-value=1.5e-19 Score=162.14 Aligned_cols=181 Identities=18% Similarity=0.128 Sum_probs=120.3
Q ss_pred HHHHHhhhcchhhHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHH-HHHHHHHHHhhhhccccccCccCCCCCcccC
Q 025718 49 CDAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVP-AIMMNNYANAINQLADVHIDKVNKPYLPLAC 127 (249)
Q Consensus 49 l~~~~~l~Rp~~~~~~~l~~~~g~~lA~~~~~~~~~~~l~~~l~~~l~-~~l~~~a~~iiND~~D~e~D~inkp~RPi~s 127 (249)
+|.+++++||++|+...+++..|+++|.+ .. ++.. ++..++ ....+.+-|.+|||+|+|.|+.|++++.. .
T Consensus 1 ~~~~~~~~rP~~wi~~a~pf~~g~~la~~-~~--~~~~----l~~~l~~~~~~n~am~~~Ndy~D~~~d~dn~r~~g~-~ 72 (282)
T PRK13105 1 IRQLLLSSRPISWINTAYPFAAAYLLAGG-EI--DWLF----VVGTVFFLIPYNLAMYGINDVFDYESDLRNPRKGGV-E 72 (282)
T ss_pred ChhHHHhcccHHHhccHHHHHHHHHHHCC-CC--ChHH----HHHHHHHHHHHHHHHHhhhhhhhhhcCCCCcccCCC-C
Confidence 36789999999999999998889999942 22 2211 112222 22233333566999999999998665443 5
Q ss_pred CCCChHHHHHHHHHHHHH-----HHHHHHHhchHHHHHHHHHHHHHhhHhcCcCCcccccccCchhHHHHHHHHHHHHHH
Q 025718 128 GDFSMGEGLAITIASPLM-----AVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLL 202 (249)
Q Consensus 128 G~IS~~~A~~~~~~l~~~-----gl~l~~~l~~~~l~l~~l~~~~l~~~YS~~~P~p~~lKr~~~~~~l~v~~~~g~~~~ 202 (249)
|.+|++|..........+ ++.+....+++.+.++. .+++..+.||. | |.++|++++.|+++.+..+.....
T Consensus 73 g~i~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~l~~-~ai~~~~~YS~--~-p~rlk~~gl~d~~t~~~~f~~~~v 148 (282)
T PRK13105 73 GAVLDRAMHRTTLWASVVTTVPFLVVLLAVGSWASGLVLA-VSVFAVVAYSA--P-GLRFKERPFLDSLTSSTHFVSPAL 148 (282)
T ss_pred CccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH-HHHHHHHHhcC--C-CccccccchHHHHHHHHHHHHHHH
Confidence 889999874443333333 33333333555555554 45588899999 8 999999999999755544433344
Q ss_pred HHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhhCCCCccC
Q 025718 203 FPFFIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEIE 249 (249)
Q Consensus 203 ~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~i~kdi~Di~~ 249 (249)
+|.+. .++. ++...++.+..+++++.+++++||+||+|.
T Consensus 149 ~G~~~------~~~~--~~~~~~l~~~~~~~~~~a~~ii~~irDie~ 187 (282)
T PRK13105 149 YGLVL------AGAP--FTAALWAVLAAFFLWGMASHAFGAVQDVVA 187 (282)
T ss_pred HHHHH------hhcc--ccHHHHHHHHHHHHHHHHHHHHHhCcchHh
Confidence 44432 1332 334456677788899999999999999984
No 45
>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]. These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane
Probab=99.83 E-value=5.6e-20 Score=160.77 Aligned_cols=144 Identities=23% Similarity=0.349 Sum_probs=117.4
Q ss_pred HHHHHHHHHHHHHhhhhccccccCcc--CCCCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhh
Q 025718 93 CMVPAIMMNNYANAINQLADVHIDKV--NKPYLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGG 170 (249)
Q Consensus 93 ~~l~~~l~~~a~~iiND~~D~e~D~i--nkp~RPi~sG~IS~~~A~~~~~~l~~~gl~l~~~l~~~~l~l~~l~~~~l~~ 170 (249)
..+++++.+.++|.+||+.|+|+|+. |||+||+++|++|++++..++.++.++++++++..++..+.+..+.. +.++
T Consensus 28 ~~l~~~~~~~~~~~~Nd~~D~~~D~~~~~~~~rPl~~g~i~~~~~~~~~~~~~~l~l~l~~~~~~~~~~~~~~~~-~~~~ 106 (257)
T PF01040_consen 28 GLLAVFLLQLAVYLLNDYFDYEEDRIHPNKPNRPLPSGRISPRQALIFALILLLLGLLLALLLGPWFLLILLLGF-LLGL 106 (257)
T ss_pred HHHHHHHHHHHHHHhhChhhhhcCcccccccCcchhHHHHhHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHH-HHHH
Confidence 45566689999999999999999999 89999999999999999999999999999998888887777766444 6669
Q ss_pred HhcCcCCcccccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhhCCCCccC
Q 025718 171 AYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPFFIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEIE 249 (249)
Q Consensus 171 ~YS~~~P~p~~lKr~~~~~~l~v~~~~g~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~i~kdi~Di~~ 249 (249)
+||. |+++||+++++++.++..++..+..|.+. .++. .+.+.++...+.+++..+....+|++|+||
T Consensus 107 ~Ys~----~~~lk~~~~~~~~~~~~~~~~~~~~~~~~------~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~ 173 (257)
T PF01040_consen 107 LYSP----PLRLKRRPLWGELVVALVFGLLILLGAYA------AGGD--PPPPPFLLAIFFFLLIFAIMFFNDIRDIEG 173 (257)
T ss_pred HHhh----hhhhcceeccchhhHHHhhhHhhhhhhhh------cCCc--ccHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 9984 88999999999999988887665555543 2222 244555566666788888899999999986
No 46
>PRK12872 ubiA prenyltransferase; Reviewed
Probab=99.83 E-value=2.8e-19 Score=160.24 Aligned_cols=186 Identities=17% Similarity=0.097 Sum_probs=125.0
Q ss_pred HHHHHHHhhhcchhhHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCccCCCCCccc
Q 025718 47 KKCDAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNKPYLPLA 126 (249)
Q Consensus 47 ~~l~~~~~l~Rp~~~~~~~l~~~~g~~lA~~~~~~~~~~~l~~~l~~~l~~~l~~~a~~iiND~~D~e~D~inkp~RPi~ 126 (249)
+-+++++++.|+.+......++..+..... ..+... ....+++.++.+.++|++||++|+|+|++|+|+||.+
T Consensus 2 ~~~~~~~~~~~~~~~~~a~~~~~l~~~~~~--~~~~~~-----~~~~~~~~~~~~~~~~~~N~~~D~~~D~~n~~~R~~~ 74 (285)
T PRK12872 2 KLLFAFLKLFRYGNLLIAALGQSLVYMASL--LLGLPI-----SWLLLLITFLIAAAVYIINYLTDLEEDIINKPERVVF 74 (285)
T ss_pred hHHHHHHHHHHHccHHHHHHHHHHHHHHHH--HHcChh-----HHHHHHHHHHHHHHHHHhhhhcCCchhhcCCCchHHH
Confidence 346889999999988887776554432210 011111 1234567788999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHHHH-HHHhchHHHHHHHHHHHHHhhHhcCcCCcccccccCchhHHHHHHHHHHHHHHHHH
Q 025718 127 CGDFSMGEGLAITIASPLMAVAM-GIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPF 205 (249)
Q Consensus 127 sG~IS~~~A~~~~~~l~~~gl~l-~~~l~~~~l~l~~l~~~~l~~~YS~~~P~p~~lKr~~~~~~l~v~~~~g~~~~~g~ 205 (249)
+++...+.+..+..+...+++.+ +...|+..+.++++. .+.++.||. |+..++||.|.++|+.++..+|....++.
T Consensus 75 s~~~~~~~~~~l~~i~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~Ys~--~~~~~lk~~p~~~~~~vg~~~g~~~~~~~ 151 (285)
T PRK12872 75 SETKAYGLFLLLNVLGLYLGAYLLAVIGGPKFALIFIIP-LILGILYSV--FFKRRLKRIPLFKNLVVSLLWALSPLILG 151 (285)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH-HHHHHHHhC--hhHHHHhhhhhHhhHHHHHHHHHHHHHHH
Confidence 55444444444333333344333 222366666666544 477999998 52226999999999999999887655544
Q ss_pred HHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhhCCCCccC
Q 025718 206 FIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEIE 249 (249)
Q Consensus 206 ~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~i~kdi~Di~~ 249 (249)
+.. .+. .++...++...++++...+++++||+||+|+
T Consensus 152 ~~~-----~~~--~~~~~~~~~~~~~fl~~~~~~~~~d~~D~e~ 188 (285)
T PRK12872 152 VYY-----YQL--TIFSLLLLYAVFIFLKSFIREIVFDIKDIEG 188 (285)
T ss_pred HHh-----ccc--ccchHHHHHHHHHHHHHHHHHHHHhcccchh
Confidence 332 111 1334455566777888899999999999985
No 47
>PRK12875 ubiA prenyltransferase; Reviewed
Probab=99.81 E-value=2.7e-18 Score=154.17 Aligned_cols=180 Identities=16% Similarity=0.254 Sum_probs=107.9
Q ss_pred HHHHHHHHhhhcchhhHHHHHHHHHHHHhcCCCCCC-CCHHHHHHHHHHHHHH--HHHHHHHHhhhhccccccCccCCCC
Q 025718 46 NKKCDAFYRLTRPYSCVSIIAALLSVSLLPLQSPAD-FTPKLIIEAFKCMVPA--IMMNNYANAINQLADVHIDKVNKPY 122 (249)
Q Consensus 46 ~~~l~~~~~l~Rp~~~~~~~l~~~~g~~lA~~~~~~-~~~~~l~~~l~~~l~~--~l~~~a~~iiND~~D~e~D~inkp~ 122 (249)
..+++.++++.||+++..+..+++.|..+|..+..+ +++.. . ++++. +..+...|++||++|+|+||.|+|+
T Consensus 5 ~~~~~~l~~l~RP~~~~~~~~p~l~G~~lA~~~~~~~~~~~~-~----~ll~~~~i~~Nl~~y~iND~~D~D~Dr~~prk 79 (282)
T PRK12875 5 GDRLRYLLVLSRPRFWLYLAGPVVVGVAYAADSVADLFSPAA-V----ALFAYFLFPANVFLYGVNDVFDADTDELNPKK 79 (282)
T ss_pred HHHHHHHHHHhCccchHHHHHHHHHHHHHHhccCcccccHHH-H----HHHHHHHHHHHHHHhcchhhhhhhccccCCCc
Confidence 467889999999999999999999999998653222 23211 1 11221 2344555678999999999998654
Q ss_pred ---Cccc-CCCCChHHHHHHHHH-HHHHHHHHHHHhchHHHHHHHHHHHHHhhHhcCcCCcccccccCchhHHHHHHHHH
Q 025718 123 ---LPLA-CGDFSMGEGLAITIA-SPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMN 197 (249)
Q Consensus 123 ---RPi~-sG~IS~~~A~~~~~~-l~~~gl~l~~~l~~~~l~l~~l~~~~l~~~YS~~~P~p~~lKr~~~~~~l~v~~~~ 197 (249)
||++ +| +.+.....+ ...+++.+....++..... .+.++++.+.||. | |+++|+++..+....+..
