Query 025719
Match_columns 249
No_of_seqs 175 out of 510
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 08:47:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025719.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025719hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1792 Reticulon [Intracellul 100.0 1.2E-58 2.5E-63 408.6 21.5 220 27-247 4-227 (230)
2 PF02453 Reticulon: Reticulon; 100.0 1.7E-37 3.7E-42 258.8 -6.7 163 67-229 1-169 (169)
3 PF04842 DUF639: Plant protein 97.0 0.013 2.8E-07 59.4 13.3 135 67-207 506-650 (683)
4 KOG1792 Reticulon [Intracellul 93.7 0.29 6.3E-06 43.8 7.6 81 159-239 42-145 (230)
5 PF06398 Pex24p: Integral pero 91.5 2.9 6.3E-05 39.1 11.6 22 67-88 32-53 (359)
6 PF08372 PRT_C: Plant phosphor 88.1 3.3 7.1E-05 35.0 8.1 66 147-212 72-137 (156)
7 PF08372 PRT_C: Plant phosphor 86.8 0.12 2.7E-06 43.5 -1.2 53 41-93 54-111 (156)
8 COG0053 MMT1 Predicted Co/Zn/C 82.8 26 0.00056 32.4 12.1 120 100-220 83-212 (304)
9 KOG1726 HVA22/DP1 gene product 77.4 38 0.00083 30.3 10.8 54 187-240 57-124 (225)
10 PRK05702 flhB flagellar biosyn 70.5 1E+02 0.0022 29.4 13.8 18 157-174 131-148 (359)
11 PF10112 Halogen_Hydrol: 5-bro 70.2 59 0.0013 27.8 10.1 70 174-244 16-96 (199)
12 PF07234 DUF1426: Protein of u 67.5 12 0.00025 29.5 4.5 36 166-207 5-40 (117)
13 PF01484 Col_cuticle_N: Nemato 63.3 35 0.00076 22.6 5.9 13 199-211 15-27 (53)
14 COG1377 FlhB Flagellar biosynt 53.2 2.2E+02 0.0047 27.4 15.1 16 230-245 248-263 (363)
15 COG4987 CydC ABC-type transpor 53.1 2.6E+02 0.0057 28.4 13.9 58 176-233 142-203 (573)
16 PF02453 Reticulon: Reticulon; 51.4 6.1 0.00013 32.3 0.6 27 67-93 100-126 (169)
17 PF00873 ACR_tran: AcrB/AcrD/A 44.2 4.3E+02 0.0094 28.3 14.4 67 163-239 450-524 (1021)
18 PF10256 Erf4: Golgin subfamil 43.1 1.5E+02 0.0033 23.0 7.4 20 137-160 30-49 (118)
19 KOG3488 Dolichol phosphate-man 42.5 52 0.0011 24.4 4.2 34 159-192 38-71 (81)
20 PRK13109 flhB flagellar biosyn 36.3 3.9E+02 0.0084 25.5 14.2 17 157-173 133-149 (358)
21 COG1458 Predicted DNA-binding 35.2 66 0.0014 28.5 4.4 38 125-162 80-117 (221)
22 PF05297 Herpes_LMP1: Herpesvi 34.4 13 0.00029 34.7 0.0 22 54-75 17-41 (381)
23 PF06363 Picorna_P3A: Picornav 32.2 2.3E+02 0.0049 22.1 6.4 50 137-198 42-91 (100)
24 COG3887 Predicted signaling pr 32.0 4.4E+02 0.0096 27.2 10.1 56 186-245 32-87 (655)
25 PF01594 UPF0118: Domain of un 31.9 3.8E+02 0.0082 24.0 12.0 18 178-195 130-147 (327)
26 KOG1889 Putative phosphoinosit 31.7 1.2E+02 0.0026 30.8 6.0 80 54-134 486-576 (579)
27 PRK06433 NADH dehydrogenase su 28.2 1.4E+02 0.0031 22.6 4.8 35 70-104 22-57 (88)
28 PF04298 Zn_peptidase_2: Putat 27.1 4.6E+02 0.0099 23.5 9.8 106 69-197 108-218 (222)
29 KOG3747 Concentrative Na+-nucl 26.7 5.9E+02 0.013 25.9 9.8 42 72-113 149-192 (602)
30 PF05814 DUF843: Baculovirus p 26.1 3E+02 0.0064 20.9 8.1 51 191-241 27-79 (83)
31 KOG2628 Farnesyl cysteine-carb 26.0 2.5E+02 0.0054 24.8 6.4 62 175-244 137-199 (201)
32 PRK09579 multidrug efflux prot 25.6 8.8E+02 0.019 26.3 15.8 42 199-240 475-522 (1017)
33 PF06881 Elongin_A: RNA polyme 25.4 1.1E+02 0.0024 23.7 3.9 33 204-236 64-96 (109)
34 PF13198 DUF4014: Protein of u 25.0 2.4E+02 0.0052 20.9 5.2 24 198-221 37-60 (72)
35 COG2928 Uncharacterized conser 24.6 5.1E+02 0.011 23.2 8.5 18 227-244 79-96 (222)
36 PF04842 DUF639: Plant protein 24.2 8E+02 0.017 25.7 10.5 57 153-213 499-555 (683)
37 PF13677 MotB_plug: Membrane M 23.7 1.6E+02 0.0035 20.4 4.0 23 188-210 21-43 (58)
38 PHA02677 hypothetical protein; 23.6 1.5E+02 0.0033 23.5 4.2 33 191-223 5-37 (108)
39 PF13994 PgaD: PgaD-like prote 22.7 4.1E+02 0.009 21.4 7.0 10 114-123 77-86 (138)
40 KOG3873 Sphingomyelinase famil 22.2 4.5E+02 0.0097 25.6 7.8 50 175-224 348-400 (422)
41 PF05062 RICH: RICH domain; I 21.4 1.7E+02 0.0036 22.2 3.9 25 209-233 4-28 (82)
42 PRK03072 heat shock protein Ht 20.5 5.4E+02 0.012 23.4 8.0 21 73-93 4-24 (288)
43 PF04762 IKI3: IKI3 family; I 20.3 6.2E+02 0.013 27.3 9.3 112 101-228 794-922 (928)
44 PRK14416 membrane protein; Pro 20.2 4.4E+02 0.0096 23.1 6.9 42 49-90 77-123 (200)
No 1
>KOG1792 consensus Reticulon [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.2e-58 Score=408.56 Aligned_cols=220 Identities=58% Similarity=0.953 Sum_probs=210.4
Q ss_pred CCCCCCCCCCCcccccccccccccCCCCCCccccccCCCcccceecccccchhHHHHHHHHHHHHHHHHhccchhHHHHH
Q 025719 27 SSSSSDSDNEEPAAQSSVKADIYRLFGRERPVHQVFGGGKPADVFLWRNKKISAGVLGGATAIWVLFELFEYHLLTLVCH 106 (249)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~r~f~r~~p~h~~Lgggk~aDlLlWrn~k~S~~vf~~~t~~w~Lf~~~~ysllslv~~ 106 (249)
++|++|+++++.++++ .+++.+|+|+||+|+|+++|||+++|+++|||+|.||.+|++++++|++|+..+|+.+|++|+
T Consensus 4 ~~s~~~~~~~~~~~~s-~~~~~~rlf~~~~~v~~~lg~~~vaDlllWrdkk~s~~vl~~~~~~w~lf~~~~~~~vt~~~~ 82 (230)
T KOG1792|consen 4 LISSSNSESEKLKFTS-AIEKSSRLFGREGPVHKVLGGGKVADLLLWRDKKKSGTVLGVATALWLLFEFFSYNSVTLLCH 82 (230)
T ss_pred cccccccccccccccc-ccchhccccCCCccccccCCCCchhheeeeeccccceeehHHHHHHHHHHHHhhhhHHHHHHH
Confidence 3444488888876666 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhcc-CCC--CCC-ceecChHHHHHHHHHHHHHHHHHHHHHhhhhcccChHHHHHHHHHHHHH
Q 025719 107 TLILALAILFLWANAHTFIKK-APP--CIP-EVHLPEEPFLQVASAFRIELNHAFAVLRSIASGRDLKSFLMAIAALWVL 182 (249)
Q Consensus 107 ~~ll~l~~lFl~s~~~~~i~k-~~~--~~P-~~~isee~v~~~a~~v~~~iN~~l~~lr~i~~g~d~~~~lkv~v~L~vl 182 (249)
++++++.+.|.|++...++|| ++| ..| ++++|||.+++++++++.++|+.+..+|++++|||+++|++++++||++
T Consensus 83 i~ll~~~i~F~w~~~~~~~~k~~~~~~~lp~~i~ipee~~~~~a~~~~~~in~~l~~l~~ia~~~d~~~~lk~~v~lw~l 162 (230)
T KOG1792|consen 83 ILLLALAILFLWSKAVTFLNKKSEPGAYLPVEITIPEEFVLALASSLRVEINQALSELRDIALGRDLKDFLKVAVGLWIL 162 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCccccCCceeecCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 999999999999999999988 666 688 9999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcc
Q 025719 183 SVVGSWCNFLTLFYIALVLLHIVPVLYEKYEDKIDPLAEKAMIEIKKQYAVFDAKVLSKIPVKAK 247 (249)
Q Consensus 183 s~vGs~~s~lTLlyi~~v~~fTvP~lYekyqd~ID~~~~k~~~~i~~~y~~~~~kv~skiP~~~k 247 (249)
+++|+|||++|++|+|++++||+|++||+|||+||+++++++.+++++|+++|+|+++|||+|++
T Consensus 163 S~vGs~fn~lTll~ig~v~~~TvP~~YEky~d~ID~~~~~~~~~~k~~~~~~~~k~l~kip~~~~ 227 (230)
T KOG1792|consen 163 SYVGSLFNFLTLLYIGLVLLFTVPVLYEKYEDQIDPYLGKVMEELKKHYRKFDEKVLSKIPAGPR 227 (230)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcccchhHHhHHHHhHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999864
No 2
>PF02453 Reticulon: Reticulon; InterPro: IPR003388 Eukaryotic proteins of the reticulon (RTN) family all share an association with the endoplasmic reticulum (ER). Whereas amino-terminal regions are not related to one another, all reticulon proteins share a 200 amino acid residue region of sequence similarity at the C-terminal. This region contains two large hydrophobic regions separated by a 66 residue hydrophilic segment. The conserved hydrophobic C-terminal portion has been shown to play an essential role in the association of reticulons with the ER membrane. The hydrophobic portions are supposed to be membrane-embedded and the hydrophilic 66 residue localized to the lumenal/extracellular face of the membrane. Most reticulons have a di-lysine ER retention motif at the C-terminal. Because of their likely association with the rough as well as the smooth ER, the reticulons might play some role in transport processes or in regulation of intracellular calcium levels. It has been suggested that the reticulons may be serving as ER-associated channel-like complexes [, , , ].; GO: 0005783 endoplasmic reticulum; PDB: 2KO2_A 2JV5_A 2G31_A.
