Query 025718
Match_columns 249
No_of_seqs 192 out of 1655
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 16:05:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025718.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025718hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dh4_A Sodium/glucose cotransp 38.5 2.4E+02 0.0082 26.0 14.1 45 100-151 342-386 (530)
2 2kdc_A Diacylglycerol kinase; 15.7 3.6E+02 0.012 20.1 7.6 30 98-127 62-91 (121)
3 1wj2_A Probable WRKY transcrip 14.1 23 0.0008 24.8 -1.1 13 9-21 34-46 (78)
4 2ayd_A WRKY transcription fact 13.7 25 0.00086 24.5 -1.0 13 9-21 31-43 (76)
5 1w8x_P Protein P16, protein S, 9.9 1.4E+02 0.0046 21.3 1.8 40 15-54 71-112 (117)
6 3qkc_B Geranyl diphosphate syn 9.6 5.1E+02 0.017 21.7 5.8 51 95-149 72-122 (273)
7 1co4_A AMT1, protein (activato 7.1 1.4E+02 0.0047 18.3 0.7 15 112-126 27-41 (42)
8 2xq2_A Sodium/glucose cotransp 6.9 1.3E+03 0.046 21.1 13.0 11 181-191 447-457 (593)
9 3kra_B Geranyl diphosphate syn 6.6 9.6E+02 0.033 19.9 6.2 54 95-150 67-120 (274)
10 2lx0_A Membrane fusion protein 6.3 4.2E+02 0.014 14.6 3.5 8 183-190 1-8 (32)
No 1
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=38.46 E-value=2.4e+02 Score=26.02 Aligned_cols=45 Identities=9% Similarity=0.011 Sum_probs=22.0
Q ss_pred HHHHHHhhhhccccccCccCCCCCcccCCCCChHHHHHHHHHHHHHHHHHHH
Q 025718 100 MNNYANAINQLADVHIDKVNKPYLPLACGDFSMGEGLAITIASPLMAVAMGI 151 (249)
Q Consensus 100 ~~~a~~iiND~~D~e~D~inkp~RPi~sG~IS~~~A~~~~~~l~~~gl~l~~ 151 (249)
...++..-||++.+-+ ||=++.+=..+-++...++..++++.++.
T Consensus 342 ~s~st~~~~Diy~~~~-------~~~~s~~~~~~v~R~~~v~~~i~a~~~a~ 386 (530)
T 3dh4_A 342 NSTATIFTMDIYKEYI-------SPDSGDHKLVNVGRTAAVVALIIACLIAP 386 (530)
T ss_dssp HHHHHHHHHHTCCCCC-------CSCSCSSHHHHHHHHHHHHHHHHHHHHGG
T ss_pred HHhHHHHHhHHHHHhc-------CCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556688874322 11122222234455566666666666553
No 2
>2kdc_A Diacylglycerol kinase; membrane protein, solution kinase, DAGK, cell inner membrane, cell membrane, membrane, phospholipid biosynthesis; NMR {Escherichia coli}
Probab=15.69 E-value=3.6e+02 Score=20.05 Aligned_cols=30 Identities=17% Similarity=0.368 Sum_probs=22.1
Q ss_pred HHHHHHHHhhhhccccccCccCCCCCcccC
Q 025718 98 IMMNNYANAINQLADVHIDKVNKPYLPLAC 127 (249)
Q Consensus 98 ~l~~~a~~iiND~~D~e~D~inkp~RPi~s 127 (249)
+.+-...-.+|--.+.-.|++.+.+.|+.+
T Consensus 62 i~lVl~~EllNTAIE~vvD~v~~e~h~lak 91 (121)
T 2kdc_A 62 VMLVMIVEILNSAIEAVVDRIGSEYHELSG 91 (121)
T ss_dssp HHHHHHHHTHHHHHHHHHTTCCCCSCTTSH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCccCHHHH
Confidence 344445568899999999998777777753
No 3
>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*
Probab=14.09 E-value=23 Score=24.78 Aligned_cols=13 Identities=15% Similarity=0.396 Sum_probs=10.7
Q ss_pred CCCCCCCCCchhh
Q 025718 9 SSFPLKYHPLQHA 21 (249)
Q Consensus 9 ~~~~~~~~~~~~~ 21 (249)
+.||++|++|.|+
T Consensus 34 s~~PRsYYrCt~~ 46 (78)
T 1wj2_A 34 NPYPRSYYKCTTP 46 (78)
T ss_dssp CSSCEEEEEEECS
T ss_pred CcCeeEEeecCcC
Confidence 4689999999873
No 4
>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}
Probab=13.65 E-value=25 Score=24.48 Aligned_cols=13 Identities=23% Similarity=0.429 Sum_probs=10.7
Q ss_pred CCCCCCCCCchhh
Q 025718 9 SSFPLKYHPLQHA 21 (249)
Q Consensus 9 ~~~~~~~~~~~~~ 21 (249)
+.||++|++|.+.
T Consensus 31 s~~PRsYYrCt~~ 43 (76)
T 2ayd_A 31 SPYPRSYYRCSSP 43 (76)
T ss_dssp CSSCEEEEEECST
T ss_pred CCCceeEeEcCCC
Confidence 4689999999874
No 5
>1w8x_P Protein P16, protein S, GPS; virus, P3 major capsid protein, P30 TAPE measure, P31 penton protein, P16 membrane protein; 4.20A {Enterobacteria phage PRD1} SCOP: i.6.1.1
Probab=9.87 E-value=1.4e+02 Score=21.29 Aligned_cols=40 Identities=15% Similarity=0.057 Sum_probs=11.9
Q ss_pred CCCchhhhhhhhcC--CCCCccccchhhHHHHHHHHHHHHHh
Q 025718 15 YHPLQHAVALAAQD--GYSSESELASTSFMQVLNKKCDAFYR 54 (249)
Q Consensus 15 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~ 54 (249)
-|-||++|..+-.+ ++.++-..+..+..+...+.+.+|+.