T Consensus 80 ~~~r~~~~s~----~~~~~~~~~l~~~l~l~l~~~~~~~~~~~-ll~~i~~~~~YS~--p-P~rlk~~p~~~~~~~g~~- 150 (282)
T PRK12875 80 DREREVRYRG----DRRVLVAVALSGALALAFLLVLPPAAWPA-LLAFLVLSVEYSA--P-PLRFKTTPVLDSLSNGLY- 150 (282)
T ss_pred cCCCCccHHH----HHHHHHHHHHHHHHHHHHHHHhhHHHHHH-HHHHHHHHHHHcC--C-CccchhccHHHHHHHHHH-
Confidence 4444 22 222222221 2233444433333332222 2345688899999 8 999999998776432211
Q ss_pred HHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhhCCCCccC
Q 025718 198 GLLLLFPFFIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEIE 249 (249)
Q Consensus 198 g~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~i~kdi~Di~~ 249 (249)
.....+.|.. ..+. .+.+.++.+ .+++..+++++||++|+|+
T Consensus 151 -~~~~~~~y~~-----~tg~--~~~~~l~~a--~~l~~~~~~~in~i~Die~ 192 (282)
T PRK12875 151 -ILPGVAAYAL-----VSGS--LPPLLAVAG--GWLWAMGMHTFSAIPDIEP 192 (282)
T ss_pred -HHHHHHHHHH-----HcCC--CcHHHHHHH--HHHHHHHHHHHHhccCHHH
Confidence 1111222221 1222 334444333 3588899999999999985
No 48
>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase. This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.
Probab=99.81 E-value=2.4e-18 Score=154.73 Aligned_cols=181 Identities=13% Similarity=0.070 Sum_probs=133.9
Q ss_pred HHhhhcchhhHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhccccc--cCccCCCCCcccCCC
Q 025718 52 FYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVH--IDKVNKPYLPLACGD 129 (249)
Q Consensus 52 ~~~l~Rp~~~~~~~l~~~~g~~lA~~~~~~~~~~~l~~~l~~~l~~~l~~~a~~iiND~~D~e--~D~inkp~RPi~sG~ 129 (249)
+++.+||++....+.+++.|..+|.....++++.. .+++++++++.+.++|.+|||+|.+ .|+.+. ....++.
T Consensus 2 w~~a~Rp~tl~~s~~pv~lG~alA~~~~~~f~~~~---~ll~li~~l~~q~~~N~~Ndy~D~~~G~D~~~~--~~~~~~~ 76 (285)
T TIGR02235 2 WLAAIKPPLYSVAVMPILVGTAVAWGQGGVFHLDR---FALFLIAAILILAWINLTNDVFDSDTGIDRFKL--HSIVNLT 76 (285)
T ss_pred hHHHhhhhHHHHHHHHHHHHHHHHHHcCCCcCHHH---HHHHHHHHHHHHHHHHHHHhHHHHhcCCCcccc--CCccccc
Confidence 56899999999999999999999854223455443 2345788899999999999999976 488532 1122333
Q ss_pred CChHHHHHHHHHHHHHHHHHHH----HhchHHHHHHHHHHHHHhhHhcCcCCcccccccCchhHHHHHHHHHHHHHHHHH
Q 025718 130 FSMGEGLAITIASPLMAVAMGI----MLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPF 205 (249)
Q Consensus 130 IS~~~A~~~~~~l~~~gl~l~~----~l~~~~l~l~~l~~~~l~~~YS~~~P~p~~lKr~~~~~~l~v~~~~g~~~~~g~ 205 (249)
.|+++....+.++..++..++. ..+++.+.++. .+++.++.||. | |+++|+++ +|++.++.++|++...|.
T Consensus 77 ~~~~~v~~~~~~~~~ia~~~g~~L~~~~~~~~l~lg~-~g~~~~~~Yt~--g-P~~l~y~g-LGE~~v~l~~G~l~v~g~ 151 (285)
T TIGR02235 77 GSRSLVFWLANFFLLIGLVGIAALSWRWQITVLALVG-LCCFLGYLYQG--P-PFRLGYQG-LGEPICWLCFGPLAIAAA 151 (285)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH-HHHHHHHhhcC--C-CcccCCCC-ccHHHHHHHHHHHHHHHH
Confidence 4678888877777777655443 33333334443 46688999999 8 99999876 799999999999888777
Q ss_pred HHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhhCCCCccC
Q 025718 206 FIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEIE 249 (249)
Q Consensus 206 ~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~i~kdi~Di~~ 249 (249)
++. +++ .++...++.+..+++.+.++..+||++|+||
T Consensus 152 ~yv-qt~------~~~~~~~l~sl~~gl~~~~iL~~Nn~rD~e~ 188 (285)
T TIGR02235 152 LYA-QSQ------SFSLIPWKASILVGLATTLILFCSHFHQVED 188 (285)
T ss_pred HHH-hCC------cCcHHHHHHHHHHHHHHHHHHHhcCCccchh
Confidence 654 331 2445566677888899999999999999997
No 49
>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]
Probab=99.79 E-value=5.9e-18 Score=151.64 Aligned_cols=188 Identities=16% Similarity=0.144 Sum_probs=143.4
Q ss_pred HHHHHHHhhhcchhhHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhccccc--cCc----cCC
Q 025718 47 KKCDAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVH--IDK----VNK 120 (249)
Q Consensus 47 ~~l~~~~~l~Rp~~~~~~~l~~~~g~~lA~~~~~~~~~~~l~~~l~~~l~~~l~~~a~~iiND~~D~e--~D~----ink 120 (249)
++.+.+++++|||++...+.+++.|..+|......+++ ...+++++++++++...|..|||+|.+ .|. ..+
T Consensus 6 ~~~~~wl~~~rP~Tl~aai~Pv~~G~a~A~~~~~~f~~---~~~ll~Li~~~~iq~~vN~~NdY~D~~KG~D~~g~~~~~ 82 (303)
T COG1575 6 SKTQLWLELARPKTLPAAIAPVIVGTALAFWYGKSFNL---LVALLALIAAILLQILVNLANDYFDYKKGTDTHGPDRLK 82 (303)
T ss_pred HHHHHHHHhcCccchHHHHHHHHHHHHHHHHHccchHH---HHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCcccc
Confidence 44588999999999999999999999998642222332 234567789999999999999999976 575 356
Q ss_pred CCCcccCCCCChHHHHHHHHHHHHHHHHHHH----HhchHHHHHHHHHHHHHhhHhcCcCCcccccccCchhHHHHHHHH
Q 025718 121 PYLPLACGDFSMGEGLAITIASPLMAVAMGI----MLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISM 196 (249)
Q Consensus 121 p~RPi~sG~IS~~~A~~~~~~l~~~gl~l~~----~l~~~~l~l~~l~~~~l~~~YS~~~P~p~~lKr~~~~~~l~v~~~ 196 (249)
.++-+.+.+++++..+.+.+.+...+.+++. ..+++.+.+++ .+++.++.||. + |+++++.+ +|++.++.+
T Consensus 83 ~~g~I~~~~~k~~~~l~l~l~~~~g~~llg~~~~~~s~~~~l~lG~-l~~~~g~~YTg--G-p~PlgY~g-LGEi~~~vf 157 (303)
T COG1575 83 QSGLIVRQSMKPALILSLALFLLAGLALLGVILAALSDWLVLLLGL-LCIAAGILYTG--G-PFPLGYMG-LGEIFVGVF 157 (303)
T ss_pred ccceeecccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-HHHHheeeecc--C-CcCcccCC-HHHHHHHHH
Confidence 6788888888999988888887776655433 23444344444 56688999999 8 89998765 999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhhCCCCccC
Q 025718 197 NGLLLLFPFFIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEIE 249 (249)
Q Consensus 197 ~g~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~i~kdi~Di~~ 249 (249)
+|++...|.|+. |++ .++...++.+...++.+..+...||++|+||
T Consensus 158 fG~l~v~g~~yi-qt~------~~~~~~ll~slp~gil~~~Il~aNNirDie~ 203 (303)
T COG1575 158 FGPLIVLGAYYI-QTG------RLSWAILLPSLPVGILIANILLANNLRDIEE 203 (303)
T ss_pred HHHHHHHHHHHH-hcc------cchHHHHHHHHHHHHHHHHHHHhcccccchh
Confidence 998877777654 332 1334566677888888899999999999997
No 50
>PRK13591 ubiA prenyltransferase; Provisional
Probab=99.79 E-value=5e-18 Score=153.13 Aligned_cols=138 Identities=15% Similarity=0.034 Sum_probs=99.5
Q ss_pred HHHHHHHHHHhhhhccccccCccCCCCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhHhcCc
Q 025718 96 PAIMMNNYANAINQLADVHIDKVNKPYLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSID 175 (249)
Q Consensus 96 ~~~l~~~a~~iiND~~D~e~D~inkp~RPi~sG~IS~~~A~~~~~~l~~~gl~l~~~l~~~~l~l~~l~~~~l~~~YS~~ 175 (249)
.+.+...++|++||++|+|+|++|+|+||.+ |++.++.++.+..++|+.+++..|.+. +++ ...+.++.||..
T Consensus 66 ~~~L~~~s~~~iNd~~D~eiD~IN~P~r~~~----s~~~a~~ls~la~llGl~La~~~g~~l--l~l-l~~l~g~lYS~G 138 (307)
T PRK13591 66 AGGLIIYSVYTLDRALDSEEDAVNRSELIGS----NKKIGLLVSLLAFLLGTYILAMDGMLL--LAF-LPFITGYLYSKG 138 (307)
T ss_pred HHHHHHHHHHHHhhhccchhhhccCcccccc----CHHHHHHHHHHHHHHHHHHHHHHhHHH--HHH-HHHHHHHHhcCC
Confidence 4456678889999999999999999999987 899999999999999999998877533 333 334678999962
Q ss_pred ---CCcccccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhhCCCCccC
Q 025718 176 ---LPPLLRWKGNPLMAAVTIISMNGLLLLFPFFIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEIE 249 (249)
Q Consensus 176 ---~P~p~~lKr~~~~~~l~v~~~~g~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~i~kdi~Di~~ 249 (249)
+|+|+++|+.+.+||+.++..+|..+..+. . . .... + ........+.....++++++||++|+|+
T Consensus 139 lk~~P~plklK~~~glGnl~V~i~~G~~i~g~~-g---~--~~~~--~-~~~~~i~l~~~~~l~~~~iindirDiEG 206 (307)
T PRK13591 139 IKIGKFALKLKGGLGVKNIVVGITWGGFIAGIA-G---S--YCGS--L-IPVGLIFLFFGVKLFINSCVYDFKDVKG 206 (307)
T ss_pred CCCCCccccccCCCchhHHHHHHHHHHHHHHHH-H---h--hhhh--H-HHHHHHHHHHHHHHHHHHHHHHhhhhHh
Confidence 267789999999999999999886432211 0 0 1101 0 1111112222233467889999999985
No 51
>KOG1381 consensus Para-hydroxybenzoate-polyprenyl transferase [Coenzyme transport and metabolism]
Probab=99.74 E-value=9.5e-19 Score=153.20 Aligned_cols=173 Identities=16% Similarity=0.173 Sum_probs=127.0
Q ss_pred hHHHHHHHHHHHHHhhhcchhhHHHHHHHH---HHHHhcCCCCCCCCHHHHHHHHH-HHHHHHHHHHHHHhhhhcccccc
Q 025718 40 SFMQVLNKKCDAFYRLTRPYSCVSIIAALL---SVSLLPLQSPADFTPKLIIEAFK-CMVPAIMMNNYANAINQLADVHI 115 (249)
Q Consensus 40 ~~~~~~~~~l~~~~~l~Rp~~~~~~~l~~~---~g~~lA~~~~~~~~~~~l~~~l~-~~l~~~l~~~a~~iiND~~D~e~ 115 (249)
++....+.++++|.|++|.+.++++.+... ...++|.. ....+ .. .++. .-.+.+++++++|+|||..|+|+
T Consensus 55 s~~~~~p~r~~pYaqLmRldkPiGTwLLywPCtWSIamaAd-ag~~p-~~--~mL~LFG~GAllMRgAGCtINDlwDkdl 130 (353)
T KOG1381|consen 55 SLVASSPKRWKPYAQLMRLDKPIGTWLLYWPCTWSIAMAAD-AGLLP-SI--KMLALFGVGALLMRGAGCTINDLWDKDL 130 (353)
T ss_pred hhhhcCCccchhHHHHHhcCCCceeeeeecchHHHHHhccC-CCccc-hh--HHHHHhcccHHHhccCCceehhhhhhhh
Confidence 455667788999999999999888876532 23344432 11121 11 1211 12578999999999999999999
Q ss_pred Ccc--CCCCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhHhcCcCCcccccccCchhHHHHH
Q 025718 116 DKV--NKPYLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTI 193 (249)
Q Consensus 116 D~i--nkp~RPi~sG~IS~~~A~~~~~~l~~~gl~l~~~l~~~~l~l~~l~~~~l~~~YS~~~P~p~~lKr~~~~~~l~v 193 (249)
|++ +.+.||++||++|+++|+.+..+...+|+.+...+|..+..++. .++...+.| | ..||.++++++
T Consensus 131 D~KVeRtklRPlAsG~ls~~qaI~fL~~ql~~gLgiLlqLn~ysi~lg~-~sl~~v~~y----p---l~kr~TY~pq~-- 200 (353)
T KOG1381|consen 131 DAKVERTKLRPLASGSLSPRQAIGFLGAQLSLGLGILLQLNWYSIALGA-SSLALVITY----P---LMKRFTYWPQL-- 200 (353)
T ss_pred hhhHhhhcccccccCCcchhHHHHHHHHHHHHhHHHHHhccHHHHHhcc-cccccEEEe----e---hhhhcchhHHH--
Confidence 997 35799999999999999999999999999998889988877764 455666777 6 79999999995
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCccccH--HHHHHHHH
Q 025718 194 ISMNGLLLLFPFFIHFQKIVLGNPVAFTK--PVLFTAAY 230 (249)
Q Consensus 194 ~~~~g~~~~~g~~~~~~~~~~g~~~~~~~--~~~~~~~~ 230 (249)
+.|+.+++|..+. +.+.++....+. |+.+.+..
