Query 025719
Match_columns 249
No_of_seqs 175 out of 510
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 16:06:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025719.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025719hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ko2_A Reticulon-4; NOGO, memb 98.0 6.7E-07 2.3E-11 66.0 0.3 58 117-174 15-79 (79)
2 2g31_A Reticulon-4; NOGO, heli 97.2 4.9E-06 1.7E-10 58.3 -5.0 49 120-168 5-60 (60)
3 2knc_A Integrin alpha-IIB; tra 33.2 75 0.0026 21.2 4.6 29 101-131 17-45 (54)
4 2l8s_A Integrin alpha-1; trans 32.7 78 0.0027 21.1 4.6 29 101-131 14-42 (54)
5 2k1a_A Integrin alpha-IIB; sin 22.5 1.1E+02 0.0039 19.2 3.8 27 101-129 15-41 (42)
6 3ci9_A Heat shock factor-bindi 16.2 1.8E+02 0.0062 18.8 3.8 29 214-242 5-33 (48)
7 1w53_A Phosphoserine phosphata 16.0 1.6E+02 0.0055 21.2 3.9 37 204-240 3-39 (84)
8 3arc_L Photosystem II reaction 15.8 1.4E+02 0.0048 18.2 2.9 20 193-212 15-34 (37)
9 2wuj_A Septum site-determining 12.9 2.3E+02 0.008 18.5 3.8 21 213-233 22-42 (57)
10 4g8t_A Glucarate dehydratase; 11.9 80 0.0027 29.4 1.6 29 43-71 133-163 (464)
No 1
>2ko2_A Reticulon-4; NOGO, membrane protein, peripheral, DPC micelle, myelin INHI endoplasmic reticulum, membrane, phosphoprotein, transmembr; NMR {Mus musculus}
Probab=98.04 E-value=6.7e-07 Score=65.99 Aligned_cols=58 Identities=22% Similarity=0.217 Sum_probs=54.2
Q ss_pred HHHHHHhhhccCCCCCC-------ceecChHHHHHHHHHHHHHHHHHHHHHhhhhcccChHHHHH
Q 025719 117 LWANAHTFIKKAPPCIP-------EVHLPEEPFLQVASAFRIELNHAFAVLRSIASGRDLKSFLM 174 (249)
Q Consensus 117 l~s~~~~~i~k~~~~~P-------~~~isee~v~~~a~~v~~~iN~~l~~lr~i~~g~d~~~~lk 174 (249)
+|..+.+.++|+...+| ++.+|+|.++++++.+...+|.++..+|++++++|+..|+|
T Consensus 15 iYk~vlqavqKtd~~hPFk~YLd~Di~ls~E~~~~~~~~~v~~in~~l~~LRrLfLVedlvDSLK 79 (79)
T 2ko2_A 15 IYKGVIQAIQKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNSTIKELRRLFLVDDLVDSLK 79 (79)
T ss_dssp HHHHTHHHHHCTTTTCCSHHHHHHHHHHTTCHHHHHHHCTTTHHHHHHHHHHHHHHHTCTTGGGC
T ss_pred HHHHHHHHHHhCCCCCCccccccccccCCHHHHHHHHHHHHHHHHHHHHHHhHHhhcccHHHhcC
Confidence 78888899999998888 88999999999999999999999999999999999988764
No 2
>2g31_A Reticulon-4; NOGO, helix, signaling protein; NMR {Homo sapiens} PDB: 2jv5_A
Probab=97.23 E-value=4.9e-06 Score=58.34 Aligned_cols=49 Identities=22% Similarity=0.188 Sum_probs=42.4
Q ss_pred HHHhhhccCCCCCC-------ceecChHHHHHHHHHHHHHHHHHHHHHhhhhcccC
Q 025719 120 NAHTFIKKAPPCIP-------EVHLPEEPFLQVASAFRIELNHAFAVLRSIASGRD 168 (249)
Q Consensus 120 ~~~~~i~k~~~~~P-------~~~isee~v~~~a~~v~~~iN~~l~~lr~i~~g~d 168 (249)
.+.+.++|+...+| ++.+|+|.++++++.+...+|.++..+|++++.+|
T Consensus 5 ~vlqavqKt~~~hPFk~yLd~di~ls~e~~~~~~~~~v~~in~~l~~lrrLfLVed 60 (60)
T 2g31_A 5 GVIQAIQKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNCTIKELRRLFLVDD 60 (60)
T ss_dssp TTTTHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHGGGTCHHHHHHHHTSSCTTC
T ss_pred HHHHHHHhCCCCCCchhccccCcCCCHHHHHHHHHHHHHHHHHHHHHHhHhhccCC