T Consensus 71 scgcnpavsaamaqgadlaskltdsitsqlndyasslndyla 112 (117)
T 1w8x_P 71 SCGCNPAVSAAMAQGADLASKLTDSITSQLNDYASSLNDYLA 112 (117)
T ss_dssp -----------------------CCCTTTTHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888655444 44444334444667777777776653
No 6
>3qkc_B Geranyl diphosphate synthase small subunit; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.20A {Antirrhinum majus}
Probab=9.60 E-value=5.1e+02 Score=21.68 Aligned_cols=51 Identities=10% Similarity=-0.091 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHhhhhccccccCccCCCCCcccCCCCChHHHHHHHHHHHHHHHHH
Q 025718 95 VPAIMMNNYANAINQLADVHIDKVNKPYLPLACGDFSMGEGLAITIASPLMAVAM 149 (249)
Q Consensus 95 l~~~l~~~a~~iiND~~D~e~D~inkp~RPi~sG~IS~~~A~~~~~~l~~~gl~l 149 (249)
.+.=+++.+.-+..|+.|.+. | +.||-+..+.....|+..+=.++..++-+
T Consensus 72 ~aiEliH~aSLIHDDI~D~d~-R---RG~pt~h~~~G~~~AIlaGD~Ll~~Af~~ 122 (273)
T 3qkc_B 72 AAVHLMHVAAYTHENLPLTDG-P---MSKSEIQHKFDPNIELLTGDGIIPFGLEL 122 (273)
T ss_dssp HHHHHHHHHHHHHHSCCBTTB-C---SSSSCCCCSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcccCcc-C---CCCCCchhhcCHHHHHHHHHHHHHHHHHH
Confidence 344567889999999998765 3 34777777888888888887777766544
No 7
>1co4_A AMT1, protein (activator of metallothionein 1); metal regulation, translation/regulation protein complex; NMR {Synthetic} SCOP: g.47.1.1
Probab=7.09 E-value=1.4e+02 Score=18.30 Aligned_cols=15 Identities=13% Similarity=0.082 Sum_probs=10.0
Q ss_pred ccccCccCCCCCccc
Q 025718 112 DVHIDKVNKPYLPLA 126 (249)
Q Consensus 112 D~e~D~inkp~RPi~ 126 (249)
|+....++++-||..
T Consensus 27 drpL~~ir~kGRP~t 41 (42)
T 1co4_A 27 DRPLKILKPRGRPPT 41 (42)
T ss_dssp SSCEEEECSCCCCSC
T ss_pred CCcceecCCCCCCCC
Confidence 555556677888864
No 8
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=6.91 E-value=1.3e+03 Score=21.13 Aligned_cols=11 Identities=27% Similarity=0.492 Sum_probs=7.4
Q ss_pred ccccCchhHHH
Q 025718 181 RWKGNPLMAAV 191 (249)
Q Consensus 181 ~lKr~~~~~~l 191 (249)
++||.+-.|.+
T Consensus 447 fwkr~~~~gA~ 457 (593)
T 2xq2_A 447 FWKKTTSKGAI 457 (593)
T ss_dssp HCTTCCHHHHH
T ss_pred HhCCCCHHHHH
Confidence 57787766664
No 9
>3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase, isoprene biosynthesis, isoprenyl pyrophosphate synthase, transferase; 1.90A {Mentha x piperita} PDB: 3krc_B* 3krf_B* 3kro_B* 3krp_B* 3oab_B* 3oac_B*
Probab=6.57 E-value=9.6e+02 Score=19.95 Aligned_cols=54 Identities=7% Similarity=-0.058 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHhhhhccccccCccCCCCCcccCCCCChHHHHHHHHHHHHHHHHHH
Q 025718 95 VPAIMMNNYANAINQLADVHIDKVNKPYLPLACGDFSMGEGLAITIASPLMAVAMG 150 (249)
Q Consensus 95 l~~~l~~~a~~iiND~~D~e~D~inkp~RPi~sG~IS~~~A~~~~~~l~~~gl~l~ 150 (249)
.+.=+++.+.-+..|+.+-|-|. +|.||-.-.+.....|+..+=.++..++-+.
T Consensus 67 ~aiEliH~aSLIHDDI~~dD~d~--RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~~l 120 (274)
T 3kra_B 67 AAIHLVHAAAYVHEHLPLTDGSR--PVSKPAIQHKYGPNVELLTGDGIVPFGFELL 120 (274)
T ss_dssp HHHHHHHHHHHHHHTCCCSSSSS--CCCSSCCCCSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcccCCcc--CCCCCCchhhcChHHHHHHHHHHHHHHHHHH
Confidence 34456788999999998333352 3677877788888888888877777666543
No 10
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=6.33 E-value=4.2e+02 Score=14.62 Aligned_cols=8 Identities=13% Similarity=0.223 Sum_probs=4.4
Q ss_pred ccCchhHH
Q 025718 183 KGNPLMAA 190 (249)
Q Consensus 183 Kr~~~~~~ 190 (249)
|+++.|..
T Consensus 1 kkhtiwev 8 (32)
T 2lx0_A 1 KKHTIWEV 8 (32)
T ss_dssp CCSSSHHH
T ss_pred CcchHHHH
Confidence 45565654
Done!