T Consensus 201 --vLgltfnwGAllG--w~A~~g~~~~s~~~plYls~v~ 235 (353)
T KOG1381|consen 201 --VLGLTFNWGALLG--WCALKGSLSPSAVLPLYLSGVC 235 (353)
T ss_pred --HHhhhcchhhhhc--chhhcCccChhhhhHHHHhhhh
Confidence 4566778888765 566776654433 44444433
No 52
>KOG1380 consensus Heme A farnesyltransferase [Coenzyme transport and metabolism]
Probab=99.32 E-value=6e-13 Score=119.42 Aligned_cols=143 Identities=17% Similarity=0.168 Sum_probs=114.7
Q ss_pred HHHHHHHhhhcchhhHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCccCC--CCCc
Q 025718 47 KKCDAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNK--PYLP 124 (249)
Q Consensus 47 ~~l~~~~~l~Rp~~~~~~~l~~~~g~~lA~~~~~~~~~~~l~~~l~~~l~~~l~~~a~~iiND~~D~e~D~ink--p~RP 124 (249)
..++.|+||.||+....++++...|+.+|.+. +++.. +++..+|+.+.++++|.+||+++.+.|++|+ +.||
T Consensus 92 k~~~~y~eLsK~rLT~LVV~tt~~gYalap~p---~s~~~---l~~~tvGT~L~S~sANaiNQ~~E~~~DsqM~RT~~Rp 165 (409)
T KOG1380|consen 92 KYARCYLELSKPRLTMLVVLTTMTGYALAPGP---FSFPT---LLYTTVGTGLCSASANAINQIFEPPFDSQMKRTQNRP 165 (409)
T ss_pred chHHHHHHhcccceEEEEeeeccccccccccC---CCcch---hHHHhhhhHHHHhhhHhhhhhccCCchhhhHhhcccc
Confidence 45789999999998888888888898888642 33322 2345789999999999999999999999975 6899
Q ss_pred ccCCCCChHHHHHHHHHHHHHHHHHHHH-hchHHHHHHHHHHHHHhhHhcCcCCcccccccCchhHHHHHHHHHHHHHHH
Q 025718 125 LACGDFSMGEGLAITIASPLMAVAMGIM-LRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLF 203 (249)
Q Consensus 125 i~sG~IS~~~A~~~~~~l~~~gl~l~~~-l~~~~l~l~~l~~~~l~~~YS~~~P~p~~lKr~~~~~~l~v~~~~g~~~~~ 203 (249)
+++|++||..|..++.+....|+.+.++ +|+.+..++..-.+++..+|+- +||.. +.|=.++.+.|.+.++
T Consensus 166 lv~g~isp~hA~~fAt~~g~~G~slL~~gvNpl~a~Lga~Ni~LY~~vYTP-------lKrih-iinTWvGavVGAIPPL 237 (409)
T KOG1380|consen 166 LVRGRISPLHAVTFATLTGTAGVSLLAFGVNPLAAALGAGNIFLYAGVYTP-------LKRIH-IINTWVGAVVGAIPPL 237 (409)
T ss_pred cccCccChHHHHHHHHHhccccceeeeecccHHHHHHhhcchheeeccccc-------hhhhh-hhhhHHHHHhccCCcc
Confidence 9999999999999999999999877544 8888888887667788999974 99865 5555566666665443
No 53
>KOG4581 consensus Predicted membrane protein [Function unknown]
Probab=97.69 E-value=3.7e-06 Score=73.01 Aligned_cols=148 Identities=16% Similarity=0.130 Sum_probs=103.3
Q ss_pred HHHHHHHhhhcchhhHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhcccc--ccCccCCCCCc
Q 025718 47 KKCDAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADV--HIDKVNKPYLP 124 (249)
Q Consensus 47 ~~l~~~~~l~Rp~~~~~~~l~~~~g~~lA~~~~~~~~~~~l~~~l~~~l~~~l~~~a~~iiND~~D~--e~D~inkp~RP 124 (249)
++.+.|+...||+.....+.++..|..+|+.+...-++... ...++..+.+..+.++|+.|.|+|. .+|++..-+|-
T Consensus 59 ~k~~syllalrpws~sasl~p~~lgsalayrs~~~~d~~l~-~~fl~a~avlavh~agnlvntyfdf~kgid~kkaddrt 137 (359)
T KOG4581|consen 59 MKCASYLLALRPWSFSASLTPTALGSALAYRSHGAEDFRLA-TFFLCAFAVLAVHCAGNLVNTYFDFIKGIDHKKADDRT 137 (359)
T ss_pred HHHHHHHhhhcccccccccchHhhhhHHHHhhccccchhHH-HHHHHHhhheeeecccchhhhhhhhhhccccccccchh
Confidence 67788999999999999999999999999753221222222 2223345556678999999999996 58988888999
Q ss_pred ccCCCCChHHHHHHHHHHHHHHHHH---HHHhchHHH---HHHHHHHHHHhhHhcCcCCcccccccCchhHHHHHHHHHH
Q 025718 125 LACGDFSMGEGLAITIASPLMAVAM---GIMLRSPPL---VIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNG 198 (249)
Q Consensus 125 i~sG~IS~~~A~~~~~~l~~~gl~l---~~~l~~~~l---~l~~l~~~~l~~~YS~~~P~p~~lKr~~~~~~l~v~~~~g 198 (249)
++...+.+.+...++..+.-.|... ...+++.-+ .+..+.++--.+.|+. -+-+|.. -+|.+++.+.+|
T Consensus 138 lvd~il~~~dvv~~g~~ly~~gc~~~~~l~~lsp~klehlaliyfggls~sflytg----gigfkyi-algdliili~fg 212 (359)
T KOG4581|consen 138 LVDHILEKDDVVRFGAFLYMAGCGCAACLAVLSPAKLEHLALIYFGGLSGSFLYTG----GIGFKYI-ALGDLIILILFG 212 (359)
T ss_pred HHHHhcChhheehhhHHHHHhcchHHHHHHhCCHhhhhhhhhhhccCcccceeEec----ccceEEE-eccCEEEEEeec
Confidence 9999999999999999887775443 334555432 2222233344578887 3457754 477777667777
Q ss_pred HH
Q 025718 199 LL 200 (249)
Q Consensus 199 ~~ 200 (249)
.+
T Consensus 213 pi 214 (359)
T KOG4581|consen 213 PI 214 (359)
T ss_pred hH
Confidence 54
No 54
>PRK13591 ubiA prenyltransferase; Provisional
Probab=94.31 E-value=0.18 Score=46.04 Aligned_cols=66 Identities=18% Similarity=0.302 Sum_probs=38.9
Q ss_pred hhhhccccccCccC-CCCCcccCCCCChHHHHHHHHHHHHHH---HHHHHHh---c--hHHHHHHHHHHHHHhhHhcC
Q 025718 106 AINQLADVHIDKVN-KPYLPLACGDFSMGEGLAITIASPLMA---VAMGIML---R--SPPLVIGFIIWCIVGGAYSI 174 (249)
Q Consensus 106 iiND~~D~e~D~in-kp~RPi~sG~IS~~~A~~~~~~l~~~g---l~l~~~l---~--~~~l~l~~l~~~~l~~~YS~ 174 (249)
++||+.|+|.||.+ ++.-|+.=|+= .+..+...+.+.+ .+.+... . +...+.+++..++..+.||.
T Consensus 197 iindirDiEGDr~~G~kTLPV~lG~~---~A~~l~~~l~~~~~l~li~~~~~g~l~~~~~~~~~s~~~~l~~~~~~~~ 271 (307)
T PRK13591 197 CVYDFKDVKGDTLAGIKTLPVSLGEQ---KTRNLLLGIHLFSHLVLGIALIFGVIAFEPIILLYSFVCGLICIQVYSS 271 (307)
T ss_pred HHHHhhhhHhHHHcCCeeEEEEECHH---HHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHcC
Confidence 67999999999997 57888866643 3333333332222 1122222 2 33344455555678889998
No 55
>PRK12872 ubiA prenyltransferase; Reviewed
Probab=92.91 E-value=0.44 Score=42.51 Aligned_cols=43 Identities=16% Similarity=0.249 Sum_probs=28.6
Q ss_pred HHHHHHHhhhhccccccCccC-CCCCcccCCCCChHHHHHHHHHHHH
Q 025718 99 MMNNYANAINQLADVHIDKVN-KPYLPLACGDFSMGEGLAITIASPL 144 (249)
Q Consensus 99 l~~~a~~iiND~~D~e~D~in-kp~RPi~sG~IS~~~A~~~~~~l~~ 144 (249)
+....-.++||..|+|.||.+ .|.-|..=|+ +.+..+...+.+
T Consensus 172 l~~~~~~~~~d~~D~e~D~~~G~~Tlpv~lG~---~~t~~~~~~~~~ 215 (285)
T PRK12872 172 LKSFIREIVFDIKDIEGDRKSGLKTLPIVLGK---ERTLKFLLILNL 215 (285)
T ss_pred HHHHHHHHHHhcccchhHHHcCCcccchhcch---HHHHHHHHHHHH
Confidence 344455588999999999985 5788887776 444444444333
No 56
>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=92.33 E-value=0.55 Score=43.09 Aligned_cols=48 Identities=19% Similarity=0.101 Sum_probs=31.5
Q ss_pred HHHHHHHHHhhhhccccccCccC-CCCCcccCCCCChHHHHHHHHHHHHHHH
Q 025718 97 AIMMNNYANAINQLADVHIDKVN-KPYLPLACGDFSMGEGLAITIASPLMAV 147 (249)
Q Consensus 97 ~~l~~~a~~iiND~~D~e~D~in-kp~RPi~sG~IS~~~A~~~~~~l~~~gl 147 (249)
..+..+.....||+.|+|.||.+ |++-|.-=| ++.+..+...+...+.
T Consensus 198 ~g~l~~~ill~Nn~~D~e~D~~~gk~TL~v~lG---~~~a~~l~~~l~~~a~ 246 (317)
T PRK13387 198 IIFTIANIMLANNLRDLDEDIKNHRYTLVYYIG---REKGVVLFAILFYASY 246 (317)
T ss_pred HHHHHHHHHHhcCCccchhHHHcCCeeeeeeEc---HHhHHHHHHHHHHHHH
Confidence 34445556788999999999996 567776444 5555555555544433
No 57
>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase. A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.
