Query 025718
Match_columns 249
No_of_seqs 192 out of 1655
Neff 7.0
Searched_HMMs 13730
Date Mon Mar 25 16:06:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025718.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/025718hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1wj2a_ g.79.1.1 (A:) WRKY DNA 15.7 9.3 0.00068 24.7 -1.1 13 9-21 27-39 (71)
2 d1wjpa3 g.37.1.1 (A:67-107) Zi 7.5 39 0.0028 18.6 -0.1 29 10-38 12-40 (41)
3 d1rtra_ a.128.1.1 (A:) Farnesy 7.0 2.2E+02 0.016 21.8 4.5 55 95-150 68-122 (290)
4 d1rqja_ a.128.1.1 (A:) Farnesy 4.2 4.9E+02 0.035 19.8 4.9 55 94-149 70-124 (299)
5 d1co4a_ g.47.1.1 (A:) Zinc dom 3.8 1.4E+02 0.01 16.7 0.7 15 112-126 27-41 (42)
6 d1v74a_ d.243.1.1 (A:) Colicin 3.8 1.8E+02 0.013 19.6 1.4 12 123-134 3-14 (107)
7 d1ug8a_ d.68.7.1 (A:) Poly(A)- 3.6 1.1E+02 0.0078 20.1 0.1 9 3-11 32-40 (87)
8 d1szba2 g.3.11.1 (A:124-168) M 3.5 2.2E+02 0.016 15.6 1.4 16 5-20 1-16 (45)
9 d1dfxa2 g.41.5.2 (A:1-36) Desu 3.4 1.3E+02 0.0094 16.3 0.2 9 2-10 3-11 (36)
10 d1iwga8 f.35.1.1 (A:513-566,A: 3.3 7.7E+02 0.056 17.5 8.6 110 60-174 90-205 (222)
No 1
>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=15.66 E-value=9.3 Score=24.70 Aligned_cols=13 Identities=15% Similarity=0.396 Sum_probs=10.8
Q ss_pred CCCCCCCCCchhh
Q 025718 9 SSFPLKYHPLQHA 21 (249)
Q Consensus 9 ~~~~~~~~~~~~~ 21 (249)
+.||++|++|.+.
T Consensus 27 s~~pRsYYrCt~~ 39 (71)
T d1wj2a_ 27 NPYPRSYYKCTTP 39 (71)
T ss_dssp CSSCEEEEEEECS
T ss_pred CCCceEEEEcccc
Confidence 4689999999973
No 2
>d1wjpa3 g.37.1.1 (A:67-107) Zinc finger protein 295, ZNF295 {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.55 E-value=39 Score=18.57 Aligned_cols=29 Identities=21% Similarity=0.321 Sum_probs=22.6
Q ss_pred CCCCCCCCchhhhhhhhcCCCCCccccch
Q 025718 10 SFPLKYHPLQHAVALAAQDGYSSESELAS 38 (249)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 38 (249)
.|++++.--.|||..-.+..|...++.++
T Consensus 12 tfkssfsiwrhqvevhnqn~m~p~~~~ss 40 (41)
T d1wjpa3 12 TFKSSFSIWRHQVEVHNQNNMAPTSGPSS 40 (41)
T ss_dssp ECSSHHHHHHHHHHTSCCCCCCCCCCSCC
T ss_pred HHHHHHHHHHhhheeccccccCcccCCCC
Confidence 57888888889998877778888776553
No 3
>d1rtra_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Staphylococcus aureus [TaxId: 1280]}
Probab=6.98 E-value=2.2e+02 Score=21.85 Aligned_cols=55 Identities=11% Similarity=0.001 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHhhhhccccccCccCCCCCcccCCCCChHHHHHHHHHHHHHHHHHH
Q 025718 95 VPAIMMNNYANAINQLADVHIDKVNKPYLPLACGDFSMGEGLAITIASPLMAVAMG 150 (249)
Q Consensus 95 l~~~l~~~a~~iiND~~D~e~D~inkp~RPi~sG~IS~~~A~~~~~~l~~~gl~l~ 150 (249)
.+.=+++.+.-+..|+.|.|.|+. ++.+|-...+.....|...+-.+...+.-+.