Probab=100.00 E-value=1.7e-37 Score=258.83 Aligned_cols=163 Identities=37% Similarity=0.636 Sum_probs=48.3
Q ss_pred ccceecccccchhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHhhhccCC------CCCCceecChH
Q 025719 67 PADVFLWRNKKISAGVLGGATAIWVLFELFEYHLLTLVCHTLILALAILFLWANAHTFIKKAP------PCIPEVHLPEE 140 (249)
Q Consensus 67 ~aDlLlWrn~k~S~~vf~~~t~~w~Lf~~~~ysllslv~~~~ll~l~~lFl~s~~~~~i~k~~------~~~P~~~isee 140 (249)
++|+++||||+.||.+|++++++|+++++.++|++|++|+++++.+++.+++....+++++.+ ++.++.++|||
T Consensus 1 V~dll~W~~~~~S~~v~~~~~~~~~l~~~~~~s~is~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (169)
T PF02453_consen 1 VADLLLWRDPKKSGIVFGAILLFWLLFWLFNYSLISLVSYILLLLLAISFLYRLLSKVLSRSPKGPFKEPLDYDLEISEE 80 (169)
T ss_dssp ----------------------------------------------------THCCCTCCHHHHCTTHHHHCHHHHHCCH
T ss_pred CceeeEecCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCccCCccccccccHH
Confidence 589999999999999999999999999999999999999999999999999888888777755 34447899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcccChHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhchhhHHHHH
Q 025719 141 PFLQVASAFRIELNHAFAVLRSIASGRDLKSFLMAIAALWVLSVVGSWCNFLTLFYIALVLLHIVPVLYEKYEDKIDPLA 220 (249)
Q Consensus 141 ~v~~~a~~v~~~iN~~l~~lr~i~~g~d~~~~lkv~v~L~vls~vGs~~s~lTLlyi~~v~~fTvP~lYekyqd~ID~~~ 220 (249)
.++++++.+.+.+|..+..+|+++.++|++.+++++++||+++++|+++|++||+|++++++||+|.+|++||++||+++
T Consensus 81 ~~~~~~~~~~~~~n~~~~~~~~l~~~~~~~~~l~~~~~l~~l~~lg~~~s~~~L~~l~~~~~f~~P~ly~~~~~~Id~~~ 160 (169)
T PF02453_consen 81 RVERLADSVAEWINSVLSWLRRLVFGEDPKKSLKVFVVLYILSFLGSWFSFLTLLYLGVLGAFTVPKLYEKYQEEIDQYV 160 (169)
T ss_dssp HHHHHHHHCCCCCCHHHHHHHCCCHCT-TTGGG-----------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 025719 221 EKAMIEIKK 229 (249)
Q Consensus 221 ~k~~~~i~~ 229 (249)
++++++++|
T Consensus 161 ~~~~~~~~k 169 (169)
T PF02453_consen 161 AKVKEKVKK 169 (169)
T ss_dssp ---------
T ss_pred HHHHHHhcC
Confidence 998887764
No 3
>PF04842 DUF639: Plant protein of unknown function (DUF639); InterPro: IPR006927 The sequences in this family are plant proteins of unknown function.
Probab=97.01 E-value=0.013 Score=59.35 Aligned_cols=135 Identities=16% Similarity=0.145 Sum_probs=89.9
Q ss_pred ccceecccccchhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHhhhccC--------CCC-CC-cee
Q 025719 67 PADVFLWRNKKISAGVLGGATAIWVLFELFEYHLLTLVCHTLILALAILFLWANAHTFIKKA--------PPC-IP-EVH 136 (249)
Q Consensus 67 ~aDlLlWrn~k~S~~vf~~~t~~w~Lf~~~~ysllslv~~~~ll~l~~lFl~s~~~~~i~k~--------~~~-~P-~~~ 136 (249)
+.++..|+||.+|..+++..+.+.+ -.|.+| +.-..++.+++..+|.....-.++. ||+ +. +-.
T Consensus 506 ~~~l~~We~P~kt~~Fl~~~~~iI~-r~wl~Y-----~~p~~Ll~~a~~Ml~~r~~~~~g~~~~~v~V~~pP~~nTvEqi 579 (683)
T PF04842_consen 506 LQKLASWEEPLKTLVFLALFLYIIY-RGWLGY-----IFPAFLLFSAVFMLWLRYQGRLGKSFGEVTVRDPPPKNTVEQI 579 (683)
T ss_pred HHHHhhccCcchhHHHHHHHHHHHH-HHHHHH-----HHHHHHHHHHHHHHHHHhhhccCCccceEEecCCCCccHHHHH
Confidence 3588899999999998888765321 123333 2233333444444664433222222 221 11 111
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHhhhhcccChHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 025719 137 LPEEPFLQVASAFRIELNHAFAVLRSIASGRDLKSFLMAIAALWVLSVVGSWCNFLTLFYIALVLLHIVPV 207 (249)
Q Consensus 137 isee~v~~~a~~v~~~iN~~l~~lr~i~~g~d~~~~lkv~v~L~vls~vGs~~s~lTLlyi~~v~~fTvP~ 207 (249)
+.=.....-+.......|-++-++|.|.+.+.++.+-+|++.|..++.+-.++.+--++...++-.||-..
T Consensus 580 lalQ~Ais~~E~~iQ~~NI~LLKiRsllls~~PqaT~~Va~~Ll~~A~~LavvP~kyil~~v~l~~FTre~ 650 (683)
T PF04842_consen 580 LALQEAISQLEEYIQAANIVLLKIRSLLLSKFPQATNKVALALLGLAAVLAVVPFKYILLFVFLEVFTRES 650 (683)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 11122233345566778999999999999999999999999999999999999999999999999998643
No 4
>KOG1792 consensus Reticulon [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.67 E-value=0.29 Score=43.79 Aligned_cols=81 Identities=16% Similarity=0.170 Sum_probs=66.9
Q ss_pred HHhhhhcccChHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhc-----------------------hhh
Q 025719 159 VLRSIASGRDLKSFLMAIAALWVLSVVGSWCNFLTLFYIALVLLHIVPVLYEKY-----------------------EDK 215 (249)
Q Consensus 159 ~lr~i~~g~d~~~~lkv~v~L~vls~vGs~~s~lTLlyi~~v~~fTvP~lYeky-----------------------qd~ 215 (249)
...|++.+||.+.++.+..+..++..+-.+++..++..++.+++++++.+|..+ |+.