Confidence 34455677766666 88999999999999999999999999999999987
No 3
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=33.18 E-value=75 Score=21.19 Aligned_cols=29 Identities=24% Similarity=0.553 Sum_probs=19.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhccCCCC
Q 025719 101 LTLVCHTLILALAILFLWANAHTFIKKAPPC 131 (249)
Q Consensus 101 lslv~~~~ll~l~~lFl~s~~~~~i~k~~~~ 131 (249)
+++++-++++++++..+|. ++|++|..++
T Consensus 17 ~svl~GLllL~li~~~LwK--~GFFkR~~~~ 45 (54)
T 2knc_A 17 VGVLGGLLLLTILVLAMWK--VGFFKRNRPP 45 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHH--HHHTTTTCCS
T ss_pred HHHHHHHHHHHHHHHHHHH--cCcccCCCCC
Confidence 4666666667777777785 4788877554
No 4
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=32.65 E-value=78 Score=21.14 Aligned_cols=29 Identities=34% Similarity=0.504 Sum_probs=19.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhccCCCC
Q 025719 101 LTLVCHTLILALAILFLWANAHTFIKKAPPC 131 (249)
Q Consensus 101 lslv~~~~ll~l~~lFl~s~~~~~i~k~~~~ 131 (249)
+++++-++++++++..+|. ++|++|..++
T Consensus 14 ~svl~GLLLL~Lii~~LwK--~GFFKR~~~~ 42 (54)
T 2l8s_A 14 LSAFAGLLLLMLLILALWK--IGFFKRPLKK 42 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHH--HHHTTSCCSC
T ss_pred HHHHHHHHHHHHHHHHHHH--cCcccCCCcc
Confidence 4666666666777777885 4788877553
No 5
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=22.53 E-value=1.1e+02 Score=19.18 Aligned_cols=27 Identities=22% Similarity=0.539 Sum_probs=16.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhccCC
Q 025719 101 LTLVCHTLILALAILFLWANAHTFIKKAP 129 (249)
Q Consensus 101 lslv~~~~ll~l~~lFl~s~~~~~i~k~~ 129 (249)
+++++-++++++.+..+|. ++|++|..
T Consensus 15 ~s~l~GLllL~li~~~LwK--~GFFkR~~ 41 (42)
T 2k1a_A 15 VGVLGGLLLLTILVLAMWK--VGFFKRNR 41 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHH--TTTTCCCC
T ss_pred HHHHHHHHHHHHHHHHHHH--cCcccCCC
Confidence 4556666666666666775 46776653
No 6
>3ci9_A Heat shock factor-binding protein 1; triple helix, nucleus, transcription; 1.80A {Homo sapiens}
Probab=16.16 E-value=1.8e+02 Score=18.79 Aligned_cols=29 Identities=3% Similarity=0.418 Sum_probs=21.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 025719 214 DKIDPLAEKAMIEIKKQYAVFDAKVLSKI 242 (249)
Q Consensus 214 d~ID~~~~k~~~~i~~~y~~~~~kv~ski 242 (249)
.++-.+++....+++..++.....+++||
T Consensus 5 ~dLt~~vq~LL~qmq~kFq~mS~~I~~ri 33 (48)
T 3ci9_A 5 QDLTSVVQTLLQQMQDKFQTISDQIIGRI 33 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777777888887777777765
No 7
>1w53_A Phosphoserine phosphatase RSBU; stress, kinase, hydrolase; 1.6A {Bacillus subtilis} SCOP: a.186.1.2
Probab=16.03 E-value=1.6e+02 Score=21.22 Aligned_cols=37 Identities=14% Similarity=0.158 Sum_probs=28.5
Q ss_pred HHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025719 204 IVPVLYEKYEDKIDPLAEKAMIEIKKQYAVFDAKVLS 240 (249)
Q Consensus 204 TvP~lYekyqd~ID~~~~k~~~~i~~~y~~~~~kv~s 240 (249)
+.+.+.++|++.++.++..-..+.-.+-++|..+++.