Probab=91.22 E-value=4.3 Score=36.28 Aligned_cols=33 Identities=18% Similarity=0.131 Sum_probs=24.9
Q ss_pred HHHHHHHHHhhhhccccccCccC-CCCCcccCCC
Q 025718 97 AIMMNNYANAINQLADVHIDKVN-KPYLPLACGD 129 (249)
Q Consensus 97 ~~l~~~a~~iiND~~D~e~D~in-kp~RPi~sG~ 129 (249)
.++-+.+-..+||..|+|.|+.. .|.-|+.-|+
T Consensus 167 ~~~w~~~~~~i~~~~D~e~D~~~G~~tlpv~~G~ 200 (282)
T TIGR01475 167 VGFWIAGFDLIYAIQDYEFDRKNGLHSIPARFGI 200 (282)
T ss_pred HHHHHHHHHHHHHHhhHHhHHHcCCCchHHHhch
Confidence 34444555679999999999874 6888888884
No 58
>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]
Probab=90.85 E-value=1.3 Score=40.39 Aligned_cols=48 Identities=17% Similarity=0.140 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHhhhhccccccCccCCC-CCcccCCCCChHHHHHHHHHHHHH
Q 025718 95 VPAIMMNNYANAINQLADVHIDKVNKP-YLPLACGDFSMGEGLAITIASPLM 145 (249)
Q Consensus 95 l~~~l~~~a~~iiND~~D~e~D~inkp-~RPi~sG~IS~~~A~~~~~~l~~~ 145 (249)
+.+....+..+..|++.|.|.|++|+| .-|+ |+..+.+..+...+...
T Consensus 183 lp~gil~~~Il~aNNirDie~D~~~gk~TLav---rLG~~~~~~l~~~l~~~ 231 (303)
T COG1575 183 LPVGILIANILLANNLRDIEEDIRNGKYTLAV---RLGRKNARKLYAALLVV 231 (303)
T ss_pred HHHHHHHHHHHHhcccccchhHHhcCCcceee---eeccHhHHHHHHHHHHH
Confidence 344445666677899999999999865 4444 34444454444444433
No 59
>PRK13105 ubiA prenyltransferase; Reviewed
Probab=90.69 E-value=1.1 Score=40.63 Aligned_cols=52 Identities=12% Similarity=0.107 Sum_probs=38.9
Q ss_pred HHHHHHhhhhccccccCccC-CCCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhc
Q 025718 100 MNNYANAINQLADVHIDKVN-KPYLPLACGDFSMGEGLAITIASPLMAVAMGIMLR 154 (249)
Q Consensus 100 ~~~a~~iiND~~D~e~D~in-kp~RPi~sG~IS~~~A~~~~~~l~~~gl~l~~~l~ 154 (249)
...+..++||+-|.|.||.+ +++=|. ++.++.+..++..+.+++.++...++
T Consensus 172 ~~~a~~ii~~irDie~Dr~~G~~Tlpv---~lG~~~a~~~~~~l~~~a~~~~~~~~ 224 (282)
T PRK13105 172 WGMASHAFGAVQDVVADREAGIASIAT---VLGARRTVRLAVGLYAAAAVLMLALP 224 (282)
T ss_pred HHHHHHHHHhCcchHhHHHcCCccchH---HhcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36666799999999999986 566665 56678888888888777766544433
No 60
>PLN02922 prenyltransferase
Probab=90.35 E-value=1.3 Score=40.54 Aligned_cols=44 Identities=11% Similarity=0.093 Sum_probs=29.3
Q ss_pred HHHHHHHhhhhccccccCccC-CCCCcccCCCCChHHHHHHHHHHHHH
Q 025718 99 MMNNYANAINQLADVHIDKVN-KPYLPLACGDFSMGEGLAITIASPLM 145 (249)
Q Consensus 99 l~~~a~~iiND~~D~e~D~in-kp~RPi~sG~IS~~~A~~~~~~l~~~ 145 (249)
+..+.....||+-|+|.||++ |++-|.-=| ++.+..+...+...
T Consensus 199 ll~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG---~~~a~~l~~~l~~~ 243 (315)
T PLN02922 199 LTTTLILFCSHFHQIDGDRAVGKMSPLVRLG---TEKGSRVVRWAVLL 243 (315)
T ss_pred HHHHHHHHHccCcchhhHHHcCccceeeEEC---hHHHHHHHHHHHHH
Confidence 345566778999999999997 566776444 45555444444443
No 61
>PLN00012 chlorophyll synthetase; Provisional
Probab=90.21 E-value=1.4 Score=41.52 Aligned_cols=31 Identities=19% Similarity=0.230 Sum_probs=24.7
Q ss_pred HHHHHHHhhhhccccccCccC-CCCCcccCCC
Q 025718 99 MMNNYANAINQLADVHIDKVN-KPYLPLACGD 129 (249)
Q Consensus 99 l~~~a~~iiND~~D~e~D~in-kp~RPi~sG~ 129 (249)
+...+-...||+-|+|.||+. +|.-|+.-|+
T Consensus 263 l~~lai~ivnd~~Die~Dr~aG~~TLpV~~G~ 294 (375)
T PLN00012 263 IAGLGIAIVNDFKSIEGDRALGLQSLPVAFGV 294 (375)
T ss_pred HHHHHHHHHhhhcchhhHHHcCCcccceeech
Confidence 345556678999999999985 7888987776
No 62
>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=90.15 E-value=1.3 Score=40.51 Aligned_cols=44 Identities=11% Similarity=-0.007 Sum_probs=28.9
Q ss_pred HHHHHHHhhhhccccccCccC-CCCCcccCCCCChHHHHHHHHHHHHH
Q 025718 99 MMNNYANAINQLADVHIDKVN-KPYLPLACGDFSMGEGLAITIASPLM 145 (249)
Q Consensus 99 l~~~a~~iiND~~D~e~D~in-kp~RPi~sG~IS~~~A~~~~~~l~~~ 145 (249)
+..+.....||+-|+|.||.+ |++-|.-=| ++.+..+...+...
T Consensus 185 ll~~~IL~~Nn~rD~e~D~~~Gk~TL~v~lG---~~~a~~ly~~l~~~ 229 (304)
T PRK07419 185 LATSLILFCSHFHQVEDDLAAGKRSPIVRLG---TKRGAQLLPWIVGL 229 (304)
T ss_pred HHHHHHHHHcCCcchhhHHHcCCcceeeeec---hHhHHHHHHHHHHH
Confidence 345566678999999999996 667776444 45554444444443
No 63
>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated
Probab=89.48 E-value=3.7 Score=36.84 Aligned_cols=46 Identities=20% Similarity=0.203 Sum_probs=29.6
Q ss_pred HHHHHHHhhhhccccccCccC-CCCCcccCCCCChHHHHHHHHHHHHHHH
Q 025718 99 MMNNYANAINQLADVHIDKVN-KPYLPLACGDFSMGEGLAITIASPLMAV 147 (249)
Q Consensus 99 l~~~a~~iiND~~D~e~D~in-kp~RPi~sG~IS~~~A~~~~~~l~~~gl 147 (249)
+........||+.|+|.||.+ +++-|.-=| .+.+..+...+..++.
T Consensus 179 l~~~~~~~~n~~~D~~~D~~~G~~Tl~v~lG---~~~a~~~~~~l~~~~~ 225 (293)
T PRK06080 179 LLIGAVLLANNIRDIETDRENGKNTLAVRLG---DKNARRLHAALLALAY 225 (293)
T ss_pred HHHHHHHHhcCCCcchhHHHcCCeeEEeeEC---cHhHHHHHHHHHHHHH
Confidence 345555678999999999986 566666444 4555555544444433
No 64
>PRK12392 bacteriochlorophyll c synthase; Provisional
Probab=88.94 E-value=1.4 Score=40.66 Aligned_cols=34 Identities=21% Similarity=0.151 Sum_probs=24.9
Q ss_pred HHHHHHHHhhhhccccccCccC-CCCCcccCCCCC
Q 025718 98 IMMNNYANAINQLADVHIDKVN-KPYLPLACGDFS 131 (249)
Q Consensus 98 ~l~~~a~~iiND~~D~e~D~in-kp~RPi~sG~IS 131 (249)
++...+-..+||+.|+|.||.. +++-|+.=|+=.
T Consensus 190 ~l~~~~~~~i~d~~D~egD~~~G~kTlpV~~G~~~ 224 (331)
T PRK12392 190 FFMAIALIIMNDFKSVEGDKEGGLKSLTVMIGAKN 224 (331)
T ss_pred HHHHHHHHHHHcccchhhHHHcCCeeeEeEEcHhh
Confidence 3445555678999999999985 678888666443
No 65
>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed
Probab=88.08 E-value=2.1 Score=39.12 Aligned_cols=29 Identities=21% Similarity=0.271 Sum_probs=23.0
Q ss_pred HHHHHhhhhccccccCccC-CCCCcccCCC
Q 025718 101 NNYANAINQLADVHIDKVN-KPYLPLACGD 129 (249)
Q Consensus 101 ~~a~~iiND~~D~e~D~in-kp~RPi~sG~ 129 (249)
..+....||+.|+|.||.. +|.-|+.-|+
T Consensus 202 ~~~~~~~~d~~D~e~D~~aG~~Tlpv~~G~ 231 (314)
T PRK07566 202 AHGIMTLNDFKSVEGDRQLGLRSLPVVFGE 231 (314)
T ss_pred HHHHHHHHHHHHhHhHHHcCCcccceeEcH
Confidence 4444678999999999985 6888887765
No 66
>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial. A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.
Probab=87.95 E-value=2.4 Score=37.99 Aligned_cols=36 Identities=19% Similarity=0.092 Sum_probs=26.9
Q ss_pred HHHHHHHHHHhhhhccccccCccC-CCCCcccCCCCC
Q 025718 96 PAIMMNNYANAINQLADVHIDKVN-KPYLPLACGDFS 131 (249)
Q Consensus 96 ~~~l~~~a~~iiND~~D~e~D~in-kp~RPi~sG~IS 131 (249)
+.++-+.+-..+|++.|+|.||.. .|.-|+.-|+-+
T Consensus 168 ~~~lw~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~~ 204 (281)
T TIGR01474 168 ANILWTLGYDTIYAMQDKEDDIKIGVKSTALRFGDNT 204 (281)
T ss_pred HHHHHHHHHHHHHHHhhHHhHHHcCCCcccHHhhhhh
Confidence 344445556678999999999985 688888888543
No 67
>PRK13106 ubiA prenyltransferase; Reviewed
Probab=87.81 E-value=3.5 Score=37.56 Aligned_cols=40 Identities=13% Similarity=0.198 Sum_probs=27.2
Q ss_pred HHHHHHHHHHhhhhccccccCccC-CCCCcccCCCCChHHH
Q 025718 96 PAIMMNNYANAINQLADVHIDKVN-KPYLPLACGDFSMGEG 135 (249)
Q Consensus 96 ~~~l~~~a~~iiND~~D~e~D~in-kp~RPi~sG~IS~~~A 135 (249)
+.++-+.+-.++|+..|+|.|+.. .|+-|+-=|+-+.+-+
T Consensus 185 ~~~lw~~~~d~iya~~D~e~D~~~Gi~Slpv~~G~~a~~~~ 225 (300)
T PRK13106 185 GTILWAAGFDLYNHIPDAEFDREMGLHSFAVVLGKWALTFA 225 (300)
T ss_pred HHHHHHHHHHHHHHccchhhHHHCCCCccHHHHhhhHHHHH
Confidence 334445555688999999999875 5788887774443333
No 68
>PRK12875 ubiA prenyltransferase; Reviewed
Probab=87.78 E-value=8 Score=34.89 Aligned_cols=50 Identities=14% Similarity=0.070 Sum_probs=33.9
Q ss_pred HHHHHHHHHhhhhccccccCccC-CCCCcccCCCCChHHHHHHHHHHHHHHHHH
Q 025718 97 AIMMNNYANAINQLADVHIDKVN-KPYLPLACGDFSMGEGLAITIASPLMAVAM 149 (249)
Q Consensus 97 ~~l~~~a~~iiND~~D~e~D~in-kp~RPi~sG~IS~~~A~~~~~~l~~~gl~l 149 (249)
..+...+...+||+.|+|.||+. +++-|. ++..+.+..+..++..++.++
T Consensus 174 ~~l~~~~~~~in~i~Die~D~~aGi~Tlav---~lG~~~a~~~~~~~~~~a~~~ 224 (282)
T PRK12875 174 GWLWAMGMHTFSAIPDIEPDRAAGIRTTAT---VLGERRTYAYCAACWLLAAAA 224 (282)
T ss_pred HHHHHHHHHHHHhccCHHHHHHcCCccchh---hccHhhHHHHHHHHHHHHHHH
Confidence 34445555788999999999985 667776 444566666666665555444
No 69
>TIGR02056 ChlG chlorophyll synthase, ChlG. This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).