T Consensus 42 ~vaDlllWrdkk~s~~vl~~~~~~w~lf~~~~~~~vt~~~~i~ll~~~i~F~w~~~~~~~~k~~~~~~~lp~~i~ipee~ 121 (230)
T KOG1792|consen 42 KVADLLLWRDKKKSGTVLGVATALWLLFEFFSYNSVTLLCHILLLALAILFLWSKAVTFLNKKSEPGAYLPVEITIPEEF 121 (230)
T ss_pred chhheeeeeccccceeehHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCceeecCHHH
Confidence 467899999999999999999999999999999999999999999888877765 566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 025719 216 IDPLAEKAMIEIKKQYAVFDAKVL 239 (249)
Q Consensus 216 ID~~~~k~~~~i~~~y~~~~~kv~ 239 (249)
++++...+..+++...+++.+-.+
T Consensus 122 ~~~~a~~~~~~in~~l~~l~~ia~ 145 (230)
T KOG1792|consen 122 VLALASSLRVEINQALSELRDIAL 145 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 777888888888877777665433
No 5
>PF06398 Pex24p: Integral peroxisomal membrane peroxin; InterPro: IPR010482 Peroxisomes play diverse roles in the cell, compartmentalising many activities related to lipid metabolism and functioning in the decomposition of toxic hydrogen peroxide. Sequence similarity was identified between two hypothetical proteins and the peroxin integral membrane protein Pex24p [].
Probab=91.47 E-value=2.9 Score=39.11 Aligned_cols=22 Identities=18% Similarity=0.176 Sum_probs=17.3
Q ss_pred ccceecccccchhHHHHHHHHH
Q 025719 67 PADVFLWRNKKISAGVLGGATA 88 (249)
Q Consensus 67 ~aDlLlWrn~k~S~~vf~~~t~ 88 (249)
+.++++|+|+..+-.++...+.
T Consensus 32 vl~il~W~~p~~t~~~L~l~t~ 53 (359)
T PF06398_consen 32 VLRILTWTNPDYTLSFLLLYTF 53 (359)
T ss_pred HHHeEEeCCCCcchHHHHHHHH
Confidence 4679999999988777666654
No 6
>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).
Probab=88.10 E-value=3.3 Score=35.02 Aligned_cols=66 Identities=17% Similarity=0.072 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHhhhhcccChHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhc
Q 025719 147 SAFRIELNHAFAVLRSIASGRDLKSFLMAIAALWVLSVVGSWCNFLTLFYIALVLLHIVPVLYEKY 212 (249)
Q Consensus 147 ~~v~~~iN~~l~~lr~i~~g~d~~~~lkv~v~L~vls~vGs~~s~lTLlyi~~v~~fTvP~lYeky 212 (249)
+.+...+......++.++..+|...+..+++++++.+++--+..+..++.+..+-.++=|.+-.++
T Consensus 72 Q~vlgd~At~gERl~allsWrdP~aT~lf~~~clv~avvly~vP~r~l~l~~gly~~r~P~~R~~~ 137 (156)
T PF08372_consen 72 QNVLGDVATQGERLQALLSWRDPRATALFVVFCLVAAVVLYFVPFRVLVLIWGLYKLRHPRFRNPL 137 (156)
T ss_pred HHHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCccccCCC
Confidence 334445566668899999999999999999999999999888888888877777777777765533
No 7
>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).
Probab=86.77 E-value=0.12 Score=43.55 Aligned_cols=53 Identities=21% Similarity=0.295 Sum_probs=33.2
Q ss_pred ccccccccccCCCCCCccccccC-----CCcccceecccccchhHHHHHHHHHHHHHH
Q 025719 41 QSSVKADIYRLFGRERPVHQVFG-----GGKPADVFLWRNKKISAGVLGGATAIWVLF 93 (249)
Q Consensus 41 ~~~~~~~~~r~f~r~~p~h~~Lg-----ggk~aDlLlWrn~k~S~~vf~~~t~~w~Lf 93 (249)
+.+++.+..|+-.--.-+-.++| |.++..++.||||..|++...+.++.-+.+
T Consensus 54 ~~~lr~Rydrlr~va~rvQ~vlgd~At~gERl~allsWrdP~aT~lf~~~clv~avvl 111 (156)
T PF08372_consen 54 PDSLRMRYDRLRSVAGRVQNVLGDVATQGERLQALLSWRDPRATALFVVFCLVAAVVL 111 (156)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHHHH
Confidence 34566555555321122334444 446889999999999999887776543333
No 8
>COG0053 MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=82.79 E-value=26 Score=32.42 Aligned_cols=120 Identities=19% Similarity=0.267 Sum_probs=59.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCce--------ecChHHHHHHHHHHHHHHHHHHHHHhhhhcccChHH
Q 025719 100 LLTLVCHTLILALAILFLWANAHTFIKKAPPCIPEV--------HLPEEPFLQVASAFRIELNHAFAVLRSIASGRDLKS 171 (249)
Q Consensus 100 llslv~~~~ll~l~~lFl~s~~~~~i~k~~~~~P~~--------~isee~v~~~a~~v~~~iN~~l~~lr~i~~g~d~~~ 171 (249)
+.+++.-++++..++..+|.....+++..+++.|.. .+..+.+.++...+...+|.-...--..=.--|...
T Consensus 83 l~sl~~~~~i~~~g~~i~~~a~~~~~~~~~~~~~~~~~~v~l~s~~~~~~l~~~~~~~~kk~~S~aL~Ada~h~~sD~~t 162 (304)
T COG0053 83 LASLIVSILIFAAGFEILLEAIKRLISPQPVEPPLLALGVALISIVIKEALYRYLRRVGKKTNSQALIADALHHRSDVLT 162 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHhHHHHHHHHH
Confidence 344444444444555556666666666443333311 111222333333333333332211111111126777
Q ss_pred HHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHHH-HHHHhchhhHHHHH
Q 025719 172 FLMAIAALWVLSVVG-SWCNFLTLFYIALVLLHIVP-VLYEKYEDKIDPLA 220 (249)
Q Consensus 172 ~lkv~v~L~vls~vG-s~~s~lTLlyi~~v~~fTvP-~lYekyqd~ID~~~ 220 (249)
++.+++++- ..+.| -|.....=+.+++..+.+.- .++|.....+|+-+
T Consensus 163 s~~~lvgl~-~~~~g~~~lD~i~a~~I~~~Il~~~~~~~~~s~~~L~d~~~ 212 (304)
T COG0053 163 SLAVLVGLL-GSLLGWPWLDPLAALLISLYILKTGFRLFKESVNELMDAAL 212 (304)
T ss_pred HHHHHHHHH-HHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCC
Confidence 777777777 77777 55666665666665555544 55666666666433
No 9
>KOG1726 consensus HVA22/DP1 gene product-related proteins [Defense mechanisms]
Probab=77.44 E-value=38 Score=30.33 Aligned_cols=54 Identities=26% Similarity=0.450 Sum_probs=33.7
Q ss_pred hhhhHHHHHHHHHHHHHHHH------HHHH--------hchhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025719 187 SWCNFLTLFYIALVLLHIVP------VLYE--------KYEDKIDPLAEKAMIEIKKQYAVFDAKVLS 240 (249)
Q Consensus 187 s~~s~lTLlyi~~v~~fTvP------~lYe--------kyqd~ID~~~~k~~~~i~~~y~~~~~kv~s 240 (249)
+|+.+...+-+.|++-...| .+|+ +||++||+++.+++...-++...+-.|.++
T Consensus 57 sw~P~Y~e~Kl~fv~wL~~p~t~G~~~vY~~f~~p~ls~~E~eid~~l~~~k~~~~~~a~~~~~r~l~ 124 (225)
T KOG1726|consen 57 SWFPFYSEFKLAFVIWLLSPATKGASYVYRKFLRPFLSKHEEEIDRMLVEAKERVYDAAVSILKRALN 124 (225)
T ss_pred HHhhhHHHHHHHHHhhccccccCccHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555444333 3444 679999999999988877666555555544
No 10
>PRK05702 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=70.52 E-value=1e+02 Score=29.42 Aligned_cols=18 Identities=22% Similarity=0.305 Sum_probs=10.6
Q ss_pred HHHHhhhhcccChHHHHH
Q 025719 157 FAVLRSIASGRDLKSFLM 174 (249)
Q Consensus 157 l~~lr~i~~g~d~~~~lk 174 (249)
+..++++++.+.+..++|
T Consensus 131 i~G~KriFS~~~l~el~K 148 (359)
T PRK05702 131 LKGLKRMFSAQGLVELLK 148 (359)
T ss_pred HHHHHHhcCHHHHHHHHH
Confidence 455666666666555443
No 11
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=70.19 E-value=59 Score=27.82 Aligned_cols=70 Identities=17% Similarity=0.230 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhchhhH-----------HHHHHHHHHHHHHHHHHHHHHHHhhC
Q 025719 174 MAIAALWVLSVVGSWCNFLTLFYIALVLLHIVPVLYEKYEDKI-----------DPLAEKAMIEIKKQYAVFDAKVLSKI 242 (249)
Q Consensus 174 kv~v~L~vls~vGs~~s~lTLlyi~~v~~fTvP~lYekyqd~I-----------D~~~~k~~~~i~~~y~~~~~kv~ski 242 (249)
.+++..|++++.|.-.+++--+.++.++.+.+.....+.+..- .+++.....+.+++++++. +...+|
T Consensus 16 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~k~~~~~gls~~e~~~~~~~l~ea~~~i~~i~-~~~~~i 94 (199)
T PF10112_consen 16 LIAAITFLVSFFGFDHSFLLSLLIGAVAFAVVYLFGKRRQRRKFLKEAGLSDREYEYIREILEEAKEKIRRIE-KAIKRI 94 (199)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcccccchhHhhhcCCChhHHHHHHHHHHHHHHHHHHHH-HHHHHc
Confidence 3455666666666555665555555555555544444332211 2355666667777777666 444455
Q ss_pred CC
Q 025719 243 PV 244 (249)
Q Consensus 243 P~ 244 (249)
+.