T Consensus 68 ~avEllH~asLIHDDI~d~D~~~~-RRg~pt~~~~~g~~~Ail~Gd~l~~~a~~l~ 122 (290)
T d1rtra_ 68 IALEMIHTYSLIHDDLPAMDNDDY-RRGKLTNHKVYGEWTAILAGDALLTKAFELI 122 (290)
T ss_dssp HHHHHHHHHHHHHHHSTTTTCCSE-ETTEECHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcchhhhhhhhh-hhcchhhHHHhhhhHHHHcCcchhHHHHHHH
Confidence 445578999999999998887754 2345555566667777777776666555443
No 4
>d1rqja_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Escherichia coli [TaxId: 562]}
Probab=4.18 E-value=4.9e+02 Score=19.75 Aligned_cols=55 Identities=15% Similarity=0.170 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHhhhhccccccCccCCCCCcccCCCCChHHHHHHHHHHHHHHHHH
Q 025718 94 MVPAIMMNNYANAINQLADVHIDKVNKPYLPLACGDFSMGEGLAITIASPLMAVAM 149 (249)
Q Consensus 94 ~l~~~l~~~a~~iiND~~D~e~D~inkp~RPi~sG~IS~~~A~~~~~~l~~~gl~l 149 (249)
..+.=+++.+.-+..|+.|.|-|..+ |.+|-.-.+.....|...+-.+...++-.
T Consensus 70 A~aiEllH~asLiHDDI~d~d~~~~R-RG~pt~h~~~G~~~AIl~Gd~l~~~a~~~ 124 (299)
T d1rqja_ 70 AAAVECIHAYSLIHDDLPAMDDDDLR-RGLPTCHVKFGEANAILAGDALQTLAFSI 124 (299)
T ss_dssp HHHHHHHHHHHHHHHTSTTTTCCCEE-TTEECHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccchhhhhhhcc-cccccceeeeCcchhhhhcchHHHHHHHH
Confidence 34555789999999999998876432 23344444455667777776666555544
No 5
>d1co4a_ g.47.1.1 (A:) Zinc domain conserved in yeast copper-regulated transcription factors {Synthetic}
Probab=3.83 E-value=1.4e+02 Score=16.74 Aligned_cols=15 Identities=13% Similarity=0.082 Sum_probs=8.8
Q ss_pred ccccCccCCCCCccc
Q 025718 112 DVHIDKVNKPYLPLA 126 (249)
Q Consensus 112 D~e~D~inkp~RPi~ 126 (249)
|+..=+++++-||..
T Consensus 27 dRpL~~v~~kGRP~s 41 (42)
T d1co4a_ 27 DRPLKILKPRGRPPT 41 (42)
T ss_dssp SSCEEEECSCCCCSC
T ss_pred CcccEeecCCCCCCC
Confidence 344444577788864
No 6
>d1v74a_ d.243.1.1 (A:) Colicin D nuclease domain {Escherichia coli [TaxId: 562]}
Probab=3.83 E-value=1.8e+02 Score=19.59 Aligned_cols=12 Identities=42% Similarity=0.606 Sum_probs=8.9
Q ss_pred CcccCCCCChHH
Q 025718 123 LPLACGDFSMGE 134 (249)
Q Consensus 123 RPi~sG~IS~~~ 134 (249)
-|++||++|.++
T Consensus 3 ~pLds~~ftrkq 14 (107)
T d1v74a_ 3 DPLDSGRFSRKQ 14 (107)
T ss_dssp CTTCBTTBCHHH
T ss_pred CCccCccchHHH
Confidence 577788887776
No 7
>d1ug8a_ d.68.7.1 (A:) Poly(A)-specific ribonuclease PARN {Mouse (Mus musculus) [TaxId: 10090]}
Probab=3.61 E-value=1.1e+02 Score=20.08 Aligned_cols=9 Identities=44% Similarity=1.431 Sum_probs=7.2
Q ss_pred ccccCCCCC
Q 025718 3 LQINPCSSF 11 (249)
Q Consensus 3 ~~~~~~~~~ 11 (249)