T Consensus 3 ~m~~~~~~Y~~iL~~yl~~~~E~~Ly~~q~fs~~~ie 39 (84)
T 1w53_A 3 FREVIEQRYHQLLSRYIAELTETSLYQAQKFSRKTIE 39 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhHHHHH
Confidence 4567889999999999987777666677777766653
No 8
>3arc_L Photosystem II reaction center protein L; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_L* 3a0b_L* 3a0h_L* 2axt_L* 3bz1_L* 3bz2_L* 3kzi_L* 3prq_L* 3prr_L*
Probab=15.83 E-value=1.4e+02 Score=18.25 Aligned_cols=20 Identities=30% Similarity=0.806 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q 025719 193 TLFYIALVLLHIVPVLYEKY 212 (249)
Q Consensus 193 TLlyi~~v~~fTvP~lYeky 212 (249)
|=+|.|.++.|.+-+++..|
T Consensus 15 TSLy~GLLlifvlavlFssy 34 (37)
T 3arc_L 15 TSLYLGLLLILVLALLFSSY 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhhhh
Confidence 55677777777777777665
No 9
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=12.86 E-value=2.3e+02 Score=18.51 Aligned_cols=21 Identities=10% Similarity=0.164 Sum_probs=15.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHH
Q 025719 213 EDKIDPLAEKAMIEIKKQYAV 233 (249)
Q Consensus 213 qd~ID~~~~k~~~~i~~~y~~ 233 (249)
+++||.++..+...+...++.
T Consensus 22 ~~EVD~FLd~v~~~~~~l~~e 42 (57)
T 2wuj_A 22 EDEVNEFLAQVRKDYEIVLRK 42 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 578999998887666555544
No 10
>4g8t_A Glucarate dehydratase; enolase, enzyme function INI EFI, structural genomics, lyase; 1.70A {Actinobacillus succinogenes} PDB: 1ec7_A 1ec8_A* 1ec9_A* 1ecq_A* 1jdf_A* 3pwi_A* 1jct_A* 3pwg_A* 1bqg_A
Probab=11.94 E-value=80 Score=29.38 Aligned_cols=29 Identities=24% Similarity=0.536 Sum_probs=19.5
Q ss_pred ccccccccCCCC--CCccccccCCCccccee
Q 025719 43 SVKADIYRLFGR--ERPVHQVFGGGKPADVF 71 (249)
Q Consensus 43 ~~~~~~~r~f~r--~~p~h~~Lgggk~aDlL 71 (249)
++..-..-+.|+ .+|++++||||+..|-+
T Consensus 133 AID~ALWDl~gK~~g~Pv~~LLGgG~~Rd~V 163 (464)
T 4g8t_A 133 AIEAAMLDLLGQFLGVTVASLLGDGQQRDAV 163 (464)
T ss_dssp HHHHHHHHHHHHHHTSBTGGGSTTSCCCSEE
T ss_pred HHHHHHHHHHHHHcCCcHHHHhCCCCCCceE
Confidence 344444555554 47999999999876643
Done!