T Consensus 95 ~~ 96 (199)
T PF10112_consen 95 RD 96 (199)
T ss_pred CC
Confidence 54
No 12
>PF07234 DUF1426: Protein of unknown function (DUF1426); InterPro: IPR009871 This family consists of several Banana bunchy top virus proteins of around 120 residues in length. Q9IGU4 from SWISSPROT is annotated a movement protein whereas most other family members are hypothetical. The function of this family is unknown.
Probab=67.47 E-value=12 Score=29.50 Aligned_cols=36 Identities=31% Similarity=0.414 Sum_probs=27.5
Q ss_pred ccChHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 025719 166 GRDLKSFLMAIAALWVLSVVGSWCNFLTLFYIALVLLHIVPV 207 (249)
Q Consensus 166 g~d~~~~lkv~v~L~vls~vGs~~s~lTLlyi~~v~~fTvP~ 207 (249)
++..|.|+.++. ++|.+|-..|++||-..++|-+|+
T Consensus 5 tERVKlfFEwFL------F~~AIFiAItIlYILLalL~EvPk 40 (117)
T PF07234_consen 5 TERVKLFFEWFL------FFGAIFIAITILYILLALLFEVPK 40 (117)
T ss_pred HHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHhhHH
Confidence 445566665433 357778888999999999999997
No 13
>PF01484 Col_cuticle_N: Nematode cuticle collagen N-terminal domain; InterPro: IPR002486 The function of this domain is unknown. It is found in the N-terminal region of nematode cuticle collagens (see IPR008160 from INTERPRO). Cuticle is a tough elastic structure secreted by hypodermal cells and is primarily composed of collagen proteins [, ].; GO: 0042302 structural constituent of cuticle
Probab=63.34 E-value=35 Score=22.55 Aligned_cols=13 Identities=38% Similarity=0.634 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHh
Q 025719 199 LVLLHIVPVLYEK 211 (249)
Q Consensus 199 ~v~~fTvP~lYek 211 (249)
+.+++++|.+|..
T Consensus 15 ~~~l~~~p~i~~~ 27 (53)
T PF01484_consen 15 LSCLITVPSIYND 27 (53)
T ss_pred HHHHHHHHHHHHH
Confidence 4678899999974
No 14
>COG1377 FlhB Flagellar biosynthesis pathway, component FlhB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=53.24 E-value=2.2e+02 Score=27.42 Aligned_cols=16 Identities=19% Similarity=0.401 Sum_probs=10.5
Q ss_pred HHHHHHHHHHhhCCCC
Q 025719 230 QYAVFDAKVLSKIPVK 245 (249)
Q Consensus 230 ~y~~~~~kv~skiP~~ 245 (249)
|.+..+++..+.+|++
T Consensus 248 ~re~a~~rm~~~Vp~A 263 (363)
T COG1377 248 QREIARRRMMSDVPKA 263 (363)
T ss_pred HHHHHHHHHHhhCCCC
Confidence 3344666777888874
No 15
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=53.14 E-value=2.6e+02 Score=28.42 Aligned_cols=58 Identities=17% Similarity=0.253 Sum_probs=37.5
Q ss_pred HHHHHHHHH-HhhhhhHHHHHHH---HHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHH
Q 025719 176 IAALWVLSV-VGSWCNFLTLFYI---ALVLLHIVPVLYEKYEDKIDPLAEKAMIEIKKQYAV 233 (249)
Q Consensus 176 ~v~L~vls~-vGs~~s~lTLlyi---~~v~~fTvP~lYekyqd~ID~~~~k~~~~i~~~y~~ 233 (249)
+++++++.. ..++|+.+.=+.+ -.+.++.+|.+.-++-...++.+...+...+.+...
T Consensus 142 a~~~~~~~~i~L~f~~~~~Alll~~~ll~~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td 203 (573)
T COG4987 142 ALVLIAVVTIGLSFFSIPLALLLGLILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTD 203 (573)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 344444333 3446665544444 445566789999999999998888877776665543
No 16
>PF02453 Reticulon: Reticulon; InterPro: IPR003388 Eukaryotic proteins of the reticulon (RTN) family all share an association with the endoplasmic reticulum (ER). Whereas amino-terminal regions are not related to one another, all reticulon proteins share a 200 amino acid residue region of sequence similarity at the C-terminal. This region contains two large hydrophobic regions separated by a 66 residue hydrophilic segment. The conserved hydrophobic C-terminal portion has been shown to play an essential role in the association of reticulons with the ER membrane. The hydrophobic portions are supposed to be membrane-embedded and the hydrophilic 66 residue localized to the lumenal/extracellular face of the membrane. Most reticulons have a di-lysine ER retention motif at the C-terminal. Because of their likely association with the rough as well as the smooth ER, the reticulons might play some role in transport processes or in regulation of intracellular calcium levels. It has been suggested that the reticulons may be serving as ER-associated channel-like complexes [, , , ].; GO: 0005783 endoplasmic reticulum; PDB: 2KO2_A 2JV5_A 2G31_A.
Probab=51.35 E-value=6.1 Score=32.28 Aligned_cols=27 Identities=15% Similarity=-0.084 Sum_probs=11.8
Q ss_pred ccceecccccchhHHHHHHHHHHHHHH
Q 025719 67 PADVFLWRNKKISAGVLGGATAIWVLF 93 (249)
Q Consensus 67 ~aDlLlWrn~k~S~~vf~~~t~~w~Lf 93 (249)
..+++.|+|++.|..++.+..++..+.
T Consensus 100 ~~~l~~~~~~~~~l~~~~~l~~l~~lg 126 (169)
T PF02453_consen 100 LRRLVFGEDPKKSLKVFVVLYILSFLG 126 (169)
T ss_dssp HHCCCHCT-TTGGG-------------
T ss_pred HHHHHcCccHHHHHHHHHHHHHHHHHH
Confidence 578999999999999877665544443
No 17
>PF00873 ACR_tran: AcrB/AcrD/AcrF family; InterPro: IPR001036 The Escherichia coli acrA and acrB genes encode a multi-drug efflux system that is believed to protect the bacterium against hydrophobic inhibitors []. The E. coli AcrB protein is a transporter that is energized by proton-motive force and that shows the widest substrate specificity among all known multidrug pumps, ranging from most of the currently used antibiotics, disinfectants, dyes, and detergents to simple solvents. The structure of ligand-free AcrB shows that it is a homotrimer of 110kDa per subunit. Each subunit contains 12 transmembrane helices and two large periplasmic domains (each exceeding 300 residues) between helices 1 and 2, and helices 7 and 8. X-ray analysis of the overexpressed AcrB protein demonstrated that the three periplasmic domains form, in the centre, a funnel-like structure and a connected narrow (or closed) pore. The pore is opened to the periplasm through three vestibules located at subunit interfaces. These vestibules were proposed to allow direct access of drugs from the periplasm as well as the outer leaflet of the cytoplasmic membrane. The three transmembrane domains of AcrB protomers form a large, 30A-wide central cavity that spans the cytoplasmic membrane and extends to the cytoplasm X-ray crystallographic structures of the trimeric AcrB pump from E. coli with four structurally diverse ligands demonstrated that three molecules of ligand bind simultaneously to the extremely large central cavity of 5000 cubic angstroms, primarily by hydrophobic, aromatic stacking and van der Waals interactions. Each ligand uses a slightly different subset of AcrB residues for binding. The bound ligand molecules often interact with each other, stabilising the binding. ; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2V50_B 1T9U_A 2HRT_B 3NOC_A 3NOG_A 4DX7_A 1OYD_A 3AOB_A 1T9V_A 4DX6_B ....