Probab=87.48 E-value=2.9 Score=38.04 Aligned_cols=41 Identities=20% Similarity=0.194 Sum_probs=27.8
Q ss_pred HHHHHHHhhhhccccccCccC-CCCCcccCCCCChHHHHHHHHHH
Q 025718 99 MMNNYANAINQLADVHIDKVN-KPYLPLACGDFSMGEGLAITIAS 142 (249)
Q Consensus 99 l~~~a~~iiND~~D~e~D~in-kp~RPi~sG~IS~~~A~~~~~~l 142 (249)
+...+....||+.|+|.||++ +|.-|..-|+ +.+......+
T Consensus 194 l~~~~i~~~n~~~D~e~D~~~G~~Tlpv~lG~---~~a~~~~~~l 235 (306)
T TIGR02056 194 IAGLGIAIVNDFKSVEGDRALGLQSLPVAFGI---ETAAWICVGA 235 (306)
T ss_pred HHHHHHHHHHHccChHHHHHcCCcCcchhcCh---HHHHHHHHHH
Confidence 345555678999999999985 6778876664 4444444433
No 70
>PRK12888 ubiA prenyltransferase; Reviewed
Probab=87.44 E-value=4.4 Score=36.53 Aligned_cols=35 Identities=14% Similarity=0.044 Sum_probs=25.7
Q ss_pred HHHHHHHHHHhhhhccccccCccC-CCCCcccCCCC
Q 025718 96 PAIMMNNYANAINQLADVHIDKVN-KPYLPLACGDF 130 (249)
Q Consensus 96 ~~~l~~~a~~iiND~~D~e~D~in-kp~RPi~sG~I 130 (249)
...+-+.+-..+|++.|+|.||.. .|.-|+--|+=
T Consensus 167 ~~~~w~~~~~~i~a~~D~e~D~~~Gv~sl~v~~G~~ 202 (284)
T PRK12888 167 AVGLWIGGFDLIYACQDAEVDRRIGVRSVPARFGVR 202 (284)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHCCCcCcchhhCch
Confidence 334445566789999999999985 57788766653
No 71
>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase. This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.
Probab=86.66 E-value=3.3 Score=37.01 Aligned_cols=29 Identities=21% Similarity=0.194 Sum_probs=22.8
Q ss_pred HHHHHhhhhccccccCccC-CCCCcccCCC
Q 025718 101 NNYANAINQLADVHIDKVN-KPYLPLACGD 129 (249)
Q Consensus 101 ~~a~~iiND~~D~e~D~in-kp~RPi~sG~ 129 (249)
..+....||+.|+|.||.+ ++.-|+.=|+
T Consensus 174 ~~~i~~~nd~~D~~~D~~~G~~Tl~v~lG~ 203 (283)
T TIGR01476 174 AHGIMTLNDFKSVEGDRQLGLRSLPVMIGV 203 (283)
T ss_pred HHHHHHHHhccchhhHHHcCCcCcceEEcH
Confidence 4445678999999999985 6788876666
No 72
>PRK11383 hypothetical protein; Provisional
Probab=86.63 E-value=9.9 Score=30.90 Aligned_cols=52 Identities=8% Similarity=0.163 Sum_probs=30.0
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhhCCCCc
Q 025718 193 IISMNG-LLLLFPFFIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSE 247 (249)
Q Consensus 193 v~~~~g-~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~i~kdi~Di 247 (249)
.+.++. ++..++.+.. +...++..+++--+...+|..-..-++.+-|++||.
T Consensus 76 ~~~cw~a~l~~i~LL~i---GLwNA~l~lsEKGfY~~af~lsLFgai~vQKn~RD~ 128 (145)
T PRK11383 76 YMTCLTVFIISVALLMV---GLWNATLLLSEKGFYGLAFFLSLFGAVAVQKNIRDA 128 (145)
T ss_pred HHHHHHHHHHHHHHHHH---HHhcCCcchhhhhHHHHHHHHHHHHHHHHHhhhhhh
Confidence 334443 3445555433 355556666665555544443344568999999997
No 73
>PRK12884 ubiA prenyltransferase; Reviewed
Probab=86.32 E-value=3.4 Score=36.71 Aligned_cols=32 Identities=19% Similarity=0.346 Sum_probs=24.0
Q ss_pred HHHHHHHHhhhhccccccCccC-CCCCcccCCC
Q 025718 98 IMMNNYANAINQLADVHIDKVN-KPYLPLACGD 129 (249)
Q Consensus 98 ~l~~~a~~iiND~~D~e~D~in-kp~RPi~sG~ 129 (249)
++.+.+-...||+.|+|.||.+ .|.=|..-|+
T Consensus 165 ~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~ 197 (279)
T PRK12884 165 FLMTLGREIMKDIEDVEGDRLRGARTLAILYGE 197 (279)
T ss_pred HHHHHHHHHHHHhhhhhhHHHcCCeeechHhcH
Confidence 3444455788999999999985 5788876665
No 74
>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=86.28 E-value=11 Score=33.71 Aligned_cols=33 Identities=15% Similarity=-0.007 Sum_probs=24.3
Q ss_pred HHHHHHHHhhhhccccccCccC-CCCCcccCCCC
Q 025718 98 IMMNNYANAINQLADVHIDKVN-KPYLPLACGDF 130 (249)
Q Consensus 98 ~l~~~a~~iiND~~D~e~D~in-kp~RPi~sG~I 130 (249)
++.+.+-...|++.|+|.|+.+ .|.-|+.-|+=
T Consensus 175 ~~w~~~~~~~~a~~D~e~D~~~G~~tl~v~~G~~ 208 (285)
T PRK12847 175 IFWTIGYDTIYAYQDKKDDLKIGVKSTAIYFGNK 208 (285)
T ss_pred HHHHHHHHHHHHhccHhhHHHcCCchhHHHhccc
Confidence 3344444577999999999985 57888877753
No 75
>PRK12871 ubiA prenyltransferase; Reviewed
Probab=86.06 E-value=2.6 Score=38.30 Aligned_cols=34 Identities=12% Similarity=0.067 Sum_probs=26.2
Q ss_pred HHHHHHHHHhhhhccccccCccC-CCCCcccCCCC
Q 025718 97 AIMMNNYANAINQLADVHIDKVN-KPYLPLACGDF 130 (249)
Q Consensus 97 ~~l~~~a~~iiND~~D~e~D~in-kp~RPi~sG~I 130 (249)
.++-+..-...||+.|+|.|+.+ +|.-|+.-|+-
T Consensus 184 ~~~w~~~~~~~~a~~D~e~D~~~G~~Tlpv~~G~~ 218 (297)
T PRK12871 184 FYPWTMAHLGLNDFIDLENDRARGMKSIAVLYGMK 218 (297)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHcCCeeeeeeechH
Confidence 33445555688999999999985 68899988874
No 76
>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase. This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.
Probab=86.00 E-value=3.4 Score=37.28 Aligned_cols=46 Identities=9% Similarity=-0.047 Sum_probs=30.9
Q ss_pred HHHHHHHhhhhccccccCccC-CCCCcccCCCCChHHHHHHHHHHHHHHH
Q 025718 99 MMNNYANAINQLADVHIDKVN-KPYLPLACGDFSMGEGLAITIASPLMAV 147 (249)
Q Consensus 99 l~~~a~~iiND~~D~e~D~in-kp~RPi~sG~IS~~~A~~~~~~l~~~gl 147 (249)
+........||+-|+|.||.+ |++-|.- +.++.+..+...+...+.
T Consensus 172 l~~~~iL~~Nn~rD~e~D~~~Gk~TL~v~---lG~~~a~~l~~~l~~~~y 218 (285)
T TIGR02235 172 LATTLILFCSHFHQVEDDLAHGKRSPVVR---LGTKLAAKIVPWVISLSY 218 (285)
T ss_pred HHHHHHHHhcCCccchhHHHcCCcceehe---ecHHhHHHHHHHHHHHHH
Confidence 445566677999999999996 6677764 445566555555554443
No 77
>PRK12886 ubiA prenyltransferase; Reviewed
Probab=85.46 E-value=1.9 Score=38.98 Aligned_cols=30 Identities=17% Similarity=0.168 Sum_probs=22.6
Q ss_pred HHHHHhhhhccccccCccC-CCCCcccCCCC
Q 025718 101 NNYANAINQLADVHIDKVN-KPYLPLACGDF 130 (249)
Q Consensus 101 ~~a~~iiND~~D~e~D~in-kp~RPi~sG~I 130 (249)
+.+-..+|++.|+|.||.. .|.-|+.-|+=
T Consensus 175 ~~~~~~~~a~~D~e~D~~aGi~slpv~~G~~ 205 (291)
T PRK12886 175 VAGFDILYALQDLEFDRKEGLHSIPAKLGVN 205 (291)
T ss_pred HHHHHHHHHhccHHhHHHcCCcCcchhcCch
Confidence 4343467889999999974 68888887764
No 78
>PRK12887 ubiA tocopherol phytyltransferase; Reviewed
Probab=85.28 E-value=6.5 Score=35.89 Aligned_cols=33 Identities=12% Similarity=0.195 Sum_probs=23.9
Q ss_pred HHHHHHHHHhhhhccccccCccC-CCCCcccCCC
Q 025718 97 AIMMNNYANAINQLADVHIDKVN-KPYLPLACGD 129 (249)
Q Consensus 97 ~~l~~~a~~iiND~~D~e~D~in-kp~RPi~sG~ 129 (249)
.++...+-.++||+.|+|.||.+ +++-|+-=|+
T Consensus 191 ~~~~~~~~~l~~di~D~egD~~~Gi~Tlav~lG~ 224 (308)
T PRK12887 191 VLVFTFAIAIFKDIPDMEGDRQYQITTFTLRLGK 224 (308)
T ss_pred HHHHHHHHHHHHhccchhhHHHcCCcchhHHHhH
Confidence 33455566688999999999985 5677765554
No 79
>PRK05951 ubiA prenyltransferase; Reviewed
Probab=84.98 E-value=18 Score=32.72 Aligned_cols=33 Identities=21% Similarity=0.221 Sum_probs=23.6
Q ss_pred HHHHHHhhhhccccccCccC-CCCCcccCCCCChHHH
Q 025718 100 MNNYANAINQLADVHIDKVN-KPYLPLACGDFSMGEG 135 (249)
Q Consensus 100 ~~~a~~iiND~~D~e~D~in-kp~RPi~sG~IS~~~A 135 (249)
..+.....||+-|+|.||.+ |++-|. ++..+.+
T Consensus 183 ~~~~il~~n~~~D~e~D~~~G~~Tlav---~lG~~~a 216 (296)
T PRK05951 183 LMALVLLSNNLRDIEDDERKGIPTLAV---IFGRRGA 216 (296)
T ss_pred HHHHHHHHCCCccchhHHHCCCeeeee---eEcHhhH
Confidence 34556778999999999986 556665 4555555
No 80
>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed
Probab=84.90 E-value=3.1 Score=37.15 Aligned_cols=32 Identities=16% Similarity=0.199 Sum_probs=23.7
Q ss_pred HHHHHHHHhhhhccccccCccC-CCCCcccCCC
Q 025718 98 IMMNNYANAINQLADVHIDKVN-KPYLPLACGD 129 (249)
Q Consensus 98 ~l~~~a~~iiND~~D~e~D~in-kp~RPi~sG~ 129 (249)
++.+.+-.++||+.|+|.|+.. .|.-|+.-|+