++|.||.+|
T Consensus 32 l~lepCngF 40 (87)
T d1ug8a_ 32 LELDPCTGF 40 (87)
T ss_dssp EECCCCCSH
T ss_pred eecCCCcHH
Confidence 678888885
No 8
>d1szba2 g.3.11.1 (A:124-168) Mannose-binding protein associated serine protease 2, MASP2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.50 E-value=2.2e+02 Score=15.56 Aligned_cols=16 Identities=25% Similarity=0.432 Sum_probs=8.1
Q ss_pred ccCCCCCCCCCCCchh
Q 025718 5 INPCSSFPLKYHPLQH 20 (249)
Q Consensus 5 ~~~~~~~~~~~~~~~~ 20 (249)
|+.|...++.-++++|
T Consensus 1 IdEC~~~~~~~~~C~~ 16 (45)
T d1szba2 1 IDECQVAPGEAPTCDH 16 (45)
T ss_dssp CCTTCCCTTSCCSSSS
T ss_pred CcCCcCCCCCCCCCCC
Confidence 3556555554444444
No 9
>d1dfxa2 g.41.5.2 (A:1-36) Desulfoferrodoxin N-terminal domain {Desulfovibrio desulfuricans [TaxId: 876]}
Probab=3.39 E-value=1.3e+02 Score=16.35 Aligned_cols=9 Identities=22% Similarity=0.656 Sum_probs=0.0
Q ss_pred cccccCCCC
Q 025718 2 LLQINPCSS 10 (249)
Q Consensus 2 ~~~~~~~~~ 10 (249)
.+|+|+|..
T Consensus 3 ~~evYkC~~ 11 (36)
T d1dfxa2 3 HLEVYKCTH 11 (36)
T ss_dssp TTCEEECTT
T ss_pred cccEEEecc
No 10
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=3.30 E-value=7.7e+02 Score=17.52 Aligned_cols=110 Identities=7% Similarity=-0.093 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCccCCCCCcccCCCCChHHHHHHH
Q 025718 60 SCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNKPYLPLACGDFSMGEGLAIT 139 (249)
Q Consensus 60 ~~~~~~l~~~~g~~lA~~~~~~~~~~~l~~~l~~~l~~~l~~~a~~iiND~~D~e~D~inkp~RPi~sG~IS~~~A~~~~ 139 (249)
.....+..++.+..+... +...........+.+.....+..+.+++.+++.++-+.+++-+..+.-....+...+
T Consensus 90 ~ipl~~~~~~~~l~~~g~-----~~~~~~~~g~i~l~Gi~v~~~i~~~~~~~~~~~~~g~~~~~Ai~~a~~~~~~~i~~t 164 (222)
T d1iwga8 90 VVPLGVIGALLAATFRGL-----TNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKGLIEATLDAVRMRLRPILMT 164 (222)
T ss_dssp HHHHHHHHHHHHHHHTTC-----CBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCCCTTHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCC-----chhhhhcccccchhhhhhhHHHHHHHHhccccccccCCHHHHHHHHHHHHhhhhhhh
Q ss_pred HHHHHHHHHHHHHhchH------HHHHHHHHHHHHhhHhcC
Q 025718 140 IASPLMAVAMGIMLRSP------PLVIGFIIWCIVGGAYSI 174 (249)
Q Consensus 140 ~~l~~~gl~l~~~l~~~------~l~l~~l~~~~l~~~YS~ 174 (249)
.+..++|+.-..+.... .+..+...++...++.+.
T Consensus 165 ~ltti~gf~pl~~~~~~g~~~~~~la~~v~~Gll~s~~~~l 205 (222)
T d1iwga8 165 SLAFILGVMPLVISTGAGSGAQNAVGTGVMGGMVTATVLAI 205 (222)
T ss_dssp HHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHH
Done!