Probab=44.25 E-value=4.3e+02 Score=28.34 Aligned_cols=67 Identities=16% Similarity=0.242 Sum_probs=40.5
Q ss_pred hhcccChHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhc----hh----hHHHHHHHHHHHHHHHHHHH
Q 025719 163 IASGRDLKSFLMAIAALWVLSVVGSWCNFLTLFYIALVLLHIVPVLYEKY----ED----KIDPLAEKAMIEIKKQYAVF 234 (249)
Q Consensus 163 i~~g~d~~~~lkv~v~L~vls~vGs~~s~lTLlyi~~v~~fTvP~lYeky----qd----~ID~~~~k~~~~i~~~y~~~ 234 (249)
++.......+++-+....+++.+.|+ ++..+.+|.++... +. ......++....+++.|.++
T Consensus 450 ~f~~G~~g~~~~~l~~~v~~al~~Sl----------lval~~~P~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~Y~~l 519 (1021)
T PF00873_consen 450 LFMPGIAGQFFRPLALTVIIALIASL----------LVALTLVPALAALFLKPKKKSSKKRFFSKFDRFFDRLQRGYRRL 519 (1021)
T ss_dssp GGSBHHHHHHHHHHHHHHHHHHHHHH----------HHHHTTHHHHHHHCS----TT-CCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhcCCchHHHHHHHHHHHHHHHHHHH----------HHHHHhhhhhhhhhhccccccccccccccccccccccccchhhh
Confidence 33444566666666666666666665 56677788776532 11 23344556666678888876
Q ss_pred HHHHH
Q 025719 235 DAKVL 239 (249)
Q Consensus 235 ~~kv~ 239 (249)
-.+++
T Consensus 520 L~~~L 524 (1021)
T PF00873_consen 520 LRWAL 524 (1021)
T ss_dssp HHHHH
T ss_pred hhhhh
Confidence 66665
No 18
>PF10256 Erf4: Golgin subfamily A member 7/ERF4 family; InterPro: IPR019383 Proteins in this entry include Golgin subfamily A member 7 and the Ras modification protein ERF4.
Probab=43.12 E-value=1.5e+02 Score=23.04 Aligned_cols=20 Identities=15% Similarity=0.278 Sum_probs=12.9
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHH
Q 025719 137 LPEEPFLQVASAFRIELNHAFAVL 160 (249)
Q Consensus 137 isee~v~~~a~~v~~~iN~~l~~l 160 (249)
||++.+.++. ..+|..+...
T Consensus 30 is~~ef~~iI----~~IN~~l~~a 49 (118)
T PF10256_consen 30 ISPEEFEEII----NTINQILKEA 49 (118)
T ss_pred CCHHHHHHHH----HHHHHHHHHH
Confidence 8888886544 4567766544
No 19
>KOG3488 consensus Dolichol phosphate-mannose regulatory protein (DPM2) [Posttranslational modification, protein turnover, chaperones]
Probab=42.49 E-value=52 Score=24.37 Aligned_cols=34 Identities=15% Similarity=0.385 Sum_probs=28.2
Q ss_pred HHhhhhcccChHHHHHHHHHHHHHHHHhhhhhHH
Q 025719 159 VLRSIASGRDLKSFLMAIAALWVLSVVGSWCNFL 192 (249)
Q Consensus 159 ~lr~i~~g~d~~~~lkv~v~L~vls~vGs~~s~l 192 (249)
..+..++-|++.-..-++++++.+..+|.+.+..
T Consensus 38 iihKyFLpr~yAi~iPvaagl~ll~lig~Fis~v 71 (81)
T KOG3488|consen 38 IIHKYFLPREYAITIPVAAGLFLLCLIGTFISLV 71 (81)
T ss_pred HHHHHhcChhHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 4566788889988999999999999999886654
No 20
>PRK13109 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=36.33 E-value=3.9e+02 Score=25.48 Aligned_cols=17 Identities=18% Similarity=0.112 Sum_probs=9.5
Q ss_pred HHHHhhhhcccChHHHH
Q 025719 157 FAVLRSIASGRDLKSFL 173 (249)
Q Consensus 157 l~~lr~i~~g~d~~~~l 173 (249)
+..++++++.+++..++
T Consensus 133 i~GlKriFS~~~l~el~ 149 (358)
T PRK13109 133 MKGWTRIFGTSGQVEFL 149 (358)
T ss_pred HHHHHHhcCHHHHHHHH
Confidence 45556666666655444
No 21
>COG1458 Predicted DNA-binding protein containing PIN domain [General function prediction only]
Probab=35.16 E-value=66 Score=28.45 Aligned_cols=38 Identities=26% Similarity=0.385 Sum_probs=31.0
Q ss_pred hccCCCCCCceecChHHHHHHHHHHHHHHHHHHHHHhh
Q 025719 125 IKKAPPCIPEVHLPEEPFLQVASAFRIELNHAFAVLRS 162 (249)
Q Consensus 125 i~k~~~~~P~~~isee~v~~~a~~v~~~iN~~l~~lr~ 162 (249)
+-+.+|+.-++.||-+.+.+.+..++..+|+++....+
T Consensus 80 ivkKtPnryevkiPa~ifyeyV~diR~RinkGlRvAE~ 117 (221)
T COG1458 80 IVKKTPNRYEVKIPAAIFYEYVEDIRERINKGLRVAEE 117 (221)
T ss_pred eEecCCCceeecCcHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 34445555689999999999999999999999876554
No 22
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=34.42 E-value=13 Score=34.68 Aligned_cols=22 Identities=18% Similarity=0.196 Sum_probs=0.0
Q ss_pred CCCccccccCCCcc---cceecccc
Q 025719 54 RERPVHQVFGGGKP---ADVFLWRN 75 (249)
Q Consensus 54 r~~p~h~~Lgggk~---aDlLlWrn 75 (249)
|--|.|..|+-|.. ..+|.|=-
T Consensus 17 r~p~~~a~l~~~~llll~ail~w~~ 41 (381)
T PF05297_consen 17 RCPQPHASLLFGLLLLLVAILVWFF 41 (381)
T ss_dssp -------------------------
T ss_pred CCCCcchhHHHHHHHHHHHHHHHHH
Confidence 44456777776642 34555643
No 23
>PF06363 Picorna_P3A: Picornaviridae P3A protein; InterPro: IPR009419 The viral polyprotein of parechoviruses contains: coat protein VP0 (P1AB); coat protein VP3 (P1C); coat protein VP1 (P1D); picornain 2A (3.4.22.29 from EC, core protein P2A); core protein P2B; core protein P2C; core protein P3A; genome-linked protein VPg (P3B); picornain 3C (3.4.22.28 from EC, MEROPS peptidase subfamily 3CF: parechovirus picornain 3C (P3C))[]. This entry consists of the parechovirus P3A protein. P3A has been identified as a genome-linked protein (VPg), which is involved in replication [].; GO: 0019012 virion
Probab=32.19 E-value=2.3e+02 Score=22.09 Aligned_cols=50 Identities=18% Similarity=0.135 Sum_probs=33.5
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHhhhhcccChHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 025719 137 LPEEPFLQVASAFRIELNHAFAVLRSIASGRDLKSFLMAIAALWVLSVVGSWCNFLTLFYIA 198 (249)
Q Consensus 137 isee~v~~~a~~v~~~iN~~l~~lr~i~~g~d~~~~lkv~v~L~vls~vGs~~s~lTLlyi~ 198 (249)
.+....+++.+.+..++++.....-| | -+.+-++|.+.|.+|.+||.|.-
T Consensus 42 ~~~~a~~kv~~W~~~k~k~~~~FV~R-----N-------k~W~T~~S~~tS~isIL~LV~~~ 91 (100)
T PF06363_consen 42 KIKTACDKVKSWVKNKMKSMLSFVER-----N-------KAWFTVVSAVTSFISILLLVTKI 91 (100)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH-----c-------chHhhHHHHHHHHHHHHHHHHHH
Confidence 34567777777887777777655432 2 13455678888888888887754
No 24
>COG3887 Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain [Signal transduction mechanisms]
Probab=32.03 E-value=4.4e+02 Score=27.23 Aligned_cols=56 Identities=13% Similarity=0.262 Sum_probs=29.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Q 025719 186 GSWCNFLTLFYIALVLLHIVPVLYEKYEDKIDPLAEKAMIEIKKQYAVFDAKVLSKIPVK 245 (249)
Q Consensus 186 Gs~~s~lTLlyi~~v~~fTvP~lYekyqd~ID~~~~k~~~~i~~~y~~~~~kv~skiP~~ 245 (249)
|+|.+..-++.+++...|.+-..+.-||+..-.+++. ++.+.+..-+..+-..|-|
T Consensus 32 ~~~l~~i~~l~~~~~~i~~l~~~~~~~~~~~~~~i~~----ls~~~~~~~~~al~nmPiG 87 (655)
T COG3887 32 NWWLSAIAVLLLVVFLIFLLLAFTLFYQDSDQNYISY----LSYQAEKSLEEALTNMPIG 87 (655)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhCCce
Confidence 3333333333333333333333333444433335555 5666677777888889976
No 25
>PF01594 UPF0118: Domain of unknown function DUF20; InterPro: IPR002549 This is a family of hypothetical proteins. A number of the sequence records state they are transmembrane proteins or putative permeases. It is not clear what source suggested that these proteins might be permeases and this information should be treated with caution.