T Consensus 164 f~~~~~~~~~~~~~D~~~D~~~G~~tlpv~~G~ 196 (279)
T PRK09573 164 FFSTWSREIVKDIEDIEGDLKENVITLPIKYGI 196 (279)
T ss_pred HHHHHHHHHHhhhhhhhhHHHCCCccccHHhhH
Confidence 3444455677999999999974 6788886664
No 81
>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed
Probab=83.87 E-value=4.5 Score=36.01 Aligned_cols=29 Identities=24% Similarity=0.405 Sum_probs=22.5
Q ss_pred HHHHHhhhhccccccCccC-CCCCcccCCC
Q 025718 101 NNYANAINQLADVHIDKVN-KPYLPLACGD 129 (249)
Q Consensus 101 ~~a~~iiND~~D~e~D~in-kp~RPi~sG~ 129 (249)
..+-...||+.|+|.||+. .|.-|+.-|+
T Consensus 167 ~~~~~~~~~~~D~e~D~~~G~~Tlpv~~G~ 196 (277)
T PRK12883 167 NVAREIMKDIEDIEGDKAKGAKTLPIIIGK 196 (277)
T ss_pred HHHHHHHhhhhhhccHHHcCCcCcChHhcH
Confidence 3344467999999999985 6888887775
No 82
>PRK12882 ubiA prenyltransferase; Reviewed
Probab=82.64 E-value=13 Score=33.02 Aligned_cols=42 Identities=19% Similarity=0.266 Sum_probs=28.2
Q ss_pred HHHHHHHHhhhhccccccCccC-CCCCcccCCCCChHHHHHHHHHH
Q 025718 98 IMMNNYANAINQLADVHIDKVN-KPYLPLACGDFSMGEGLAITIAS 142 (249)
Q Consensus 98 ~l~~~a~~iiND~~D~e~D~in-kp~RPi~sG~IS~~~A~~~~~~l 142 (249)
++...+-..+||+.|+|.||.+ .|.-|+.-|+ +.+......+
T Consensus 167 fl~~~~~~~~~~~~D~e~D~~~G~~tlpv~~G~---~~t~~~~~~~ 209 (276)
T PRK12882 167 ALATLAREIIKDVEDIEGDRAEGARTLPILIGV---RKALYVAAAF 209 (276)
T ss_pred HHHHHHHHHHhhhhhhhhHHHcCCccccHHhhH---HHHHHHHHHH
Confidence 3344455688999999999985 5788876665 4444444333
No 83
>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed
Probab=82.00 E-value=8.5 Score=34.49 Aligned_cols=36 Identities=11% Similarity=0.062 Sum_probs=25.5
Q ss_pred HHHHHHHHHHhhhhccccccCccC-CCCCcccCCCCC
Q 025718 96 PAIMMNNYANAINQLADVHIDKVN-KPYLPLACGDFS 131 (249)
Q Consensus 96 ~~~l~~~a~~iiND~~D~e~D~in-kp~RPi~sG~IS 131 (249)
..++-+..-...|.+.|+|.||.. .|.-|+.-|+=+
T Consensus 170 ~~~~w~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~~ 206 (282)
T PRK12848 170 ANILWTVAYDTQYAMVDRDDDLKIGIKSTAILFGRYD 206 (282)
T ss_pred HHHHHHHHHHHHHHhccHhhHHHcCCccccHHhcccc
Confidence 333444444567899999999985 588888777643
No 84
>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=77.89 E-value=11 Score=34.00 Aligned_cols=38 Identities=8% Similarity=0.036 Sum_probs=26.9
Q ss_pred HHHHHHHHHHhhhhccccccCccC-CCCCcccCCCCChH
Q 025718 96 PAIMMNNYANAINQLADVHIDKVN-KPYLPLACGDFSMG 133 (249)
Q Consensus 96 ~~~l~~~a~~iiND~~D~e~D~in-kp~RPi~sG~IS~~ 133 (249)
..++-+.+-..+|++.|+|.|+.. .|.-|+.=|+=+..
T Consensus 174 ~~~lw~~~~d~~~a~~D~e~D~~~G~~slav~~G~~~~~ 212 (290)
T PRK12870 174 ATVFWTLGFDTVYAMSDREDDLRIGVNSSAIFFGRYAPE 212 (290)
T ss_pred HHHHHHHHHHHHHHhhhHhhHHHCCCcchhHHhccccHH
Confidence 344456666678999999999985 47777766655443
No 85
>PRK12895 ubiA prenyltransferase; Reviewed
Probab=77.19 E-value=41 Score=30.44 Aligned_cols=35 Identities=17% Similarity=0.190 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHhhhhccccccCccCC-CCCcccCCC
Q 025718 95 VPAIMMNNYANAINQLADVHIDKVNK-PYLPLACGD 129 (249)
Q Consensus 95 l~~~l~~~a~~iiND~~D~e~D~ink-p~RPi~sG~ 129 (249)
++.++-..+=.++.++.|+|.|+... ++-|+-=|+
T Consensus 166 ~~~~~W~~g~D~iYa~qD~e~D~~~Gv~S~a~~fG~ 201 (286)
T PRK12895 166 ISSSLWIAGFDIIYVIPDIEYDKINGLKTIMNTYGI 201 (286)
T ss_pred HHHHHHHHHHHHHHHhcchhhHHHcCCCchHHHHCC
Confidence 34444455556889999999999864 666665443
No 86
>PRK12874 ubiA prenyltransferase; Reviewed
Probab=77.07 E-value=5.4 Score=36.08 Aligned_cols=33 Identities=18% Similarity=0.233 Sum_probs=24.7
Q ss_pred HHHHHHHHhhhhccccccCccC-CCCCcccCCCC
Q 025718 98 IMMNNYANAINQLADVHIDKVN-KPYLPLACGDF 130 (249)
Q Consensus 98 ~l~~~a~~iiND~~D~e~D~in-kp~RPi~sG~I 130 (249)
++-+.+-..+|++.|+|.||+. .|.-|+.-|+=
T Consensus 177 ~~w~~~~~~~~a~~D~~~D~~~Gi~slpv~~G~~ 210 (291)
T PRK12874 177 MFWVAGFDLLYSLQDMEFDKKRGLHSIPSKFGEK 210 (291)
T ss_pred HHHHHHHHHHHHhccHHHHHHcCCCcccHHhhhH
Confidence 3445555678999999999874 68888877763
No 87
>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase. This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.
Probab=75.03 E-value=14 Score=33.41 Aligned_cols=44 Identities=18% Similarity=0.107 Sum_probs=29.0
Q ss_pred HHHHHHhhhhccccccCccC-CCCCcccCCCCChHHHHHHHHHHHHHH
Q 025718 100 MNNYANAINQLADVHIDKVN-KPYLPLACGDFSMGEGLAITIASPLMA 146 (249)
Q Consensus 100 ~~~a~~iiND~~D~e~D~in-kp~RPi~sG~IS~~~A~~~~~~l~~~g 146 (249)
........||+-|+|.|+.+ |++-|. ++..+.+..+...+...+
T Consensus 176 l~~~il~~Nn~~D~~~D~~~Gk~Tl~v---~lG~~~a~~l~~~l~~~a 220 (284)
T TIGR00751 176 LACAVLNINNLRDIPTDARAGKNTLAV---RLGDARTRMYHQGLLAVA 220 (284)
T ss_pred HHHHHHHHcCcccchhHHHcCCEeehh---hcchHhHHHHHHHHHHHH
Confidence 34555668999999999986 566665 444556655555554443
No 88
>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]. These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane
Probab=72.89 E-value=8.9 Score=32.92 Aligned_cols=27 Identities=19% Similarity=0.279 Sum_probs=18.5
Q ss_pred HHHHHHHhhhhccccccCccC-CCCCcc
Q 025718 99 MMNNYANAINQLADVHIDKVN-KPYLPL 125 (249)
Q Consensus 99 l~~~a~~iiND~~D~e~D~in-kp~RPi 125 (249)
+........||+-|+|.|+.. +++-|.
T Consensus 157 ~~~~~~~~~~~~~D~~~D~~~g~~Tl~v 184 (257)
T PF01040_consen 157 LLIFAIMFFNDIRDIEGDRKAGRRTLPV 184 (257)
T ss_pred HHHHHHHHHHHhhhHHHHHHcCCcchHH
Confidence 344455577899999999874 455443
No 89
>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=71.63 E-value=22 Score=32.55 Aligned_cols=34 Identities=18% Similarity=0.029 Sum_probs=24.6
Q ss_pred HHHHHHHHHhhhhccccccCccC-CCCCcccCCCC
Q 025718 97 AIMMNNYANAINQLADVHIDKVN-KPYLPLACGDF 130 (249)
Q Consensus 97 ~~l~~~a~~iiND~~D~e~D~in-kp~RPi~sG~I 130 (249)
.++-+..-..++++.|+|.||.. +|.-|..-|+=
T Consensus 201 ~~~w~~~~~~~~a~~D~e~D~~aGi~slpv~~G~~ 235 (314)
T PRK12878 201 SIAWTIGYDTIYAHQDKEDDALIGVKSTARLFGDH 235 (314)
T ss_pred HHHHHHHHHHHHHhhhHhhHHHcCCcccchHhchh
Confidence 33444455566899999999984 68888877763
No 90
>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]
Probab=69.82 E-value=82 Score=28.11 Aligned_cols=23 Identities=13% Similarity=0.055 Sum_probs=13.4
Q ss_pred HHHHHHHhhhhccccccCc-cCCC
Q 025718 99 MMNNYANAINQLADVHIDK-VNKP 121 (249)
Q Consensus 99 l~~~a~~iiND~~D~e~D~-inkp 121 (249)
.....-.....=.|++.+| .++|
T Consensus 62 ag~~iND~~D~eiD~~n~rt~~RP 85 (289)
T COG0382 62 AGYVINDLADREIDRINPRTKNRP 85 (289)
T ss_pred HhHHHHHHhhhhccCCCCCccCCC
Confidence 3343334555558998877 4654
No 91
>PRK12876 ubiA prenyltransferase; Reviewed
Probab=66.47 E-value=1e+02 Score=28.20 Aligned_cols=27 Identities=19% Similarity=0.347 Sum_probs=19.8
Q ss_pred HhhhhccccccCccCC-CCCcccCCCCC
Q 025718 105 NAINQLADVHIDKVNK-PYLPLACGDFS 131 (249)
Q Consensus 105 ~iiND~~D~e~D~ink-p~RPi~sG~IS 131 (249)
.++.+..|+|.||... +.-|..-|+=+
T Consensus 189 DiiYa~qD~e~D~~~Gl~Slpv~fG~~~ 216 (300)
T PRK12876 189 DIIYAIQDLEFDRKEGLFSIPARFGEKK 216 (300)
T ss_pred HHHHHHcCHhhHHHcCCccchHHHCchh
Confidence 4566689999999864 77777666554
No 92
>PLN02878 homogentisate phytyltransferase
Probab=63.49 E-value=40 Score=30.54 Aligned_cols=42 Identities=10% Similarity=0.110 Sum_probs=27.3
Q ss_pred HHHHHHHhhhhccccccCccC-CCCCcccCCCCChHHHHHHHHHHH
Q 025718 99 MMNNYANAINQLADVHIDKVN-KPYLPLACGDFSMGEGLAITIASP 143 (249)
Q Consensus 99 l~~~a~~iiND~~D~e~D~in-kp~RPi~sG~IS~~~A~~~~~~l~ 143 (249)
+...+..++||+-|.|-||.. .++-|+-=| ++.+..+...+.