Probab=31.88 E-value=3.8e+02 Score=24.02 Aligned_cols=18 Identities=28% Similarity=0.227 Sum_probs=8.1
Q ss_pred HHHHHHHHhhhhhHHHHH
Q 025719 178 ALWVLSVVGSWCNFLTLF 195 (249)
Q Consensus 178 ~L~vls~vGs~~s~lTLl 195 (249)
.-++.+.+++..++..=+
T Consensus 130 ~~~~~~~~~~~~~~l~~~ 147 (327)
T PF01594_consen 130 LSSLSSFISSIFSFLFNF 147 (327)
T ss_pred HHHHHHHHHhhhhHHHHH
Confidence 334445555544444333
No 26
>KOG1889 consensus Putative phosphoinositide phosphatase [Lipid transport and metabolism]
Probab=31.73 E-value=1.2e+02 Score=30.76 Aligned_cols=80 Identities=14% Similarity=0.128 Sum_probs=49.8
Q ss_pred CCCccccccCCCcccceec----------ccccchhHHHHHHHHHHHHHHHH-hccchhHHHHHHHHHHHHHHHHHHHHH
Q 025719 54 RERPVHQVFGGGKPADVFL----------WRNKKISAGVLGGATAIWVLFEL-FEYHLLTLVCHTLILALAILFLWANAH 122 (249)
Q Consensus 54 r~~p~h~~Lgggk~aDlLl----------Wrn~k~S~~vf~~~t~~w~Lf~~-~~ysllslv~~~~ll~l~~lFl~s~~~ 122 (249)
||.+..-+||+=.+.+... |+---..++.+.+.++ ..+-.+ ..-+++-.+.+..++++...+++-+..
T Consensus 486 rQDsiDL~lG~f~v~~s~s~~~pl~~~~~~~~~~~p~i~lva~~m-~~is~l~~~~~l~~~l~w~~~~~~s~~~i~~~g~ 564 (579)
T KOG1889|consen 486 RQDSIDLFLGNFRVDVSRSDLSPLPLRRGLYILAAPIIFLVALSM-FIISLLFSTPNLLYRLFWFAIMVVSIAVILINGD 564 (579)
T ss_pred ccchHHHhcCCcccccccccCCCcccccCceeehhhHHHHHHHHH-HHHHHHhCCchHHHHHHHHHHHHHHHHhheechH
Confidence 8888888888887777764 4443333333333322 222222 235566666666666666677788888
Q ss_pred hhhccCCCCCCc
Q 025719 123 TFIKKAPPCIPE 134 (249)
Q Consensus 123 ~~i~k~~~~~P~ 134 (249)
+++||+-...|.
T Consensus 565 ~fvnwPrl~~p~ 576 (579)
T KOG1889|consen 565 QFVNWPRLVLPQ 576 (579)
T ss_pred HhcCCccccCcc
Confidence 999998776664
No 27
>PRK06433 NADH dehydrogenase subunit J; Provisional
Probab=28.22 E-value=1.4e+02 Score=22.58 Aligned_cols=35 Identities=34% Similarity=0.266 Sum_probs=22.2
Q ss_pred eecccccchhHHHHHHHHHHH-HHHHHhccchhHHH
Q 025719 70 VFLWRNKKISAGVLGGATAIW-VLFELFEYHLLTLV 104 (249)
Q Consensus 70 lLlWrn~k~S~~vf~~~t~~w-~Lf~~~~ysllslv 104 (249)
++.+||+-+|+..++.....- .+|.+.+..++.+.
T Consensus 22 vv~~kn~v~svl~l~~~~~~~a~l~~lL~a~fvA~~ 57 (88)
T PRK06433 22 VVLSRDVWHSALYLGVALFSVAVLYVMLNAEFLAAV 57 (88)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 578899999988876554322 34445566655543
No 28
>PF04298 Zn_peptidase_2: Putative neutral zinc metallopeptidase; InterPro: IPR007395 Members of this family of bacterial proteins are described as hypothetical proteins or zinc-dependent proteases. The majority have a HExxH zinc-binding motif characteristic of neutral zinc metallopeptidases, however there is no evidence to support their function as metallopeptidases.
Probab=27.09 E-value=4.6e+02 Score=23.47 Aligned_cols=106 Identities=18% Similarity=0.181 Sum_probs=57.0
Q ss_pred ceecccccchhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCceecChHHHHHHHHH
Q 025719 69 DVFLWRNKKISAGVLGGATAIWVLFELFEYHLLTLVCHTLILALAILFLWANAHTFIKKAPPCIPEVHLPEEPFLQVASA 148 (249)
Q Consensus 69 DlLlWrn~k~S~~vf~~~t~~w~Lf~~~~ysllslv~~~~ll~l~~lFl~s~~~~~i~k~~~~~P~~~isee~v~~~a~~ 148 (249)
-.+-||+.-....-++.-...|+++--.-......+..++++.+++. .+.+++ ++|.|. .
T Consensus 108 ~pl~lRs~lvP~~~~~s~~~~~l~~~G~~l~~~~~l~~~Gi~lf~~~----vlf~lv----------TLPVEf-d----- 167 (222)
T PF04298_consen 108 APLRLRSALVPVANIGSNLSWILLILGLFLSSGAGLLWIGIILFSLA----VLFQLV----------TLPVEF-D----- 167 (222)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhee----------echhhh-h-----
Confidence 35678998888888888776555442111111222333333322222 222221 233221 0
Q ss_pred HHHHHHHHHHHHhh--hhcccC---hHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 025719 149 FRIELNHAFAVLRS--IASGRD---LKSFLMAIAALWVLSVVGSWCNFLTLFYI 197 (249)
Q Consensus 149 v~~~iN~~l~~lr~--i~~g~d---~~~~lkv~v~L~vls~vGs~~s~lTLlyi 197 (249)
.=|+++..+++ +...++ -++-|..++..|+.+-+.+..+++-++.+
T Consensus 168 ---AS~RAl~~L~~~~~l~~~E~~~arkVL~AAAlTYVAaal~sll~llr~l~i 218 (222)
T PF04298_consen 168 ---ASRRALPILEEGGILSPEELPGARKVLTAAALTYVAAALSSLLQLLRLLLI 218 (222)
T ss_pred ---hhHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01555655553 333333 46677888999999999988887776654
No 29
>KOG3747 consensus Concentrative Na+-nucleoside cotransporter CNT1/CNT2 [Nucleotide transport and metabolism; Inorganic ion transport and metabolism]
Probab=26.74 E-value=5.9e+02 Score=25.90 Aligned_cols=42 Identities=14% Similarity=0.355 Sum_probs=28.5
Q ss_pred cccccchhHHHHHHHHHHHHHHHHhc--cchhHHHHHHHHHHHH
Q 025719 72 LWRNKKISAGVLGGATAIWVLFELFE--YHLLTLVCHTLILALA 113 (249)
Q Consensus 72 lWrn~k~S~~vf~~~t~~w~Lf~~~~--ysllslv~~~~ll~l~ 113 (249)
+|--+-.....|.++++.|+.|+..+ +-++++..++..+.++
T Consensus 149 ~w~v~~~~~~~~l~~l~~~l~~dt~~~~~qLv~f~g~v~fIl~~ 192 (602)
T KOG3747|consen 149 LWFVSLVAKAAFLAALVAWLIFDTRQDPQQLVGFGGPVFFILFL 192 (602)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccHHHhhccccHHHHHHHH
Confidence 45556666777788888999999765 4466666666554443
No 30
>PF05814 DUF843: Baculovirus protein of unknown function (DUF843); InterPro: IPR008561 This family consists of several unidentified baculovirus proteins of around 85 residues long with no known function.
Probab=26.07 E-value=3e+02 Score=20.94 Aligned_cols=51 Identities=25% Similarity=0.342 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhchhhHHHHH-HHHHH-HHHHHHHHHHHHHHhh
Q 025719 191 FLTLFYIALVLLHIVPVLYEKYEDKIDPLA-EKAMI-EIKKQYAVFDAKVLSK 241 (249)
Q Consensus 191 ~lTLlyi~~v~~fTvP~lYekyqd~ID~~~-~k~~~-~i~~~y~~~~~kv~sk 241 (249)
.++++.+.++....+++.|-+-|...+..- ++++. +=|++.++.-+.+++|
T Consensus 27 i~~~LilfviF~~~L~~yy~kteS~~~dL~t~k~K~~KKK~~ln~afDAiLNK 79 (83)
T PF05814_consen 27 IITLLILFVIFFCVLQVYYIKTESTPQDLQTEKAKSIKKKRDLNDAFDAILNK 79 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCcHHHHhhhhhhhHHHHHHHHHHHHHHHhc
Confidence 455565666666677888987777765443 33322 1233555555566654
No 31
>KOG2628 consensus Farnesyl cysteine-carboxyl methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=25.98 E-value=2.5e+02 Score=24.76 Aligned_cols=62 Identities=23% Similarity=0.321 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHhhhhhHHHHH-HHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Q 025719 175 AIAALWVLSVVGSWCNFLTLF-YIALVLLHIVPVLYEKYEDKIDPLAEKAMIEIKKQYAVFDAKVLSKIPV 244 (249)
Q Consensus 175 v~v~L~vls~vGs~~s~lTLl-yi~~v~~fTvP~lYekyqd~ID~~~~k~~~~i~~~y~~~~~kv~skiP~ 244 (249)
+...+|.++.---.||..+++ |+.++--|.-|++++.=++.|.-+ .++|.+-.+||-++||.
T Consensus 137 ~g~flw~~gtq~~L~npis~v~f~~V~w~ff~~Ri~~EE~~Li~fF--------g~~Y~eY~kkV~sGiPf 199 (201)
T KOG2628|consen 137 VGFFLWAAGTQTMLCNPISLVAFLLVVWRFFADRIKEEEKYLISFF--------GSSYVEYAKKVPSGIPF 199 (201)
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHhhhhhHHHHHHHHHh--------hHHHHHHHHhCCcCCCC
Confidence 455667666655556666554 556666788888887766555444 35677788899999995
No 32
>PRK09579 multidrug efflux protein; Reviewed
Probab=25.62 E-value=8.8e+02 Score=26.27 Aligned_cols=42 Identities=14% Similarity=0.228 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHhchh------hHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025719 199 LVLLHIVPVLYEKYED------KIDPLAEKAMIEIKKQYAVFDAKVLS 240 (249)
Q Consensus 199 ~v~~fTvP~lYekyqd------~ID~~~~k~~~~i~~~y~~~~~kv~s 240 (249)
++.++.+|.+|...-. ......++....+++.|.++-.+++.
T Consensus 475 l~al~l~P~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Y~~~l~~~l~ 522 (1017)
T PRK09579 475 IVALTLSPMMCALLLRHEENPSGLAHRLDRLFERLKQRYQRALHGTLN 522 (1017)
T ss_pred HHHHHHHHHHHHHhcccccccchhhHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4556677888764311 11111122233456677766666553
No 33
>PF06881 Elongin_A: RNA polymerase II transcription factor SIII (Elongin) subunit A; InterPro: IPR010684 This family represents a conserved region within RNA polymerase II transcription factor SIII (Elongin) subunit A. In mammals, the Elongin complex activates elongation by RNA polymerase II by suppressing transient pausing of the polymerase at many sites within transcription units. Elongin is a heterotrimer composed of A, B, and C subunits of 110, 18, and 15 kilodaltons, respectively. Subunit A has been shown to function as the transcriptionally active component of Elongin [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus, 0016021 integral to membrane
Probab=25.36 E-value=1.1e+02 Score=23.68 Aligned_cols=33 Identities=18% Similarity=0.232 Sum_probs=28.7
Q ss_pred HHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHH
Q 025719 204 IVPVLYEKYEDKIDPLAEKAMIEIKKQYAVFDA 236 (249)
Q Consensus 204 TvP~lYekyqd~ID~~~~k~~~~i~~~y~~~~~ 236 (249)
++=-+|.+|+++-|.....+...+++.|+....
T Consensus 64 ~Wr~~Y~~~~~e~e~~~~~~~~~L~~~~~~~~~ 96 (109)
T PF06881_consen 64 SWRELYEKLKKEREEKLKEATERLRKKIKKLQQ 96 (109)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 666789999999999999999999999987664
No 34
>PF13198 DUF4014: Protein of unknown function (DUF4014)
Probab=25.00 E-value=2.4e+02 Score=20.86 Aligned_cols=24 Identities=21% Similarity=0.256 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHhchhhHHHHHH
Q 025719 198 ALVLLHIVPVLYEKYEDKIDPLAE 221 (249)
Q Consensus 198 ~~v~~fTvP~lYekyqd~ID~~~~ 221 (249)
...+..++-.+.|+|.+.+-....
T Consensus 37 ~~~i~~~~E~l~e~Y~~~~w~~F~ 60 (72)
T PF13198_consen 37 VWIIGKIIEPLFELYKDWFWNPFN 60 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHH
Confidence 334444555555555555444433
No 35
>COG2928 Uncharacterized conserved protein [Function unknown]
Probab=24.60 E-value=5.1e+02 Score=23.20 Aligned_cols=18 Identities=22% Similarity=0.504 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHhhCCC
Q 025719 227 IKKQYAVFDAKVLSKIPV 244 (249)
Q Consensus 227 i~~~y~~~~~kv~skiP~ 244 (249)
+.+..-.+-++++.+||-
T Consensus 79 ig~~l~~~~d~~L~RiPl 96 (222)
T COG2928 79 IGRSLLSLGDSLLRRIPL 96 (222)
T ss_pred hhhHHHHHHHHHHccCcc
Confidence 344444455566666663
No 36
>PF04842 DUF639: Plant protein of unknown function (DUF639); InterPro: IPR006927 The sequences in this family are plant proteins of unknown function.
Probab=24.19 E-value=8e+02 Score=25.67 Aligned_cols=57 Identities=25% Similarity=0.373 Sum_probs=33.6
Q ss_pred HHHHHHHHhhhhcccChHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhch
Q 025719 153 LNHAFAVLRSIASGRDLKSFLMAIAALWVLSVVGSWCNFLTLFYIALVLLHIVPVLYEKYE 213 (249)
Q Consensus 153 iN~~l~~lr~i~~g~d~~~~lkv~v~L~vls~vGs~~s~lTLlyi~~v~~fTvP~lYekyq 213 (249)
+.....+++.+..++|+.+++.+.++.+.+-+-| | +.-++-.+++...+-+++.+|+
T Consensus 499 l~~i~~~~~~l~~We~P~kt~~Fl~~~~~iI~r~-w---l~Y~~p~~Ll~~a~~Ml~~r~~ 555 (683)
T PF04842_consen 499 LIEIAKWLQKLASWEEPLKTLVFLALFLYIIYRG-W---LGYIFPAFLLFSAVFMLWLRYQ 555 (683)
T ss_pred HHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHH-H---HHHHHHHHHHHHHHHHHHHHhh
Confidence 4556788999999999999987765444433322 1 1112223334444445567776
No 37
>PF13677 MotB_plug: Membrane MotB of proton-channel complex MotA/MotB
Probab=23.72 E-value=1.6e+02 Score=20.37 Aligned_cols=23 Identities=22% Similarity=0.431 Sum_probs=17.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHH
Q 025719 188 WCNFLTLFYIALVLLHIVPVLYE 210 (249)
Q Consensus 188 ~~s~lTLlyi~~v~~fTvP~lYe 210 (249)
+-++.||+..-|++++.+-.+=+
T Consensus 21 yaDlmTLLl~fFVlL~s~s~~d~ 43 (58)
T PF13677_consen 21 YADLMTLLLAFFVLLFSMSSVDK 43 (58)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCH
Confidence 34889999999998888765433
No 38
>PHA02677 hypothetical protein; Provisional
Probab=23.57 E-value=1.5e+02 Score=23.52 Aligned_cols=33 Identities=27% Similarity=0.537 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHH
Q 025719 191 FLTLFYIALVLLHIVPVLYEKYEDKIDPLAEKA 223 (249)
Q Consensus 191 ~lTLlyi~~v~~fTvP~lYekyqd~ID~~~~k~ 223 (249)
|+-|+|...+.=..+|.+.||-+.+=|++..-.