T Consensus 167 ~f~~~i~i~KDi~DieGD~~~Gi~Tlpv~lG---~~~~~~i~~~ll 209 (280)
T PLN02878 167 FFSVVIALFKDIPDVEGDRIFGIRSFSVRLG---QKRVFWLCVNLL 209 (280)
T ss_pred HHHHHHHHHhhCcCchhHHHCCCceechhhC---hHHHHHHHHHHH
Confidence 334455589999999999985 577777544 344444444443
No 93
>PRK12873 ubiA prenyltransferase; Reviewed
Probab=58.10 E-value=1.5e+02 Score=27.03 Aligned_cols=24 Identities=21% Similarity=0.163 Sum_probs=18.3
Q ss_pred hhhhccccccCccCC-CCCcccCCC
Q 025718 106 AINQLADVHIDKVNK-PYLPLACGD 129 (249)
Q Consensus 106 iiND~~D~e~D~ink-p~RPi~sG~ 129 (249)
.+-.+.|+|.|+..+ |.-|..-|+
T Consensus 188 ~iyA~qD~edD~~~Gv~slpv~~G~ 212 (294)
T PRK12873 188 TVYAMADRRDDAKIGLNSSALSLGS 212 (294)
T ss_pred HHHHHHhHhhHHHcCCcccchhcCh
Confidence 445567999999864 788887786
No 94
>COG4147 DhlC Predicted symporter [General function prediction only]
Probab=54.65 E-value=24 Score=34.40 Aligned_cols=93 Identities=12% Similarity=0.108 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHhhhhccccccCcc-CCCCCcccCCCCChHHHHHHHHHHHHHHHHHHHHh-c------hHHHHHHHHHHH
Q 025718 95 VPAIMMNNYANAINQLADVHIDKV-NKPYLPLACGDFSMGEGLAITIASPLMAVAMGIML-R------SPPLVIGFIIWC 166 (249)
Q Consensus 95 l~~~l~~~a~~iiND~~D~e~D~i-nkp~RPi~sG~IS~~~A~~~~~~l~~~gl~l~~~l-~------~~~l~l~~l~~~ 166 (249)
.+..++..+.-+-+|++++-+|+- ++++|- +.+++...++.+++..++..- + .+++.++. .+.
T Consensus 360 aaGL~l~iasavsHDiY~~vik~~ase~~~v--------~vaRi~~v~~~vva~~lgi~~~gnVaflVa~AF~lAa-Sa~ 430 (529)
T COG4147 360 AAGLLLVIASAVSHDLYAMVIKKGATEKKEV--------RVARIAVVILGVVAILLGILPPGNVAFLVALAFALAA-SAN 430 (529)
T ss_pred HhhHHHHHHHHHHhHHHHHHhCCCCCcccee--------hhHHHHHHHHHHHHHHheecCCccHHHHHHHHHHHHH-Hcc
Confidence 344555666667799998877776 333332 445566666666666655321 1 12222211 122
Q ss_pred HHhhHhcCcCCcccccccCchhHHHHHHHHHHHHHHH
Q 025718 167 IVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLF 203 (249)
Q Consensus 167 ~l~~~YS~~~P~p~~lKr~~~~~~l~v~~~~g~~~~~ 203 (249)
+=.++|+. ++||..--|.+. ....|+++.+
T Consensus 431 fPvivlgl------fWKr~n~~GAi~-G~~~GL~~tl 460 (529)
T COG4147 431 FPVIVLGL------FWKRLNTAGAIA-GMLLGLIVTL 460 (529)
T ss_pred cchhhHHH------HHhhccHHhHHH-HHHHHHHHHH
Confidence 33466766 899988777643 3445544443
No 95
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=52.96 E-value=2.9e+02 Score=28.88 Aligned_cols=30 Identities=23% Similarity=0.191 Sum_probs=17.0
Q ss_pred CccCCCCCcccCCCCChHHHHHHHHHHHHH
Q 025718 116 DKVNKPYLPLACGDFSMGEGLAITIASPLM 145 (249)
Q Consensus 116 D~inkp~RPi~sG~IS~~~A~~~~~~l~~~ 145 (249)
|++.++-|.+-+++=-.+.++.+-++.+.+
T Consensus 158 ~rvP~rLR~lL~~ESGlNDGlAfpfv~LaL 187 (810)
T TIGR00844 158 QKVPGHLRNLLSCESGCNDGLAFPFVFLSM 187 (810)
T ss_pred ccCChHHHhHHhhhhhcccHHHHHHHHHHH
Confidence 344455667777776666665554444433
No 96
>COG1295 Rbn Ribonuclease BN family enzyme [Replication, recombination, and repair]
Probab=49.99 E-value=2e+02 Score=26.04 Aligned_cols=40 Identities=23% Similarity=0.167 Sum_probs=19.0
Q ss_pred HHHhhHhcCcCCccc-ccccC-chhHHHHHHHHHHHH-HHHHHHH
Q 025718 166 CIVGGAYSIDLPPLL-RWKGN-PLMAAVTIISMNGLL-LLFPFFI 207 (249)
Q Consensus 166 ~~l~~~YS~~~P~p~-~lKr~-~~~~~l~v~~~~g~~-~~~g~~~ 207 (249)
+++.++|.. +| .. ..|++ ...|.+..++.+-+. ..++.|.
T Consensus 202 ~~f~~ly~~-lP-~~~~~~~~~~~~Ga~~aai~~~i~~~~f~~Yv 244 (303)
T COG1295 202 LGFFLLYRF-LP-NVRVLKWRDVLPGALLAAILFELGKYLFGYYL 244 (303)
T ss_pred HHHHHHHHH-cC-CccccchHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 456667765 46 44 34444 455555444333322 3344443
No 97
>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed
Probab=49.44 E-value=40 Score=30.07 Aligned_cols=22 Identities=23% Similarity=0.234 Sum_probs=16.5
Q ss_pred hhccccccCccC-CCCCcccCCC
Q 025718 108 NQLADVHIDKVN-KPYLPLACGD 129 (249)
Q Consensus 108 ND~~D~e~D~in-kp~RPi~sG~ 129 (249)
|++.|+|-|++. .|.-|..-|+
T Consensus 179 l~~~d~edd~~~G~~tlpv~~G~ 201 (279)
T PRK12869 179 LALKYREDYRRAGVPMLPAVVGE 201 (279)
T ss_pred HHHHhHHhHHHcCCeecceeecH
Confidence 678899999764 5777876664
No 98
>PLN02776 prenyltransferase
Probab=48.46 E-value=2.2e+02 Score=26.53 Aligned_cols=39 Identities=13% Similarity=-0.095 Sum_probs=23.8
Q ss_pred cccccCcc-CCCCCcccC--CCCChHHHHHHHHHHHHHHHHH
Q 025718 111 ADVHIDKV-NKPYLPLAC--GDFSMGEGLAITIASPLMAVAM 149 (249)
Q Consensus 111 ~D~e~D~i-nkp~RPi~s--G~IS~~~A~~~~~~l~~~gl~l 149 (249)
.|+|.|+. .-|.-|++. |+-+.++.......+..++++.
T Consensus 174 ~~~dDy~~ag~pmlpv~~~~g~~ta~~i~~~~~~l~~~~ll~ 215 (341)
T PLN02776 174 MCRDDYAAGGYRMLSLADATGRRTALVALRNCLYLAPLGFLA 215 (341)
T ss_pred HhHHHHHhCCCcccCccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 45554443 346777776 4556667776777776666654
No 99
>PRK13595 ubiA prenyltransferase; Provisional
Probab=46.85 E-value=80 Score=28.76 Aligned_cols=51 Identities=14% Similarity=0.077 Sum_probs=35.9
Q ss_pred HHHHHhhhhccccccCccC-CCCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhc
Q 025718 101 NNYANAINQLADVHIDKVN-KPYLPLACGDFSMGEGLAITIASPLMAVAMGIMLR 154 (249)
Q Consensus 101 ~~a~~iiND~~D~e~D~in-kp~RPi~sG~IS~~~A~~~~~~l~~~gl~l~~~l~ 154 (249)
..+..++-|+.|+|-||.. .++=|. +..++.+..++..+.+++.++...++
T Consensus 182 ~~g~dii~ai~DiegDr~~Gi~Slpv---~lG~r~a~~~a~~~~~~a~~~~~~~~ 233 (292)
T PRK13595 182 SVGKHAFDAAQDIPADRAAGTRTVAT---TLGVRGTALYALAWFLLAGALLWPVS 233 (292)
T ss_pred HHHHHHHHhccChHhHHHcCCeechH---HhCcHhHHHHHHHHHHHHHHHHHHhc
Confidence 3555678888899999986 356665 44557777788887777766655544
No 100
>PRK04214 rbn ribonuclease BN/unknown domain fusion protein; Reviewed
Probab=45.80 E-value=2.5e+02 Score=26.53 Aligned_cols=17 Identities=12% Similarity=0.313 Sum_probs=11.2
Q ss_pred HHHHHHHhhhhcccccc
Q 025718 99 MMNNYANAINQLADVHI 115 (249)
Q Consensus 99 l~~~a~~iiND~~D~e~ 115 (249)
+++.--..+|++++.+.
T Consensus 116 ~~~~ie~a~N~Iw~v~~ 132 (412)
T PRK04214 116 LLHTIEQTFNRIWRVNS 132 (412)
T ss_pred HHHHHHHHHHHHhCCCC
Confidence 34555568899887653
No 101
>PRK13592 ubiA prenyltransferase; Provisional
Probab=45.51 E-value=45 Score=30.50 Aligned_cols=28 Identities=0% Similarity=-0.200 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCccC
Q 025718 222 KPVLFTAAYMVIWNAAIAFVKVTNSEIE 249 (249)
Q Consensus 222 ~~~~~~~~~~~l~~~~~~i~kdi~Di~~ 249 (249)
...++.....++++.+..++||+.|+|.
T Consensus 46 ~~~~l~~~~vf~~~~~gniiNDy~D~EI 73 (299)
T PRK13592 46 IQEFVGVFTVFGFWMILRIADDFKDYET 73 (299)
T ss_pred hHHHHHHHHHHHHHHHhHHHHHHhhHHH
Confidence 3444444445566777899999999983
No 102
>TIGR02711 symport_actP cation/acetate symporter ActP. Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.
Probab=42.36 E-value=3.3e+02 Score=26.73 Aligned_cols=47 Identities=13% Similarity=0.146 Sum_probs=23.8
Q ss_pred HHHHHHhhhhccccccCccCCCCCcccCCCCChHHHHHHHHHHHHHHHHHHHH
Q 025718 100 MNNYANAINQLADVHIDKVNKPYLPLACGDFSMGEGLAITIASPLMAVAMGIM 152 (249)
Q Consensus 100 ~~~a~~iiND~~D~e~D~inkp~RPi~sG~IS~~~A~~~~~~l~~~gl~l~~~ 152 (249)
...++.+-||++.+-..+.+.+ .+=..+.+++..++..++++.++..
T Consensus 376 ~a~st~i~~Diy~~~~~~~~~s------~~~~~~v~Ri~~vv~g~ia~~~a~~ 422 (549)
T TIGR02711 376 LAGASAVSHDLYANVIKKGKAT------ERDELRVSKITVLILGVIAIGLGIL 422 (549)
T ss_pred HHHHHHHHHHHHHHhcCCCCCC------hhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3445567799987533211101 1112345556666666666666643
No 103
>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase. This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.