T Consensus 5 FLilCYFILIFNIiVP~I~EKlR~E~~Af~ky~ 37 (108)
T PHA02677 5 FLIICYFVLIFNILVPGIFEKLRQEHAAFDRLA 37 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888888888899999999999999887643
No 39
>PF13994 PgaD: PgaD-like protein
Probab=22.69 E-value=4.1e+02 Score=21.41 Aligned_cols=10 Identities=50% Similarity=0.973 Sum_probs=6.1
Q ss_pred HHHHHHHHHh
Q 025719 114 ILFLWANAHT 123 (249)
Q Consensus 114 ~lFl~s~~~~ 123 (249)
++++|+..-.
T Consensus 77 ~Li~Wa~yn~ 86 (138)
T PF13994_consen 77 ILILWAKYNR 86 (138)
T ss_pred HHHHHHHHHH
Confidence 4557886653
No 40
>KOG3873 consensus Sphingomyelinase family protein [Signal transduction mechanisms]
Probab=22.18 E-value=4.5e+02 Score=25.62 Aligned_cols=50 Identities=24% Similarity=0.214 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHH-HHHHHHHHHH--HHHhchhhHHHHHHHHH
Q 025719 175 AIAALWVLSVVGSWCNFLTLFYI-ALVLLHIVPV--LYEKYEDKIDPLAEKAM 224 (249)
Q Consensus 175 v~v~L~vls~vGs~~s~lTLlyi-~~v~~fTvP~--lYekyqd~ID~~~~k~~ 224 (249)
+++++.++....-|++..-+++. +...+||+-. .+---|.+|-.++|.+.
T Consensus 348 ~av~~~~~~~~~lw~~v~~l~f~i~~~~a~~V~G~i~f~~~~~ei~~~lEr~~ 400 (422)
T KOG3873|consen 348 AAVFLAVLAVLLLWFTVFVLMFTIFLLIAFTVFGVIGFLVGQAEIWNLLERNG 400 (422)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHhheecceeeeeeHHHHHHHHHHHH
Confidence 33333333333334433333333 3336666654 34456777888887754
No 41
>PF05062 RICH: RICH domain; InterPro: IPR007756 This domain is about 85 residues in length and very rich in charged residues, hence the name RICH (Rich In CHarged residues). It is found in secreted proteins such as PspC Q9KK19 from SWISSPROT, SpsA O33742 from SWISSPROT and IgA FC receptor P27951 from SWISSPROT from Streptococcus agalactiae. This domain could be involved in bacterial adherence or cell wall binding.
Probab=21.41 E-value=1.7e+02 Score=22.22 Aligned_cols=25 Identities=40% Similarity=0.478 Sum_probs=20.7
Q ss_pred HHhchhhHHHHHHHHHHHHHHHHHH
Q 025719 209 YEKYEDKIDPLAEKAMIEIKKQYAV 233 (249)
Q Consensus 209 Yekyqd~ID~~~~k~~~~i~~~y~~ 233 (249)
.+++.++|+.|+++....++++..+
T Consensus 4 ~~Ka~~~V~~y~~kiL~ei~~~L~k 28 (82)
T PF05062_consen 4 RKKAKDEVDEYMEKILSEIKKQLDK 28 (82)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788999999999999888766554
No 42
>PRK03072 heat shock protein HtpX; Provisional
Probab=20.51 E-value=5.4e+02 Score=23.41 Aligned_cols=21 Identities=33% Similarity=0.417 Sum_probs=15.1
Q ss_pred ccccchhHHHHHHHHHHHHHH
Q 025719 73 WRNKKISAGVLGGATAIWVLF 93 (249)
Q Consensus 73 Wrn~k~S~~vf~~~t~~w~Lf 93 (249)
|+|..+|.+++++.+++..++
T Consensus 4 ~~~~~~t~~l~~~~~~~~~~~ 24 (288)
T PRK03072 4 HANGLKTALLLGGMSALIVFI 24 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 567788888888877755444
No 43
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=20.25 E-value=6.2e+02 Score=27.31 Aligned_cols=112 Identities=24% Similarity=0.364 Sum_probs=65.2
Q ss_pred hHHHHHHHHHHHH-----HHHHHHHHHhhhccCCCCCCceecChHHHHHHHHHHHHH-HHHHHHHHhhhhcccChHHHHH
Q 025719 101 LTLVCHTLILALA-----ILFLWANAHTFIKKAPPCIPEVHLPEEPFLQVASAFRIE-LNHAFAVLRSIASGRDLKSFLM 174 (249)
Q Consensus 101 lslv~~~~ll~l~-----~lFl~s~~~~~i~k~~~~~P~~~isee~v~~~a~~v~~~-iN~~l~~lr~i~~g~d~~~~lk 174 (249)
+..+|.++.-.|- .-|+.+.+.....+.||.. |+ +.+....++.. -..+-..++.|.+--|...-..
T Consensus 794 Vn~ICdair~~l~~~~~~~~~l~~IlTa~vkk~Pp~l------e~-aL~~I~~l~~~~~~~ae~alkyl~fLvDvn~Ly~ 866 (928)
T PF04762_consen 794 VNKICDAIRKALEKPKDKDKYLQPILTAYVKKSPPDL------EE-ALQLIKELREEDPESAEEALKYLCFLVDVNKLYD 866 (928)
T ss_pred HHHHHHHHHHHhcccccchhhHHHHHHHHHhcCchhH------HH-HHHHHHHHHhcChHHHHHHHhHheeeccHHHHHH
Confidence 4455555555552 3455566666677777664 23 33333333322 2234466777777778888888
Q ss_pred HHHHHHHHHHHhh-----------hhhHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHH
Q 025719 175 AIAALWVLSVVGS-----------WCNFLTLFYIALVLLHIVPVLYEKYEDKIDPLAEKAMIEIK 228 (249)
Q Consensus 175 v~v~L~vls~vGs-----------~~s~lTLlyi~~v~~fTvP~lYekyqd~ID~~~~k~~~~i~ 228 (249)
++.++|=+...-- +..|+. -+.-+|..|.||+ ||.++++....++
T Consensus 867 ~ALG~YDl~Lal~VAq~SQkDPKEYLPfL~-------~L~~l~~~~rry~--ID~hLkRy~kAL~ 922 (928)
T PF04762_consen 867 VALGTYDLELALMVAQQSQKDPKEYLPFLQ-------ELQKLPPLYRRYK--IDDHLKRYEKALR 922 (928)
T ss_pred HHhhhcCHHHHHHHHHHhccChHHHHHHHH-------HHHhCChhheeee--HhhhhCCHHHHHH
Confidence 8888885544311 122221 3456888898887 9999876544333
No 44
>PRK14416 membrane protein; Provisional
Probab=20.19 E-value=4.4e+02 Score=23.12 Aligned_cols=42 Identities=21% Similarity=0.207 Sum_probs=25.2
Q ss_pred ccCCCCCCccccccCCCcc----cceecccccchhH-HHHHHHHHHH
Q 025719 49 YRLFGRERPVHQVFGGGKP----ADVFLWRNKKISA-GVLGGATAIW 90 (249)
Q Consensus 49 ~r~f~r~~p~h~~Lgggk~----aDlLlWrn~k~S~-~vf~~~t~~w 90 (249)
.-.+|.--|+.--+.|||- .-++++=+|.... .++....++|
T Consensus 77 aavlGH~~pi~l~FkGGKGvAt~~G~l~~l~p~~~l~~~~~~~~~i~ 123 (200)
T PRK14416 77 AAVIGHNWSVWLDFKGGKGLGPAFGAMLFLLPVYGLPQQLGILALLV 123 (200)
T ss_pred HHHHcccChhhhcCCCccHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3445777777777778872 3667777776554 3333333333
Done!