Probab=42.16 E-value=91 Score=27.68 Aligned_cols=20 Identities=25% Similarity=0.346 Sum_probs=14.9
Q ss_pred ccccccCccC-CCCCcccCCC
Q 025718 110 LADVHIDKVN-KPYLPLACGD 129 (249)
Q Consensus 110 ~~D~e~D~in-kp~RPi~sG~ 129 (249)
+.|+|.||.. .|.-|..-|+
T Consensus 180 ~~~~~dd~~~G~~tl~v~~G~ 200 (280)
T TIGR01473 180 LKYKDDYRAAGIPMLPVVKGE 200 (280)
T ss_pred HHhhhhHHHCCCccCCcccCH
Confidence 5789999874 5777877665
No 104
>PLN02809 4-hydroxybenzoate nonaprenyltransferase
Probab=40.10 E-value=1.6e+02 Score=26.53 Aligned_cols=25 Identities=24% Similarity=0.048 Sum_probs=18.0
Q ss_pred hhhhccccccCccC-CCCCcccCCCC
Q 025718 106 AINQLADVHIDKVN-KPYLPLACGDF 130 (249)
Q Consensus 106 iiND~~D~e~D~in-kp~RPi~sG~I 130 (249)
.+....|+|-||+. -|.-|..-|+=
T Consensus 184 ~~ya~~D~e~D~~~Gi~sl~v~~G~~ 209 (289)
T PLN02809 184 TIYAHQDKEDDLKVGVKSTALRFGDD 209 (289)
T ss_pred HHHHHhchhhHHhCCCcccchhhcHH
Confidence 44455799999985 47788776764
No 105
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=39.92 E-value=3.4e+02 Score=25.93 Aligned_cols=46 Identities=17% Similarity=0.067 Sum_probs=22.0
Q ss_pred HHHHHHhhhhccccccCccCCCCCcccCCCCChHHHHHHHHHHHHHHHHHHH
Q 025718 100 MNNYANAINQLADVHIDKVNKPYLPLACGDFSMGEGLAITIASPLMAVAMGI 151 (249)
Q Consensus 100 ~~~a~~iiND~~D~e~D~inkp~RPi~sG~IS~~~A~~~~~~l~~~gl~l~~ 151 (249)
...++..-||++++ ..+. |+ .+.+-..+-.+....+..++++.+++
T Consensus 341 ~~~ss~~~~Di~~~-~~~~----~~-~s~~~~~~v~r~~~~~~~~~~~~~a~ 386 (483)
T PRK09442 341 LQSSSTIIKDLYLN-IRPD----QI-ANEKKLKRISLIITLILGLLVLLAAL 386 (483)
T ss_pred HHHHHHHHHHHHHH-hccC----CC-CChHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445566999876 3221 11 11121233445555555555655554
No 106
>PRK04375 protoheme IX farnesyltransferase; Provisional
Probab=39.83 E-value=2.8e+02 Score=24.87 Aligned_cols=24 Identities=17% Similarity=0.043 Sum_probs=16.8
Q ss_pred hhhhccccccCccC-CCCCcccCCC
Q 025718 106 AINQLADVHIDKVN-KPYLPLACGD 129 (249)
Q Consensus 106 iiND~~D~e~D~in-kp~RPi~sG~ 129 (249)
..|.+.|+|-||.. -|.-|+.-|+
T Consensus 185 ~~~~~~d~~D~~~~G~~tlpv~~G~ 209 (296)
T PRK04375 185 WALAIFRKDDYAAAGIPMLPVVKGI 209 (296)
T ss_pred HHHHHHHHhhHHHcCCCccceeeCH
Confidence 34568899999764 4777876664
No 107
>TIGR03750 conj_TIGR03750 conjugative transfer region protein, TIGR03750 family. Members of this protein family are found occasionally on plasmids. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=36.44 E-value=1.4e+02 Score=23.31 Aligned_cols=34 Identities=15% Similarity=0.191 Sum_probs=23.2
Q ss_pred cCccCCCCCcccCCCCChHHHHHHHHHHHHHHHHHH
Q 025718 115 IDKVNKPYLPLACGDFSMGEGLAITIASPLMAVAMG 150 (249)
Q Consensus 115 ~D~inkp~RPi~sG~IS~~~A~~~~~~l~~~gl~l~ 150 (249)
-||.|+ -|.+=+-+|..|..+.+.+...+++.++
T Consensus 5 p~RLN~--ePvV~rGlT~~El~~~~~~~~~~gl~~g 38 (111)
T TIGR03750 5 PDRLNR--EPVVFRGLTADELGVAAGVGLAAGLVLG 38 (111)
T ss_pred chhhcC--CCceecccCHHHHHHHHHHHHHHHHHHH
Confidence 367764 3555667888888887777776665544
No 108
>PF05360 YiaAB: yiaA/B two helix domain; InterPro: IPR008024 This domain consists of two transmembrane helices and a conserved linking section.
Probab=33.65 E-value=1.5e+02 Score=19.77 Aligned_cols=34 Identities=9% Similarity=0.277 Sum_probs=22.7
Q ss_pred HhcCCccccHHHHHHHHHHHHHHHHHHHhhCCCC
Q 025718 213 VLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNS 246 (249)
Q Consensus 213 ~~g~~~~~~~~~~~~~~~~~l~~~~~~i~kdi~D 246 (249)
..-.+...+.--++..+++....-+..+.|.+||
T Consensus 20 l~~~~~~l~~KGy~~~~~l~~l~s~~tl~K~vRD 53 (53)
T PF05360_consen 20 LWNAPLDLSEKGYYAMGLLFLLFSAFTLQKTVRD 53 (53)
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHHHHhhhhhcCC
Confidence 3344555555555566666666777899999998
No 109
>PF06738 DUF1212: Protein of unknown function (DUF1212); InterPro: IPR010619 This entry represents a predicted domain found within a number of hypothetical proteins of unknown function found in eukaryotes, bacteria and archaea. Some of these sequences are predicted to be membrane proteins.
Probab=33.59 E-value=97 Score=25.64 Aligned_cols=29 Identities=14% Similarity=0.078 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHhchHHHHHHHHHH
Q 025718 137 AITIASPLMAVAMGIMLRSPPLVIGFIIW 165 (249)
Q Consensus 137 ~~~~~l~~~gl~l~~~l~~~~l~l~~l~~ 165 (249)
.++..+...++...+--+++..+.+.+.+
T Consensus 107 ~l~~~l~~~~fa~lfgg~~~~~~~a~i~g 135 (193)
T PF06738_consen 107 ILAAGLASAAFALLFGGSWIDMIVAFILG 135 (193)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 44444444444433222344444444444
No 110
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=33.12 E-value=35 Score=24.21 Aligned_cols=28 Identities=11% Similarity=0.131 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHhhhhccccccCccCC
Q 025718 93 CMVPAIMMNNYANAINQLADVHIDKVNK 120 (249)
Q Consensus 93 ~~l~~~l~~~a~~iiND~~D~e~D~ink 120 (249)
.+++.+++....+..|=||-++.||++.
T Consensus 37 Gvi~gi~~~~lt~ltN~YFK~k~drr~~ 64 (68)
T PF04971_consen 37 GVIGGIFFGLLTYLTNLYFKIKEDRRKA 64 (68)
T ss_pred HHHHHHHHHHHHHHhHhhhhhhHhhhHh
Confidence 4567777788888999999999999864
No 111
>TIGR00267 conserved hypothetical protein TIGR00267. This family is represented in three of the first four completed archaeal genomes, with two members in A. fulgidus.
Probab=31.04 E-value=3e+02 Score=22.66 Aligned_cols=17 Identities=18% Similarity=0.241 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHhhhhcc
Q 025718 95 VPAIMMNNYANAINQLA 111 (249)
Q Consensus 95 l~~~l~~~a~~iiND~~ 111 (249)
++...+.+-++.+++|.
T Consensus 35 la~~vA~a~Sma~GeYv 51 (169)
T TIGR00267 35 LGGGVANGMSNAFGAFT 51 (169)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444445566777776
No 112
>PF04547 Anoctamin: Calcium-activated chloride channel; InterPro: IPR007632 This family contains the anoctamin/TMEM16 proteins which are thought to be calcium-dependent chloride channel [].
Probab=30.24 E-value=1e+02 Score=29.35 Aligned_cols=38 Identities=13% Similarity=0.191 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHhhhhccccccCccC---CCCCcccCCCCCh
Q 025718 95 VPAIMMNNYANAINQLADVHIDKVN---KPYLPLACGDFSM 132 (249)
Q Consensus 95 l~~~l~~~a~~iiND~~D~e~D~in---kp~RPi~sG~IS~ 132 (249)
.+++-.......+|++.+...|+.. .-+||.|.+.=+.
T Consensus 332 ~~afPlapl~allnN~~eir~D~~Kl~~~~rRP~p~~~~~I 372 (452)
T PF04547_consen 332 SAAFPLAPLFALLNNIVEIRLDAFKLLYLYRRPVPRRASSI 372 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhCCCCcccccch
Confidence 3444455555688999999999963 4689999866554
No 113
>COG2832 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.29 E-value=2e+02 Score=22.72 Aligned_cols=48 Identities=13% Similarity=0.188 Sum_probs=28.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHh-chHHHHHHHHHHHHHhhHhcCcCCcccccccCc
Q 025718 131 SMGEGLAITIASPLMAVAMGIML-RSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNP 186 (249)
Q Consensus 131 S~~~A~~~~~~l~~~gl~l~~~l-~~~~l~l~~l~~~~l~~~YS~~~P~p~~lKr~~ 186 (249)
=+++++..+.+++.+++.++++. +....-.+++..+.....| ..||.|
T Consensus 69 i~~~aK~~ai~~i~~~~~~s~~~v~~~~~r~~l~~v~l~~~~~--------~~~~~P 117 (119)
T COG2832 69 IPRKAKIKAILLITLSIGISFYFVPVLWVRVALVAVILFGTAY--------IFKRRP 117 (119)
T ss_pred CChhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHhh--------eeEecC
Confidence 34567788888888888887654 3333333333333444445 567654
No 114
>TIGR02762 TraL_TIGR type IV conjugative transfer system protein TraL. This protein is part of the type IV secretion system for conjugative plasmid transfer. The function of the TraL protein is unknown.
Probab=22.11 E-value=1.7e+02 Score=21.77 Aligned_cols=32 Identities=9% Similarity=-0.040 Sum_probs=20.6
Q ss_pred CccCCCCCcccCCCCChHHHHHHHHHHHHHHHHHHH
Q 025718 116 DKVNKPYLPLACGDFSMGEGLAITIASPLMAVAMGI 151 (249)
Q Consensus 116 D~inkp~RPi~sG~IS~~~A~~~~~~l~~~gl~l~~ 151 (249)
|++|+|.|-+ -.+..|+ ..+.+.+.+|+..+.
T Consensus 7 ~~Ld~~~~i~---g~t~DE~-i~~~~~~~~Gi~~~~ 38 (95)
T TIGR02762 7 KYLDEQPRIL---GLPLDEF-LPGATLFGIGILSGK 38 (95)
T ss_pred CccCCCCeEE---EeeHHHH-HHHHHHHHHHHHHhh
Confidence 5567776665 6788888 555555556665543
No 115
>PRK10484 putative transporter; Provisional
Probab=21.86 E-value=7.4e+02 Score=24.02 Aligned_cols=14 Identities=0% Similarity=-0.301 Sum_probs=8.8
Q ss_pred HHHHHhhhhccccc
Q 025718 101 NNYANAINQLADVH 114 (249)
Q Consensus 101 ~~a~~iiND~~D~e 114 (249)
..++...||++.+-
T Consensus 350 s~st~~t~Diy~~~ 363 (523)
T PRK10484 350 SASTLFSLDIYKPI 363 (523)
T ss_pred HHHHHHHHHhhhhh
Confidence 34455668888654
No 116
>COG1033 Predicted exporters of the RND superfamily [General function prediction only]
Probab=21.67 E-value=2.7e+02 Score=28.79 Aligned_cols=18 Identities=11% Similarity=0.014 Sum_probs=11.7
Q ss_pred HHHHHHHHHHhhhhcccc
Q 025718 96 PAIMMNNYANAINQLADV 113 (249)
Q Consensus 96 ~~~l~~~a~~iiND~~D~ 113 (249)
-++...-+....|.|++.
T Consensus 260 IgiGidy~vh~~nr~~ee 277 (727)
T COG1033 260 IGIGIDYGVHFHNRYEEE 277 (727)
T ss_pred hhhhhhHHHHHHHHHHHH
Confidence 334455566788999864
No 117
>smart00816 Amb_V_allergen Amb V Allergen. Amb V is an Ambrosia sp (ragweed) pollen allergen. Amb t V has been shown to contain a C-terminal helix as the major T cell epitope. Free sulphhydryl groups also play a major role in the T cell recognition of cross-reactivity T cell epitopes within these related allergens.
Probab=21.37 E-value=49 Score=21.11 Aligned_cols=13 Identities=46% Similarity=0.723 Sum_probs=10.4
Q ss_pred CCCCCCCCCCCch
Q 025718 7 PCSSFPLKYHPLQ 19 (249)
Q Consensus 7 ~~~~~~~~~~~~~ 19 (249)
-|.+-|+.|||-|
T Consensus 18 YCcSdpGrYCpwq 30 (45)
T smart00816 18 YCCSDPGRYCPWQ 30 (45)
T ss_pred cccCCCcccCCce
Confidence 3778899999865
Done!